Citrus Sinensis ID: 030194

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-
Protein Sequence
MPDFDGKELSLELRGNGRLGSFEDSSGKAYDIVSNDFQEPDEMVFLNYPSEPKIVGKISRRVSLVHYPEPKEVEELNPDKIRQLHVTSSGASMPNHRFASSGQSSWRRNSQSTLEHSSYTQSSRYKSFSPEGGEPSKHSKRRRAHEPNHSTDHSLGRHSEVTSLGSSERSHQEKLKRKGKS
Secondary Structure (PSIPRED)
cccccccEEEEEEcccccccccccccccEEEEEEccccccccEEEEEcccccccccEEEEEEEEEEccccHHHHHcccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccccccEEEEEEccccccccEccccccEEEEEEEcccccccEEEEccccccccccEEEEEEEEEEcccHHHHHcccccHcHHccccccccccccccEcccccccccccccccccccccccccHcHHcccccccccccccccccccccccccccccccccEEEcccccccccccccccccc
Coil and Loop (DISEMBL)
mpdfdgkelslelrgngrlgsfedssgkaydivsndfqepdemvflnypsepkivgkisrrvslvhypepkeveelnpdkirqlhvtssgasmpnhrfassgqsswrrnsqstlehssytqssryksfspeggepskhskrrrahepnhstdhslgrhsevtslgssershQEKLKRKGKS
Flexible Loop (DISEMBL)
MPDFDGKELSLELrgngrlgsfedssgKAYDIVSNDFQEPDEMVFLNYPSEPKIVGKISRRVSLVHypepkeveelnpdkIRQLHVtssgasmpnhrfassgqsswRRNSQStlehssytqssryksfspeggepskhskrrrahepnhstdhslgrhsevtslgssershqeklkrkgks
Low Complexity Region (SEG)
MPDFDGKELSLELRGNGRLGSFEDSSGKAYDIVSNDFQEPDEMVFLNYPSEPKIVGKISRRVSLVHYPEPKEVEELNPDKIRQLHVTSSGASMPNHRFASSGQSSWRRNSQSTLEHSSYTQSSRYKSFSPEGGEPSKHSKRRRAHEPNHSTDHSLGRHSEVTSLGSSERSHQEKLKRKGKS
Disordered region (IsUnstruct)
*******************************IV********EMVFLNYPSEPKIVGKISRRVSLVHY******************************************************************************************************************
Disordered Region (DISOPRED)
******KELSLELRGNGRLGSFEDSSGKAYDIVSNDFQEPDEMVFL***S*****GKISRRVSLVHYPE****************************************************************************************************************
Disordered Region (DISEMBL)
MPDFDGKELSLELRGNGRLGSFEDSSGKAYDIVSNDFQEPDEMVFLNYPSEPKIVGKISRRVSLVHYPEPKEVEELNPDKIRQLHVTSSGASMPN**************************************************************************************
Disordered Region (DISPRO)
*PDFDGKELSLELRGNGRLGSFEDSSGKAYDIVSNDFQEPDEMVFLNYPSEPKIVGKISRRVSLVHYPEPKEVEE**********************************************************************************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MPDFDGKELSLELRGNGRLGSFEDSSGKAYDIVSNDFQEPDEMVFLNYPSEPKIVGKISRRVSLVHYPEPKEVEELNPDKIRQLHVTSSGASMPNHRFASSGQSSWRRNSQSTLEHSSYTQSSRYKSFSPEGGEPSKHSKRRRAHEPNHSTDHSLGRHSEVTSLGSSERSHQEKLKRKGKS
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	181	2.2.26 [Sep-21-2011]
F4KF27	211	Mediator-associated prote	yes	no	0.712	0.611	0.357	6e-07

>sp|F4KF27|MDA2_ARATH Mediator-associated protein 2 OS=Arabidopsis thaliana GN=At5g64680 PE=1 SV=1

 Score = 53.9 bits (128), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 54/151 (35%), Positives = 72/151 (47%), Gaps = 22/151 (14%)

Query: 1   MPDFDGKELSLELRGNGRLGSFEDSS--------GKAYDIVSNDFQEPDEMVFLNYPSE- 51
            P+ +   L +E   +G  G F+DS+        G  YD+ S  F   D    L  PSE 
Sbjct: 40  FPEIEENTLKIEPDKDGLFGEFKDSNAGSLHLCLGAKYDLAS--FHSQDAGAELIIPSEE 97

Query: 52  PKIVGKISRRVSLVHYPEPKEVEELNPDKIRQLHVTSSGASMPNHRFASSGQSSWRRNSQ 111
             IVGKI+RRV+LV YPEP E+ +    + +Q  V     S+ N    SS +SS   N  
Sbjct: 98  SMIVGKITRRVALVRYPEPNELLQKMKARTQQKLV----GSVTN----SSKKSS---NLT 146

Query: 112 STLEHSSYTQSSRYKSFSPEGGEPSKHSKRR 142
            +  H S T+SSR KS      E  K  KR+
Sbjct: 147 QSSRHKSGTRSSREKSMFSGFTETPKSPKRK 177

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	181
225425286	218	PREDICTED: uncharacterized protein LOC10	0.911	0.756	0.464	2e-29
147864421	340	hypothetical protein VITISV_024902 [Viti	0.900	0.479	0.459	3e-28
118485606	231	unknown [Populus trichocarpa]	0.955	0.748	0.497	1e-27
224057854	231	predicted protein [Populus trichocarpa]	0.955	0.748	0.491	3e-27
255543236	208	conserved hypothetical protein [Ricinus	0.834	0.725	0.483	7e-26
449456619	246	PREDICTED: mediator-associated protein 2	0.955	0.703	0.418	3e-25
356521396	216	PREDICTED: uncharacterized protein LOC10	0.911	0.763	0.430	7e-21
255648339	216	unknown [Glycine max]	0.917	0.768	0.415	9e-20
356548678	216	PREDICTED: uncharacterized protein LOC10	0.917	0.768	0.415	1e-19
357513323	216	hypothetical protein MTR_8g012410 [Medic	0.756	0.634	0.392	2e-18

>gi|225425286|ref|XP_002272015.1| PREDICTED: uncharacterized protein LOC100264392 isoform 1 [Vitis vinifera] gi|225425288|ref|XP_002272062.1| PREDICTED: uncharacterized protein LOC100264392 isoform 2 [Vitis vinifera] gi|296085538|emb|CBI29270.3| unnamed protein product [Vitis vinifera]

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 86/185 (46%), Positives = 113/185 (61%), Gaps = 20/185 (10%)

Query: 2   PDFDGKELSLELRGNGRLGSFEDSSGKAYDIVSNDFQEPDEMVFLNYPSEPKIVGKISRR 61
           PDFDG+ELSL+L  +G+LG FE SSGK Y++VS   Q+PD  VF++ PSE KIVGKISRR
Sbjct: 45  PDFDGQELSLKLHQDGQLGKFEGSSGKLYNVVSFASQDPDATVFISSPSESKIVGKISRR 104

Query: 62  VSLVHYPEPKEVEELNPDKIRQLHVTSSGASMP--NHRFASSGQSSWRRNSQSTLEHSSY 119
           VSLVHYPEP E+E  + + +R+++  S G+S+   +H +++   S+  RN QS    S+ 
Sbjct: 105 VSLVHYPEPDELENQSANNLRKMYQRSGGSSLTHSSHHYSTPSHSTKLRNPQSVSGRSAS 164

Query: 120 TQSSRYKSFSPEGGEPSKHSKRRRAHEP----NHSTDHSLGRHSEVTSLGSSERSHQEKL 175
           T SSR+              KRR A +P    N  T  S   HS VTS GS   SHQ K 
Sbjct: 165 THSSRH--------------KRRHADKPATSINQLTQDSGRGHSTVTSSGSLGLSHQGKS 210

Query: 176 KRKGK 180
            +K K
Sbjct: 211 TKKVK 215

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147864421|emb|CAN82642.1| hypothetical protein VITISV_024902 [Vitis vinifera]

 Score =  129 bits (325), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 84/183 (45%), Positives = 111/183 (60%), Gaps = 20/183 (10%)

Query: 2   PDFDGKELSLELRGNGRLGSFEDSSGKAYDIVSNDFQEPDEMVFLNYPSEPKIVGKISRR 61
           PDFDG+ELSL+L  +G+LG FE SSGK Y++VS   Q+PD  VF++ PSE KIVGKISR 
Sbjct: 112 PDFDGQELSLKLHQDGQLGKFEGSSGKLYNVVSFAXQDPDATVFISSPSESKIVGKISRC 171

Query: 62  VSLVHYPEPKEVEELNPDKIRQLHVTSSGASMP--NHRFASSGQSSWRRNSQSTLEHSSY 119
           VSLVHYPEP E+E  + + +R+++  S G+S+   +H +++   S+  RN QS    S+ 
Sbjct: 172 VSLVHYPEPDELENQSANNLRKMYQRSGGSSLTHSSHHYSTPSHSTKLRNPQSVSGRSAS 231

Query: 120 TQSSRYKSFSPEGGEPSKHSKRRRAHEP----NHSTDHSLGRHSEVTSLGSSERSHQEKL 175
           T SSR+              KRR A +P    N  T  S   HS VTS GS   SHQ K 
Sbjct: 232 THSSRH--------------KRRHADKPATSINQLTQDSGRGHSTVTSSGSLGLSHQGKS 277

Query: 176 KRK 178
            +K
Sbjct: 278 TKK 280

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118485606|gb|ABK94653.1| unknown [Populus trichocarpa]

 Score =  128 bits (322), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 90/181 (49%), Positives = 116/181 (64%), Gaps = 8/181 (4%)

Query: 1   MPDFDGKELSLELRGNGRLGSFEDSSGKAYDIVSNDFQEPDEMVFLNYPSEPKIVGKISR 60
           +PDF+GKELSL L  +G LGSFE S GKA+D+VS   Q  D  VFL+   E KIVGKISR
Sbjct: 45  LPDFNGKELSLSLDQDGCLGSFEASPGKAFDLVSCSAQGLDATVFLSSELETKIVGKISR 104

Query: 61  RVSLVHYPEPKEVEELNPD-KIRQLHVTSSGASMPNHRF--ASSGQSSWRRNSQSTLEHS 117
           +VSLVHYP+PKE+E+   + K ++ +  S+G+S+ N      ++  SS  RNSQ +  H+
Sbjct: 105 QVSLVHYPDPKELEKQEAEKKSKRSYQMSAGSSLMNSSLHSGTTTPSSKLRNSQLSRGHA 164

Query: 118 SYTQSSRYKSFSPEGGEPSKHSKRRRAHEPNHSTDHSL---GR-HSEVTSLGSSERSHQE 173
           + T SSR+KS   E GE S +SK+RR H  + STD S    GR HS     GSS  SHQ 
Sbjct: 165 ASTHSSRHKSSLSEAGEQS-NSKQRRMHNRSGSTDRSTLDSGRGHSGHAYSGSSGLSHQG 223

Query: 174 K 174
           K
Sbjct: 224 K 224

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224057854|ref|XP_002299357.1| predicted protein [Populus trichocarpa] gi|222846615|gb|EEE84162.1| predicted protein [Populus trichocarpa]

 Score =  126 bits (317), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 89/181 (49%), Positives = 116/181 (64%), Gaps = 8/181 (4%)

Query: 1   MPDFDGKELSLELRGNGRLGSFEDSSGKAYDIVSNDFQEPDEMVFLNYPSEPKIVGKISR 60
           +PDF+GKELSL L  +G LGSFE S GK++D+VS   Q  D  VFL+   E KIVGKISR
Sbjct: 45  LPDFNGKELSLSLDQDGCLGSFEASPGKSFDLVSCSAQGLDATVFLSSELETKIVGKISR 104

Query: 61  RVSLVHYPEPKEVEELNPD-KIRQLHVTSSGASMPNHRF--ASSGQSSWRRNSQSTLEHS 117
           +VSLVHYP+PKE+E+   + K ++ +  S+G+S+ N      ++  SS  RNSQ +  H+
Sbjct: 105 QVSLVHYPDPKELEKQEAEKKSKRSYQMSAGSSLMNSSLHSGTTTPSSKLRNSQLSRGHA 164

Query: 118 SYTQSSRYKSFSPEGGEPSKHSKRRRAHEPNHSTDHSL---GR-HSEVTSLGSSERSHQE 173
           + T SSR+KS   E GE S +SK+RR H  + STD S    GR HS     GSS  SHQ 
Sbjct: 165 ASTHSSRHKSSLSEAGEQS-NSKQRRMHNRSGSTDRSTLDSGRGHSGHAYSGSSGLSHQG 223

Query: 174 K 174
           K
Sbjct: 224 K 224

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255543236|ref|XP_002512681.1| conserved hypothetical protein [Ricinus communis] gi|223548642|gb|EEF50133.1| conserved hypothetical protein [Ricinus communis]

 Score =  122 bits (306), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 75/155 (48%), Positives = 104/155 (67%), Gaps = 4/155 (2%)

Query: 1   MPDFDGKELSLELRGNGRLGSFEDSSGKAYDIVSNDFQEPDEMVFLNYPSEPKIVGKISR 60
           +PDF+GKE+SL L  +G L +FE SSGK YD+VS+  QEPD  VFL+  S+ KIVG +SR
Sbjct: 40  LPDFNGKEISLNLYTDGCLATFEGSSGKVYDVVSSAAQEPDATVFLSSASQTKIVGNVSR 99

Query: 61  RVSLVHYPEPKEVEELNPD-KIRQLHVTSSGASMPNHRFASSGQSSWRRNSQSTLEHSSY 119
           RVSLVH+P+PKE+E+   + K ++++  S+G+S   +  A+  QS+  RNS S   H++ 
Sbjct: 100 RVSLVHFPDPKELEKQEAEKKSKRMYQMSAGSS---YHSATPTQSTKLRNSYSLRGHAAS 156

Query: 120 TQSSRYKSFSPEGGEPSKHSKRRRAHEPNHSTDHS 154
           T SSR++S   E GE S   KRR  +E   STD S
Sbjct: 157 THSSRHRSSLSEAGEQSSAKKRRHKYERTASTDRS 191

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449456619|ref|XP_004146046.1| PREDICTED: mediator-associated protein 2-like isoform 1 [Cucumis sativus] gi|449456621|ref|XP_004146047.1| PREDICTED: mediator-associated protein 2-like isoform 2 [Cucumis sativus] gi|449507088|ref|XP_004162930.1| PREDICTED: mediator-associated protein 2-like isoform 1 [Cucumis sativus] gi|449507092|ref|XP_004162931.1| PREDICTED: mediator-associated protein 2-like isoform 2 [Cucumis sativus]

 Score =  120 bits (300), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 85/203 (41%), Positives = 121/203 (59%), Gaps = 30/203 (14%)

Query: 2   PDFDGKELSLELRGNGRLGSFEDSSGKAYDIVSNDFQEPDEMVFLNYPSEPKIVGKISRR 61
           PDFDG+E SL+L  +G +GSF+ SSGK+YD++S   QEP+  VFL   S+ ++VGKISRR
Sbjct: 50  PDFDGQEFSLQLHPDGHMGSFQGSSGKSYDVISCVAQEPEASVFLPSSSDTRLVGKISRR 109

Query: 62  VSLVHYPEPKEVEELNPDKIRQLHVTSSGASMPNHRFASSGQSSWRRNSQSTLEHSSYTQ 121
           +SLVHYPEP+E+E+     ++ L+  SSG S+ N R     Q++  R   S+   ++ ++
Sbjct: 110 ISLVHYPEPEELEKATI-PLKSLYQKSSGISLTNSR-----QTTTSRGPHSSSRRTTSSR 163

Query: 122 SSRYKSFSPEGGEPSK--------------------HSKRRRAHEPNHSTDHSLGR---- 157
           SS+ +S   E  EPSK                     SKR+R HEP+ S DHS       
Sbjct: 164 SSKPRSSVSEFTEPSKTSSVKQELESTESRDHKRKDSSKRKRLHEPSRSIDHSTRDSGHG 223

Query: 158 HSEVTSLGSSERSHQEKLKRKGK 180
           +S VTS GS+ERS + K K++ K
Sbjct: 224 NSAVTSSGSAERSSEGKSKKQKK 246

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356521396|ref|XP_003529342.1| PREDICTED: uncharacterized protein LOC100790461 [Glycine max]

 Score =  105 bits (262), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 77/179 (43%), Positives = 98/179 (54%), Gaps = 14/179 (7%)

Query: 1   MPDFDGKELSLELRGNGRLGSFEDSSGKAYDIVSNDFQEPDEMVFLNYPS-EPKIVGKIS 59
           + D  G++L L L  +G+L SFEDSSGK YD VS   QEPDE VF+  PS EPKI GKIS
Sbjct: 47  LSDIHGQKLFLTLHNDGKLASFEDSSGKVYDFVSYSAQEPDETVFV--PSTEPKI-GKIS 103

Query: 60  RRVSLVHYPEPKEVEELNPDKIRQLHVTSSGASMPNHRFASSGQSSWRRNSQSTLEHSSY 119
            RVS VHYP PKE+E+LN    +  H  SSG +          QS    +S+ + + SS 
Sbjct: 104 MRVSTVHYPGPKELEKLNSTNAKHAHGNSSGVTGTTSSRYFPMQSGGAASSKGSRQRSSL 163

Query: 120 TQSSRYKSFSPEGGEPSKHSKRRRAHEPNHSTDHSLGRHSEVTSLGSSERSHQEKLKRK 178
           T++S          EPS  SKRR A +   +   +   HS   S  S   SH+ K KR+
Sbjct: 164 TEAS----------EPSSISKRRHASKSKSNLSETSHEHSTGISSMSPNHSHEGKAKRR 212

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255648339|gb|ACU24621.1| unknown [Glycine max]

 Score =  102 bits (253), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 74/178 (41%), Positives = 100/178 (56%), Gaps = 12/178 (6%)

Query: 1   MPDFDGKELSLELRGNGRLGSFEDSSGKAYDIVSNDFQEPDEMVFLNYPSEPKIVGKISR 60
           + D  G++L L L  +G+L SF+DSSGK YD VS   QEPDE VF++  +EPKI GKISR
Sbjct: 47  LSDIHGQKLFLTLHNDGKLASFKDSSGKVYDFVSYSAQEPDETVFVS-STEPKI-GKISR 104

Query: 61  RVSLVHYPEPKEVEELNPDKIRQLHVTSSGASMPNHRFASSGQSSWRRNSQSTLEHSSYT 120
           RVS VHY +PKE+E LN    +  H  SSG          +G +S R    +    ++ +
Sbjct: 105 RVSTVHYSDPKELENLNSTNAKHAHGNSSGV---------TGTTSSRY-FPTQSSGAASS 154

Query: 121 QSSRYKSFSPEGGEPSKHSKRRRAHEPNHSTDHSLGRHSEVTSLGSSERSHQEKLKRK 178
           + SR +S   E  EPS  SKRR A +   +   +   HS   S  S + SH+ K KR+
Sbjct: 155 KGSRQRSSLTEASEPSSISKRRHASKSKSNLSEASHGHSTGISSMSPDHSHEGKAKRR 212

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356548678|ref|XP_003542727.1| PREDICTED: uncharacterized protein LOC100814011 [Glycine max]

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 74/178 (41%), Positives = 100/178 (56%), Gaps = 12/178 (6%)

Query: 1   MPDFDGKELSLELRGNGRLGSFEDSSGKAYDIVSNDFQEPDEMVFLNYPSEPKIVGKISR 60
           + D  G++L L L  +G+L SF+DSSGK YD VS   QEPDE VF++  +EPKI GKISR
Sbjct: 47  LSDIHGQKLFLTLHNDGKLASFKDSSGKVYDFVSYSAQEPDETVFVS-STEPKI-GKISR 104

Query: 61  RVSLVHYPEPKEVEELNPDKIRQLHVTSSGASMPNHRFASSGQSSWRRNSQSTLEHSSYT 120
           RVS VHY +PKE+E LN    +  H  SSG          +G +S R     +   ++ +
Sbjct: 105 RVSTVHYSDPKELENLNSTNAKHAHGNSSGV---------TGTTSSRYFPMQS-SGAASS 154

Query: 121 QSSRYKSFSPEGGEPSKHSKRRRAHEPNHSTDHSLGRHSEVTSLGSSERSHQEKLKRK 178
           + SR +S   E  EPS  SKRR A +   +   +   HS   S  S + SH+ K KR+
Sbjct: 155 KGSRQRSSLTEASEPSSISKRRHASKSKSNLSEASHGHSTGISSMSPDHSHEGKAKRR 212

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357513323|ref|XP_003626950.1| hypothetical protein MTR_8g012410 [Medicago truncatula] gi|355520972|gb|AET01426.1| hypothetical protein MTR_8g012410 [Medicago truncatula] gi|388512825|gb|AFK44474.1| unknown [Medicago truncatula]

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 64/163 (39%), Positives = 91/163 (55%), Gaps = 26/163 (15%)

Query: 1   MPDFDGKELSLELRGNGRLGSFEDSSGKAYDIVSNDFQEPDEMVFLNYPSEPKIVGKISR 60
           + D +GKELS +L   G L SFE  SG+ YD +S    EPDE VF++  +E +I GKISR
Sbjct: 52  LDDINGKELSFKLNKEGTLASFEGVSGETYDFLSFASTEPDETVFVSSATESEIAGKISR 111

Query: 61  RVSLVHYPEPKEVEEL---NPDKIRQLHVTSSGASMPNHRFASSGQSSWRRNSQSTLEHS 117
           RVS+VHYP+P+ +E++   +P++  Q            +  A++ QS+ RR+      H+
Sbjct: 112 RVSVVHYPDPRALEKISSTDPNQTLQ------------NSIAAASQSAQRRS------HA 153

Query: 118 SYTQSSRYKS----FSPEGGEPSKHSKRRRAHEPNHSTDHSLG 156
           S T+SSR KS     S     P +H   RR  +P  S  HS G
Sbjct: 154 SATKSSRAKSSISGLSERTTTPKRHGVNRRP-QPESSRGHSSG 195

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	181
TAIR|locus:2174834	211	AT5G64680 "AT5G64680" [Arabido	0.878	0.753	0.365	3.4e-13

TAIR|locus:2174834 AT5G64680 "AT5G64680" [Arabidopsis thaliana (taxid:3702)]

 Score = 173 (66.0 bits), Expect = 3.4e-13, P = 3.4e-13
 Identities = 68/186 (36%), Positives = 89/186 (47%)

Query:     2 PDFDGKELSLELRGNGRLGSFEDSS--------GKAYDIVSNDFQEPDEMVFLNYPSEPK 53
             P+ +   L +E   +G  G F+DS+        G  YD+ S  F   D    L  PSE  
Sbjct:    41 PEIEENTLKIEPDKDGLFGEFKDSNAGSLHLCLGAKYDLAS--FHSQDAGAELIIPSEES 98

Query:    54 -IVGKISRRVSLVHYPEPKEVEELNPDKIRQLHVTSSGASMPNHRFASSGQSSWRRNSQS 112
              IVGKI+RRV+LV YPEP E+ +    + +Q  V     S+ N    SS +SS   N   
Sbjct:    99 MIVGKITRRVALVRYPEPNELLQKMKARTQQKLV----GSVTN----SSKKSS---NLTQ 147

Query:   113 TLEHSSYTQSSRYKSFSPEGGEPSKHSKRRRAHEPNHSTDHSLGRHSEVTSLGSSERSHQ 172
             +  H S T+SSR KS      E  K  KR+ +   + S  H   R S  T  GSSERS +
Sbjct:   148 SSRHKSGTRSSREKSMFSGFTETPKSPKRKNSE--SSSGKH---RSSTSTVSGSSERSAK 202

Query:   173 EKLKRK 178
              K K K
Sbjct:   203 SKKKVK 208


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.307   0.125   0.354    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      181       181   0.00095  109 3  11 23  0.41    33
                                                     31  0.40    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  579 (62 KB)
  Total size of DFA:  156 KB (2093 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  22.37u 0.10s 22.47t   Elapsed:  00:00:02
  Total cpu time:  22.37u 0.10s 22.47t   Elapsed:  00:00:02
  Start:  Mon May 20 16:02:00 2013   End:  Mon May 20 16:02:02 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005730 "nucleolus" evidence=IDA

GO:0000398 "mRNA splicing, via spliceosome" evidence=RCA

GO:0000741 "karyogamy" evidence=RCA

GO:0001510 "RNA methylation" evidence=RCA

GO:0006312 "mitotic recombination" evidence=RCA

GO:0006626 "protein targeting to mitochondrion" evidence=RCA

GO:0009560 "embryo sac egg cell differentiation" evidence=RCA

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0010388 "cullin deneddylation" evidence=RCA

GO:0051604 "protein maturation" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00006212001 SubName- Full=Chromosome chr1 scaffold_166, whole genome shotgun sequence; (218 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

No hit with probability above 80.00

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00