Citrus Sinensis ID: 030147

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180--
Protein Sequence
MGSIAKKGLQQYLIQLQQHPLRTKAITAGVLSAISDIVAQKLTGIQKLQLRRLLLKVLFGCAYLGPFGHFLHLILDKIFKGKKDTSTVAKKVVLEQLTSSPWNNLMFMIYYGVVVEGRPWRDVKTKIKKDYPTVQYTSWTFWPVVGWINHLYVPLQFRVIFHSLVAMCWGIFLNLRALPKAK
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHccccccHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHcHHHHHHcccccHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHcHHHHHHcccEccHHHEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
MGSIAKKGLQQYLIQLQqhplrtkaITAGVLSAISDIVAQKLTGIQKLQLRRLLLKVLFGcaylgpfgHFLHLILDKIfkgkkdtsTVAKKVVLEQltsspwnnLMFMIYYGVVvegrpwrdvktkikkdyptvqytswtfwpvVGWINHLYVPLQFRVIFHSLVAMCWGIFLNlralpkak
Flexible Loop (DISEMBL)
mgsiakkgLQQYLIQLQQHPLRTKAITAGVLSAISDIVAQKLTGIQKLQLRRLLLKVLFGCAYLGPFGHFLHLILDKIFKGKKDTSTVAKKVVLeqltsspwnnlMFMIYYGVVVEGRPWRDVKTKIkkdyptvqytsWTFWPVVGWINHLYVPLQFRVIFHSLVAMCWGIFLNLRALPKAK
Low Complexity Region (SEG)
MGSIAKKGLQQYLIQLQQHPLRTKAITAGVLSAISDIVAQKLTGIqklqlrrlllkVLFGCAYLGPFGHFLHLILDKIFKGKKDTSTVAKKVVLEQLTSSPWNNLMFMIYYGVVVEGRPWRDVKTKIKKDYPTVQYTSWTFWPVVGWINHLYVPLQFRVIFHSLVAMCWGIFLNLRALPKAK
Disordered region (IsUnstruct)
********LQQYLIQLQQHPLRTKAITAGVLSAISDIVAQKLTGIQKLQLRRLLLKVLFGCAYLGPFGHFLHLILDKIFKGKKDTSTVAKKVVLEQLTSSPWNNLMFMIYYGVVVEGRPWRDVKTKIKKDYPTVQYTSWTFWPVVGWINHLYVPLQFRVIFHSLVAMCWGIFLNLRA*****
Disordered Region (DISOPRED)
****AKKGLQQYLIQLQQHPLRTKAITAGVLSAISDIVAQKLTGIQKLQLRRLLLKVLFGCAYLGPFGHFLHLILDKIFKGKKDTSTVAKKVVLEQLTSSPWNNLMFMIYYGVVVEGRPWRDVKTKIKKDYPTVQYTSWTFWPVVGWINHLYVPLQFRVIFHSLVAMCWGIFLN*RAL****
Disordered Region (DISEMBL)
MGSIAKKGLQQYLIQLQQHPLRTKAITAGVLSAISDIVAQKLTGIQKLQLRRLLLKVLFGCAYLGPFGHFLHLILDKIFKGKKDTSTVAKKVVLEQLTSSPWNNLMFMIYYGVVVEGRPWRDVKTKIKKDYPTVQYTSWTFWPVVGWINHLYVPLQFRVIFHSLVAMCWGIFLNLRALPKAK
Disordered Region (DISPRO)
*GSIAKKGLQQYLIQLQQHPLRTKAITAGVLSAISDIVAQKLTGIQKLQLRRLLLKVLFGCAYLGPFGHFLHLILDKIFKGKKDTSTVAKKVVLEQLTSSPWNNLMFMIYYGVVVEGRPWRDVKTKIKKDYPTVQYTSWTFWPVVGWINHLYVPLQFRVIFHSLVAMCWGIFLNLRAL****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGSIAKKGLQQYLIQLQQHPLRTKAITAGVLSAISDIVAQKLTGIQKLQLRRLLLKVLFGCAYLGPFGHFLHLILDKIFKGKKDTSTVAKKVVLEQLTSSPWNNLMFMIYYGVVVEGRPWRDVKTKIKKDYPTVQYTSWTFWPVVGWINHLYVPLQFRVIFHSLVAMCWGIFLNLRALPKAK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	182	2.2.26 [Sep-21-2011]
Q9ZS51	190	Peroxisomal membrane prot	no	no	0.972	0.931	0.720	2e-69
Q54GD8	184	PXMP2/4 family protein 3	yes	no	0.895	0.885	0.354	1e-21
Q2KIY1	196	Peroxisomal membrane prot	yes	no	0.934	0.867	0.309	4e-18
Q54FR4	185	PXMP2/4 family protein 4	no	no	0.890	0.875	0.327	8e-18
Q07066	194	Peroxisomal membrane prot	yes	no	0.923	0.865	0.316	8e-17
Q5BK62	176	Protein Mpv17 OS=Rattus n	no	no	0.912	0.943	0.309	4e-16
P19258	176	Protein Mpv17 OS=Mus musc	yes	no	0.912	0.943	0.304	7e-16
P39210	176	Protein Mpv17 OS=Homo sap	yes	no	0.912	0.943	0.304	2e-15
Q2KIN6	176	Protein Mpv17 OS=Bos taur	no	no	0.912	0.943	0.286	1e-14
Q9NR77	195	Peroxisomal membrane prot	no	no	0.939	0.876	0.262	2e-13

>sp|Q9ZS51|PMP22_ARATH Peroxisomal membrane protein PMP22 OS=Arabidopsis thaliana GN=PMP22 PE=1 SV=1

 Score =  261 bits (667), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 129/179 (72%), Positives = 147/179 (82%), Gaps = 2/179 (1%)

Query: 1   MGSIA--KKGLQQYLIQLQQHPLRTKAITAGVLSAISDIVAQKLTGIQKLQLRRLLLKVL 58
           MGS    K  LQ+YL QLQQHPLRTKAITAGVLS +SD+V+QKL+GIQK+QLRR+LLKV+
Sbjct: 1   MGSSPPKKTTLQRYLSQLQQHPLRTKAITAGVLSGVSDVVSQKLSGIQKIQLRRVLLKVI 60

Query: 59  FGCAYLGPFGHFLHLILDKIFKGKKDTSTVAKKVVLEQLTSSPWNNLMFMIYYGVVVEGR 118
           F   +LGP GHF H  LDK FKGKKDT TVAKKV+LEQLT SP N+L+FMIYYGVV+E  
Sbjct: 61  FAGGFLGPAGHFFHTYLDKFFKGKKDTQTVAKKVILEQLTLSPLNHLLFMIYYGVVIERT 120

Query: 119 PWRDVKTKIKKDYPTVQYTSWTFWPVVGWINHLYVPLQFRVIFHSLVAMCWGIFLNLRA 177
           PW  V+ +IKK YPTVQ T+WTF+PVVGWIN+ YVPL FRVI HSLVA  WGIFL LRA
Sbjct: 121 PWTLVRERIKKTYPTVQLTAWTFFPVVGWINYKYVPLHFRVILHSLVAFFWGIFLTLRA 179

May be involved in the metabolism of reactive oxygen species.
Arabidopsis thaliana (taxid: 3702)

>sp|Q54GD8|PX24C_DICDI PXMP2/4 family protein 3 OS=Dictyostelium discoideum GN=DDB_G0290223 PE=3 SV=1

 Score =  102 bits (254), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 61/172 (35%), Positives = 103/172 (59%), Gaps = 9/172 (5%)

Query: 12  YLIQLQQHPLRTKAITAGVLSAISDIVAQKLTGIQKLQLRRLLLKVLFGCAYLGPFGHFL 71
           Y+ +L+  P++TKA+T+  LS IS +VAQK    +K+    ++   ++G     P  H+ 
Sbjct: 17  YMKKLKSKPIQTKALTSATLSFISSVVAQKFIEKKKINWNAVVKFTVWGLIS-SPLVHYW 75

Query: 72  HLILDKIFKGKKDTSTVAKKVVLEQLTSSPWNNLMFMIYYGV--VVEGRPWRDVKTKIKK 129
           H+ILD++FK  KD      K++++QL  +P+ N+ F   Y V  +++G+P + +  K+  
Sbjct: 76  HIILDRLFKNIKDKYQSWGKLIVDQLVFAPFINIAF---YSVLAILDGKP-KSILFKLYF 131

Query: 130 D-YPTVQYTSWTFWPVVGWINHLYVPLQFRVIFHSLVAMCWGIFLNLRALPK 180
           D +PT++  SW  WP+   IN  +VP   RV+F +LV  CWGI+L++ A  K
Sbjct: 132 DLFPTLK-ASWKVWPLAQLINFRFVPSHLRVLFGNLVGFCWGIYLSILATKK 182

Dictyostelium discoideum (taxid: 44689)

>sp|Q2KIY1|PXMP2_BOVIN Peroxisomal membrane protein 2 OS=Bos taurus GN=PXMP2 PE=2 SV=3

 Score = 90.9 bits (224), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 56/181 (30%), Positives = 102/181 (56%), Gaps = 11/181 (6%)

Query: 1   MGSIAKKGLQQYLIQLQQHPLRTKAITAGVLSAISDIVAQ-------KLTGIQKLQLRRL 53
           +G + ++ L QYL  L+ +P+ TKA T+G+LSA+ + +AQ       K    QKL +   
Sbjct: 14  LGPLPRRALSQYLRLLRLYPVLTKAATSGILSALGNFLAQLIEKKQKKENCSQKLDVSGP 73

Query: 54  LLKVLFGCAYLGPFGHFLHLILDKIFKGKKDTSTVAKKVVLEQLTSSP-WNNLMFMIYYG 112
           L   ++G  + GP GHF +L++++    +   + + K+++L++L  +P + +L F++   
Sbjct: 74  LRYAIYGFFFTGPLGHFFYLLMERWIPSEVPLAGI-KRLLLDRLLFAPAFLSLFFLVMN- 131

Query: 113 VVVEGRPWRDVKTKIKKDYPTVQYTSWTFWPVVGWINHLYVPLQFRVIFHSLVAMCWGIF 172
             +EG+       K+K  +      +W  W  V +IN  Y+P+QFRV+F +LVA+ W  +
Sbjct: 132 -FLEGQDTAAFAAKMKSGFWPALRMNWRVWTPVQFININYIPVQFRVLFANLVALFWYAY 190

Query: 173 L 173
           L
Sbjct: 191 L 191

Seems to be involved in pore-forming activity and may contribute to the unspecific permeability of the peroxisomal membrane.

Bos taurus (taxid: 9913)

>sp|Q54FR4|PX24D_DICDI PXMP2/4 family protein 4 OS=Dictyostelium discoideum GN=DDB_G0290631 PE=3 SV=1

 Score = 90.1 bits (222), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 55/168 (32%), Positives = 86/168 (51%), Gaps = 6/168 (3%)

Query: 10  QQYLIQLQQHPLRTKAITAGVLSAISDIVAQKL----TGIQKLQLRRLLLKVLFGCAYLG 65
             YL QL ++P+ TKA+T+G L  ISD + Q +       +K   +R +   +FG A  G
Sbjct: 13  SHYLSQLHKYPVATKAVTSGFLYLISDSLVQGIELSRDKDKKYDFKRSMRMAVFGFAVTG 72

Query: 66  PFGHFLHLILDKIFKGKKDTSTVAKKVVLEQLTSSPWNNLMFMIYYGVVVEGRPWRDVKT 125
           P  H+    LDK F  KK       K+ ++Q+  SP  N +F    G++ EG+   D+  
Sbjct: 73  PLFHYWFKYLDKHFP-KKSYRHAFIKLTIDQVVCSPVFNFLFFSGMGIL-EGKSKDDIVE 130

Query: 126 KIKKDYPTVQYTSWTFWPVVGWINHLYVPLQFRVIFHSLVAMCWGIFL 173
           K+KKD+ T   +    WP + ++N  Y+    RV F ++  + WG FL
Sbjct: 131 KLKKDWLTTYVSDCVVWPFINFVNFAYISSIHRVTFMNVCNIGWGAFL 178

Dictyostelium discoideum (taxid: 44689)

>sp|Q07066|PXMP2_RAT Peroxisomal membrane protein 2 OS=Rattus norvegicus GN=Pxmp2 PE=1 SV=2

 Score = 86.7 bits (213), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 56/177 (31%), Positives = 104/177 (58%), Gaps = 9/177 (5%)

Query: 3   SIAKKGLQQYLIQLQQHPLRTKAITAGVLSAISDIVAQKLTGIQK-----LQLRRLLLKV 57
           S+ K+ L QYL+ L+ +P+ TKA+++G+LSA+ +++AQ +   QK     L++  LL  +
Sbjct: 16  SLPKRALAQYLLFLKFYPVVTKAVSSGILSALGNLLAQMIEKKQKKDSRSLEVSGLLRYL 75

Query: 58  LFGCAYLGPFGHFLHLILDKIFKGKKDTSTVAKKVVLEQLTSSPWNNLMFMIYYGVVVEG 117
           ++G    GP  H+L+L ++     +   + V K+++L++L  +P   L+F      ++EG
Sbjct: 76  VYGLFVTGPLSHYLYLFMEYWVPPEVPWARV-KRLLLDRLFFAPTFLLLFFFVMN-LLEG 133

Query: 118 RPWRDVKTKIKKDY-PTVQYTSWTFWPVVGWINHLYVPLQFRVIFHSLVAMCWGIFL 173
           +       K++  + P +Q  +W  W  + +IN  YVPLQFRV+F ++ A+ W  +L
Sbjct: 134 KNISVFVAKMRSGFWPALQ-MNWRMWTPLQFININYVPLQFRVLFANMAALFWYAYL 189

Seems to be involved in pore-forming activity and may contribute to the unspecific permeability of the peroxisomal membrane.

Rattus norvegicus (taxid: 10116)

>sp|Q5BK62|MPV17_RAT Protein Mpv17 OS=Rattus norvegicus GN=Mpv17 PE=2 SV=1

 Score = 84.3 bits (207), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 53/171 (30%), Positives = 87/171 (50%), Gaps = 5/171 (2%)

Query: 10  QQYLIQLQQHPLRTKAITAGVLSAISDIVAQKLT---GIQKLQLRRLLLKVLFGCAYLGP 66
           + Y   L  HP + + +TAG L  + DI++Q+L    G+Q+ Q  R L     GC ++GP
Sbjct: 5   RAYQRALAAHPWKVQVLTAGSLMGLGDIISQQLVERRGLQQHQTGRTLTMASLGCGFVGP 64

Query: 67  FGHFLHLILDKIFKGKKDTSTVAKKVVLEQLTSSPWNNLMFMIYYGVVVEGRPWRDVKTK 126
                + +LD +  G    + + KK++L+Q   +P     F+   GV+  G   +D   K
Sbjct: 65  VVGGWYRVLDHLIPGTTKVNAL-KKMLLDQGGFAPCFLGCFLPLVGVL-NGMSAQDNWAK 122

Query: 127 IKKDYPTVQYTSWTFWPVVGWINHLYVPLQFRVIFHSLVAMCWGIFLNLRA 177
           +K+DYP    T++  WP V   N   VPL +R+     VA+ W  +L+ +A
Sbjct: 123 LKRDYPDALITNYYLWPAVQLANFYLVPLHYRLAVVQCVAVVWNSYLSWKA 173

Involved in mitochondria homeostasis. May be involved in the metabolism of reactive oxygen species and control of oxidative phosphorylation and mitochondrial DNA (mtDNA) maintenance.

Rattus norvegicus (taxid: 10116)

>sp|P19258|MPV17_MOUSE Protein Mpv17 OS=Mus musculus GN=Mpv17 PE=2 SV=1

 Score = 83.6 bits (205), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 52/171 (30%), Positives = 87/171 (50%), Gaps = 5/171 (2%)

Query: 10  QQYLIQLQQHPLRTKAITAGVLSAISDIVAQKLT---GIQKLQLRRLLLKVLFGCAYLGP 66
           + Y   L  HP + + +TAG L  + D+++Q+L    G+Q+ Q  R L  V  GC ++GP
Sbjct: 5   RAYQRALAAHPWKVQVLTAGSLMGVGDMISQQLVERRGLQQHQAGRTLTMVSLGCGFVGP 64

Query: 67  FGHFLHLILDKIFKGKKDTSTVAKKVVLEQLTSSPWNNLMFMIYYGVVVEGRPWRDVKTK 126
                + +LD +  G      + KK++L+Q   +P     F+   G++  G   +D   K
Sbjct: 65  VVGGWYKVLDHLIPGTTKVHAL-KKMLLDQGGFAPCFLGCFLPLVGIL-NGMSAQDNWAK 122

Query: 127 IKKDYPTVQYTSWTFWPVVGWINHLYVPLQFRVIFHSLVAMCWGIFLNLRA 177
           +K+DYP    T++  WP V   N   VPL +R+     VA+ W  +L+ +A
Sbjct: 123 LKRDYPDALITNYYLWPAVQLANFYLVPLHYRLAVVQCVAIVWNSYLSWKA 173

Involved in mitochondria homeostasis. May be involved in the metabolism of reactive oxygen species and control of oxidative phosphorylation and mitochondrial DNA (mtDNA) maintenance.

Mus musculus (taxid: 10090)

>sp|P39210|MPV17_HUMAN Protein Mpv17 OS=Homo sapiens GN=MPV17 PE=1 SV=1

 Score = 82.0 bits (201), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 52/171 (30%), Positives = 86/171 (50%), Gaps = 5/171 (2%)

Query: 10  QQYLIQLQQHPLRTKAITAGVLSAISDIVAQKLT---GIQKLQLRRLLLKVLFGCAYLGP 66
           + Y   L  HP + + +TAG L  + DI++Q+L    G+Q+ Q  R L  V  GC ++GP
Sbjct: 5   RAYQRALAAHPWKVQVLTAGSLMGLGDIISQQLVERRGLQEHQRGRTLTMVSLGCGFVGP 64

Query: 67  FGHFLHLILDKIFKGKKDTSTVAKKVVLEQLTSSPWNNLMFMIYYGVVVEGRPWRDVKTK 126
                + +LD+   G      + KK++L+Q   +P     F+   G +  G   +D   K
Sbjct: 65  VVGGWYKVLDRFIPGTTKVDAL-KKMLLDQGGFAPCFLGCFLPLVGAL-NGLSAQDNWAK 122

Query: 127 IKKDYPTVQYTSWTFWPVVGWINHLYVPLQFRVIFHSLVAMCWGIFLNLRA 177
           +++DYP    T++  WP V   N   VPL +R+     VA+ W  +L+ +A
Sbjct: 123 LQRDYPDALITNYYLWPAVQLANFYLVPLHYRLAVVQCVAVIWNSYLSWKA 173

Involved in mitochondria homeostasis. May be involved in the metabolism of reactive oxygen species and control of oxidative phosphorylation and mitochondrial DNA (mtDNA) maintenance.

Homo sapiens (taxid: 9606)

>sp|Q2KIN6|MPV17_BOVIN Protein Mpv17 OS=Bos taurus GN=MPV17 PE=2 SV=1

 Score = 79.3 bits (194), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 85/171 (49%), Gaps = 5/171 (2%)

Query: 10  QQYLIQLQQHPLRTKAITAGVLSAISDIVAQKLT---GIQKLQLRRLLLKVLFGCAYLGP 66
           + Y   L  HP + + +TAG L  + D+++Q+L    G+Q  Q  R L     GC ++GP
Sbjct: 5   RAYQRALTAHPWKVQVLTAGSLMGLGDVISQQLVERRGLQAHQAGRTLTMASLGCGFVGP 64

Query: 67  FGHFLHLILDKIFKGKKDTSTVAKKVVLEQLTSSPWNNLMFMIYYGVVVEGRPWRDVKTK 126
                + +LD++  G      + KK++L+Q   +P     F+   G +  G   +D   K
Sbjct: 65  VVGGWYRVLDRLIPGTTKVDAL-KKMLLDQGGFAPCFLGCFLPLVGTL-NGLSAQDNWAK 122

Query: 127 IKKDYPTVQYTSWTFWPVVGWINHLYVPLQFRVIFHSLVAMCWGIFLNLRA 177
           +++D+P    T++  WP V   N   VPL +R+     VA+ W  +L+ +A
Sbjct: 123 LQRDFPDALITNYYLWPAVQLANFYLVPLHYRLAVVQCVAVIWNSYLSWKA 173

Involved in mitochondria homeostasis. May be involved in the metabolism of reactive oxygen species and control of oxidative phosphorylation and mitochondrial DNA (mtDNA) maintenance.

Bos taurus (taxid: 9913)

>sp|Q9NR77|PXMP2_HUMAN Peroxisomal membrane protein 2 OS=Homo sapiens GN=PXMP2 PE=1 SV=3

 Score = 75.5 bits (184), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/179 (26%), Positives = 93/179 (51%), Gaps = 8/179 (4%)

Query: 1   MGSIAKKGLQQYLIQLQQHPLRTKAITAGVLSAISDIVAQKLTGIQKLQLRRL------L 54
           +G++ ++ L QYL+ L+ +P+ TKA T+G+LSA+ + +AQ +   +K +  R       L
Sbjct: 14  LGALPRRALAQYLLFLRLYPVLTKAATSGILSALGNFLAQMIEKKRKKENSRSLDVGGPL 73

Query: 55  LKVLFGCAYLGPFGHFLHLILDKIFKGKKDTSTVAKKVVLEQLTSSPWNNLMFMIYYGVV 114
              ++G  + GP  HF +  ++     +   + + + ++   + +  +  L F+I     
Sbjct: 74  RYAVYGFFFTGPLSHFFYFFMEHWIPPEVPLAGLRRLLLDRLVFAPAFLMLFFLIM--NF 131

Query: 115 VEGRPWRDVKTKIKKDYPTVQYTSWTFWPVVGWINHLYVPLQFRVIFHSLVAMCWGIFL 173
           +EG+       K++  +      +W  W  + +IN  YVPL+FRV+F +L A+ W  +L
Sbjct: 132 LEGKDASAFAAKMRGGFWPALRMNWRVWTPLQFININYVPLKFRVLFANLAALFWYAYL 190

Seems to be involved in pore-forming activity and may contribute to the unspecific permeability of the peroxisomal membrane.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	182
351723819	185	uncharacterized protein LOC100499909 [Gl	0.972	0.956	0.790	2e-80
356532038	185	PREDICTED: peroxisomal membrane protein	0.994	0.978	0.767	7e-79
255637621	185	unknown [Glycine max]	0.972	0.956	0.768	3e-77
224113703	185	predicted protein [Populus trichocarpa]	0.972	0.956	0.790	4e-76
449433976	185	PREDICTED: peroxisomal membrane protein	0.972	0.956	0.700	4e-73
449523477	185	PREDICTED: peroxisomal membrane protein	0.972	0.956	0.694	2e-72
242064532	205	hypothetical protein SORBIDRAFT_04g00800	0.967	0.858	0.710	6e-72
449458842	183	PREDICTED: peroxisomal membrane protein	0.972	0.967	0.706	7e-72
125538678	206	hypothetical protein OsI_06429 [Oryza sa	0.961	0.849	0.708	9e-72
115445127	205	Os02g0226000 [Oryza sativa Japonica Grou	0.961	0.853	0.708	2e-71

>gi|351723819|ref|NP_001237804.1| uncharacterized protein LOC100499909 [Glycine max] gi|255627583|gb|ACU14136.1| unknown [Glycine max]

 Score =  303 bits (775), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 140/177 (79%), Positives = 161/177 (90%)

Query: 1   MGSIAKKGLQQYLIQLQQHPLRTKAITAGVLSAISDIVAQKLTGIQKLQLRRLLLKVLFG 60
           MGS+AKKGL  Y+ QLQQHPLRTK ITAGVLSAISD+V+QKLTGIQKLQL+RLL KV+FG
Sbjct: 1   MGSLAKKGLNNYVKQLQQHPLRTKVITAGVLSAISDVVSQKLTGIQKLQLKRLLFKVIFG 60

Query: 61  CAYLGPFGHFLHLILDKIFKGKKDTSTVAKKVVLEQLTSSPWNNLMFMIYYGVVVEGRPW 120
            AYLGPFGHF HLILDKIFKGK+D+ TVAKKV++EQLTS+PWNNL+FMIYYG+VVEG+PW
Sbjct: 61  AAYLGPFGHFFHLILDKIFKGKRDSKTVAKKVLIEQLTSNPWNNLLFMIYYGLVVEGQPW 120

Query: 121 RDVKTKIKKDYPTVQYTSWTFWPVVGWINHLYVPLQFRVIFHSLVAMCWGIFLNLRA 177
            +VK K+KKDYP+VQYTSWT WPVVGWINH ++PL FRV+F SLVA  WG+FLNLRA
Sbjct: 121 VNVKAKVKKDYPSVQYTSWTVWPVVGWINHKFMPLHFRVVFQSLVAFFWGVFLNLRA 177

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356532038|ref|XP_003534581.1| PREDICTED: peroxisomal membrane protein PMP22-like [Glycine max]

 Score =  298 bits (763), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 139/181 (76%), Positives = 161/181 (88%)

Query: 1   MGSIAKKGLQQYLIQLQQHPLRTKAITAGVLSAISDIVAQKLTGIQKLQLRRLLLKVLFG 60
           MGS+AKKGL  Y+ QLQQHPLRTK ITAGVLSAISD+V+QKLTGIQK+QL+RLL KV+FG
Sbjct: 1   MGSLAKKGLNNYVKQLQQHPLRTKVITAGVLSAISDVVSQKLTGIQKIQLKRLLFKVIFG 60

Query: 61  CAYLGPFGHFLHLILDKIFKGKKDTSTVAKKVVLEQLTSSPWNNLMFMIYYGVVVEGRPW 120
            AYLGPFGHF HLILDKIFKGK+D+ TVAKKV++EQLTS+PWNNL+FMIYYG+VVEG+PW
Sbjct: 61  AAYLGPFGHFFHLILDKIFKGKRDSKTVAKKVLIEQLTSNPWNNLLFMIYYGLVVEGQPW 120

Query: 121 RDVKTKIKKDYPTVQYTSWTFWPVVGWINHLYVPLQFRVIFHSLVAMCWGIFLNLRALPK 180
            +VK K+KKDY +VQYTSWT WPVVGWINH ++PL FRV+F SLVA  WG+FLNLRA   
Sbjct: 121 VNVKAKVKKDYLSVQYTSWTVWPVVGWINHKFMPLHFRVVFQSLVAFFWGVFLNLRARSM 180

Query: 181 A 181
           A
Sbjct: 181 A 181

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255637621|gb|ACU19135.1| unknown [Glycine max]

 Score =  293 bits (749), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 136/177 (76%), Positives = 158/177 (89%)

Query: 1   MGSIAKKGLQQYLIQLQQHPLRTKAITAGVLSAISDIVAQKLTGIQKLQLRRLLLKVLFG 60
           MGS+AKKGL  Y+ QLQQHPLRTK ITAGVLSAISD+V+QKLTGIQK+QL+RLL KV+FG
Sbjct: 1   MGSLAKKGLNNYVKQLQQHPLRTKVITAGVLSAISDVVSQKLTGIQKIQLKRLLFKVIFG 60

Query: 61  CAYLGPFGHFLHLILDKIFKGKKDTSTVAKKVVLEQLTSSPWNNLMFMIYYGVVVEGRPW 120
            AY GPFGH  HLILDKIFKGK+D+ TVAKKV++EQLTS+PWNNL+FMIYYG+VVEG+PW
Sbjct: 61  AAYPGPFGHLFHLILDKIFKGKRDSKTVAKKVLIEQLTSNPWNNLLFMIYYGLVVEGQPW 120

Query: 121 RDVKTKIKKDYPTVQYTSWTFWPVVGWINHLYVPLQFRVIFHSLVAMCWGIFLNLRA 177
            +VK K+KKDY +VQYTSWT WPVVGWINH ++PL FRV+F SLVA  WG+FLNLRA
Sbjct: 121 VNVKAKVKKDYLSVQYTSWTVWPVVGWINHKFMPLHFRVVFQSLVAFFWGVFLNLRA 177

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224113703|ref|XP_002316547.1| predicted protein [Populus trichocarpa] gi|222859612|gb|EEE97159.1| predicted protein [Populus trichocarpa]

 Score =  289 bits (739), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 140/177 (79%), Positives = 168/177 (94%)

Query: 1   MGSIAKKGLQQYLIQLQQHPLRTKAITAGVLSAISDIVAQKLTGIQKLQLRRLLLKVLFG 60
           MGS+AKKGLQQY++QLQQHPLRTKAITAGVLSA+SDIV+QKL+GIQKLQ++R+LLKVLFG
Sbjct: 1   MGSVAKKGLQQYMLQLQQHPLRTKAITAGVLSALSDIVSQKLSGIQKLQIKRILLKVLFG 60

Query: 61  CAYLGPFGHFLHLILDKIFKGKKDTSTVAKKVVLEQLTSSPWNNLMFMIYYGVVVEGRPW 120
             YLGPFGH+LH++LDK+FKGKKDT+TVAKKV +EQLT+SPWNNL+FM+YYG+V++GRPW
Sbjct: 61  FGYLGPFGHYLHILLDKLFKGKKDTTTVAKKVAVEQLTASPWNNLVFMVYYGMVIDGRPW 120

Query: 121 RDVKTKIKKDYPTVQYTSWTFWPVVGWINHLYVPLQFRVIFHSLVAMCWGIFLNLRA 177
             VKTK+KK+YP VQ+TSWTFWPVVGW+NH Y+P QFRVIFHSL+A+ WGIFLNLRA
Sbjct: 121 LQVKTKLKKEYPAVQFTSWTFWPVVGWVNHQYIPQQFRVIFHSLIAVGWGIFLNLRA 177

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449433976|ref|XP_004134772.1| PREDICTED: peroxisomal membrane protein PMP22-like [Cucumis sativus]

 Score =  279 bits (713), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 124/177 (70%), Positives = 153/177 (86%)

Query: 1   MGSIAKKGLQQYLIQLQQHPLRTKAITAGVLSAISDIVAQKLTGIQKLQLRRLLLKVLFG 60
           MGS+AKK L +YL QL  HPLRTK IT+GVL A+SD+ +QKLTGIQKLQL+R+LLKVL+G
Sbjct: 1   MGSLAKKALNKYLSQLNHHPLRTKVITSGVLVALSDVTSQKLTGIQKLQLKRILLKVLYG 60

Query: 61  CAYLGPFGHFLHLILDKIFKGKKDTSTVAKKVVLEQLTSSPWNNLMFMIYYGVVVEGRPW 120
           C YLGPF H+LH ILDKIF GK+DT TVAKKV LEQLT+SPWN+ +F++YYG+++EGR W
Sbjct: 61  CLYLGPFAHYLHQILDKIFHGKRDTKTVAKKVALEQLTASPWNHFVFLVYYGLIIEGRTW 120

Query: 121 RDVKTKIKKDYPTVQYTSWTFWPVVGWINHLYVPLQFRVIFHSLVAMCWGIFLNLRA 177
             VK K+KK++P++Q T+W FWP VGWINH ++PLQFRVIFHSLVA CWG+FLN+RA
Sbjct: 121 VQVKAKVKKEFPSLQLTAWMFWPFVGWINHQFMPLQFRVIFHSLVAFCWGLFLNVRA 177

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449523477|ref|XP_004168750.1| PREDICTED: peroxisomal membrane protein PMP22-like [Cucumis sativus]

 Score =  276 bits (706), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 123/177 (69%), Positives = 152/177 (85%)

Query: 1   MGSIAKKGLQQYLIQLQQHPLRTKAITAGVLSAISDIVAQKLTGIQKLQLRRLLLKVLFG 60
           MGS+AKK L +YL QL  HPLRTK IT+GVL A+SD+ +QKLTGIQKLQL+R+LLKVL+G
Sbjct: 1   MGSLAKKALNKYLSQLNHHPLRTKVITSGVLVALSDVTSQKLTGIQKLQLKRILLKVLYG 60

Query: 61  CAYLGPFGHFLHLILDKIFKGKKDTSTVAKKVVLEQLTSSPWNNLMFMIYYGVVVEGRPW 120
           C YLGPF H+LH ILDKIF GK+DT TVAKKV LEQLT+SPWN+ +F++YYG+++EGR W
Sbjct: 61  CLYLGPFAHYLHQILDKIFHGKRDTKTVAKKVALEQLTASPWNHFVFLVYYGLIIEGRTW 120

Query: 121 RDVKTKIKKDYPTVQYTSWTFWPVVGWINHLYVPLQFRVIFHSLVAMCWGIFLNLRA 177
             VK K+KK++P++Q T+W FWP VGWINH ++PLQ RVIFHSLVA CWG+FLN+RA
Sbjct: 121 VQVKAKVKKEFPSLQLTAWMFWPFVGWINHQFMPLQLRVIFHSLVAFCWGLFLNVRA 177

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242064532|ref|XP_002453555.1| hypothetical protein SORBIDRAFT_04g008000 [Sorghum bicolor] gi|241933386|gb|EES06531.1| hypothetical protein SORBIDRAFT_04g008000 [Sorghum bicolor]

 Score =  275 bits (703), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 125/176 (71%), Positives = 153/176 (86%)

Query: 2   GSIAKKGLQQYLIQLQQHPLRTKAITAGVLSAISDIVAQKLTGIQKLQLRRLLLKVLFGC 61
           GS+A++  +QYL+QLQQHPLRTK ITAG L+ +SD VAQKL+G QK++ RRLLLK+LFG 
Sbjct: 22  GSLARRAWRQYLLQLQQHPLRTKMITAGCLAGVSDTVAQKLSGYQKIEKRRLLLKMLFGF 81

Query: 62  AYLGPFGHFLHLILDKIFKGKKDTSTVAKKVVLEQLTSSPWNNLMFMIYYGVVVEGRPWR 121
           AY GPFGHFLH ILD IF+GKKDT T+AKKV+LEQ+TSSPWNN++F+ YYG VVE RP +
Sbjct: 82  AYGGPFGHFLHKILDYIFQGKKDTKTIAKKVLLEQVTSSPWNNILFLFYYGYVVERRPLK 141

Query: 122 DVKTKIKKDYPTVQYTSWTFWPVVGWINHLYVPLQFRVIFHSLVAMCWGIFLNLRA 177
           +V T++KK YP+VQ ++W FWP+VGWINH Y+PLQFRVIFHS+VA CWGIFLNLRA
Sbjct: 142 EVTTRVKKQYPSVQLSAWMFWPIVGWINHQYMPLQFRVIFHSVVACCWGIFLNLRA 197

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458842|ref|XP_004147155.1| PREDICTED: peroxisomal membrane protein PMP22-like [Cucumis sativus]

 Score =  275 bits (702), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 125/177 (70%), Positives = 153/177 (86%)

Query: 1   MGSIAKKGLQQYLIQLQQHPLRTKAITAGVLSAISDIVAQKLTGIQKLQLRRLLLKVLFG 60
           M SI  +  Q YL+QLQ++PLRTKAITAGVL+ ISD VAQK++GI+KLQ RRLLL +L+G
Sbjct: 1   MSSIVTEAWQGYLLQLQKNPLRTKAITAGVLAGISDSVAQKISGIKKLQFRRLLLLMLYG 60

Query: 61  CAYLGPFGHFLHLILDKIFKGKKDTSTVAKKVVLEQLTSSPWNNLMFMIYYGVVVEGRPW 120
            AY GPFGHFLH ++D+IFKGKK  +TVAKKV+LEQ+TSSPWNNL FM+YYG+VVEGRPW
Sbjct: 61  FAYAGPFGHFLHKLMDRIFKGKKGNTTVAKKVLLEQVTSSPWNNLFFMMYYGLVVEGRPW 120

Query: 121 RDVKTKIKKDYPTVQYTSWTFWPVVGWINHLYVPLQFRVIFHSLVAMCWGIFLNLRA 177
             VK K++KDYPT+Q T+W FWP+VGW+N+ Y+P+QFRVIFHS VA CWGIFLNL+A
Sbjct: 121 SLVKAKVRKDYPTIQLTAWRFWPIVGWVNYQYMPIQFRVIFHSFVASCWGIFLNLKA 177

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|125538678|gb|EAY85073.1| hypothetical protein OsI_06429 [Oryza sativa Indica Group]

 Score =  274 bits (701), Expect = 9e-72,   Method: Compositional matrix adjust.
 Identities = 124/175 (70%), Positives = 152/175 (86%)

Query: 3   SIAKKGLQQYLIQLQQHPLRTKAITAGVLSAISDIVAQKLTGIQKLQLRRLLLKVLFGCA 62
           S+A++  +QYL QLQ HPLRTK ITAG L+ +SD VAQKL+G Q+++ RRLLLK+LFG A
Sbjct: 24  SLARRAWRQYLRQLQLHPLRTKMITAGCLAGVSDSVAQKLSGYQRIEKRRLLLKMLFGFA 83

Query: 63  YLGPFGHFLHLILDKIFKGKKDTSTVAKKVVLEQLTSSPWNNLMFMIYYGVVVEGRPWRD 122
           Y GPFGHFLH +LD IFKGKKDT T+AKKV+LEQ+TSSPWNNL+F+ YYG VVE RP+++
Sbjct: 84  YGGPFGHFLHKVLDYIFKGKKDTKTIAKKVLLEQITSSPWNNLLFLFYYGYVVERRPFKE 143

Query: 123 VKTKIKKDYPTVQYTSWTFWPVVGWINHLYVPLQFRVIFHSLVAMCWGIFLNLRA 177
           VKT++KK YP+VQ ++W FWP+VGWINH+Y+PLQFRVIFHS VA CWGIFLNLRA
Sbjct: 144 VKTRVKKQYPSVQLSAWMFWPIVGWINHMYMPLQFRVIFHSFVACCWGIFLNLRA 198

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115445127|ref|NP_001046343.1| Os02g0226000 [Oryza sativa Japonica Group] gi|49388530|dbj|BAD25652.1| putative peroxisomal membrane protein 22 kDa [Oryza sativa Japonica Group] gi|113535874|dbj|BAF08257.1| Os02g0226000 [Oryza sativa Japonica Group] gi|125581366|gb|EAZ22297.1| hypothetical protein OsJ_05949 [Oryza sativa Japonica Group] gi|215768509|dbj|BAH00738.1| unnamed protein product [Oryza sativa Japonica Group]

 Score =  273 bits (699), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 124/175 (70%), Positives = 152/175 (86%)

Query: 3   SIAKKGLQQYLIQLQQHPLRTKAITAGVLSAISDIVAQKLTGIQKLQLRRLLLKVLFGCA 62
           S+A++  +QYL QLQ HPLRTK ITAG L+ +SD VAQKL+G Q+++ RRLLLK+LFG A
Sbjct: 23  SLARRAWRQYLRQLQLHPLRTKMITAGCLAGVSDSVAQKLSGYQRIEKRRLLLKMLFGFA 82

Query: 63  YLGPFGHFLHLILDKIFKGKKDTSTVAKKVVLEQLTSSPWNNLMFMIYYGVVVEGRPWRD 122
           Y GPFGHFLH +LD IFKGKKDT T+AKKV+LEQ+TSSPWNNL+F+ YYG VVE RP+++
Sbjct: 83  YGGPFGHFLHKVLDYIFKGKKDTKTIAKKVLLEQITSSPWNNLLFLFYYGYVVERRPFKE 142

Query: 123 VKTKIKKDYPTVQYTSWTFWPVVGWINHLYVPLQFRVIFHSLVAMCWGIFLNLRA 177
           VKT++KK YP+VQ ++W FWP+VGWINH+Y+PLQFRVIFHS VA CWGIFLNLRA
Sbjct: 143 VKTRVKKQYPSVQLSAWMFWPIVGWINHMYMPLQFRVIFHSFVACCWGIFLNLRA 197

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	182
TAIR|locus:1009023385	185	AT4G14305 "AT4G14305" [Arabido	0.972	0.956	0.644	3.8e-62
TAIR|locus:2137124	190	PMP22 [Arabidopsis thaliana (t	0.972	0.931	0.670	1.7e-59
DICTYBASE|DDB_G0290223	184	DDB_G0290223 "pmp22 family pro	0.895	0.885	0.348	4.8e-23
MGI|MGI:107487	194	Pxmp2 "peroxisomal membrane pr	0.934	0.876	0.290	3.6e-18
ZFIN|ZDB-GENE-040912-184	194	zgc:92599 "zgc:92599" [Danio r	0.928	0.871	0.288	4.6e-18
UNIPROTKB|Q2KIY1	196	PXMP2 "Peroxisomal membrane pr	0.934	0.867	0.287	5.8e-18
UNIPROTKB|G3V9N2	194	Pxmp2 "Peroxisomal membrane pr	0.934	0.876	0.290	1.2e-17
DICTYBASE|DDB_G0290631	185	DDB_G0290631 "pmp22 family pro	0.912	0.897	0.313	2.5e-17
TAIR|locus:2167816	254	AT5G43140 "AT5G43140" [Arabido	0.912	0.653	0.290	3.2e-17
RGD|61812	194	Pxmp2 "peroxisomal membrane pr	0.923	0.865	0.288	8.6e-17

TAIR|locus:1009023385 AT4G14305 "AT4G14305" [Arabidopsis thaliana (taxid:3702)]

 Score = 635 (228.6 bits), Expect = 3.8e-62, P = 3.8e-62
 Identities = 114/177 (64%), Positives = 138/177 (77%)

Query:     1 MGSIAKKGLQQYLIQLQQHPLRTKAITAGVLSAISDIVAQKLTGIXXXXXXXXXXXVLFG 60
             M  +AK   ++YLIQLQ HPLRTKAITAGVL+  SD +AQK++G+           +L+G
Sbjct:     1 MSDLAKDAWRKYLIQLQAHPLRTKAITAGVLAGCSDAIAQKISGVKRIQFRRLLLLMLYG 60

Query:    61 CAYLGPFGHFLHLILDKIFKGKKDTSTVAKKVVLEQLTSSPWNNLMFMIYYGVVVEGRPW 120
              AY GPFGHF H ++D IFKGKK  STVAKKV+LEQLTSSPWNN +FM YYG+VVEGRPW
Sbjct:    61 FAYGGPFGHFFHKLMDTIFKGKKGNSTVAKKVLLEQLTSSPWNNFLFMSYYGLVVEGRPW 120

Query:   121 RDVKTKIKKDYPTVQYTSWTFWPVVGWINHLYVPLQFRVIFHSLVAMCWGIFLNLRA 177
             + VK K+ KDYPT+Q T+W FWP+VGW+N+ YVPLQFRV+F S VA CW IFLNL+A
Sbjct:   121 KLVKHKLGKDYPTIQLTAWKFWPIVGWVNYQYVPLQFRVLFSSFVASCWSIFLNLKA 177

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA

TAIR|locus:2137124 PMP22 [Arabidopsis thaliana (taxid:3702)]

 Score = 610 (219.8 bits), Expect = 1.7e-59, P = 1.7e-59
 Identities = 120/179 (67%), Positives = 136/179 (75%)

Query:     1 MGSIAKKG--LQQYLIQLQQHPLRTKAITAGVLSAISDIVAQKLTGIXXXXXXXXXXXVL 58
             MGS   K   LQ+YL QLQQHPLRTKAITAGVLS +SD+V+QKL+GI           V+
Sbjct:     1 MGSSPPKKTTLQRYLSQLQQHPLRTKAITAGVLSGVSDVVSQKLSGIQKIQLRRVLLKVI 60

Query:    59 FGCAYLGPFGHFLHLILDKIFKGKKDTSTVAKKVVLEQLTSSPWNNLMFMIYYGVVVEGR 118
             F   +LGP GHF H  LDK FKGKKDT TVAKKV+LEQLT SP N+L+FMIYYGVV+E  
Sbjct:    61 FAGGFLGPAGHFFHTYLDKFFKGKKDTQTVAKKVILEQLTLSPLNHLLFMIYYGVVIERT 120

Query:   119 PWRDVKTKIKKDYPTVQYTSWTFWPVVGWINHLYVPLQFRVIFHSLVAMCWGIFLNLRA 177
             PW  V+ +IKK YPTVQ T+WTF+PVVGWIN+ YVPL FRVI HSLVA  WGIFL LRA
Sbjct:   121 PWTLVRERIKKTYPTVQLTAWTFFPVVGWINYKYVPLHFRVILHSLVAFFWGIFLTLRA 179

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA

GO:0005778 "peroxisomal membrane" evidence=IDA

DICTYBASE|DDB_G0290223 DDB_G0290223 "pmp22 family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 266 (98.7 bits), Expect = 4.8e-23, P = 4.8e-23
 Identities = 60/172 (34%), Positives = 98/172 (56%)

Query:    12 YLIQLQQHPLRTKAITAGVLSAISDIVAQKLTGIXXXXXXXXXXXVLFGCAYLGPFGHFL 71
             Y+ +L+  P++TKA+T+  LS IS +VAQK                ++G     P  H+ 
Sbjct:    17 YMKKLKSKPIQTKALTSATLSFISSVVAQKFIEKKKINWNAVVKFTVWGLIS-SPLVHYW 75

Query:    72 HLILDKIFKGKKDTSTVAKKVVLEQLTSSPWNNLMFMIYYGV--VVEGRPWRDVKTKIKK 129
             H+ILD++FK  KD      K++++QL  +P+ N+ F   Y V  +++G+P + +  K+  
Sbjct:    76 HIILDRLFKNIKDKYQSWGKLIVDQLVFAPFINIAF---YSVLAILDGKP-KSILFKLYF 131

Query:   130 D-YPTVQYTSWTFWPVVGWINHLYVPLQFRVIFHSLVAMCWGIFLNLRALPK 180
             D +PT++  SW  WP+   IN  +VP   RV+F +LV  CWGI+L++ A  K
Sbjct:   132 DLFPTLK-ASWKVWPLAQLINFRFVPSHLRVLFGNLVGFCWGIYLSILATKK 182

GO:0016021 "integral to membrane" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

MGI|MGI:107487 Pxmp2 "peroxisomal membrane protein 2" [Mus musculus (taxid:10090)]

 Score = 220 (82.5 bits), Expect = 3.6e-18, P = 3.6e-18
 Identities = 52/179 (29%), Positives = 100/179 (55%)

Query:     1 MGSIAKKGLQQYLIQLQQHPLRTKAITAGVLSAISDIVAQKLT-----GIXXXXXXXXXX 55
             +GS+ K+ L QYL+ L+ +P+ TKA+++G+LSA+ +++AQ +                  
Sbjct:    14 LGSLPKRALAQYLLLLKLYPVLTKAVSSGILSALGNLLAQTIEKKQRKDSRLLEVSGLLR 73

Query:    56 XVLFGCAYLGPFGHFLHLILDKIFKGKKDTSTVAKKVVLEQLTSSPWNNLMFMIYYGVVV 115
              +++G    GP  H+L+L ++     +   ++V K+++L++L  +P   L+F     ++ 
Sbjct:    74 YLVYGLFVTGPLSHYLYLFMEYSVPPEVPWASV-KRLLLDRLFFAPTFLLLFFFVMNLL- 131

Query:   116 EGRPWRDVKTKIKKDY-PTVQYTSWTFWPVVGWINHLYVPLQFRVIFHSLVAMCWGIFL 173
             EG+       K++  + P +Q  +W  W  + +IN  YVPLQFRV+F ++ A+ W  +L
Sbjct:   132 EGKNVSVFVAKMRSGFWPALQM-NWRMWTPLQFININYVPLQFRVLFANMAALFWYAYL 189

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=IDA

GO:0005777 "peroxisome" evidence=ISO

GO:0005778 "peroxisomal membrane" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0043234 "protein complex" evidence=ISO

ZFIN|ZDB-GENE-040912-184 zgc:92599 "zgc:92599" [Danio rerio (taxid:7955)]

 Score = 219 (82.2 bits), Expect = 4.6e-18, P = 4.6e-18
 Identities = 52/180 (28%), Positives = 96/180 (53%)

Query:     3 SIAKKGLQQYLIQLQQHPLRTKAITAGVLSAISDIVAQKLT---GIXXXXXXXXXXXV-- 57
             S+  + LQQYL  L+++P+ TK++T+G+LSA+ ++++Q L     +           +  
Sbjct:    12 SLLARALQQYLSLLKKYPIITKSVTSGILSALGNLLSQVLEYQKNVKENSPKKKISILGP 71

Query:    58 ----LFGCAYLGPFGHFLHLILDKIFKGKKDTSTVAKKVVLEQLTSSPWNNLMFMIYYGV 113
                 ++G    GP  H+ + +L+ +         + K+++LE+L  +P   L+F +    
Sbjct:    72 VHFAIYGLFITGPVSHYFYHLLEVLLPTTVPYCLI-KRLLLERLIFAPAFLLLFYVVMNA 130

Query:   114 VVEGRPWRDVKTKIKKDYPTVQYTSWTFWPVVGWINHLYVPLQFRVIFHSLVAMCWGIFL 173
             + EG+   DV+ K+K  Y      +W  W    +IN  YVP+QFRV+F ++VA+ W  +L
Sbjct:   131 L-EGKTLADVQNKLKTSYWPAMKMNWKVWTPFQFININYVPVQFRVLFANMVALFWYAYL 189

GO:0016021 "integral to membrane" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|Q2KIY1 PXMP2 "Peroxisomal membrane protein 2" [Bos taurus (taxid:9913)]

 Score = 218 (81.8 bits), Expect = 5.8e-18, P = 5.8e-18
 Identities = 52/181 (28%), Positives = 98/181 (54%)

Query:     1 MGSIAKKGLQQYLIQLQQHPLRTKAITAGVLSAISDIVAQKLTGIXXXXXXXXXXXV--- 57
             +G + ++ L QYL  L+ +P+ TKA T+G+LSA+ + +AQ +              V   
Sbjct:    14 LGPLPRRALSQYLRLLRLYPVLTKAATSGILSALGNFLAQLIEKKQKKENCSQKLDVSGP 73

Query:    58 ----LFGCAYLGPFGHFLHLILDKIFKGKKDTSTVAKKVVLEQLTSSP-WNNLMFMIYYG 112
                 ++G  + GP GHF +L++++    +   + + K+++L++L  +P + +L F++   
Sbjct:    74 LRYAIYGFFFTGPLGHFFYLLMERWIPSEVPLAGI-KRLLLDRLLFAPAFLSLFFLVMN- 131

Query:   113 VVVEGRPWRDVKTKIKKDYPTVQYTSWTFWPVVGWINHLYVPLQFRVIFHSLVAMCWGIF 172
               +EG+       K+K  +      +W  W  V +IN  Y+P+QFRV+F +LVA+ W  +
Sbjct:   132 -FLEGQDTAAFAAKMKSGFWPALRMNWRVWTPVQFININYIPVQFRVLFANLVALFWYAY 190

Query:   173 L 173
             L
Sbjct:   191 L 191

GO:0005778 "peroxisomal membrane" evidence=IEA

GO:0043234 "protein complex" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|G3V9N2 Pxmp2 "Peroxisomal membrane protein 2, isoform CRA_b" [Rattus norvegicus (taxid:10116)]

 Score = 215 (80.7 bits), Expect = 1.2e-17, P = 1.2e-17
 Identities = 52/179 (29%), Positives = 99/179 (55%)

Query:     1 MGSIAKKGLQQYLIQLQQHPLRTKAITAGVLSAISDIVAQKLT-----GIXXXXXXXXXX 55
             +GS+ K+ L QYL+ L+ +P+ TKA+++G+LSA+ +++AQ +                  
Sbjct:    14 LGSLPKRALAQYLLFLKFYPVVTKAVSSGILSALGNLLAQMIEKKQKKDSRSLEVSGLLR 73

Query:    56 XVLFGCAYLGPFGHFLHLILDKIFKGKKDTSTVAKKVVLEQLTSSPWNNLMFMIYYGVVV 115
              +++G    GP  H+L+L ++     +   + V K+++L++L  +P   L+F     ++ 
Sbjct:    74 YLVYGLFVTGPLSHYLYLFMEYWVPPEVPWARV-KRLLLDRLFFAPTFLLLFFFVMNLL- 131

Query:   116 EGRPWRDVKTKIKKDY-PTVQYTSWTFWPVVGWINHLYVPLQFRVIFHSLVAMCWGIFL 173
             EG+       K++  + P +Q  +W  W  + +IN  YVPLQFRV+F ++ A+ W  +L
Sbjct:   132 EGKNISVFVAKMRSGFWPALQM-NWRMWTPLQFININYVPLQFRVLFANMAALFWYAYL 189

GO:0005739 "mitochondrion" evidence=IEA

GO:0005778 "peroxisomal membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0043234 "protein complex" evidence=IEA

DICTYBASE|DDB_G0290631 DDB_G0290631 "pmp22 family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 212 (79.7 bits), Expect = 2.5e-17, P = 2.5e-17
 Identities = 54/172 (31%), Positives = 82/172 (47%)

Query:     6 KKGLQQYLIQLQQHPLRTKAITAGVLSAISDIVAQKLT----GIXXXXXXXXXXXVLFGC 61
             K     YL QL ++P+ TKA+T+G L  ISD + Q +                   +FG 
Sbjct:     9 KLAQSHYLSQLHKYPVATKAVTSGFLYLISDSLVQGIELSRDKDKKYDFKRSMRMAVFGF 68

Query:    62 AYLGPFGHFLHLILDKIFKGKKDTSTVAKKVVLEQLTSSPWNNLMFMIYYGVVVEGRPWR 121
             A  GP  H+    LDK F  KK       K+ ++Q+  SP  N +F    G++ EG+   
Sbjct:    69 AVTGPLFHYWFKYLDKHFP-KKSYRHAFIKLTIDQVVCSPVFNFLFFSGMGIL-EGKSKD 126

Query:   122 DVKTKIKKDYPTVQYTSWTFWPVVGWINHLYVPLQFRVIFHSLVAMCWGIFL 173
             D+  K+KKD+ T   +    WP + ++N  Y+    RV F ++  + WG FL
Sbjct:   127 DIVEKLKKDWLTTYVSDCVVWPFINFVNFAYISSIHRVTFMNVCNIGWGAFL 178

GO:0016021 "integral to membrane" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2167816 AT5G43140 "AT5G43140" [Arabidopsis thaliana (taxid:3702)]

 Score = 211 (79.3 bits), Expect = 3.2e-17, P = 3.2e-17
 Identities = 50/172 (29%), Positives = 84/172 (48%)

Query:     9 LQQYLIQLQQHPLRTKAITAGVLSAISDIVAQKLT--GIXXXXXXXXXXXVLFGCAYLGP 66
             L+ YL +L+ HP  TK+IT  V+   +D+ +Q +T                 FG  +LGP
Sbjct:    79 LRWYLRKLESHPFMTKSITTSVIYMAADLTSQMITMEPTGSFDLIRTARMASFGLIFLGP 138

Query:    67 FGHFLHLILDKIFKGKKDTSTVAKKVVLEQLTSSPWNNLMFMIYYGVVVEGRPWRDVKTK 126
               H     L KI   K+D  T  KK+++ Q+   P +N +F  Y    ++G    ++  +
Sbjct:   139 SQHLWFSYLSKILP-KRDVLTTFKKIMMGQVLFGPVSNTVFYSY-NAALQGENSEEIVAR 196

Query:   127 IKKDY-PTVQYTSWTFWPVVGWINHLYVPLQFRVIFHSLVAMCWGIFLNLRA 177
             +K+D  PT++     +WPV  ++   YVP+  + + +S  A  W I+L   A
Sbjct:   197 LKRDLLPTLK-NGLMYWPVCDFVTFKYVPVHLQPLMNSSCAYIWTIYLTYMA 247

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0005778 "peroxisomal membrane" evidence=ISS

GO:0008150 "biological_process" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA

RGD|61812 Pxmp2 "peroxisomal membrane protein 2" [Rattus norvegicus (taxid:10116)]

 Score = 207 (77.9 bits), Expect = 8.6e-17, P = 8.6e-17
 Identities = 51/177 (28%), Positives = 97/177 (54%)

Query:     3 SIAKKGLQQYLIQLQQHPLRTKAITAGVLSAISDIVAQKLT-----GIXXXXXXXXXXXV 57
             S+ K+ L QYL+ L+ +P+ TKA+++G+LSA+ +++AQ +                   +
Sbjct:    16 SLPKRALAQYLLFLKFYPVVTKAVSSGILSALGNLLAQMIEKKQKKDSRSLEVSGLLRYL 75

Query:    58 LFGCAYLGPFGHFLHLILDKIFKGKKDTSTVAKKVVLEQLTSSPWNNLMFMIYYGVVVEG 117
             ++G    GP  H+L+L ++     +   + V K+++L++L  +P   L+F     ++ EG
Sbjct:    76 VYGLFVTGPLSHYLYLFMEYWVPPEVPWARV-KRLLLDRLFFAPTFLLLFFFVMNLL-EG 133

Query:   118 RPWRDVKTKIKKDY-PTVQYTSWTFWPVVGWINHLYVPLQFRVIFHSLVAMCWGIFL 173
             +       K++  + P +Q  +W  W  + +IN  YVPLQFRV+F ++ A+ W  +L
Sbjct:   134 KNISVFVAKMRSGFWPALQM-NWRMWTPLQFININYVPLQFRVLFANMAALFWYAYL 189

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=ISO

GO:0005777 "peroxisome" evidence=IDA

GO:0005778 "peroxisomal membrane" evidence=ISO;IDA

GO:0005779 "integral to peroxisomal membrane" evidence=TAS

GO:0043234 "protein complex" evidence=ISO

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q07066	PXMP2_RAT	No assigned EC number	0.3163	0.9230	0.8659	yes	no
Q2KIY1	PXMP2_BOVIN	No assigned EC number	0.3093	0.9340	0.8673	yes	no
Q54GD8	PX24C_DICDI	No assigned EC number	0.3546	0.8956	0.8858	yes	no
P19258	MPV17_MOUSE	No assigned EC number	0.3040	0.9120	0.9431	yes	no
Q9ZS51	PMP22_ARATH	No assigned EC number	0.7206	0.9725	0.9315	no	no
P39210	MPV17_HUMAN	No assigned EC number	0.3040	0.9120	0.9431	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	182
pfam04117	68	pfam04117, Mpv17_PMP22, Mpv17 / PMP22 family	2e-18

>gnl|CDD|202894 pfam04117, Mpv17_PMP22, Mpv17 / PMP22 family

 Score = 74.9 bits (185), Expect = 2e-18
 Identities = 20/64 (31%), Positives = 38/64 (59%)

Query: 114 VVEGRPWRDVKTKIKKDYPTVQYTSWTFWPVVGWINHLYVPLQFRVIFHSLVAMCWGIFL 173
           ++EG+   ++K K+K+ +      +W  WP V +IN  +VP+ +RV+F +LV + W  +L
Sbjct: 3   LLEGKSLEEIKEKLKEKFWPTLKANWKVWPPVQFINFAFVPVHYRVLFVNLVGIGWNTYL 62

Query: 174 NLRA 177
           +   
Sbjct: 63  SYVN 66

The 22-kDa peroxisomal membrane protein (PMP22) is a major component of peroxisomal membranes. PMP22 seems to be involved in pore forming activity and may contribute to the unspecific permeability of the organelle membrane. PMP22 is synthesised on free cytosolic ribosomes and then directed to the peroxisome membrane by specific targeting information. Mpv17 is a closely related peroxisomal protein. In mouse, the Mpv17 protein is involved in the development of early-onset glomerulosclerosis. More recently a homolog of Mpv17 in S. cerevisiae has been been found to be an integral membrane protein of the inner mitochondrial membrane where it has been proposed to have a role in ethanol metabolism and tolerance during heat-shock. Defects in MPV17 is associated with mitochondrial DNA depletion syndrome (MDDS) and Navajo neurohepatopathy (NNH). MDDS is a clinically heterogeneous group of disorders characterized by a reduction in mitochondrial DNA (mtDNA) copy number. Primary mtDNA depletion is inherited as an autosomal recessive trait and may affect single organs, typically muscle or liver, or multiple tissues. Individuals with the hepatocerebral form of mitochondrial DNA depletion syndrome have early progressive liver failure and neurologic abnormalities, hypoglycemia, and increased lactate in body fluids. NNH is an autosomal recessive disease that is prevalent among Navajo children in the South Western states of America. The major clinical features are hepatopathy, peripheral neuropathy, corneal anesthesia and scarring, acral mutilation, cerebral leukoencephalopathy, failure to thrive, and recurrent metabolic acidosis with intercurrent infections. Infantile, childhood, and classic forms of NNH have been described. Mitochondrial DNA depletion was detected in the livers of patients, suggesting a primary defect in mtDNA maintenance. Length = 68

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	182
KOG1944	222	consensus Peroxisomal membrane protein MPV17 and r	100.0
PF04117	68	Mpv17_PMP22: Mpv17 / PMP22 family ; InterPro: IPR0	99.92

>KOG1944 consensus Peroxisomal membrane protein MPV17 and related proteins [General function prediction only]

Probab=100.00  E-value=8.3e-42  Score=272.70  Aligned_cols=163  Identities=36%  Similarity=0.658  Sum_probs=155.3

Q ss_pred             HhhCcHHHHHHHHHHHH-HHHHHHHHhHhcC-----CcchHHHHHHHHHHhhhhcchhHHHHHHHHHhhccCCCchHHHH
Q 030147           16 LQQHPLRTKAITAGVLS-AISDIVAQKLTGI-----QKLQLRRLLLKVLFGCAYLGPFGHFLHLILDKIFKGKKDTSTVA   89 (182)
Q Consensus        16 l~~~Pl~t~~~t~~~l~-~~gD~iaQ~~~~~-----~~~d~~R~~~~~~~G~~~~gp~~~~wy~~L~~~~~~~~~~~~~~   89 (182)
                      ...+|++++.++++.+. ..||+++|.++.+     +++|+.|++||+++|+++.||.+|+||+.||+++|. ++..+++
T Consensus        46 ~~~~~~l~~~i~~~~~~~~~~d~~~q~~~~~~~~~~~~~d~~rtlr~~~~G~~f~gp~~~~Wy~~L~~~~p~-~~~~~~~  124 (222)
T KOG1944|consen   46 FSLYPLLTKAITTSLLLAAAGDVISQSLEGRSKKLFQTLDLTRTLRMGIFGFLFVGPTLHYWYRLLSKLFPK-KTLITVV  124 (222)
T ss_pred             hhhhhHHHHHHHHHHHHHHhchhhhhhhhhhcccccccccHHHHHHHHhhhhheeccchhHHHHHHHHHccC-ccHHHHH
Confidence            35688888888888888 9999999998842     568999999999999889999999999999999998 7999999


Q ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHhcCCChhhHHHHHHhhChHHHhhccccchHHHhHHhhcccCcchhhHhHHHHHHH
Q 030147           90 KKVVLEQLTSSPWNNLMFMIYYGVVVEGRPWRDVKTKIKKDYPTVQYTSWTFWPVVGWINHLYVPLQFRVIFHSLVAMCW  169 (182)
Q Consensus        90 ~Kvl~dq~~~~P~~~~~f~~~~~~~l~g~s~~~~~~~~~~~~~~~~~~~~~~Wp~~~~inF~~vP~~~Rvl~~~~v~~~W  169 (182)
                      +|++.||++++|+.+.+|+.+++ ++||++.++..++++++++|+++++|++||++|++||++||+++|++++|+++++|
T Consensus       125 ~kvl~dql~~~P~~~~~ff~~~~-~legk~~~~~~~~~~~~~~p~l~~~~~~WP~~q~inF~~VP~~~rvl~~~~vsl~W  203 (222)
T KOG1944|consen  125 KKVLLDQLVFAPLFIVVFFLLMG-LLEGKTNEEAKAKLKRKFWPTLKANWMVWPLVQFINFRLVPLQYRVLFVNIVSLVW  203 (222)
T ss_pred             HHHHHhhhhhchHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHhhhheecchhheeeeEEccccceehhhhhHHHHH
Confidence            99999999999999999999999 99999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhcCcC
Q 030147          170 GIFLNLRALPK  180 (182)
Q Consensus       170 ~~~LS~~~~~~  180 (182)
                      |+|||++++++
T Consensus       204 ~~~Ls~~~~~~  214 (222)
T KOG1944|consen  204 NTYLSYKNASL  214 (222)
T ss_pred             HHHHHHHhhcc
Confidence            99999999887

>PF04117 Mpv17_PMP22: Mpv17 / PMP22 family ; InterPro: IPR007248 The 22 kDa peroxisomal membrane protein (PMP22) is a major component of peroxisomal membranes

Probab=99.92  E-value=4.9e-26  Score=150.12  Aligned_cols=68  Identities=37%  Similarity=0.859  Sum_probs=65.9

Q ss_pred             HHHHhcCCChhhHHHHHHhhChHHHhhccccchHHHhHHhhcccCcchhhHhHHHHHHHHHHHHhhcCc
Q 030147          111 YGVVVEGRPWRDVKTKIKKDYPTVQYTSWTFWPVVGWINHLYVPLQFRVIFHSLVAMCWGIFLNLRALP  179 (182)
Q Consensus       111 ~~~~l~g~s~~~~~~~~~~~~~~~~~~~~~~Wp~~~~inF~~vP~~~Rvl~~~~v~~~W~~~LS~~~~~  179 (182)
                      |+ ++||+|++++.+++|++++++++++|++|||+|++||.+||+++|++++|+++++||+|||+++|+
T Consensus         1 Mg-~l~g~s~~~~~~~l~~~~~~~~~~~~~~Wp~~~~vnF~~vP~~~Rv~~~~~v~~~W~~~LS~~~~r   68 (68)
T PF04117_consen    1 MG-LLEGKSWEEIKEKLKRDYWPTLKASWKFWPPAQIVNFRYVPPHYRVLFVNVVSFFWNTYLSYIANR   68 (68)
T ss_pred             CC-cccCCCHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHhcccChhhhhhhhhhHHHHHHHHHHHHhcC
Confidence            46 899999999999999999999999999999999999999999999999999999999999999885

PMP22 seems to be involved in pore-forming activity and may contribute to the unspecific permeability of the organelle membrane. PMP22 is synthesised on free cytosolic ribosomes and then directed to the peroxisome membrane by specific targeting information []. Mpv17 is a closely related peroxisomal protein involved in the development of early-onset glomerulosclerosis []. A member of this family found in Saccharomyces cerevisiae (Baker's yeast) is an integral membrane protein of the inner mitochondrial membrane and has been suggested to play a role in mitochondrial function during heat shock [].; GO: 0016021 integral to membrane

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00