Citrus Sinensis ID: 030202

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-
Protein Sequence
MADNDDHHGKQEQPKWQGRACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLAINAEEMTLTYSIVDGNVGFYGYVSTLTVAPKENGCYIEWKYEVEPVKGWRLEDLDCFISSGLQVMARRMKEALQAYEVIMHYSSSS
Secondary Structure (PSIPRED)
cccccccccccccccEEEEEEEEEEcccHHHHHHHHHcccccccccccccEEEEEccccccccEEEEEEccccccccccccccccccEEEEEEEEEcccccEEEEEEEEccccccccEEEEEEEEcccccEEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccEEEEEEccccHHHHHHHHHcccccccHccccccEEEcccccccccEEEEEEccccccccccEcccccccHHHHHHHHccccccEEEEEEEccccccccEEEEEEEEEcccccEEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
madnddhhgkqeqpkwqgracEELTGVKAEQIWAFLEDffgldkwfptlttcipiqgisgqpgcvrfcagfktpvdnkdddheqsvNWTKQKLLAINAEEMTLTYSIVDGNVGFYGYVSTltvapkengcyiewkyevepvkgwrledldcFISSGLQVMARRMKEALQAYEVIMHYSSSS
Flexible Loop (DISEMBL)
madnddhhgkqeqpkwqgrACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAGFKTPvdnkdddheqsvNWTKQKLLAINAEEMTLTYSIVDGNVGFYGYVSTLTVAPKENGCYIEWKYEVEPVKGWRLEDLDCFISSGLQVMARRMKEALQAYEVIMHYSSSS
Low Complexity Region (SEG)
MADNDDHHGKQEQPKWQGRACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLAINAEEMTLTYSIVDGNVGFYGYVSTLTVAPKENGCYIEWKYEVEPVKGWRLEDLDCFISSGLQVMARRMKEALQAYEVIMHYSSSS
Disordered region (IsUnstruct)
******************RACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAGFKTPVD********SVNWTKQKLLAINAEEMTLTYSIVDGNVGFYGYVSTLTVAPKENGCYIEWKYEVEPVKGWRLEDLDCFISSGLQVMARRMKEALQAYEVIMH*****
Disordered Region (DISOPRED)
*********************EELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLAINAEEMTLTYSIVDGNVGFYGYVSTLTVAPKENGCYIEWKYEVEPVKGWRLEDLDCFISSGLQVMARRMKEALQAYE**M******
Disordered Region (DISEMBL)
*****************GRACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLAINAEEMTLTYSIVDGNVGFYGYVSTLTVAPKENGCYIEWKYEVEPVKGWRLEDLDCFISSGLQVMARRMKEALQAYEVIMHYSSSS
Disordered Region (DISPRO)
**************KWQGRACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLAINAEEMTLTYSIVDGNVGFYGYVSTLTVAPKENGCYIEWKYEVEPVKGWRLEDLDCFISSGLQVMARRMKEALQAYEVIMHY****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MADNDDHHGKQEQPKWQGRACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLAINAEEMTLTYSIVDGNVGFYGYVSTLTVAPKENGCYIEWKYEVEPVKGWRLEDLDCFISSGLQVMARRMKEALQAYEVIMHYSSSS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	181	2.2.26 [Sep-21-2011]
P59082	169	Lachrymatory-factor synth	N/A	no	0.668	0.715	0.282	7e-14

>sp|P59082|LFS_ALLCE Lachrymatory-factor synthase OS=Allium cepa GN=LFS PE=1 SV=1

 Score = 76.6 bits (187), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 37/131 (28%), Positives = 67/131 (51%), Gaps = 10/131 (7%)

Query: 15  KWQGRACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAGFKTP 74
           KW G+    L   K EQ W  L+DF  L K  P+L+ C  ++G +   GCVR+  G   P
Sbjct: 20  KWSGKVHALLPNTKPEQAWTLLKDFINLHKVMPSLSVCELVEGEANVVGCVRYVKGIMHP 79

Query: 75  VDNKDDDHEQSVNWTKQKLLAINAEEMTLTYSIVDGNVGFYGYVSTLTV--APKENGCYI 132
           ++ +         W K+KL+A++ + M+ +Y   +   G+  Y +T+ +   P+  G   
Sbjct: 80  IEEE--------FWAKEKLVALDNKNMSYSYIFTECFTGYEDYTATMQIVEGPEHKGSRF 131

Query: 133 EWKYEVEPVKG 143
           +W ++ + ++G
Sbjct: 132 DWSFQCKYIEG 142

Produces lacrymatory factor (propanthial S-oxide) from 1-propenylsulphenic acid, an unstable compound resulting from the degradation of trans-1-propenyl-L-cysteine sulphoxide (PRENCSO) by alliinase.
Allium cepa (taxid: 4679)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	181
356495923	173	PREDICTED: lachrymatory-factor synthase-	0.900	0.942	0.652	5e-60
225445116	188	PREDICTED: uncharacterized protein LOC10	0.939	0.904	0.614	2e-59
388492852	169	unknown [Medicago truncatula]	0.883	0.946	0.656	6e-59
255546357	155	Lachrymatory-factor synthase precursor,	0.812	0.948	0.682	7e-57
388521915	169	unknown [Medicago truncatula]	0.883	0.946	0.638	1e-55
388520475	169	unknown [Medicago truncatula]	0.883	0.946	0.625	1e-54
224141719	175	predicted protein [Populus trichocarpa]	0.883	0.914	0.448	2e-37
147865770	163	hypothetical protein VITISV_034795 [Viti	0.872	0.969	0.444	1e-36
225429349	168	PREDICTED: uncharacterized protein LOC10	0.878	0.946	0.455	7e-36
255550946	343	hypothetical protein RCOM_0800710 [Ricin	0.889	0.469	0.439	3e-35

>gi|356495923|ref|XP_003516820.1| PREDICTED: lachrymatory-factor synthase-like [Glycine max]

 Score =  235 bits (600), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 109/167 (65%), Positives = 132/167 (79%), Gaps = 4/167 (2%)

Query: 6   DHHGKQEQPKWQGRACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCV 65
           +   + E+ KW+G+A  E+ G KAEQ+W  LEDFFGLDKWFPTL+TCIP++GISGQPGCV
Sbjct: 5   EQGSQPEKEKWKGKATTEVKGAKAEQVWPLLEDFFGLDKWFPTLSTCIPVEGISGQPGCV 64

Query: 66  RFCAGFKTPVDNKDDDHEQSVNWTKQKLLAINAEEMTLTYSIVDGNVGFYGYVSTLTVAP 125
           RFCAGFKTPVD    D +Q+VNWTKQKLL+I+  +   +YSIVDGNVGF+ YVSTL V P
Sbjct: 65  RFCAGFKTPVD----DGKQTVNWTKQKLLSIDPTQRVFSYSIVDGNVGFHSYVSTLKVLP 120

Query: 126 KENGCYIEWKYEVEPVKGWRLEDLDCFISSGLQVMARRMKEALQAYE 172
              GC IEW YEVEPV+GW+LE LD FI +GLQVMA+RM+ AL+  E
Sbjct: 121 MAEGCEIEWLYEVEPVEGWKLEHLDSFIDTGLQVMAQRMQAALKTME 167

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225445116|ref|XP_002283822.1| PREDICTED: uncharacterized protein LOC100261221 [Vitis vinifera]

 Score =  233 bits (595), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 107/174 (61%), Positives = 134/174 (77%), Gaps = 4/174 (2%)

Query: 1   MADNDDHHGKQEQPKWQGRACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISG 60
           M    D    + QPKW+G+AC E+ G KAEQ+W  LEDFFGL+KWFPTLTTC+P++G+SG
Sbjct: 1   MESAADQISDKHQPKWEGKACAEVAGCKAEQVWPLLEDFFGLNKWFPTLTTCLPVEGVSG 60

Query: 61  QPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLAINAEEMTLTYSIVDGNVGFYGYVST 120
           QPGC R+CAGFKT  ++ D      +NWTKQKLL+I+ +E+T +YSI+DGNVGF  YVST
Sbjct: 61  QPGCTRYCAGFKTHANSGD----VIMNWTKQKLLSIDPDELTFSYSIIDGNVGFNSYVST 116

Query: 121 LTVAPKENGCYIEWKYEVEPVKGWRLEDLDCFISSGLQVMARRMKEALQAYEVI 174
           + V P E GC IEW+YEVEPV+GW L DLD FI SGLQVMA+RM+ AL+A  V+
Sbjct: 117 VKVLPTEEGCSIEWRYEVEPVEGWTLGDLDSFIGSGLQVMAKRMEAALKADVVL 170

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388492852|gb|AFK34492.1| unknown [Medicago truncatula]

 Score =  232 bits (591), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 107/163 (65%), Positives = 133/163 (81%), Gaps = 3/163 (1%)

Query: 10  KQEQPKWQGRACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCA 69
           +Q + KW+G+A  E+ G KAEQ+W  LEDFFGLDKWFPTL+TCIPI+GISG+PGCVRFCA
Sbjct: 5   QQTKEKWKGKAKTEVVGCKAEQVWPLLEDFFGLDKWFPTLSTCIPIEGISGKPGCVRFCA 64

Query: 70  GFKTPVDNKDDDHEQSVNWTKQKLLAINAEEMTLTYSIVDGNVGFYGYVSTLTVAPKENG 129
           GFKTPVD   +D +QS+NWTKQKLL+IN  +   TY+I+DGNVGFY YVST+ V PK++G
Sbjct: 65  GFKTPVD---EDGKQSLNWTKQKLLSINPIQRVFTYAIIDGNVGFYSYVSTVKVLPKDDG 121

Query: 130 CYIEWKYEVEPVKGWRLEDLDCFISSGLQVMARRMKEALQAYE 172
           C IEW YEVEPV+GW+LE LD FI +GL VM +R++EA +  E
Sbjct: 122 CEIEWLYEVEPVEGWKLEYLDFFIGNGLDVMGKRIQEAFKTME 164

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255546357|ref|XP_002514238.1| Lachrymatory-factor synthase precursor, putative [Ricinus communis] gi|223546694|gb|EEF48192.1| Lachrymatory-factor synthase precursor, putative [Ricinus communis]

 Score =  225 bits (573), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 101/148 (68%), Positives = 124/148 (83%), Gaps = 1/148 (0%)

Query: 11  QEQPKWQGRACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAG 70
           Q+QPKW+G+A  +L   K EQ+W FLEDFFGL+KWFPTLTTC+P++GISGQPGCVR+CAG
Sbjct: 4   QDQPKWEGKASAKLKVTKPEQVWPFLEDFFGLNKWFPTLTTCVPVEGISGQPGCVRYCAG 63

Query: 71  FKTPVDNKDDDHEQSV-NWTKQKLLAINAEEMTLTYSIVDGNVGFYGYVSTLTVAPKENG 129
           F+TPVDN +   +Q V NWTKQKLL+I+++EM  +YSI+DGNVGF  YVST+ V P E+G
Sbjct: 64  FRTPVDNTNRRADQEVSNWTKQKLLSIDSKEMVFSYSIIDGNVGFNAYVSTVKVVPNEDG 123

Query: 130 CYIEWKYEVEPVKGWRLEDLDCFISSGL 157
           C IEW+YEVEPVK W+LEDLD FISS L
Sbjct: 124 CEIEWRYEVEPVKDWKLEDLDFFISSVL 151

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388521915|gb|AFK49019.1| unknown [Medicago truncatula]

 Score =  221 bits (562), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 104/163 (63%), Positives = 128/163 (78%), Gaps = 3/163 (1%)

Query: 10  KQEQPKWQGRACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCA 69
           +Q + KWQG+A  EL G KA+Q+W  LEDFFGLDKWFPTL+ CIP++GISG+PGCVRFCA
Sbjct: 5   QQTKEKWQGKAKTELVGCKADQVWPLLEDFFGLDKWFPTLSYCIPVEGISGKPGCVRFCA 64

Query: 70  GFKTPVDNKDDDHEQSVNWTKQKLLAINAEEMTLTYSIVDGNVGFYGYVSTLTVAPKENG 129
           GFKTPVD      +Q++NWTKQKLL+I+  +   +Y+IVDGNVGF+ YVST+ V PK+NG
Sbjct: 65  GFKTPVDKHG---KQNLNWTKQKLLSIDPIQRVFSYAIVDGNVGFHSYVSTVRVLPKDNG 121

Query: 130 CYIEWKYEVEPVKGWRLEDLDCFISSGLQVMARRMKEALQAYE 172
           C IEW YEVE V+GWRLE LD FI SGL  M +RM+ AL+  E
Sbjct: 122 CEIEWIYEVEHVEGWRLEYLDLFIGSGLDEMGQRMQGALKTME 164

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388520475|gb|AFK48299.1| unknown [Medicago truncatula]

 Score =  217 bits (553), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 102/163 (62%), Positives = 127/163 (77%), Gaps = 3/163 (1%)

Query: 10  KQEQPKWQGRACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCA 69
           +Q + KWQG+A  EL G KA+Q+W  LEDFFGL+KWFPTL+ CIP++GISG+PGCVRFCA
Sbjct: 5   QQTKEKWQGKAKTELVGCKADQVWPLLEDFFGLNKWFPTLSYCIPVEGISGKPGCVRFCA 64

Query: 70  GFKTPVDNKDDDHEQSVNWTKQKLLAINAEEMTLTYSIVDGNVGFYGYVSTLTVAPKENG 129
           GFKTPVD      +Q++NW KQKLL+I+  +   +Y+IVDGNVGF+ YVST+ V PK+NG
Sbjct: 65  GFKTPVDKHG---KQNLNWIKQKLLSIDPIQRVFSYAIVDGNVGFHSYVSTVRVLPKDNG 121

Query: 130 CYIEWKYEVEPVKGWRLEDLDCFISSGLQVMARRMKEALQAYE 172
           C IEW YEVE V+GWRLE LD FI SGL  M +RM+ AL+  E
Sbjct: 122 CEIEWIYEVEHVEGWRLEYLDLFIGSGLDEMGQRMQGALKTME 164

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224141719|ref|XP_002324212.1| predicted protein [Populus trichocarpa] gi|222865646|gb|EEF02777.1| predicted protein [Populus trichocarpa]

 Score =  160 bits (405), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 74/165 (44%), Positives = 104/165 (63%), Gaps = 5/165 (3%)

Query: 13  QPKWQGRACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAGFK 72
           QPKW+G+  E L    A+QIW  L DFF L KWFP+L TC  I G +G+PGC+R C G  
Sbjct: 6   QPKWEGKVSERLPKATADQIWPLLNDFFNLHKWFPSLATCYGIHGTNGEPGCIRHCEGSS 65

Query: 73  TP-VDNKDDDHEQSVNWTKQKLLAINAEEMTLTYSIVDGNVGFYGYVSTLTVAPK----E 127
            P  D   D H Q V+W+ ++L  ++  E +L+Y IVD N+GF  YVST+ V P+    +
Sbjct: 66  IPSTDTNTDGHSQPVSWSSERLTVVDHVERSLSYEIVDSNIGFKSYVSTVKVVPQGDDGQ 125

Query: 128 NGCYIEWKYEVEPVKGWRLEDLDCFISSGLQVMARRMKEALQAYE 172
           +GC IEW + V+PV G  L++L      GLQ MA R+++A++A +
Sbjct: 126 DGCVIEWSFNVDPVAGLVLDELVRKYKVGLQQMAERLEDAVKALD 170

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147865770|emb|CAN83252.1| hypothetical protein VITISV_034795 [Vitis vinifera] gi|296081829|emb|CBI20834.3| unnamed protein product [Vitis vinifera]

 Score =  157 bits (398), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 72/162 (44%), Positives = 102/162 (62%), Gaps = 4/162 (2%)

Query: 9   GKQEQPKWQGRACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFC 68
            ++ Q KW+G+A  EL   K +Q+W FLEDF  L KW P+L TC  ++G+ GQPG +R+C
Sbjct: 2   AEETQFKWEGKATAELKSTKPDQVWPFLEDFCSLHKWMPSLDTCYQVEGVKGQPGLIRYC 61

Query: 69  AGFKTPVDNKDDDHEQSVNWTKQKLLAINAEEMTLTYSIVDGNVGFYGYVSTLTVAP-KE 127
           +      DN D   + +VNW K+KLL I+      +Y ++D N+GF  YV+T  V P   
Sbjct: 62  SSTAASPDNPD---QTTVNWVKEKLLTIDPINHCFSYEVLDNNMGFNSYVTTFKVIPING 118

Query: 128 NGCYIEWKYEVEPVKGWRLEDLDCFISSGLQVMARRMKEALQ 169
            GC I+W +  +PV+GWR EDL  +I S LQ MA++M+E LQ
Sbjct: 119 GGCLIQWSFVCDPVQGWRYEDLASYIDSSLQFMAKKMEETLQ 160

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225429349|ref|XP_002272536.1| PREDICTED: uncharacterized protein LOC100242274 [Vitis vinifera]

 Score =  155 bits (392), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 76/167 (45%), Positives = 103/167 (61%), Gaps = 8/167 (4%)

Query: 10  KQEQPKWQGRACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCA 69
           +  + KW+ +    L    A+QIWA   DFF   KWFP L +C  I GI+G+PGC+R+C 
Sbjct: 5   QNSETKWEAKVSTVLKEATADQIWALYRDFFNFHKWFPGLASCYGIHGINGEPGCIRYCG 64

Query: 70  GFKTPVDNKDDDHEQSVNWTKQKLLAINAEEMTLTYSIVDGNVGFYGYVSTLTVAP---- 125
           GF      K ++ E SV+W+K+KL A++  E +LTY IVD N+GF  YVST+ + P    
Sbjct: 65  GFSI----KSEEGENSVSWSKEKLTAVDPIERSLTYEIVDCNIGFKSYVSTVKITPCGSD 120

Query: 126 KENGCYIEWKYEVEPVKGWRLEDLDCFISSGLQVMARRMKEALQAYE 172
            E+GC I+W   V+PVKGW +EDL      GL  +ARRM+EAL   E
Sbjct: 121 SESGCEIDWWINVDPVKGWVMEDLVKKFEVGLARVARRMEEALTNLE 167

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255550946|ref|XP_002516521.1| hypothetical protein RCOM_0800710 [Ricinus communis] gi|223544341|gb|EEF45862.1| hypothetical protein RCOM_0800710 [Ricinus communis]

 Score =  153 bits (386), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 72/164 (43%), Positives = 103/164 (62%), Gaps = 3/164 (1%)

Query: 15  KWQGRACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAGFKTP 74
           KW+G+    L   KAEQIW    DFF + KW PTL TC  I G +G+ GCVR+CAGF  P
Sbjct: 12  KWEGKVSTGLPKAKAEQIWPLFTDFFNIHKWLPTLRTCYGICGTNGERGCVRYCAGFSIP 71

Query: 75  VDNKDDDH-EQSVNWTKQKLLAINAEEMTLTYSIVDGNVGFYGYVSTLTVAPK--ENGCY 131
            +  D  H   + +W+K++L+A++  E  LTY IVD N+GF  YVST+ + P    NGC 
Sbjct: 72  PEVTDKSHLNHNSSWSKERLVAVDHVERCLTYEIVDSNIGFKSYVSTVKIVPAGVGNGCV 131

Query: 132 IEWKYEVEPVKGWRLEDLDCFISSGLQVMARRMKEALQAYEVIM 175
           IEW ++V+PVKG+ L+DL       LQV+ +RM+++    + ++
Sbjct: 132 IEWSFQVDPVKGYVLDDLIKKYERALQVIGKRMEDSFDVSKPLL 175

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	181
TAIR|locus:2043575	167	AT2G25770 "AT2G25770" [Arabido	0.878	0.952	0.403	1.3e-31
TAIR|locus:2134123	157	AT4G32870 "AT4G32870" [Arabido	0.790	0.910	0.370	1.3e-27
TAIR|locus:2199932	155	MLP423 "MLP-like protein 423"	0.558	0.651	0.284	0.00023

TAIR|locus:2043575 AT2G25770 "AT2G25770" [Arabidopsis thaliana (taxid:3702)]

 Score = 347 (127.2 bits), Expect = 1.3e-31, P = 1.3e-31
 Identities = 67/166 (40%), Positives = 97/166 (58%)

Query:    10 KQEQP-KWQGRACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFC 68
             K   P KW  +    LT  K ++IW    DFF L KW PTL TC  + G +G+ GC+RFC
Sbjct:     3 KASSPEKWLAKVSVTLTKAKPDEIWPLFTDFFNLHKWLPTLATCHGVHGNNGEQGCIRFC 62

Query:    69 AGFKTPVDNKDDDHEQSVNWTKQKLLAINAEEMTLTYSIVDGNVGFYGYVSTLTVAPK-E 127
             +GF    +  D     +  W+K+KL+A+N  E  + Y IV+ N GF  YVST+ + P+ E
Sbjct:    63 SGFSIGSNGVDS----AARWSKEKLVAVNPVERVMRYEIVESNTGFESYVSTVKILPRGE 118

Query:   128 NGCYIEWKYEVEPVKGWRLEDLDCFISSGLQVMARRMKE-ALQAYE 172
             +GC IEW + V+PV+G  LE+L       L+++ + M+E AL+  E
Sbjct:   119 DGCVIEWSFTVDPVRGLSLENLVKKYEKALEIITKNMEEDALRRRE 164

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2134123 AT4G32870 "AT4G32870" [Arabidopsis thaliana (taxid:3702)]

 Score = 309 (113.8 bits), Expect = 1.3e-27, P = 1.3e-27
 Identities = 57/154 (37%), Positives = 91/154 (59%)

Query:    15 KWQGRACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAGFKTP 74
             KW+G+   ++ GV AE++W+   DF  + +WFP++ TC  +QG  G PG +R+C+  KT 
Sbjct:     9 KWEGKKVAQVNGVTAEKVWSVFSDFCNVQEWFPSVDTCYRVQGTDGVPGLIRYCSTTKTK 68

Query:    75 VDNKDDDHEQSVNWTKQKLLAINAEEMTLTYSIVDGNVGFYGYVSTLTVAP---KENGCY 131
                     E+   W K+KL+ I+     L+Y I++ NVGF  YV+T+ V P   ++    
Sbjct:    69 --------EEGSRWAKEKLVKIDPIGRCLSYEILENNVGFRSYVATVQVTPVDGEDQVSR 120

Query:   132 IEWKYEVEPVKGWRLEDLDCFISSGLQVMARRMK 165
             IEW +  +PV GW+ EDL+ ++   LQ MA +M+
Sbjct:   121 IEWSFVADPVDGWKKEDLESYVDFCLQHMANKME 154

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2199932 MLP423 "MLP-like protein 423" [Arabidopsis thaliana (taxid:3702)]

 Score = 102 (41.0 bits), Expect = 0.00023, P = 0.00023
 Identities = 33/116 (28%), Positives = 55/116 (47%)

Query:    29 AEQIWAFLEDFFGL-DKWFPT-LTTCIPIQGISGQPGCVRFCA-GFKTPVDNKDDDHEQS 85
             AE+ W  L D   L  K FP    T   + G    PG +R    G  +P+          
Sbjct:    17 AEKFWVALGDGINLFPKAFPNDYKTIQVLAGDGNAPGSIRLITYGEGSPL---------- 66

Query:    86 VNWTKQKLLAINAEEMTLTYSIVDGNV-GFYG-YVSTLTVAPKENGCYIEWKYEVE 139
             V  + +++ A++ E  +++YSI+ G +  +Y  +  T+TV PK+ G  ++W  E E
Sbjct:    67 VKISAERIEAVDLENKSMSYSIIGGEMLEYYKTFKGTITVIPKDGGSLLKWSGEFE 122


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.135   0.434    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      181       181   0.00095  109 3  11 22  0.44    32
                                                     31  0.40    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  615 (65 KB)
  Total size of DFA:  199 KB (2111 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  16.32u 0.15s 16.47t   Elapsed:  00:00:01
  Total cpu time:  16.32u 0.15s 16.47t   Elapsed:  00:00:01
  Start:  Fri May 10 13:10:43 2013   End:  Fri May 10 13:10:44 2013

GO:0006952 "defense response" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IDA

GO:0016556 "mRNA modification" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00016676001 SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (209 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	181
cd07821	140	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance	1e-24
pfam10604	140	pfam10604, Polyketide_cyc2, Polyketide cyclase / d	4e-14
pfam00407	150	pfam00407, Bet_v_1, Pathogenesis-related protein B	6e-04

>gnl|CDD|176863 cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins

 Score = 93.2 bits (232), Expect = 1e-24
 Identities = 40/142 (28%), Positives = 66/142 (46%), Gaps = 15/142 (10%)

Query: 29  AEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNW 88
           A+++WA L DF GL KW P + +C    G  G  G VR                 +    
Sbjct: 13  ADKVWALLSDFGGLHKWHPAVASCELEGGGPG-VGAVRTVTL-------------KDGGT 58

Query: 89  TKQKLLAINAEEMTLTYSIVDGNVGFYGYVSTLTVAPK-ENGCYIEWKYEVEPVKGWRLE 147
            +++LLA++  E   +Y IV+G +    YV+T+ V P+ + G  + W  E +P +G   E
Sbjct: 59  VRERLLALDDAERRYSYRIVEGPLPVKNYVATIRVTPEGDGGTRVTWTAEFDPPEGLTDE 118

Query: 148 DLDCFISSGLQVMARRMKEALQ 169
               F++   +     +K AL+
Sbjct: 119 LARAFLTGVYRAGLAALKAALE 140

The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate blocks substrate access to the phosphatase active site. A conserved Trp from PP2C inserts into PYL to lock the receptor in a closed formation. This group also contains Methylobacterium extorquens AM1 MxaD. The mxaD gene is located within the mxaFJGIR(S)ACKLDEHB cluster which encodes proteins involved in methanol oxidation. MxaD may participate in the periplasmic electron transport chain for oxidation of methanol. Mutants lacking MxaD exhibit a reduced growth on methanol, and a lower rate of respiration with methanol. Length = 140

>gnl|CDD|220822 pfam10604, Polyketide_cyc2, Polyketide cyclase / dehydrase and lipid transport

 Score = 65.5 bits (160), Expect = 4e-14
 Identities = 30/142 (21%), Positives = 48/142 (33%), Gaps = 25/142 (17%)

Query: 29  AEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNW 88
            E++WA + DF    +W P +      +   G P  V                       
Sbjct: 14  PEKVWALVSDFENWPRWHPGVLRV---ELEGGGPLGVVGTLRAG------------GGRT 58

Query: 89  TKQKLLAINAEEMTLTYSIVDGNVGFYGYVSTLTVAPKENGCYIEWKYEVEPVKGWRLED 148
            +++L+  +     L Y IV   +G   YV T TV P   G  + W  E +P     L  
Sbjct: 59  VREELVEYDPAGRRLEYRIV-EPLGVTNYVGTWTVTPAGGGTRVTWTGEFDPPGPLGLNG 117

Query: 149 LDCFISSGLQVMARRMKEALQA 170
                       A+ +K  ++A
Sbjct: 118 P---------AAAKAVKGDIEA 130

This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily. Length = 140

>gnl|CDD|215904 pfam00407, Bet_v_1, Pathogenesis-related protein Bet v I family

 Score = 38.0 bits (89), Expect = 6e-04
 Identities = 17/53 (32%), Positives = 32/53 (60%), Gaps = 5/53 (9%)

Query: 90  KQKLLAINAEEMTLTYSIVDGNV--GFYGYVSTLTVAPKENG---CYIEWKYE 137
           K+++ A + +  T+TYS+++G+V   +  +++TL V PK NG        +YE
Sbjct: 68  KERIEADDEKNKTITYSVLEGDVLEDYKSFITTLQVIPKSNGGSIVKWTIEYE 120

This family is named after Bet v 1, the major birch pollen allergen. This protein belongs to family 10 of plant pathogenesis-related proteins (PR-10), cytoplasmic proteins of 15-17 kd that are wide-spread among dicotyledonous plants. In recent years, a number of diverse plant proteins with low sequence similarity to Bet v 1 was identified. A classification by sequence similarity yielded several subfamilies related to PR-10: - Pathogenesis-related proteins PR-10: These proteins were identified as major tree pollen allergens in birch and related species (hazel, alder), as plant food allergens expressed in high levels in fruits, vegetables and seeds (apple, celery, hazelnut), and as pathogenesis-related proteins whose expression is induced by pathogen infection, wounding, or abiotic stress. Hyp-1, an enzyme involved in the synthesis of the bioactive naphthodianthrone hypericin in St. John's wort (Hypericum perforatum) also belongs to this family. Most of these proteins were found in dicotyledonous plants. In addition, related sequences were identified in monocots and conifers. - Cytokinin-specific binding proteins: These legume proteins bind cytokinin plant hormones. - (S)-Norcoclaurine synthases are enzymes catalyzing the condensation of dopamine and 4-hydroxyphenylacetaldehyde to (S)-norcoclaurine, the first committed step in the biosynthesis of benzylisoquinoline alkaloids such as morphine. -Major latex proteins and ripening-related proteins are proteins of unknown biological function that were first discovered in the latex of opium poppy (Papaver somniferum) and later found to be upregulated during ripening of fruits such as strawberry and cucumber. The occurrence of Bet v 1-related proteins is confined to seed plants with the exception of a cytokinin-binding protein from the moss Physcomitrella patens. Length = 150

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	181
cd07816	148	Bet_v1-like Ligand-binding bet_v_1 domain of major	99.93
PF00407	151	Bet_v_1: Pathogenesis-related protein Bet v I fami	99.86
cd07821	140	PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1),	99.78
PF10604	139	Polyketide_cyc2: Polyketide cyclase / dehydrase an	99.77
cd08866	144	SRPBCC_11 Ligand-binding SRPBCC domain of an uncha	99.73
cd08865	140	SRPBCC_10 Ligand-binding SRPBCC domain of an uncha	99.67
cd07819	140	SRPBCC_2 Ligand-binding SRPBCC domain of an unchar	99.66
cd08862	138	SRPBCC_Smu440-like Ligand-binding SRPBCC domain of	99.6
cd07818	150	SRPBCC_1 Ligand-binding SRPBCC domain of an unchar	99.59
cd07822	141	SRPBCC_4 Ligand-binding SRPBCC domain of an unchar	99.55
cd07813	138	COQ10p_like Coenzyme Q-binding protein COQ10p and	99.55
cd08861	142	OtcD1_ARO-CYC_like N-terminal and C-terminal aroma	99.55
cd08860	146	TcmN_ARO-CYC_like N-terminal aromatase/cyclase dom	99.51
cd07812	141	SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SR	99.47
cd07824	146	SRPBCC_6 Ligand-binding SRPBCC domain of an unchar	99.46
cd07817	139	SRPBCC_8 Ligand-binding SRPBCC domain of an unchar	99.44
cd07814	139	SRPBCC_CalC_Aha1-like Putative hydrophobic ligand-	99.44
cd07825	144	SRPBCC_7 Ligand-binding SRPBCC domain of an unchar	99.41
cd05018	144	CoxG Carbon monoxide dehydrogenase subunit G (CoxG	99.38
cd07820	137	SRPBCC_3 Ligand-binding SRPBCC domain of an unchar	99.37
PRK10724	158	hypothetical protein; Provisional	99.27
PF03364	130	Polyketide_cyc: Polyketide cyclase / dehydrase and	99.21
cd07823	146	SRPBCC_5 Ligand-binding SRPBCC domain of an unchar	99.2
cd08898	145	SRPBCC_CalC_Aha1-like_5 Putative hydrophobic ligan	99.12
cd08893	136	SRPBCC_CalC_Aha1-like_GntR-HTH Putative hydrophobi	98.94
cd08899	157	SRPBCC_CalC_Aha1-like_6 Putative hydrophobic ligan	98.89
cd08894	139	SRPBCC_CalC_Aha1-like_1 Putative hydrophobic ligan	98.74
cd08897	133	SRPBCC_CalC_Aha1-like_4 Putative hydrophobic ligan	98.73
cd08876	195	START_1 Uncharacterized subgroup of the steroidoge	98.73
cd07826	142	SRPBCC_CalC_Aha1-like_9 Putative hydrophobic ligan	98.72
COG3427	146	Carbon monoxide dehydrogenase subunit G, CoxG [Ene	98.7
cd08895	146	SRPBCC_CalC_Aha1-like_2 Putative hydrophobic ligan	98.68
COG5637	217	Predicted integral membrane protein [Function unkn	98.62
cd08896	146	SRPBCC_CalC_Aha1-like_3 Putative hydrophobic ligan	98.6
cd08900	143	SRPBCC_CalC_Aha1-like_7 Putative hydrophobic ligan	98.58
COG2867	146	Oligoketide cyclase/lipid transport protein [Lipid	98.55
cd08892	126	SRPBCC_Aha1 Putative hydrophobic ligand-binding SR	98.55
cd08901	136	SRPBCC_CalC_Aha1-like_8 Putative hydrophobic ligan	98.5
cd08891	149	SRPBCC_CalC Ligand-binding SRPBCC domain of Microm	98.48
PF06240	140	COXG: Carbon monoxide dehydrogenase subunit G (Cox	98.46
PF08327	124	AHSA1: Activator of Hsp90 ATPase homolog 1-like pr	98.43
COG3832	149	Uncharacterized conserved protein [Function unknow	98.02
PTZ00220	132	Activator of HSP-90 ATPase; Provisional	97.98
cd08874	205	START_STARD9-like C-terminal START domain of mamma	97.96
cd08905	209	START_STARD1-like Cholesterol-binding START domain	97.6
cd08873	235	START_STARD14_15-like Lipid-binding START domain o	97.58
cd08870	209	START_STARD2_7-like Lipid-binding START domain of	97.56
cd08914	236	START_STARD15-like Lipid-binding START domain of m	97.48
cd08871	222	START_STARD10-like Lipid-binding START domain of m	97.46
cd08911	207	START_STARD7-like Lipid-binding START domain of ma	97.41
cd00177	193	START Lipid-binding START domain of mammalian STAR	97.39
cd08906	209	START_STARD3-like Cholesterol-binding START domain	97.38
cd08869	197	START_RhoGAP C-terminal lipid-binding START domain	97.24
cd08877	215	START_2 Uncharacterized subgroup of the steroidoge	97.24
PF10698	159	DUF2505: Protein of unknown function (DUF2505); In	97.2
cd08868	208	START_STARD1_3_like Cholesterol-binding START doma	97.14
cd08903	208	START_STARD5-like Lipid-binding START domain of ma	97.09
cd08913	240	START_STARD14-like Lipid-binding START domain of m	97.0
COG4276	153	Uncharacterized conserved protein [Function unknow	96.97
cd08908	204	START_STARD12-like C-terminal lipid-binding START	96.85
smart00234	206	START in StAR and phosphatidylcholine transfer pro	96.75
PF08982	149	DUF1857: Domain of unknown function (DUF1857); Int	96.53
cd08910	207	START_STARD2-like Lipid-binding START domain of ma	96.31
cd08867	206	START_STARD4_5_6-like Lipid-binding START domain o	95.97
cd08904	204	START_STARD6-like Lipid-binding START domain of ma	95.51
KOG3177	227	consensus Oligoketide cyclase/lipid transport prot	94.61
cd08872	235	START_STARD11-like Ceramide-binding START domain o	94.19
cd08863	141	SRPBCC_DUF1857 DUF1857, an uncharacterized ligand-	93.44
cd08902	202	START_STARD4-like Lipid-binding START domain of ma	91.34
PF01852	206	START: START domain; InterPro: IPR002913 START (St	90.41
cd08909	205	START_STARD13-like C-terminal lipid-binding START	89.29
PF11687	120	DUF3284: Domain of unknown function (DUF3284); Int	89.05
COG4891	93	Uncharacterized conserved protein [Function unknow	85.45

>cd07816 Bet_v1-like Ligand-binding bet_v_1 domain of major pollen allergen of white birch (Betula verrucosa), Bet v 1, and related proteins

Probab=99.93  E-value=4e-24  Score=163.20  Aligned_cols=134  Identities=25%  Similarity=0.452  Sum_probs=108.1

Q ss_pred             EEEEEEeCCCHHHHHHHHhccCC-c-ccccccceeEEEecCCCCCCceEEEEeeeecCCCCCCCCCcCccceEEEEEEEE
Q 030202           19 RACEELTGVKAEQIWAFLEDFFG-L-DKWFPTLTTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLAI   96 (181)
Q Consensus        19 ~v~~~I~~Ap~e~VW~~l~Df~~-~-~~w~P~v~~~~~~~G~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~~   96 (181)
                      ..+++| +||+|+||++++||.+ + +.|.|.+.+|+.++|+ +++|++|.+++.    .+  +    ...+++|||+.+
T Consensus         4 ~~e~~i-~a~ad~vW~~~~~~~~~~~~~~~p~v~~~~~~eG~-~~~GsvR~~~~~----~~--~----~~~~~kE~l~~~   71 (148)
T cd07816           4 EHEVEL-KVPAEKLWKAFVLDSHLLPPKLPPVIKSVELLEGD-GGPGSIKLITFG----PG--G----KVKYVKERIDAV   71 (148)
T ss_pred             EEEEEe-cCCHHHHHHHHhcChhhccccccccccEEEEEecC-CCCceEEEEEEc----CC--C----cceEEEEEEEEE
Confidence            467888 9999999999999994 5 6788999999988887 789999999972    22  1    134799999999


Q ss_pred             ecCCCeEEEEEeeccc---ceeeEEEEEEEEEcCC-ceEEEEEEEEeeCCCC--CHHHHHHHHHHHHHHHHHHHHHHH
Q 030202           97 NAEEMTLTYSIVDGNV---GFYGYVSTLTVAPKEN-GCYIEWKYEVEPVKGW--RLEDLDCFISSGLQVMARRMKEAL  168 (181)
Q Consensus        97 D~~~~~~~y~v~~g~~---p~~~~~~t~~v~p~~~-gT~v~W~~~~~p~~~~--~~~~~~~~~~~gl~~l~~~le~~~  168 (181)
                      |+++|+++|++++|++   ++++|.++++|.|.++ +|.++|+++|+|..+.  .++.+..    .+..+.+.+++++
T Consensus        72 D~~~~~~~y~vveg~~~~~~~~~y~~t~~v~~~~~~~t~v~Wt~~ye~~~~~~~~p~~~~~----~~~~~~~~~~~~~  145 (148)
T cd07816          72 DEENKTYKYTVIEGDVLKDGYKSYKVEIKFVPKGDGGCVVKWTIEYEKKGDAEPPEEEIKA----GKEKALKMFKAVE  145 (148)
T ss_pred             cccccEEEEEEEecccccCceEEEEEEEEEEECCCCCEEEEEEEEEEECCCCCCCHHHHHh----HHHHHHHHHHHHH
Confidence            9999999999999987   5999999999999965 6999999999998763  3444433    3345555555554

This family includes the ligand binding domain of Bet v 1 (the major pollen allergen of white birch, Betula verrucosa) and related proteins. In addition to birch Bet v 1, this family includes other plant intracellular pathogenesis-related class 10 (PR-10) proteins, norcoclaurine synthases (NCSs), cytokinin binding proteins (CSBPs), major latex proteins (MLPs), and ripening-related proteins. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Members of this family binds a diverse range of ligands. Bet v 1 can bind brassinosteroids, cytokinins, flavonoids and fatty acids. Hyp-1, a PR-10 from Hypericum perforatum/St. John's wort, catalyzes the condensation of two molecules of emodin to the bioactive naphthodianth

>PF00407 Bet_v_1: Pathogenesis-related protein Bet v I family; InterPro: IPR000916 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms

Probab=99.86  E-value=4.9e-20  Score=141.37  Aligned_cols=139  Identities=24%  Similarity=0.375  Sum_probs=110.1

Q ss_pred             EEEEEEeCCCHHHHHHHHhccCCc-cccccc-ceeEEEecCCCCCCceEEEEeeeecCCCCCCCCCcCccceEEEEEEEE
Q 030202           19 RACEELTGVKAEQIWAFLEDFFGL-DKWFPT-LTTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLAI   96 (181)
Q Consensus        19 ~v~~~I~~Ap~e~VW~~l~Df~~~-~~w~P~-v~~~~~~~G~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~~   96 (181)
                      ..++++ ++||+++|+++.+..++ |+.+|. +.++++++|+++..|+||.+++.  +  +  |   + ...++||++.+
T Consensus         7 ~~E~~~-~~~a~k~~ka~~~~~~llpki~P~~i~sve~~eGdgg~gGSIk~~~f~--~--~--~---~-~~~~Kekve~~   75 (151)
T PF00407_consen    7 EVEVEV-KVSADKLWKAFKSSPHLLPKILPHVIKSVEVVEGDGGPGGSIKKWTFG--P--G--G---P-FKYVKEKVEAI   75 (151)
T ss_dssp             EEEEEE-SS-HHHHHHHHTTHHHHHHHHSTTTEEEEEEEESSSSTTT-EEEEEEE--T--T--S---S-EEEEEEEEEEE
T ss_pred             EEEEEe-cCCHHHHHHHHhcCccchhhhChhhceeEEEEccCCCCCCeEEEEEec--C--C--C---C-cceeEEEEEee
Confidence            457888 99999999999876555 999996 45567778876555699999983  2  2  3   2 35899999999


Q ss_pred             ecCCCeEEEEEeeccc--ceeeEEEEEEEEEcCCc-eEEEEEEEEeeCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 030202           97 NAEEMTLTYSIVDGNV--GFYGYVSTLTVAPKENG-CYIEWKYEVEPVKGWRLEDLDCFISSGLQVMARRMKEALQA  170 (181)
Q Consensus        97 D~~~~~~~y~v~~g~~--p~~~~~~t~~v~p~~~g-T~v~W~~~~~p~~~~~~~~~~~~~~~gl~~l~~~le~~~~~  170 (181)
                      |+++++++|++++|.+  .+..|..++++.|.++| |.++|+++|++..+..+...  -+..++..|.+.+|+|+++
T Consensus        76 D~~~~~~~y~viEGd~l~~~~~~~~~~~~~~~~~g~~v~k~t~~Ye~~~~~~~~p~--~~~~~~~~~~K~ieayLla  150 (151)
T PF00407_consen   76 DEENKTITYTVIEGDVLGDYKSFKSTIQKIPKGDGGCVVKWTIEYEKKGEDVPPPE--KYLDFAVGMFKAIEAYLLA  150 (151)
T ss_dssp             ETTTTEEEEEEEEETTGTTTEEEEEEEEEEEETTSCEEEEEEEEEEESSTSCHHHH--HHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCcEEEEEEEeccccccEEEEEEEEEecCCCCCceEEEEEEEEEecCCCCCCcH--HHHHHHHHHHHHHHHHHhc
Confidence            9999999999999985  47789999999998875 99999999999876553322  2444588999999999976

A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Aln g 1, Api g 1, Bet v 1, Car b 1, Cor a 1, Dau c 1, Mal d 1 and Pru a 1. Trees within the order Fagales possess particularly potent allergens, e.g. Bet v1, the major White Birch (Betula verrucosa) pollen antigen. Bet v1 is the main cause of type I allergies observed in early spring. Type I, or immunoglobulin E-mediated (IgE-mediated) allergies affect 1 in 5 people in Europe and North America. Commonly-observed symptoms are hay fever, dermatitis, asthma and, in severe cases, anaphylactic shock. First contact with these allergens results in sensitisation; subsequent contact produces a cross-linking reaction of IgE on mast cells and concomitant release of histamine. The inevitable symptoms of an allergic reaction ensue. Recent NMR analysis [] has confirmed earlier predictions of the protein structure and site of the major T-cell epitope []. The Bet v1 protein comprises 6 anti-parallel beta-strands and 3 alpha-helices. Four of the strands dominate the global fold, and 2 of the helices form a C-terminal amphipathic helical motif. This motif is believed to be the T-cell epitope. Other proteins belonging to this family include the major pollen allergens: Aln g I from Alnus glutinosa (Alder); Api G I from Apium graveolens (Celery); Car b I from Carpinus betulus (European hornbeam); Cor a I from Corylus avellana (European hazel); Mal d I from Malus domestica (Apple). The motif is also found in: the wound-induced protein AoPR1 from Asparagus officinalis (Garden asparagus); pathogenesis-related proteins from Phaseolus vulgaris (Kidney bean) and Petroselinum crispum (Parsley) (PR1-1 and PR1-3); the disease resistance response proteins, STH-2 and STH-21, from Solanum tuberosum (Potato) and pI49, pI176 and DRRG49-C from Pisum sativum (Garden pea); the P. sativum abscisic acid-responsive proteins ABR17 and ABR18; and the stress-induced protein SAM22 from Glycine max (Soybean). ; GO: 0006952 defense response, 0009607 response to biotic stimulus; PDB: 1IFV_A 4A8V_A 4A8U_A 2K7H_A 2QIM_A 3E85_A 1H2O_A 1E09_A 1QMR_A 1FSK_D ....

>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins

Probab=99.78  E-value=2.9e-17  Score=121.02  Aligned_cols=135  Identities=29%  Similarity=0.543  Sum_probs=105.0

Q ss_pred             EEEEEEeCCCHHHHHHHHhccCCcccccccceeEEEecCCCCCCceEEEEeeeecCCCCCCCCCcCccceEEEEEEEEec
Q 030202           19 RACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLAINA   98 (181)
Q Consensus        19 ~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~G~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~~D~   98 (181)
                      ..+++| +||+++||+++.|+.++++|+|.+.+++...+.+ ++|+++.+..     .+  |      ..++++++.+|+
T Consensus         4 ~~~~~i-~a~~~~V~~~l~d~~~~~~w~~~~~~~~~~~~~~-~~g~~~~~~~-----~~--g------~~~~~~i~~~~~   68 (140)
T cd07821           4 TVSVTI-DAPADKVWALLSDFGGLHKWHPAVASCELEGGGP-GVGAVRTVTL-----KD--G------GTVRERLLALDD   68 (140)
T ss_pred             EEEEEE-CCCHHHHHHHHhCcCchhhhccCcceEEeecCCC-CCCeEEEEEe-----CC--C------CEEEEEehhcCc
Confidence            467888 9999999999999999999999998888766544 6899888875     12  2      168899999998


Q ss_pred             CCCeEEEEEeecccceeeEEEEEEEEEcCC-ceEEEEEEEEeeCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 030202           99 EEMTLTYSIVDGNVGFYGYVSTLTVAPKEN-GCYIEWKYEVEPVKGWRLEDLDCFISSGLQVMARRMKEAL  168 (181)
Q Consensus        99 ~~~~~~y~v~~g~~p~~~~~~t~~v~p~~~-gT~v~W~~~~~p~~~~~~~~~~~~~~~gl~~l~~~le~~~  168 (181)
                      .+++++|++.++..|+..+.++++|+|.++ +|+|+|+..+++..+.....+...+..+++...+.|++++
T Consensus        69 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~t~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~  139 (140)
T cd07821          69 AERRYSYRIVEGPLPVKNYVATIRVTPEGDGGTRVTWTAEFDPPEGLTDELARAFLTGVYRAGLAALKAAL  139 (140)
T ss_pred             cCCEEEEEecCCCCCcccceEEEEEEECCCCccEEEEEEEEecCCCcchHHHHHHHHHHHHHHHHHHHHhh
Confidence            658999999987677888899999999987 7999999999987543333334445555555555555543

The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate

>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis

Probab=99.77  E-value=3.1e-16  Score=115.55  Aligned_cols=134  Identities=21%  Similarity=0.414  Sum_probs=98.0

Q ss_pred             eeeEEEEEEeCCCHHHHHHHHhccCCcccccccceeEEEecCCCCCCceEEEEeeeecCCCCCCCCCcCccceEEEEEEE
Q 030202           16 WQGRACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLA   95 (181)
Q Consensus        16 w~~~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~G~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~   95 (181)
                      ++-.++++| +||+++||++++|+.++++|.|.+..++..++  +++|..+.+..     .   |  .   ..++++++.
T Consensus         2 ~~~~~~~~v-~a~~e~V~~~l~d~~~~~~w~~~~~~~~~~~~--~~~~~~~~~~~-----~---g--~---~~~~~~i~~   65 (139)
T PF10604_consen    2 FKVEVSIEV-PAPPEAVWDLLSDPENWPRWWPGVKSVELLSG--GGPGTERTVRV-----A---G--R---GTVREEITE   65 (139)
T ss_dssp             EEEEEEEEE-SS-HHHHHHHHTTTTGGGGTSTTEEEEEEEEE--CSTEEEEEEEE-----C---S--C---SEEEEEEEE
T ss_pred             EEEEEEEEE-CCCHHHHHHHHhChhhhhhhhhceEEEEEccc--cccceeEEEEe-----c---c--c---cceeEEEEE
Confidence            455788999 99999999999999999999999999987762  23465566653     2   2  1   279999999


Q ss_pred             EecCCCeEEEEEeecccceeeEEEEEEEEEcCCceEEEEEEEEee-CCCCCH-HHHHHHHHHHHHHHHHHHHHH
Q 030202           96 INAEEMTLTYSIVDGNVGFYGYVSTLTVAPKENGCYIEWKYEVEP-VKGWRL-EDLDCFISSGLQVMARRMKEA  167 (181)
Q Consensus        96 ~D~~~~~~~y~v~~g~~p~~~~~~t~~v~p~~~gT~v~W~~~~~p-~~~~~~-~~~~~~~~~gl~~l~~~le~~  167 (181)
                      +++.++.+.|++.  ..|+..+..+++|.|.++||+|+|++++++ ..+... ..+...+...++...++|+++
T Consensus        66 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~gt~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~  137 (139)
T PF10604_consen   66 YDPEPRRITWRFV--PSGFTNGTGRWRFEPVGDGTRVTWTVEFEPGLPGWLAGPLLRPAVKRIVREALENLKRA  137 (139)
T ss_dssp             EETTTTEEEEEEE--SSSSCEEEEEEEEEEETTTEEEEEEEEEEESCTTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ecCCCcEEEEEEE--ecceeEEEEEEEEEEcCCCEEEEEEEEEEEeccchhhHHHHHHHHHHHHHHHHHHHhcc
Confidence            9987899999996  556777899999999999999999999996 323332 223333444444444444433

It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....

>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=99.73  E-value=4.3e-16  Score=116.53  Aligned_cols=135  Identities=16%  Similarity=0.215  Sum_probs=97.4

Q ss_pred             EEEEEEeCCCHHHHHHHHhccCCcccccccceeEEEecCCCCCC-----ceEEEEeeeecCCCCCCCCCcCccceEEEEE
Q 030202           19 RACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQP-----GCVRFCAGFKTPVDNKDDDHEQSVNWTKQKL   93 (181)
Q Consensus        19 ~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~G~~~~v-----GsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl   93 (181)
                      +.++.| +||+++||+++.|++++++|+|.+.+|+++++.+++.     |..+.+..   .        .  ...+..++
T Consensus         2 ~~~~~i-~a~~~~Vw~~l~D~~~~~~w~p~v~~~~~l~~~~~~~~~~~~~~~~~~~~---~--------~--~~~v~~~~   67 (144)
T cd08866           2 VARVRV-PAPPETVWAVLTDYDNLAEFIPNLAESRLLERNGNRVVLEQTGKQGILFF---K--------F--EARVVLEL   67 (144)
T ss_pred             eEEEEE-CCCHHHHHHHHhChhhHHhhCcCceEEEEEEcCCCEEEEEEeeeEEEEee---e--------e--eEEEEEEE
Confidence            357888 9999999999999999999999999999876533221     11111110   0        0  01345566


Q ss_pred             EEEecCCCeEEEEEeecccceeeEEEEEEEEEcCC--ceEEEEEEEEeeCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 030202           94 LAINAEEMTLTYSIVDGNVGFYGYVSTLTVAPKEN--GCYIEWKYEVEPVKGWRLEDLDCFISSGLQVMARRMKEALQ  169 (181)
Q Consensus        94 ~~~D~~~~~~~y~v~~g~~p~~~~~~t~~v~p~~~--gT~v~W~~~~~p~~~~~~~~~~~~~~~gl~~l~~~le~~~~  169 (181)
                      .+.++.++.++|++++|+  +..+.++++|+|.++  +|+|+|.++++|..+.....+..+++..+..+.+.|+++++
T Consensus        68 ~~~~~~~~~i~~~~~~g~--~~~~~g~w~~~~~~~~~~t~v~~~~~~~~~~~~p~~l~~~~~~~~~~~~l~~lr~~ae  143 (144)
T cd08866          68 REREEFPRELDFEMVEGD--FKRFEGSWRLEPLADGGGTLLTYEVEVKPDFFAPVFLVEFVLRQDLPTNLLAIRAEAE  143 (144)
T ss_pred             EEecCCCceEEEEEcCCc--hhceEEEEEEEECCCCCeEEEEEEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            666655789999999774  577899999999986  59999999999975444433355677777777777777664

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=99.67  E-value=7.3e-15  Score=107.95  Aligned_cols=106  Identities=17%  Similarity=0.197  Sum_probs=84.1

Q ss_pred             EEEEEeCCCHHHHHHHHhccCCcccccccceeEEEecCCCCCCceEEEEeeeecCCCCCCCCCcCccceEEEEEEEEecC
Q 030202           20 ACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLAINAE   99 (181)
Q Consensus        20 v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~G~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~~D~~   99 (181)
                      .+++| +||+++||+++.|+.++++|.|.+..+..+.+.+.++|+...+....    +  |  .  .-.++++++.+++ 
T Consensus         3 ~~~~i-~ap~~~Vw~~l~d~~~~~~w~~~~~~~~~~~~~~~~~g~~~~~~~~~----~--g--~--~~~~~~~v~~~~p-   70 (140)
T cd08865           3 ESIVI-ERPVEEVFAYLADFENAPEWDPGVVEVEKITDGPVGVGTRYHQVRKF----L--G--R--RIELTYEITEYEP-   70 (140)
T ss_pred             eEEEE-cCCHHHHHHHHHCccchhhhccCceEEEEcCCCCCcCccEEEEEEEe----c--C--c--eEEEEEEEEEecC-
Confidence            57788 99999999999999999999999988887665455678777665421    1  2  1  1156899999987 


Q ss_pred             CCeEEEEEeecccceeeEEEEEEEEEcCCceEEEEEEEEee
Q 030202          100 EMTLTYSIVDGNVGFYGYVSTLTVAPKENGCYIEWKYEVEP  140 (181)
Q Consensus       100 ~~~~~y~v~~g~~p~~~~~~t~~v~p~~~gT~v~W~~~~~p  140 (181)
                      ++.+.|....+++   .+..+++|.|.++||+++|++++++
T Consensus        71 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~t~v~~~~~~~~  108 (140)
T cd08865          71 GRRVVFRGSSGPF---PYEDTYTFEPVGGGTRVRYTAELEP  108 (140)
T ss_pred             CcEEEEEecCCCc---ceEEEEEEEEcCCceEEEEEEEEcc
Confidence            6899998776533   3688999999988999999999986

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=99.66  E-value=2e-14  Score=106.26  Aligned_cols=134  Identities=13%  Similarity=0.082  Sum_probs=89.2

Q ss_pred             EEEEEEeCCCHHHHHHHHhccCCcccccccceeEEEecCCCCCCceEEEEeeeecCCCCCCCCCcCccceEEEEEEEEec
Q 030202           19 RACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLAINA   98 (181)
Q Consensus        19 ~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~G~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~~D~   98 (181)
                      +.+++| +||+++||++|.|+.++++|+|.+.+++.+.+.+++.+....+...    .+  +       ...+.+..++.
T Consensus         5 ~~s~~i-~ap~e~V~~~l~D~~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~----~~--~-------~~~~~~~~~~~   70 (140)
T cd07819           5 SREFEI-EAPPAAVMDVLADVEAYPEWSPKVKSVEVLLRDNDGRPEMVRIGVG----AY--G-------IKDTYALEYTW   70 (140)
T ss_pred             EEEEEE-eCCHHHHHHHHhChhhhhhhCcceEEEEEeccCCCCCEEEEEEEEe----ee--e-------EEEEEEEEEEE
Confidence            457888 9999999999999999999999999998865433322222223220    11  1       22233334433


Q ss_pred             C-CCeEEEEEeecccceeeEEEEEEEEEcCCceEEEEEEEEeeCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 030202           99 E-EMTLTYSIVDGNVGFYGYVSTLTVAPKENGCYIEWKYEVEPVKGWRLEDLDCFISSGLQVMARRMKEA  167 (181)
Q Consensus        99 ~-~~~~~y~v~~g~~p~~~~~~t~~v~p~~~gT~v~W~~~~~p~~~~~~~~~~~~~~~gl~~l~~~le~~  167 (181)
                      . .+.++|+..++. +...+.++++|.|.++||+|+|+.++++...........+.+.++..+.+.|+++
T Consensus        71 ~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~t~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  139 (140)
T cd07819          71 DGAGSVSWTLVEGE-GNRSQEGSYTLTPKGDGTRVTFDLTVELTVPLPGFLKRKAEPLVLDEALKGLKKR  139 (140)
T ss_pred             cCCCcEEEEEeccc-ceeEEEEEEEEEECCCCEEEEEEEEEEecCCCCHHHHHHhhhHHHHHHHHhHhhh
Confidence            2 578999988764 5677889999999999999999999997543222222333444455555555543

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd08862 SRPBCC_Smu440-like Ligand-binding SRPBCC domain of Streptococcus mutans Smu

Probab=99.60  E-value=1.7e-13  Score=101.11  Aligned_cols=132  Identities=13%  Similarity=0.024  Sum_probs=91.0

Q ss_pred             eEEEEEEeCCCHHHHHHHHhccCCcccccccceeEEEecCCCCCCceEEEEeeeecCCCCCCCCCcCccceEEEEEEEEe
Q 030202           18 GRACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLAIN   97 (181)
Q Consensus        18 ~~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~G~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~~D   97 (181)
                      -+.+++| +||+++||+++.|+.++++|+|.+.+++...+.+ ++|+...+..     .+  +      ..+..++++++
T Consensus         3 ~~~~~~i-~Ap~~~Vw~~~~d~~~~~~w~~~~~~~~~~~~~~-~~G~~~~~~~-----~~--~------~~~~~~i~~~~   67 (138)
T cd08862           3 FEATIVI-DAPPERVWAVLTDVENWPAWTPSVETVRLEGPPP-AVGSSFKMKP-----PG--L------VRSTFTVTELR   67 (138)
T ss_pred             EEEEEEE-cCCHHHHHHHHHhhhhcccccCcceEEEEecCCC-CCCcEEEEec-----CC--C------CceEEEEEEec
Confidence            3568889 9999999999999999999999998888765432 6776655553     11  1      15778899998


Q ss_pred             cCCCeEEEEEeecccceeeEEEEEEEEEcC-CceEEEEEEEEeeCCC-CCHHHHHHHHHHHHHHHHHHHHHHH
Q 030202           98 AEEMTLTYSIVDGNVGFYGYVSTLTVAPKE-NGCYIEWKYEVEPVKG-WRLEDLDCFISSGLQVMARRMKEAL  168 (181)
Q Consensus        98 ~~~~~~~y~v~~g~~p~~~~~~t~~v~p~~-~gT~v~W~~~~~p~~~-~~~~~~~~~~~~gl~~l~~~le~~~  168 (181)
                      + +++++|+....   ...+..+++|++.+ ++|+++|++++..... .....+...++.+++...+.|++.+
T Consensus        68 p-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~  136 (138)
T cd08862          68 P-GHSFTWTGPAP---GISAVHRHEFEAKPDGGVRVTTSESLSGPLAFLFGLFVGKKLRALLPEWLEGLKAAA  136 (138)
T ss_pred             C-CCEEEEEecCC---CEEEEEEEEEEEcCCCcEEEEEEEEeecchHHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence            7 56899875532   23456799999988 5799999999885321 1112233444444444444444443

440 and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Streptococcus mutans Smu.440 and related proteins. This domain belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Streptococcus mutans is a dental pathogen, and the leading cause of dental caries. In this pathogen, the gene encoding Smu.440 is in the same operon as the gene encoding SMU.441, a member of the MarR protein family of transcriptional regulators involved in multiple antibiotic resistance. It has been suggested that SMU.440 is involved in polyketide-like antibiotic resistance.

>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=99.59  E-value=9.9e-14  Score=104.48  Aligned_cols=111  Identities=14%  Similarity=0.179  Sum_probs=82.2

Q ss_pred             eeeEEEEEEeCCCHHHHHHHHhccCCcccccccceeEEE----ecCCCCCCceEEEEeeeecCCCCCCCCCcCccceEEE
Q 030202           16 WQGRACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIP----IQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQ   91 (181)
Q Consensus        16 w~~~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~----~~G~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~E   91 (181)
                      |.-+.++.| +||+++||+++.|+.++++|+|.+..+..    ..+...++|+...+..   + .+. |       ....
T Consensus         2 ~~~~~s~~I-~ap~e~V~~~i~D~~~~~~W~p~~~~~~~~~~~~~~~~~~~G~~~~~~~---~-~~~-~-------~~~~   68 (150)
T cd07818           2 YRVERSIVI-NAPPEEVFPYVNDLKNWPEWSPWEKLDPDMKRTYSGPDSGVGASYSWEG---N-DKV-G-------EGEM   68 (150)
T ss_pred             eEEEEEEEE-eCCHHHHHHHHhCcccCcccCchhhcCcceEEEecCCCCCCCeEEEEec---C-Ccc-c-------ceEE
Confidence            566789999 99999999999999999999997654321    1233456787766653   1 100 1       3456


Q ss_pred             EEEEEecCCCeEEEEEeecccce-eeEEEEEEEEEcCCceEEEEEEEEeeC
Q 030202           92 KLLAINAEEMTLTYSIVDGNVGF-YGYVSTLTVAPKENGCYIEWKYEVEPV  141 (181)
Q Consensus        92 rl~~~D~~~~~~~y~v~~g~~p~-~~~~~t~~v~p~~~gT~v~W~~~~~p~  141 (181)
                      +++.+++ ++++.|++..+ .|+ .....+++|+|.++||+|+|+++++..
T Consensus        69 ~v~~~~p-~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~gT~v~~~~~~~~~  117 (150)
T cd07818          69 EITESVP-NERIEYELRFI-KPFEATNDVEFTLEPVGGGTKVTWGMSGELP  117 (150)
T ss_pred             EEEecCC-CcEEEEEEEec-CCccccceEEEEEEEcCCceEEEEEEEecCC
Confidence            7888876 67899998853 233 367899999999889999999999854

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=99.55  E-value=8e-13  Score=97.28  Aligned_cols=136  Identities=15%  Similarity=0.171  Sum_probs=94.8

Q ss_pred             EEEEEEeCCCHHHHHHHHhccCCcccccccceeEEEecCCCCCCceEEEEeeeecCCCCCCCCCcCccceEEEEEEEEec
Q 030202           19 RACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLAINA   98 (181)
Q Consensus        19 ~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~G~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~~D~   98 (181)
                      +.+++| +||+++||+++.|+.++++|+|.+..+....   ..+|+...+... .+  +  |   . ...+.++++++|+
T Consensus         3 ~~~~~i-~ap~~~Vw~~~~d~~~~~~w~~~~~~~~~~~---~~~G~~~~~~~~-~~--~--~---~-~~~~~~~v~~~~p   69 (141)
T cd07822           3 STEIEI-NAPPEKVWEVLTDFPSYPEWNPFVRSATGLS---LALGARLRFVVK-LP--G--G---P-PRSFKPRVTEVEP   69 (141)
T ss_pred             EEEEEe-cCCHHHHHHHHhccccccccChhheeEeccc---cCCCCEEEEEEe-CC--C--C---C-cEEEEEEEEEEcC
Confidence            467888 9999999999999999999999876655431   345655555431 11  1  1   1 1267889999998


Q ss_pred             CCCeEEEEEeecccceeeEEEEEEEEEcC-CceEEEEEEEEeeCCCC-CHHHHHHHHHHHHHHHHHHHHHHH
Q 030202           99 EEMTLTYSIVDGNVGFYGYVSTLTVAPKE-NGCYIEWKYEVEPVKGW-RLEDLDCFISSGLQVMARRMKEAL  168 (181)
Q Consensus        99 ~~~~~~y~v~~g~~p~~~~~~t~~v~p~~-~gT~v~W~~~~~p~~~~-~~~~~~~~~~~gl~~l~~~le~~~  168 (181)
                       ++++.|+...++.+......+++|.|.+ ++|+++|+..+...... ....+...+..+++.+.+.|++++
T Consensus        70 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~T~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~~~~  140 (141)
T cd07822          70 -PRRLAWRGGLPFPGLLDGEHSFELEPLGDGGTRFVHRETFSGLLAPLVLLGLGRDLRAGFEAMNEALKARA  140 (141)
T ss_pred             -CCEeEEEecCCCCcEeeEEEEEEEEEcCCCcEEEEEeeEEEEEEhHHhhhhhHHHHhHhHHHHHHHHHHhh
Confidence             6799999887655444567799999984 57999999888743211 112234567777777777777665

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd07813 COQ10p_like Coenzyme Q-binding protein COQ10p and similar proteins

Probab=99.55  E-value=2.5e-13  Score=101.21  Aligned_cols=131  Identities=15%  Similarity=0.133  Sum_probs=90.6

Q ss_pred             EEEEEeCCCHHHHHHHHhccCCcccccccceeEEEecCCCCCCceEEEEeeeecCCCCCCCCCcCccceEEEEEEEEecC
Q 030202           20 ACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLAINAE   99 (181)
Q Consensus        20 v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~G~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~~D~~   99 (181)
                      .+++| +||++.||+++.|++++++|+|++.+++++++.+.  +....+... .+     |  . . ..+..++. +++ 
T Consensus         3 ~s~~i-~ap~~~v~~~i~D~~~~~~~~p~~~~~~vl~~~~~--~~~~~~~~~-~~-----~--~-~-~~~~~~~~-~~~-   67 (138)
T cd07813           3 KSRLV-PYSAEQMFDLVADVERYPEFLPWCTASRVLERDED--ELEAELTVG-FG-----G--I-R-ESFTSRVT-LVP-   67 (138)
T ss_pred             EEEEc-CCCHHHHHHHHHHHHhhhhhcCCccccEEEEcCCC--EEEEEEEEe-ec-----c--c-c-EEEEEEEE-ecC-
Confidence            47788 99999999999999999999999999998875432  222223221 11     1  1 0 13344444 666 


Q ss_pred             CCeEEEEEeecccceeeEEEEEEEEEcCC-ceEEEEEEEEeeCCCCCHHHH-HHHHHHHHHHHHHHHHHHH
Q 030202          100 EMTLTYSIVDGNVGFYGYVSTLTVAPKEN-GCYIEWKYEVEPVKGWRLEDL-DCFISSGLQVMARRMKEAL  168 (181)
Q Consensus       100 ~~~~~y~v~~g~~p~~~~~~t~~v~p~~~-gT~v~W~~~~~p~~~~~~~~~-~~~~~~gl~~l~~~le~~~  168 (181)
                      +.++++...+|  +++.+.++++|+|.++ +|+|+|..+++|..+ .+..+ ..+++..+..+.+.+++++
T Consensus        68 ~~~i~~~~~~g--~~~~~~g~w~~~p~~~~~T~v~~~~~~~~~~~-l~~~l~~~~~~~~~~~~l~~f~~~~  135 (138)
T cd07813          68 PESIEAELVDG--PFKHLEGEWRFKPLGENACKVEFDLEFEFKSR-LLEALAGLVFDEVAKKMVDAFEKRA  135 (138)
T ss_pred             CCEEEEEecCC--ChhhceeEEEEEECCCCCEEEEEEEEEEECCH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66899988877  4567889999999985 699999999998742 22222 3445555666666666554

Coenzyme Q-binding protein COQ10p and similar proteins. COQ10p is a hydrophobic protein located in the inner membrane of mitochondria that binds coenzyme Q (CoQ), also called ubiquinone, which is an essential electron carrier of the respiratory chain. Deletion of the gene encoding COQ10p (COQ10 or YOL008W) in Saccharomyces cerevisiae results in respiratory defect because of the inability to oxidize NADH and succinate. COQ10p may function in the delivery of CoQ (Q6 in budding yeast) to its proper location for electron transport. The human homolog, called Q-binding protein COQ10 homolog A (COQ10A), is able to fully complement for the absence of COQ10p in fission yeast. Human COQ10A also has a splice variant COQ10B. COQ10p belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and the

>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains

Probab=99.55  E-value=5.8e-13  Score=99.28  Aligned_cols=109  Identities=12%  Similarity=0.099  Sum_probs=78.1

Q ss_pred             EEEEEeCCCHHHHHHHHhccCCcccccccceeEEEecCCCCCCceEEEEeeeecCCCCCCCCCcCccceEEEEEEEEecC
Q 030202           20 ACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLAINAE   99 (181)
Q Consensus        20 v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~G~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~~D~~   99 (181)
                      .+++| +||+++||+++.|+.++++|+|. ..+..+++.+ ....++.+..  .+ .   |  .   ....+....++++
T Consensus         3 ~s~~i-~ap~~~V~~~l~D~~~~p~~~p~-~~~~~~~~~~-~~~~~~~~~~--~~-~---g--~---~~~~~~~~~~~~~   68 (142)
T cd08861           3 HSVTV-AAPAEDVYDLLADAERWPEFLPT-VHVERLELDG-GVERLRMWAT--AF-D---G--S---VHTWTSRRVLDPE   68 (142)
T ss_pred             EEEEE-cCCHHHHHHHHHhHHhhhccCCC-ceEEEEEEcC-CEEEEEEEEE--cC-C---C--c---EEEEEEEEEEcCC
Confidence            57888 99999999999999999999998 5555444321 1113443332  01 1   2  1   1222445567777


Q ss_pred             CCeEEEEEeecccceeeEEEEEEEEEcC-CceEEEEEEEEeeCC
Q 030202          100 EMTLTYSIVDGNVGFYGYVSTLTVAPKE-NGCYIEWKYEVEPVK  142 (181)
Q Consensus       100 ~~~~~y~v~~g~~p~~~~~~t~~v~p~~-~gT~v~W~~~~~p~~  142 (181)
                      ++++.|...+++.++..+.++++|+|.+ ++|+|+|..++++..
T Consensus        69 ~~~i~~~~~~~~~~~~~~~g~w~~~~~~~~~t~Vt~~~~~~~~~  112 (142)
T cd08861          69 GRRIVFRQEEPPPPVASMSGEWRFEPLGGGGTRVTLRHDFTLGI  112 (142)
T ss_pred             CCEEEEEEeeCCCChhhheeEEEEEECCCCcEEEEEEEEEEECC
Confidence            8899999887555678889999999998 469999999999763

This family includes the N- and C- terminal aromatase/cyclase (ARO/CYC) domains of Streptomyces rimosus OtcD1 and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, didomain and monodomain. Didomain aromatase/cyclases (ARO/CYCs), contain two ARO/CYC domains, and are associated with C7-C12 first ring cyclized polyketides. Streptomyces rimosus OtcD1 is a didomain ARO/CYC. The polyketide Oxytetracycline (OTC) is a broad spectrum antibiotic made by Streptomyces rimosus. The gene encoding OtcD1 is part of oxytetracycline (OTC) gene cluster. Disruption of this

>cd08860 TcmN_ARO-CYC_like N-terminal aromatase/cyclase domain of the multifunctional protein tetracenomycin (TcmN) and related domains

Probab=99.51  E-value=1.8e-12  Score=98.81  Aligned_cols=134  Identities=9%  Similarity=0.143  Sum_probs=88.3

Q ss_pred             EEEEEEeCCCHHHHHHHHhccCCcccccccceeEEEecCCCCCCceEEEE-eeeecCCCCCCCCCcCccceEEEEEEEEe
Q 030202           19 RACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFC-AGFKTPVDNKDDDHEQSVNWTKQKLLAIN   97 (181)
Q Consensus        19 ~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~G~~~~vGsvR~~-~~~~~~~~g~~G~~~~~~~~~~Erl~~~D   97 (181)
                      .-+++| +|||++||+++.|+.+||+|+|.++.+++++.++.+.|. |.. ..   +. +  |  . ...+..++.  .|
T Consensus         4 ~~si~i-~a~~~~v~~lvaDv~~~P~~~~~~~~~~~l~~~~~~~~~-r~~i~~---~~-~--g--~-~~~w~s~~~--~~   70 (146)
T cd08860           4 DNSIVI-DAPLDLVWDMTNDIATWPDLFSEYAEAEVLEEDGDTVRF-RLTMHP---DA-N--G--T-VWSWVSERT--LD   70 (146)
T ss_pred             eeEEEE-cCCHHHHHHHHHhhhhhhhhccceEEEEEEEecCCeEEE-EEEEEe---cc-C--C--E-EEEEEEEEE--ec
Confidence            458899 999999999999999999999999999987754445553 331 21   11 2  3  1 122333332  56


Q ss_pred             cCCCeEEEEEeecccceeeEEEEEEEEEcCCceEEEEEEEEeeCCCCCH--HHHHHH----HHHHHHHHHHHHHH
Q 030202           98 AEEMTLTYSIVDGNVGFYGYVSTLTVAPKENGCYIEWKYEVEPVKGWRL--EDLDCF----ISSGLQVMARRMKE  166 (181)
Q Consensus        98 ~~~~~~~y~v~~g~~p~~~~~~t~~v~p~~~gT~v~W~~~~~p~~~~~~--~~~~~~----~~~gl~~l~~~le~  166 (181)
                      +..+++.++ .....|+....+.++|+|.++||+|++..+|+...+...  .-+...    +...|++|++.+|+
T Consensus        71 ~~~~~i~~~-~~~~~p~~~m~~~W~f~~~~~gT~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lk~~aE~  144 (146)
T cd08860          71 PVNRTVRAR-RVETGPFAYMNIRWEYTEVPEGTRMRWVQDFEMKPGAPVDDAAMTDRLNTNTRAQMARIKKKIEA  144 (146)
T ss_pred             CCCcEEEEE-EecCCCcceeeeeEEEEECCCCEEEEEEEEEEECCCCccchHHHHHHHhcccHHHHHHHHHHhhh
Confidence            666677764 222246888999999999988999999999996532221  112233    44455555555554

This family includes the N-terminal aromatase/cyclase (ARO/CYC) domain of Streptomyces glaucescens TcmN, and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, monodomain and didomain. Monodomain aromatase/cyclases have a single ARO/CYC domain. For some, such as TcmN, this single domain is linked to a second domain of unrelated function. TcmN is a multifunctional cyclase-dehydratase-O-methyl transferase. Its N-terminal ARO/CYC domain participates in polyketide binding and catalysis; it promotes C9-C14 first-ring (and C7-C16 second-ring) cyclizations.

>cd07812 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily

Probab=99.47  E-value=8.2e-12  Score=89.48  Aligned_cols=134  Identities=16%  Similarity=0.217  Sum_probs=97.3

Q ss_pred             EEEEEEeCCCHHHHHHHHhccCCcccccccceeEEEecCCCCCCceEEEEeeeecCCCCCCCCCcCccceEEEEEEEEec
Q 030202           19 RACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLAINA   98 (181)
Q Consensus        19 ~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~G~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~~D~   98 (181)
                      +.++.| +||+++||+++.|+.++++|+|.+..+....+.....|....+...  +  +  +     ......++..+++
T Consensus         2 ~~~~~i-~a~~~~v~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~--~-----~~~~~~~v~~~~~   69 (141)
T cd07812           2 EASIEI-PAPPEAVWDLLSDPERWPEWSPGLERVEVLGGGEGGVGARFVGGRK--G--G--R-----RLTLTSEVTEVDP   69 (141)
T ss_pred             cEEEEe-CCCHHHHHHHHhChhhhhhhCcccceEEEcCCCCccceeEEEEEec--C--C--c-----cccceEEEEEecC
Confidence            357788 9999999999999999999999999888776555566665555431  0  1  1     1256788888887


Q ss_pred             CCCeEEEEEeecccceeeEEEEEEEEEcCC-ceEEEEEEEEeeCCCC---CHHHHHHHHHHHHHHHHHHHHH
Q 030202           99 EEMTLTYSIVDGNVGFYGYVSTLTVAPKEN-GCYIEWKYEVEPVKGW---RLEDLDCFISSGLQVMARRMKE  166 (181)
Q Consensus        99 ~~~~~~y~v~~g~~p~~~~~~t~~v~p~~~-gT~v~W~~~~~p~~~~---~~~~~~~~~~~gl~~l~~~le~  166 (181)
                       +..++|+...++.+ ..+..++++.+.++ +|+|+|..++.+....   ....+...++..+..+.+.+++
T Consensus        70 -~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~t~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (141)
T cd07812          70 -PRPGRFRVTGGGGG-VDGTGEWRLEPEGDGGTRVTYTVEYDPPGPLLKVFALLLAGALKRELAALLRALKA  139 (141)
T ss_pred             -CCceEEEEecCCCC-cceeEEEEEEECCCCcEEEEEEEEEecCCcchhhhhHHHHHHHHhHHHHHHHHHHh
Confidence             67899998876554 46788999999998 8999999999976432   2233445555555555555544

SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd07824 SRPBCC_6 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=99.46  E-value=4.7e-12  Score=95.61  Aligned_cols=107  Identities=18%  Similarity=0.253  Sum_probs=77.6

Q ss_pred             EEEEEeCCCHHHHHHHHhccCCcccccccceeEEEec-CCCCCCceEEEEeeeecCCCCCCCCCcCccceEEEEEEEEec
Q 030202           20 ACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQ-GISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLAINA   98 (181)
Q Consensus        20 v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~-G~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~~D~   98 (181)
                      -+.+| +||+++||++++|+.++++|+|.+.++..++ +.+.++|+.......  . ..  |  .  ...++-+++.+++
T Consensus         5 ~~~~i-~ap~e~Vw~~~tD~~~~~~w~~~v~~~~~~~~~~~~~~g~~~~~~~~--~-~~--~--~--~~~~~~~v~~~~p   74 (146)
T cd07824           5 TVWRI-PAPPEAVWDVLVDAESWPDWWPGVERVVELEPGDEAGIGARRRYTWR--G-LL--P--Y--RLRFELRVTRIEP   74 (146)
T ss_pred             EEEEe-cCCHHHHHHHHhChhhcchhhhceEEEEEccCCCCCCcceEEEEEEE--e-cC--C--c--EEEEEEEEEeecC
Confidence            35678 9999999999999999999999999988876 345567765433211  0 01  1  1  0145566677766


Q ss_pred             CCCeEEEEEeecccceeeEEEEEEEEEcCCceEEEEEEEEeeC
Q 030202           99 EEMTLTYSIVDGNVGFYGYVSTLTVAPKENGCYIEWKYEVEPV  141 (181)
Q Consensus        99 ~~~~~~y~v~~g~~p~~~~~~t~~v~p~~~gT~v~W~~~~~p~  141 (181)
                       ++.++|+. .|+  +. ...+++|+|.++||+|+++.++++.
T Consensus        75 -~~~~~~~~-~g~--~~-~~~~~~~~~~~~gt~vt~~~~~~~~  112 (146)
T cd07824          75 -LSLLEVRA-SGD--LE-GVGRWTLAPDGSGTVVRYDWEVRTT  112 (146)
T ss_pred             -CcEEEEEE-EEe--ee-EEEEEEEEEcCCCEEEEEEEEEEcC
Confidence             67899985 453  33 3688999998889999999999853

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=99.44  E-value=1e-11  Score=91.67  Aligned_cols=104  Identities=16%  Similarity=0.270  Sum_probs=76.6

Q ss_pred             EEEEEEeCCCHHHHHHHHhccCCcccccccceeEEEecCCCCCCceEEEEeeeecCCCCCCCCCcCccceEEEEEEEEec
Q 030202           19 RACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLAINA   98 (181)
Q Consensus        19 ~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~G~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~~D~   98 (181)
                      +.+++| +||+++||+++.|+.++++|+|.+.+++...+.    +....+..   | .   |   ... ....+++.+++
T Consensus         3 ~~~i~I-~ap~e~V~~~~~D~~~~~~w~~~~~~~~~~~~~----~~~~~~~~---~-~---g---~~~-~~~~~v~~~~~   66 (139)
T cd07817           3 EKSITV-NVPVEEVYDFWRDFENLPRFMSHVESVEQLDDT----RSHWKAKG---P-A---G---LSV-EWDAEITEQVP   66 (139)
T ss_pred             eEEEEe-CCCHHHHHHHHhChhhhHHHhhhhcEEEEcCCC----ceEEEEec---C-C---C---CcE-EEEEEEeccCC
Confidence            357889 999999999999999999999999888876441    22222222   2 1   2   112 45666777776


Q ss_pred             CCCeEEEEEeecccceeeEEEEEEEEEcCC-ceEEEEEEEEeeCC
Q 030202           99 EEMTLTYSIVDGNVGFYGYVSTLTVAPKEN-GCYIEWKYEVEPVK  142 (181)
Q Consensus        99 ~~~~~~y~v~~g~~p~~~~~~t~~v~p~~~-gT~v~W~~~~~p~~  142 (181)
                       ++.+.|....+.+   .+.++++|+|.++ +|+|++++.++|..
T Consensus        67 -~~~i~~~~~~~~~---~~~~~~~f~~~~~~~T~vt~~~~~~~~~  107 (139)
T cd07817          67 -NERIAWRSVEGAD---PNAGSVRFRPAPGRGTRVTLTIEYEPPG  107 (139)
T ss_pred             -CCEEEEEECCCCC---CcceEEEEEECCCCCeEEEEEEEEECCc
Confidence             5679998776543   5678999999876 79999999999764

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd07814 SRPBCC_CalC_Aha1-like Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins

Probab=99.44  E-value=4.2e-12  Score=93.65  Aligned_cols=134  Identities=19%  Similarity=0.188  Sum_probs=88.5

Q ss_pred             EEEEEEeCCCHHHHHHHHhccCCcccccccceeEEEecCCCCCCceEEEEeeeecCCCCCCCCCcCccceEEEEEEEEec
Q 030202           19 RACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLAINA   98 (181)
Q Consensus        19 ~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~G~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~~D~   98 (181)
                      ..+++| +||+++||+++.|+.++++|+|.+..+..... .|  |+.+.+..   ...|  +     ...+..+++.+++
T Consensus         3 ~~s~~I-~a~~~~Vw~~l~d~~~~~~w~~~~~~~~~~~~-~G--g~~~~~~~---~~~g--~-----~~~~~~~i~~~~~   68 (139)
T cd07814           3 TIEREF-DAPPELVWRALTDPELLAQWFGPTTTAEMDLR-VG--GRWFFFMT---GPDG--E-----EGWVSGEVLEVEP   68 (139)
T ss_pred             EEEEEe-cCCHHHHHHHcCCHHHHHhhhCcCCceEEccc-CC--ceEEEEEE---CCCC--C-----EEeccEEEEEEcC
Confidence            357889 99999999999999999999996322222111 11  56665543   1111  1     1257889999997


Q ss_pred             CCCeEEEEEeeccc-ceeeEEEEEEEEEcCCceEEEEEEEEeeCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 030202           99 EEMTLTYSIVDGNV-GFYGYVSTLTVAPKENGCYIEWKYEVEPVKGWRLEDLDCFISSGLQVMARRMKEAL  168 (181)
Q Consensus        99 ~~~~~~y~v~~g~~-p~~~~~~t~~v~p~~~gT~v~W~~~~~p~~~~~~~~~~~~~~~gl~~l~~~le~~~  168 (181)
                       ++.+.|+...+.. +......+++|.|.+++|+|+|+.++.+.... ...+...+..+.+.+...|++++
T Consensus        69 -~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~T~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~lk~~~  137 (139)
T cd07814          69 -PRRLVFTWAFSDETPGPETTVTVTLEETGGGTRLTLTHSGFPEEDA-EQEAREGMEEGWTGTLDRLKALL  137 (139)
T ss_pred             -CCeEEEEecccCCCCCCceEEEEEEEECCCCEEEEEEEEccChHhH-HHHHHhCHhhHHHHHHHHHHHHh
Confidence             5789999887643 34456888999999988999999998875321 22223334444444444554444

This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Micromonospora echinospora CalC, human Aha1, and related proteins. Proteins in this group belong to the SRPBCC domain superfamily of proteins, which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM), by a self sacrificing mechanism which results in inactivation of both CalC and the highly reactive diradical enediyne species. MeCalC can also inactivate two other enediynes, shishijimicin and namenamicin. A crucial Gly of the MeCalC CLM resistance mechanism is not conserved in this subgroup. This family also includes the C-terminal, Bet v1-like domain of Aha1, one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Aha1 promotes dimer

>cd07825 SRPBCC_7 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=99.41  E-value=1.2e-11  Score=92.24  Aligned_cols=111  Identities=14%  Similarity=0.013  Sum_probs=77.1

Q ss_pred             EEEEEEeCCCHHHHHHHHhccCCcccccccceeEEEecC-CCCCCceEEEEeeeecCCCCCCCCCcCccceEEEEEEEEe
Q 030202           19 RACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQG-ISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLAIN   97 (181)
Q Consensus        19 ~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~G-~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~~D   97 (181)
                      ..+++| +||+++||+++.|+.++++|+|.........+ ..-++|....+... .+  |  +   .  ..+..+++.++
T Consensus         3 ~~~~~i-~ap~e~Vw~~l~d~~~~~~W~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~--g--~---~--~~~~~~v~~~~   71 (144)
T cd07825           3 SVSRTV-DAPAEAVFAVLADPRRHPEIDGSGTVREAIDGPRILAVGDVFRMAMR-LD--G--G---P--YRITNHVVAFE   71 (144)
T ss_pred             EEEEEE-eCCHHHHHHHHhCccccceeCCCCccccccCCCccCCCCCEEEEEEE-cC--C--C---c--eEEEEEEEEEC
Confidence            578899 99999999999999999999985332222222 23467876655542 11  2  2   1  25667789998


Q ss_pred             cCCCeEEEEEeecccceeeEEEEEEEEEcCC-ceEEEEEEEEeeC
Q 030202           98 AEEMTLTYSIVDGNVGFYGYVSTLTVAPKEN-GCYIEWKYEVEPV  141 (181)
Q Consensus        98 ~~~~~~~y~v~~g~~p~~~~~~t~~v~p~~~-gT~v~W~~~~~p~  141 (181)
                      + +++++|+......+......+++|++.++ +|+|+++..|...
T Consensus        72 p-~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~T~vt~~~~~~g~  115 (144)
T cd07825          72 E-NRLIAWRPGPAGQEPGGHRWRWELEPIGPGRTRVTETYDWSAV  115 (144)
T ss_pred             C-CCEEEEEccCCCCCCCceeEEEEEEECCCCcEEEEEEEeccCC
Confidence            8 67899986522223344567889999885 6999999998854

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG)

Probab=99.38  E-value=2.8e-11  Score=89.72  Aligned_cols=109  Identities=16%  Similarity=0.134  Sum_probs=74.3

Q ss_pred             EEEEEEeCCCHHHHHHHHhccCCcccccccceeEEEecCCCCCCceEEEEeeeecCCCCCCCCCcCccceEEEEEEEEec
Q 030202           19 RACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLAINA   98 (181)
Q Consensus        19 ~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~G~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~~D~   98 (181)
                      +.+++| ++|+++||+++.|++++++|+|.+.+++.+++..  ......+..  .| .+  +    . -...-+++.+++
T Consensus         4 ~~~~~i-~a~~e~v~~~l~D~~~~~~w~p~~~~~~~~~~~~--~~~~~~~~~--~~-~~--~----~-~~~~~~~~~~~~   70 (144)
T cd05018           4 SGEFRI-PAPPEEVWAALNDPEVLARCIPGCESLEKIGPNE--YEATVKLKV--GP-VK--G----T-FKGKVELSDLDP   70 (144)
T ss_pred             eeEEEe-cCCHHHHHHHhcCHHHHHhhccchhhccccCCCe--EEEEEEEEE--cc-EE--E----E-EEEEEEEEecCC
Confidence            467889 9999999999999999999999998877654321  111111111  01 00  0    0 022456666665


Q ss_pred             CCCeEEEEEeec-ccceeeEEEEEEEEEcCCceEEEEEEEEeeC
Q 030202           99 EEMTLTYSIVDG-NVGFYGYVSTLTVAPKENGCYIEWKYEVEPV  141 (181)
Q Consensus        99 ~~~~~~y~v~~g-~~p~~~~~~t~~v~p~~~gT~v~W~~~~~p~  141 (181)
                       ++.+.++.... ......+..+++|+|.++||+|+|+.++++.
T Consensus        71 -~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~gT~v~~~~~~~~~  113 (144)
T cd05018          71 -PESYTITGEGKGGAGFVKGTARVTLEPDGGGTRLTYTADAQVG  113 (144)
T ss_pred             -CcEEEEEEEEcCCCceEEEEEEEEEEecCCcEEEEEEEEEEEc
Confidence             46777776542 2235578999999999778999999999975

CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>cd07820 SRPBCC_3 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=99.37  E-value=6.5e-11  Score=88.41  Aligned_cols=108  Identities=10%  Similarity=0.028  Sum_probs=81.2

Q ss_pred             EEEEEeCCCHHHHHHHHhccCCcccccccceeEEEecCCC--CCCceEEEEeeeecCCCCCCCCCcCccceEEEEEEEEe
Q 030202           20 ACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGIS--GQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLAIN   97 (181)
Q Consensus        20 v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~G~~--~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~~D   97 (181)
                      .+++| +||+++||+++.|..++++|+|.+.+++++...+  -.+|+.-.+...  +  .  |  . .. ..+-+++.++
T Consensus         3 ~s~~I-~ap~e~V~~~~~d~~~~~~~~p~~~~v~~~~~~~~~~~~G~~~~~~~~--~--~--~--~-~~-~w~~~it~~~   71 (137)
T cd07820           3 RSTVI-PAPIEEVFDFHSRPDNLERLTPPWLEFAVLGRTPGLIYGGARVTYRLR--H--F--G--I-PQ-RWTTEITEVE   71 (137)
T ss_pred             EEEEc-CCCHHHHHHHHcCcchHHhcCCCCCCeEEEecCCCcccCCcEEEEEEE--e--c--C--C-ce-EEEEEEEEEc
Confidence            57788 9999999999999999999999988887764222  244665555442  1  1  1  1 12 3466778888


Q ss_pred             cCCCeEEEEEeecccceeeEEEEEEEEEcCCceEEEEEEEEeeC
Q 030202           98 AEEMTLTYSIVDGNVGFYGYVSTLTVAPKENGCYIEWKYEVEPV  141 (181)
Q Consensus        98 ~~~~~~~y~v~~g~~p~~~~~~t~~v~p~~~gT~v~W~~~~~p~  141 (181)
                      + ++.++++...|+  +..+..++.+.|.++||+|+++.+|++.
T Consensus        72 p-~~~f~~~~~~G~--~~~w~h~~~f~~~~~gT~vt~~v~~~~p  112 (137)
T cd07820          72 P-PRRFVDEQVSGP--FRSWRHTHRFEAIGGGTLMTDRVEYRLP  112 (137)
T ss_pred             C-CCeEEEEeccCC--chhCEEEEEEEECCCceEEEEEEEEeCC
Confidence            6 678999988764  4557778899998889999999999974

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>PRK10724 hypothetical protein; Provisional

Probab=99.27  E-value=1.6e-10  Score=89.30  Aligned_cols=134  Identities=13%  Similarity=0.175  Sum_probs=92.0

Q ss_pred             EEEEEEeCCCHHHHHHHHhccCCcccccccceeEEEecCCCCCCceEEEEeeeecCCCCCCCCCcCccceEEEEEEEEec
Q 030202           19 RACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLAINA   98 (181)
Q Consensus        19 ~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~G~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~~D~   98 (181)
                      +.++.| ++|++++|+++.|.+++|+|+|.+..+++++-.+++  ....+...    -+  |  .  ......+.. +++
T Consensus        18 ~~~~~v-~~s~~~v~~lv~Dve~yp~flp~~~~s~vl~~~~~~--~~a~l~v~----~~--g--~--~~~f~srv~-~~~   83 (158)
T PRK10724         18 SRTALV-PYSAEQMYQLVNDVQSYPQFLPGCTGSRVLESTPGQ--MTAAVDVS----KA--G--I--SKTFTTRNQ-LTS   83 (158)
T ss_pred             EEEEEe-cCCHHHHHHHHHHHHHHHHhCcccCeEEEEEecCCE--EEEEEEEe----eC--C--c--cEEEEEEEE-ecC
Confidence            456778 999999999999999999999999999887633322  12222210    01  2  1  113444444 344


Q ss_pred             CCCeEEEEEeecccceeeEEEEEEEEEcCC-ceEEEEEEEEeeCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 030202           99 EEMTLTYSIVDGNVGFYGYVSTLTVAPKEN-GCYIEWKYEVEPVKGWRLEDLDCFISSGLQVMARRMKEALQ  169 (181)
Q Consensus        99 ~~~~~~y~v~~g~~p~~~~~~t~~v~p~~~-gT~v~W~~~~~p~~~~~~~~~~~~~~~gl~~l~~~le~~~~  169 (181)
                       ++++.+.+++|  |++.+.+.++|.|.++ +|+|++..+|+.........+..+++.....|.+.+++++.
T Consensus        84 -~~~I~~~~~~G--pF~~l~g~W~f~p~~~~~t~V~~~l~fef~s~l~~~~~~~~~~~~~~~mv~AF~~Ra~  152 (158)
T PRK10724         84 -NQSILMQLVDG--PFKKLIGGWKFTPLSQEACRIEFHLDFEFTNKLIELAFGRVFKELASNMVQAFTVRAK  152 (158)
T ss_pred             -CCEEEEEecCC--ChhhccceEEEEECCCCCEEEEEEEEEEEchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             45899999988  4788999999999885 69999999999653222222345566666777777776653

>PF03364 Polyketide_cyc: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR005031 Members of this family of enzymes from Streptomyces spp

Probab=99.21  E-value=7.2e-10  Score=81.38  Aligned_cols=122  Identities=16%  Similarity=0.253  Sum_probs=76.8

Q ss_pred             eCCCHHHHHHHHhccCCcccccccceeEEEecCCCCCCceEEE-EeeeecCCCCCCCCCcCccceEEEEEEEEecCCCeE
Q 030202           25 TGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRF-CAGFKTPVDNKDDDHEQSVNWTKQKLLAINAEEMTL  103 (181)
Q Consensus        25 ~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~G~~~~vGsvR~-~~~~~~~~~g~~G~~~~~~~~~~Erl~~~D~~~~~~  103 (181)
                      ++||+++||+++.|++++++|+|.+.++++++..++  + ++. +...    .+  +   ... ....++....+ .. +
T Consensus         1 V~ap~~~V~~~i~D~e~~~~~~p~~~~v~vl~~~~~--~-~~~~~~~~----~~--~---~~~-~~~~~~~~~~~-~~-~   65 (130)
T PF03364_consen    1 VNAPPEEVWSVITDYENYPRFFPPVKEVRVLERDGD--G-MRARWEVK----FG--G---IKR-SWTSRVTEDPP-ER-I   65 (130)
T ss_dssp             ESS-HHHHHHHHTTGGGHHHHCTTEEEEEEEEEECC--E-EEEEEEEC----TT--T---TCE-EEEEEEEEECT-TT-E
T ss_pred             CCCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCC--e-EEEEEEEe----cC--C---EEE-EEEEEEEEEEe-ee-e
Confidence            399999999999999999999999999998875433  2 222 2221    11  1   112 34555554443 33 7


Q ss_pred             EEEEeecccceeeEEEEEEEEEcCC---ceEEEEEEEEe--eCCCCCHHHH-HHHHHHHHHHHHHHH
Q 030202          104 TYSIVDGNVGFYGYVSTLTVAPKEN---GCYIEWKYEVE--PVKGWRLEDL-DCFISSGLQVMARRM  164 (181)
Q Consensus       104 ~y~v~~g~~p~~~~~~t~~v~p~~~---gT~v~W~~~~~--p~~~~~~~~~-~~~~~~gl~~l~~~l  164 (181)
                      .+....|  +++.+.+++++.|.++   ||++..++++.  |.. ..+..+ +.+++..+..+.+.|
T Consensus        66 ~~~~~~g--~~~~~~g~W~~~~~~~~~~g~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  129 (130)
T PF03364_consen   66 RFEQISG--PFKSFEGSWRFEPLGGNEGGTRTRVTYDYEVDPPG-PLPGFLARQFFRRDLRQMLEAF  129 (130)
T ss_dssp             EEESSET--TEEEEEEEEEEEEETTECCEEEEEEEEEEEEETSS-SSHHHHHHHHHHHHHHHHHHHH
T ss_pred             eeeecCC--CchhcEEEEEEEECCCCcCCCEEEEEEEEEEecCc-HhHHHHHHHHHHHHHHHHHHhh
Confidence            7777766  4688999999999986   76555555554  442 333333 344555555555544

are involved in polyketide (linear poly-beta-ketones) synthesis.; PDB: 1T17_A 3GGN_B 2KCZ_A 2D4R_B 2REZ_A 2RES_A 3TVQ_A 2RER_A 2KF2_A 3TL1_A ....

>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=99.20  E-value=1.1e-09  Score=82.53  Aligned_cols=135  Identities=11%  Similarity=0.071  Sum_probs=78.2

Q ss_pred             EEEEeCCCHHHHHHHHhccCCcccccccceeEEEecCCCCCCceEEEEeeeecCCCCCCCCCcCccceEEEEEEEEecCC
Q 030202           21 CEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLAINAEE  100 (181)
Q Consensus        21 ~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~G~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~~D~~~  100 (181)
                      +++| +||+++||++|.|+.+++.|+|++.+.+...+  +.....-.+..      +  +  ....-..+=+++.+++.+
T Consensus         4 ~~~v-~a~pe~vw~~l~D~~~~~~~~pg~~~~~~~~~--~~~~~~~~~~~------g--~--~~~~~~~~~~~~~~~~~~   70 (146)
T cd07823           4 EFTV-PAPPDRVWALLLDIERVAPCLPGASLTEVEGD--DEYKGTVKVKL------G--P--ISASFKGTARLLEDDEAA   70 (146)
T ss_pred             eEEe-cCCHHHHHHHhcCHHHHHhcCCCceeccccCC--CeEEEEEEEEE------c--c--EEEEEEEEEEEEeccCCC
Confidence            5778 99999999999999999999998876665332  11111111111      1  0  000001122566666357


Q ss_pred             CeEEEEEeeccc---ceeeEEEEEEEEEcCCceEEEEEEEEeeC---CCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 030202          101 MTLTYSIVDGNV---GFYGYVSTLTVAPKENGCYIEWKYEVEPV---KGWRLEDLDCFISSGLQVMARRMKEAL  168 (181)
Q Consensus       101 ~~~~y~v~~g~~---p~~~~~~t~~v~p~~~gT~v~W~~~~~p~---~~~~~~~~~~~~~~gl~~l~~~le~~~  168 (181)
                      +.+.+.....+.   +--....+++|.|.++||+|+|..+++..   .......+....+..++.+.+.|++++
T Consensus        71 ~~~~~~~~g~~~~~~g~~~~~~~~~l~~~~~gT~v~~~~~~~~~g~l~~l~~~~v~~~~~~~~~~~~~~l~~~~  144 (146)
T cd07823          71 RRAVLEATGKDARGQGTAEATVTLRLSPAGGGTRVTVDTDLALTGKLAQFGRGGIGDVAGRLLAQFAANLEARL  144 (146)
T ss_pred             cEEEEEEEEecCCCcceEEEEEEEEEEecCCcEEEEEEEEEEEeeEhHHhChhHHHHHHHHHHHHHHHHHHHHh
Confidence            788887554211   11135668888886678999999988743   222222233444545555555555544

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd08898 SRPBCC_CalC_Aha1-like_5 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=99.12  E-value=2.8e-09  Score=79.28  Aligned_cols=133  Identities=11%  Similarity=0.149  Sum_probs=83.2

Q ss_pred             EEEEEEeCCCHHHHHHHHhccCCcccccccceeEEEecCCCCCCceEEEEeeeecCCCCCCCCCcCccceEEEEEEEEec
Q 030202           19 RACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLAINA   98 (181)
Q Consensus        19 ~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~G~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~~D~   98 (181)
                      ..+++| +||+++||+++.|...+++|++... +....+ .+..|.   +..   +  +  +   . .....-+++.+++
T Consensus         4 ~~~i~i-~a~~e~Vw~~~td~~~~~~W~~~~~-~~~~~~-~~~~g~---~~~---~--~--~---~-~~~~~~~i~~~~p   66 (145)
T cd08898           4 ERTILI-DAPRERVWRALTDPEHFGQWFGVKL-GPFVVG-EGATGE---ITY---P--G--Y---E-HGVFPVTVVEVDP   66 (145)
T ss_pred             EEEEEe-cCCHHHHHHHhcChhhhhhcccccC-CCcccC-CcceeE---Eec---C--C--C---C-ccceEEEEEEeCC
Confidence            357889 9999999999999999999998543 211111 111122   221   1  1  0   0 0145678888987


Q ss_pred             CCCeEEEEEeecc----c---ceeeEEEEEEEEEcCCceEEEEEEE-EeeCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 030202           99 EEMTLTYSIVDGN----V---GFYGYVSTLTVAPKENGCYIEWKYE-VEPVKGWRLEDLDCFISSGLQVMARRMKEALQ  169 (181)
Q Consensus        99 ~~~~~~y~v~~g~----~---p~~~~~~t~~v~p~~~gT~v~W~~~-~~p~~~~~~~~~~~~~~~gl~~l~~~le~~~~  169 (181)
                       ++.++|+.....    .   +......+++|.+.++||+|+++.. +........+........|.+.+...|++++.
T Consensus        67 -~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gT~vt~~~~~~~~~~~~~~~~~~~~~~~gw~~~l~~L~~~le  144 (145)
T cd08898          67 -PRRFSFRWHPPAIDPGEDYSAEPSTLVEFTLEPIAGGTLLTVTESGFDALPAERRAEAYRMNEGGWDEQLENLVAYVE  144 (145)
T ss_pred             -CcEEEEEecCCCcccccccCCCCceEEEEEEEecCCcEEEEEEEcCCCCCChHHHHHHHHhhhhhHHHHHHHHHHHhc
Confidence             678888865432    1   1223567899999988999999865 43321111122334566777777777777764

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>cd08893 SRPBCC_CalC_Aha1-like_GntR-HTH Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins; some contain an N-terminal GntR family winged HTH DNA-binding domain

Probab=98.94  E-value=3e-08  Score=72.86  Aligned_cols=128  Identities=13%  Similarity=0.062  Sum_probs=79.0

Q ss_pred             EEEEEEeCCCHHHHHHHHhccCCcccccccceeEEEecCCCCCCc-eEEEEeeeecCCCCCCCCCcCccceEEEEEEEEe
Q 030202           19 RACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPG-CVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLAIN   97 (181)
Q Consensus        19 ~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~G~~~~vG-svR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~~D   97 (181)
                      ..+++| +||+++||+++.|...+++|++... +   ..+ -.+| ..+....   . .+        ...+.-++++++
T Consensus         3 ~~~~~i-~ap~e~Vw~~~td~~~~~~W~~~~~-~---~~~-~~~G~~~~~~~~---~-~~--------~~~~~~~v~~~~   64 (136)
T cd08893           3 VYVTYI-RATPEKVWQALTDPEFTRQYWGGTT-V---ESD-WKVGSAFEYRRG---D-DG--------TVDVEGEVLESD   64 (136)
T ss_pred             EEEEEe-cCCHHHHHHHHcCchhhhheecccc-c---ccC-CcCCCeEEEEeC---C-Cc--------ccccceEEEEec
Confidence            357888 9999999999999999999998622 1   111 1234 3333221   0 00        013455677787


Q ss_pred             cCCCeEEEEEeeccc----ceeeEEEEEEEEEcCCceEEEEEEEEeeCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 030202           98 AEEMTLTYSIVDGNV----GFYGYVSTLTVAPKENGCYIEWKYEVEPVKGWRLEDLDCFISSGLQVMARRMKEALQ  169 (181)
Q Consensus        98 ~~~~~~~y~v~~g~~----p~~~~~~t~~v~p~~~gT~v~W~~~~~p~~~~~~~~~~~~~~~gl~~l~~~le~~~~  169 (181)
                      + ++.++|+...+..    +......++.|++.+++|+++.+....+...    .+....+.|.+.+.+.|+++++
T Consensus        65 ~-~~~l~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~t~l~~~~~~~~~~~----~~~~~~~~gw~~~l~~Lk~~~e  135 (136)
T cd08893          65 P-PRRLVHTWRAVWDPEMAAEPPSRVTFEIEPVGDVVKLTVTHDGFPPGS----PTLEGVSGGWPAILSSLKTLLE  135 (136)
T ss_pred             C-CCeEEEEEecCCCcccCCCCCEEEEEEEEecCCcEEEEEEecCCCCch----hHHHhhhcCHHHHHHHHHHHhc
Confidence            6 6677777653222    1235677899999888899888877644321    2233455556666666666553

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. Some proteins in this subgroup contain an N-terminal winged helix-turn-helix DNA-binding domain found in the GntR family of proteins which include bacterial transcriptional regulators and their putative homologs from eukaryota and archaea.

>cd08899 SRPBCC_CalC_Aha1-like_6 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=98.89  E-value=3.3e-08  Score=75.73  Aligned_cols=125  Identities=18%  Similarity=0.167  Sum_probs=81.1

Q ss_pred             eEEEEEEeCCCHHHHHHHHhccCCcccccccceeEEEecCCCCCCceEEEEeeeecCCCCCCCCCcCccceEEEEEEEEe
Q 030202           18 GRACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLAIN   97 (181)
Q Consensus        18 ~~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~G~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~~D   97 (181)
                      =.++++| +||+++||+++.|+.++++|+|.. ..      .-.+|....+...  + .+  +      .....++++++
T Consensus        13 i~~~~~i-~Ap~e~Vw~altdp~~~~~W~~~~-~~------~~~~G~~~~~~~~--~-~~--~------~~~~~~v~e~~   73 (157)
T cd08899          13 LRFERLL-PAPIEDVWAALTDPERLARWFAPG-TG------DLRVGGRVEFVMD--D-EE--G------PNATGTILACE   73 (157)
T ss_pred             EEEEEec-CCCHHHHHHHHcCHHHHHhhcCCC-CC------CcccCceEEEEec--C-CC--C------CccceEEEEEc
Confidence            4568888 999999999999999999999932 11      1124433333321  1 01  0      14567888998


Q ss_pred             cCCCeEEEEEeecccceeeEEEEEEEEEcCCceEEEEEEEEeeCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 030202           98 AEEMTLTYSIVDGNVGFYGYVSTLTVAPKENGCYIEWKYEVEPVKGWRLEDLDCFISSGLQVMARRMKEALQA  170 (181)
Q Consensus        98 ~~~~~~~y~v~~g~~p~~~~~~t~~v~p~~~gT~v~W~~~~~p~~~~~~~~~~~~~~~gl~~l~~~le~~~~~  170 (181)
                      + ++.+.|+...+.   .....+++|++.++||+|+.+.++.+..     ........|.+.+...|++++..
T Consensus        74 p-~~~l~~~~~~~~---~~~~~~~~l~~~~~gT~v~~~~~~~~~~-----~~~~~~~~GW~~~L~~Lk~~~e~  137 (157)
T cd08899          74 P-PRLLAFTWGEGG---GESEVRFELAPEGDGTRLTLTHRLLDER-----FGAGAVGAGWHLCLDVLEAALEG  137 (157)
T ss_pred             C-CcEEEEEecCCC---CCceEEEEEEEcCCCEEEEEEEeccCch-----hhhhhhcccHHHHHHHHHHHHcC
Confidence            7 578888876543   2346688899888889999998887643     12233444555555555555543

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>cd08894 SRPBCC_CalC_Aha1-like_1 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=98.74  E-value=5.4e-07  Score=67.33  Aligned_cols=134  Identities=17%  Similarity=0.172  Sum_probs=79.3

Q ss_pred             EEEEEEeCCCHHHHHHHHhccCCcccccc-cceeEEEecCCCCCCc-eEEEEeeeecCCCCCCCCCcCccceEEEEEEEE
Q 030202           19 RACEELTGVKAEQIWAFLEDFFGLDKWFP-TLTTCIPIQGISGQPG-CVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLAI   96 (181)
Q Consensus        19 ~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P-~v~~~~~~~G~~~~vG-svR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~~   96 (181)
                      .++.+| +||+++||+++.|-..+.+|++ .-..+.....+ ..+| .-|....  .| +   |  .  .-...-+++++
T Consensus         3 ~~~r~i-~ap~e~Vw~a~t~p~~l~~W~~p~~~~~~~~~~d-~~~GG~~~~~~~--~~-~---g--~--~~~~~g~v~e~   70 (139)
T cd08894           3 VTTRVI-DAPRDLVFAAWTDPEHLAQWWGPEGFTNTTHEFD-LRPGGRWRFVMH--GP-D---G--T--DYPNRIVFLEI   70 (139)
T ss_pred             EEEEEe-CCCHHHHHHHhCCHHHHhhccCcCCCcceEEEEE-ecCCCEEEEEEE--CC-C---C--C--EecceEEEEEE
Confidence            467889 9999999999999999999984 21112111111 1233 3333221  12 2   2  1  01234678999


Q ss_pred             ecCCCeEEEEEeecccceeeEEEEEEEEEcCCceEEEEEEEEeeCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 030202           97 NAEEMTLTYSIVDGNVGFYGYVSTLTVAPKENGCYIEWKYEVEPVKGWRLEDLDCFISSGLQVMARRMKEALQ  169 (181)
Q Consensus        97 D~~~~~~~y~v~~g~~p~~~~~~t~~v~p~~~gT~v~W~~~~~p~~~~~~~~~~~~~~~gl~~l~~~le~~~~  169 (181)
                      ++ ++++.|+....  +. ....+++|+|.++||+|+.+..+.+.. .....+......|...+...|++++.
T Consensus        71 ~p-~~~l~~t~~~~--~~-~~~v~~~~~~~~~gT~ltl~~~~~~~~-~~~~~~~~~~~~Gw~~~l~~L~~~l~  138 (139)
T cd08894          71 EP-PERIVYDHGSG--PP-RFRLTVTFEEQGGKTRLTWRQVFPTAA-ERCEKIKFGAVEGNEQTLDRLAAYLA  138 (139)
T ss_pred             cC-CCEEEEEeccC--CC-cEEEEEEEEECCCCEEEEEEEEcCCHH-HHHHHHHhCHHHHHHHHHHHHHHHHh
Confidence            88 67888886543  21 245789999988889999987654321 10111123355666666666666653

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>cd08897 SRPBCC_CalC_Aha1-like_4 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=98.73  E-value=5.1e-07  Score=66.98  Aligned_cols=127  Identities=12%  Similarity=0.165  Sum_probs=76.4

Q ss_pred             EEEEEEeCCCHHHHHHHHhccCCccccccccee--EEEecCCCCCCc-eEEEEeeeecCCCCCCCCCcCccceEEEEEEE
Q 030202           19 RACEELTGVKAEQIWAFLEDFFGLDKWFPTLTT--CIPIQGISGQPG-CVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLA   95 (181)
Q Consensus        19 ~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~--~~~~~G~~~~vG-svR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~   95 (181)
                      .+++.| +||+++||+++.|-..+.+|++....  +...+.+ -.+| ..+....  .+ +|  +   . ...+.-++++
T Consensus         3 ~~~~~~-~ap~e~Vw~a~td~e~~~~W~~~~~~~~~~~~~~d-~~~GG~~~~~~~--~~-~g--~---~-~~~~~g~~~e   71 (133)
T cd08897           3 TVETTV-DAPIEKVWEAWTTPEHITKWNFASDDWHCPSAEND-LRVGGKFSYRME--AK-DG--S---M-GFDFEGTYTE   71 (133)
T ss_pred             EEEEEe-CCCHHHHHHHhCCHHHHhhCCCCCCCcccceeeec-CCcCCEEEEEEE--cC-CC--C---c-ccccceEEEE
Confidence            467889 99999999999999999999643211  1111111 1234 3333321  11 22  1   0 0134567888


Q ss_pred             EecCCCeEEEEEeecccceeeEEEEEEEEEcCCceEEEEEEEEeeCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 030202           96 INAEEMTLTYSIVDGNVGFYGYVSTLTVAPKENGCYIEWKYEVEPVKGWRLEDLDCFISSGLQVMARRMKEALQ  169 (181)
Q Consensus        96 ~D~~~~~~~y~v~~g~~p~~~~~~t~~v~p~~~gT~v~W~~~~~p~~~~~~~~~~~~~~~gl~~l~~~le~~~~  169 (181)
                      +++ ++++.|+...+      ...+++|+|.++||+++-+  +.+......+    ....|...+...|+++++
T Consensus        72 i~p-~~~l~~~~~~~------~~v~~~l~~~~~gT~l~l~--~~~~~~~~~~----~~~~GW~~~l~~L~~~le  132 (133)
T cd08897          72 VEP-HKLIEYTMEDG------REVEVEFTEEGDGTKVVET--FDAENENPVE----MQRQGWQAILDNFKKYVE  132 (133)
T ss_pred             ECC-CCEEEEEcCCC------CEEEEEEEECCCCEEEEEE--ECCCCCCcHH----HHHHHHHHHHHHHHHHhh
Confidence            887 68999986432      3678999998888999875  4443222222    345555666666666653

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family

Probab=98.73  E-value=2.4e-06  Score=67.20  Aligned_cols=141  Identities=13%  Similarity=0.166  Sum_probs=84.7

Q ss_pred             eeEEEEEEeCCCHHHHHHHHhccCCcccccccceeEEEecCCCC-CCceEEEEeeeecCCCCCCCCCcCccceEEEEEEE
Q 030202           17 QGRACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISG-QPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLA   95 (181)
Q Consensus        17 ~~~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~G~~~-~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~   95 (181)
                      .=+++.+| ++|+++||+++.|.+.+++|.|.+..+.+++..+. .......+.. ..|..+  .      ..+..+-..
T Consensus        42 ~~k~~~~i-~~s~e~v~~vi~d~e~~~~w~~~~~~~~vie~~~~~~~i~~~~~~~-p~pvs~--R------dfv~~~~~~  111 (195)
T cd08876          42 EFKAVAEV-DASIEAFLALLRDTESYPQWMPNCKESRVLKRTDDNERSVYTVIDL-PWPVKD--R------DMVLRSTTE  111 (195)
T ss_pred             EEEEEEEE-eCCHHHHHHHHhhhHhHHHHHhhcceEEEeecCCCCcEEEEEEEec-ccccCC--c------eEEEEEEEE
Confidence            34567778 99999999999999999999999999988763222 2222222221 011111  0      122222222


Q ss_pred             EecCCCeEEEEEeecc--cc-------eeeEEEEEEEEEcCC-ceEEEEEEEEeeCCCCCHHHH-HHHHHHHHHHHHHHH
Q 030202           96 INAEEMTLTYSIVDGN--VG-------FYGYVSTLTVAPKEN-GCYIEWKYEVEPVKGWRLEDL-DCFISSGLQVMARRM  164 (181)
Q Consensus        96 ~D~~~~~~~y~v~~g~--~p-------~~~~~~t~~v~p~~~-gT~v~W~~~~~p~~~~~~~~~-~~~~~~gl~~l~~~l  164 (181)
                      .+..+..+...+.+.+  .|       +..+.+.+.++|.++ +|+|++...++|.. ..+..+ ..+....+..+.+.|
T Consensus       112 ~~~~~~~~~i~~~s~~~~~P~~~~~vR~~~~~~~~~i~~~~~~~t~vt~~~~~dp~g-~iP~~lv~~~~~~~~~~~l~~l  190 (195)
T cd08876         112 QDADDGSVTITLEAAPEALPEQKGYVRIKTVEGQWTFTPLGNGKTRVTYQAYADPGG-SIPGWLANAFAKDAPYNTLENL  190 (195)
T ss_pred             EcCCCCEEEEEeecCCccCCCCCCeEEceeceeeEEEEECCCCeEEEEEEEEeCCCC-CCCHHHHHHHHHHHHHHHHHHH
Confidence            2221233333333221  12       456777889999976 59999999999974 444444 345666666676777


Q ss_pred             HHHH
Q 030202          165 KEAL  168 (181)
Q Consensus       165 e~~~  168 (181)
                      ++++
T Consensus       191 ~~~~  194 (195)
T cd08876         191 RKQL  194 (195)
T ss_pred             HHhh
Confidence            6654

Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a

>cd07826 SRPBCC_CalC_Aha1-like_9 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=98.72  E-value=1e-06  Score=66.29  Aligned_cols=137  Identities=13%  Similarity=0.039  Sum_probs=80.9

Q ss_pred             EEEEEEeCCCHHHHHHHHhccCCcccccccc-eeEEEecCCCCCCc-eEEEEeeeecCCCCCCCCCcCccceEEEEEEEE
Q 030202           19 RACEELTGVKAEQIWAFLEDFFGLDKWFPTL-TTCIPIQGISGQPG-CVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLAI   96 (181)
Q Consensus        19 ~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v-~~~~~~~G~~~~vG-svR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~~   96 (181)
                      .++.+| +||+++||+++.|-..+.+|+..- ..+...+.+ -.+| ..+....  .+ +   |  .  ...+.=+++++
T Consensus         3 ~i~r~~-~ap~e~Vw~a~Tdpe~l~~W~~p~~~~~~~~~~d-~r~GG~~~~~~~--~~-~---g--~--~~~~~g~~~ei   70 (142)
T cd07826           3 VITREF-DAPRELVFRAHTDPELVKRWWGPRGLTMTVCECD-IRVGGSYRYVHR--AP-D---G--E--EMGFHGVYHEV   70 (142)
T ss_pred             EEEEEE-CCCHHHHHHHhCCHHHHhhccCCCCCcceEEEEe-ccCCCEEEEEEE--CC-C---C--C--EecceEEEEEE
Confidence            467888 999999999999999999998532 122222211 1233 3443321  11 2   2  1  11356678889


Q ss_pred             ecCCCeEEEEEeecccceeeEEEEEEEEEcCCceEEEEEEEEeeCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 030202           97 NAEEMTLTYSIVDGNVGFYGYVSTLTVAPKENGCYIEWKYEVEPVKGWRLEDLDCFISSGLQVMARRMKEALQ  169 (181)
Q Consensus        97 D~~~~~~~y~v~~g~~p~~~~~~t~~v~p~~~gT~v~W~~~~~p~~~~~~~~~~~~~~~gl~~l~~~le~~~~  169 (181)
                      +| ++++.|+-.-...+-.....+++|.+.++||+++.+..+.... ............|...+..+|++++.
T Consensus        71 ~p-~~~l~~t~~~~~~~~~~s~v~~~l~~~~~gT~l~l~~~~~~~~-~~~~~~~~~~~~Gw~~~l~~L~~~l~  141 (142)
T cd07826          71 TP-PERIVQTEEFEGLPDGVALETVTFTELGGRTRLTATSRYPSKE-ARDGVLASGMEEGMEESYDRLDELLA  141 (142)
T ss_pred             cC-CCEEEEEeEecCCCCCceEEEEEEEECCCCEEEEEEEEeCCHH-HHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence            87 5677776442222223457789999988889999886653211 11112233456677777777777664

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>COG3427 Carbon monoxide dehydrogenase subunit G, CoxG [Energy production and conversion]

Probab=98.70  E-value=3.8e-07  Score=69.30  Aligned_cols=107  Identities=16%  Similarity=0.312  Sum_probs=73.1

Q ss_pred             EEEEeCCCHHHHHHHHhccCCcccccccceeEEEecCCCCCCceEEEEeeeecCCCCCCCCCcCccceEEEEEEEEecCC
Q 030202           21 CEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLAINAEE  100 (181)
Q Consensus        21 ~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~G~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~~D~~~  100 (181)
                      +..| ++|+++||++|.|.+.+..-+|++.+.+. .|+ .-.+.+|.--+   |..   +     --.-+-++..+|+.+
T Consensus         6 ~f~V-~~p~e~Vw~~L~dpe~~a~ciPG~qs~e~-~g~-e~~~~v~l~ig---~l~---~-----~~~g~~~~~~v~~~~   71 (146)
T COG3427           6 TFRV-AAPPEAVWEFLNDPEQVAACIPGVQSVET-NGD-EYTAKVKLKIG---PLK---G-----TFSGRVRFVNVDEPP   71 (146)
T ss_pred             eEEe-cCCHHHHHHHhcCHHHHHhhcCCcceeee-cCC-eEEEEEEEeec---cee---E-----EEEEEEEEccccCCC
Confidence            5678 99999999999999999888999877664 343 11122222221   110   0     002344566657777


Q ss_pred             CeEEEEEeeccc-ceeeEEEEEEEEEcCCceEEEEEEEEeeC
Q 030202          101 MTLTYSIVDGNV-GFYGYVSTLTVAPKENGCYIEWKYEVEPV  141 (181)
Q Consensus       101 ~~~~y~v~~g~~-p~~~~~~t~~v~p~~~gT~v~W~~~~~p~  141 (181)
                      ++++-+...+.. .+-...+.++|.|.+++|+|.|.++.+-.
T Consensus        72 ~~~~i~g~G~~~~g~~~~~~~v~l~~~g~gt~v~w~~~~~~g  113 (146)
T COG3427          72 RSITINGSGGGAAGFADGTVDVQLEPSGEGTRVNWFADANVG  113 (146)
T ss_pred             cEEEEEeecccccceeeeeeEEEEEEcCCCcEEEEEEEcccc
Confidence            888877666333 46677888999999999999999998853

>cd08895 SRPBCC_CalC_Aha1-like_2 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=98.68  E-value=3.2e-06  Score=63.67  Aligned_cols=137  Identities=17%  Similarity=0.161  Sum_probs=79.5

Q ss_pred             EEEEEEeCCCHHHHHHHHhccCCccccccc-ceeEEEe--cCCCCCCceEEEEeeeecCCCCC-CCCCcCccceEEEEEE
Q 030202           19 RACEELTGVKAEQIWAFLEDFFGLDKWFPT-LTTCIPI--QGISGQPGCVRFCAGFKTPVDNK-DDDHEQSVNWTKQKLL   94 (181)
Q Consensus        19 ~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~-v~~~~~~--~G~~~~vGsvR~~~~~~~~~~g~-~G~~~~~~~~~~Erl~   94 (181)
                      .++..| +||+++||+++.|...+.+|++. -..+...  +-..|  |..+.......+..|. +|  .  ...+.=+++
T Consensus         3 ~~~r~i-~ap~e~Vw~a~td~~~~~~W~~p~~~~~~~~~~d~~~G--G~~~~~~~~~~~~~g~~~g--~--~~~~~g~v~   75 (146)
T cd08895           3 RLHRVI-AAPPERVYRAFLDPDALAKWLPPDGMTGTVHEFDAREG--GGFRMSLTYFDPSVGKTTG--N--TDVFGGRFL   75 (146)
T ss_pred             EEEEEE-CCCHHHHHHHHcCHHHHhhcCCCCCeEeEEEEEecccC--CeEEEEEEcCCccccccCC--c--EeeeEEEEE
Confidence            467889 99999999999999999999962 1122222  21122  2222221100000000 01  0  013455788


Q ss_pred             EEecCCCeEEEEEee--cccceeeEEEEEEEEEcCCceEEEEEEEEeeCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 030202           95 AINAEEMTLTYSIVD--GNVGFYGYVSTLTVAPKENGCYIEWKYEVEPVKGWRLEDLDCFISSGLQVMARRMKEALQ  169 (181)
Q Consensus        95 ~~D~~~~~~~y~v~~--g~~p~~~~~~t~~v~p~~~gT~v~W~~~~~p~~~~~~~~~~~~~~~gl~~l~~~le~~~~  169 (181)
                      ++++ ++++.|+..-  ...+ .....++.|++.+++|+|+++...-+..     ........|-..+...|++++.
T Consensus        76 ~v~p-~~~i~~~~~~~~~~~~-~~~~v~~~~~~~~~~T~lt~~~~~~~~~-----~~~~~~~~GW~~~l~~L~~~le  145 (146)
T cd08895          76 ELVP-NERIVYTDVFDDPSLS-GEMTMTWTLSPVSGGTDVTIVQSGIPDG-----IPPEDCELGWQESLANLAALVE  145 (146)
T ss_pred             EEcC-CCEEEEEEEecCCCCC-ceEEEEEEEEecCCCEEEEEEEeCCCch-----hhhhHHHHHHHHHHHHHHHHhc
Confidence            8988 5688777542  1122 2346789999998889999998753321     1123456666666667777664

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>COG5637 Predicted integral membrane protein [Function unknown]

Probab=98.62  E-value=6.6e-07  Score=69.89  Aligned_cols=106  Identities=16%  Similarity=0.275  Sum_probs=76.4

Q ss_pred             eEEEEEEeCCCHHHHHHHHhccCCcccccccceeEEEecCCCCCCceEEEEeeeecCCCCCCCCCcCccceEEEEEEEEe
Q 030202           18 GRACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLAIN   97 (181)
Q Consensus        18 ~~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~G~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~~D   97 (181)
                      =+++++| ++|++.||++++|++++|.|+..+.+.++++...    + |...-  .|  +  |   ..+.| +-+|++. 
T Consensus        72 v~~~V~I-~kPae~vy~~W~dLe~lP~~Mkhl~SVkVlddkr----S-rW~~~--ap--~--g---~~v~W-ea~it~d-  134 (217)
T COG5637          72 VEVQVTI-DKPAEQVYAYWRDLENLPLWMKHLDSVKVLDDKR----S-RWKAN--AP--L--G---LEVEW-EAEITKD-  134 (217)
T ss_pred             EEEEEEe-CChHHHHHHHHHhhhhhhHHHHhhceeeccCCCc----c-ceeEc--CC--C--C---ceEEE-eehhhcc-
Confidence            4578899 9999999999999999999999998888776432    2 33321  23  2  3   22323 4455554 


Q ss_pred             cCCCeEEEEEeecc-cceeeEEEEEEEEEcCC-ceEEEEEEEEeeCCC
Q 030202           98 AEEMTLTYSIVDGN-VGFYGYVSTLTVAPKEN-GCYIEWKYEVEPVKG  143 (181)
Q Consensus        98 ~~~~~~~y~v~~g~-~p~~~~~~t~~v~p~~~-gT~v~W~~~~~p~~~  143 (181)
                      ..+..+.|.-++|. ++   ..+.++|.+..+ .|+|+-++.|.|..+
T Consensus       135 ~~~e~I~W~Sl~Ga~v~---NsG~VrF~~~pg~~t~V~v~lsY~~Pgg  179 (217)
T COG5637         135 IPGERIQWESLPGARVE---NSGAVRFYDAPGDSTEVKVTLSYRPPGG  179 (217)
T ss_pred             CCCcEEeeecCCCCcCC---CCccEEeeeCCCCceEEEEEEEecCCcc
Confidence            45789999988873 33   255678888765 589999999998754

>cd08896 SRPBCC_CalC_Aha1-like_3 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=98.60  E-value=2.6e-06  Score=64.15  Aligned_cols=134  Identities=13%  Similarity=0.090  Sum_probs=77.5

Q ss_pred             EEEEEEeCCCHHHHHHHHhccCCccccccc----ceeEEEecCCCCCCceEEEEeeeecCCCCCCCCCcCccceEEEEEE
Q 030202           19 RACEELTGVKAEQIWAFLEDFFGLDKWFPT----LTTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLL   94 (181)
Q Consensus        19 ~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~----v~~~~~~~G~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl~   94 (181)
                      .+++.| +||+++||+++.|-..+.+|++.    +..+...-. .|  |..+....  .+ +   |  . . -.+.=+++
T Consensus         3 ~i~r~i-~a~~e~Vw~a~t~pe~~~~W~~p~~~~~~~~~~d~~-~G--G~~~~~~~--~~-~---g--~-~-~~~~g~v~   68 (146)
T cd08896           3 VLSRTI-DAPRELVWRAWTEPELLKQWFCPKPWTTEVAELDLR-PG--GAFRTVMR--GP-D---G--E-E-FPNPGCFL   68 (146)
T ss_pred             EEEEEe-CCCHHHHHHHcCCHHHHhccCCCCCccceEEEEEee-cC--cEEEEEEE--CC-C---C--C-E-ecceEEEE
Confidence            467889 99999999999999999899852    222222111 11  33444321  11 2   2  1 0 13456788


Q ss_pred             EEecCCCeEEEEEe--ecccce-e-eEEEEEEEEEcCCceEEEEEEEEeeCCCCCHHHHH-HHHHHHHHHHHHHHHHHHh
Q 030202           95 AINAEEMTLTYSIV--DGNVGF-Y-GYVSTLTVAPKENGCYIEWKYEVEPVKGWRLEDLD-CFISSGLQVMARRMKEALQ  169 (181)
Q Consensus        95 ~~D~~~~~~~y~v~--~g~~p~-~-~~~~t~~v~p~~~gT~v~W~~~~~p~~~~~~~~~~-~~~~~gl~~l~~~le~~~~  169 (181)
                      ++++ ++++.|+-.  ++..+. . ....+++|++.++||+++.+..+.+.  ...+... .-+..|...+..+|++++.
T Consensus        69 ~i~p-~~~l~~t~~~~~~~~~~~~~~~~v~~~~~~~~~gT~Ltl~~~~~~~--~~~~~~~~~~~~~GW~~~l~~L~~~l~  145 (146)
T cd08896          69 EVVP-GERLVFTDALTPGWRPAEKPFMTAIITFEDEGGGTRYTARARHWTE--ADRKQHEEMGFHDGWGTAADQLAALAE  145 (146)
T ss_pred             EEeC-CCEEEEEEeecCCcCCCCCCcEEEEEEEEecCCcEEEEEEEEeCCH--HHHHHHHHcCHHHHHHHHHHHHHHHHh
Confidence            9998 577777632  221111 1 13568999998889999986443221  1111111 1135667777777777664

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>cd08900 SRPBCC_CalC_Aha1-like_7 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=98.58  E-value=6.9e-06  Score=61.53  Aligned_cols=134  Identities=14%  Similarity=0.120  Sum_probs=78.3

Q ss_pred             EEEEEEeCCCHHHHHHHHhccCCcccccccc--eeEEEecCCCCCCc-eEEEEeeeecCCCCCCCCCcCccceEEEEEEE
Q 030202           19 RACEELTGVKAEQIWAFLEDFFGLDKWFPTL--TTCIPIQGISGQPG-CVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLA   95 (181)
Q Consensus        19 ~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v--~~~~~~~G~~~~vG-svR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~   95 (181)
                      .++..| +||+++||+++.|-..+.+|+..-  ..+.....+ -.+| ..+....  .+ +   |  .  .....=++++
T Consensus         3 ~i~r~~-~ap~e~Vw~a~tdp~~l~~W~~~~~~~~~~~~~~d-~~~Gg~~~~~~~--~~-~---g--~--~~~~~g~~~~   70 (143)
T cd08900           3 TLERTY-PAPPERVFAAWSDPAARARWFVPSPDWTVLEDEFD-FRVGGREVSRGG--PK-G---G--P--EITVEARYHD   70 (143)
T ss_pred             EEEEEe-CCCHHHHHHHhcCHHHHHhcCCCCCCCceeeeEEe-cCCCCEEEEEEE--CC-C---C--C--EEeeeEEEEE
Confidence            457788 999999999999999999998531  112211111 1223 4444321  11 2   2  1  1245668888


Q ss_pred             EecCCCeEEEEEee--cccceeeEEEEEEEEEcCCceEEEEEEEEeeCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 030202           96 INAEEMTLTYSIVD--GNVGFYGYVSTLTVAPKENGCYIEWKYEVEPVKGWRLEDLDCFISSGLQVMARRMKEAL  168 (181)
Q Consensus        96 ~D~~~~~~~y~v~~--g~~p~~~~~~t~~v~p~~~gT~v~W~~~~~p~~~~~~~~~~~~~~~gl~~l~~~le~~~  168 (181)
                      +++ ++++.|+-..  ...+......++.|.+.++||+++.+...-.....  +. ...+..|-..+..+|++++
T Consensus        71 ~~p-~~~l~~t~~~~~~~~~~~~s~v~~~l~~~~~gT~l~~~~~~~~~~~~--~~-~~~~~~GW~~~l~~L~~~l  141 (143)
T cd08900          71 IVP-DERIVYTYTMHIGGTLLSASLATVEFAPEGGGTRLTLTEQGAFLDGD--DD-PAGREQGTAALLDNLAAEL  141 (143)
T ss_pred             ecC-CceEEEEEeeccCCccccceEEEEEEEECCCCEEEEEEEEEeccccc--ch-hhhHHHHHHHHHHHHHHHH
Confidence            987 6787776432  22222234578999998888999998665322111  11 2234555555556666655

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>COG2867 Oligoketide cyclase/lipid transport protein [Lipid metabolism]

Probab=98.55  E-value=1.1e-06  Score=66.54  Aligned_cols=133  Identities=9%  Similarity=0.077  Sum_probs=88.7

Q ss_pred             EEEEEeCCCHHHHHHHHhccCCcccccccceeEEEecCCCCCCceEEEEeeeecCCCCCCCCCcCccceEEEEEEEEecC
Q 030202           20 ACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLAINAE   99 (181)
Q Consensus        20 v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~G~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~~D~~   99 (181)
                      .+.-+ +.+|+++++++.|...||+++|.+..+.+.+..+...-+--.+.+      .  |  .  .+++.-|.+ .++.
T Consensus         6 ~s~lv-~y~a~~mF~LV~dV~~YP~FlP~C~~s~v~~~~~~~l~A~l~V~~------k--~--i--~e~F~Trv~-~~~~   71 (146)
T COG2867           6 RTALV-PYSASQMFDLVNDVESYPEFLPWCSASRVLERNERELIAELDVGF------K--G--I--RETFTTRVT-LKPT   71 (146)
T ss_pred             eeeec-cCCHHHHHHHHHHHHhCchhccccccceEeccCcceeEEEEEEEh------h--h--e--eeeeeeeee-ecCc
Confidence            34556 999999999999999999999999988887654433222222221      1  2  1  113444443 3344


Q ss_pred             CCeEEEEEeecccceeeEEEEEEEEEcC-CceEEEEEEEEeeCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 030202          100 EMTLTYSIVDGNVGFYGYVSTLTVAPKE-NGCYIEWKYEVEPVKGWRLEDLDCFISSGLQVMARRMKEAL  168 (181)
Q Consensus       100 ~~~~~y~v~~g~~p~~~~~~t~~v~p~~-~gT~v~W~~~~~p~~~~~~~~~~~~~~~gl~~l~~~le~~~  168 (181)
                      .+.+.=+.++|  |++...+.++++|.+ ++|+|...++|+...-.....+..++..+...|.+.+++++
T Consensus        72 ~~~I~~~l~~G--PFk~L~~~W~F~pl~~~~ckV~f~ldfeF~s~ll~~~~g~~f~~~a~~mv~aF~kRA  139 (146)
T COG2867          72 ARSIDMKLIDG--PFKYLKGGWQFTPLSEDACKVEFFLDFEFKSRLLGALIGPVFKRLASKMVEAFEKRA  139 (146)
T ss_pred             hhhhhhhhhcC--ChhhhcCceEEEECCCCceEEEEEEEeeehhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555555655  457778899999966 57999999999976533333345667777777777777765

>cd08892 SRPBCC_Aha1 Putative hydrophobic ligand-binding SRPBCC domain of the Hsp90 co-chaperone Aha1 and related proteins

Probab=98.55  E-value=4.3e-06  Score=61.66  Aligned_cols=99  Identities=13%  Similarity=0.059  Sum_probs=64.3

Q ss_pred             EEEEEEeCCCHHHHHHHHhccCCcccccccceeEEEecCCCCCCceEEEEeeeecCCCCCCCCCcCccceEEEEEEEEec
Q 030202           19 RACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLAINA   98 (181)
Q Consensus        19 ~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~G~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~~D~   98 (181)
                      .+++.| +||+++||+++.|-..+.+|+..........|     |..+...          |       .+.=+++++++
T Consensus         3 ~~~r~i-~ap~e~Vw~A~T~~e~l~~W~~~~~~~d~~~G-----G~~~~~~----------g-------~~~g~~~~i~p   59 (126)
T cd08892           3 SLTETF-QVPAEELYEALTDEERVQAFTRSPAKVDAKVG-----GKFSLFG----------G-------NITGEFVELVP   59 (126)
T ss_pred             EEEEEE-CCCHHHHHHHHCCHHHHHhhcCCCceecCCCC-----CEEEEeC----------C-------ceEEEEEEEcC
Confidence            467888 99999999999999999899853222222112     3333321          2       24456888887


Q ss_pred             CCCeEEEEEeecccce-eeEEEEEEEEEcCCceEEEEEEEEeeC
Q 030202           99 EEMTLTYSIVDGNVGF-YGYVSTLTVAPKENGCYIEWKYEVEPV  141 (181)
Q Consensus        99 ~~~~~~y~v~~g~~p~-~~~~~t~~v~p~~~gT~v~W~~~~~p~  141 (181)
                       +++++|+-.....+. .....++.|++.++||+|+.+-..-|.
T Consensus        60 -~~~l~~~w~~~~~~~~~~s~v~~~l~~~~~gT~ltl~~~g~~~  102 (126)
T cd08892          60 -GKKIVQKWRFKSWPEGHYSTVTLTFTEKDDETELKLTQTGVPA  102 (126)
T ss_pred             -CCEEEEEEEcCCCCCCCcEEEEEEEEECCCCEEEEEEEECCCC
Confidence             567766544222221 234678999998788999888776654

This subfamily includes the C-terminal SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Aha1, and related domains. Proteins in this group belong to the SRPBCC domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Aha1 is one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Hsp90, Aha1, and other accessory proteins interact in a chaperone cycle driven by ATP binding and hydrolysis. Aha1 promotes dimerization of the N-terminal domains of Hsp90, and stimulates its low intrinsic ATPase activity. One Aha1 molecule binds per Hsp90 dimer. The N- and C- terminal domains of Aha1 cooperatively bind across the dimer interface of Hsp90. The C-terminal domain of Aha1 binds the N-terminal Hsp90 ATPase domain. Aha1 may regulate the dwell time of Hsp90 with client proteins. Aha1 m

>cd08901 SRPBCC_CalC_Aha1-like_8 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=98.50  E-value=4.1e-06  Score=62.45  Aligned_cols=128  Identities=12%  Similarity=0.017  Sum_probs=77.9

Q ss_pred             EEEEEEeCCCHHHHHHHHhccCCcccccccceeEEEecCCCCCCceEEEEeeeecCCCCCCCCCcCccceEEEEEEEEec
Q 030202           19 RACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLAINA   98 (181)
Q Consensus        19 ~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~G~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~~D~   98 (181)
                      ..++.| +||+++||+++.+-..+.+|++.-...+...|     |..+. .+.  + .+  +       .+.=+++++++
T Consensus         3 ~~~~~i-~ap~e~Vw~a~t~p~~l~~W~~~~~~~~~~~G-----g~~~~-~~~--~-~~--~-------~~~g~~~~~~p   63 (136)
T cd08901           3 KTAMLI-RRPVAEVFEAFVDPEITTKFWFTGSSGRLEEG-----KTVTW-DWE--M-YG--A-------SVPVNVLEIEP   63 (136)
T ss_pred             eEEEEe-cCCHHHHHHHhcCHHHhccccccCCCccccCC-----CEEEE-EEE--c-cC--C-------ceEEEEEEEcC
Confidence            467889 99999999999999999998754222222222     33333 221  1 11  1       34557888887


Q ss_pred             CCCeEEEEEeecccceeeEEEEEEEEEcC-CceEEEEEEEEeeCCCCCHHHHH--HHHHHHHHHHHHHHHHHHhhh
Q 030202           99 EEMTLTYSIVDGNVGFYGYVSTLTVAPKE-NGCYIEWKYEVEPVKGWRLEDLD--CFISSGLQVMARRMKEALQAY  171 (181)
Q Consensus        99 ~~~~~~y~v~~g~~p~~~~~~t~~v~p~~-~gT~v~W~~~~~p~~~~~~~~~~--~~~~~gl~~l~~~le~~~~~~  171 (181)
                       ++++.|+-.... +  ....+++|.+.+ +||+++-+-..-|..  ..+.+.  .....|...+...|+++++++
T Consensus        64 -~~~l~~~w~~~~-~--~s~v~~~l~~~~~ggT~ltl~~~~~~~~--~~~~~~~~~~~~~GW~~~L~~L~~~le~g  133 (136)
T cd08901          64 -NKRIVIEWGDPG-E--PTTVEWTFEELDDGRTFVTITESGFPGT--DDEGLKQALGSTEGWTLVLAGLKAYLEHG  133 (136)
T ss_pred             -CCEEEEEecCCC-C--CEEEEEEEEECCCCcEEEEEEECCCCCC--cHHHHHHHhcCCCCHHHHHHHHHHHHhcC
Confidence             678888755321 1  245789999988 679998875433321  221111  113456666667777776554

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>cd08891 SRPBCC_CalC Ligand-binding SRPBCC domain of Micromonospora echinospora CalC and related proteins

Probab=98.48  E-value=8.7e-06  Score=61.46  Aligned_cols=131  Identities=13%  Similarity=0.140  Sum_probs=75.6

Q ss_pred             EEEEEEeCCCHHHHHHHHhccCCccccccc-c-------eeEEEecCCCCCCceEEEEeeeecCCCCCCCCCcCccceEE
Q 030202           19 RACEELTGVKAEQIWAFLEDFFGLDKWFPT-L-------TTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTK   90 (181)
Q Consensus        19 ~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~-v-------~~~~~~~G~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~   90 (181)
                      +.+++| +||+++||+++.|  .+.+|++. .       ..|.. +-..|  |..+...    + +   |  . .  ...
T Consensus         3 ~~~~~i-~Ap~e~Vw~a~t~--~l~~W~~p~~~~~~~~~~~~~~-d~~~G--G~~~~~~----~-~---g--~-~--~~~   63 (149)
T cd08891           3 RKSVTV-PAPPERAFEVFTE--GFGAWWPPEYHFVFSPGAEVVF-EPRAG--GRWYEIG----E-D---G--T-E--CEW   63 (149)
T ss_pred             EEEEEe-cCCHHHHHHHHHh--chhhccCCCcccccCCCccEEE-cccCC--cEEEEec----C-C---C--c-E--ece
Confidence            467889 9999999999998  47788752 1       22333 21111  3333221    1 2   3  1 1  234


Q ss_pred             EEEEEEecCCCeEEEEEeec--ccce--eeEEEEEEEEEcC-CceEEEEEEEEeeCCCC--CHHHHHHHHHHHHHHHHHH
Q 030202           91 QKLLAINAEEMTLTYSIVDG--NVGF--YGYVSTLTVAPKE-NGCYIEWKYEVEPVKGW--RLEDLDCFISSGLQVMARR  163 (181)
Q Consensus        91 Erl~~~D~~~~~~~y~v~~g--~~p~--~~~~~t~~v~p~~-~gT~v~W~~~~~p~~~~--~~~~~~~~~~~gl~~l~~~  163 (181)
                      =+++++++ +++++|+-...  ..+.  ..-..+++|++.+ +||+|+.+...-+....  ........+..|-..+..+
T Consensus        64 g~v~~v~p-~~~l~~tw~~~~~~~~~~~~~t~vt~~l~~~~~~gT~ltl~~~~~~~~~~~~~~~~~~~~~~~GW~~~L~~  142 (149)
T cd08891          64 GTVLAWEP-PSRLVFTWQINADWRPDPDKASEVEVRFEAVGAEGTRVELEHRGFERHGDGWEAAAMRMGYDGGWPLLLER  142 (149)
T ss_pred             EEEEEEcC-CCEEEEEeccCCCcCcCCCCceEEEEEEEECCCCCeEEEEEEecccccCcchhhHHHHhcccCcHHHHHHH
Confidence            67888887 57887764411  1111  1346789999998 78999988665432110  1122223355666666666


Q ss_pred             HHHHHh
Q 030202          164 MKEALQ  169 (181)
Q Consensus       164 le~~~~  169 (181)
                      |++++.
T Consensus       143 L~~~l~  148 (149)
T cd08891         143 YAAAAE  148 (149)
T ss_pred             HHHHhc
Confidence            666654

This subfamily includes Micromonospora echinospora CalC (MeCalC) and related proteins. These proteins belong to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM). Enediyne antibiotics are antitumor agents. Enediynes have an in vitro and in vivo role as DNA damaging agents; they consist of a DNA recognition unit (e.g., aryltetrasaccharide of CLM), an activating component (e.g., methyl trisulfide of CLM), which promotes cycloaromatization, and the enediyne warhead which cycloaromatizes to a reactive diradical species, resulting in oxidative strand cleavage of the targeted DNA sequence. MeCalC confers resistance to CLM by a self sacrificing mechanism: the transient enediyne diradical speci

>PF06240 COXG: Carbon monoxide dehydrogenase subunit G (CoxG); InterPro: IPR010419 The CO dehydrogenase structural genes coxMSL are flanked by nine accessory genes arranged as the cox gene cluster

Probab=98.46  E-value=5.1e-06  Score=62.47  Aligned_cols=132  Identities=17%  Similarity=0.268  Sum_probs=70.7

Q ss_pred             EEEEeCCCHHHHHHHHhccCCcccccccceeEEEecCCCCCCceEEEEeeeecCCCCCCCCCcCccceEEEEEEEEecCC
Q 030202           21 CEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLAINAEE  100 (181)
Q Consensus        21 ~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~G~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~~D~~~  100 (181)
                      +.+| ++|+++||++|.|..++..-+|++.+.+... +. --+.++.--+   |..+        .-..+=++...+++.
T Consensus         2 s~~v-~a~~~~vw~~l~D~~~l~~ciPG~~~~e~~~-~~-~~~~~~v~vG---~i~~--------~~~g~~~~~~~~~~~   67 (140)
T PF06240_consen    2 SFEV-PAPPEKVWAFLSDPENLARCIPGVESIEKVG-DE-YKGKVKVKVG---PIKG--------TFDGEVRITEIDPPE   67 (140)
T ss_dssp             EEEE-CS-HHHHHHHHT-HHHHHHHSTTEEEEEEEC-TE-EEEEEEEESC---CCEE--------EEEEEEEEEEEETTT
T ss_pred             cEEe-cCCHHHHHHHhcCHHHHHhhCCCcEEeeecC-cE-EEEEEEEEec---cEEE--------EEEEEEEEEEcCCCc
Confidence            5678 9999999999999999988889988777654 21 1122221111   1000        002344566777754


Q ss_pred             Ce-EEEEEeecccceeeEEEEEEEEEcCC-ceEEEEEEEEeeCC---CCCHHHHHHHHHHHHHHHHHHHHHH
Q 030202          101 MT-LTYSIVDGNVGFYGYVSTLTVAPKEN-GCYIEWKYEVEPVK---GWRLEDLDCFISSGLQVMARRMKEA  167 (181)
Q Consensus       101 ~~-~~y~v~~g~~p~~~~~~t~~v~p~~~-gT~v~W~~~~~p~~---~~~~~~~~~~~~~gl~~l~~~le~~  167 (181)
                      +. +..+....... ......+++...++ +|+|+|..+++...   ......+....+..++.+.+.|++.
T Consensus        68 ~~~~~~~g~g~~~~-~~~~~~~~~~~~~~~~T~v~~~~~~~~~G~la~~g~~~i~~~~~~l~~~f~~~l~~~  138 (140)
T PF06240_consen   68 SYTLEFEGRGRGGG-SSASANITLSLEDDGGTRVTWSADVEVGGPLASLGQRLIESVARRLIEQFFENLERK  138 (140)
T ss_dssp             EEEEEEEEEECTCC-EEEEEEEEEEECCCTCEEEEEEEEEEEECHHHHC-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ceEeeeeccCCccc-eEEEEEEEEEcCCCCCcEEEEEEEEEEccCHHHhhHHHHHHHHHHHHHHHHHHHHHh
Confidence            33 33333322222 23345555655443 49999999998532   1122223344444445555555443

The cox genes are specifically and coordinately transcribed under chemolithoautotrophic conditions in the presence of CO as carbon and energy source [].; PDB: 2NS9_A 2PCS_A.

>PF08327 AHSA1: Activator of Hsp90 ATPase homolog 1-like protein; InterPro: IPR013538 This family includes eukaryotic, prokaryotic and archaeal proteins that bear similarity to a C-terminal region of human activator of 90 kDa heat shock protein ATPase homologue 1 (AHSA1/p38, O95433 from SWISSPROT)

Probab=98.43  E-value=4.7e-06  Score=60.16  Aligned_cols=120  Identities=21%  Similarity=0.279  Sum_probs=72.3

Q ss_pred             CCCHHHHHHHHhccCCcccccccceeEEEecCCCCCCc-eEEEEeeeecCCCCCCCCCcCccceEEEEEEEEecCCCeEE
Q 030202           26 GVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPG-CVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLAINAEEMTLT  104 (181)
Q Consensus        26 ~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~G~~~~vG-svR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~~D~~~~~~~  104 (181)
                      +||+++||+++.+-..+.+|++. ..... +-   .+| ..+...    + ++  +    . ....=+++++++ ++.+.
T Consensus         1 ~ap~e~Vw~a~t~~~~~~~W~~~-~~~~~-~~---~~Gg~~~~~~----~-~g--~----~-~~~~~~v~~~~p-~~~i~   62 (124)
T PF08327_consen    1 DAPPERVWEALTDPEGLAQWFTT-SEAEM-DF---RPGGSFRFMD----P-DG--G----E-FGFDGTVLEVEP-PERIV   62 (124)
T ss_dssp             SSSHHHHHHHHHSHHHHHHHSEE-EEEEE-EC---STTEEEEEEE----T-TS--E----E-EEEEEEEEEEET-TTEEE
T ss_pred             CcCHHHHHHHHCCHhHHhhccCC-Cccee-ee---ecCCEEEEEe----c-CC--C----C-ceeeEEEEEEeC-CEEEE
Confidence            69999999999999999999321 11222 11   223 455511    1 22  1    1 134445899988 57788


Q ss_pred             EEEeecccc-eeeEEEEEEEEEcCCceEEEEEEEEeeCCCCCHHHHHHH-HHHHHHHHHHHHHHHH
Q 030202          105 YSIVDGNVG-FYGYVSTLTVAPKENGCYIEWKYEVEPVKGWRLEDLDCF-ISSGLQVMARRMKEAL  168 (181)
Q Consensus       105 y~v~~g~~p-~~~~~~t~~v~p~~~gT~v~W~~~~~p~~~~~~~~~~~~-~~~gl~~l~~~le~~~  168 (181)
                      |+......+ -.....+++|.+.+++|+|+-+..-.+..     ..... +..|.+.+..+|++++
T Consensus        63 ~~~~~~~~~~~~~~~v~~~~~~~~~~T~l~~~~~~~~~~-----~~~~~~~~~gw~~~l~~L~~~l  123 (124)
T PF08327_consen   63 FTWRMPDDPDGPESRVTFEFEEEGGGTRLTLTHSGFPDD-----DEEEEGMEQGWEQMLDRLKAYL  123 (124)
T ss_dssp             EEEEEETSSSCEEEEEEEEEEEETTEEEEEEEEEEEHSH-----HHHHHCHHHHHHHHHHHHHHHH
T ss_pred             EEEEccCCCCCCceEEEEEEEEcCCcEEEEEEEEcCCcc-----HHHHHHHHHHHHHHHHHHHHHh
Confidence            885543322 33567889999977789998887544431     11121 5555555556666555

This protein is known to interact with the middle domain of Hsp90, and stimulate its ATPase activity []. It is probably a general up regulator of Hsp90 function, particularly contributing to its efficiency in conditions of increased stress []. p38 is also known to interact with the cytoplasmic domain of the VSV G protein, and may thus be involved in protein transport []. It has also been reported as being under expressed in Down's syndrome. This region is found repeated in two members of this family (Q8XY04 from SWISSPROT and Q6MH87 from SWISSPROT). ; GO: 0006950 response to stress; PDB: 2KEW_A 2KTE_A 2IL5_A 1ZXF_A 2L65_A 2GKD_A 1XN6_A 3OTL_B 2LCG_A 3Q63_D ....

>COG3832 Uncharacterized conserved protein [Function unknown]

Probab=98.02  E-value=0.00015  Score=55.21  Aligned_cols=133  Identities=16%  Similarity=0.210  Sum_probs=73.7

Q ss_pred             EEEEEEeCCCHHHHHHHHhccCCcccccccceeEEEecCCCCCCceEEEEeeeecCCCCCCCCCcCccceEEEEEEEEec
Q 030202           19 RACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLAINA   98 (181)
Q Consensus        19 ~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~G~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~~D~   98 (181)
                      .++..| ++|+++||+++.|-..+.+|+. -..+.. +...++ +....+..   + +   |   + ...+..++.++++
T Consensus        11 ~~er~i-~aP~e~Vf~A~Tdpe~l~~W~~-~~~~~~-d~r~gg-~~~~~~~~---~-~---g---~-~~~~~~~~~~v~p   75 (149)
T COG3832          11 EIERLI-DAPPEKVFEALTDPELLARWFM-PGGAEF-DARTGG-GERVRFRG---P-D---G---P-VHSFEGEYLEVVP   75 (149)
T ss_pred             EEEEee-cCCHHHHHHHhcCHHHHHhhcC-CCCCcc-ceecCC-ceEEeeec---C-C---C---C-eeecceEEEEEcC
Confidence            457788 9999999999999999999998 322211 111110 12222222   1 2   2   1 1256778888988


Q ss_pred             CCCeEEEE--EeecccceeeEEEEEEEEEcCCc--eEEEEEEEEeeCCCCCHHHH-HHHHHHHHHHHHHHHHHHHh
Q 030202           99 EEMTLTYS--IVDGNVGFYGYVSTLTVAPKENG--CYIEWKYEVEPVKGWRLEDL-DCFISSGLQVMARRMKEALQ  169 (181)
Q Consensus        99 ~~~~~~y~--v~~g~~p~~~~~~t~~v~p~~~g--T~v~W~~~~~p~~~~~~~~~-~~~~~~gl~~l~~~le~~~~  169 (181)
                       ++++.|+  ..+...|...-..+++|++..+|  |+..-...+.-..  ..+.. ...+..|...+...|++.+.
T Consensus        76 -~~rIv~tw~~~~~~~~~~~~~v~~~l~~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~Gw~~~~~~l~~~l~  148 (149)
T COG3832          76 -PERIVFTWDFDEDGEPFLKSLVTITLTPEDDGGTTTLVRTSGGGFLE--DEDQKLGMGMEEGWGQLLDNLKALLE  148 (149)
T ss_pred             -CcEEEEEeccCCCCCcccCceEEEEEEEecCCCcEEEEEEeeccccc--hhHHHhCcchhhhHHHHHHHHHHhhc
Confidence             5555544  44444343345778888887654  2222222221111  11111 11247777778777777664

>PTZ00220 Activator of HSP-90 ATPase; Provisional

Probab=97.98  E-value=0.00014  Score=54.21  Aligned_cols=89  Identities=8%  Similarity=-0.008  Sum_probs=54.5

Q ss_pred             CCCHHHHHHHHhccCCcccccccceeEEEecCCCCCCc-eEEEEeeeecCCCCCCCCCcCccceEEEEEEEEecCCCeEE
Q 030202           26 GVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPG-CVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLAINAEEMTLT  104 (181)
Q Consensus        26 ~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~G~~~~vG-svR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~~D~~~~~~~  104 (181)
                      +||+++||+++.|-..+.+|+-. ..++. +   -.+| .-+.+.          |       .+.=+++++++ ++++.
T Consensus         2 ~ap~e~Vw~A~Tdp~~l~~w~~~-~~~~~-d---~~~GG~f~~~~----------~-------~~~G~~~ev~p-p~rlv   58 (132)
T PTZ00220          2 YVPPEVLYNAFLDAYTLTRLSLG-SPAEM-D---AKVGGKFSLFN----------G-------SVEGEFTELEK-PKKIV   58 (132)
T ss_pred             CCCHHHHHHHHcCHHHHHHHhcC-CCccc-c---CCcCCEEEEec----------C-------ceEEEEEEEcC-CCEEE
Confidence            89999999999998888888521 11222 1   1233 333332          1       24446788888 45665


Q ss_pred             EEEeecc-cceeeEEEEEEEEEcC-CceEEEEEEE
Q 030202          105 YSIVDGN-VGFYGYVSTLTVAPKE-NGCYIEWKYE  137 (181)
Q Consensus       105 y~v~~g~-~p~~~~~~t~~v~p~~-~gT~v~W~~~  137 (181)
                      |+-.-.. .+-.....+++|++.+ ++|+++-+..
T Consensus        59 ~tw~~~~~~~~~~s~vt~~~~~~~~g~T~lt~~~~   93 (132)
T PTZ00220         59 QKWRFRDWEEDVYSKVTIEFRAVEEDHTELKLTQT   93 (132)
T ss_pred             EEEecCCCCCCCceEEEEEEEeCCCCcEEEEEEEe
Confidence            5443221 1111246789999976 4799998877

>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding

Probab=97.96  E-value=0.00098  Score=53.60  Aligned_cols=122  Identities=10%  Similarity=-0.045  Sum_probs=75.9

Q ss_pred             EEEEeCCCHHHHHHHHhccCCcccccccceeEEEecCCCCCCceEEEEeeeecCC--CCCCCCCcCccceEEEEEEEEec
Q 030202           21 CEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAGFKTPV--DNKDDDHEQSVNWTKQKLLAINA   98 (181)
Q Consensus        21 ~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~G~~~~vGsvR~~~~~~~~~--~g~~G~~~~~~~~~~Erl~~~D~   98 (181)
                      ..+| ++|+++||++|.|....++|.+.+.++++++..+....-++...-...|.  ..  .      ..+.-+....+.
T Consensus        50 e~~v-~as~~~v~~ll~D~~~r~~Wd~~~~~~~vl~~~~~d~~i~y~~~~~Pwp~~~~~--R------DfV~l~~~~~~~  120 (205)
T cd08874          50 AGVI-KAPLATVWKAVKDPRTRFLYDTMIKTARIHKTFTEDICLVYLVHETPLCLLKQP--R------DFCCLQVEAKEG  120 (205)
T ss_pred             EEEE-cCCHHHHHHHHhCcchhhhhHHhhhheeeeeecCCCeEEEEEEecCCCCCCCCC--C------eEEEEEEEEECC
Confidence            5578 99999999999999999999999999988763332233344443212221  11  1      133333333333


Q ss_pred             CCCeEEEEEeec-cc--------ceeeEEEEEEEEEc---CC-ceEEEEEEEEeeCCCCCHHHHHH
Q 030202           99 EEMTLTYSIVDG-NV--------GFYGYVSTLTVAPK---EN-GCYIEWKYEVEPVKGWRLEDLDC  151 (181)
Q Consensus        99 ~~~~~~y~v~~g-~~--------p~~~~~~t~~v~p~---~~-gT~v~W~~~~~p~~~~~~~~~~~  151 (181)
                      +...+.-+-+.. ..        ......+-+.++|.   ++ .|+|++....+|..|..|..+.+
T Consensus       121 ~~~vi~~~SV~~~~~P~~~~~~VR~~~~~~gw~i~P~~~~g~~~t~vty~~q~DPggg~iP~~l~N  186 (205)
T cd08874         121 ELSVVACQSVYDKSMPEPGRSLVRGEILPSAWILEPVTVEGNQYTRVIYIAQVALCGPDVPAQLLS  186 (205)
T ss_pred             CcEEEEEEecccccCCCCCCCeEEeeeEeeeEEEEECccCCCCcEEEEEEEEECCCCCCCCHHHHh
Confidence            333333333332 11        23466778889998   76 49999999999985555655543

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.

>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins

Probab=97.60  E-value=0.0053  Score=49.26  Aligned_cols=139  Identities=11%  Similarity=0.180  Sum_probs=77.5

Q ss_pred             EEEEEEeCCCHHHHH-HHHhccCCcccccccceeEEEecCCCCCCceEEEEeeeecC---CCCCCCCCcCccceEEEEEE
Q 030202           19 RACEELTGVKAEQIW-AFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAGFKTP---VDNKDDDHEQSVNWTKQKLL   94 (181)
Q Consensus        19 ~v~~~I~~Ap~e~VW-~~l~Df~~~~~w~P~v~~~~~~~G~~~~vGsvR~~~~~~~~---~~g~~G~~~~~~~~~~Erl~   94 (181)
                      +++.+| ++|+++++ .++.|.+..++|.+.+..+++++-.+..---++.... ..|   ..+  .      ..+.-+..
T Consensus        52 k~e~~i-~~~~~~l~~~l~~d~e~~~~W~~~~~~~~vl~~id~~~~i~y~~~~-p~p~~~vs~--R------D~V~~~~~  121 (209)
T cd08905          52 RLEVVV-DQPLDNLYSELVDRMEQMGEWNPNVKEVKILQRIGKDTLITHEVAA-ETAGNVVGP--R------DFVSVRCA  121 (209)
T ss_pred             EEEEEe-cCCHHHHHHHHHhchhhhceecccchHHHHHhhcCCCceEEEEEec-cCCCCccCc--c------ceEEEEEE
Confidence            356677 99999999 6677999999999999888776522111111233221 011   111  1      13333333


Q ss_pred             EEecCCCeE-EEEEeeccc-------ceeeEEEEEEEEEcCC---ceEEEEEEEEeeCCCCCHHHHHH-HHHHHHHHHHH
Q 030202           95 AINAEEMTL-TYSIVDGNV-------GFYGYVSTLTVAPKEN---GCYIEWKYEVEPVKGWRLEDLDC-FISSGLQVMAR  162 (181)
Q Consensus        95 ~~D~~~~~~-~y~v~~g~~-------p~~~~~~t~~v~p~~~---gT~v~W~~~~~p~~~~~~~~~~~-~~~~gl~~l~~  162 (181)
                      ..+..+..+ ..++.....       ......+-+.|+|.++   +|+|+|.+..+|.+ ..|..+.+ ++....-...+
T Consensus       122 ~~~~~~~~~~~~s~~~~~~P~~~~~VR~~~~~~~w~l~p~~~~~~~t~v~~~~~~DpkG-~iP~~lvN~~~~~~~~~~~~  200 (209)
T cd08905         122 KRRGSTCVLAGMATHFGLMPEQKGFIRAENGPTCIVLRPLAGDPSKTKLTWLLSIDLKG-WLPKSIINQVLSQTQVDFAN  200 (209)
T ss_pred             EEcCCcEEEEEEeecCCCCCCCCCeEEEEeeccEEEEEECCCCCCceEEEEEEeecCCC-CCCHHHHHHHhHHhHHHHHH
Confidence            333333222 222221111       2446677888999864   49999999999974 45544432 23444444444


Q ss_pred             HHHHHH
Q 030202          163 RMKEAL  168 (181)
Q Consensus       163 ~le~~~  168 (181)
                      .|++++
T Consensus       201 ~Lr~~~  206 (209)
T cd08905         201 HLRQRM  206 (209)
T ss_pred             HHHHHH
Confidence            455544

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in

>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins

Probab=97.58  E-value=0.0091  Score=49.06  Aligned_cols=138  Identities=10%  Similarity=0.102  Sum_probs=80.4

Q ss_pred             EEEEEEeCCCHHHHHHHHhccCCcccccccceeEEEecCCCCCCceEEEEeeeecCCCCCCCCCcCccceEEEEEEE--E
Q 030202           19 RACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLA--I   96 (181)
Q Consensus        19 ~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~G~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~--~   96 (181)
                      ++..++ ++|+++++++|.|....++|.+.+.++++++--+...+-++...-...|...  .      ..+.-+-..  .
T Consensus        80 k~e~~v-d~s~~~v~dlL~D~~~R~~WD~~~~e~evI~~id~d~~iyy~~~p~PwPvk~--R------DfV~~~s~~~~~  150 (235)
T cd08873          80 CVELKV-QTCASDAFDLLSDPFKRPEWDPHGRSCEEVKRVGEDDGIYHTTMPSLTSEKP--N------DFVLLVSRRKPA  150 (235)
T ss_pred             EEEEEe-cCCHHHHHHHHhCcchhhhhhhcccEEEEEEEeCCCcEEEEEEcCCCCCCCC--c------eEEEEEEEEecc
Confidence            556668 9999999999999999999999999998876222223334433211112111  1      123322222  1


Q ss_pred             ecCC-CeEEEEEeecc--------cceeeEEEEEEEEEcCC-ceEEEEEEEEeeCC----CCCHHHHHHHHHHHHHHHHH
Q 030202           97 NAEE-MTLTYSIVDGN--------VGFYGYVSTLTVAPKEN-GCYIEWKYEVEPVK----GWRLEDLDCFISSGLQVMAR  162 (181)
Q Consensus        97 D~~~-~~~~y~v~~g~--------~p~~~~~~t~~v~p~~~-gT~v~W~~~~~p~~----~~~~~~~~~~~~~gl~~l~~  162 (181)
                      +... ..+...-+..+        .....+.+-+.+.|.++ +|.|++....+|.-    .-...++...|...+..+.+
T Consensus       151 ~~~~~~~I~~~SV~h~~~Pp~kgyVR~~~~~ggW~I~p~~~~~t~VtY~~~~dPg~~~~~~~~~~~~~~~~~~~~~~~~~  230 (235)
T cd08873         151 TDGDPYKVAFRSVTLPRVPQTPGYSRTEVACAGFVIRQDCGTCTEVSYYNETNPKLLSYVTCNLAGLSALYCRTFHCCEQ  230 (235)
T ss_pred             CCCCeEEEEEeeeecccCCCCCCeEEEEEEeeeEEEEECCCCcEEEEEEEEcCCCccceeeecchhhhHHHHHHHHHHHH
Confidence            2211 23343334311        13557788899999986 59999999999831    01223344444445555554


Q ss_pred             HHH
Q 030202          163 RMK  165 (181)
Q Consensus       163 ~le  165 (181)
                      .|+
T Consensus       231 ~~~  233 (235)
T cd08873         231 FLV  233 (235)
T ss_pred             Hhc
Confidence            443

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an

>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins

Probab=97.56  E-value=0.017  Score=46.23  Aligned_cols=147  Identities=16%  Similarity=0.148  Sum_probs=87.9

Q ss_pred             CeeeEEEEEEeCCCHHHHHHHHhccCCcccccccceeEEEecCCCC-CCceEEEEeeeecCCCCCCCCCcCccceEEEEE
Q 030202           15 KWQGRACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISG-QPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKL   93 (181)
Q Consensus        15 ~w~~~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~G~~~-~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl   93 (181)
                      ...=++..++.++|++.+.+++.|.....+|.+.+..++.++-... +.--++...-...|...  .      ..+--|.
T Consensus        49 ~~~~k~~~~~~~~s~~~~~~~l~D~~~r~~Wd~~~~~~~~le~~~~~~~~i~y~~~~~P~P~s~--R------D~V~~r~  120 (209)
T cd08870          49 LYEYLVRGVFEDCTPELLRDFYWDDEYRKKWDETVIEHETLEEDEKSGTEIVRWVKKFPFPLSD--R------EYVIARR  120 (209)
T ss_pred             ceEEEEEEEEcCCCHHHHHHHHcChhhHhhhhhheeeEEEEEecCCCCcEEEEEEEECCCcCCC--c------eEEEEEE
Confidence            3445666677467999999999999889999999988877653221 12223333221123221  1      1343343


Q ss_pred             EEEe-cCCCeEEEEEeec-------ccceeeEEEEEEEEEc--CC-ceEEEEEEEEeeCCCCCHHHH-HHHHHHHHHHHH
Q 030202           94 LAIN-AEEMTLTYSIVDG-------NVGFYGYVSTLTVAPK--EN-GCYIEWKYEVEPVKGWRLEDL-DCFISSGLQVMA  161 (181)
Q Consensus        94 ~~~D-~~~~~~~y~v~~g-------~~p~~~~~~t~~v~p~--~~-gT~v~W~~~~~p~~~~~~~~~-~~~~~~gl~~l~  161 (181)
                      ...+ +....+....+..       ...+..+.+.+.++|.  ++ +|.+++++..+|.. ..+.-+ ..+...++-.+.
T Consensus       121 ~~~~~~~~~~i~~~sv~~~~~P~~~~vRv~~~~~~~~i~p~~~~~~~t~~~~~~~~dp~G-~IP~wlvN~~~~~~~~~~l  199 (209)
T cd08870         121 LWESDDRSYVCVTKGVPYPSVPRSGRKRVDDYESSLVIRAVKGDGQGSACEVTYFHNPDG-GIPRELAKLAVKRGMPGFL  199 (209)
T ss_pred             EEEcCCCEEEEEEeCCcCCCCCCCCcEEEEEEEeEEEEEEecCCCCceEEEEEEEECCCC-CCCHHHHHHHHHhhhHHHH
Confidence            3344 2222222322322       2236688899999998  54 59999999999853 344444 344666666666


Q ss_pred             HHHHHHHhh
Q 030202          162 RRMKEALQA  170 (181)
Q Consensus       162 ~~le~~~~~  170 (181)
                      +.|.+++.+
T Consensus       200 ~~l~~a~~~  208 (209)
T cd08870         200 KKLENALRK  208 (209)
T ss_pred             HHHHHHHhc
Confidence            667666643

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo

>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins

Probab=97.48  E-value=0.0074  Score=49.59  Aligned_cols=135  Identities=10%  Similarity=0.028  Sum_probs=77.9

Q ss_pred             eeEEEEEEeCCCHHHHHHHHhccCCcccccccceeEEEec--CCCCCCceEEEEeeeec-CCCCCCCCCcCccceEEEEE
Q 030202           17 QGRACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQ--GISGQPGCVRFCAGFKT-PVDNKDDDHEQSVNWTKQKL   93 (181)
Q Consensus        17 ~~~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~--G~~~~vGsvR~~~~~~~-~~~g~~G~~~~~~~~~~Erl   93 (181)
                      .=+++.++ ++|++++.++|.|....++|.+.+.++++++  +++..   ++.+.-... |..+  .      ..+.-+-
T Consensus        79 ~fk~e~~v-dvs~~~l~~LL~D~~~r~~Wd~~~~e~~vI~qld~~~~---vY~~~~pPw~Pvk~--R------D~V~~~s  146 (236)
T cd08914          79 SVWVEKHV-KRPAHLAYRLLSDFTKRPLWDPHFLSCEVIDWVSEDDQ---IYHITCPIVNNDKP--K------DLVVLVS  146 (236)
T ss_pred             EEEEEEEE-cCCHHHHHHHHhChhhhchhHHhhceEEEEEEeCCCcC---EEEEecCCCCCCCC--c------eEEEEEE
Confidence            34556688 9999999999999999999999999998865  32222   455442111 2221  1      0222211


Q ss_pred             EE-EecCC--CeEEEEEeec-ccc-------eee-EEEEEEEEEcCC-ceEEEEEEEEeeCCCCCH------HHHHHHHH
Q 030202           94 LA-INAEE--MTLTYSIVDG-NVG-------FYG-YVSTLTVAPKEN-GCYIEWKYEVEPVKGWRL------EDLDCFIS  154 (181)
Q Consensus        94 ~~-~D~~~--~~~~y~v~~g-~~p-------~~~-~~~t~~v~p~~~-gT~v~W~~~~~p~~~~~~------~~~~~~~~  154 (181)
                      .. ..+.+  ..+.-.-+.. .+|       +.. ..+. .+.|.++ +|.|++....+|  |..+      .++-.-+.
T Consensus       147 ~~~~~~dg~~~~I~~~SVp~~~~Pp~kg~VRv~~~~~G~-~I~pl~~~~~~VtY~~~~dP--g~lp~~~~n~~~~~~~~~  223 (236)
T cd08914         147 RRKPLKDGNTYVVAVKSVILPSVPPSPQYIRSEIICAGF-LIHAIDSNSCTVSYFNQISA--SILPYFAGNLGGWSKSIE  223 (236)
T ss_pred             EEecCCCCCEEEEEEeecccccCCCCCCcEEeEEEEEEE-EEEEcCCCcEEEEEEEEcCC--ccchheEEecchhhhHHH
Confidence            11 12123  2223222322 222       334 4444 7889876 699999999999  3332      33334455


Q ss_pred             HHHHHHHHHHHH
Q 030202          155 SGLQVMARRMKE  166 (181)
Q Consensus       155 ~gl~~l~~~le~  166 (181)
                      ..+.++.+.||.
T Consensus       224 ~~~~~~~~~~~~  235 (236)
T cd08914         224 ETAASCIQFLEN  235 (236)
T ss_pred             HHHHHHHHHHhc
Confidence            555666666553

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114) and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD15/ACOT12 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Rat CACH hydrolyzes acetyl-CoA to acetate and CoA. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. Human STARD15/ACOT12 may have roles in cholesterol metabolism and in beta-oxidation.

>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins

Probab=97.46  E-value=0.024  Score=45.66  Aligned_cols=142  Identities=12%  Similarity=0.146  Sum_probs=75.6

Q ss_pred             EEEEEeCCCHHHHHHHHhccCCcccccccceeEEEecCCCCCCceEEEEeeeecCCCCCCCCCcCccceEEEEEEEEecC
Q 030202           20 ACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLAINAE   99 (181)
Q Consensus        20 v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~G~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~~D~~   99 (181)
                      ++.+|+++|++.+++++.|.+...+|.+.+..+..++.-+..---++...-...|..+  .      ..+.-+...-++.
T Consensus        51 ~~~~~~~~s~e~~~~~l~D~~~r~~Wd~~~~e~~~ie~~d~~~~i~y~~~~~P~pvs~--R------DfV~~r~~~~~~~  122 (222)
T cd08871          51 VSAIFPDVPAETLYDVLHDPEYRKTWDSNMIESFDICQLNPNNDIGYYSAKCPKPLKN--R------DFVNLRSWLEFGG  122 (222)
T ss_pred             EEEEeCCCCHHHHHHHHHChhhhhhhhhhhceeEEEEEcCCCCEEEEEEeECCCCCCC--C------eEEEEEEEEeCCC
Confidence            3455547999999999999988899999998887765222111112222111122221  1      1333333333332


Q ss_pred             CCeE-EEEEeecccc-------eeeEEEEEEEEEcCC-ceEEEEEEEEeeCCCCCHHHHHH-HHHHHHHHHHHHHHHHHh
Q 030202          100 EMTL-TYSIVDGNVG-------FYGYVSTLTVAPKEN-GCYIEWKYEVEPVKGWRLEDLDC-FISSGLQVMARRMKEALQ  169 (181)
Q Consensus       100 ~~~~-~y~v~~g~~p-------~~~~~~t~~v~p~~~-gT~v~W~~~~~p~~~~~~~~~~~-~~~~gl~~l~~~le~~~~  169 (181)
                      ...+ ..++.....|       ...+.+-+.++|.++ +|+|+|....+|.+ ..+.-+.+ +...+.-.+.+.|++++.
T Consensus       123 ~~vi~~~sv~~~~~P~~~g~VR~~~~~~g~~i~p~~~~~t~vt~~~~~Dp~G-~IP~~lvN~~~~~~~~~~l~~l~k~~~  201 (222)
T cd08871         123 EYIIFNHSVKHKKYPPRKGFVRAISLLTGYLIRPTGPKGCTLTYVTQNDPKG-SLPKWVVNKATTKLAPKVMKKLHKAAL  201 (222)
T ss_pred             EEEEEeccccCCCCCCCCCeEEeEEEccEEEEEECCCCCEEEEEEEecCCCC-CcCHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            2122 2222211112       334567788899865 69999999999873 44444432 223333333344444443


Q ss_pred             h
Q 030202          170 A  170 (181)
Q Consensus       170 ~  170 (181)
                      .
T Consensus       202 ~  202 (222)
T cd08871         202 K  202 (222)
T ss_pred             H
Confidence            3

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe

>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins

Probab=97.41  E-value=0.023  Score=45.44  Aligned_cols=142  Identities=15%  Similarity=0.161  Sum_probs=84.4

Q ss_pred             EEEEEeCCCHHHHHHHHhccCCcccccccceeEEEecCCCC-CCceEEEEeeeecCCCCCCCCCcCccceEEEEEEEEec
Q 030202           20 ACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISG-QPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLAINA   98 (181)
Q Consensus        20 v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~G~~~-~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~~D~   98 (181)
                      +..++.++|++.+.+++.|.+...+|.+.+.++++++.... .--.+....-...|...  .      ..+-.|....|+
T Consensus        49 ~~~~~~d~s~~~~~~~~~D~~~r~~Wd~~~~~~~~le~~~~~~~~i~y~~~~~P~P~s~--R------D~V~~r~~~~~~  120 (207)
T cd08911          49 VYGSFDDVTARDFLNVQLDLEYRKKWDATAVELEVVDEDPETGSEIIYWEMQWPKPFAN--R------DYVYVRRYIIDE  120 (207)
T ss_pred             EEEEEcCCCHHHHHHHHhCHHHHHHHHhhheeEEEEEccCCCCCEEEEEEEECCCCCCC--c------cEEEEEEEEEcC
Confidence            43445599999999999999999999999998887753211 11112222111122221  1      155556556666


Q ss_pred             CCCeE---EEEEee-------cccceeeEEEEEEEEEcC----CceEEEEEEEEeeCCCCCHHHHH-HHHHHHHHHHHHH
Q 030202           99 EEMTL---TYSIVD-------GNVGFYGYVSTLTVAPKE----NGCYIEWKYEVEPVKGWRLEDLD-CFISSGLQVMARR  163 (181)
Q Consensus        99 ~~~~~---~y~v~~-------g~~p~~~~~~t~~v~p~~----~gT~v~W~~~~~p~~~~~~~~~~-~~~~~gl~~l~~~  163 (181)
                      ++..+   .+++..       |...+..+.+.+.++|.+    +||.+++.+..+|. |..+.-+. .+...++-.+.+.
T Consensus       121 ~~~~~~i~~~sv~hp~~P~~~g~VRv~~~~~~~~i~p~~~~~~~~~~~~~~~~~dPg-G~IP~~lvN~~~~~~~~~~l~~  199 (207)
T cd08911         121 ENKLIVIVSKAVQHPSYPESPKKVRVEDYWSYMVIRPHKSFDEPGFEFVLTYFDNPG-VNIPSYITSWVAMSGMPDFLER  199 (207)
T ss_pred             CCCEEEEEEecCCCCCCCCCCCCEEEEEeEEEEEEEeCCCCCCCCeEEEEEEEeCCC-CccCHHHHHHHHHhhccHHHHH
Confidence            54331   222221       112366888999999973    47999988887776 44444443 3456666666666


Q ss_pred             HHHHHhh
Q 030202          164 MKEALQA  170 (181)
Q Consensus       164 le~~~~~  170 (181)
                      |++++..
T Consensus       200 l~~a~~~  206 (207)
T cd08911         200 LRNAALK  206 (207)
T ss_pred             HHHHHhc
Confidence            6666543

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.

>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins

Probab=97.39  E-value=0.034  Score=42.57  Aligned_cols=140  Identities=14%  Similarity=0.121  Sum_probs=76.7

Q ss_pred             eeeEEEEEEeCCCHHHHHHHHhccCCcccccccceeEEEecCCCCCCceEEEEee-eecCCCCCCCCCcCccceEEEEEE
Q 030202           16 WQGRACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAG-FKTPVDNKDDDHEQSVNWTKQKLL   94 (181)
Q Consensus        16 w~~~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~G~~~~vGsvR~~~~-~~~~~~g~~G~~~~~~~~~~Erl~   94 (181)
                      ..-+...+| ++|+++|++++.|....++|.|.+..++.++.-+... .+....+ ...|..+        ...+--+-.
T Consensus        39 ~~~k~~~~i-~~~~~~v~~~l~d~~~~~~w~~~~~~~~vl~~~~~~~-~i~~~~~~~p~p~~~--------Rdfv~~~~~  108 (193)
T cd00177          39 KLLKAEGVI-PASPEQVFELLMDIDLRKKWDKNFEEFEVIEEIDEHT-DIIYYKTKPPWPVSP--------RDFVYLRRR  108 (193)
T ss_pred             eeEEEEEEE-CCCHHHHHHHHhCCchhhchhhcceEEEEEEEeCCCe-EEEEEEeeCCCccCC--------ccEEEEEEE
Confidence            344567778 9999999999999999999999999888776322222 2323222 1111111        012222222


Q ss_pred             EEecCCC-eEEEEEeecc-cc-----e--eeEEEEEEEEEcCC-ceEEEEEEEEeeCCCCCHHHH-HHHHHHHHHHHHHH
Q 030202           95 AINAEEM-TLTYSIVDGN-VG-----F--YGYVSTLTVAPKEN-GCYIEWKYEVEPVKGWRLEDL-DCFISSGLQVMARR  163 (181)
Q Consensus        95 ~~D~~~~-~~~y~v~~g~-~p-----~--~~~~~t~~v~p~~~-gT~v~W~~~~~p~~~~~~~~~-~~~~~~gl~~l~~~  163 (181)
                      ..++++. .+...-++.+ .|     +  ..+.+-+.++|.++ +|++++...++|.. ..+..+ ...+......+.+.
T Consensus       109 ~~~~~~~~~~~~~Si~~~~~p~~~~~vR~~~~~~~~~i~~~~~~~~~vt~~~~~D~~g-~iP~~~~~~~~~~~~~~~~~~  187 (193)
T cd00177         109 RKLDDGTYVIVSKSVDHDSHPKEKGYVRAEIKLSGWIIEPLDPGKTKVTYVLQVDPKG-SIPKSLVNSAAKKQLASFLKD  187 (193)
T ss_pred             EEcCCCeEEEEEeecCCCCCCCCCCcEEEEEEccEEEEEECCCCCEEEEEEEeeCCCC-CccHHHHHhhhhhccHHHHHH
Confidence            2233221 2222222221 11     2  23345677889865 59999999999974 333333 33344444444444


Q ss_pred             HHH
Q 030202          164 MKE  166 (181)
Q Consensus       164 le~  166 (181)
                      ++.
T Consensus       188 ~~~  190 (193)
T cd00177         188 LRK  190 (193)
T ss_pred             HHH
Confidence            433

This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro

>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins

Probab=97.38  E-value=0.02  Score=45.97  Aligned_cols=138  Identities=10%  Similarity=0.058  Sum_probs=73.8

Q ss_pred             EEEEEEeCCCHHHHH-HHHhccCCcccccccceeEEEec--CCCCCCceEEEEeeee--cCCCCCCCCCcCccceEEEEE
Q 030202           19 RACEELTGVKAEQIW-AFLEDFFGLDKWFPTLTTCIPIQ--GISGQPGCVRFCAGFK--TPVDNKDDDHEQSVNWTKQKL   93 (181)
Q Consensus        19 ~v~~~I~~Ap~e~VW-~~l~Df~~~~~w~P~v~~~~~~~--G~~~~vGsvR~~~~~~--~~~~g~~G~~~~~~~~~~Erl   93 (181)
                      ++..+| ++|++.++ +++.|.+..++|.+.+.++++++  ++...+  ++.+....  .|..+  .      -.+.-|-
T Consensus        52 k~~~~v-~~~~~~l~~~ll~D~~~~~~W~~~~~~~~vi~~~~~~~~i--~Y~v~~p~~~~pv~~--R------DfV~~r~  120 (209)
T cd08906          52 ILKAFM-QCPAELVYQEVILQPEKMVLWNKTVSACQVLQRVDDNTLV--SYDVAAGAAGGVVSP--R------DFVNVRR  120 (209)
T ss_pred             EEEEEE-cCCHHHHHHHHHhChhhccccCccchhhhheeeccCCcEE--EEEEccccccCCCCC--C------ceEEEEE
Confidence            667788 99999998 58899999999999999988765  222222  22222100  01111  1      1344344


Q ss_pred             EEEecCCCe-EEEEEeecccc-------ee-eEEEEEEEEE-cCC-ceEEEEEEEEeeCCCCCHHHHH-HHHHHHHHHHH
Q 030202           94 LAINAEEMT-LTYSIVDGNVG-------FY-GYVSTLTVAP-KEN-GCYIEWKYEVEPVKGWRLEDLD-CFISSGLQVMA  161 (181)
Q Consensus        94 ~~~D~~~~~-~~y~v~~g~~p-------~~-~~~~t~~v~p-~~~-gT~v~W~~~~~p~~~~~~~~~~-~~~~~gl~~l~  161 (181)
                      ..-+..... +..++....+|       .. ...+.+-..+ .++ +|.++|.+..+|.+ ..|.-+. .++....-...
T Consensus       121 ~~~~~~~~i~~~~sv~~~~~P~~~~~VR~~~~~~G~~i~~~~~~~~~t~vt~~~~~Dp~G-~lP~~lvN~~~~~~~~~~~  199 (209)
T cd08906         121 IERRRDRYVSAGISTTHSHKPPLSKYVRGENGPGGFVVLKSASNPSVCTFIWILNTDLKG-RLPRYLIHQSLAATMFEFA  199 (209)
T ss_pred             EEecCCcEEEEEEEEecCCCCCCCCeEEEeeeccEEEEEECCCCCCceEEEEEEecCCCC-CCCHHHHHHHHHHHHHHHH
Confidence            333333322 23333322222       12 2223333333 344 59999999999974 4554443 33333433444


Q ss_pred             HHHHHHH
Q 030202          162 RRMKEAL  168 (181)
Q Consensus       162 ~~le~~~  168 (181)
                      ..|++++
T Consensus       200 ~~LR~~~  206 (209)
T cd08906         200 SHLRQRI  206 (209)
T ss_pred             HHHHHHH
Confidence            4444444

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.

>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain

Probab=97.24  E-value=0.035  Score=44.09  Aligned_cols=119  Identities=13%  Similarity=0.109  Sum_probs=68.5

Q ss_pred             EEEEEEeCCCHHHHHHHHhccCCcccccccceeEEEecCCCCCCceEEEEeeeecCCCCCCCCCcCccceEEEEEEEEec
Q 030202           19 RACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLAINA   98 (181)
Q Consensus        19 ~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~G~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~~D~   98 (181)
                      +++.+| ++++++|++.+.|..  .+|.+.+.++++++--+..---++...-...|...        ...+.-|....+.
T Consensus        47 K~~~~v-~a~~~~v~~~l~d~r--~~Wd~~~~~~~vie~id~~~~i~y~~~~~p~pv~~--------RDfV~~r~~~~~~  115 (197)
T cd08869          47 RASTEV-EAPPEEVLQRILRER--HLWDDDLLQWKVVETLDEDTEVYQYVTNSMAPHPT--------RDYVVLRTWRTDL  115 (197)
T ss_pred             EEEEEe-CCCHHHHHHHHHHHH--hccchhhheEEEEEEecCCcEEEEEEeeCCCCCCC--------ceEEEEEEEEecC
Confidence            667888 999999999887753  79999999988865221111112222211122111        1134444444333


Q ss_pred             CC--CeEEEEEeec--ccc-----eeeEEEEEEEEEcCC-ceEEEEEEEEeeCCCCCHHHH
Q 030202           99 EE--MTLTYSIVDG--NVG-----FYGYVSTLTVAPKEN-GCYIEWKYEVEPVKGWRLEDL  149 (181)
Q Consensus        99 ~~--~~~~y~v~~g--~~p-----~~~~~~t~~v~p~~~-gT~v~W~~~~~p~~~~~~~~~  149 (181)
                      ++  ..+...-++.  ..|     ...+.+-+.++|.++ +|+|+|....+|. |..+.-+
T Consensus       116 ~~g~~~i~~~Sv~~~~~~p~g~VR~~~~~~g~~i~p~~~~~t~vty~~~~Dp~-G~iP~wl  175 (197)
T cd08869         116 PKGACVLVETSVEHTEPVPLGGVRAVVLASRYLIEPCGSGKSRVTHICRVDLR-GRSPEWY  175 (197)
T ss_pred             CCCcEEEEEECCcCCCCCCCCCEEEEEEeeeEEEEECCCCCeEEEEEEEECCC-CCCCcee
Confidence            22  2333333321  222     345567788999876 5999999999996 3444333

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul

>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family

Probab=97.24  E-value=0.013  Score=46.98  Aligned_cols=138  Identities=12%  Similarity=0.184  Sum_probs=80.6

Q ss_pred             eEEEEEEeCCCHHHHHHHHhccCCcccccccceeEEEecCCCCCCceEEEEee-eecCCCCCCCCCcCccceEEEEEE--
Q 030202           18 GRACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAG-FKTPVDNKDDDHEQSVNWTKQKLL--   94 (181)
Q Consensus        18 ~~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~G~~~~vGsvR~~~~-~~~~~~g~~G~~~~~~~~~~Erl~--   94 (181)
                      =++..+| ++|++.+.+++.|.+.+++|.|.+..+..+...+. --.+-...+ ...|..            -+|-+.  
T Consensus        48 ~k~e~~i-~~~~~~~~~vl~d~~~~~~W~p~~~~~~~l~~~~~-~~~v~y~~~~~PwPv~------------~RD~v~~~  113 (215)
T cd08877          48 LRMEGEI-DGPLFNLLALLNEVELYKTWVPFCIRSKKVKQLGR-ADKVCYLRVDLPWPLS------------NREAVFRG  113 (215)
T ss_pred             EEEEEEe-cCChhHeEEEEehhhhHhhhcccceeeEEEeecCC-ceEEEEEEEeCceEec------------ceEEEEEE
Confidence            3567788 99999999999999999999999888876542211 011111111 011211            122221  


Q ss_pred             ----EEecCCCeEE--EEEee------------------cccceeeEEEEEEEEEcCCc-eEEEEEEEEeeCCCCCHHHH
Q 030202           95 ----AINAEEMTLT--YSIVD------------------GNVGFYGYVSTLTVAPKENG-CYIEWKYEVEPVKGWRLEDL  149 (181)
Q Consensus        95 ----~~D~~~~~~~--y~v~~------------------g~~p~~~~~~t~~v~p~~~g-T~v~W~~~~~p~~~~~~~~~  149 (181)
                          .+++ +..+.  -+-+.                  +...+....+-+.++|.+++ |.+++.+..+|.....|..+
T Consensus       114 ~~~~~~~~-~~~i~i~~~si~~~~~~~~~~~~~iP~~~~~~vR~~~~~~~~~i~p~~~~~t~v~~~~~~DP~g~~IP~~l  192 (215)
T cd08877         114 FGVDRLEE-NGQIVILLKSIDDDPEFLKLTDLDIPSTSAKGVRRIIKYYGFVITPISPTKCYLRFVANVDPKMSLVPKSL  192 (215)
T ss_pred             EEEeeecc-CCCEEEEEecCCCCcccccccCCcCCCCCCCceEEEEecceEEEEEcCCCCeEEEEEEEcCCCcccCCHHH
Confidence                1222 23332  11111                  11124567778889998864 99999999999754355555


Q ss_pred             HH-HHHHHHHHHHHHHHHHHhh
Q 030202          150 DC-FISSGLQVMARRMKEALQA  170 (181)
Q Consensus       150 ~~-~~~~gl~~l~~~le~~~~~  170 (181)
                      .+ +.+.....+...|++++.+
T Consensus       193 iN~~~k~~~~~~~~~l~k~~~~  214 (215)
T cd08877         193 LNFVARKFAGLLFEKIQKAAKN  214 (215)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhc
Confidence            33 3455555666666666543

Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a

>PF10698 DUF2505: Protein of unknown function (DUF2505); InterPro: IPR019639 This entry represents proteins found Actinobacteria and Proteobacteria

Probab=97.20  E-value=0.0069  Score=46.52  Aligned_cols=67  Identities=16%  Similarity=0.172  Sum_probs=40.2

Q ss_pred             ecCCCeEEEEEeecccceeeEEEEEEEEEcCCceEEEEEEEEe---eCCCCCHHHH-HHHHHHHHHHHHHHH
Q 030202           97 NAEEMTLTYSIVDGNVGFYGYVSTLTVAPKENGCYIEWKYEVE---PVKGWRLEDL-DCFISSGLQVMARRM  164 (181)
Q Consensus        97 D~~~~~~~y~v~~g~~p~~~~~~t~~v~p~~~gT~v~W~~~~~---p~~~~~~~~~-~~~~~~gl~~l~~~l  164 (181)
                      ++..++.+|++.-...|++ ..++++|.|.++||++++..+++   |.-|...+.+ ...+...|+...+.+
T Consensus        85 ~~g~~~g~~~~~~~G~P~~-~~G~~~L~~~~~gt~~~~~g~v~v~VPlvGgkiE~~v~~~~~~~~~~e~~~~  155 (159)
T PF10698_consen   85 DDGRRTGTFTVSIPGAPVS-ISGTMRLRPDGGGTRLTVEGEVKVKVPLVGGKIEKAVAENLRKLLEAEQEFT  155 (159)
T ss_pred             CCCeEEEEEEEEecCceEE-EEEEEEEecCCCCEEEEEEEEEEEEEccccHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445556666554445644 68999999988899999998887   4333233322 333444444444333

The function is not known.

>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins

Probab=97.14  E-value=0.055  Score=43.10  Aligned_cols=122  Identities=19%  Similarity=0.218  Sum_probs=69.0

Q ss_pred             eEEEEEEeCCCHHHHHH-HHhccCCcccccccceeEEEecCCCCCCceEEEEeeee--cCCCCCCCCCcCccceEEEEEE
Q 030202           18 GRACEELTGVKAEQIWA-FLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAGFK--TPVDNKDDDHEQSVNWTKQKLL   94 (181)
Q Consensus        18 ~~v~~~I~~Ap~e~VW~-~l~Df~~~~~w~P~v~~~~~~~G~~~~vGsvR~~~~~~--~~~~g~~G~~~~~~~~~~Erl~   94 (181)
                      =+++.+| ++|+++|++ ++.|.+..++|.+.+..+..++.-++..--++.+....  .|..+  .      ..+.-|..
T Consensus        50 ~k~~~~i-~~~~~~v~~~l~~d~~~~~~Wd~~~~~~~~i~~~d~~~~i~y~~~~~~~~~~vs~--R------DfV~~r~~  120 (208)
T cd08868          50 FRLTGVL-DCPAEFLYNELVLNVESLPSWNPTVLECKIIQVIDDNTDISYQVAAEAGGGLVSP--R------DFVSLRHW  120 (208)
T ss_pred             EEEEEEE-cCCHHHHHHHHHcCccccceecCcccceEEEEEecCCcEEEEEEecCcCCCcccc--c------ceEEEEEE
Confidence            3456677 999999986 56799999999999998877652221111122222100  11111  1      13333433


Q ss_pred             EEecCCCeEEEEEeecc-c-------ceeeEEEEEEEEEcCC---ceEEEEEEEEeeCCCCCHHHH
Q 030202           95 AINAEEMTLTYSIVDGN-V-------GFYGYVSTLTVAPKEN---GCYIEWKYEVEPVKGWRLEDL  149 (181)
Q Consensus        95 ~~D~~~~~~~y~v~~g~-~-------p~~~~~~t~~v~p~~~---gT~v~W~~~~~p~~~~~~~~~  149 (181)
                      ..++....+...-++.+ .       ....+.+.+.++|.++   +|.|+|.+..+|. |..|.-+
T Consensus       121 ~~~~~~~~i~~~sv~h~~~P~~~g~VR~~~~~~~~~i~p~~~~~~~t~v~~~~~~Dp~-G~iP~~l  185 (208)
T cd08868         121 GIRENCYLSSGVSVEHPAMPPTKNYVRGENGPGCWILRPLPNNPNKCNFTWLLNTDLK-GWLPQYL  185 (208)
T ss_pred             EecCCeEEEEEEeccCCCCCCCCCeEEEeccccEEEEEECCCCCCceEEEEEEEECCC-CCCccee
Confidence            34443333333333321 1       2335567788899753   4999999999997 3444333

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth

>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins

Probab=97.09  E-value=0.056  Score=43.32  Aligned_cols=124  Identities=13%  Similarity=0.127  Sum_probs=65.7

Q ss_pred             eEEEEEEeCCCHHHHHHHHhccCCc--ccccccceeEEEecCCCCCCceEEEEeeeecCCCCCCCCCcCccceEEEEEEE
Q 030202           18 GRACEELTGVKAEQIWAFLEDFFGL--DKWFPTLTTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLA   95 (181)
Q Consensus        18 ~~v~~~I~~Ap~e~VW~~l~Df~~~--~~w~P~v~~~~~~~G~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~   95 (181)
                      =+++.+| +++++++++++.|..+.  ++|.+.+.++++++--+....-+|...  ..|. +  +. ......+.-+...
T Consensus        48 ~k~e~~i-~~s~~~~~~~l~d~~~~~r~~W~~~~~~~~vle~id~~~~i~~~~~--p~~~-~--~~-vs~RDfV~~~~~~  120 (208)
T cd08903          48 YKGEGIV-YATLEQVWDCLKPAAGGLRVKWDQNVKDFEVVEAISDDVSVCRTVT--PSAA-M--KI-ISPRDFVDVVLVK  120 (208)
T ss_pred             EEEEEEe-cCCHHHHHHHHHhccchhhhhhhhccccEEEEEEecCCEEEEEEec--chhc-C--CC-cCCCceEEEEEEE
Confidence            4567778 99999999999887655  899999999888753222222233311  0110 0  00 0000123322222


Q ss_pred             EecCC-CeEEEEEeecc-cc-----eee----EEEEEEEEEcCC-ceEEEEEEEEeeCCCCCHHHH
Q 030202           96 INAEE-MTLTYSIVDGN-VG-----FYG----YVSTLTVAPKEN-GCYIEWKYEVEPVKGWRLEDL  149 (181)
Q Consensus        96 ~D~~~-~~~~y~v~~g~-~p-----~~~----~~~t~~v~p~~~-gT~v~W~~~~~p~~~~~~~~~  149 (181)
                      ..+++ ..+.+..++.+ .|     ++.    +...++..|.++ +|.|+|.+..+|. |..|..+
T Consensus       121 ~~~d~~i~i~~~sv~h~~~P~~~~~VR~~~~~~g~~~~~~~~~~~~t~v~~~~~~Dpk-G~iP~~l  185 (208)
T cd08903         121 RYEDGTISSNATNVEHPLCPPQAGFVRGFNHPCGCFCEPVPGEPDKTQLVSFFQTDLS-GYLPQTV  185 (208)
T ss_pred             ecCCceEEEeEEeccCCCCCCCCCeEEEeeeccEEEEEECCCCCCceEEEEEEEeccC-CCcCHHH
Confidence            22222 23334334442 22     222    233344444344 5999999999997 4455444

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.

>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins

Probab=97.00  E-value=0.043  Score=45.22  Aligned_cols=112  Identities=10%  Similarity=0.088  Sum_probs=66.8

Q ss_pred             EEEEEEeCCCHHHHHHHHhccCCcccccccceeEEEecCCCCCCceEEEEeeeec--CCCCCCCCCcCccceEEEEEEEE
Q 030202           19 RACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAGFKT--PVDNKDDDHEQSVNWTKQKLLAI   96 (181)
Q Consensus        19 ~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~G~~~~vGsvR~~~~~~~--~~~g~~G~~~~~~~~~~Erl~~~   96 (181)
                      ++..++ ++|+++++++|.|.+..++|.+.+.+|++++-.+..- .+..+.....  |...  .      ..+.-+-..-
T Consensus        84 K~e~~v-d~s~e~v~~lL~D~~~r~~Wd~~~~e~~vIe~id~~~-~vY~v~~~p~~~pvs~--R------DfV~~~s~~~  153 (240)
T cd08913          84 KVEMVV-HVDAAQAFLLLSDLRRRPEWDKHYRSCELVQQVDEDD-AIYHVTSPSLSGHGKP--Q------DFVILASRRK  153 (240)
T ss_pred             EEEEEE-cCCHHHHHHHHhChhhhhhhHhhccEEEEEEecCCCc-EEEEEecCCCCCCCCC--C------eEEEEEEEEe
Confidence            455678 9999999999999999999999999998875222111 2444432111  1111  1      1222221112


Q ss_pred             ecCCC---eEEEEEeecc-c-------ceeeEEEEEEEEEcCCc-eEEEEEEEEee
Q 030202           97 NAEEM---TLTYSIVDGN-V-------GFYGYVSTLTVAPKENG-CYIEWKYEVEP  140 (181)
Q Consensus        97 D~~~~---~~~y~v~~g~-~-------p~~~~~~t~~v~p~~~g-T~v~W~~~~~p  140 (181)
                      +.+..   .+.-..+..+ .       ......+-+.+.|.+++ |+|+|....+|
T Consensus       154 ~~~~g~~yii~~~sv~~P~~Pp~kgyVR~~~~~ggw~i~p~~~~~t~vtY~~~~dP  209 (240)
T cd08913         154 PCDNGDPYVIALRSVTLPTHPPTPEYTRGETLCSGFCIWEESDQLTKVSYYNQATP  209 (240)
T ss_pred             ccCCCccEEEEEEEeecCCCCCCCCcEEeeecccEEEEEECCCCcEEEEEEEEeCC
Confidence            11121   2333333322 2       24467788899998865 99999887777

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of

>COG4276 Uncharacterized conserved protein [Function unknown]

Probab=96.97  E-value=0.098  Score=39.40  Aligned_cols=111  Identities=13%  Similarity=0.053  Sum_probs=69.8

Q ss_pred             EEEeCCCHHHHHHHHhccCCcccccccceeEEEecCCCCCCceEEEEeeeecCCCCCCCCCcCccceEEEEEEE--EecC
Q 030202           22 EELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLA--INAE   99 (181)
Q Consensus        22 ~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~G~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~--~D~~   99 (181)
                      .+| +||.|.||+.-+.-+++...-|--. ..+-+|..-..|+.-....+..+...  |      ..-+-|+++  +|+ 
T Consensus         8 ~~i-~aP~E~VWafhsrpd~lq~LTppw~-VV~p~g~eitqgtri~m~l~pfglp~--~------~tW~Arhte~~~d~-   76 (153)
T COG4276           8 TTI-TAPHEMVWAFHSRPDALQRLTPPWI-VVLPLGSEITQGTRIAMGLTPFGLPA--G------LTWVARHTESGFDN-   76 (153)
T ss_pred             eEe-cCCHHHHhhhhcCccHHHhcCCCcE-EeccCCCcccceeeeeecceeecCCC--C------ceEEEEeeecccCC-
Confidence            456 9999999999887777755444222 22223321122221111111111100  2      145566666  776 


Q ss_pred             CCeEEEEEeecccceeeEEEEEEEEEcCCceEEEEEEEEeeCCC
Q 030202          100 EMTLTYSIVDGNVGFYGYVSTLTVAPKENGCYIEWKYEVEPVKG  143 (181)
Q Consensus       100 ~~~~~y~v~~g~~p~~~~~~t~~v~p~~~gT~v~W~~~~~p~~~  143 (181)
                      ..+|+=..+.+|+|.-+..-+-++.+.+++|.+.=...|++..+
T Consensus        77 ~~~FtDv~i~gPfp~~~WrHtH~F~~egg~TvliD~Vsye~p~g  120 (153)
T COG4276          77 GSRFTDVCITGPFPALNWRHTHNFVDEGGGTVLIDSVSYELPAG  120 (153)
T ss_pred             cceeeeeeecCCccceeeEEEeeeecCCCcEEEEeeEEeeccCc
Confidence            56788888888888667888999999999999999999997644

>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain

Probab=96.85  E-value=0.18  Score=40.54  Aligned_cols=125  Identities=11%  Similarity=0.036  Sum_probs=73.1

Q ss_pred             eEEEEEEeCCCHHHHHHHHhccCCcccccccceeEEEec--CCCCCCceEEEEeeeecCCCCCCCCCcCccceEEEEEEE
Q 030202           18 GRACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQ--GISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLA   95 (181)
Q Consensus        18 ~~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~--G~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~   95 (181)
                      =+++++| ++++++|...+.|-  .++|.+.+..+.+++  ++...++  +...-.+.|...        ...+.-|...
T Consensus        54 ~r~~~~i-~a~~~~vl~~lld~--~~~Wd~~~~e~~vIe~ld~~~~I~--Yy~~~~PwP~~~--------RD~V~~Rs~~  120 (204)
T cd08908          54 WRTTIEV-PAAPEEILKRLLKE--QHLWDVDLLDSKVIEILDSQTEIY--QYVQNSMAPHPA--------RDYVVLRTWR  120 (204)
T ss_pred             EEEEEEe-CCCHHHHHHHHHhh--HHHHHHHhhheEeeEecCCCceEE--EEEccCCCCCCC--------cEEEEEEEEE
Confidence            3456677 99999999988766  689999988887764  3222232  222111123211        1144444443


Q ss_pred             EecCCCeEEEE---Eeecccc-----eeeEEEEEEEEEcCC-ceEEEEEEEEeeCCCCCHHHHHHHHHHH
Q 030202           96 INAEEMTLTYS---IVDGNVG-----FYGYVSTLTVAPKEN-GCYIEWKYEVEPVKGWRLEDLDCFISSG  156 (181)
Q Consensus        96 ~D~~~~~~~y~---v~~g~~p-----~~~~~~t~~v~p~~~-gT~v~W~~~~~p~~~~~~~~~~~~~~~g  156 (181)
                      .+..+..+.-.   +.....|     +..+.+.+.++|.++ +|+|++....+|. |..+.-+.+.+...
T Consensus       121 ~~~~~g~~~I~~~Sv~h~~~P~~~VR~~~~~~~w~i~P~g~g~t~vtyi~~~DPg-G~iP~W~~N~~g~~  189 (204)
T cd08908         121 TNLPKGACALLATSVDHDRAPVAGVRVNVLLSRYLIEPCGSGKSKLTYMCRIDLR-GHMPEWYTKSFGHL  189 (204)
T ss_pred             EeCCCCeEEEEEeecCcccCCcCceEEEEEeeEEEEEECCCCcEEEEEEEEeCCC-CCCcHHHHhhHHHH
Confidence            33333333222   2222223     335677788999886 5999999999997 45665555544433

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.

>smart00234 START in StAR and phosphatidylcholine transfer protein

Probab=96.75  E-value=0.19  Score=39.43  Aligned_cols=144  Identities=17%  Similarity=0.233  Sum_probs=79.6

Q ss_pred             CCeeeEEEEEEeCCCHHHHH-HHHhccCCcccccccceeEEEecCCCCCCceEEEEee-eec-CCCCCCCCCcCccceEE
Q 030202           14 PKWQGRACEELTGVKAEQIW-AFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAG-FKT-PVDNKDDDHEQSVNWTK   90 (181)
Q Consensus        14 ~~w~~~v~~~I~~Ap~e~VW-~~l~Df~~~~~w~P~v~~~~~~~G~~~~vGsvR~~~~-~~~-~~~g~~G~~~~~~~~~~   90 (181)
                      +.-.=++...| +++++++. +++.|....++|.+.+..++.++--+.. ..+..... ... |..+  .      ..+-
T Consensus        43 ~~~~~k~~~~v-~~~~~~~~~~~~~d~~~r~~Wd~~~~~~~~ie~~~~~-~~i~~~~~~~~~~p~~~--R------Dfv~  112 (206)
T smart00234       43 PGEASRAVGVV-PMVCADLVEELMDDLRYRPEWDKNVAKAETLEVIDNG-TVIYHYVSKFVAGPVSP--R------DFVF  112 (206)
T ss_pred             ceEEEEEEEEE-ecChHHHHHHHHhcccchhhCchhcccEEEEEEECCC-CeEEEEEEecccCcCCC--C------eEEE
Confidence            34555677788 99999855 5788999999999999988776522211 13333322 111 2221  1      1333


Q ss_pred             EEEEEEecC-CCeEEEEEeecc-c-------ceeeEEEEEEEEEcCCc-eEEEEEEEEeeCCCCCHHHH-HHHHHHHHHH
Q 030202           91 QKLLAINAE-EMTLTYSIVDGN-V-------GFYGYVSTLTVAPKENG-CYIEWKYEVEPVKGWRLEDL-DCFISSGLQV  159 (181)
Q Consensus        91 Erl~~~D~~-~~~~~y~v~~g~-~-------p~~~~~~t~~v~p~~~g-T~v~W~~~~~p~~~~~~~~~-~~~~~~gl~~  159 (181)
                      -|-...++. ...+..+.+..+ .       ....+.+-+.++|.+++ |+|+|....+|.+ ..+..+ ..++..+.-.
T Consensus       113 ~r~~~~~~~~~~vi~~~Sv~~~~~p~~~~~VR~~~~~~~~~i~p~~~~~t~vt~~~~~D~~G-~iP~~lvn~~~~~~~~~  191 (206)
T smart00234      113 VRYWRELVDGSYAVVDVSVTHPTSPPTSGYVRAENLPSGLLIEPLGNGPSKVTWVSHADLKG-WLPHWLVRSLIKSGLAE  191 (206)
T ss_pred             EEEEEEcCCCcEEEEEEECCCCCCCCCCCceEEEEeceEEEEEECCCCCeEEEEEEEEecCC-CccceeehhhhhhhHHH
Confidence            333333332 223333223222 1       13456778889998875 9999999999874 333333 2333444444


Q ss_pred             HHHHHHHHH
Q 030202          160 MARRMKEAL  168 (181)
Q Consensus       160 l~~~le~~~  168 (181)
                      +.+.+.+++
T Consensus       192 ~~~~~~~~~  200 (206)
T smart00234      192 FAKTWVATL  200 (206)
T ss_pred             HHHHHHHHH
Confidence            444444433

putative lipid-binding domain in StAR and phosphatidylcholine transfer protein

>PF08982 DUF1857: Domain of unknown function (DUF1857); InterPro: IPR015075 This protein has no known function

Probab=96.53  E-value=0.16  Score=38.81  Aligned_cols=121  Identities=16%  Similarity=0.179  Sum_probs=64.7

Q ss_pred             CCCHHHHHHHH-hccCCcccccccceeEEEecCCCCCCceEEEEeeeecCCCCCCCCCcCccceEEEEEEEEecCCCeEE
Q 030202           26 GVKAEQIWAFL-EDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLAINAEEMTLT  104 (181)
Q Consensus        26 ~Ap~e~VW~~l-~Df~~~~~w~P~v~~~~~~~G~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~~D~~~~~~~  104 (181)
                      ....++||.-| .-..+-..|.|++.+|++++..+  ..-.|.+.+      |  +      ..++|+++.+.  ...+.
T Consensus        17 ~LTr~QlW~GL~~kar~p~~Fvp~i~~c~Vl~e~~--~~~~R~v~f------g--~------~~v~E~v~~~~--~~~V~   78 (149)
T PF08982_consen   17 VLTREQLWRGLVLKARNPQLFVPGIDSCEVLSESD--TVLTREVTF------G--G------ATVRERVTLYP--PERVD   78 (149)
T ss_dssp             ---HHHHHHHHHHHHH-GGGT-TT--EEEEEEE-S--SEEEEEEEE------T--T------EEEEEEEEEET--TTEEE
T ss_pred             ccCHHHHHHHHHHHHhChhhCccccCeEEEEecCC--CeEEEEEEE------C--C------cEEEEEEEEeC--CcEEE
Confidence            45678999854 45566678899999999986432  346788887      2  2      17999988764  46888


Q ss_pred             EEEeecccceeeEEEEEEEEEcCCc-eEEEEEEEEe-e-CCCCCH------HHHHHHHHHHHHHHHHHHHHHHhh
Q 030202          105 YSIVDGNVGFYGYVSTLTVAPKENG-CYIEWKYEVE-P-VKGWRL------EDLDCFISSGLQVMARRMKEALQA  170 (181)
Q Consensus       105 y~v~~g~~p~~~~~~t~~v~p~~~g-T~v~W~~~~~-p-~~~~~~------~~~~~~~~~gl~~l~~~le~~~~~  170 (181)
                      |....      +-.-++.+...++| =.+++.++.. | ....++      +.....|+.+...-.+.+.+.+..
T Consensus        79 f~~~~------Gs~lt~~I~e~~~g~L~ltf~ye~~~p~~~~gs~e~~~~~~~~~~ay~~a~~~Ti~~iRe~~~~  147 (149)
T PF08982_consen   79 FAQHD------GSSLTNIISEPEPGDLFLTFTYEWRLPGVEPGSPEAKAYQEFYKSAYKEADIDTIRVIRELAKE  147 (149)
T ss_dssp             ESSSB------EEEEEEEEEEEETTEEEEEEEEEEE----S---------BHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred             EEcCC------CCEEEEEEecCCCCcEEEEEEEEecccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            82111      12334444433344 4455555554 3 111111      223566777776666666666544

It is found in various hypothetical bacterial and fungal proteins. ; PDB: 2FFS_B.

>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins

Probab=96.31  E-value=0.2  Score=40.06  Aligned_cols=143  Identities=12%  Similarity=0.105  Sum_probs=81.8

Q ss_pred             eeEEEEEEeCCCHHHHHHHHhccCCcccccccceeEEEecCCCCCCceEEEEeeeecCCCCCCCCCcCccceE-EEEEEE
Q 030202           17 QGRACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWT-KQKLLA   95 (181)
Q Consensus        17 ~~~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~G~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~-~Erl~~   95 (181)
                      .=++..++.+++++.+.+++.|.+...+|.+.+.+......++..+  ++...-...|..+  .      ..+ ..+...
T Consensus        50 ~~k~~~~~~~~s~~~~~~~l~D~~~r~~Wd~~~~~~~~~~~~~~~i--~y~~~k~PwPvs~--R------D~V~~r~~~~  119 (207)
T cd08910          50 EYKVFGVLEDCSPSLLADVYMDLEYRKQWDQYVKELYEKECDGETV--IYWEVKYPFPLSN--R------DYVYIRQRRD  119 (207)
T ss_pred             EEEEEEEEcCCCHHHHHHHHhCHHHHHHHHHHHHhheeecCCCCEE--EEEEEEcCCCCCC--c------eEEEEEEecc
Confidence            4456677723899999999999999999999876632222222112  2221111122221  1      122 112223


Q ss_pred             EecCCCeEE---EEEeecc--------cceeeEEEEEEEEEcCC-ceEEEEEEEEeeCCCCCHHHHH-HHHHHHHHHHHH
Q 030202           96 INAEEMTLT---YSIVDGN--------VGFYGYVSTLTVAPKEN-GCYIEWKYEVEPVKGWRLEDLD-CFISSGLQVMAR  162 (181)
Q Consensus        96 ~D~~~~~~~---y~v~~g~--------~p~~~~~~t~~v~p~~~-gT~v~W~~~~~p~~~~~~~~~~-~~~~~gl~~l~~  162 (181)
                      ++.++..+.   ...++.+        ..+..+.+.+.++|.++ +|.+++....+|. |..|.-+. .+...++..+.+
T Consensus       120 ~~~~~~~~~iv~~~s~~~p~~P~~~~~VRv~~~~~~~~i~p~~~~~t~i~~~~~~DPg-G~IP~wlvN~~~~~~~~~~l~  198 (207)
T cd08910         120 LDVEGRKIWVILARSTSLPQLPEKPGVIRVKQYKQSLAIESDGKKGSKVFMYYFDNPG-GMIPSWLINWAAKNGVPNFLK  198 (207)
T ss_pred             ccCCCCeEEEEEecCCCCCCCCCCCCCEEEEEEEEEEEEEeCCCCceEEEEEEEeCCC-CcchHHHHHHHHHHhhHHHHH
Confidence            443332211   1122221        23668899999999875 6999999999996 44554443 445666667777


Q ss_pred             HHHHHHhh
Q 030202          163 RMKEALQA  170 (181)
Q Consensus       163 ~le~~~~~  170 (181)
                      .|..++..
T Consensus       199 ~l~ka~~~  206 (207)
T cd08910         199 DMQKACQN  206 (207)
T ss_pred             HHHHHHhc
Confidence            77776643

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.

>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins

Probab=95.97  E-value=0.61  Score=36.97  Aligned_cols=142  Identities=12%  Similarity=0.029  Sum_probs=74.8

Q ss_pred             EEEEEEeCCCHHHHHHHHhc--cCCcccccccceeEEEecCCCCCCceEEEEeeeecCCCCCCCCCcCccceEE-EEEEE
Q 030202           19 RACEELTGVKAEQIWAFLED--FFGLDKWFPTLTTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTK-QKLLA   95 (181)
Q Consensus        19 ~v~~~I~~Ap~e~VW~~l~D--f~~~~~w~P~v~~~~~~~G~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~-Erl~~   95 (181)
                      +++.+| ++++++|.+++.|  .....+|.+.+..+.+++.-+.  . ....... .|...- +. ......+. +....
T Consensus        49 k~~~~i-~~~~~~v~~~l~d~~~~~r~~Wd~~~~~~~~le~id~--~-~~i~~~~-~p~~~~-~~-vs~RDfV~~~~~~~  121 (206)
T cd08867          49 RAEGIV-DALPEKVIDVIIPPCGGLRLKWDKSLKHYEVLEKISE--D-LCVGRTI-TPSAAM-GL-ISPRDFVDLVYVKR  121 (206)
T ss_pred             EEEEEE-cCCHHHHHHHHHhcCccccccccccccceEEEEEeCC--C-eEEEEEE-cccccc-Cc-cCCcceEEEEEEEE
Confidence            567778 9999999999988  6677999999999888753221  1 1111110 110000 00 00001221 22233


Q ss_pred             EecCCCeEEEEEeeccc--c------eeeEEEEEEEEEcC---CceEEEEEEEEeeCCCCCHHHHH-HHHHHHHHHHHHH
Q 030202           96 INAEEMTLTYSIVDGNV--G------FYGYVSTLTVAPKE---NGCYIEWKYEVEPVKGWRLEDLD-CFISSGLQVMARR  163 (181)
Q Consensus        96 ~D~~~~~~~y~v~~g~~--p------~~~~~~t~~v~p~~---~gT~v~W~~~~~p~~~~~~~~~~-~~~~~gl~~l~~~  163 (181)
                      ++.....+....++.+.  |      .....+-+-+.|.+   ++|.++|.+.++|.+ ..|.-+. ..+..++....+.
T Consensus       122 ~~~~~~~i~~~Sv~hp~~p~~~~~VR~~~~~~g~~i~p~~~~~~~t~~~~~~~~DpkG-~iP~~lvn~~~~~~~~~~~~~  200 (206)
T cd08867         122 YEDNQWSSSGKSVDIPERPPTPGFVRGYNHPCGYFCSPLKGSPDKSFLVLYVQTDLRG-MIPQSLVESAMPSNLVNFYTD  200 (206)
T ss_pred             eCCCeEEEEEEeccCCCCCCCCCcEEEEeecCEEEEEECCCCCCceEEEEEEEeccCC-CCcHHHHHhhhhhhHHHHHHH
Confidence            33322223333332221  1      22334445567654   359999999999984 4444443 3455555555555


Q ss_pred             HHHHH
Q 030202          164 MKEAL  168 (181)
Q Consensus       164 le~~~  168 (181)
                      |++++
T Consensus       201 lr~~~  205 (206)
T cd08867         201 LVKGV  205 (206)
T ss_pred             HHHhc
Confidence            65543

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression

>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins

Probab=95.51  E-value=1  Score=36.18  Aligned_cols=141  Identities=9%  Similarity=-0.055  Sum_probs=78.6

Q ss_pred             eEEEEEEeCCCHHHHHHHHhccCCcccccccceeEEEec--CCCCCCceEEEEeeeecCCCCCCCCCcCccceEEEEEE-
Q 030202           18 GRACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQ--GISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLL-   94 (181)
Q Consensus        18 ~~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~--G~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl~-   94 (181)
                      -+++.+| +++++++|+++.+-....+|.+.+..+.+++  +.+.-+.-.+.-..   +  +  +. ......+.-|-. 
T Consensus        48 ~k~egvi-~~~~e~v~~~l~~~e~r~~Wd~~~~~~~iie~Id~~T~I~~~~~~~~---~--~--~~-vspRDfV~vr~~~  118 (204)
T cd08904          48 YRVEGII-PESPAKLIQFMYQPEHRIKWDKSLQVYKMLQRIDSDTFICHTITQSF---A--M--GS-ISPRDFVDLVHIK  118 (204)
T ss_pred             EEEEEEe-cCCHHHHHHHHhccchhhhhcccccceeeEEEeCCCcEEEEEecccc---c--C--Cc-ccCceEEEEEEEE
Confidence            3567888 9999999999988777799999988887765  32222221111110   0  0  00 000012332222 


Q ss_pred             EEecCCCeEEEEEeeccc--cee------eEEEEEEEEEcCC---ceEEEEEEEEeeCCCCCHHHH-HHHHHHHHHHHHH
Q 030202           95 AINAEEMTLTYSIVDGNV--GFY------GYVSTLTVAPKEN---GCYIEWKYEVEPVKGWRLEDL-DCFISSGLQVMAR  162 (181)
Q Consensus        95 ~~D~~~~~~~y~v~~g~~--p~~------~~~~t~~v~p~~~---gT~v~W~~~~~p~~~~~~~~~-~~~~~~gl~~l~~  162 (181)
                      .++.....+.+..++.+.  |-+      .+.+=+-+.|.++   +|.++|-+..+|. |..|..+ ..++...+-.+..
T Consensus       119 r~~~~~~ii~~~sv~Hp~~Pp~~g~VRa~n~~~G~~i~pl~~~p~~t~l~~~~~~Dlk-G~lP~~vv~~~~~~~~~~f~~  197 (204)
T cd08904         119 RYEGNMNIVSSVSVEYPQCPPSSNYIRGYNHPCGYVCSPLPENPAYSKLVMFVQPELR-GNLSRSVIEKTMPTNLVNLIL  197 (204)
T ss_pred             EeCCCEEEEEEEecccCCCCCCCCcEEEeeeccEEEEEECCCCCCceEEEEEEEeCCC-CCCCHHHHHHHhHHHHHHHHH
Confidence            234323233344444432  222      3334456778753   5999999999987 5555444 3445666666666


Q ss_pred             HHHHHH
Q 030202          163 RMKEAL  168 (181)
Q Consensus       163 ~le~~~  168 (181)
                      .|++++
T Consensus       198 ~~~~~~  203 (204)
T cd08904         198 DAKDGI  203 (204)
T ss_pred             HHHHhc
Confidence            666543

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.

>KOG3177 consensus Oligoketide cyclase/lipid transport protein [Lipid transport and metabolism]

Probab=94.61  E-value=0.69  Score=37.32  Aligned_cols=100  Identities=13%  Similarity=0.239  Sum_probs=63.1

Q ss_pred             eCCCHHHHHHHHhccCCcccccccceeEEEecCCCCCCc-eEEEEeeeecCCCCCCCCCcCccceEEEEEEEEecCCCeE
Q 030202           25 TGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPG-CVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLAINAEEMTL  103 (181)
Q Consensus        25 ~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~G~~~~vG-svR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~~D~~~~~~  103 (181)
                      +..+++.++.++++...+.++.|.++++.+..-.++++- +--.+.+  .| ..         ....-+++-.++   .+
T Consensus        76 igysp~~my~vVS~V~~Y~~FVPwC~kS~V~~~~P~~~~kA~LeVGF--k~-l~---------E~y~S~Vt~~~p---~l  140 (227)
T KOG3177|consen   76 IGYSPSEMYSVVSNVSEYHEFVPWCKKSDVTSRRPSGPLKADLEVGF--KP-LD---------ERYTSNVTCVKP---HL  140 (227)
T ss_pred             hCCCHHHHHHHHHhHHHhhccccceeccceeecCCCCCceeeEEecC--cc-cc---------hhheeeeEEecc---cc
Confidence            499999999999999999999999999988653323322 2222222  11 11         133444444333   34


Q ss_pred             EEEEe-ecccceeeEEEEEEEEEcCC--c-eEEEEEEEEee
Q 030202          104 TYSIV-DGNVGFYGYVSTLTVAPKEN--G-CYIEWKYEVEP  140 (181)
Q Consensus       104 ~y~v~-~g~~p~~~~~~t~~v~p~~~--g-T~v~W~~~~~p  140 (181)
                      ++.+. ++.+ +......+++.|..+  + |.|.....|+-
T Consensus       141 ~kt~~~d~rL-F~~L~t~Wsf~pg~~~p~tc~ldf~v~FeF  180 (227)
T KOG3177|consen  141 TKTVCADGRL-FNHLITIWSFKPGPNIPRTCTLDFSVSFEF  180 (227)
T ss_pred             eEEeeccccH-HHhhhheeeeccCCCCCCeEEEEEEEEEEe
Confidence            44444 3433 334566788998773  4 99999988774

>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains

Probab=94.19  E-value=2.6  Score=34.46  Aligned_cols=141  Identities=14%  Similarity=0.149  Sum_probs=77.5

Q ss_pred             eEEEEEEeCCCHHHHHHHHhccCCcccccccceeEEEec--CCCCCCceEEEEeeeecCCCCCCCCCcCccceEE-EEEE
Q 030202           18 GRACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQ--GISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTK-QKLL   94 (181)
Q Consensus        18 ~~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~--G~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~-Erl~   94 (181)
                      -++..+|.+++++.+.+++.|.+...+|...+.++.+++  +++..++  +...-...|...  .      -.+. -.+.
T Consensus        54 ~Ka~~~v~~vt~~~~~~~l~D~~~r~~Wd~~~~~~~vie~l~~~~~I~--Y~~~k~PwPvs~--R------D~V~~~~~~  123 (235)
T cd08872          54 LKATHAVKGVTGHEVCHYFFDPDVRMDWETTLENFHVVETLSQDTLIF--HQTHKRVWPAAQ--R------DALFVSHIR  123 (235)
T ss_pred             EEEEEEECCCCHHHHHHHHhChhhHHHHHhhhheeEEEEecCCCCEEE--EEEccCCCCCCC--c------EEEEEEEEE
Confidence            467777823999999999999999999999988887664  2221221  221111123221  1      0222 2223


Q ss_pred             EEecCC--------CeEEEEEeeccccee-eEE-EE-----------------EEEEEcCCceEEEEEEEEeeCCCCCHH
Q 030202           95 AINAEE--------MTLTYSIVDGNVGFY-GYV-ST-----------------LTVAPKENGCYIEWKYEVEPVKGWRLE  147 (181)
Q Consensus        95 ~~D~~~--------~~~~y~v~~g~~p~~-~~~-~t-----------------~~v~p~~~gT~v~W~~~~~p~~~~~~~  147 (181)
                      ..++..        -.+..++.-...|.+ +|. +.                 +.++|.+++|.|+|....+|.+ ..|.
T Consensus       124 ~~~d~~~~~~~~~~vii~~Sv~h~~~P~~~g~VRv~~~~~~~~~~~i~~~~g~~~~t~~~~~~~ity~~~~dPgG-~iP~  202 (235)
T cd08872         124 KIPALEEPNAHDTWIVCNFSVDHDSAPLNNKCVRAKLTVAMICQTFVSPPDGNQEITRDNILCKITYVANVNPGG-WAPA  202 (235)
T ss_pred             ecCccccccCCCeEEEEEecccCccCCCCCCeEEEEEEeeeeeeeeeecCCCcccccCCCCeEEEEEEEEeCCCC-CccH
Confidence            333311        113333332222322 221 11                 2344522359999999999974 4444


Q ss_pred             HH-HHHHHHHHHHHHHHHHHHHh
Q 030202          148 DL-DCFISSGLQVMARRMKEALQ  169 (181)
Q Consensus       148 ~~-~~~~~~gl~~l~~~le~~~~  169 (181)
                      -+ +.+++...-.+.++|.++++
T Consensus       203 wvvn~~~k~~~P~~l~~~~~~~~  225 (235)
T cd08872         203 SVLRAVYKREYPKFLKRFTSYVQ  225 (235)
T ss_pred             HHHHHHHHhhchHHHHHHHHHHH
Confidence            44 45577777777777777754

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD11 and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD11 can mediate transfer of the natural ceramide isomers, dihydroceramide and phytoceramide, as well as ceramides having C14, C16, C18, and C20 chains. They can also transfer diacylglycerol, but with a lower efficiency. STARD11 is synthesized from two major transcripts: a larger one encoding Goodpasture antigen-binding protein (GPBP)/ceramide transporter long form (CERTL); and a smaller one encoding GPBPdelta26/CERT, which is deleted for 26 amino acids. Both splicing variants mediate ceramide transfer from the ER to the Golg

>cd08863 SRPBCC_DUF1857 DUF1857, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily

Probab=93.44  E-value=2.6  Score=31.96  Aligned_cols=90  Identities=16%  Similarity=0.203  Sum_probs=56.8

Q ss_pred             CCHHHHHH-HHhccCCcccccccceeEEEecCCCCCCceEEEEeeeecCCCCCCCCCcCccceEEEEEEEEecCCCeEEE
Q 030202           27 VKAEQIWA-FLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLAINAEEMTLTY  105 (181)
Q Consensus        27 Ap~e~VW~-~l~Df~~~~~w~P~v~~~~~~~G~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~~D~~~~~~~y  105 (181)
                      -..+++|. ++.-..+-..+.|++.+|++++..++  --.|.+.+     .+         ..++|+++...  ...+.|
T Consensus        17 LTr~QlW~GL~~kar~p~~Fvp~i~~c~Vl~e~~~--~l~Rel~f-----~~---------~~v~e~vt~~~--~~~v~f   78 (141)
T cd08863          17 LTRAQLWRGLVLRAREPQLFVPGLDRCEVLSESGT--VLERELTF-----GP---------AKIRETVTLEP--PSRVHF   78 (141)
T ss_pred             cCHHHHHhHHHhhhCCchhcccccceEEEEecCCC--EEEEEEEE-----CC---------ceEEEEEEecC--CcEEEE
Confidence            46789998 44566666778899999999875432  34688887     11         17899988653  478889


Q ss_pred             EEeecccceeeEEEEEEEEEcCCc-eEEEEEEEEe
Q 030202          106 SIVDGNVGFYGYVSTLTVAPKENG-CYIEWKYEVE  139 (181)
Q Consensus       106 ~v~~g~~p~~~~~~t~~v~p~~~g-T~v~W~~~~~  139 (181)
                      .+..+.     -.-++.+....+| =.+++.++..
T Consensus        79 ~~~~~g-----~~l~~~iee~~~g~L~lrf~ye~~  108 (141)
T cd08863          79 LQADAG-----GTLTNTIEEPEDGALYLRFVYETT  108 (141)
T ss_pred             EecCCC-----CeEEEEeccCCCCcEEEEEEEEec
Confidence            866511     1223333332345 4455555554

Uncharacterized family of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins

>cd08902 START_STARD4-like Lipid-binding START domain of mammalian STARD4 and related proteins

Probab=91.34  E-value=6.6  Score=31.61  Aligned_cols=140  Identities=14%  Similarity=0.049  Sum_probs=74.4

Q ss_pred             eEEEEEEeCCCHHHHHHHHhccCCcccccccceeEEEecCCCCCCceE-EEEeeeecCCCCCCCCCcCccceEE-EEEEE
Q 030202           18 GRACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCV-RFCAGFKTPVDNKDDDHEQSVNWTK-QKLLA   95 (181)
Q Consensus        18 ~~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~G~~~~vGsv-R~~~~~~~~~~g~~G~~~~~~~~~~-Erl~~   95 (181)
                      =+.+..| +..+++||+.+.+-....+|.|.+..+.+++--+... +| |..+..  + .+  |. ..+...+. -++..
T Consensus        49 ~R~Egvv-~~~~~ev~d~v~~~~~r~~Wd~~v~~~~Iie~Id~dt-~I~~yvt~~--~-~~--~i-ISpRDFVdv~~~~~  120 (202)
T cd08902          49 YKAQGVV-EDVYNRIVDHIRPGPYRLDWDSLMTSMDIIEEFEENC-CVMRYTTAG--Q-LL--NI-ISPREFVDFSYTTQ  120 (202)
T ss_pred             EEEEEEe-cCCHHHHHHHHhcccchhcccchhhheeHhhhhcCCc-EEEEEEccc--C-Cc--Cc-cCccceEEEEEEEE
Confidence            3566777 8999999999998777789999999998876211111 22 333320  0 11  10 00000111 11222


Q ss_pred             EecCCCeEEE--EEeecccc---ee--eEEEEEEEEEcCC---ceEEEEEEEEeeCCCCCHHHH-HHHHHHHHHHHHHHH
Q 030202           96 INAEEMTLTY--SIVDGNVG---FY--GYVSTLTVAPKEN---GCYIEWKYEVEPVKGWRLEDL-DCFISSGLQVMARRM  164 (181)
Q Consensus        96 ~D~~~~~~~y--~v~~g~~p---~~--~~~~t~~v~p~~~---gT~v~W~~~~~p~~~~~~~~~-~~~~~~gl~~l~~~l  164 (181)
                      +.+ ++ ++=  ++.-.+.|   ++  ++-.-+-+.|.++   .|.++|-+.+++. |..+..+ ..++-..+-.+...|
T Consensus       121 ~~d-~~-~s~gvs~~~~~~ppg~VRgen~p~g~i~~Pl~~~p~k~~~t~~lq~DLk-G~LPqsiIdq~~~~~~~~F~~~L  197 (202)
T cd08902         121 YED-GL-LSCGVSIEYEEARPNFVRGFNHPCGWFCVPLKDNPSHSLLTGYIQTDLR-GMLPQSAVDTAMASTLVNFYSDL  197 (202)
T ss_pred             eCC-Ce-EEEEeeecCCCCCCCeEeecccccEEEEEECCCCCCceEEEEEEEecCC-CCccHHHHHHHhhHHHHHHHHHH
Confidence            222 22 221  11111111   22  2233455677653   4999999999887 5565555 344555556666666


Q ss_pred             HHHH
Q 030202          165 KEAL  168 (181)
Q Consensus       165 e~~~  168 (181)
                      .+++
T Consensus       198 rk~~  201 (202)
T cd08902         198 KKAL  201 (202)
T ss_pred             HHhc
Confidence            6553

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7alpha-hydroxycholesterol. STARD4 is ubiquitously expressed, with highest levels in liver and kidney.

>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []

Probab=90.41  E-value=7  Score=30.32  Aligned_cols=145  Identities=15%  Similarity=0.159  Sum_probs=79.6

Q ss_pred             CCeeeEEEEEEeCCCHHHHHHHHhccCCcccccccceeEEEecCCCCCCceEEEEeeeecCCCCCCCCCcCccceEEEEE
Q 030202           14 PKWQGRACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKL   93 (181)
Q Consensus        14 ~~w~~~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~G~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl   93 (181)
                      +.+.-++...| +++++++...+.+-..  +|.+.+..+++++--+.. ..+..... ..|. +  ++ ......+.-|.
T Consensus        44 ~~~~~k~~~~v-~~~~~~~~~~~~~~~~--~Wd~~~~~~~~le~~~~~-~~i~~~~~-~~~~-~--~p-~~~RDfv~~~~  114 (206)
T PF01852_consen   44 PIKMFKAEGVV-PASPEQVVEDLLDDRE--QWDKMCVEAEVLEQIDED-TDIVYFVM-KSPW-P--GP-VSPRDFVFLRS  114 (206)
T ss_dssp             SCEEEEEEEEE-SSCHHHHHHHHHCGGG--HHSTTEEEEEEEEEEETT-EEEEEEEE-E-CT-T--TT-SSEEEEEEEEE
T ss_pred             cceEEEEEEEE-cCChHHHHHHHHhhHh--hcccchhhheeeeecCCC-CeEEEEEe-cccC-C--CC-CCCcEEEEEEE
Confidence            55667788888 9999988776654433  899999888776521111 33444332 1121 0  10 00011222222


Q ss_pred             EEEecC-CCeEEEEEeecc-c--------ceeeEEEEEEEEEcCCc-eEEEEEEEEeeCCCCCHHHHH-HHHHHHHHHHH
Q 030202           94 LAINAE-EMTLTYSIVDGN-V--------GFYGYVSTLTVAPKENG-CYIEWKYEVEPVKGWRLEDLD-CFISSGLQVMA  161 (181)
Q Consensus        94 ~~~D~~-~~~~~y~v~~g~-~--------p~~~~~~t~~v~p~~~g-T~v~W~~~~~p~~~~~~~~~~-~~~~~gl~~l~  161 (181)
                      ...+.. ...+..+-++.+ .        ....+.+-+.++|.+++ |+|++....+|. |..+..+. .++....-.+.
T Consensus       115 ~~~~~~~~~~i~~~Si~~~~~~~~~~~~VR~~~~~s~~~i~~~~~~~~~vt~~~~~D~~-G~iP~~~~n~~~~~~~~~~~  193 (206)
T PF01852_consen  115 WRKDEDGTYVIVSRSIDHPQYPPNSKGYVRAEILISGWVIRPLGDGRTRVTYVSQVDPK-GWIPSWLVNMVVKSQPPNFL  193 (206)
T ss_dssp             EEECTTSEEEEEEEEEEBTTSSTT-TTSEEEEEESEEEEEEEETTCEEEEEEEEEEESS-SSSHHHHHHHHHHHHHHHHH
T ss_pred             EEEeccceEEEEEeeeccccccccccCcceeeeeeEeEEEEEccCCCceEEEEEEECCC-CCChHHHHHHHHHHhHHHHH
Confidence            222222 223444333322 1        13366678889999987 999999999997 45554443 33455444444


Q ss_pred             HHHHHHH
Q 030202          162 RRMKEAL  168 (181)
Q Consensus       162 ~~le~~~  168 (181)
                      +.+.+++
T Consensus       194 ~~~~~~~  200 (206)
T PF01852_consen  194 KNLRKAL  200 (206)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            4444444

StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....

>cd08909 START_STARD13-like C-terminal lipid-binding START domain of mammalian STARD13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain

Probab=89.29  E-value=10  Score=30.53  Aligned_cols=129  Identities=9%  Similarity=0.006  Sum_probs=73.0

Q ss_pred             CCCeeeEEEEEEeCCCHHHHHHHHhccCCcccccccceeEEEec-CC-CCCCceEEEEeeeecCCCCCCCCCcCccceEE
Q 030202           13 QPKWQGRACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQ-GI-SGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTK   90 (181)
Q Consensus        13 ~~~w~~~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~-G~-~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~   90 (181)
                      ...|++  +++| +++++.|-..+.+  .-++|-..+..+..++ -+ ...++.-+.-.  +.|...  .      ..+.
T Consensus        51 lk~~r~--~~ei-~~~p~~VL~~vl~--~R~~WD~~~~~~~~ie~ld~~tdi~~y~~~~--~~P~~~--R------D~v~  115 (205)
T cd08909          51 LRLWKV--SVEV-EAPPSVVLNRVLR--ERHLWDEDFLQWKVVETLDKQTEVYQYVLNC--MAPHPS--R------DFVV  115 (205)
T ss_pred             eEEEEE--EEEe-CCCHHHHHHHHHh--hHhhHHhhcceeEEEEEeCCCcEEEEEEeec--CCCCCC--C------EEEE
Confidence            446664  7788 9999999887655  4678999888776654 22 23333222221  112211  1      1444


Q ss_pred             EEEEEEecC--CCeEEEEEeecc-cc------eeeEEEEEEEEEcCCc-eEEEEEEEEeeCCCCCHHHHHHHHHHHH
Q 030202           91 QKLLAINAE--EMTLTYSIVDGN-VG------FYGYVSTLTVAPKENG-CYIEWKYEVEPVKGWRLEDLDCFISSGL  157 (181)
Q Consensus        91 Erl~~~D~~--~~~~~y~v~~g~-~p------~~~~~~t~~v~p~~~g-T~v~W~~~~~p~~~~~~~~~~~~~~~gl  157 (181)
                      -|-...|..  ...+.+.-++.+ .|      ...+.+-+-++|.++| |+|++...++|. |..+.-+.+.|...+
T Consensus       116 ~R~w~~~~~~G~~vi~~~Sv~H~~~p~~g~VRa~~~~~gylI~P~~~g~trvt~i~~vDpk-G~~P~W~~n~~g~~~  191 (205)
T cd08909         116 LRSWRTDLPKGACSLVSVSVEHEEAPLLGGVRAVVLDSQYLIEPCGSGKSRLTHICRVDLK-GHSPEWYNKGFGHLC  191 (205)
T ss_pred             EEEEEEeCCCCcEEEEEecCCCCcCCCCCcEEEEEEcCcEEEEECCCCCEEEEEEEEecCC-CCChHHHHHhHHHHH
Confidence            454444432  222233333332 12      2234566778999875 999999999997 566655555444333

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.

>PF11687 DUF3284: Domain of unknown function (DUF3284); InterPro: IPR021701 This family of proteins with unknown function appears to be restricted to Firmicutes

Probab=89.05  E-value=7.1  Score=28.48  Aligned_cols=50  Identities=12%  Similarity=0.178  Sum_probs=39.8

Q ss_pred             eEEEEEEEEecCCCeEEEEEeecccceeeEEEEEEEEEcCCc-eEEEEEEEEeeC
Q 030202           88 WTKQKLLAINAEEMTLTYSIVDGNVGFYGYVSTLTVAPKENG-CYIEWKYEVEPV  141 (181)
Q Consensus        88 ~~~Erl~~~D~~~~~~~y~v~~g~~p~~~~~~t~~v~p~~~g-T~v~W~~~~~p~  141 (181)
                      ..+=+|+++.+ ++.|.++....   ...+..++++.|.++| |.|+++-++++.
T Consensus        53 ~~~v~It~~~~-~~~Y~~~~~s~---~~~~~i~Y~i~~~~~~~~~v~y~E~~~~~  103 (120)
T PF11687_consen   53 EAKVKITEYEP-NKRYAATFSSS---RGTFTISYEIEPLDDGSIEVTYEEEYESK  103 (120)
T ss_pred             EEEEEEEEEcC-CCEEEEEEEec---CCCEEEEEEEEECCCCcEEEEEEEEEccC
Confidence            56667999987 67888876643   2346778999999987 999999999976

>COG4891 Uncharacterized conserved protein [Function unknown]

Probab=85.45  E-value=5.9  Score=27.86  Aligned_cols=81  Identities=12%  Similarity=0.042  Sum_probs=54.0

Q ss_pred             eEEEEEEEEecCCCeEEEEEeecccceeeEEEEEEEEEcCCc-eEEEEEEEEeeCC-CCCHHHHHHHHHHHHHHHHHHHH
Q 030202           88 WTKQKLLAINAEEMTLTYSIVDGNVGFYGYVSTLTVAPKENG-CYIEWKYEVEPVK-GWRLEDLDCFISSGLQVMARRMK  165 (181)
Q Consensus        88 ~~~Erl~~~D~~~~~~~y~v~~g~~p~~~~~~t~~v~p~~~g-T~v~W~~~~~p~~-~~~~~~~~~~~~~gl~~l~~~le  165 (181)
                      .+.-+|..+.+ .+.++|.---.-..+-.-.-++++++..++ |++.-...|.++- ....+ ++.-+...+.++...+.
T Consensus        10 ~~~P~il~~~P-~reL~W~~~~~~~~l~~~~~~~~le~~~~~~t~~~q~e~F~Gvlv~fv~~-lr~~~~~~f~~~n~alr   87 (93)
T COG4891          10 KIRPVILGLEP-LRELTWLGNVRFPGLLDGERYFELEALWGGRTRFAQGESFSGVLVPFVSE-LRRGLTASFENMNPALR   87 (93)
T ss_pred             EEeeEEEeccc-chheeeecccccceEEeeEEEEEEeecCCccceeeccceecceeeccchh-hhccchhhhhhhCHHHH
Confidence            45566776766 678999754433345566778999999775 9999999998642 12222 44445666677777777


Q ss_pred             HHHhh
Q 030202          166 EALQA  170 (181)
Q Consensus       166 ~~~~~  170 (181)
                      +++++
T Consensus        88 ~raE~   92 (93)
T COG4891          88 ARAEA   92 (93)
T ss_pred             hhhhc
Confidence            76653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	181
3kl1_A	190	PYL2, putative uncharacterized protein AT2G26040;	2e-30
3rt2_A	183	Abscisic acid receptor PYL10; ABA-independent PP2C	8e-30
3qrz_A	223	Abscisic acid receptor PYL5; crystal, hormone rece	8e-28
3oqu_A	205	Abscisic acid receptor PYL9; RCAR1, hormone recept	1e-22
2le1_A	151	Uncharacterized protein; structural genomics, nort	9e-22
3k3k_A	211	Abscisic acid receptor PYR1; ABA receptor, plant h	3e-20
3p51_A	160	Uncharacterized protein; structural genomics, PSI-	8e-19
3f08_A	146	Uncharacterized protein Q6HG14; NESG Q6HG14_bachk	9e-17
3jrs_A	208	PYL1, putative uncharacterized protein AT5G46790;	6e-16
2flh_A	155	Cytokinin-specific binding protein; zeatin, pathog	1e-10
2vq5_A	201	S-norcoclaurine synthase; lyase, S- norcoclaurine	6e-09
2i9y_A	166	Major latex protein-like protein 28 or MLP-like pr	2e-08
3oji_A	189	Abscisic acid receptor PYL3; crystal, PP2C, pyraba	3e-06
1vjh_A	122	BET V I allergen family; structural genomics, cent	3e-05
1e09_A	159	PRU AV 1; allergen, major cherry allergen, pathoge	6e-04

>3kl1_A PYL2, putative uncharacterized protein AT2G26040; abscisic acid receptor, crystal, high resolution, PP2C, HORM receptor; 1.55A {Arabidopsis thaliana} PDB: 3kdi_A* 3kdh_A 3nr4_A* 3ns2_A* 3nj0_A* 3nj1_A* 3nmh_A* 3kaz_A 3kb0_A* 3kb3_A* 3ujl_A* 3nmp_A* 3nmt_A* 3nmv_A* Length = 190

 Score =  109 bits (272), Expect = 2e-30
 Identities = 29/176 (16%), Positives = 57/176 (32%), Gaps = 21/176 (11%)

Query: 5   DDHHGKQEQPKWQGRACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGC 64
             +H  +  P        +     A  +W  +  F   +++   +  C  I G  G  G 
Sbjct: 23  KTYHQFEPDPTTCTSLITQRIHAPASVVWPLIRRFDNPERYKHFVKRCRLISG-DGDVGS 81

Query: 65  VRFCAGFKTPVDNKDDDHEQSVNWTKQKLLAINAEEMTLTYSIVDGNVGFYGYVSTLTVA 124
           VR      + +           + + ++L  ++ +   L++ +V G      Y S  +V 
Sbjct: 82  VREVT-VISGLP---------ASTSTERLEFVDDDHRVLSFRVVGGEHRLKNYKSVTSVN 131

Query: 125 PKEN------GCYIEWKYEVEPVKGWRLEDLDCFISS----GLQVMARRMKEALQA 170
              N         +   Y V+  +G   ED   F+ +     LQ +      A   
Sbjct: 132 EFLNQDSGKVYTVVLESYTVDIPEGNTEEDTKMFVDTVVKLNLQKLGVAATSAPMH 187

>3rt2_A Abscisic acid receptor PYL10; ABA-independent PP2C inhibitor, PP2CS, hydrolase inhibitor; 1.50A {Arabidopsis thaliana} PDB: 3r6p_A* 3qtj_A* 3uqh_A 3rt0_C Length = 183

 Score =  107 bits (267), Expect = 8e-30
 Identities = 28/175 (16%), Positives = 58/175 (33%), Gaps = 22/175 (12%)

Query: 7   HHGKQEQPKWQGRACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVR 66
           HH  +           +        +W+ +  F    K+ P ++ C+ +QG   + G VR
Sbjct: 17  HHRHELVESQCSSTLVKHIKAPLHLVWSIVRRFDEPQKYKPFISRCV-VQGKKLEVGSVR 75

Query: 67  FCAGFKTPVDNKDDDHEQSVNWTKQKLLAINAEEMTLTYSIVDGNVGFYGYVSTLTVAPK 126
                                 + + L  ++  E  L   IV G+     Y ST+++  +
Sbjct: 76  EVDL----------KSGLPATKSTEVLEILDDNEHILGIRIVGGDHRLKNYSSTISLHSE 125

Query: 127 ----ENGCYIEWKYEVEPVKGWRLEDLDCFISS-------GLQVMARRMKEALQA 170
               + G      + V+  +G   E+   F+ +        L  +  R++     
Sbjct: 126 TIDGKTGTLAIESFVVDVPEGNTKEETCFFVEALIQCNLNSLADVTERLQAESME 180

>3oqu_A Abscisic acid receptor PYL9; RCAR1, hormone receptor; HET: A8S; 2.68A {Arabidopsis thaliana} Length = 205

 Score = 89.0 bits (220), Expect = 1e-22
 Identities = 31/168 (18%), Positives = 61/168 (36%), Gaps = 20/168 (11%)

Query: 7   HHGKQEQPKWQGRACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVR 66
           HH    +      A  +        +W+ +  F    K+ P ++ C  I     + G +R
Sbjct: 42  HHQHLCRENQCTSALVKHIKAPLHLVWSLVRRFDQPQKYKPFVSRCTVIGD--PEIGSLR 99

Query: 67  FCAGFKTPVDNKDDDHEQSVNWTKQKLLAINAEEMTLTYSIVDGNVGFYGYVSTLTVAPK 126
                   V+ K      +     ++L  ++ EE  L   I+ G+     Y S LTV P+
Sbjct: 100 -------EVNVKSGLPATTS---TERLELLDDEEHILGIKIIGGDHRLKNYSSILTVHPE 149

Query: 127 ----ENGCYIEWKYEVEPVKGWRLED----LDCFISSGLQVMARRMKE 166
                 G  +   + V+  +G   ++    ++  I   L+ +A   + 
Sbjct: 150 IIEGRAGTMVIESFVVDVPQGNTKDETCYFVEALIRCNLKSLADVSER 197

>2le1_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, unknown function; NMR {Thermobifida fusca} Length = 151

 Score = 85.2 bits (210), Expect = 9e-22
 Identities = 24/149 (16%), Positives = 46/149 (30%), Gaps = 18/149 (12%)

Query: 29  AEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNW 88
           A  +W  + DF  + +W P ++           PG  R                  +   
Sbjct: 14  AADVWTLVGDFSAIHRWHPQVSAPTLRGASPHTPGAERVF-------------GAGTEEE 60

Query: 89  TKQKLLAINAEEMTLTYSIVDGNVGFYGYVSTLTVAPK-ENGCYIEWKYEVEPVKGWRLE 147
             ++L+  +     L Y++ D       + + L V P+ +  C + W    +       E
Sbjct: 61  LVERLVERDESARRLVYTMPDPPFPITNHRAVLEVVPRDDRHCTVVWTAMFDCSPETARE 120

Query: 148 D----LDCFISSGLQVMARRMKEALQAYE 172
                 D   + GL  +A R       + 
Sbjct: 121 LESVIGDGVFAVGLNALAERYGRLEHHHH 149

>3k3k_A Abscisic acid receptor PYR1; ABA receptor, plant hormone receptor, A sensor, drought tolerance, plant development; HET: A8S; 1.70A {Arabidopsis thaliana} PDB: 3njo_A* 3qn1_A* 3k90_A* 3jrq_B* 3kdj_A* 3nef_A* 3neg_A* 3nmn_A* 3kay_A* Length = 211

 Score = 82.9 bits (204), Expect = 3e-20
 Identities = 32/172 (18%), Positives = 55/172 (31%), Gaps = 19/172 (11%)

Query: 7   HHGKQEQPKWQGRACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVR 66
            H  Q  P        +      E +W+ +  F     +   + +C   Q    + GC R
Sbjct: 40  FHTYQLDPGSCSSLHAQRIHAPPELVWSIVRRFDKPQTYKHFIKSCSVEQNFEMRVGCTR 99

Query: 67  FCAGFKTPVDNKDDDHEQSVNWTKQKLLAINAEEMTLTYSIVDGNVGFYGYVSTLTVAPK 126
                               N + ++L  ++ E     +SI+ G      Y S  TV   
Sbjct: 100 DV----------IVISGLPANTSTERLDILDDERRVTGFSIIGGEHRLTNYKSVTTVHRF 149

Query: 127 EN----GCYIEWKYEVEPVKGWRLED----LDCFISSGLQVMARRMKEALQA 170
           E        +   Y V+  +G   +D     D  +   LQ +A  + EA+  
Sbjct: 150 EKENRIWTVVLESYVVDMPEGNSEDDTRMFADTVVKLNLQKLA-TVAEAMAR 200

>3p51_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 2.06A {Nitrosospira multiformis} Length = 160

 Score = 77.8 bits (191), Expect = 8e-19
 Identities = 27/144 (18%), Positives = 48/144 (33%), Gaps = 25/144 (17%)

Query: 29  AEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQP-GCVRFCAGFKTPVDNKDDDHEQSVN 87
            E++W+ + +F         + +C  + G  G   G  R   G                 
Sbjct: 14  VERVWSRIRNFHDFSWAPSLIKSCKKVGGGGGYSVGARRLLNG----------------- 56

Query: 88  WTKQKLLAINAEEMTLTYSIVDGNV-----GFYGYVSTLTVAPKE--NGCYIEWKYEVEP 140
                L+A +  E  + YS+ +G         Y YV  L + P    +  ++EW    E 
Sbjct: 57  EFLDTLIAYSEIERRIMYSMDEGPSPVSSGEIYNYVGNLHLLPVTIDDTTFVEWSGSWES 116

Query: 141 VKGWRLEDLDCFISSGLQVMARRM 164
                +E ++    S L  +A   
Sbjct: 117 ASTEAVEYMNTVYRSLLADLAAEF 140

>3f08_A Uncharacterized protein Q6HG14; NESG Q6HG14_bachk Q6HG14 BUR153, structural genomics, PSI-2; 2.20A {Bacillus thuringiensis serovar konkukiorganism_taxid} PDB: 3cnw_A Length = 146

 Score = 72.1 bits (176), Expect = 9e-17
 Identities = 29/153 (18%), Positives = 50/153 (32%), Gaps = 21/153 (13%)

Query: 27  VKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSV 86
              EQ+W  +  F  L  W P + +    +G  G+   +    G                
Sbjct: 12  GSTEQVWQLIGGFNSLPDWLPYIPSSKLTEG--GRVRHLANPDG---------------- 53

Query: 87  NWTKQKLLAINAEEMTLTYSIVDGNVGFYGYVSTLTVAPKENG--CYIEWKYEVEPVKGW 144
               ++L   N +E   TYSI++       Y+ST+ V          +EW     PV   
Sbjct: 54  ETIIERLEVFNDKERYYTYSIMNAPFPVTNYLSTIQVKEGTESNTSLVEWSGTFTPVAV- 112

Query: 145 RLEDLDCFISSGLQVMARRMKEALQAYEVIMHY 177
             E+    +        + ++ A    E   H+
Sbjct: 113 SDEEAINLVHGIYSDGLKALQHAFLDLEHHHHH 145

>3jrs_A PYL1, putative uncharacterized protein AT5G46790; plant hormone receptor, abscisic acid, hormone recepto; HET: A8S; 2.05A {Arabidopsis thaliana} Length = 208

 Score = 71.3 bits (174), Expect = 6e-16
 Identities = 31/173 (17%), Positives = 54/173 (31%), Gaps = 22/173 (12%)

Query: 7   HHGKQEQPKWQGRACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVR 66
            H  Q           +      E +W+ +  F     +   + +C   +    + GC R
Sbjct: 44  FHTYQLGNGRCSSLLAQRIHAPPETVWSVVRRFDRPQIYKHFIKSCNVSEDFEMRVGCTR 103

Query: 67  FCAGFKTPVDNKDDDHEQSVNWTKQKLLAINAEEMTLTYSIVDGNVGFYGYVSTLTVAPK 126
                               N ++++L  ++ +     +SI  G      Y S  TV   
Sbjct: 104 DVNVISG----------LPANTSRERLDLLDDDRRVTGFSITGGEHRLRNYKSVTTVHRF 153

Query: 127 EN-------GCYIEWKYEVEPVKGWRLED----LDCFISSGLQVMARRMKEAL 168
           E           +   Y V+  +G   ED     D  I   LQ +A  + EA+
Sbjct: 154 EKEEEEERIWTVVLESYVVDVPEGNSEEDTRLFADTVIRLNLQKLA-SITEAM 205

>2flh_A Cytokinin-specific binding protein; zeatin, pathogenesis-related proteins, multiple- ligand binding, plant protein; HET: ZEA; 1.20A {Vigna radiata} PDB: 3c0v_A* Length = 155

 Score = 56.1 bits (135), Expect = 1e-10
 Identities = 21/155 (13%), Positives = 52/155 (33%), Gaps = 16/155 (10%)

Query: 22  EELTGVKAEQIW-AFLEDFFGL-DKWFPTLTTCIPIQGISGQPGCVRFCAGFKTPVDNKD 79
           +    V+ E +W    +DF  +  K  P +   + +    G  G +             +
Sbjct: 8   QTELSVRLEALWAVLSKDFITVVPKVLPHIVKDVQLIEGDGGVGTILIF----------N 57

Query: 80  DDHEQSVNWTKQKLLAINAEEMTLTYSIVDGNV---GFYGYVSTLTVAPK-ENGCYIEWK 135
              E S ++ ++++   +     +   +++G     G   Y +T  ++   E+   +  K
Sbjct: 58  FLPEVSPSYQREEITEFDESSHEIGLQVIEGGYLSQGLSYYKTTFKLSEIEEDKTLVNVK 117

Query: 136 YEVEPVKGWRLEDLDCFISSGLQVMARRMKEALQA 170
              +       +      S    +  RR++  L  
Sbjct: 118 ISYDHDSDIEEKVTPTKTSQSTLMYLRRLERYLSN 152

>2vq5_A S-norcoclaurine synthase; lyase, S- norcoclaurine biosynthesis, dopamine, hydroxybenzaldehyde; HET: MSE LDP HBA; 2.09A {Thalictrum flavum} PDB: 2vne_A* Length = 201

 Score = 52.3 bits (125), Expect = 6e-09
 Identities = 29/157 (18%), Positives = 55/157 (35%), Gaps = 20/157 (12%)

Query: 22  EELTGVKAEQIWAFLEDFFG---LDKWFPTLTTCIPIQGISGQPGCVRFCAGFKTPVDNK 78
           E      A+ IW           L    P     + I G  G  G +     F       
Sbjct: 34  ELEVAASADDIWTVYSWPGLAKHLPDLLPGAFEKLEIIG-DGGVGTILDMT-FV------ 85

Query: 79  DDDHEQSVNWTKQKLLAINAEEMTLTYSIVDGNV---GFYGYVSTLTVAPK-ENGCYIEW 134
                +  +  K+K + ++ E       +++G     G   Y+ T+ V P  ++ C I+ 
Sbjct: 86  ---PGEFPHEYKEKFILVDNEHRLKKVQMIEGGYLDLGVTYYMDTIHVVPTGKDSCVIKS 142

Query: 135 KYEVEPVKGWRLEDLDCFISSG-LQVMARRMKEALQA 170
             E    K   ++ ++  I++G L  MA  + + +  
Sbjct: 143 STEYHV-KPEFVKIVEPLITTGPLAAMADAISKLVLE 178

>2i9y_A Major latex protein-like protein 28 or MLP-like protein 28; AT1G70830, BET V1-like, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} Length = 166

 Score = 50.3 bits (120), Expect = 2e-08
 Identities = 26/143 (18%), Positives = 56/143 (39%), Gaps = 17/143 (11%)

Query: 7   HHGKQEQPKWQGRACEELT-GVKAEQIW-AFLEDFFGLDKWFP-TLTTCIPIQGISGQPG 63
           HH + E     G+   ++     A++    F      + K  P  +  C   +G  G  G
Sbjct: 6   HHLETEASSLVGKLETDVEIKASADKFHHMFAGKPHHVSKASPGNIQGCDLHEGDWGTVG 65

Query: 64  CVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLAINAEEMTLTYSIVDGNV--GFYGYVSTL 121
            + F              H+      K+++ A+  ++  +T+ +++G++   +  ++ T+
Sbjct: 66  SIVFWNYV----------HDGEAKVAKERIEAVEPDKNLITFRVIEGDLMKEYKSFLLTI 115

Query: 122 TVAPKEN--GCYIEWKYEVEPVK 142
            V PK    G  + W  E E + 
Sbjct: 116 QVTPKPGGPGSIVHWHLEYEKIS 138

>3oji_A Abscisic acid receptor PYL3; crystal, PP2C, pyrabactin, HOR receptor; HET: PYV; 1.84A {Arabidopsis thaliana} PDB: 3klx_A Length = 189

 Score = 44.4 bits (104), Expect = 3e-06
 Identities = 32/178 (17%), Positives = 56/178 (31%), Gaps = 27/178 (15%)

Query: 7   HHGKQEQPKWQGRACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISG----QP 62
           HH     P              A  IW F+ DF   +K+   + +C      +G    + 
Sbjct: 20  HHTFPRSPNTCTSLIAHRVDAPAHAIWRFVRDFANPNKYKHFIKSCTIRVNGNGIKEIKV 79

Query: 63  GCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLAINAEEMTLTYSIVDGNVGFYGYVSTLT 122
           G +R        V         +     + L  ++ E+  L++ ++ G      Y S  +
Sbjct: 80  GTIR-------EVSVVSGLPASTS---VEILEVLDEEKRILSFRVLGGEHRLNNYRSVTS 129

Query: 123 VAPKEN---------GCYIEWKYEVEPVKGWRLEDLDCF----ISSGLQVMARRMKEA 167
           V                 +   Y V+  +G   ED   F    + S LQ +A     +
Sbjct: 130 VNEFVVLEKDKKKRVYSVVLESYIVDIPQGNTEEDTRMFVDTVVKSNLQNLAVISTAS 187

>1vjh_A BET V I allergen family; structural genomics, center for eukaryotic structural genomics, protein structure initiative, CESG, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.129.3.1 PDB: 2q3q_A Length = 122

 Score = 40.7 bits (95), Expect = 3e-05
 Identities = 14/76 (18%), Positives = 32/76 (42%), Gaps = 7/76 (9%)

Query: 71  FKTPVDNKDDDHEQSVNWTKQKLLAINAEEMTLTYSIVDGNV--GFYGYVSTLTVAPKEN 128
           F   V++ +   E++    K ++ A++  + T+T  +    +   F     ++ V P   
Sbjct: 21  FSAFVEDTNRPFEKN---GKTEIEAVDLVKKTMTIQMSGSEIQKYFKTLKGSIAVTPIGV 77

Query: 129 --GCYIEWKYEVEPVK 142
             G ++ W +  E V 
Sbjct: 78  GDGSHVVWTFHFEKVH 93

>1e09_A PRU AV 1; allergen, major cherry allergen, pathogenesis-related protein, heteronuclear structure; NMR {Prunus avium} SCOP: d.129.3.1 PDB: 1h2o_A 2lpx_A Length = 159

 Score = 37.7 bits (87), Expect = 6e-04
 Identities = 19/137 (13%), Positives = 47/137 (34%), Gaps = 24/137 (17%)

Query: 22  EELTGVKAEQIW-AFLEDFFGL--DKWFPTLTTCIPIQGISGQPGCVR---FCAGFKTPV 75
           E  + +   +++ AF+ D   L        +     ++G  G PG ++   F  G +   
Sbjct: 8   EFTSEIPPPRLFKAFVLDADNLVPKIAPQAIKHSEILEG-DGGPGTIKKITFGEGSQYGY 66

Query: 76  DNKDDDHEQSVNWTKQKLLAINAEEMTLTYSIVDGNV---GFYGYVSTLTVAPKENG-CY 131
                         K K+ +I+ E  + +Y++++G+              +    +G   
Sbjct: 67  -------------VKHKIDSIDKENYSYSYTLIEGDALGDTLEKISYETKLVASPSGGSI 113

Query: 132 IEWKYEVEPVKGWRLED 148
           I+            +++
Sbjct: 114 IKSTSHYHTKGNVEIKE 130

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	181
3rt2_A	183	Abscisic acid receptor PYL10; ABA-independent PP2C	99.97
3jrs_A	208	PYL1, putative uncharacterized protein AT5G46790;	99.97
3k3k_A	211	Abscisic acid receptor PYR1; ABA receptor, plant h	99.96
2i9y_A	166	Major latex protein-like protein 28 or MLP-like pr	99.96
3f08_A	146	Uncharacterized protein Q6HG14; NESG Q6HG14_bachk	99.96
3kl1_A	190	PYL2, putative uncharacterized protein AT2G26040;	99.96
3oqu_A	205	Abscisic acid receptor PYL9; RCAR1, hormone recept	99.96
3oji_A	189	Abscisic acid receptor PYL3; crystal, PP2C, pyraba	99.96
3p51_A	160	Uncharacterized protein; structural genomics, PSI-	99.96
2flh_A	155	Cytokinin-specific binding protein; zeatin, pathog	99.95
2vjg_A	154	Major allergen DAU C 1; major carrot allergen, pat	99.95
3rws_A	168	MTN13 protein; zeatin, cytokinin, hormone, lucerne	99.95
4a8u_A	159	Major pollen allergen BET V 1-J; PR-10 protein; 1.	99.94
1e09_A	159	PRU AV 1; allergen, major cherry allergen, pathoge	99.94
1tw0_A	157	Pathogenesis-related class 10 protein SPE-16; seve	99.94
3ie5_A	165	Phenolic oxidative coupling protein HYP-1; hyperic	99.94
3qrz_A	223	Abscisic acid receptor PYL5; crystal, hormone rece	99.94
1icx_A	155	Protein LLR18A, LLPR10.1A; 7-stranded beta sheet,	99.94
2qim_A	158	PR10.2B; trans-zeatin, cytokinin, plant hormones,	99.94
2vq5_A	201	S-norcoclaurine synthase; lyase, S- norcoclaurine	99.93
2le1_A	151	Uncharacterized protein; structural genomics, nort	99.93
2wql_A	154	Major allergen DAU C 1; pathogenesis-related prote	99.92
3tvq_A	169	Multifunctional cyclase-dehydratase-3-O-methyl TR	99.77
3tl1_A	159	WHIE ORF VI, polyketide cyclase; helix-GRIP fold,	99.75
2d4r_A	147	Hypothetical protein TTHA0849; start domain, struc	99.72
3tfz_A	172	Cyclase; helix-GRIP, BET V1-like superfamily, bios	99.71
3ijt_A	155	SMU.440, putative uncharacterized protein; hypothe	99.69
1vjh_A	122	BET V I allergen family; structural genomics, cent	99.67
1t17_A	148	Conserved hypothetical protein; beta-alpha-beta-BE	99.61
2pcs_A	162	Conserved protein; structural genomics, unknown fu	99.51
3ggn_A	155	Uncharacterized protein DR_A0006; structural genom	99.46
2ns9_A	157	Hypothetical protein APE2225; uncharacterized cons	99.45
3p9v_A	161	Uncharacterized protein; structural genomics, PSI-	99.3
2leq_A	146	Uncharacterized protein; start domains, structural	99.21
1z94_A	147	Conserved hypothetical protein; NESG, CV1439, stru	99.2
2qpv_A	156	Uncharacterized protein ATU1531; structural genomi	99.13
3q64_A	162	MLL3774 protein; structural genomics, PSI-biology,	99.12
2lcg_A	142	Uncharacterized protein; start domain, structural	99.12
1xuv_A	178	Hypothetical protein MM0500; alpha-beta protein, n	99.12
2lak_A	160	AHSA1-like protein RHE_CH02687; NESG, structural g	99.1
1xn6_A	143	Hypothetical protein BC4709; structural genomics,	99.07
3rd6_A	161	MLL3558 protein; structural genomics, PSI-biology,	99.06
2il5_A	171	Hypothetical protein; structural genomics, APC2365	99.05
3q6a_A	135	Uncharacterized protein; structural genomics, PSI-	99.04
3q63_A	151	MLL2253 protein; structural genomics, PSI-biology,	99.03
2lgh_A	144	Uncharacterized protein; AHSA1, start domain, COG3	99.02
1xn5_A	146	BH1534 unknown conserved protein; structural genom	99.02
2l8o_A	144	Uncharacterized protein; mixed alpha-beta protein,	99.01
3put_A	166	Hypothetical conserved protein; structural genomic	99.0
2ldk_A	172	Uncharacterized protein; structural genomics, nort	98.98
1xfs_A	178	NC_840354, conserved hypothetical protein; structu	98.98
2nn5_A	184	Hypothetical protein EF_2215; structural genomics,	98.97
2lf2_A	175	Uncharacterized protein; NESG, structural genomics	98.93
3eli_A	152	AHSA1, AHA1 domain protein; alpha-beta protein, st	98.92
2kew_A	152	Uncharacterized protein YNDB; start domain, resona	98.91
3pu2_A	164	Uncharacterized protein; SRPBCC superfamily, PSI-b	98.91
2l9p_A	164	Uncharacterized protein; structural genomics, nort	98.86
3uid_A	168	Putative uncharacterized protein; SRPBCC superfami	98.83
2k5g_A	191	Uncharacterized protein; structural genomiccs, pro	98.67
1x53_A	145	Activator of 90 kDa heat shock protein ATPase homo	98.67
3qsz_A	189	STAR-related lipid transfer protein; structural ge	98.6
3ni8_A	158	PFC0360W protein; heat shock, malaria, ATPase, str	98.58
4fpw_A	181	CALU16; structural genomics, PSI-biology, northeas	98.57
2luz_A	192	CALU16; structural genomics, northeast structural	98.45
1zxf_A	155	CALC; SELF-sacrificing resistance protein, structu	98.42
3oh8_A	516	Nucleoside-diphosphate sugar epimerase (SULA FAMI;	98.4
1ln1_A	214	PC-TP, phosphatidylcholine transfer protein; start	98.03
1jss_A	224	Stard4, cholesterol-regulated start protein 4; sta	97.47
3p0l_A	221	Steroidogenic acute regulatory protein, mitochond;	97.33
2r55_A	231	STAR-related lipid transfer protein 5; alpha and b	97.25
1em2_A	229	MLN64 protein; beta barrel, lipid binding protein;	97.17
2lio_A	136	Uncharacterized protein; structural genomics, nort	97.11
2e3n_A	255	Lipid-transfer protein CERT; ceramide transfer, li	96.86
2pso_A	237	STAR-related lipid transfer protein 13; alpha and	96.46
3fo5_A	258	Thioesterase, adipose associated, isoform BFIT2; o	96.21
2ffs_A	157	Hypothetical protein PA1206; 7-stranded beta sheet	94.84

>3rt2_A Abscisic acid receptor PYL10; ABA-independent PP2C inhibitor, PP2CS, hydrolase inhibitor; 1.50A {Arabidopsis thaliana} PDB: 3r6p_A* 3qtj_A* 3uqh_A 3rt0_C

Probab=99.97  E-value=4.8e-30  Score=201.29  Aligned_cols=154  Identities=18%  Similarity=0.263  Sum_probs=129.5

Q ss_pred             CCCCCCCCCCeeeE-EEEEEeCCCHHHHHHHHhccCCcccccccceeEEEecCCCCCCceEEEEeeeecCCCCCCCCCcC
Q 030202            6 DHHGKQEQPKWQGR-ACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQ   84 (181)
Q Consensus         6 ~~~~~~~~~~w~~~-v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~G~~~~vGsvR~~~~~~~~~~g~~G~~~~   84 (181)
                      .||+..-.|.=+.+ +..+| +||+++||++++||+++++|+|.|.+| .++|+++++|++|.+++.    +   |  .+
T Consensus        16 ~~~~~~~~~~~~~~~v~~~I-~Apa~~VW~~v~df~~l~~w~P~V~s~-~~eG~~ggvGsvR~lt~~----~---G--~p   84 (183)
T 3rt2_A           16 KHHRHELVESQCSSTLVKHI-KAPLHLVWSIVRRFDEPQKYKPFISRC-VVQGKKLEVGSVREVDLK----S---G--LP   84 (183)
T ss_dssp             HHSCCCCSTTEEEEEEEEEE-SSCHHHHHHHHTCTTCGGGTCTTEEEE-EESSSCCCTTCEEEEEEC----C---S--ST
T ss_pred             HhhccCCCCCceEEEEEEEE-eCCHHHHHHHHhCcCchhhcCccceEE-EeeCCCCCCCcEEEEEeC----C---C--Cc
Confidence            36766665554544 46777 999999999999999999999999999 567877899999999972    2   3  22


Q ss_pred             ccceEEEEEEEEecCCCeEEEEEeecccceeeEEEEEEEEEcC-C---ceEEEEEEEEeeCCCCCHHHH----HHHHHHH
Q 030202           85 SVNWTKQKLLAINAEEMTLTYSIVDGNVGFYGYVSTLTVAPKE-N---GCYIEWKYEVEPVKGWRLEDL----DCFISSG  156 (181)
Q Consensus        85 ~~~~~~Erl~~~D~~~~~~~y~v~~g~~p~~~~~~t~~v~p~~-~---gT~v~W~~~~~p~~~~~~~~~----~~~~~~g  156 (181)
                       ...++|||+++|+++|+|+|+|++|++|+++|.++++|.|.+ +   ||+|+|+++|+|.++...+.+    ..+|+.+
T Consensus        85 -~~~vkErL~~~D~~~~~~sY~Iieg~lp~~~y~ati~v~p~~~dG~~gt~V~Ws~~fd~~~g~~~e~~~~~~~~i~~~~  163 (183)
T 3rt2_A           85 -ATKSTEVLEILDDNEHILGIRIVGGDHRLKNYSSTISLHSETIDGKTGTLAIESFVVDVPEGNTKEETCFFVEALIQCN  163 (183)
T ss_dssp             -TCEEEEEEEEEETTTTEEEEEEEEESCSCTTCEEEEEEEEEEETTEEEEEEEEEEEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred             -cceEEEEEEEEECCCCEEEEEEecCCcceeEEEEEEEEEEecCCCCCCEEEEEEEEEEcCCCCCHHHHHHHHHHHHHHH
Confidence             358999999999999999999999999999999999999975 4   599999999998777766554    5789999


Q ss_pred             HHHHHHHHHHHHhhh
Q 030202          157 LQVMARRMKEALQAY  171 (181)
Q Consensus       157 l~~l~~~le~~~~~~  171 (181)
                      |++|++.+|+.+.++
T Consensus       164 L~~L~~~~e~~~~~~  178 (183)
T 3rt2_A          164 LNSLADVTERLQAES  178 (183)
T ss_dssp             HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhhhc
Confidence            999999999977543

>3jrs_A PYL1, putative uncharacterized protein AT5G46790; plant hormone receptor, abscisic acid, hormone recepto; HET: A8S; 2.05A {Arabidopsis thaliana}

Probab=99.97  E-value=6.9e-29  Score=197.96  Aligned_cols=151  Identities=19%  Similarity=0.228  Sum_probs=121.6

Q ss_pred             CCCCCCCCC-eeeEEEEEEeCCCHHHHHHHHhccCCcccccccceeEEEecCCCCCCceEEEEeeeecCCCCCCCCCcCc
Q 030202            7 HHGKQEQPK-WQGRACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQS   85 (181)
Q Consensus         7 ~~~~~~~~~-w~~~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~G~~~~vGsvR~~~~~~~~~~g~~G~~~~~   85 (181)
                      ||+..-.|. =...+..+| +||+++||++++||+++++|.|.|.+|++.+|+++++|++|.+++.    +|     .+ 
T Consensus        44 ~~~h~~~~~~c~~~v~~~I-~ApadkVW~lv~Df~~l~~w~p~V~s~e~~eGd~g~vGsVR~lt~~----~G-----~p-  112 (208)
T 3jrs_A           44 FHTYQLGNGRCSSLLAQRI-HAPPETVWSVVRRFDRPQIYKHFIKSCNVSEDFEMRVGCTRDVNVI----SG-----LP-  112 (208)
T ss_dssp             HSCCCCCTTEEEEEEEEEE-SSCHHHHHHHHTCTTCGGGTCTTEEEEECCTTCCCSTTCEEEEEEC----TT-----SS-
T ss_pred             HhccCCCCCeEeEEEEEEE-eCCHHHHHHHHhCcCChhHccccceEEEEecCCCCCCCeEEEEEec----CC-----Cc-
Confidence            555544444 444556778 9999999999999999999999999999888877899999999972    22     12 


Q ss_pred             cceEEEEEEEEecCCCeEEEEEeecccceeeEEEEEEEEEcC--CceEEEEEEEEe-----eCCCCCHHHH----HHHHH
Q 030202           86 VNWTKQKLLAINAEEMTLTYSIVDGNVGFYGYVSTLTVAPKE--NGCYIEWKYEVE-----PVKGWRLEDL----DCFIS  154 (181)
Q Consensus        86 ~~~~~Erl~~~D~~~~~~~y~v~~g~~p~~~~~~t~~v~p~~--~gT~v~W~~~~~-----p~~~~~~~~~----~~~~~  154 (181)
                      ...++|||+++|+++++|+|+|++|++|+++|.++++|.|.+  ++|+|+|+.+|+     |..+...+.+    ..+|+
T Consensus       113 ~~~vkErL~~lDde~~~~sYsIieG~lpv~~Y~sti~V~p~~~g~~t~V~Wt~~fes~~~D~p~g~~~e~a~~~~~~vy~  192 (208)
T 3jrs_A          113 ANTSRERLDLLDDDRRVTGFSITGGEHRLRNYKSVTTVHRFEKEEEEERIWTVVLESYVVDVPEGNSEEDTRLFADTVIR  192 (208)
T ss_dssp             CCEEEEEEEEEETTTTEEEEEEEESSSSCTTCEEEEEEEEEEC-----CEEEEEEEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             cceEEEEEEEEeccCCEEEEEEeeCCcceeeEEEEEEEEEccCCCccEEEEEEEEEEccCCCCCCCCHHHHHHHHHHHHH
Confidence            348999999999999999999999999999999999999963  479999999997     3445555444    35899


Q ss_pred             HHHHHHHHHHHHHH
Q 030202          155 SGLQVMARRMKEAL  168 (181)
Q Consensus       155 ~gl~~l~~~le~~~  168 (181)
                      .||++|++.+|+.+
T Consensus       193 ~gL~~L~~~~e~~~  206 (208)
T 3jrs_A          193 LNLQKLASITEAMN  206 (208)
T ss_dssp             HHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhhc
Confidence            99999999999853

>3k3k_A Abscisic acid receptor PYR1; ABA receptor, plant hormone receptor, A sensor, drought tolerance, plant development; HET: A8S; 1.70A {Arabidopsis thaliana} PDB: 3njo_A* 3qn1_A* 3k90_A* 3zvu_A* 3jrq_B* 3kdj_A* 3nef_A* 3neg_A* 3nmn_A* 3kay_A*

Probab=99.96  E-value=1.9e-28  Score=195.77  Aligned_cols=153  Identities=19%  Similarity=0.230  Sum_probs=124.6

Q ss_pred             CCCCCCCCCeee-EEEEEEeCCCHHHHHHHHhccCCcccccccceeEEEecCCCCCCceEEEEeeeecCCCCCCCCCcCc
Q 030202            7 HHGKQEQPKWQG-RACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQS   85 (181)
Q Consensus         7 ~~~~~~~~~w~~-~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~G~~~~vGsvR~~~~~~~~~~g~~G~~~~~   85 (181)
                      ||+..-.|.=+. .+..+| +||+++||++++||++++.|.|.|.+|++.+|+++++|++|.+++.    +   |  .+ 
T Consensus        40 ~~~h~~~~~~c~~~v~~~I-~ApadkVW~lv~dF~~l~~w~p~V~s~e~~eGd~g~vGsVR~lt~~----~---G--~p-  108 (211)
T 3k3k_A           40 FHTYQLDPGSCSSLHAQRI-HAPPELVWSIVRRFDKPQTYKHFIKSCSVEQNFEMRVGCTRDVIVI----S---G--LP-  108 (211)
T ss_dssp             HSCCCCCTTEEEEEEEEEE-SSCHHHHHHHHTCTTCGGGTCSSEEEEECCTTCCCCTTCEEEEEES----S---S--SS-
T ss_pred             HhccCCCCCeEeEEEEEEE-cCCHHHHHHHHhCcCChhHcCccceEEEEecCCCCCCCcEEEEEec----C---C--Cc-
Confidence            555544444444 446777 9999999999999999999999999999888877799999999972    2   3  22 


Q ss_pred             cceEEEEEEEEecCCCeEEEEEeecccceeeEEEEEEEEEcCCceEEEEEEEEee-----CCCC----CHHHHHHHHHHH
Q 030202           86 VNWTKQKLLAINAEEMTLTYSIVDGNVGFYGYVSTLTVAPKENGCYIEWKYEVEP-----VKGW----RLEDLDCFISSG  156 (181)
Q Consensus        86 ~~~~~Erl~~~D~~~~~~~y~v~~g~~p~~~~~~t~~v~p~~~gT~v~W~~~~~p-----~~~~----~~~~~~~~~~~g  156 (181)
                      ...++|||+++|+++++|+|+|++|++|+++|.++++|.|.++|+ |+|+.+|+.     ..+.    ....+..+|+.+
T Consensus       109 ~~~vkErL~~lDd~~~~~sYsIieg~lpv~~Y~sti~V~p~~~gg-V~Wt~~fes~~~D~P~g~~~e~a~~~v~~iy~~g  187 (211)
T 3k3k_A          109 ANTSTERLDILDDERRVTGFSIIGGEHRLTNYKSVTTVHRFEKEN-RIWTVVLESYVVDMPEGNSEDDTRMFADTVVKLN  187 (211)
T ss_dssp             CEEEEEEEEEEETTTTEEEEEEEEETTGGGTCEEEEEEEEEEETT-EEEEEEEEEEEEECCSSSSSSCCHHHHHHHHHHH
T ss_pred             cceEEEEEEEEeccCCEEEEEEeecCcceeEEEEEEEEEECCCCC-EEEEEEEEEecCCCCCCCCHHHHHHHHHHHHHHH
Confidence            358999999999999999999999999999999999999998766 999999972     2232    223335689999


Q ss_pred             HHHHHHHHHHHHhhh
Q 030202          157 LQVMARRMKEALQAY  171 (181)
Q Consensus       157 l~~l~~~le~~~~~~  171 (181)
                      |++|++.+|+.+..+
T Consensus       188 L~~L~~~~e~~~~~~  202 (211)
T 3k3k_A          188 LQKLATVAEAMARNS  202 (211)
T ss_dssp             HHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHhhhhc
Confidence            999999999975443

>2i9y_A Major latex protein-like protein 28 or MLP-like protein 28; AT1G70830, BET V1-like, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}

Probab=99.96  E-value=1.4e-28  Score=190.20  Aligned_cols=155  Identities=18%  Similarity=0.336  Sum_probs=124.6

Q ss_pred             CCCCCCCCCCCCeeeEE--EEEEeCCCHHHHHHHH-hccCCcccccc-cceeEEEecCCCCCCceEEEEeeeecCCCCCC
Q 030202            4 NDDHHGKQEQPKWQGRA--CEELTGVKAEQIWAFL-EDFFGLDKWFP-TLTTCIPIQGISGQPGCVRFCAGFKTPVDNKD   79 (181)
Q Consensus         4 ~~~~~~~~~~~~w~~~v--~~~I~~Ap~e~VW~~l-~Df~~~~~w~P-~v~~~~~~~G~~~~vGsvR~~~~~~~~~~g~~   79 (181)
                      ...||-.++..+|.+++  +++| +|||++||+++ .||..+|+|+| .|.+|++++|+++++|++|.+++.    .|  
T Consensus         3 ~~~~~~~~~~~~~~~k~~~ev~i-~apa~kvw~~~~~d~~~lpk~~P~~i~s~~~~eGd~gg~Gsir~~~~~----~g--   75 (166)
T 2i9y_A            3 HHHHHLETEASSLVGKLETDVEI-KASADKFHHMFAGKPHHVSKASPGNIQGCDLHEGDWGTVGSIVFWNYV----HD--   75 (166)
T ss_dssp             -------CCCSSSEEEEEEEEEE-SSCHHHHHGGGSSCSSCCCCSCSSCCSSCCCCSCCSCSTTCCCEEEEE----ET--
T ss_pred             cccccccccccCCccEEEEEEEe-cCCHHHHHHHHhcccccccccccccceEEEEEcCCCCCCCeEEEEEEe----cC--
Confidence            35677888899999996  6677 99999999995 59999999999 889999888876889999999983    22  


Q ss_pred             CCCcCccceEEEEEEEEecCCCeEEEEEeeccc--ceeeEEEEEEEEEc--CCceEEEEEEEEeeCCCCCHHHHHHHHHH
Q 030202           80 DDHEQSVNWTKQKLLAINAEEMTLTYSIVDGNV--GFYGYVSTLTVAPK--ENGCYIEWKYEVEPVKGWRLEDLDCFISS  155 (181)
Q Consensus        80 G~~~~~~~~~~Erl~~~D~~~~~~~y~v~~g~~--p~~~~~~t~~v~p~--~~gT~v~W~~~~~p~~~~~~~~~~~~~~~  155 (181)
                      |    ....++|||+.+|+++++++|++++|++  +++.|.++++|.|.  ++||+|+|+++|++..+..++. .. +..
T Consensus        76 g----~~~~~kErl~~iD~~~~~~~y~iieGd~~~~~~~~~~ti~v~p~~~g~gs~v~wt~~ye~~~~~~~~p-~~-~~~  149 (166)
T 2i9y_A           76 G----EAKVAKERIEAVEPDKNLITFRVIEGDLMKEYKSFLLTIQVTPKPGGPGSIVHWHLEYEKISEEVAHP-ET-LLQ  149 (166)
T ss_dssp             T----EEEEEEEEEEEEETTTTEEEEEECCTTGGGTEEEEEEEEEEEEEEETTEEEEEEEEEEEESSTTTCCT-HH-HHH
T ss_pred             C----CceEEEEEEEEEeccCcEEEEEEEeCCCCCCeeEEEEEEEEEECCCCCCcEEEEEEEEEECCCCCCCH-HH-HHH
Confidence            3    1348999999999999999999999986  58999999999998  4589999999999875433322 12 446


Q ss_pred             HHHHHHHHHHHHHhhh
Q 030202          156 GLQVMARRMKEALQAY  171 (181)
Q Consensus       156 gl~~l~~~le~~~~~~  171 (181)
                      .+..|.+.|+++++++
T Consensus       150 ~~~~~~k~ie~~l~~~  165 (166)
T 2i9y_A          150 FCVEVSKEIDEHLLAE  165 (166)
T ss_dssp             HHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHhhC
Confidence            7889999999999875

>3f08_A Uncharacterized protein Q6HG14; NESG Q6HG14_bachk Q6HG14 BUR153, structural genomics, PSI-2; 2.20A {Bacillus thuringiensis serovar konkukiorganism_taxid} SCOP: d.129.3.8 PDB: 3cnw_A

Probab=99.96  E-value=5.1e-28  Score=183.08  Aligned_cols=130  Identities=28%  Similarity=0.471  Sum_probs=110.9

Q ss_pred             eEEEEEEeCCCHHHHHHHHhccCCcccccccceeEEEecCCCCCCceEEEEeeeecCCCCCCCCCcCccceEEEEEEEEe
Q 030202           18 GRACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLAIN   97 (181)
Q Consensus        18 ~~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~G~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~~D   97 (181)
                      -..+++| +|||++||++++||+++++|+|.+.+|++.+|     |++|.+++   . +   |      .+++|||+++|
T Consensus         4 v~~si~I-~Ap~~~VW~~l~d~~~~~~w~p~v~~~~~~~G-----G~vR~~~~---~-~---G------~~~~Erl~~~D   64 (146)
T 3f08_A            4 TTTSMEI-FGSTEQVWQLIGGFNSLPDWLPYIPSSKLTEG-----GRVRHLAN---P-D---G------ETIIERLEVFN   64 (146)
T ss_dssp             EEEEEEE-SSCHHHHHHHHCSTTCHHHHCTTCCEEEEEGG-----GTEEEEEC---T-T---S------CEEEEEEEEEE
T ss_pred             EEEEEEE-eCCHHHHHHHHhccccHHHhCCCeEEEEEeCC-----CeEEEEEe---C-C---C------CEEEEEEEEEe
Confidence            4578999 99999999999999999999999999998765     89999986   1 2   3      28999999999


Q ss_pred             cCCCeEEEEEeecccceeeEEEEEEEEE-cC-CceEEEEEEEEeeCCCCCHHH----HHHHHHHHHHHHHHHHHHH
Q 030202           98 AEEMTLTYSIVDGNVGFYGYVSTLTVAP-KE-NGCYIEWKYEVEPVKGWRLED----LDCFISSGLQVMARRMKEA  167 (181)
Q Consensus        98 ~~~~~~~y~v~~g~~p~~~~~~t~~v~p-~~-~gT~v~W~~~~~p~~~~~~~~----~~~~~~~gl~~l~~~le~~  167 (181)
                      +++++++|++++|++|+++|.++++|.| .+ +||+|+|+++|+|. +...+.    +..+|+.||++|++.+|..
T Consensus        65 ~~~~~~~y~iv~g~~~~~~~~~~~~v~p~~~~~gt~v~w~~~~~p~-g~~~~~~~~~~~~~~~~~L~~Lk~~~e~~  139 (146)
T 3f08_A           65 DKERYYTYSIMNAPFPVTNYLSTIQVKEGTESNTSLVEWSGTFTPV-AVSDEEAINLVHGIYSDGLKALQHAFLDL  139 (146)
T ss_dssp             TTTTEEEEEEEECSSSEEEEEEEEEEEECSSTTCEEEEEEEEEEES-SSCHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred             CCCCEEEEEEecCCCceeEEEEEEEEEEecCCCcEEEEEEEEEEeC-CCCHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            9999999999999999999999999999 34 57999999999994 444433    3578888888888887753

>3kl1_A PYL2, putative uncharacterized protein AT2G26040; abscisic acid receptor, crystal, high resolution, PP2C, HORM receptor; 1.55A {Arabidopsis thaliana} PDB: 3kdi_A* 3kdh_A 3nr4_A* 3ns2_A* 3nj0_A* 3nj1_A* 3nmh_A* 3kaz_A 3kb0_A* 3kb3_A* 3ujl_A* 3nmp_A* 3nmt_A* 3nmv_A*

Probab=99.96  E-value=2.4e-27  Score=186.95  Aligned_cols=152  Identities=18%  Similarity=0.253  Sum_probs=125.6

Q ss_pred             CCCCCCCCCeeeE-EEEEEeCCCHHHHHHHHhccCCcccccccceeEEEecCCCCCCceEEEEeeeecCCCCCCCCCcCc
Q 030202            7 HHGKQEQPKWQGR-ACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQS   85 (181)
Q Consensus         7 ~~~~~~~~~w~~~-v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~G~~~~vGsvR~~~~~~~~~~g~~G~~~~~   85 (181)
                      ||+..-.|.=+.+ +..+| +||+++||++++||++...|.|.|.+|++.+|+ +++|++|.+++.    +   |  .+ 
T Consensus        25 ~~~h~~~~~~~~~~~~~~I-~Apa~~vW~lv~df~~~~~w~p~I~s~e~~eGd-g~vGsVR~~t~~----~---G--~p-   92 (190)
T 3kl1_A           25 YHQFEPDPTTCTSLITQRI-HAPASVVWPLIRRFDNPERYKHFVKRCRLISGD-GDVGSVREVTVI----S---G--LP-   92 (190)
T ss_dssp             HSCCCCCTTEEEEEEEEEE-SSCHHHHHHHHHCTTCGGGTCSSEEEEEEEESS-SSTTCEEEEEEC----S---S--SS-
T ss_pred             HhccCCCCCceeEEEEEEe-cCCHHHHHHHHhCCCChhHcccccCEEEEEcCC-CCCCeEEEEEec----C---C--Cc-
Confidence            5665555554444 46778 999999999999999988888999999998886 679999999972    2   3  12 


Q ss_pred             cceEEEEEEEEecCCCeEEEEEeecccceeeEEEEEEEEEc-----CC-ceEEEEEEEEeeCCCCCHHHH----HHHHHH
Q 030202           86 VNWTKQKLLAINAEEMTLTYSIVDGNVGFYGYVSTLTVAPK-----EN-GCYIEWKYEVEPVKGWRLEDL----DCFISS  155 (181)
Q Consensus        86 ~~~~~Erl~~~D~~~~~~~y~v~~g~~p~~~~~~t~~v~p~-----~~-gT~v~W~~~~~p~~~~~~~~~----~~~~~~  155 (181)
                      ...++|||+++|+++++|+|++++|++|++.|.+++++.+.     ++ ||+|+|+++|+|..|...+.+    ..+|+.
T Consensus        93 ~~~vkErL~~iD~~~~~~sY~iieG~~~~~~Y~s~~~v~~~~~~~~~~~gt~V~Ws~~f~~p~g~~~e~~~~~~~~~~~~  172 (190)
T 3kl1_A           93 ASTSTERLEFVDDDHRVLSFRVVGGEHRLKNYKSVTSVNEFLNQDSGKVYTVVLESYTVDIPEGNTEEDTKMFVDTVVKL  172 (190)
T ss_dssp             CEEEEEEEEEEETTTTEEEEEEEEESSSCCSCEEEEEEEEEEC-CCCCEEEEEEEEEEEECCTTCCHHHHHHHHHHHHHH
T ss_pred             cceEEEEEEEEeccCCEEEEEEEecCCccccEEEEEEEEecccccCCCCcEEEEEEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            35899999999999999999999999999999999999984     44 699999999997777665444    578999


Q ss_pred             HHHHHHHHHHHHHhh
Q 030202          156 GLQVMARRMKEALQA  170 (181)
Q Consensus       156 gl~~l~~~le~~~~~  170 (181)
                      +|++|++.+|+.+..
T Consensus       173 gL~~L~~~~e~~~~~  187 (190)
T 3kl1_A          173 NLQKLGVAATSAPMH  187 (190)
T ss_dssp             HHHHHHHHHHHSCC-
T ss_pred             HHHHHHHHHhccccc
Confidence            999999999986543

>3oqu_A Abscisic acid receptor PYL9; RCAR1, hormone receptor; HET: A8S; 2.68A {Arabidopsis thaliana}

Probab=99.96  E-value=3.6e-27  Score=187.57  Aligned_cols=144  Identities=18%  Similarity=0.286  Sum_probs=122.9

Q ss_pred             CCeeeEEEEEEeCCCHHHHHHHHhccCCcccccccceeEEEecCCCCCCceEEEEeeeecCCCCCCCCCcCccceEEEEE
Q 030202           14 PKWQGRACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKL   93 (181)
Q Consensus        14 ~~w~~~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~G~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl   93 (181)
                      .+=...+..+| +|||++||++++||+++++|.|.|.+|++ +|+ +++|++|.+++.    +   |  .+ ...++|||
T Consensus        50 ~k~~~~V~~~I-~ApadkVW~lV~Df~~l~kW~P~V~s~ev-eGd-g~vGsVR~vt~~----~---G--~p-~~~vkErL  116 (205)
T 3oqu_A           50 NQCTSALVKHI-KAPLHLVWSLVRRFDQPQKYKPFVSRCTV-IGD-PEIGSLREVNVK----S---G--LP-ATTSTERL  116 (205)
T ss_dssp             TEEEEEEEEEE-SSCHHHHHHHHTCTTCGGGTCTTEEEEEC-CSS-CCTTCEEEEEEC----T---T--SS-CSEEEEEE
T ss_pred             cEEEEEEeeEE-cCCHHHHHHHHhCcCChhHcCccceEEEe-eCC-CCCCcEEEEEEc----C---C--Cc-cceEEEEE
Confidence            44445555588 99999999999999999999999999974 664 689999999972    2   3  22 35899999


Q ss_pred             EEEecCCCeEEEEEeecccceeeEEEEEEEEEcC-C---ceEEEEEEEEeeCCCCCHHHH----HHHHHHHHHHHHHHHH
Q 030202           94 LAINAEEMTLTYSIVDGNVGFYGYVSTLTVAPKE-N---GCYIEWKYEVEPVKGWRLEDL----DCFISSGLQVMARRMK  165 (181)
Q Consensus        94 ~~~D~~~~~~~y~v~~g~~p~~~~~~t~~v~p~~-~---gT~v~W~~~~~p~~~~~~~~~----~~~~~~gl~~l~~~le  165 (181)
                      +++|+++++|+|+|++|++|+++|.++++|.|.+ +   +|.+.|++.++|+.+...+.+    ..+|+.+|+.|++..|
T Consensus       117 ~~lDde~~~~sYsIieG~lpv~~Y~ati~V~p~~~dG~~~T~v~ws~~~D~p~g~t~e~~~~~v~~v~~~gL~~L~~~~e  196 (205)
T 3oqu_A          117 ELLDDEEHILGIKIIGGDHRLKNYSSILTVHPEIIEGRAGTMVIESFVVDVPQGNTKDETCYFVEALIRCNLKSLADVSE  196 (205)
T ss_dssp             EEEETTTTEEEEEEEEESSSCTTCEEEEEEEEECCCC-CEEEEEEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEECCCCEEEEEEEecCcceeEEEEEEEEEEccCCCCceEEEEEEEeccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999987 3   489999999998878777654    5789999999999999


Q ss_pred             HHHhh
Q 030202          166 EALQA  170 (181)
Q Consensus       166 ~~~~~  170 (181)
                      +.+.+
T Consensus       197 ~~~~~  201 (205)
T 3oqu_A          197 RLASQ  201 (205)
T ss_dssp             HHHHH
T ss_pred             Hhhhc
Confidence            97654

>3oji_A Abscisic acid receptor PYL3; crystal, PP2C, pyrabactin, HOR receptor; HET: PYV; 1.84A {Arabidopsis thaliana} PDB: 4ds8_A* 3klx_A* 4dsb_A* 4dsc_A*

Probab=99.96  E-value=2.3e-27  Score=186.16  Aligned_cols=151  Identities=21%  Similarity=0.252  Sum_probs=123.1

Q ss_pred             CCCCCCCCCCeeeEEEEEEeCCCHHHHHHHHhccCCcccccccceeEEEec-CCCC---CCceEEEEeeeecCCCCCCCC
Q 030202            6 DHHGKQEQPKWQGRACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQ-GISG---QPGCVRFCAGFKTPVDNKDDD   81 (181)
Q Consensus         6 ~~~~~~~~~~w~~~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~-G~~~---~vGsvR~~~~~~~~~~g~~G~   81 (181)
                      .||+..-.|.=+.++....|+||+++||++++||++++.|.|+|.+|++.+ |+++   .+|++|.+++.    .   | 
T Consensus        19 ~~~~~~~~~~~c~s~~~~~I~Ap~d~VWalVrdF~~p~~w~p~V~s~~~~e~Gdg~~~~~vGsVR~ltl~----~---G-   90 (189)
T 3oji_A           19 THHTFPRSPNTCTSLIAHRVDAPAHAIWRFVRDFANPNKYKHFIKSCTIRVNGNGIKEIKVGTIREVSVV----S---G-   90 (189)
T ss_dssp             HHSCCCCC-CEEEEEEEEEESSCHHHHHHHHSCTTCGGGTCTTEEEEEECCC----CCCSTTCEEEEEEC----S---S-
T ss_pred             HhcccCCCCCccceeEEEEEcCCHHHHHHHHhCCCChhhCccccceEEEEecCCCCccCCCCcEEEEEec----C---C-
Confidence            478887777777777444449999999999999999999999999999876 7543   29999999972    2   3 


Q ss_pred             CcCccceEEEEEEEEecCCCeEEEEEeecccceeeEEEEEEEEEc-----C----CceEEEEEEEEeeCCCCCHHHH---
Q 030202           82 HEQSVNWTKQKLLAINAEEMTLTYSIVDGNVGFYGYVSTLTVAPK-----E----NGCYIEWKYEVEPVKGWRLEDL---  149 (181)
Q Consensus        82 ~~~~~~~~~Erl~~~D~~~~~~~y~v~~g~~p~~~~~~t~~v~p~-----~----~gT~v~W~~~~~p~~~~~~~~~---  149 (181)
                       .+ ...++|||+.+|+++|+|+|+|++|++|+++|.++++|.|.     |    ++|++.|++.++|..+...+..   
T Consensus        91 -~P-~~~i~ErL~~lDde~~~~sY~Iieg~~pv~nY~StitV~~~~~~~~G~~~~~~T~v~es~~~D~P~g~t~e~~~~~  168 (189)
T 3oji_A           91 -LP-ASTSVEILEVLDEEKRILSFRVLGGEHRLNNYRSVTSVNEFVVLEKDKKKRVYSVVLESYIVDIPQGNTEEDTRMF  168 (189)
T ss_dssp             -SS-BSEEEEEEEEEETTTTEEEEEEEECSBSSCSCEEEEEEEEEEEECTTSCEEEEEEEEEEEEEECCTTSCHHHHHHH
T ss_pred             -Cc-CceEEEEEEEEeccCCEEEEEEEecCCccccEEEEEEEEeccccCCCccccCcEEEEEeEecCCCCCCCHHHHHHH
Confidence             22 34899999999999999999999999999999999999985     2    2599999999998777776655   


Q ss_pred             -HHHHHHHHHHHHHHHHH
Q 030202          150 -DCFISSGLQVMARRMKE  166 (181)
Q Consensus       150 -~~~~~~gl~~l~~~le~  166 (181)
                       ..+|+.+|++|++..|+
T Consensus       169 v~~v~~~gL~~L~~~~e~  186 (189)
T 3oji_A          169 VDTVVKSNLQNLAVISTA  186 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHhhc
Confidence             47799999999988774

>3p51_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 2.06A {Nitrosospira multiformis}

Probab=99.96  E-value=8.2e-28  Score=184.84  Aligned_cols=131  Identities=21%  Similarity=0.353  Sum_probs=114.0

Q ss_pred             eEEEEEEeCCCHHHHHHHHhccCCcccccccceeE-EEecCCC-CCCceEEEEeeeecCCCCCCCCCcCccceEEEEEEE
Q 030202           18 GRACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTC-IPIQGIS-GQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLA   95 (181)
Q Consensus        18 ~~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~-~~~~G~~-~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~   95 (181)
                      -.++++| +|||++||++++||+++ +|+|.+.+| ++++|++ ++||++|.+ .         |       .++|||++
T Consensus         4 v~~si~I-~Ap~~~VW~~v~Df~~~-~w~P~v~~s~e~~eg~~~~~vGsvR~~-g---------g-------~v~Erl~~   64 (160)
T 3p51_A            4 VYNSIVV-DAPVERVWSRIRNFHDF-SWAPSLIKSCKKVGGGGGYSVGARRLL-N---------G-------EFLDTLIA   64 (160)
T ss_dssp             EEEEEEE-SSCHHHHHHHHCCTTCC-TTCTTTCCCEEEESSCCTTCTTCEEEE-T---------T-------TEEEEEEE
T ss_pred             EEEEEEE-CCCHHHHHHHHhCcCCC-eEccCceEEEEEEecCCCCCCCCEEEE-C---------C-------EEEEEEEE
Confidence            3578999 99999999999999999 999999888 8777754 589999998 3         2       68999999


Q ss_pred             EecCCCeEEEEEeecccc-----eeeEEEEEEEEEcC-C-ceEEEEEEEEeeCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 030202           96 INAEEMTLTYSIVDGNVG-----FYGYVSTLTVAPKE-N-GCYIEWKYEVEPVKGWRLEDLDCFISSGLQVMARRMKEA  167 (181)
Q Consensus        96 ~D~~~~~~~y~v~~g~~p-----~~~~~~t~~v~p~~-~-gT~v~W~~~~~p~~~~~~~~~~~~~~~gl~~l~~~le~~  167 (181)
                      +|+++++|+|++++|++|     +++|.++++|.|.+ + ||+|+|+++|+|..+.....+..+|+.+|++|++.+|+.
T Consensus        65 ~D~~~~~~sY~ii~g~l~~~~~~~~~y~~~~~v~p~~~~ggt~V~w~~~~~~~~~~~~~~~~~~~~~~L~~Lk~~~e~~  143 (160)
T 3p51_A           65 YSEIERRIMYSMDEGPSPVSSGEIYNYVGNLHLLPVTIDDTTFVEWSGSWESASTEAVEYMNTVYRSLLADLAAEFTSE  143 (160)
T ss_dssp             EETTTTEEEEEEEECSTTSSTTTEEEEEEEEEEEEETTTTEEEEEEEEEEEESCSHHHHHHHHHHHHHHHHHHHHSCTT
T ss_pred             EcCCCcEEEEEEecCCCcccccceeEEEEEEEEEEecCCCCEEEEEEEEEEeCHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            999999999999999998     99999999999985 4 699999999999754334445788999999999988753

>2flh_A Cytokinin-specific binding protein; zeatin, pathogenesis-related proteins, multiple- ligand binding, plant protein; HET: ZEA; 1.20A {Vigna radiata} PDB: 3c0v_A*

Probab=99.95  E-value=1.3e-26  Score=177.27  Aligned_cols=139  Identities=17%  Similarity=0.301  Sum_probs=111.0

Q ss_pred             EEEEEEeCCCHHHHHHH-HhccCCc-ccccccc-eeEEEecCCCCCCceEEEEeeeecCCCCCCCCCcCccceEEEEEEE
Q 030202           19 RACEELTGVKAEQIWAF-LEDFFGL-DKWFPTL-TTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLA   95 (181)
Q Consensus        19 ~v~~~I~~Ap~e~VW~~-l~Df~~~-~~w~P~v-~~~~~~~G~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~   95 (181)
                      ..+++| +|||++||++ ++||+++ |+|+|.+ .+|++++|+ +++|++|.+++.    +   |  ... ..++|||+.
T Consensus         6 ~~e~~i-~a~a~kvw~~~v~d~~~l~pk~~P~~i~s~~~~eGd-gg~Gsvr~~~~~----~---g--~~~-~~~kErl~~   73 (155)
T 2flh_A            6 NTQTEL-SVRLEALWAVLSKDFITVVPKVLPHIVKDVQLIEGD-GGVGTILIFNFL----P---E--VSP-SYQREEITE   73 (155)
T ss_dssp             EEEEEE-SSCHHHHHHHHHTSCTTHHHHHCTTTEEEEEEEECS-SSTTCEEEEEEC----T---T--SSS-CEEEEEEEE
T ss_pred             EEEEEe-cCCHHHHHHHHhcccccccchhccccceEEEEEcCC-CCCCeEEEEEee----C---C--CCC-cEEEEEEEE
Confidence            457889 9999999999 7999999 9999954 667877886 579999999972    2   2  111 489999999


Q ss_pred             EecCCCeEEEEEeeccc---ceeeEEEEEEEEEcCC-ceEEEEEEEEeeCCCCCHHHHHHHHH--HHHHHHHHHHHHHHh
Q 030202           96 INAEEMTLTYSIVDGNV---GFYGYVSTLTVAPKEN-GCYIEWKYEVEPVKGWRLEDLDCFIS--SGLQVMARRMKEALQ  169 (181)
Q Consensus        96 ~D~~~~~~~y~v~~g~~---p~~~~~~t~~v~p~~~-gT~v~W~~~~~p~~~~~~~~~~~~~~--~gl~~l~~~le~~~~  169 (181)
                      +|+++++++|++++|++   |+++|.++++|.|.++ ||+++|+++|++..+..+ .+ ..+.  ..+..|.+.||+|++
T Consensus        74 iD~~~~~~~y~iieg~~l~~~~~~~~~~i~v~p~~~ggs~v~wt~~y~~~~~~~~-~~-~~~~~~~~~~~~~k~ie~yll  151 (155)
T 2flh_A           74 FDESSHEIGLQVIEGGYLSQGLSYYKTTFKLSEIEEDKTLVNVKISYDHDSDIEE-KV-TPTKTSQSTLMYLRRLERYLS  151 (155)
T ss_dssp             EETTTTEEEEEEEEEGGGGTTCSEEEEEEEEEEEETTEEEEEEEEEEEC--------C-CHHHHHHHHHHHHHHHHHHHC
T ss_pred             EeCCCCEEEEEEEeccccccCceEEEEEEEEEECCCCCEEEEEEEEEEECCCCcc-Ch-hHhhhHHHHHHHHHHHHHHHh
Confidence            99999999999999975   7999999999999875 699999999999865544 22 2355  778899999999998


Q ss_pred             hh
Q 030202          170 AY  171 (181)
Q Consensus       170 ~~  171 (181)
                      ++
T Consensus       152 ~~  153 (155)
T 2flh_A          152 NG  153 (155)
T ss_dssp             --
T ss_pred             hC
Confidence            75

>4a8u_A Major pollen allergen BET V 1-J; PR-10 protein; 1.16A {Betula pendula} PDB: 4a8v_A* 4a87_A* 4a81_A* 4a80_A* 4a83_A* 4a86_A* 4a85_A* 4a88_A 4a8g_A* 1b6f_A 1btv_A 1bv1_A 1fsk_A 4a84_A* 1llt_A 1fm4_A* 3k78_A 1qmr_A

Probab=99.94  E-value=7.4e-26  Score=173.85  Aligned_cols=140  Identities=14%  Similarity=0.190  Sum_probs=117.0

Q ss_pred             EEEEEEeCCCHHHHHHHH-hccCCc-cccccc-ceeEEEecCCCCCCceEEEEeeeecCCCCCCCCCcCccceEEEEEEE
Q 030202           19 RACEELTGVKAEQIWAFL-EDFFGL-DKWFPT-LTTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLA   95 (181)
Q Consensus        19 ~v~~~I~~Ap~e~VW~~l-~Df~~~-~~w~P~-v~~~~~~~G~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~   95 (181)
                      ..+++| +|||++||+++ +||+++ |+|+|. +.+|++++|++ ++|++|.+++.    .|  |   + ...++|||+.
T Consensus         6 ~~ei~i-~a~a~kvw~~~~~d~~~l~pk~~P~~i~s~e~~eGdg-g~Gsir~~~~~----~g--~---~-~~~~kErl~~   73 (159)
T 4a8u_A            6 ETEATS-VIPAARLFKAFILDGDNLFPKVAPQAISSVENIEGNG-GPGTIKKISFP----EG--F---P-FKYVKDRVDE   73 (159)
T ss_dssp             EEEEEE-SSCHHHHHHHHTTTHHHHHHHHCTTTCCEEEEEECSS-STTCEEEEECC----TT--S---S-CSEEEEEEEE
T ss_pred             EEEEEe-cCCHHHHHHHHhcCccccchhhCchhccEEEEEcCCC-CCceEEEEEEe----cC--C---C-ccEEEEEEEE
Confidence            468889 99999999998 999995 999994 78888888864 69999999972    23  2   2 4589999999


Q ss_pred             EecCCCeEEEEEeeccc---ceeeEEEEEEEEEcCC-ceEEEEEEEEeeCCCCC--HHHHHHHHHHHHHHHHHHHHHHHh
Q 030202           96 INAEEMTLTYSIVDGNV---GFYGYVSTLTVAPKEN-GCYIEWKYEVEPVKGWR--LEDLDCFISSGLQVMARRMKEALQ  169 (181)
Q Consensus        96 ~D~~~~~~~y~v~~g~~---p~~~~~~t~~v~p~~~-gT~v~W~~~~~p~~~~~--~~~~~~~~~~gl~~l~~~le~~~~  169 (181)
                      +|+++++++|++++|++   ++++|.++++|.|.++ ||+|+|+.+|++..+..  ++.+ ..+...+..|.+.+|+|++
T Consensus        74 iD~~~~~~~y~iiegd~l~~~~~~y~~ti~v~p~~~ggs~v~wt~~y~~~~~~~~~~~~~-k~~~~~~~~~~k~ie~yll  152 (159)
T 4a8u_A           74 VDHTNFKYSYSVIEGGPVGDTLEKISNEIKIVATPNGGSILKINNKYHTKGDHEVKAEQI-KASKEMGETLLRAVESYLL  152 (159)
T ss_dssp             EETTTTEEEEEEEEETTCBTTEEEEEEEEEEEECTTSCEEEEEEEEEEESSSCCC-CHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred             EccccCEEEEEEeeCCCCccceEEEEEEEEEEECCCCceEEEEEEEEEECCCCcCCHHHH-HHHHHHHHHHHHHHHHHHh
Confidence            99999999999999975   3899999999999876 69999999999987643  3333 3356677899999999987


Q ss_pred             hh
Q 030202          170 AY  171 (181)
Q Consensus       170 ~~  171 (181)
                      +.
T Consensus       153 ~n  154 (159)
T 4a8u_A          153 AH  154 (159)
T ss_dssp             HC
T ss_pred             hC
Confidence            64

>1e09_A PRU AV 1; allergen, major cherry allergen, pathogenesis-related protein, heteronuclear structure; NMR {Prunus avium} SCOP: d.129.3.1 PDB: 1h2o_A 2lpx_A

Probab=99.94  E-value=5.5e-26  Score=174.28  Aligned_cols=140  Identities=12%  Similarity=0.153  Sum_probs=118.6

Q ss_pred             EEEEEEeCCCHHHHHHHHh-ccCCc-ccccc-cceeEEEecCCCCCCceEEEEeeeecCCCCCCCCCcCccceEEEEEEE
Q 030202           19 RACEELTGVKAEQIWAFLE-DFFGL-DKWFP-TLTTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLA   95 (181)
Q Consensus        19 ~v~~~I~~Ap~e~VW~~l~-Df~~~-~~w~P-~v~~~~~~~G~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~   95 (181)
                      ..+++| +|||++||++++ ||+++ |+|+| .+.+|++++|++ ++|++|.+++.    +   |   ....+++|||+.
T Consensus         6 ~~e~~i-~ap~~~vw~~~~~d~~~~~pk~~P~~i~s~~~~eGdg-g~Gsvr~~~~~----~---G---~~~~~~kErl~~   73 (159)
T 1e09_A            6 ESEFTS-EIPPPRLFKAFVLDADNLVPKIAPQAIKHSEILEGDG-GPGTIKKITFG----E---G---SQYGYVKHKIDS   73 (159)
T ss_dssp             EEEEEE-SSCHHHHHHHHTTTHHHHHHHHCTTTEEEEEEEESSS-STTCEEEEEEC----C---S---SSCEEEEEEEEE
T ss_pred             EEEEEe-cCCHHHHHHHHhcCccccchhhChhhccEEEEEeCCC-CCceEEEEEec----C---C---CCceEEEEEEEE
Confidence            467889 999999999998 99864 99999 678899888854 89999999972    2   3   223589999999


Q ss_pred             EecCCCeEEEEEeeccc---ceeeEEEEEEEEEcCC-ceEEEEEEEEeeCCCCC--HHHHHHHHHHHHHHHHHHHHHHHh
Q 030202           96 INAEEMTLTYSIVDGNV---GFYGYVSTLTVAPKEN-GCYIEWKYEVEPVKGWR--LEDLDCFISSGLQVMARRMKEALQ  169 (181)
Q Consensus        96 ~D~~~~~~~y~v~~g~~---p~~~~~~t~~v~p~~~-gT~v~W~~~~~p~~~~~--~~~~~~~~~~gl~~l~~~le~~~~  169 (181)
                      +|+++++++|++++|++   ++++|.++++|.|.++ ||+++|+++|++..+..  ++.+ ......+..|.+.||++++
T Consensus        74 ~D~~~~~~~y~iieG~~~~~~~~~~~~~~~v~~~~~~gs~v~wt~~y~~~~~~~~~~~~~-~~~~~~~~~~~k~ie~yll  152 (159)
T 1e09_A           74 IDKENYSYSYTLIEGDALGDTLEKISYETKLVASPSGGSIIKSTSHYHTKGNVEIKEEHV-KAGKEKASNLFKLIETYLK  152 (159)
T ss_dssp             EETTTTEEEEEECCCTTTGGGEEEEEEEEEECCCTTSSEEEEEEEEEEECSSCCCCHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred             EcCCCCEEEEEEEecccCcccceEEEEEEEEEecCCCCEEEEEEEEEEECCCCCCCHHHH-HHHHHHHHHHHHHHHHHHH
Confidence            99999999999999986   7999999999999875 79999999999976543  4443 3568889999999999987


Q ss_pred             hh
Q 030202          170 AY  171 (181)
Q Consensus       170 ~~  171 (181)
                      +.
T Consensus       153 ~~  154 (159)
T 1e09_A          153 GH  154 (159)
T ss_dssp             HC
T ss_pred             hC
Confidence            64

>1tw0_A Pathogenesis-related class 10 protein SPE-16; seven antiparallel beta-sheet, plant protein; 2.20A {Pachyrhizus erosus} SCOP: d.129.3.1 PDB: 1txc_A*

Probab=99.94  E-value=1.9e-25  Score=170.95  Aligned_cols=140  Identities=14%  Similarity=0.070  Sum_probs=118.4

Q ss_pred             EEEEEEeCCCHHHHHHHHh-ccCCc-ccccccceeEEEecCCCCCCceEEEEeeeecCCCCCCCCCcCccceEEEEEEEE
Q 030202           19 RACEELTGVKAEQIWAFLE-DFFGL-DKWFPTLTTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLAI   96 (181)
Q Consensus        19 ~v~~~I~~Ap~e~VW~~l~-Df~~~-~~w~P~v~~~~~~~G~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~~   96 (181)
                      ..+++| +|||++||++++ ||+++ |+|+|.+.+|++++|++ ++|++|.+++.    +   |   .....++|||+.+
T Consensus         6 ~~e~~i-~a~a~kvw~~~~~d~~~~~pk~~~~i~s~~i~eG~g-~~Gsir~~~~~----~---G---~~~~~~kErl~~~   73 (157)
T 1tw0_A            6 RDETSS-SVAPAKLYKALTKDSDTIAQKIDGPIQSIELVEGNG-GVGTIKKITAN----E---G---DKTSFVLQKVDAI   73 (157)
T ss_dssp             EEEEEE-SSCHHHHHHHHHHTGGGGGGGSCSSEEEEEEEESSS-STTCEEEEEEE----E---T---TEEEEEEEEEEEE
T ss_pred             EEEEEe-cCCHHHHHHHHhcCcchhhhhHHhhccEEEEEeCCC-CCCeEEEEEee----C---C---CccceEEEEEEEE
Confidence            467889 999999999998 99965 99999999999998864 89999999973    2   3   1234799999999


Q ss_pred             ecCCCeEEEEEeeccc-c--eeeEEEEEEEEEcCC-ceEEEEEEEEeeCCCCC--HHHHHHHHHHHHHHHHHHHHHHHhh
Q 030202           97 NAEEMTLTYSIVDGNV-G--FYGYVSTLTVAPKEN-GCYIEWKYEVEPVKGWR--LEDLDCFISSGLQVMARRMKEALQA  170 (181)
Q Consensus        97 D~~~~~~~y~v~~g~~-p--~~~~~~t~~v~p~~~-gT~v~W~~~~~p~~~~~--~~~~~~~~~~gl~~l~~~le~~~~~  170 (181)
                      |+++++++|++++|+. +  +++|.++++|.|.++ ||+++|+++|++..+..  ++.+ ......+..|.+.||+++++
T Consensus        74 D~~~~~~~y~iieGd~~~~~~~~~~~~~~v~~~~~~gs~v~w~~~y~~~~~~~~~~~~~-~~~~~~~~~~~k~ie~yll~  152 (157)
T 1tw0_A           74 DEANLGYDYSIVGGTGLPESLEKLSFETKVVAGSGGGSISKVTLKFHTKGDAPLSDAVR-DDALAKGAGFFKAIEGYVLA  152 (157)
T ss_dssp             ETTTTEEEEEEEECTTSCTTEEEEEEEEEEEECSSSSEEEEEEEEEEESTTCCCCHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred             eccCCEEEEEEEecCCCccceEEEEEEEEEEecCCCCEEEEEEEEEEECCCCCCCHHHH-HHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999975 4  899999999999875 79999999999986543  3333 34678899999999999876


Q ss_pred             h
Q 030202          171 Y  171 (181)
Q Consensus       171 ~  171 (181)
                      .
T Consensus       153 ~  153 (157)
T 1tw0_A          153 N  153 (157)
T ss_dssp             C
T ss_pred             C
Confidence            5

>3ie5_A Phenolic oxidative coupling protein HYP-1; hypericin, ST JOHN'S WORT, depression, allergy, PR-10 protein, cytokinin, plant hormones; HET: PGE PG4 PE8 1PE; 1.69A {Hypericum perforatum} SCOP: d.129.3.0

Probab=99.94  E-value=1.6e-25  Score=173.01  Aligned_cols=140  Identities=17%  Similarity=0.186  Sum_probs=116.1

Q ss_pred             EEEEEEeCCCHHHHHHH-HhccCCc-cccccc-ceeEEEecCCCCCCceEEEEeeeecCCCCCCCCCcCccceEEEEEEE
Q 030202           19 RACEELTGVKAEQIWAF-LEDFFGL-DKWFPT-LTTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLA   95 (181)
Q Consensus        19 ~v~~~I~~Ap~e~VW~~-l~Df~~~-~~w~P~-v~~~~~~~G~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~   95 (181)
                      ..+++| +|||++||++ ++||+++ |+|+|. +.+|++++|+ +++|++|.+++.    .|  |   + .+.++|||++
T Consensus        13 ~~ev~i-~a~a~kvw~~~v~d~~~l~pk~~P~~v~s~e~~eGd-g~~Gsir~~~~~----~g--~---~-~~~~kErl~~   80 (165)
T 3ie5_A           13 VKEEES-PIAPHRLFKALVLERHQVLVKAQPHVFKSGEIIEGD-GGVGTVTKITFV----DG--H---P-LTYMLHKFDE   80 (165)
T ss_dssp             EEEEEE-SSCHHHHHHHHTTTHHHHHHHHCTTTEEEEEEEESS-SSTTCEEEEEEC----TT--S---S-CCEEEEEEEE
T ss_pred             EEEEEe-cCCHHHHHHHhcCCccccchhhCCcccceEEEecCC-CCCCeEEEEEec----CC--C---C-CceEEEEEEE
Confidence            457888 9999999999 5899999 999995 7778877886 689999999972    33  3   2 3589999999


Q ss_pred             EecCCCeEEEEEeeccc---ceeeEEEEEEEEEcCCceEEEEEEEEeeCCCC--CHHHHHHHHHHHHHHHHHHHHHHHhh
Q 030202           96 INAEEMTLTYSIVDGNV---GFYGYVSTLTVAPKENGCYIEWKYEVEPVKGW--RLEDLDCFISSGLQVMARRMKEALQA  170 (181)
Q Consensus        96 ~D~~~~~~~y~v~~g~~---p~~~~~~t~~v~p~~~gT~v~W~~~~~p~~~~--~~~~~~~~~~~gl~~l~~~le~~~~~  170 (181)
                      +|+++++++|++++|++   +++.|.++++|.+.++||+++|+++|++..+.  .++.+ ..+......|.+.+|+|+++
T Consensus        81 iD~~~~~~~Y~iieG~~l~~~~~~y~~~i~v~~~~ggs~vkwt~~y~~~~~~~~~~e~~-k~~~~~~~~~~K~ie~ylla  159 (165)
T 3ie5_A           81 IDAANFYCKYTLFEGDVLRDNIEKVVYEVKLEAVGGGSKGKITVTYHPKPGCTVNEEEV-KIGEKKAYEFYKQVEEYLAA  159 (165)
T ss_dssp             EEGGGTEEEEEEEEEGGGTTTEEEEEEEEEEEEETTEEEEEEEEEEEECTTCCCCHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred             EchhcCEEEEEEecCCCCccceEEEEEEEEEEeCCCceEEEEEEEEEECCCCCCCHHHH-HHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999974   49999999999954557999999999998764  34444 33566778899999999876


Q ss_pred             h
Q 030202          171 Y  171 (181)
Q Consensus       171 ~  171 (181)
                      .
T Consensus       160 n  160 (165)
T 3ie5_A          160 N  160 (165)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1icx_A Protein LLR18A, LLPR10.1A; 7-stranded beta sheet, C-terminal helix, allergen; 1.95A {Lupinus luteus} SCOP: d.129.3.1 PDB: 1ifv_A

Probab=99.94  E-value=1.3e-25  Score=171.57  Aligned_cols=141  Identities=15%  Similarity=0.152  Sum_probs=117.4

Q ss_pred             EEEEEEeCCCHHHHHHHHh-ccCCc-ccccccceeEEEecCCCCCCceEEEEeeeecCCCCCCCCCcCccceEEEEEEEE
Q 030202           19 RACEELTGVKAEQIWAFLE-DFFGL-DKWFPTLTTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLAI   96 (181)
Q Consensus        19 ~v~~~I~~Ap~e~VW~~l~-Df~~~-~~w~P~v~~~~~~~G~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~~   96 (181)
                      ..+++| +|||++||++++ ||+++ |+|+|.+.+|++++|++ ++|++|.+++.    +   |   .....++|||+.+
T Consensus         6 ~~e~~i-~a~a~kvw~~~~~d~~~~~pk~~~~i~s~~i~eG~g-~~Gsir~~~~~----~---G---~~~~~~kErl~~~   73 (155)
T 1icx_A            6 ENEQSS-TVAPAKLYKALTKDSDEIVPKVIEPIQSVEIVEGNG-GPGTIKKIIAI----H---D---GHTSFVLHKLDAI   73 (155)
T ss_dssp             EEEEEE-SSCHHHHHHHHTTTHHHHHHHHSTTEEEEEEEESSS-STTCEEEEEEE----S---S---SSEEEEEEEEEEE
T ss_pred             EEEEEe-cCCHHHHHHHHhcCcchhcchhhhhccEEEEEecCC-CCCeEEEEEEe----c---C---CcceeEEEEEEEE
Confidence            467888 999999999999 99865 99999999999998864 89999999972    3   3   1235799999999


Q ss_pred             ecCCCeEEEEEeeccc-c--eeeEEEEEEEEEcCC-ceEEEEEEEEeeCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 030202           97 NAEEMTLTYSIVDGNV-G--FYGYVSTLTVAPKEN-GCYIEWKYEVEPVKGWRLEDLDCFISSGLQVMARRMKEALQAY  171 (181)
Q Consensus        97 D~~~~~~~y~v~~g~~-p--~~~~~~t~~v~p~~~-gT~v~W~~~~~p~~~~~~~~~~~~~~~gl~~l~~~le~~~~~~  171 (181)
                      |+++++++|++++|+. +  +++|.++++|.|.++ ||+++|+++|++..+...+.....+...+..|.+.||+++++.
T Consensus        74 D~~~~~~~y~iieGd~~~~~~~~~~~~~~v~~~~~~gs~v~w~~~y~~~~~~~~~~~~~~~~~~~~~~~k~ie~yll~~  152 (155)
T 1icx_A           74 DEANLTYNYSIIGGEGLDESLEKISYESKILPGPDGGSIGKINVKFHTKGDVLSETVRDQAKFKGLGLFKAIEGYVLAH  152 (155)
T ss_dssp             EGGGTEEEEEEEEETTSCTTEEEEEEEEEEEECGGGCEEEEEEEEEEESSSSCCHHHHTTHHHHHHHHHHHHHHHHHHC
T ss_pred             eccCCEEEEEEEecCCCccceEEEEEEEEEEecCCCCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            9999999999999974 4  899999999999875 7999999999998654222222345778889999999998764

>2qim_A PR10.2B; trans-zeatin, cytokinin, plant hormones, plant protein, PR-1 protein, pathogenesis-related protein, allergen; HET: ZEA; 1.35A {Lupinus luteus} PDB: 3e85_A* 1xdf_A* 2k7h_A

Probab=99.94  E-value=2.1e-25  Score=170.91  Aligned_cols=140  Identities=15%  Similarity=0.123  Sum_probs=118.4

Q ss_pred             EEEEEEeCCCHHHHHHHHh-ccCCc-ccccccceeEEEecCCCCCCceEEEEeeeecCCCCCCCCCcCccceEEEEEEEE
Q 030202           19 RACEELTGVKAEQIWAFLE-DFFGL-DKWFPTLTTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLAI   96 (181)
Q Consensus        19 ~v~~~I~~Ap~e~VW~~l~-Df~~~-~~w~P~v~~~~~~~G~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~~   96 (181)
                      ..+++| +|||++||++++ ||+++ |+|+|.+.+|++++|++ ++|++|.+++.    +   |   .....++|||+.+
T Consensus         7 ~~e~~i-~a~a~kvw~~~~~d~~~~~pk~~~~i~s~~i~eGdg-g~Gsir~~~~~----~---g---~~~~~~kErl~~~   74 (158)
T 2qim_A            7 QDEYTS-TIAPAKLYKALVTDADIIIPKAVETIQSVEIVEGNG-GPGTIKKLTFI----E---G---GESKYVLHKIEAI   74 (158)
T ss_dssp             EEEEEE-SSCHHHHHHHHTTTHHHHHHHHCTTEEEEEEEESSS-STTCEEEEEEE----E---T---TEEEEEEEEEEEE
T ss_pred             EEEEEe-cCCHHHHHHHHhcCccchhhhHHhhCcEEEEEecCC-CCCeEEEEEEc----C---C---CcceeEEEEEEEE
Confidence            467888 999999999999 99976 99999999999988854 89999999973    2   3   1234799999999


Q ss_pred             ecCCCeEEEEEeeccc-c--eeeEEEEEEEEEcCC-ceEEEEEEEEeeCCCCC--HHHHHHHHHHHHHHHHHHHHHHHhh
Q 030202           97 NAEEMTLTYSIVDGNV-G--FYGYVSTLTVAPKEN-GCYIEWKYEVEPVKGWR--LEDLDCFISSGLQVMARRMKEALQA  170 (181)
Q Consensus        97 D~~~~~~~y~v~~g~~-p--~~~~~~t~~v~p~~~-gT~v~W~~~~~p~~~~~--~~~~~~~~~~gl~~l~~~le~~~~~  170 (181)
                      |+++++++|++++|+. +  +++|.++++|.|.++ ||+++|+++|++..+..  ++.+ ......+..|.+.||+++++
T Consensus        75 D~~~~~~~y~iieG~~~~~~~~~~~~~~~v~~~~~~gs~v~wt~~y~~~~~~~~~~~~~-~~~~~~~~~~~k~ie~yll~  153 (158)
T 2qim_A           75 DEANLGYNYSIVGGVGLPDTIEKISFETKLVEGANGGSIGKVTIKIETKGDAQPNEEEG-KAAKARGDAFFKAIESYLSA  153 (158)
T ss_dssp             EGGGTEEEEEEEEESSCCCSEEEEEEEEEEEECSTTCEEEEEEEEEEESTTCCCCHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred             ecCCCEEEEEEEeccCCccceEEEEEEEEEEecCCCCEEEEEEEEEEECCCCCCCHHHH-HHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999974 4  899999999999875 79999999999986543  3333 34678899999999999976


Q ss_pred             h
Q 030202          171 Y  171 (181)
Q Consensus       171 ~  171 (181)
                      .
T Consensus       154 ~  154 (158)
T 2qim_A          154 H  154 (158)
T ss_dssp             C
T ss_pred             C
Confidence            5

>2vq5_A S-norcoclaurine synthase; lyase, S- norcoclaurine biosynthesis, dopamine, hydroxybenzaldehyde; HET: MSE LDP HBA; 2.09A {Thalictrum flavum} PDB: 2vne_A*

Probab=99.93  E-value=3.8e-25  Score=175.67  Aligned_cols=137  Identities=19%  Similarity=0.264  Sum_probs=113.9

Q ss_pred             EEEEEeCCCHHHHHHH-Hh-ccCCc-cccccc-ceeEEEecCCCCCCceEEEEeeeecCCCCCCCCCcCccceEEEEEEE
Q 030202           20 ACEELTGVKAEQIWAF-LE-DFFGL-DKWFPT-LTTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLA   95 (181)
Q Consensus        20 v~~~I~~Ap~e~VW~~-l~-Df~~~-~~w~P~-v~~~~~~~G~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~   95 (181)
                      .+++| +|||++||++ ++ ||+++ |+|+|. +.+|+++ |+ |++|++|.+++.    +|      ....+++|||++
T Consensus        33 ~eveI-~apa~kvW~~~v~~df~~l~pk~~P~~i~s~e~~-Gd-Gg~GsIR~lt~~----~G------~~~~~vkErle~   99 (201)
T 2vq5_A           33 HELEV-AASADDIWTVYSWPGLAKHLPDLLPGAFEKLEII-GD-GGVGTILDMTFV----PG------EFPHEYKEKFIL   99 (201)
T ss_dssp             EEEEE-SSCHHHHHHHHTCGGGGGGHHHHSTTSCSEEEEE-SS-SSTTCEEEEECC----TT------CSSCEEEEEEEE
T ss_pred             EEEEe-cCCHHHHHhhhhcCCcccchhhhCcccceEEEEe-cC-CCCCeEEEEEec----CC------CcccEEEEEEEE
Confidence            68889 9999999999 57 99999 999996 4677888 76 589999999972    33      223589999999


Q ss_pred             EecCCCeEEEEEeeccc---ceeeEEEEEEEEEcCC-ceEEEEEEEEeeCCCC-C-HHHHHHHHHHHHHHHHHHHHHHHh
Q 030202           96 INAEEMTLTYSIVDGNV---GFYGYVSTLTVAPKEN-GCYIEWKYEVEPVKGW-R-LEDLDCFISSGLQVMARRMKEALQ  169 (181)
Q Consensus        96 ~D~~~~~~~y~v~~g~~---p~~~~~~t~~v~p~~~-gT~v~W~~~~~p~~~~-~-~~~~~~~~~~gl~~l~~~le~~~~  169 (181)
                      +|+++++++|++++|+.   ++++|.++++|.|.++ ||.++|+++|++..+. . ++..  .+...+..|.+.||++++
T Consensus       100 iDde~~~~sYsiieGd~l~~~~~~y~~tikv~p~~dggs~vkWt~~ye~~~~~~~~~e~~--~~~~~~~~~~KaiE~yLl  177 (201)
T 2vq5_A          100 VDNEHRLKKVQMIEGGYLDLGVTYYMDTIHVVPTGKDSCVIKSSTEYHVKPEFVKIVEPL--ITTGPLAAMADAISKLVL  177 (201)
T ss_dssp             EETTTTEEEEEEEEEGGGGTTEEEEEEEEEEEEEETTEEEEEEEEEEEECGGGHHHHTTT--CCSHHHHHHHHHHHHHHH
T ss_pred             EchhhCEEEEEEEecCccccceeEEEEEEEEEECCCCCeEEEEEEEEEECCCCCCCChhH--HHHHHHHHHHHHHHHHHH
Confidence            99999999999999973   7999999999999875 6999999999997644 1 1221  356778899999999997


Q ss_pred             hh
Q 030202          170 AY  171 (181)
Q Consensus       170 ~~  171 (181)
                      +.
T Consensus       178 an  179 (201)
T 2vq5_A          178 EH  179 (201)
T ss_dssp             SC
T ss_pred             hC
Confidence            75

>2le1_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, unknown function; NMR {Thermobifida fusca}

Probab=99.93  E-value=5.4e-25  Score=165.65  Aligned_cols=135  Identities=19%  Similarity=0.366  Sum_probs=111.1

Q ss_pred             eEEEEEEeCCCHHHHHHHHhccCCcccccccceeEEEecCCCCCCceEEEEeeeecCCCCCCCCCcCccceEEEEEEEEe
Q 030202           18 GRACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLAIN   97 (181)
Q Consensus        18 ~~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~G~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~~D   97 (181)
                      -..+++| +||+++||++++||.++++|+|.+.+|++.+|+++++|++|.+.+   + +   |      .+++|+|+.+|
T Consensus         4 v~~si~I-~ap~e~Vw~~l~d~~~~~~w~p~v~~~~~~~g~~~~~G~~r~~~~---~-~---G------~~~~e~i~~~d   69 (151)
T 2le1_A            4 LRRSVEV-AAPAADVWTLVGDFSAIHRWHPQVSAPTLRGASPHTPGAERVFGA---G-T---E------EELVERLVERD   69 (151)
T ss_dssp             EEEEEEE-SSCHHHHHHHHTTSGGGGGTCTTCCCEEEESSCTTSTTCEEEESS---S-S---S------SCEEEEEEEEE
T ss_pred             EEEEEEe-cCCHHHHHHHHhCcCcHHHhcCCceEEEEECCCCCCCCeEEEEEe---C-C---C------CEEEEEEEEEe
Confidence            3568899 999999999999999999999999999988776778999999875   1 2   3      17999999999


Q ss_pred             cCCCeEEEEEeecccceeeEEEEEEEEEcC-CceEEEEEEEEee-CCCCCHHHH---HHHHHHHHHHHHHHHHH
Q 030202           98 AEEMTLTYSIVDGNVGFYGYVSTLTVAPKE-NGCYIEWKYEVEP-VKGWRLEDL---DCFISSGLQVMARRMKE  166 (181)
Q Consensus        98 ~~~~~~~y~v~~g~~p~~~~~~t~~v~p~~-~gT~v~W~~~~~p-~~~~~~~~~---~~~~~~gl~~l~~~le~  166 (181)
                      +++++++|+++++++|++.|.++++|+|.+ +||+|+|+.+|+| ..+.....+   ...|+.+|++|++.+|+
T Consensus        70 ~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~gt~v~w~~~f~~~p~~~~~~~~~~~~~~~~~~L~~Lk~~~e~  143 (151)
T 2le1_A           70 ESARRLVYTMPDPPFPITNHRAVLEVVPRDDRHCTVVWTAMFDCSPETARELESVIGDGVFAVGLNALAERYGR  143 (151)
T ss_dssp             TTTTEEEEEEEECSSSEEEEEEEEEEEESSSSCEEEEEEEEEEECHHHHHHHHHHTTTTHHHHHHHHHHHHTTT
T ss_pred             CCCCEEEEEEecCCCCceeEEEEEEEEECCCCcEEEEEEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            988999999999888899999999999964 5799999999997 222222222   45677778877776654

>2wql_A Major allergen DAU C 1; pathogenesis-related protein, plant defense; HET: P4C; 2.70A {Daucus carota} PDB: 2bk0_A

Probab=99.92  E-value=9e-24  Score=161.47  Aligned_cols=139  Identities=17%  Similarity=0.180  Sum_probs=113.0

Q ss_pred             EEEEEEeCCCHHHHHHH-HhccCCc-ccccccceeEEEecCCCCCCceEEEEeeeecCCCCCCCCCcCccceEEEEEEEE
Q 030202           19 RACEELTGVKAEQIWAF-LEDFFGL-DKWFPTLTTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLAI   96 (181)
Q Consensus        19 ~v~~~I~~Ap~e~VW~~-l~Df~~~-~~w~P~v~~~~~~~G~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~~   96 (181)
                      ..++++ ++||+++|++ +.|++++ |+|+|.+.++..++|+ |++|++|.+++.    .|  |   + ...++|||..+
T Consensus         7 ~~E~~~-~v~a~kl~ka~v~d~~~l~Pk~~P~~iks~~veGd-g~~Gsir~~t~~----~g--~---~-~~~~kErle~i   74 (154)
T 2wql_A            7 SLEITS-SVSAEKIFSGIVLDVDTVIPKAATGAYKSVEVKGD-GGAGTVRIITLP----EG--S---P-ITTMTVRTDAV   74 (154)
T ss_dssp             EEEEEE-SSCHHHHHHHHTTTHHHHHHHHSTTTCSEEEEESS-SSTTCEEEEECC----TT--C---S-CCEEEEEEEEE
T ss_pred             EEEEEe-cCCHHHHHHHHhhcccccchhhcccceeEEEEECC-CCCCeEEEEEEc----CC--C---C-ceEEEEEEEEE
Confidence            567888 9999999986 5899997 9999976666556775 579999999972    22  2   2 35899999999


Q ss_pred             ecCCCeEEEEEeeccc---ceeeEEEEEEEEEcCC-ceEEEEEEEEeeCCCC--CHHHHHHHHHHHHHHHHHHHHHHHhh
Q 030202           97 NAEEMTLTYSIVDGNV---GFYGYVSTLTVAPKEN-GCYIEWKYEVEPVKGW--RLEDLDCFISSGLQVMARRMKEALQA  170 (181)
Q Consensus        97 D~~~~~~~y~v~~g~~---p~~~~~~t~~v~p~~~-gT~v~W~~~~~p~~~~--~~~~~~~~~~~gl~~l~~~le~~~~~  170 (181)
                      |+++++++|++++|+.   +++.|..+++|.|.++ ||.++|+.+|++..+.  .++.+ ........+|.+.+|+||+|
T Consensus        75 D~~~~~~~y~iieGd~l~~~~~~~~~~ikv~p~~~ggsvvk~t~~Y~~~~~~~~~ee~~-~~~~~~~~~~~KaiEayLla  153 (154)
T 2wql_A           75 NKEALSYDSTVIDGDILLGFIESIETHMVVVPTADGGSITKTTAIFHTKGDAVVPEENI-KFADAQNTALFKAIEAYLIA  153 (154)
T ss_dssp             ETTTTEEEEEEEESGGGTTTEEEEEEEEEEEECTTSCEEEEEEEEEEESTTCCCCHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred             ehhhCEEEEEEEeccccccceEEEEEEEEEeeCCCCcEEEEEEEEEEECCCCCCCHHHH-HHHHHHHHhHHHHHHHHHhc
Confidence            9999999999999973   6999999999999987 5999999999987653  33333 33455567889999999875

>3tvq_A Multifunctional cyclase-dehydratase-3-O-methyl TR TCMN; tetracenomycin, aromatase, taxifolin, dihyroquercet helix-GRIP fold; HET: DQH; 1.67A {Streptomyces glaucescens} PDB: 2rer_A 2res_A 2rez_A

Probab=99.77  E-value=5.1e-17  Score=125.53  Aligned_cols=140  Identities=12%  Similarity=0.180  Sum_probs=101.8

Q ss_pred             eEEEEEEeCCCHHHHHHHHhccCCcccccccceeEEEecCCCCCCceEEEE-eeeecCCCCCCCCCcCccceEEEEEEEE
Q 030202           18 GRACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFC-AGFKTPVDNKDDDHEQSVNWTKQKLLAI   96 (181)
Q Consensus        18 ~~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~G~~~~vGsvR~~-~~~~~~~~g~~G~~~~~~~~~~Erl~~~   96 (181)
                      -..++.| +||+++||+++.|+.+||+|+|.+..++++++++   +.+|.. ..  .+..+  |  . ...+..++.  +
T Consensus         5 v~~si~I-~a~~~~v~~lv~Dv~~~p~w~p~~~~~~~~~~~~---~~~~~~l~~--~~~~~--G--~-~~~~ts~~~--~   71 (169)
T 3tvq_A            5 TDNSIVV-NAPFELVWDVTNDIEAWPELFSEYAEAEILRQDG---DGFDFRLKT--RPDAN--G--R-VWEWVSHRV--P   71 (169)
T ss_dssp             EEEEEEE-SSCHHHHHHHHTCGGGHHHHCTTEEEEEEEEEET---TEEEEEEEE--CCCTT--S--C-CCEEEEEEE--E
T ss_pred             EEEEEEe-cCCHHHHHHHHHhhhHHHHHHhheeEEEEEecCC---CEEEEEEEE--EecCC--C--e-EEEEEEEEE--E
Confidence            4568889 9999999999999999999999999999876533   233332 11  01122  3  1 123444553  6


Q ss_pred             ecCCCeEEEEEeecccceeeEEEEEEEEEcCCceEEEEEEEEeeCCC--CCH----HHHHHHHHHHHHHHHHHHHHHHhh
Q 030202           97 NAEEMTLTYSIVDGNVGFYGYVSTLTVAPKENGCYIEWKYEVEPVKG--WRL----EDLDCFISSGLQVMARRMKEALQA  170 (181)
Q Consensus        97 D~~~~~~~y~v~~g~~p~~~~~~t~~v~p~~~gT~v~W~~~~~p~~~--~~~----~~~~~~~~~gl~~l~~~le~~~~~  170 (181)
                      |+..+++.|+.+... |++.|.++++|+|.++||+|+|..+|+..++  ...    ..+...+..+|++|++.+|+...+
T Consensus        72 d~~~~~I~~~~l~~g-Pf~~~~g~W~f~p~~~gt~V~~~~df~~~~~~p~~~~~~~~av~~~~~~~L~~LK~~aE~~~~~  150 (169)
T 3tvq_A           72 DKGSRTVRAHRVETG-PFAYMNLHWTYRAVAGGTEMRWVQEFDMKPGAPFDNAHMTAHLNTTTRANMERIKKIIEDRHRE  150 (169)
T ss_dssp             EGGGTEEEEEESSCT-TEEEEEEEEEEEEETTEEEEEEEEEEEECTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCcEEEEEEcCCC-ChhheeeEEEEEECCCCEEEEEEEEEEecCCCcccHHHHHHHHHhhHHHHHHHHHHHHhhhhhh
Confidence            787889999876544 8999999999999998899999988875422  222    233466888999999999987755


Q ss_pred             h
Q 030202          171 Y  171 (181)
Q Consensus       171 ~  171 (181)
                      +
T Consensus       151 ~  151 (169)
T 3tvq_A          151 G  151 (169)
T ss_dssp             H
T ss_pred             c
Confidence            5

>3tl1_A WHIE ORF VI, polyketide cyclase; helix-GRIP fold, polyketide C9-C14 aromatase/cyclase, linear beta-ketone intermediate; HET: JRO; 1.80A {Streptomyces coelicolor} PDB: 3tvr_A 2kf2_A

Probab=99.75  E-value=1.6e-16  Score=121.59  Aligned_cols=139  Identities=10%  Similarity=0.151  Sum_probs=100.5

Q ss_pred             eEEEEEEeCCCHHHHHHHHhccCCcccccccceeEEEecCCCCCCceEEEE-eeeecCCCCCCCCCcCccceEEEEEEEE
Q 030202           18 GRACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFC-AGFKTPVDNKDDDHEQSVNWTKQKLLAI   96 (181)
Q Consensus        18 ~~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~G~~~~vGsvR~~-~~~~~~~~g~~G~~~~~~~~~~Erl~~~   96 (181)
                      .+.++.| +|||++||+++.|+.+||+|+|.+..+++++.++ ..-..|.. ..    ..+  |  . ...+..++  .+
T Consensus         5 v~~si~I-~a~~~~V~~lV~Dve~yP~~~p~~~~~~vl~~~~-~~~~~rl~~~~----~~~--G--~-~~~~ts~~--~~   71 (159)
T 3tl1_A            5 TDNEITI-AAPMELVWNMTNDIEKWPGLFSEYASVEVLGRDD-DKVTFRLTMHP----DAD--G--K-VWSWVSER--VA   71 (159)
T ss_dssp             EEEEEEE-SSCHHHHHHHHTCGGGHHHHCSSEEEEEEEEECS-SEEEEEEEECC----CTT--S--C-CCEEEEEE--EE
T ss_pred             eEEEEEe-cCCHHHHHHHHHhHHHhhhhhhCceEEEEEecCC-CEEEEEEEEEe----ccC--c--e-EEEEEEEE--EE
Confidence            4568889 9999999999999999999999999999876432 22244433 01    012  3  1 12233444  47


Q ss_pred             ecCCCeEEEEEeecccceeeEEEEEEEEEcCCceEEEEEEEEeeCCC--CCH----HHHHHHHHHHHHHHHHHHHHHHhh
Q 030202           97 NAEEMTLTYSIVDGNVGFYGYVSTLTVAPKENGCYIEWKYEVEPVKG--WRL----EDLDCFISSGLQVMARRMKEALQA  170 (181)
Q Consensus        97 D~~~~~~~y~v~~g~~p~~~~~~t~~v~p~~~gT~v~W~~~~~p~~~--~~~----~~~~~~~~~gl~~l~~~le~~~~~  170 (181)
                      |+.++++.|+.+... |++.+.++++|+|.++||+|+|..+|+...+  ...    +.+...+...|++|++.+|+...+
T Consensus        72 d~~~~~I~~~~~~~g-Pf~~l~g~W~f~p~~~gt~V~~~~df~~~~~~p~~~~~~~~~~~~~~~~~L~~lK~~~E~~~~~  150 (159)
T 3tl1_A           72 DPVTRTVRAQRVETG-PFQYMNIVWEYAETAEGTVMRWTQDFAMKPDAPVDDAWMTDNINRNSRTQMALIRDRIEQAAGE  150 (159)
T ss_dssp             ETTTTEEEEEESSCT-TEEEEEEEEEEEEETTEEEEEEEEEEEECTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCEEEEEEccCC-ChhhccCEEEEEECCCCEEEEEEEEEEecCCCCCCHHHHHHHHHhhHHHHHHHHHHHHhhhhhh
Confidence            888889999987433 7899999999999988999999988875432  222    233456777889999988876543

>2d4r_A Hypothetical protein TTHA0849; start domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.40A {Thermus thermophilus} SCOP: d.129.3.6

Probab=99.72  E-value=4.7e-16  Score=113.24  Aligned_cols=137  Identities=11%  Similarity=0.112  Sum_probs=95.1

Q ss_pred             eEEEEEEeCCCHHHHHHHHhccCCcccccccceeEEEecCCCCCCceEEEEeeeecCCCCCCCCCcCccceEEEEEEEEe
Q 030202           18 GRACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLAIN   97 (181)
Q Consensus        18 ~~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~G~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~~D   97 (181)
                      -..+++| +||+++||+++.|+.++++|+|.+.+++.+++.++  |....+... .   +  |  ..  .....+++..+
T Consensus         4 ~~~~~~i-~ap~~~V~~~l~d~~~~~~w~p~~~~~~~~~~~~~--g~~~~~~~~-~---~--g--~~--~~~~~~~~~~~   70 (147)
T 2d4r_A            4 VRAERYI-PAPPERVYRLAKDLEGLKPYLKEVESLEVVAREGA--RTRSRWVAV-A---M--G--KK--VRWLEEEEWDD   70 (147)
T ss_dssp             EEEEEEE-SSCHHHHHHHHHCHHHHGGGCTTEEEEEEEEEETT--EEEEEEEEE-E---T--T--EE--EEEEEEEEEET
T ss_pred             EEEEEEe-CCCHHHHHHHHhChhhhhhhcccccEEEEEEeCCC--ccEEEEEEE-e---C--C--ce--EEEEEEEEEcC
Confidence            3568889 99999999999999999999999988877654322  433333321 1   1  2  11  13455565554


Q ss_pred             cCCCeEEEEEeecccceeeEEEEEEEEEcCCceEEEEEEEEeeCCCC----CHHHHHHHHHHHHHHHHHHHHHHHhh
Q 030202           98 AEEMTLTYSIVDGNVGFYGYVSTLTVAPKENGCYIEWKYEVEPVKGW----RLEDLDCFISSGLQVMARRMKEALQA  170 (181)
Q Consensus        98 ~~~~~~~y~v~~g~~p~~~~~~t~~v~p~~~gT~v~W~~~~~p~~~~----~~~~~~~~~~~gl~~l~~~le~~~~~  170 (181)
                       .++++.|++.+|++  ..+.++++|+|.++||+|+|++++++..+.    ....+...++.+++.+.+.|++++++
T Consensus        71 -~~~~i~~~~~~g~~--~~~~~~~~~~~~~~gT~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~e~  144 (147)
T 2d4r_A           71 -ENLRNRFFSPEGDF--DRYEGTWVFLPEGEGTRVVLTLTYELTIPIFGGLLRKLVQKLMQENVESLLKGLEERVLA  144 (147)
T ss_dssp             -TTTEEEEEEEEESC--SEEEEEEEEEECSSSEEEEEEEEEECCCTTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -CCcEEEEEeccCCh--hheEEEEEEEECCCCcEEEEEEEEecCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence             47899999987754  667889999999889999999999975322    12223345566666666666666654

>3tfz_A Cyclase; helix-GRIP, BET V1-like superfamily, biosynthetic protein; HET: CXS; 2.39A {Streptomyces SP}

Probab=99.71  E-value=8.6e-16  Score=118.10  Aligned_cols=137  Identities=12%  Similarity=0.123  Sum_probs=94.8

Q ss_pred             eEEEEEEeCCCHHHHHHHHhccCCcccccccceeEEEecCCCCCCceEEEEeeeecCCCCCCCCCcCccceEEEEEEEEe
Q 030202           18 GRACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLAIN   97 (181)
Q Consensus        18 ~~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~G~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~~D   97 (181)
                      -..+++| +||+++||+++.|+++||+|+|.+.+++++++.++.. ..|....     .+  |  .  ......++ .+|
T Consensus         7 v~~si~I-~ap~~~V~~~v~D~~~~p~~~P~~~~~~v~~~~~~~~-~~~~~~~-----~~--G--~--~~~~~s~~-~~~   72 (172)
T 3tfz_A            7 VEHTVTV-AAPADLVWEVLADVLGYADIFPPTEKVEILEEGQGYQ-VVRLHVD-----VA--G--E--INTWTSRR-DLD   72 (172)
T ss_dssp             EEEEEEE-SSCHHHHHHHHHCGGGHHHHCSSEEEEEEEEEETTEE-EEEEEEE-----ET--T--E--EEEEEEEE-EEE
T ss_pred             EEEEEEe-CCCHHHHHHHHHhHHHHHhhCcccceEEEEecCCCEE-EEEEEEe-----cC--C--E--EEEEEEEE-EEe
Confidence            3568889 9999999999999999999999999998876533221 2333321     12  3  1  11223333 367


Q ss_pred             cCCCeEEEEEeecccceeeEEEEEEEEEcC-CceEEEEEEEEeeCCCC---------C-H---HHH----HHHHHHHHHH
Q 030202           98 AEEMTLTYSIVDGNVGFYGYVSTLTVAPKE-NGCYIEWKYEVEPVKGW---------R-L---EDL----DCFISSGLQV  159 (181)
Q Consensus        98 ~~~~~~~y~v~~g~~p~~~~~~t~~v~p~~-~gT~v~W~~~~~p~~~~---------~-~---~~~----~~~~~~gl~~  159 (181)
                      +..+++.|+.++++.|++.+.++++|.|.+ ++|+|+|+.+|+.....         . +   ..+    ..-++..|+.
T Consensus        73 ~~~~~i~~~~~~~~gpf~~~~g~w~f~~~~~~~t~V~~~~~~~~~~~~l~~~lg~~~~~~~~~~~~~~~l~~~~~~~L~~  152 (172)
T 3tfz_A           73 PARRVIAYRQLETAPIVGHMSGEWRAFTLDAERTQLVLTHDFVTRAAGDDGLVAGKLTPDEAREMLEAVVERNSVADLNA  152 (172)
T ss_dssp             TTTTEEEEEEEECCTTEEEEEEEEEEEEEETTEEEEEEEEEEEECCCCTTSSBTTTBCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEEEeeCCCChhhcEEEEEEEECCCCcEEEEEEEEEEEcChhHHHhhccccCchhhHHHHHHHHhcccHHHHHH
Confidence            777899999997666889999999999986 57999999998854321         0 1   112    2334556777


Q ss_pred             HHHHHHHHH
Q 030202          160 MARRMKEAL  168 (181)
Q Consensus       160 l~~~le~~~  168 (181)
                      |++.+|++.
T Consensus       153 lk~~aE~~~  161 (172)
T 3tfz_A          153 VLGEAERRV  161 (172)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            777777654

>3ijt_A SMU.440, putative uncharacterized protein; hypothetical protein, unknown function; 2.38A {Streptococcus mutans} SCOP: d.129.3.9 PDB: 2b79_A

Probab=99.69  E-value=1.4e-15  Score=115.82  Aligned_cols=134  Identities=10%  Similarity=0.016  Sum_probs=95.6

Q ss_pred             CCeeeEEEEEEeCCCHHHHHHHHhccCCcccccccceeEEEecCCCCCCceEEEEeeeecCCCCCCCCCcCccceEEEEE
Q 030202           14 PKWQGRACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKL   93 (181)
Q Consensus        14 ~~w~~~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~G~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl   93 (181)
                      .-|+=+.+++| +|||++||+++.||.++++|.|.+.++.. +|+ -.+|+.+.+..     .+  |      ..+.++|
T Consensus        16 ~~~~i~~si~I-~Appe~VW~~ltD~~~~~~W~p~v~~~~~-~G~-~~~G~~~~~~~-----~~--~------~~~~~~v   79 (155)
T 3ijt_A           16 GSMKFSFELAV-NTKKEDAWTYYSQVNQWFVWEGDLEQISL-EGE-FTTGQKGKMKM-----ED--M------PELAFTL   79 (155)
T ss_dssp             CCEEEEEEEEE-SSCHHHHHHHHHCGGGGGGTSTTEEEEEE-SSS-SSTTCEEEEEE-----TT--S------CCEEEEE
T ss_pred             CcEEEEEEEEE-cCCHHHHHHHHhCcccccccchhhEeeec-cCC-CCCCCEEEEEe-----CC--C------CcEEEEE
Confidence            36778889999 99999999999999999999999887764 553 47898877764     22  2      1688899


Q ss_pred             EEEecCCCeEEEEEeecccceeeEEEEEEEEEcC-CceEEEEEEEEeeCCCCCHHH--HHHHHHHHHHHHHHHHHHHH
Q 030202           94 LAINAEEMTLTYSIVDGNVGFYGYVSTLTVAPKE-NGCYIEWKYEVEPVKGWRLED--LDCFISSGLQVMARRMKEAL  168 (181)
Q Consensus        94 ~~~D~~~~~~~y~v~~g~~p~~~~~~t~~v~p~~-~gT~v~W~~~~~p~~~~~~~~--~~~~~~~gl~~l~~~le~~~  168 (181)
                      +++++ +++|+|+..   +|+..+..+++|+|.+ ++|+|+|+.+|.... ..+..  +...+..+++...++|++++
T Consensus        80 ~~~~p-~~~~~~~~~---~p~~~~~~~h~l~p~~~ggTrvt~~~~~~G~~-~~~~~~~~~~~i~~~~~~~l~~LK~~a  152 (155)
T 3ijt_A           80 VEVRE-NQCFSDLTA---TPFGNVLFEHEILENPDGTISLRHSVSLTDSD-TTEEALAFLKQIFADVPESVGKLKQIL  152 (155)
T ss_dssp             CCCBT-TTEEEEEEE---ETTEEEEEEEEEEECTTSCEEEEEEEEESCCS-CCHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred             EEEeC-CcEEEEEEe---cCCeEEEEEEEEEEcCCCcEEEEEEEEEECCC-cchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99998 568999743   4445667788999975 579999999996321 11212  22334444444444444444

>1vjh_A BET V I allergen family; structural genomics, center for eukaryotic structural genomics, protein structure initiative, CESG, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.129.3.1 PDB: 2q3q_A

Probab=99.67  E-value=3.5e-15  Score=109.44  Aligned_cols=107  Identities=13%  Similarity=0.238  Sum_probs=86.1

Q ss_pred             EEEEEEeCCCHHHHHHHHhccCCcccccccceeEEEecCCCCCCceEEEEeeeecCCCCCCCCCcCccceEEEEEEEEec
Q 030202           19 RACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLAINA   98 (181)
Q Consensus        19 ~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~G~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~~D~   98 (181)
                      ..+++| ++||+++|+++.+++.+| |.+              +       +         .       .   ||.++|+
T Consensus         8 ~~e~~i-~~~a~k~w~~~~~~~~~p-~g~--------------~-------G---------~-------~---~ie~iD~   45 (122)
T 1vjh_A            8 SVKFDV-KCPADKFFSAFVEDTNRP-FEK--------------N-------G---------K-------T---EIEAVDL   45 (122)
T ss_dssp             EEEEEE-SSCHHHHHHHHHHHTTSC-SST--------------T-------C---------E-------E---EEEEEET
T ss_pred             EEEEEe-cCCHHHHHHHHhhcccCC-ccC--------------C-------C---------c-------c---EEEEEec
Confidence            357888 999999999999986666 311              1       1         1       2   8899999


Q ss_pred             CCCeEEEEEeecccc--eeeEEEEEEEEEc--CCceEEEEEEEEeeCCCC--CHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 030202           99 EEMTLTYSIVDGNVG--FYGYVSTLTVAPK--ENGCYIEWKYEVEPVKGW--RLEDLDCFISSGLQVMARRMKEALQAY  171 (181)
Q Consensus        99 ~~~~~~y~v~~g~~p--~~~~~~t~~v~p~--~~gT~v~W~~~~~p~~~~--~~~~~~~~~~~gl~~l~~~le~~~~~~  171 (181)
                      ++++++|++++|+++  ++.|..+++|.|.  ++||.++|+.+|+...+.  .++.+    ...+..|.+.+|+|+++.
T Consensus        46 ~~~~~~y~iieGd~~~~~~~~~~~~~v~~~~~~~gs~vkwt~~ye~~~~~~~~p~~~----~~~~~~~~k~ie~yll~~  120 (122)
T 1vjh_A           46 VKKTMTIQMSGSEIQKYFKTLKGSIAVTPIGVGDGSHVVWTFHFEKVHKDIDDPHSI----IDESVKYFKKLDEAILNF  120 (122)
T ss_dssp             TTTEEEEEEECTTGGGTEEEEEEEEEEEECSSSSCEEEEEEEEEEESSTTSCCSHHH----HHHHHHHHHHHHHHHHHC
T ss_pred             ccCEEEEEEEEccccccEEEEEEEEEEEEecCCCCeEEEEEEEEEECCCCCCCHHHH----HHHHHHHHHHHHHHHhhC
Confidence            999999999999874  8999999999998  568999999999976543  33333    456678999999999874

>1t17_A Conserved hypothetical protein; beta-alpha-beta-BETA-beta-BETA-beta-BETA-helix, structural G protein structure initiative, PSI, NESG; NMR {Caulobacter crescentus} SCOP: d.129.3.6

Probab=99.61  E-value=2.4e-14  Score=106.82  Aligned_cols=138  Identities=12%  Similarity=0.058  Sum_probs=96.2

Q ss_pred             eEEEEEEeCCCHHHHHHHHhccCCcccccccceeEEEecCCC-CC-CceEEEEeeeecCCCCCCCCCcCccceEEEEEEE
Q 030202           18 GRACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGIS-GQ-PGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLA   95 (181)
Q Consensus        18 ~~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~G~~-~~-vGsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~   95 (181)
                      -+.+++| +||+++||+++.|+.++|+|+|.+.++++++..+ ++ -+....+...    .+  |  .  ......+++ 
T Consensus         4 ~~~s~~i-~ap~~~v~~~v~D~~~~p~~~p~~~~~~v~~~~~~~g~~~~~~~~~~~----~~--~--~--~~~~~~~v~-   71 (148)
T 1t17_A            4 HVVTKVL-PYTPDQLFELVGDVDAYPKFVPWITGMRTWNGRVDGAVSTVDAEAQVG----FS--F--L--REKFATRVR-   71 (148)
T ss_dssp             EEEEEEE-SSCTHHHHHHHTTTTCCSSCCSSCCCCCEEEEEEETTEEEEEEEEECS----TT--S--S--CCEEEEEEE-
T ss_pred             EEEEEEe-cCCHHHHHHHHHHHhhHHhhCCCcCeeEEEEecCCCCCceEEEEEEEE----ec--c--e--eEEEEEEEE-
Confidence            3568889 9999999999999999999999999888765221 11 1222222221    11  2  1  124555666 


Q ss_pred             EecCCCeEEEEEeecccceeeEEEEEEEEEcCCceEEEEEEEEeeCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 030202           96 INAEEMTLTYSIVDGNVGFYGYVSTLTVAPKENGCYIEWKYEVEPVKGWRLEDLDCFISSGLQVMARRMKEALQ  169 (181)
Q Consensus        96 ~D~~~~~~~y~v~~g~~p~~~~~~t~~v~p~~~gT~v~W~~~~~p~~~~~~~~~~~~~~~gl~~l~~~le~~~~  169 (181)
                      +++.++++.++.++|+  ++.+.+.++|+|.++||+|++..+|++..+.....+..++...++.|.+.+++++.
T Consensus        72 ~~~~~~~i~~~~~~G~--f~~~~g~w~f~~~~~gt~v~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~f~~r~~  143 (148)
T 1t17_A           72 RDKDARSIDVSLLYGP--FKRLNNGWRFMPEGDATRVEFVIEFAFKSALLDAMLAANVDRAAGKLIACFEARAQ  143 (148)
T ss_dssp             EETTTCEEEEEESSTT--SSCEEEEEEEEEETTEEEEEEEEEECCSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EcCCCcEEEEEECCCC--hhccEEEEEEEECCCCeEEEEEEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5776669999999874  67789999999998889999999999763221222345567777777777777664

>2pcs_A Conserved protein; structural genomics, unknown function, ligand binding, PSI-2 structure initiative; HET: UNL; 2.40A {Geobacillus kaustophilus} SCOP: d.129.3.10

Probab=99.51  E-value=1.5e-13  Score=103.54  Aligned_cols=144  Identities=15%  Similarity=0.068  Sum_probs=89.5

Q ss_pred             eEEEEEEeCCCHHHHHHHHhccCCcccccccceeEEEecCCCCCCceEEEEeeeecCCCCCCCCCcCccceE--EEEEEE
Q 030202           18 GRACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWT--KQKLLA   95 (181)
Q Consensus        18 ~~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~G~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~--~Erl~~   95 (181)
                      =..+++| +||+++||+++.|+.++++|+|.+.+++...++.    ....+..   + .+  +  .  ...+  +-++++
T Consensus         5 i~~~~~i-~ap~e~Vw~~l~D~e~~~~w~p~~~~~~~~~~~~----~~~~~~~---~-~g--~--~--~~~~~~~~~~~~   69 (162)
T 2pcs_A            5 GNGSIEL-KGTVEEVWSKLMDPSILSKCIMGCKSLELIGEDK----YKADLQI---G-IA--A--V--KGKYDAIIEVTD   69 (162)
T ss_dssp             EEEEEEE-ESCHHHHHHHHTCHHHHHHHSTTEEEEEEEETTE----EEEEEEE---C-CG--G--G--CEEEEEEEEEEE
T ss_pred             EeeEEEe-cCCHHHHHHHhcCHHHHHhhCCCceEeEEeCCCe----EEEEEEE---E-ee--e--E--EEEEEEEEEEEe
Confidence            3567889 9999999999999999999999987777654321    1112221   0 11  1  0  0123  346677


Q ss_pred             EecCCCeEEEEEee-cccceeeEEEEEEEEEc-CCceEEEEEEEEeeCCC---CCH----HHHHHHHHHHHHHHHHHHHH
Q 030202           96 INAEEMTLTYSIVD-GNVGFYGYVSTLTVAPK-ENGCYIEWKYEVEPVKG---WRL----EDLDCFISSGLQVMARRMKE  166 (181)
Q Consensus        96 ~D~~~~~~~y~v~~-g~~p~~~~~~t~~v~p~-~~gT~v~W~~~~~p~~~---~~~----~~~~~~~~~gl~~l~~~le~  166 (181)
                      +++ ++++.++... +..+.....++++|+|. ++||+|+|+.++++...   ...    ...+.++...+++|++.+|+
T Consensus        70 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gT~v~~~~~~~~~g~l~~~~~~l~~~~~~~~~~~~~~~lk~~~e~  148 (162)
T 2pcs_A           70 IKP-PYHYKLLVNGEGGPGFVNAEGVIDLTPINDECTQLTYTYSAEVGGKVAAIGQRMLGGVAKLLISDFFKKIQKEIAK  148 (162)
T ss_dssp             EET-TTEEEEEEEEEETTEEEEEEEEEEEEESSSSEEEEEEEEEEEEESGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCC-CcEEEEEEEecCCCccEEEEEEEEEEecCCCcEEEEEEEEEEECCCHHHhhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            787 4677776652 22344557889999994 45799999988885321   111    12245677778888888888


Q ss_pred             HHhhhhhhccc
Q 030202          167 ALQAYEVIMHY  177 (181)
Q Consensus       167 ~~~~~~~~~~~  177 (181)
                      ....|+++-|.
T Consensus       149 ~~~~~~~~~~~  159 (162)
T 2pcs_A          149 SKQEASEGHHH  159 (162)
T ss_dssp             C-------CEE
T ss_pred             cCccccccccc
Confidence            77777777663

>3ggn_A Uncharacterized protein DR_A0006; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Deinococcus radiodurans R1} PDB: 2kcz_A

Probab=99.46  E-value=3.6e-12  Score=96.05  Aligned_cols=107  Identities=18%  Similarity=0.226  Sum_probs=76.8

Q ss_pred             EEEEEEeCCCHHHHHHHHhccCCcccccccceeEEEecCCCCCCceEEEEeeeecCCCCCCCCCcCccceEEEEEEEEec
Q 030202           19 RACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLAINA   98 (181)
Q Consensus        19 ~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~G~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~~D~   98 (181)
                      ..+++| +||+++||+++.|+.++|+|+|.+.+++.+++     |..+...-  .+ .   |  .. .....-+++.+++
T Consensus         7 ~~s~~I-~ap~e~V~~~~~D~e~~p~w~p~~~~v~~~~~-----~~~~~~~~--~~-~---G--~~-~~~~~~~v~e~~p   71 (155)
T 3ggn_A            7 RDAVTI-GKPAEQLYAVWRDLPGLPLLMTHLRSVEVLDD-----KRSRWTVE--AP-A---P--LG-TVSWEAELTADEP   71 (155)
T ss_dssp             EEEEEE-SSCHHHHHHHHHCGGGHHHHSTTCCEEEECSS-----SEEEEEEE--CC-T---T--TC-EEEEEEEEEEEET
T ss_pred             EEEEEE-cCCHHHHHHHHhCHHHhHHHhhhceEEEEecC-----CeeEEEEE--ec-C---C--cc-eEEEEEEEEEecC
Confidence            568889 99999999999999999999999998887654     22333221  11 1   2  01 1145677787776


Q ss_pred             CCCeEEEEEeecccceeeEEEEEEEEEc-CC-ceEEEEEEEEeeCCC
Q 030202           99 EEMTLTYSIVDGNVGFYGYVSTLTVAPK-EN-GCYIEWKYEVEPVKG  143 (181)
Q Consensus        99 ~~~~~~y~v~~g~~p~~~~~~t~~v~p~-~~-gT~v~W~~~~~p~~~  143 (181)
                       ++++.|+..+|+.  ..+.++++|.+. ++ ||+|+++++|+|..+
T Consensus        72 -~~~i~~~~~~g~~--~~~~g~~~F~~~~~~~gT~V~~~~~~~~~~~  115 (155)
T 3ggn_A           72 -GKRIAWRSLPGAR--IENSGEVLFRPAPGARGTEVVVRLTYRPPGG  115 (155)
T ss_dssp             -TTEEEEEECTTCS--SCEEEEEEEEECSSSSCEEEEEEEEEC----
T ss_pred             -CCEEEEEECCCCC--cceEEEEEEEECCCCCceEEEEEEEEECCCc
Confidence             6899999988853  346778899998 44 799999999997643

>2ns9_A Hypothetical protein APE2225; uncharacterized conserved protein, structural genomics, PSI, structure initiative; 1.80A {Aeropyrum pernix} SCOP: d.129.3.10

Probab=99.45  E-value=1.2e-11  Score=92.06  Aligned_cols=136  Identities=13%  Similarity=0.154  Sum_probs=86.2

Q ss_pred             EEEEEEeCCCHHHHHHHHhccCCcccccccceeEEEecCCCCCCceEEE-EeeeecCCCCCCCCCcCccceEEEEEEEEe
Q 030202           19 RACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRF-CAGFKTPVDNKDDDHEQSVNWTKQKLLAIN   97 (181)
Q Consensus        19 ~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~G~~~~vGsvR~-~~~~~~~~~g~~G~~~~~~~~~~Erl~~~D   97 (181)
                      ..+++| +||+++||+++.|+.++++|+|.+.+.+ ..|+     ..+. +...    .+  +  ....-..+-++++++
T Consensus        16 ~~~~~i-~ap~e~Vw~~l~D~~~~~~w~p~~~~~~-~~~~-----~~~~~~~~~----~g--~--~~~~~~~~~~~~~~~   80 (157)
T 2ns9_A           16 EGSFEV-SKTPEEVFEFLTDPKRFSRAFPGFKSVE-VEDG-----SFTIELRLS----LG--P--LRGDARVRASFEDLE   80 (157)
T ss_dssp             EEEEEE-SSCHHHHHHHHTCHHHHGGGSTTEEEEE-EETT-----EEEEEEEEE----SS--S--SEEEEEEEEEEEEEE
T ss_pred             eeEEEE-cCCHHHHHHHHcCHHHHHhhCCCceEEE-ECCC-----EEEEEEEEE----Ec--c--eeEEEEEEEEEEecC
Confidence            456788 9999999999999999999999987666 4331     1222 1210    11  1  000002233555777


Q ss_pred             cCCCeEEEEEee-cc-cceeeEEEEEEEEEcCCceEEEEEEEEeeC---CCCCHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 030202           98 AEEMTLTYSIVD-GN-VGFYGYVSTLTVAPKENGCYIEWKYEVEPV---KGWRLEDLDCFISSGLQVMARRMKEALQAY  171 (181)
Q Consensus        98 ~~~~~~~y~v~~-g~-~p~~~~~~t~~v~p~~~gT~v~W~~~~~p~---~~~~~~~~~~~~~~gl~~l~~~le~~~~~~  171 (181)
                      + ++++.|+... +. .++. +..+++|+|.++||+|+|+.+++..   .......+....+..++.+.++|++.+++|
T Consensus        81 ~-~~~i~~~~~~~~~~~~~~-~~~~~~l~~~~~gT~v~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~lk~~~e~~  157 (157)
T 2ns9_A           81 K-PSKATVKGSGRGAGSTLD-FTLRFAVEPSGGGSRVSWVFEGNVGGLAASMGGRVLDSLARRMINDVISGVKRELGEA  157 (157)
T ss_dssp             T-TTEEEEEEEEECSSEEEE-EEEEEEEEEETTEEEEEEEEEEEEEEGGGGSCHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred             C-CcEEEEEEEecCCCccEE-EEEEEEEEeCCCcEEEEEEEEEEECcCHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            6 5688886442 22 2344 6789999999888999999887642   222333345556666677777777766543

>3p9v_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.78A {Marinobacter aquaeolei}

Probab=99.30  E-value=6.9e-11  Score=89.72  Aligned_cols=139  Identities=12%  Similarity=0.124  Sum_probs=89.2

Q ss_pred             eEEEEEEeCCCHHHHHHHHhccCCcccccccceeEEEecCCCCCCceEEEEeeeecCCCCCCCCCcCccceEEEEEEEEe
Q 030202           18 GRACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLAIN   97 (181)
Q Consensus        18 ~~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~G~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~~D   97 (181)
                      -+.+++| +||+++||+++.|+++|+.|.|........ ++    |..|...- ... .|  +  .........++ .++
T Consensus         9 v~~s~~I-~ap~e~v~~lv~Dve~w~~~yp~~~p~~~~-~~----~~~~~~~a-~l~-vg--~--~~~~~~~~s~~-~~~   75 (161)
T 3p9v_A            9 LNRDLEI-PASYDEVFDLLADVPKSASHFPKVDKLVDL-GN----NAYRWEME-KVG-VD--K--HAIQSVYACTY-HAD   75 (161)
T ss_dssp             EEEEEEE-SSCHHHHHHHHTCHHHHHTTSTTEEEEEEE-ET----TEEEEEEC-CBS-SG--G--GCBCCEEEEEE-EEE
T ss_pred             EEEEEEE-cCCHHHHHHHHhChhhhHhhCCCeEEEEEc-CC----CceEEEEE-EEe-ee--e--EEEEEEEEEEE-EEc
Confidence            3567888 999999999999999955555543322222 21    22222210 001 12  1  10001233333 356


Q ss_pred             cCCCeEEEEEeecccceeeEEEEEEEEEcCCc-eEEEEEEEEeeC---CCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 030202           98 AEEMTLTYSIVDGNVGFYGYVSTLTVAPKENG-CYIEWKYEVEPV---KGWRLEDLDCFISSGLQVMARRMKEALQA  170 (181)
Q Consensus        98 ~~~~~~~y~v~~g~~p~~~~~~t~~v~p~~~g-T~v~W~~~~~p~---~~~~~~~~~~~~~~gl~~l~~~le~~~~~  170 (181)
                      ++++++.|+.++|++ .+...++++|+|.++| |+|+|.++|++.   .+.....+..+++..++.|.+.+++++.+
T Consensus        76 ~~~~~I~~~~~~g~~-~~~l~g~w~f~p~~~g~t~V~~~~~~e~~~pl~~ll~~~~~~~~~~~~~~~v~af~~ra~~  151 (161)
T 3p9v_A           76 KEAGKITWSPIKGEG-NGVVSGSWTLSAKGDNATAVKFQTSAELTVPLPSLLKLAISPVIKHEFNSLVDTYMANLKK  151 (161)
T ss_dssp             TTTTEEEEEECTTST-TEEEEEEEEEEESSSSCEEEEEEEEEEEEECSCGGGHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCCEEEEEEecCcc-ceeEEEEEEEEECCCCeEEEEEEEEEEEcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            667899999997754 2667889999999887 999999999864   44434445677888888888888887654

>2leq_A Uncharacterized protein; start domains, structural genomics, PSI-biology, protein STR initiative; NMR {Cytophaga hutchinsonii}

Probab=99.21  E-value=6.7e-10  Score=81.11  Aligned_cols=133  Identities=15%  Similarity=0.121  Sum_probs=85.2

Q ss_pred             eeEEEEEEeCCCHHHHHHHHhccCCcccccccceeEEEecCCCCCCceEEEEeeeecCCCCCCCCCcCccceEEEEEEEE
Q 030202           17 QGRACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLAI   96 (181)
Q Consensus        17 ~~~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~G~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~~   96 (181)
                      .=..+++| +||+++||+++.|+..+++|++.. .+.   ++ -.+|....+..   + .+  |  .  ...+..+++++
T Consensus         6 ~i~~~~~i-~ap~e~Vw~~ltd~~~~~~W~~~~-~~~---~~-~~~G~~~~~~~---~-~~--g--~--~~~~~~~v~~~   69 (146)
T 2leq_A            6 IAQVKTVI-NAPIEKVWEALVNPEIIKEYMFGT-TVV---SD-WKEGSQIVWKG---E-WK--G--K--AYEDKGTILQF   69 (146)
T ss_dssp             EEEEEEEE-CSCHHHHHHHHSCTTHHHHHSSSC-EEE---CC-CSTTCEEEEEE---E-ET--T--E--EEEEEEEEEEE
T ss_pred             eEEEEEEE-CCCHHHHHHHHcCHHHhceeEcCC-cce---ec-cCCCCEEEEEe---c-CC--C--c--eecccEEEEEE
Confidence            34678899 999999999999999999996322 121   11 12443333332   1 12  2  1  11467889999


Q ss_pred             ecCCCeEEEEEeeccc-----ceeeEEEEEEEEEcCCceEEEEEEEEeeCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 030202           97 NAEEMTLTYSIVDGNV-----GFYGYVSTLTVAPKENGCYIEWKYEVEPVKGWRLEDLDCFISSGLQVMARRMKEALQAY  171 (181)
Q Consensus        97 D~~~~~~~y~v~~g~~-----p~~~~~~t~~v~p~~~gT~v~W~~~~~p~~~~~~~~~~~~~~~gl~~l~~~le~~~~~~  171 (181)
                      ++ ++++.|+......     +......+++|+|.++||+|+++.+..+..     .....+..+.+.+...|+++++++
T Consensus        70 ~p-~~~l~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~gT~l~~~~~~~~~~-----~~~~~~~~gw~~~l~~Lk~~le~~  143 (146)
T 2leq_A           70 NE-RSILQYSHFSPLTGKPDLPENYHVVTITLTALKKGVEVELTQDNNETE-----KEQKHSEDNWNTMLEGLKKFLENK  143 (146)
T ss_dssp             ET-TTEEEEECBCGGGCCCSCGGGSCEEEEEEEECSSCEEEEEEEEEESSH-----HHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred             cC-CCEEEEEEccCccCCCCCCCCceEEEEEEEEcCCCeEEEEEEecCCch-----hhHhhHHhhHHHHHHHHHHHHhcc
Confidence            98 6788888653211     122467889999998899999997654421     233445666666666666666543

>1z94_A Conserved hypothetical protein; NESG, CV1439, structural genomics, PSI structure initiative; 2.10A {Chromobacterium violaceum} SCOP: d.129.3.5

Probab=99.20  E-value=8e-10  Score=81.01  Aligned_cols=135  Identities=17%  Similarity=0.208  Sum_probs=83.5

Q ss_pred             EEEEEEeCCCHHHHHHHHhccCCcccccccc-eeEEEecCCCCCCceEEEEeeeecCCCCCCCCCcCccceEEEEEEEEe
Q 030202           19 RACEELTGVKAEQIWAFLEDFFGLDKWFPTL-TTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLAIN   97 (181)
Q Consensus        19 ~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v-~~~~~~~G~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~~D   97 (181)
                      .++++| +||+++||+++.|...+++|++.- ..+...+.+ -.+|....+.....+ +   |  .  ...+.-++++++
T Consensus         6 ~~~~~i-~ap~e~Vw~altd~~~~~~W~~~~~~~~~~~~~~-~~~Gg~~~~~~~~~~-~---g--~--~~~~~~~v~~~~   75 (147)
T 1z94_A            6 RLHRVL-SAPPERVYRAFLDPLALAKWLPPEGFVCKVLEHD-ARVGGAYKMEFLAFA-S---G--Q--KHAFGGRYLELV   75 (147)
T ss_dssp             EEEEEE-SSCHHHHHHHTTCHHHHHHHSSCTTEEEEEEEEC-CSTTCEEEEEEEETT-T---C--C--EEEEEEEEEEEE
T ss_pred             EEEEEe-CCCHHHHHHHhCCHHHHhhccCCCCEeeeEEEEc-cCCCcEEEEEEEECC-C---C--C--EEEEEEEEEEEc
Confidence            567889 999999999999999999999732 122222221 234543333221011 1   2  1  125678899999


Q ss_pred             cCCCeEEEEEeecccce-eeEEEEEEEEEcCCceEEEEEEEEeeCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 030202           98 AEEMTLTYSIVDGNVGF-YGYVSTLTVAPKENGCYIEWKYEVEPVKGWRLEDLDCFISSGLQVMARRMKEALQ  169 (181)
Q Consensus        98 ~~~~~~~y~v~~g~~p~-~~~~~t~~v~p~~~gT~v~W~~~~~p~~~~~~~~~~~~~~~gl~~l~~~le~~~~  169 (181)
                      + ++++.|+...+..+. .....+++|+|.++||+|+++..+.|.. ...+.    ...|.+.+..+|++++.
T Consensus        76 p-~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~gT~l~~~~~~~~~~-~~~~~----~~~gw~~~L~~L~~~le  142 (147)
T 1z94_A           76 P-GERIRYTDRFDDAGLPGDMITTITLAPLSCGADLSIVQEGIPDA-IPPEN----CYLGWQQSLKQLAALVE  142 (147)
T ss_dssp             T-TTEEEEEEEESCCC---CEEEEEEEEEETTEEEEEEEEECCCTT-SCHHH----HHHHHHHHHHHHHHHHS
T ss_pred             C-CCEEEEEEEEeCCCCCCcEEEEEEEEecCCCEEEEEEEEcCCch-hhHHH----HHHHHHHHHHHHHHHHH
Confidence            8 678999876542211 1457889999998899999998876532 22333    34444455555555543

>2qpv_A Uncharacterized protein ATU1531; structural genomics, PSI protein structure initiative, midwest center for structural genomics; 2.35A {Agrobacterium tumefaciens str} SCOP: d.129.3.8

Probab=99.13  E-value=1.4e-09  Score=82.67  Aligned_cols=121  Identities=12%  Similarity=0.141  Sum_probs=76.9

Q ss_pred             eeEEEEEEeCCCHHHHHHHHhccCCcccccccceeEEEecCCCCCCceEEEEeeeecCCCCCCCCCcCccceEEEEEEEE
Q 030202           17 QGRACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLAI   96 (181)
Q Consensus        17 ~~~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~G~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~~   96 (181)
                      ..+.+++| ++|+++||++++|+.++|+|.|++.++ +...+     +-+....  .| -   |       .++   +.+
T Consensus        28 ~~~~si~I-~ap~eeVy~~~~D~e~lP~W~~~l~~~-~~~~~-----~~w~a~~--~p-~---G-------~v~---v~~   84 (156)
T 2qpv_A           28 SRIIHLSV-EKPWAEVYDFAANPGNMPRWAAGLAGG-LEADG-----EDWIAKG--GP-L---G-------EVR---VNF   84 (156)
T ss_dssp             EEEEEEEE-SSCHHHHHHHHHCGGGGGGTCGGGTTC-CEEET-----TEEEEEC--SS-S---C-------EEE---EEE
T ss_pred             ceEEEEEE-cCCHHHHHHHHHChhhHHHHHHhhhhh-cccCC-----CcEEEec--cC-C---C-------cEE---EEE
Confidence            34789999 999999999999999999999999875 22211     1222220  12 1   2       222   333


Q ss_pred             ecCC-C--eEEEEEeecccceeeEEEEEEEEEcCCceEEEEEEEEeeCCCCCHHHHHH---HHHHHHHHHHHHHH
Q 030202           97 NAEE-M--TLTYSIVDGNVGFYGYVSTLTVAPKENGCYIEWKYEVEPVKGWRLEDLDC---FISSGLQVMARRMK  165 (181)
Q Consensus        97 D~~~-~--~~~y~v~~g~~p~~~~~~t~~v~p~~~gT~v~W~~~~~p~~~~~~~~~~~---~~~~gl~~l~~~le  165 (181)
                      ++.+ .  ...|....+..  . ..+.++|.|.++||+|+|++. .+. +.....|+.   .++..|++|++.||
T Consensus        85 ~~~~~~gv~d~~~~l~~g~--~-~~~~~rv~p~g~GTeV~~tl~-~~p-g~~~~~~~~~~~~v~~dL~~LK~l~E  154 (156)
T 2qpv_A           85 APHNEFGVIDHVVTLPDGL--K-VYNALRVTPNGSGTEVSFTLL-RLE-GMTDEDFEQDASAITADLEMLKSLLE  154 (156)
T ss_dssp             CCCCSSCBCCEEEECTTSC--E-EEEEEEEEEETTEEEEEEEEE-CCT-TCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ecCCCceEEEEEEecCCCc--E-EEEEEEEEeCCCCEEEEEEEe-cCC-CCChhhhhhhHHHHHHHHHHHHHHHh
Confidence            3322 1  22444433211  1 234689999988999999984 443 345666643   67888888888777

>3q64_A MLL3774 protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.50A {Mesorhizobium loti}

Probab=99.12  E-value=7.2e-09  Score=78.31  Aligned_cols=136  Identities=10%  Similarity=0.020  Sum_probs=82.8

Q ss_pred             EEEEEEeCCCHHHHHHHHhccCCcccccccce--eEEEecCCCCCCc-eEEEEeeeecCCCCCCCCCcCccceEEEEEEE
Q 030202           19 RACEELTGVKAEQIWAFLEDFFGLDKWFPTLT--TCIPIQGISGQPG-CVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLA   95 (181)
Q Consensus        19 ~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~--~~~~~~G~~~~vG-svR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~   95 (181)
                      .++++| +||+++||+++.|...+.+|++...  .+...+.+ -.+| ..+....  .| +   |  .  ...+.-++++
T Consensus        12 ~~~r~i-~Ap~e~Vw~altdp~~~~~W~~~~~g~~~~~~~~d-~~~Gg~~~~~~~--~~-~---G--~--~~~~~g~v~e   79 (162)
T 3q64_A           12 IIERLY-PAPPSKVFFALGNADAKRRWFTDPDNPMPGRFEMD-FRVGGKEVNAGG--PK-D---G--P--IHVYTATYQD   79 (162)
T ss_dssp             EEEEEE-SSCHHHHHHHHHCHHHHHHHSSCTTSCCGGGCEEC-CSTTCEEEEEEC--CT-T---S--C--CEEEEEEEEE
T ss_pred             EEEEEe-CCCHHHHHHHHCCHHHHhhcCCCCCCccceEEEEC-CccCCEEEEEEE--CC-C---C--C--EEEEEEEEEE
Confidence            467788 9999999999999999999995321  11111111 1234 4444321  11 2   3  1  1257888999


Q ss_pred             EecCCCeEEEEEee--cccceeeEEEEEEEEEcCCceEEEEEEEEeeCC-CCCHHHHHHHHHHHHHHHHHHHHHH
Q 030202           96 INAEEMTLTYSIVD--GNVGFYGYVSTLTVAPKENGCYIEWKYEVEPVK-GWRLEDLDCFISSGLQVMARRMKEA  167 (181)
Q Consensus        96 ~D~~~~~~~y~v~~--g~~p~~~~~~t~~v~p~~~gT~v~W~~~~~p~~-~~~~~~~~~~~~~gl~~l~~~le~~  167 (181)
                      +++ ++++.|+...  ...|......+++|+|.++||+|+++...-+.. ....+....-....|+.|++.|+..
T Consensus        80 ~~p-~~rl~~~~~~~~~~~~~~~s~v~~~l~~~~~gT~lt~~~~~~~~~~~~~~~~~~~GW~~~L~~L~~~le~~  153 (162)
T 3q64_A           80 IVP-DQRIVYSYDMLFGETRISVSLATIQLFAEGEGTRLVLTEQGAFLDGHDTPSTREHGTGVLLDLLDAFLDKT  153 (162)
T ss_dssp             EET-TTEEEEEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEEEEEETTSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EcC-CCEEEEEEEecCCCCCCCceEEEEEEEEcCCCEEEEEEEEecCccchhHHHHHHHHHHHHHHHHHHHHhhc
Confidence            998 6788777652  122344567899999999899999998764322 1233333333444455555555444

>2lcg_A Uncharacterized protein; start domain, structural genomics, northeast structural GENO consortium, NESG, unknown function, AHSA1; NMR {Ralstonia metallidurans}

Probab=99.12  E-value=2.6e-09  Score=78.74  Aligned_cols=129  Identities=9%  Similarity=0.076  Sum_probs=82.1

Q ss_pred             EEEEEEeCCCHHHHHHHHhccCCcccc-ccc-ceeEEEecCCCCCCceEEEEeeeecCCCCCCCCCcCccceEEEEEEEE
Q 030202           19 RACEELTGVKAEQIWAFLEDFFGLDKW-FPT-LTTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLAI   96 (181)
Q Consensus        19 ~v~~~I~~Ap~e~VW~~l~Df~~~~~w-~P~-v~~~~~~~G~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~~   96 (181)
                      .++++| +||+++||+++.|...+++| ++. -..+...+++ -.+|....+... .+ +   |   .....+.-+++++
T Consensus         4 ~~~~~i-~ap~e~Vw~altd~~~~~~W~~~~~~~~~~~~~~d-~~~Gg~~~~~~~-~~-~---g---~~~~~~~~~v~~~   73 (142)
T 2lcg_A            4 TVETTV-AAPVGKVWRAYTTPEDIKQWNAASDDWHTTAATVD-LREGGAFSSRME-AK-D---G---SMGFDFAGTYTKV   73 (142)
T ss_dssp             EEEEEE-SSCHHHHHHHTTCHHHHHHHCCSSTTEEEEEEEEC-CSTTCEEEEEEE-ET-T---S---SCEEEEEEEEEEE
T ss_pred             EEEEEe-CCCHHHHHHHhCCHHHHhcCCCCCCCccceeeEEc-cccCCEEEEEEE-cC-C---C---CceeeeEEEEEEE
Confidence            467889 99999999999999999999 652 1222222222 234543333321 11 2   2   1011477889999


Q ss_pred             ecCCCeEEEEEeecccceeeEEEEEEEEEcCCceEEEEEEEEeeCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 030202           97 NAEEMTLTYSIVDGNVGFYGYVSTLTVAPKENGCYIEWKYEVEPVKGWRLEDLDCFISSGLQVMARRMKEALQAY  171 (181)
Q Consensus        97 D~~~~~~~y~v~~g~~p~~~~~~t~~v~p~~~gT~v~W~~~~~p~~~~~~~~~~~~~~~gl~~l~~~le~~~~~~  171 (181)
                      ++ ++++.|+.. +      ...+++|+|.++||+|+++.+..+  ....+.    ...|.+.+..+|++++..+
T Consensus        74 ~p-~~~l~~~~~-g------~~~~~~l~~~~~gT~l~~~~~~~~--~~~~~~----~~~Gw~~~L~~L~~~le~~  134 (142)
T 2lcg_A           74 VE-NKRIEYAFG-D------RTAKVEFLEAPQGVTVRVSFVAET--EYPVEQ----QQQGWQAILNNFKRHVESH  134 (142)
T ss_dssp             ET-TTEEEEEET-T------EEEEEEEEEETTEEEEEEEEECCS--SSCHHH----HHHHHHHHHHHHHHHHHHS
T ss_pred             cC-CCEEEEEcC-C------CEEEEEEEEcCCCEEEEEEEecCC--HHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence            98 679999862 2      577899999988999999977632  223333    3555555556666666554

>1xuv_A Hypothetical protein MM0500; alpha-beta protein, northeast structural genomics consortium, NESG, structural genomics; 2.10A {Methanosarcina mazei GO1} SCOP: d.129.3.5

Probab=99.12  E-value=4.8e-09  Score=80.40  Aligned_cols=146  Identities=9%  Similarity=0.011  Sum_probs=89.6

Q ss_pred             eeeEEEEEEeCCCHHHHHHHHhccCCccccccc-ceeEEEecCCCCCCc-eEEEEeeeecCCCCCCCCCcCccceEEEEE
Q 030202           16 WQGRACEELTGVKAEQIWAFLEDFFGLDKWFPT-LTTCIPIQGISGQPG-CVRFCAGFKTPVDNKDDDHEQSVNWTKQKL   93 (181)
Q Consensus        16 w~~~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~-v~~~~~~~G~~~~vG-svR~~~~~~~~~~g~~G~~~~~~~~~~Erl   93 (181)
                      -.=.++++| +||+++||+++.|...+.+|++. -..+...+.+ -.+| ..+....  .| +   |   . ...+.-++
T Consensus        22 ~~i~~~r~i-~Ap~e~Vw~altdpe~~~~W~~~~~~~~~~~~~d-~~~Gg~~~~~~~--~~-~---G---~-~~~~~~~v   89 (178)
T 1xuv_A           22 QEIIITREF-DAPRELVFKAFTDPDLYTQWIGPRGFTTALKIFE-PKNGGSWQYIQK--DP-E---G---N-EYAFHGVN   89 (178)
T ss_dssp             SEEEEEEEE-SSCHHHHHHHHHCHHHHTTTCSSTTCEEEEEEEC-CSTTCEEEEEEE--CT-T---S---C-EEEEEEEE
T ss_pred             cEEEEEEEE-CCCHHHHHHHhCCHHHHHhCCCCCCccceEEEEe-cccCCEEEEEEE--CC-C---C---C-EEEEEEEE
Confidence            345678889 99999999999999999999752 1122222221 1244 3333321  12 2   3   1 12467889


Q ss_pred             EEEecCCCeEEEEEeecccc--eeeEEEEEEEEEcC-CceEEEEEEEEeeCCCCCHHHHH-HHHHHHHHHHHHHHHHHHh
Q 030202           94 LAINAEEMTLTYSIVDGNVG--FYGYVSTLTVAPKE-NGCYIEWKYEVEPVKGWRLEDLD-CFISSGLQVMARRMKEALQ  169 (181)
Q Consensus        94 ~~~D~~~~~~~y~v~~g~~p--~~~~~~t~~v~p~~-~gT~v~W~~~~~p~~~~~~~~~~-~~~~~gl~~l~~~le~~~~  169 (181)
                      +++++ +++|.|+......|  -.....+++|+|.+ ++|+|+++..+.+..  ..+.+. ..+..|.+.+..+|++++.
T Consensus        90 ~e~~p-~~rl~~~~~~~~~~~~~~~~~v~~~l~~~~~ggT~lt~~~~~~~~~--~~~~~~~~~~~~Gw~~~L~~Lk~~le  166 (178)
T 1xuv_A           90 HDVTE-PERIISTFEFEGLPEKGHVILDTARFEALPGDRTKLTSHSVFQTIE--DRDGMLQSGMEEGINDSYERLDELLE  166 (178)
T ss_dssp             EEEET-TTEEEEEEEETTSSSSCCCEEEEEEEEEETTTEEEEEEEEECSSHH--HHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred             EEEeC-CCEEEEEEEecCCCCCCCcEEEEEEEEEcCCCCEEEEEEEEeCCHH--HHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            99998 67888887643222  12467899999998 589999998864310  111111 1134666666677777766


Q ss_pred             hhhhhcc
Q 030202          170 AYEVIMH  176 (181)
Q Consensus       170 ~~~~~~~  176 (181)
                      ...+.-|
T Consensus       167 ~~~~~~~  173 (178)
T 1xuv_A          167 KMKKLEH  173 (178)
T ss_dssp             HHHHHHC
T ss_pred             hcccchh
Confidence            6554433

>2lak_A AHSA1-like protein RHE_CH02687; NESG, structural genomics, northeast structural genomics CON PSI-biology, structure genomics, unknown function; NMR {Rhizobium etli}

Probab=99.10  E-value=5.4e-10  Score=84.06  Aligned_cols=128  Identities=15%  Similarity=0.152  Sum_probs=83.2

Q ss_pred             eeEEEEEEeCCCHHHHHHHHhccCCcccccccceeEEEecCCCCCCc-eEEEEeeeecCCCCCCCCCcCccceEEEEEEE
Q 030202           17 QGRACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPG-CVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLA   95 (181)
Q Consensus        17 ~~~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~G~~~~vG-svR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~   95 (181)
                      .=..+++| +||+++||+++.|...+++|++.......      .+| ..+ +..     .|  +   .   .+..++++
T Consensus        10 ~i~~~~~i-~Ap~e~Vw~altdp~~~~~W~~~~~~~~~------~~Gg~~~-~~~-----~g--~---~---~~~~~v~e   68 (160)
T 2lak_A           10 VVRREAHL-AAPPAAVFALMTDPEKILRWMGTEAEVEP------EPGGLYL-VNV-----TG--A---R---FARGSFRE   68 (160)
T ss_dssp             EEEEEEEE-SSCHHHHHHHHHCHHHHHHTSCSSEEESC------STTCCEE-ECS-----ST--T---C---CSSCCEEE
T ss_pred             eEEEEEEe-CCCHHHHHHHhcChHHHhhhCCCcceeec------cCCCEEE-EEE-----eC--C---c---eEEEEEEE
Confidence            45678889 99999999999999999999986433222      123 333 322     12  1   0   24456888


Q ss_pred             EecCCCeEEEEEeecc---cceeeEEEEEEEEEcCCceEEEEEEEEeeCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 030202           96 INAEEMTLTYSIVDGN---VGFYGYVSTLTVAPKENGCYIEWKYEVEPVKGWRLEDLDCFISSGLQVMARRMKEALQAY  171 (181)
Q Consensus        96 ~D~~~~~~~y~v~~g~---~p~~~~~~t~~v~p~~~gT~v~W~~~~~p~~~~~~~~~~~~~~~gl~~l~~~le~~~~~~  171 (181)
                      +++ ++++.|+...+.   .+-.....+++|+|.++||+|+|+..--+.    .+ ....+..|.+.+..+|++++.++
T Consensus        69 ~~p-~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~gT~l~~~~~~~~~----~~-~~~~~~~gw~~~L~~Lk~~le~~  141 (160)
T 2lak_A           69 VVP-VHRLAYSFGWDGSEVVPPGSSLVEIDLIEQGGGTLLRLTHSGLPS----AE-QCAGHEEGWAHYLGRLTEVAAGR  141 (160)
T ss_dssp             EET-TTEEEECCCCCSSSCCCTTSCEEEEEEEECSSSEEEEEEEECCCS----HH-HHHHHHHHHHHHHHHHHHHHHCS
T ss_pred             EcC-CCEEEEEEEecCCCCCCCCcEEEEEEEEECCCCEEEEEEEeCCCC----HH-HHHHHHHHHHHHHHHHHHHHhcC
Confidence            987 678888765432   122346789999999889999998762221    11 22334556666666666666554

>1xn6_A Hypothetical protein BC4709; structural genomics, protein structure initiative, PSI, NESG target protein BCR68, alpha + beta; NMR {Bacillus cereus} SCOP: d.129.3.5

Probab=99.07  E-value=1.9e-09  Score=79.42  Aligned_cols=125  Identities=13%  Similarity=0.132  Sum_probs=83.8

Q ss_pred             eeEEEEEEeCCCHHHHHHHHhccCCcccccccceeEEEecCCCCCCceEEEEeeeecCCCCCCCCCcCccceEEEEEEEE
Q 030202           17 QGRACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLAI   96 (181)
Q Consensus        17 ~~~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~G~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~~   96 (181)
                      .=..+++| +||+++||+++.|...+++|+|.+   .   + ...+|....+..   | .   |       .+.-+++++
T Consensus         9 ~i~~~~~i-~ap~e~Vw~~ltd~~~~~~W~~~~---~---~-~~~~G~~~~~~~---~-~---g-------~~~~~v~e~   66 (143)
T 1xn6_A            9 DIKQTIVF-NASIQKVWSVVSTAEGIASWFMPN---D---F-VLEVGHEFHVQS---P-F---G-------PSPCKVLEI   66 (143)
T ss_dssp             CEEEEEEE-SSCHHHHHHTTSCSHHHHTTSCCB---C---C-CCCTTCEECBCC---T-T---C-------CCCEEEEEE
T ss_pred             EEEEEEEE-cCCHHHHHHHHhCHhHHHHhcCCC---C---c-CcCCCCEEEEEE---c-C---C-------CceEEEEEE
Confidence            34678889 999999999999999999999862   1   2 123455433332   2 2   3       246789999


Q ss_pred             ecCCCeEEEEEeecccceeeEEEEEEEEEcCC-ceEEEEEEEEeeCC--C-----CCHHHHHHHHHHHHHHHH-HHHHHH
Q 030202           97 NAEEMTLTYSIVDGNVGFYGYVSTLTVAPKEN-GCYIEWKYEVEPVK--G-----WRLEDLDCFISSGLQVMA-RRMKEA  167 (181)
Q Consensus        97 D~~~~~~~y~v~~g~~p~~~~~~t~~v~p~~~-gT~v~W~~~~~p~~--~-----~~~~~~~~~~~~gl~~l~-~~le~~  167 (181)
                      ++ +++++|+...+     ....+++|+|.++ +|+|+++...-+..  +     .........+..|.+.+. ..|+++
T Consensus        67 ~p-~~~l~~~~~~~-----~~~~~~~l~~~~~g~T~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gw~~~l~~~L~~~  140 (143)
T 1xn6_A           67 DE-PNHLSFSWDTD-----GWVVSFDLKDLGDNKTEFTLIHGGWKHPDEILPKANAKSSIIRDRMSGGWVAIVNEKLKKV  140 (143)
T ss_dssp             ET-TTEEEEEETTT-----TEEEEEEEEEEETTEEEEEEEEECCCSTTCBCTTTCSBHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred             eC-CCEEEEEEeCC-----CEEEEEEEEECCCCcEEEEEEEEccCccccccccccchhhHHHHHHHHhHHHHHHHHHHHH
Confidence            98 67899986543     3567899999988 79999987744321  1     112233344566666666 666665


Q ss_pred             Hh
Q 030202          168 LQ  169 (181)
Q Consensus       168 ~~  169 (181)
                      ++
T Consensus       141 le  142 (143)
T 1xn6_A          141 VE  142 (143)
T ss_dssp             HH
T ss_pred             hc
Confidence            53

>3rd6_A MLL3558 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, unknown function; 2.80A {Mesorhizobium loti}

Probab=99.06  E-value=1.1e-08  Score=77.26  Aligned_cols=135  Identities=9%  Similarity=0.027  Sum_probs=80.2

Q ss_pred             EEEEEEeCCCHHHHHHHHhccCCcccccccc--eeEEEecCCCCCCc-eEEEEeeeecCCCCCCCCCcCccceEEEEEEE
Q 030202           19 RACEELTGVKAEQIWAFLEDFFGLDKWFPTL--TTCIPIQGISGQPG-CVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLA   95 (181)
Q Consensus        19 ~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v--~~~~~~~G~~~~vG-svR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~   95 (181)
                      .++++| +||+++||+++.|...+.+|++..  ..+...+.+ -.+| ..+....  .| +   |  . . ..+.-++++
T Consensus        11 ~~~r~i-~Ap~e~Vw~altdp~~~~~W~~~~~~~~~~~~~~d-~~~Gg~~~~~~~--~~-~---G--~-~-~~~~g~v~e   78 (161)
T 3rd6_A           11 TIERTY-PQSPDRVFHAFADKATVRRWRVDGDGFTVAEFSFD-FRVGGGEVSRFS--YG-G---G--P-E-VRLDAQFQD   78 (161)
T ss_dssp             EEEEEE-SSCHHHHHHHHHCHHHHHHHTCCCCC---CEEEEC-CSTTCEEEEEEC--ST-T---S--C-C-EEEEEEEEE
T ss_pred             EEEEEE-CCCHHHHHHHhcCHHHHhhccCCCCCceeeEEEEc-cCcCCEEEEEEE--CC-C---C--C-E-EEEEEEEEE
Confidence            457788 999999999999999999999532  111111221 2344 3443321  12 2   3  1 1 157788999


Q ss_pred             EecCCCeEEEEEee--cccceeeEEEEEEEEEcCCceEEEEEEEEeeCC-CCCHHHHHHHHHHHHHHHHHHHHH
Q 030202           96 INAEEMTLTYSIVD--GNVGFYGYVSTLTVAPKENGCYIEWKYEVEPVK-GWRLEDLDCFISSGLQVMARRMKE  166 (181)
Q Consensus        96 ~D~~~~~~~y~v~~--g~~p~~~~~~t~~v~p~~~gT~v~W~~~~~p~~-~~~~~~~~~~~~~gl~~l~~~le~  166 (181)
                      +++ ++++.|+...  ...|......+++|+|.++||+|+++...-+.. ....+....-....|+.|++.|+.
T Consensus        79 ~~p-~~rl~~~~~~~~~~~~~~~s~v~~~l~~~~~gT~lt~~~~~~~~~~~~~~~~~~~GW~~~L~~L~~~le~  151 (161)
T 3rd6_A           79 IVP-DQRIVFSYRMAIGPQPMSASLTTVELTPSGDGTRLTYTEQGAFFDGVDSAKGREEGTRGLLEALAAELQK  151 (161)
T ss_dssp             EET-TTEEEEEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEEEEEETTCCCHHHHHHHHHHHHHHHHHHC--
T ss_pred             EcC-CCEEEEEEEecCCCCCCCceEEEEEEEECCCCEEEEEEEEecCcchhhhHHHHHHHHHHHHHHHHHHHhh
Confidence            998 5778777652  122344567899999998899999998764322 123333333344444444444443

>2il5_A Hypothetical protein; structural genomics, APC23650, PSI-2, structure initiative; 2.30A {Staphylococcus aureus subsp} SCOP: d.129.3.5

Probab=99.05  E-value=1.1e-08  Score=77.40  Aligned_cols=143  Identities=13%  Similarity=0.093  Sum_probs=88.3

Q ss_pred             eeEEEEEEeCCCHHHHHHHHhccCCccccccc-ceeEEEecCCCCCCceEEEEeeeecCCCCCCCCCcCccceEEEEEEE
Q 030202           17 QGRACEELTGVKAEQIWAFLEDFFGLDKWFPT-LTTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLA   95 (181)
Q Consensus        17 ~~~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~-v~~~~~~~G~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~   95 (181)
                      .=.++++| +||+++||+++.|...+.+|++. -..+...+++ -.+|..-.+... .| +   |   . .....-++++
T Consensus        15 ~i~~~~~i-~ap~e~Vw~altdp~~~~~W~~p~~~~~~~~~~d-~~~Gg~~~~~~~-~~-~---G---~-~~~~~~~v~e   83 (171)
T 2il5_A           15 EVEIEKLY-KFSPELVYEAWTKKDLLKQWFMTSARTNKEIEAD-VKEGGKYRIVDQ-QR-N---G---K-VNVIEGIYES   83 (171)
T ss_dssp             EEEEEEEE-SSCHHHHHHHTTCHHHHTTTSSSCTTTEEEEEEC-CSTTCEEEEEEE-CG-G---G---C-EEEEEEEEEE
T ss_pred             eEEEEEEe-CCCHHHHHHHHCCHHHHHhccCCCCccceEEEec-ccCCCEEEEEEE-CC-C---C---C-EEEEEEEEEE
Confidence            44668889 99999999999999999999852 1122222222 124433222221 11 2   3   1 1146788999


Q ss_pred             EecCCCeEEEEEeecccceeeEEEEEEEEEcCC-ceEEEEEEEEeeCCC--CCH-------HHHHHHHHHHHHHHHHHHH
Q 030202           96 INAEEMTLTYSIVDGNVGFYGYVSTLTVAPKEN-GCYIEWKYEVEPVKG--WRL-------EDLDCFISSGLQVMARRMK  165 (181)
Q Consensus        96 ~D~~~~~~~y~v~~g~~p~~~~~~t~~v~p~~~-gT~v~W~~~~~p~~~--~~~-------~~~~~~~~~gl~~l~~~le  165 (181)
                      +++ ++++.|+......|-.....+++|+|.++ +|+|+++....+..+  ...       .........|.+.+..+|+
T Consensus        84 ~~p-~~rl~~~~~~~~~~~~~~~~~~~l~~~~~g~T~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gw~~~L~~L~  162 (171)
T 2il5_A           84 LVM-DEYVKMTIGMPGLSETQDVIEVEFFERETGGTQMLFYYRSLVEKERRFTNLEYKQKKKEYHDAMVHGFELMFDKMY  162 (171)
T ss_dssp             EET-TTEEEEEESCC--CCCCEEEEEEEEECSSSSEEEEEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EcC-CCEEEEEEEecCCCCCcEEEEEEEEECCCCCEEEEEEEEeccCcccccccchhccchhHHHHHHHHHHHHHHHHHH
Confidence            997 67999987654333234678999999988 899999986444311  111       2233445666777777777


Q ss_pred             HHHhhh
Q 030202          166 EALQAY  171 (181)
Q Consensus       166 ~~~~~~  171 (181)
                      +++.++
T Consensus       163 ~~le~~  168 (171)
T 2il5_A          163 HVIETS  168 (171)
T ss_dssp             HHHHTT
T ss_pred             HHHhhc
Confidence            776543

>3q6a_A Uncharacterized protein; structural genomics, PSI-biology; 1.80A {Staphylococcus saprophyticus subsp}

Probab=99.04  E-value=9.3e-09  Score=75.09  Aligned_cols=123  Identities=9%  Similarity=-0.017  Sum_probs=81.5

Q ss_pred             EEEEEEeCCCHHHHHHHHhccCCcccccccceeEEEecCCCCCCceEEEEeeeecCCCCCCCCCcCccceEEEEEEEEec
Q 030202           19 RACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLAINA   98 (181)
Q Consensus        19 ~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~G~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~~D~   98 (181)
                      ..+++| +||+++||+++.|...+++|++.  .+   +++ -.+|..-.+...  . .+         ....-++++++|
T Consensus         4 ~~~~~i-~ap~e~Vw~altd~~~~~~W~~~--~~---~~~-~~~Gg~~~~~~~--~-~~---------~~~~~~v~~~~p   64 (135)
T 3q6a_A            4 ITKMQV-DVPRETVFEAFVDPEKIGGFWFS--SS---SER-WEQGKTITLRYE--E-YD---------AELNINIERVED   64 (135)
T ss_dssp             EEEEEE-SSCHHHHHHHHHCTTTGGGTSSS--EE---SSC-CCTTCEEEEECG--G-GT---------C-CEEEEEEEET
T ss_pred             EEEEEe-CCCHHHHHHHHcCHHHhcccCCC--CC---ccc-ccCCCEEEEEEc--C-cC---------ceEEEEEEEEcC
Confidence            468889 99999999999999999999863  22   222 234543333321  0 01         034557888988


Q ss_pred             CCCeEEEEEeecccceeeEEEEEEEEEcCCceEEEEEEEEeeCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 030202           99 EEMTLTYSIVDGNVGFYGYVSTLTVAPKENGCYIEWKYEVEPVKGWRLEDLDCFISSGLQVMARRMKEALQAY  171 (181)
Q Consensus        99 ~~~~~~y~v~~g~~p~~~~~~t~~v~p~~~gT~v~W~~~~~p~~~~~~~~~~~~~~~gl~~l~~~le~~~~~~  171 (181)
                       ++++.|+...      + ..+++|+|.++||+|+++...-+..  ..+. ......|.+.+...|+++++.+
T Consensus        65 -~~~l~~~~~~------g-~~~~~l~~~~~gT~l~~~~~~~~~~--~~~~-~~~~~~GW~~~l~~L~~~le~g  126 (135)
T 3q6a_A           65 -NQLIAFTWGA------H-PITIQFEESEAGTVVTTTEKDFDTQ--DVKQ-LLGQKEGWVYMLSCLKVYLEHG  126 (135)
T ss_dssp             -TTEEEEEETT------E-EEEEEEEEETTEEEEEEEECCCCSS--CHHH-HHHHHHHHHHHHHHHHHHHHHS
T ss_pred             -CCEEEEEEcC------C-eEEEEEEECCCCEEEEEEEcCCCcc--hHHH-HhhchhCHHHHHHHHHHHHhcC
Confidence             6789888653      1 7789999988889999886643322  2222 2346667777777777777654

>3q63_A MLL2253 protein; structural genomics, PSI-biology, protein structure initiati alpha-beta protein, unknown, structure genomics; 2.00A {Mesorhizobium loti}

Probab=99.03  E-value=1.2e-08  Score=76.26  Aligned_cols=133  Identities=14%  Similarity=0.106  Sum_probs=85.8

Q ss_pred             EEEEEEeCCCHHHHHHHHhccCCcccccccceeEEEecCCCCCCceEEEEeeeecCCCCCCCCCcCccceEEEEEEEEec
Q 030202           19 RACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLAINA   98 (181)
Q Consensus        19 ~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~G~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~~D~   98 (181)
                      .++++| +||+++||+++.|...+.+|++.   +.   . .-.+|..-.+..   + .|  +       .+.-++++++|
T Consensus        12 ~~~~~i-~Ap~e~Vw~altdp~~~~~W~~~---~~---~-~~~~Gg~~~~~~---~-~g--~-------~~~g~v~e~~p   70 (151)
T 3q63_A           12 VVERQI-SHPPEKLWRALTQPHLIEEWLMK---ND---F-KPAVGHRFNISA---D-WG--G-------VLDCEVLAVEP   70 (151)
T ss_dssp             EEEEEE-SSCHHHHHHHHHCHHHHHHHSCE---EC---C-CSSTTCEEEEEC---T-TS--C-------EEEEEEEEEET
T ss_pred             EEEEEe-CCCHHHHHHHHcCHHHHHhhcCc---CC---C-ccCCCCEEEEEC---C-CC--C-------EEEEEEEEEeC
Confidence            567889 99999999999999999999983   21   1 123453333322   1 22  2       57788999998


Q ss_pred             CCCeEEEEEeecc---cceeeEEEEEEEEEcCCceEEEEEEEEeeCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q 030202           99 EEMTLTYSIVDGN---VGFYGYVSTLTVAPKENGCYIEWKYEVEPVKGWRLEDLDCFISSGLQVMARRMKEALQAYEVIM  175 (181)
Q Consensus        99 ~~~~~~y~v~~g~---~p~~~~~~t~~v~p~~~gT~v~W~~~~~p~~~~~~~~~~~~~~~gl~~l~~~le~~~~~~~~~~  175 (181)
                       ++++.|+.....   .+-.....+++|+|.++||+|+++...-+..  ..+. ......|...+...|++++..+|---
T Consensus        71 -~~~l~~~~~~~~~~~~~~~~s~v~~~l~~~~~gT~l~l~~~g~~~~--~~~~-~~~~~~GW~~~L~~L~~~le~~~~~~  146 (151)
T 3q63_A           71 -NKTLSYTWNLAHQDPAFDLRSVVTFTLTPTPTGTHLRMEQSGFRPD--QRRA-YGGAKMGWPQFFEKLEQLLDRTDLEH  146 (151)
T ss_dssp             -TTEEEEECBBCCSSTTTCBCCEEEEEEEECSSSEEEEEEEECCCTT--CHHH-HHHHHHHHHHHHHHHHHHHC------
T ss_pred             -CCEEEEEEecCCCCCCCCCCeEEEEEEEEcCCCEEEEEEEeCCCcc--hHHH-HHhhhhCHHHHHHHHHHHHhccCccc
Confidence             678888866431   1122346789999998899999987643321  2222 23457777888888888888887544


Q ss_pred             c
Q 030202          176 H  176 (181)
Q Consensus       176 ~  176 (181)
                      |
T Consensus       147 ~  147 (151)
T 3q63_A          147 H  147 (151)
T ss_dssp             -
T ss_pred             c
Confidence            3

>2lgh_A Uncharacterized protein; AHSA1, start domain, COG3832, PF08327, HSP90, heat shock, ST genomics, PSI-biology; NMR {Aeromonas hydrophila subsp}

Probab=99.02  E-value=1.2e-08  Score=75.57  Aligned_cols=128  Identities=13%  Similarity=0.132  Sum_probs=79.6

Q ss_pred             EEEEEEeCCCHHHHHHHHhccCCcccc-ccc-ceeEEEecCCCCCCc-eEEEEeeeecCCCCCCCCCcCccceEEEEEEE
Q 030202           19 RACEELTGVKAEQIWAFLEDFFGLDKW-FPT-LTTCIPIQGISGQPG-CVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLA   95 (181)
Q Consensus        19 ~v~~~I~~Ap~e~VW~~l~Df~~~~~w-~P~-v~~~~~~~G~~~~vG-svR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~   95 (181)
                      .++++| +||+++||+++.|...+.+| ++. -..+...+.+ -.+| ..+..-.  .| +   |   .....+.-++++
T Consensus         4 ~~~~~i-~Ap~e~Vw~altdp~~~~~W~~~p~~~~~~~~~~d-~~~Gg~~~~~~~--~~-~---G---~~~~~~~g~v~e   72 (144)
T 2lgh_A            4 SIEAHI-EQEIEAVWWAWNDPDCIARWNAASSDWHTTGSRVD-LVVGGRFCHHMA--AK-D---G---SAGFDFTGTFTR   72 (144)
T ss_dssp             EEEEEE-SSCHHHHHHHHHCHHHHTTSSSCSTTEEEEEEEEC-CSTTCEEEEEEE--ET-T---S---SCEEEEEEEEEE
T ss_pred             EEEEEe-CCCHHHHHHHhCCHHHHhccCCCCCCcccceEEEC-CCCCCEEEEEEE--CC-C---C---CceEEeEEEEEE
Confidence            467889 99999999999999999999 752 1122222221 1233 4444321  12 2   3   101146778999


Q ss_pred             EecCCCeEEEEEeecccceeeEEEEEEEEEcCCceEEEEEEEEeeCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 030202           96 INAEEMTLTYSIVDGNVGFYGYVSTLTVAPKENGCYIEWKYEVEPVKGWRLEDLDCFISSGLQVMARRMKEALQA  170 (181)
Q Consensus        96 ~D~~~~~~~y~v~~g~~p~~~~~~t~~v~p~~~gT~v~W~~~~~p~~~~~~~~~~~~~~~gl~~l~~~le~~~~~  170 (181)
                      ++| ++++.|+.. +     ....+++|+|.++||+|+.+..+.+  ....+.    ...|.+.+..+|++++..
T Consensus        73 ~~p-~~~l~~~~~-~-----~~~~~~~l~~~~~gT~l~~~~~~~~--~~~~~~----~~~Gw~~~L~~L~~~le~  134 (144)
T 2lgh_A           73 VEA-PTRLSFVMD-D-----GREVDVQFASEPGGTWVQETFDAET--SHTPAQ----QQAGWQGILDNFKRYVEA  134 (144)
T ss_dssp             EET-TTEEEEEET-T-----CCEEEEEEEEETTEEEEEEEEECCT--TSCHHH----HHHHHHHHHHHHHHHHHH
T ss_pred             EeC-CCEEEEEec-C-----CcEEEEEEEEcCCCEEEEEEEECCC--HHHHHH----HHHHHHHHHHHHHHHHhh
Confidence            998 679999853 2     2567899999988999998877632  122322    345555555566555543

>1xn5_A BH1534 unknown conserved protein; structural genomics, protein structure initiative, PSI, BACI halodurans protein BH1534, alpha + beta; NMR {Bacillus halodurans} SCOP: d.129.3.5

Probab=99.02  E-value=6.4e-09  Score=77.13  Aligned_cols=124  Identities=13%  Similarity=0.168  Sum_probs=83.8

Q ss_pred             eEEEEEEeCCCHHHHHHHHhccCCcccccccceeEEEecCCCCCCceEEEEeeeecCCCCCCCCCcCccceEEEEEEEEe
Q 030202           18 GRACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLAIN   97 (181)
Q Consensus        18 ~~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~G~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~~D   97 (181)
                      =..+++| +||+++||+++.|...+++|++..      +++ ..+|..-.+..   | .   |       .+.-++++++
T Consensus         7 i~~~~~i-~Ap~e~Vw~altd~~~~~~W~~~~------~~~-~~~Gg~~~~~~---~-~---g-------~~~~~v~e~~   64 (146)
T 1xn5_A            7 IKKEVRF-NAPIEKVWEAVSTSEGLAFWFMEN------DLK-AETGHHFHLQS---P-F---G-------PSPCQVTDVE   64 (146)
T ss_dssp             EEEEEEE-SSCHHHHHHHTTSHHHHHTTSCCB------CCC-SCTTCEEEEEC---S-S---C-------EEEEEEEEEE
T ss_pred             EEEEEEE-cCCHHHHHHHHhChhHHHHhcCCC------CCC-ccCCCEEEEEe---c-C---C-------ceEEEEEEEe
Confidence            4678899 999999999999999999999852      111 23454433332   2 1   3       4688899999


Q ss_pred             cCCCeEEEEEeecccceeeEEEEEEEEEcCCceEEEEEEEEeeCCC-------CCHHHHHHHHHHHHHHHH-HHHHHHHh
Q 030202           98 AEEMTLTYSIVDGNVGFYGYVSTLTVAPKENGCYIEWKYEVEPVKG-------WRLEDLDCFISSGLQVMA-RRMKEALQ  169 (181)
Q Consensus        98 ~~~~~~~y~v~~g~~p~~~~~~t~~v~p~~~gT~v~W~~~~~p~~~-------~~~~~~~~~~~~gl~~l~-~~le~~~~  169 (181)
                      + ++++.|+...     .....+++|+|.++||+|+++...-+...       .........+..|...+. .+|++++.
T Consensus        65 p-~~~l~~~~~~-----~~~~~~~~l~~~~~gT~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~GW~~~l~~~L~~~l~  138 (146)
T 1xn5_A           65 R-PIKLSFTWDT-----DGWSVTFHLKEEENGTIFTIVHSGWKQGDTKVEKAGAESAVVHERMDRGWHDLVNERLRQIVE  138 (146)
T ss_dssp             T-TTEEEEEETT-----TTEEEEEEEEECSSSEEEEEEEECCCSTTCBCSSSSSBHHHHHHHHHHHHHHHTTTTTHHHHC
T ss_pred             C-CcEEEEEEeC-----CCEEEEEEEEEcCCCEEEEEEEEEecCCCcccccccchhHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            8 6789888653     12467899999988999999876433211       112233444666666666 67776664

>2l8o_A Uncharacterized protein; mixed alpha-beta protein, PSI-biology, structural genomics, structure initiative; NMR {Cytophaga hutchinsonii}

Probab=99.01  E-value=1.2e-08  Score=75.65  Aligned_cols=128  Identities=13%  Similarity=0.076  Sum_probs=81.3

Q ss_pred             EEEEEEeCCCHHHHHHHHhccCCcccc-ccc-ceeEEEecCCCCCCc-eEEEEeeeecCCCCCCCCCcCccceEEEEEEE
Q 030202           19 RACEELTGVKAEQIWAFLEDFFGLDKW-FPT-LTTCIPIQGISGQPG-CVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLA   95 (181)
Q Consensus        19 ~v~~~I~~Ap~e~VW~~l~Df~~~~~w-~P~-v~~~~~~~G~~~~vG-svR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~   95 (181)
                      .++++| +||+++||+++.|...+.+| ++. -..+...+.+ -.+| ..+..-.  .| +   |   .....+.-++++
T Consensus         5 ~~~~~i-~Ap~e~Vw~altdpe~~~~W~~~p~~~~~~~~~~d-~~~Gg~~~~~~~--~~-~---G---~~~~~~~g~v~e   73 (144)
T 2l8o_A            5 TVEVTV-YAAIEKVWKYWNEPAHIMKWCQASPEWHVPAAQND-LKAGGTFTTTMA--AK-D---G---SMSFDFGGVYDQ   73 (144)
T ss_dssp             EEEEEE-CSCHHHHHHHHHCHHHHHHHSTTCTTCEEEEEECC-CSTTCEEEEEEE--CT-T---S---SCEEEEEEEEEE
T ss_pred             EEEEEE-CCCHHHHHHHHCCHHHHhhccCCCCCcccceeEEc-cCCCCEEEEEEE--CC-C---C---CceeeeeEEEEE
Confidence            467889 99999999999999999999 752 2223222222 1234 4444321  12 2   3   100146778999


Q ss_pred             EecCCCeEEEEEeecccceeeEEEEEEEEEcCCceEEEEEEEEeeCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 030202           96 INAEEMTLTYSIVDGNVGFYGYVSTLTVAPKENGCYIEWKYEVEPVKGWRLEDLDCFISSGLQVMARRMKEALQA  170 (181)
Q Consensus        96 ~D~~~~~~~y~v~~g~~p~~~~~~t~~v~p~~~gT~v~W~~~~~p~~~~~~~~~~~~~~~gl~~l~~~le~~~~~  170 (181)
                      +++ +++|.|+.. +     ....+++|+|.++||+|+.+..+ +. ....+.    ...|...+..+|++++..
T Consensus        74 ~~p-~~~l~~~~~-g-----~~~v~~~l~~~~~gT~l~~~~~~-~~-~~~~~~----~~~Gw~~~L~~L~~~le~  135 (144)
T 2l8o_A           74 VKT-NDLIEYTIG-D-----GRKVRIVFTHTGDTTNIVESFDP-EE-TNPREL----QQSGWQAILNSFKSYTEN  135 (144)
T ss_dssp             EET-TTEEEEEET-T-----CCEEEEEEEECSSSEEEEEEECC-CS-SSCHHH----HHHHHHHHHHHHHHHHGG
T ss_pred             EeC-CCEEEEEeC-C-----CeEEEEEEEEcCCCEEEEEEEeC-CC-HHHHHH----HHHHHHHHHHHHHHHHHh
Confidence            998 679999853 2     25778999998889999998766 22 122322    455555666666666544

>3put_A Hypothetical conserved protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium; 1.83A {Rhizobium etli cfn 42} PDB: 3otl_A*

Probab=99.00  E-value=3.3e-08  Score=75.11  Aligned_cols=138  Identities=12%  Similarity=0.095  Sum_probs=84.3

Q ss_pred             EEEEEEeCCCHHHHHHHHhccCCcccccc-c----ceeEEEecCCCCCCc-eEEEEeeeecCCCCCCCCCcCccceEEEE
Q 030202           19 RACEELTGVKAEQIWAFLEDFFGLDKWFP-T----LTTCIPIQGISGQPG-CVRFCAGFKTPVDNKDDDHEQSVNWTKQK   92 (181)
Q Consensus        19 ~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P-~----v~~~~~~~G~~~~vG-svR~~~~~~~~~~g~~G~~~~~~~~~~Er   92 (181)
                      .++++| +||+++||+++.|-..+.+|++ .    +..+.. +   -.+| ..+....  .| +   |  . . ..+.-+
T Consensus        12 ~~~r~i-~Ap~e~Vw~a~Tdpe~l~~W~~~~~~~~~~~~~~-d---~~~GG~~~~~~~--~~-~---G--~-~-~~~~g~   76 (166)
T 3put_A           12 VIERRL-TAPVARVFRAWSTPESKRQWFACHGEWVPLEYAL-D---FRPGGTERNYTA--DT-D---G--L-L-HAYDAR   76 (166)
T ss_dssp             EEEEEE-SSCHHHHHHHHHCHHHHHHHHTCC---CCSEEEE-C---CSTTCEEEEEEE--CT-T---S--C-E-EEEEEE
T ss_pred             EEEEEE-CCCHHHHHHHhCCHHHHHhcCCCCCCceeeEEEe-C---cccCCEEEEEEE--CC-C---C--C-E-EEEEEE
Confidence            457788 9999999999999999999984 2    112222 2   1233 4444321  12 2   3  1 1 147788


Q ss_pred             EEEEecCCCeEEEEEee--cccceeeEEEEEEEEEcCCceEEEEEEEEeeCC-CCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 030202           93 LLAINAEEMTLTYSIVD--GNVGFYGYVSTLTVAPKENGCYIEWKYEVEPVK-GWRLEDLDCFISSGLQVMARRMKEALQ  169 (181)
Q Consensus        93 l~~~D~~~~~~~y~v~~--g~~p~~~~~~t~~v~p~~~gT~v~W~~~~~p~~-~~~~~~~~~~~~~gl~~l~~~le~~~~  169 (181)
                      ++++++ ++++.|+...  ...|......+++|++.++||+|+.+...-+.. ....+.    ...|...+...|++++.
T Consensus        77 v~ev~p-~~rlv~t~~~~~~~~~~~~s~vt~~l~~~~~gT~ltl~~~~~~~~~~~~~~~----~~~GW~~~L~~L~~~le  151 (166)
T 3put_A           77 YIDIVP-DTRIIYAYEMKLGQTRISASLVTVAFDVEPSGTRMVFTEQVVFLDGYGDNGA----RLQGTEIGLDNLELFLV  151 (166)
T ss_dssp             EEEEET-TTEEEEEEEEEETTEEEEEEEEEEEEEECSSSEEEEEEEEEEEETTCCCTTH----HHHHHHHHHHHHHHHHH
T ss_pred             EEEEcC-CcEEEEEEEecCCCCCCCceEEEEEEEECCCCEEEEEEEEecCccchhhHHH----HHHHHHHHHHHHHHHHh
Confidence            999998 5777776542  123444567889999998899999987765322 112222    44555555566666666


Q ss_pred             hhhhhcc
Q 030202          170 AYEVIMH  176 (181)
Q Consensus       170 ~~~~~~~  176 (181)
                      .+..-+|
T Consensus       152 ~~~~~~~  158 (166)
T 3put_A          152 RETSPIH  158 (166)
T ss_dssp             HHC----
T ss_pred             cCCCcce
Confidence            5544444

>2ldk_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Arthrobacter aurescens}

Probab=98.98  E-value=3.5e-08  Score=74.84  Aligned_cols=141  Identities=14%  Similarity=0.164  Sum_probs=88.0

Q ss_pred             eeEEEEEEeCCCHHHHHHHHhccCCccccccc-ceeEEEecCCCCCCc-eEEEEeeeecCCCCCCCCCcCccceEEEEEE
Q 030202           17 QGRACEELTGVKAEQIWAFLEDFFGLDKWFPT-LTTCIPIQGISGQPG-CVRFCAGFKTPVDNKDDDHEQSVNWTKQKLL   94 (181)
Q Consensus        17 ~~~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~-v~~~~~~~G~~~~vG-svR~~~~~~~~~~g~~G~~~~~~~~~~Erl~   94 (181)
                      .=.++++| +||+++||+++.|...+.+|++. -..+...+++ -.+| ..+....  .| +   |  .  .....-+++
T Consensus        13 ~i~~~~~i-~Ap~e~Vw~altdp~~~~~W~~p~~~~~~~~~~d-~~~Gg~~~~~~~--~~-~---g--~--~~~~~~~v~   80 (172)
T 2ldk_A           13 SFSIVAEF-DADVKRVWAIWEDPRQLERWWGPPTWPATFETHE-FTVGGKAAYYMT--GP-D---G--T--KARGWWQFT   80 (172)
T ss_dssp             EEEEEEEE-SSCHHHHHHHHHCHHHHHTTSSCTTSCEEEEEEC-CSTTCEEEEEEE--CT-T---S--C--EEEEEEEEE
T ss_pred             eEEEEEEe-CCCHHHHHHHhCCHHHHHhccCCCCcccceEEEe-ecCCCEEEEEEE--CC-C---C--C--EEeeEEEEE
Confidence            34678889 99999999999999999889752 1112222221 2344 3343321  12 2   3  1  114678899


Q ss_pred             EEecCCCeEEEEEeecc---cc---eeeEEEEEEEEEcCCceEEEEEEEEeeCCCCCHHHH-HHHHHHHHHHHHHHHHHH
Q 030202           95 AINAEEMTLTYSIVDGN---VG---FYGYVSTLTVAPKENGCYIEWKYEVEPVKGWRLEDL-DCFISSGLQVMARRMKEA  167 (181)
Q Consensus        95 ~~D~~~~~~~y~v~~g~---~p---~~~~~~t~~v~p~~~gT~v~W~~~~~p~~~~~~~~~-~~~~~~gl~~l~~~le~~  167 (181)
                      ++++ ++++.|+....+   .|   +.....+++|+|.++||+|+++..+.+..  ..+.+ ...+..|.+.+..+|+++
T Consensus        81 e~~p-~~rl~~~~~~~~~~g~p~~~~~~~~v~~~l~~~~~gT~lt~~~~~~~~~--~~~~~~~~~~~~Gw~~~L~~L~~~  157 (172)
T 2ldk_A           81 TIEA-PDHLEFDDGFADEHGAPVDELGVTHATVKLEPLENRTRMTIISTFESEE--QMQKMAEMGMEEGMREAIEQIDAV  157 (172)
T ss_dssp             EECS-SSEEEEEEEEBCSSCCBCTTTCEEEEEEEEEEETTEEEEEEEEEESCHH--HHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred             EEcC-CCEEEEEEeecCCCCCccCCCccEEEEEEEEEcCCCEEEEEEEEcCCHH--HHHHHHHhhHHHHHHHHHHHHHHH
Confidence            9988 678888765321   12   12467889999998899999998874321  11111 112467777777788887


Q ss_pred             Hhhhh
Q 030202          168 LQAYE  172 (181)
Q Consensus       168 ~~~~~  172 (181)
                      +.++.
T Consensus       158 le~~~  162 (172)
T 2ldk_A          158 LSEPA  162 (172)
T ss_dssp             HTCCS
T ss_pred             HHHhH
Confidence            76553

>1xfs_A NC_840354, conserved hypothetical protein; structural genomics, protein structure initiative, NESG, ALP protein, PSI; 1.70A {Nitrosomonas europaea} SCOP: d.129.3.5

Probab=98.98  E-value=2.4e-08  Score=76.24  Aligned_cols=138  Identities=14%  Similarity=0.094  Sum_probs=84.1

Q ss_pred             eeEEEEEEeCCCHHHHHHHHhccCCccccccc-ceeEEEecCCCCCCceEEEEeeeecCCCCCCCCCcCccceEEEEEEE
Q 030202           17 QGRACEELTGVKAEQIWAFLEDFFGLDKWFPT-LTTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLA   95 (181)
Q Consensus        17 ~~~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~-v~~~~~~~G~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~   95 (181)
                      .=.++++| +||+++||+++.|...+.+|++. -..+...+++ -.+|..-.+.+. .| +   |   . ...+.-++++
T Consensus        11 ~i~~~r~i-~Ap~e~Vw~altdp~~~~~W~~p~~~~~~~~~~d-~~~Gg~~~~~~~-~~-~---G---~-~~~~~~~v~e   79 (178)
T 1xfs_A           11 DLMLKREL-AVPVNLVWRGLTEPELLKKWFVPKPWSISDCRVD-LRPGGEFYTVMQ-DP-E---G---N-KFPNSGCFLE   79 (178)
T ss_dssp             EEEEEEEE-SSCHHHHHHHHHCHHHHTTTSSCTTCEEEEEEEC-CSTTCEEEEEEE-CT-T---C---C-EEEEEEEEEE
T ss_pred             eEEEEEEe-cCCHHHHHHHhCCHHHHhhCCCCCCeeeeEEEEe-eECCcEEEEEEE-CC-C---C---C-EEEEEEEEEE
Confidence            34667889 99999999999999999999753 1122222222 234533333221 12 2   3   1 1156778999


Q ss_pred             EecCCCeEEEEEeecc--ccee------------eEEEEEEEEEcCCceEEEEEEEEeeCCCCCHHHHHHH----HHHHH
Q 030202           96 INAEEMTLTYSIVDGN--VGFY------------GYVSTLTVAPKENGCYIEWKYEVEPVKGWRLEDLDCF----ISSGL  157 (181)
Q Consensus        96 ~D~~~~~~~y~v~~g~--~p~~------------~~~~t~~v~p~~~gT~v~W~~~~~p~~~~~~~~~~~~----~~~gl  157 (181)
                      +++ +++|.|+.....  .|..            ....+++|+|.++||+|+++..+.+     .+.....    +..|.
T Consensus        80 ~~p-~~rl~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~l~~~~~gT~l~~~~~~~~-----~~~~~~~~~~~~~~Gw  153 (178)
T 1xfs_A           80 VTD-EKRLIWTSALVKNYRPAVPATTSDKECAHIVMTAVIELQPTSSGTRYTACAMHNT-----PGQRKLHEEMGFHEGW  153 (178)
T ss_dssp             EET-TTEEEEESSEEGGGEECCC-----------CCEEEEEEEECSSSEEEEEEEECSS-----HHHHHHHHTTTHHHHH
T ss_pred             EeC-CCEEEEEEEEcCCCCccccccccccccccccEEEEEEEEECCCCEEEEEEEEcCC-----HHHHHHHHhhhHHHHH
Confidence            998 678888765221  1211            3578899999988999999988642     1112111    24566


Q ss_pred             HHHHHHHHHHHhhh
Q 030202          158 QVMARRMKEALQAY  171 (181)
Q Consensus       158 ~~l~~~le~~~~~~  171 (181)
                      +.+..+|++++.+.
T Consensus       154 ~~~l~~L~~~le~~  167 (178)
T 1xfs_A          154 GTTITQLEELLKQE  167 (178)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhh
Confidence            66666666666544

>2nn5_A Hypothetical protein EF_2215; structural genomics, APC29336, PSI-2, structure initiative; HET: MSE; 1.45A {Enterococcus faecalis} SCOP: d.129.3.5

Probab=98.97  E-value=2.5e-08  Score=77.39  Aligned_cols=123  Identities=13%  Similarity=0.161  Sum_probs=81.9

Q ss_pred             eeEEEEEEeCCCHHHHHHHHhccCCcccccccceeEEEecCCCCCCceEEEEeeeecCCCCCCCCCcCccceEEEEEEEE
Q 030202           17 QGRACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLAI   96 (181)
Q Consensus        17 ~~~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~G~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~~   96 (181)
                      .=.++++| +||+++||+++.|...+++|+|.........|     |..+....      +         ....-+++++
T Consensus        37 ~i~~~~~i-~Ap~e~VW~altdp~~l~~W~~~~~~~d~~~G-----g~~~~~~~------~---------~~~~~~v~e~   95 (184)
T 2nn5_A           37 YFGTERAI-SASPQTIWRYLTETDKLKQWFPELEIGELGVN-----GFWRFILP------D---------FEETMPFTDY   95 (184)
T ss_dssp             EEEEEEEE-SSCHHHHHHHHHCHHHHHHHCTTEEEEECSTT-----CEEEEEET------T---------EEEEEEEEEE
T ss_pred             EEEEEEEe-CCCHHHHHHHHcCHHHHHHhCCCccccccCCC-----CEEEEEEe------C---------CCceEEEEEe
Confidence            44568889 99999999999999999999985433222112     34443321      1         1355688999


Q ss_pred             ecCCCeEEEEEeecccceeeEEEEEEEEE-cCCceEEEEEEEEee-CCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 030202           97 NAEEMTLTYSIVDGNVGFYGYVSTLTVAP-KENGCYIEWKYEVEP-VKGWRLEDLDCFISSGLQVMARRMKEALQAYEV  173 (181)
Q Consensus        97 D~~~~~~~y~v~~g~~p~~~~~~t~~v~p-~~~gT~v~W~~~~~p-~~~~~~~~~~~~~~~gl~~l~~~le~~~~~~~~  173 (181)
                      ++ ++++.|+.. +      ...+++|+| .++||+|+++..|.. ... ..+    ....|.+.+..+|++++..+..
T Consensus        96 ~p-~~rl~~~~~-~------~~v~~~l~~~~~~gT~l~~~~~~~~g~~~-~~~----~~~~GW~~~L~~Lk~~le~g~~  161 (184)
T 2nn5_A           96 AE-EKYLGVTWD-T------GIIYFDLKEQAPHQTLLVFSESLPENFTT-PRH----KDIAGWSIVLNRLKQVVETPDA  161 (184)
T ss_dssp             ET-TTEEEEEET-T------EEEEEEEEEEETTEEEEEEEEEECTTCSS-CHH----HHHHHHHHHHHHHHHHHHCTTC
T ss_pred             cC-CCEEEEEEc-C------eEEEEEEEECCCCCEEEEEEEeccCCccc-hhh----HHHHHHHHHHHHHHHHHhcCCC
Confidence            88 578888753 1      467899999 788899999954432 111 122    2456666777777777766543

>2lf2_A Uncharacterized protein; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics consortium; NMR {Cytophaga hutchinsonii}

Probab=98.93  E-value=2e-08  Score=76.79  Aligned_cols=142  Identities=12%  Similarity=0.100  Sum_probs=89.2

Q ss_pred             eeEEEEEEeCCCHHHHHHHHhccCCcccccc-cceeEEEecCCCCCCc-eEEEEeeeecCCCCCCCCCcCccceEEEEEE
Q 030202           17 QGRACEELTGVKAEQIWAFLEDFFGLDKWFP-TLTTCIPIQGISGQPG-CVRFCAGFKTPVDNKDDDHEQSVNWTKQKLL   94 (181)
Q Consensus        17 ~~~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P-~v~~~~~~~G~~~~vG-svR~~~~~~~~~~g~~G~~~~~~~~~~Erl~   94 (181)
                      .=.++++| +||+++||+++.|...+.+|++ .-..+...+++ -.+| ..|....  .| +   |  .  ...+.-+++
T Consensus        17 ~i~~~~~i-~Ap~e~Vw~a~tdpe~~~~W~~p~~~~~~~~~~d-~~~Gg~~~~~~~--~~-~---G--~--~~~~~g~v~   84 (175)
T 2lf2_A           17 TITIKREF-AAVRAIVWEAFTRAEILDQWWAPKPWKAKTKSMD-FKEGGTWLYAMV--GP-N---G--E--EHWSICEYA   84 (175)
T ss_dssp             EEEEEEEE-SSCHHHHHHHHTCHHHHHHSSSSSSSEEEEEEEC-CSTTCEEEEEEE--CS-S---S--C--EEEEEEEEC
T ss_pred             eEEEEEEE-cCCHHHHHHHhCCHHHHhhCcCCCCccceEEEEe-ccCCCEEEEEEE--CC-C---C--C--EEEeEEEEE
Confidence            45678889 9999999999999999999974 21122222222 1244 4444321  12 2   3  1  114678899


Q ss_pred             EEecCCCeEEEEEeecc---cc---eeeEEEEEEEEEcCCceEEEEEEEEeeCCCCCHHHHHH----HHHHHHHHHHHHH
Q 030202           95 AINAEEMTLTYSIVDGN---VG---FYGYVSTLTVAPKENGCYIEWKYEVEPVKGWRLEDLDC----FISSGLQVMARRM  164 (181)
Q Consensus        95 ~~D~~~~~~~y~v~~g~---~p---~~~~~~t~~v~p~~~gT~v~W~~~~~p~~~~~~~~~~~----~~~~gl~~l~~~l  164 (181)
                      ++++ +++|.|+....+   .|   +.....+++|+|.++||+|+.+..+.+     .+....    .+..|...+..+|
T Consensus        85 e~~p-~~rl~~t~~~~~~~g~p~~~~~~~~v~~~l~~~~~gT~l~~~~~~~~-----~~~~~~~~~~~~~~Gw~~~L~~L  158 (175)
T 2lf2_A           85 IIKP-IERFTGKDGFTDASGKLNTEMPRSNWDMRFIDKGEITEVQYHISYDD-----VAQLEATIQMGFKEGITMAMENL  158 (175)
T ss_dssp             CCCS-SSEEEEEEEEESSTTCCCTTSCCEEEEEEEEEETTEEEEEEEEECSC-----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEcC-CCEEEEEEEecCCCCCcCCCCCcEEEEEEEEECCCCEEEEEEEecCC-----HHHHHHHHHHhHHHHHHHHHHHH
Confidence            9988 678877764321   12   224678999999988999999877532     222211    2466777777788


Q ss_pred             HHHHhhhhhhcc
Q 030202          165 KEALQAYEVIMH  176 (181)
Q Consensus       165 e~~~~~~~~~~~  176 (181)
                      ++++......-|
T Consensus       159 ~~~le~~~~~~~  170 (175)
T 2lf2_A          159 DELLVSGKKLEH  170 (175)
T ss_dssp             HHHHHHHHSCCC
T ss_pred             HHHHHhCchhhh
Confidence            887776655443

>3eli_A AHSA1, AHA1 domain protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.80A {Silicibacter pomeroyi} SCOP: d.129.3.5

Probab=98.92  E-value=4.1e-08  Score=73.10  Aligned_cols=133  Identities=11%  Similarity=-0.006  Sum_probs=80.3

Q ss_pred             EEEEEEeCCCHHHHHHHHhccCCccccccc-ceeEE--EecCCCCCCc-eEEEEeeeecCCCCCCCCCcCccceEEEEEE
Q 030202           19 RACEELTGVKAEQIWAFLEDFFGLDKWFPT-LTTCI--PIQGISGQPG-CVRFCAGFKTPVDNKDDDHEQSVNWTKQKLL   94 (181)
Q Consensus        19 ~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~-v~~~~--~~~G~~~~vG-svR~~~~~~~~~~g~~G~~~~~~~~~~Erl~   94 (181)
                      .++++| +||+++||+++.|...+.+|++. -..+.  ..+. +-.+| ..+....  .| +   |  .  ...+.-+++
T Consensus         5 ~~~r~i-~Ap~e~Vw~altdp~~~~~W~~~~~~~~~~~~~~~-d~~~Gg~~~~~~~--~~-~---G--~--~~~~~g~v~   72 (152)
T 3eli_A            5 RLEREF-AVAPEALFAWVSDGAKLLQWWGPEGLHVPADQHDL-DFTRLGPWFSVMV--NG-E---G--Q--RYKVSGQVT   72 (152)
T ss_dssp             EEEEEE-SSCHHHHHHHTTCHHHHHHHCSSTTCBCCTTSBCC-CCSSSEEEEEEEE--CT-T---C--C--EEEEEEEEE
T ss_pred             EEEEEE-CCCHHHHHHHHcCHHHHhhccCCCCcccccceeEE-cccCCcEEEEEEE--CC-C---C--C--EEEEEEEEE
Confidence            467889 99999999999999999999862 11111  1112 12344 4443321  12 2   3  1  115778899


Q ss_pred             EEecCCCeEEEEEeeccc---ceeeEEEEEEEEEcCCceEEEEEEEEeeCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 030202           95 AINAEEMTLTYSIVDGNV---GFYGYVSTLTVAPKENGCYIEWKYEVEPVKGWRLEDLDCFISSGLQVMARRMKEALQ  169 (181)
Q Consensus        95 ~~D~~~~~~~y~v~~g~~---p~~~~~~t~~v~p~~~gT~v~W~~~~~p~~~~~~~~~~~~~~~gl~~l~~~le~~~~  169 (181)
                      ++++ ++++.|+......   +......+++|+|.++||+|+.+-.--+    ..+. ......|-..+...|+++++
T Consensus        73 e~~p-~~~l~~~~~~~~~~~~~~~~~~v~~~l~~~~~gT~l~l~~~~~~----~~~~-~~~~~~GW~~~L~~L~~~l~  144 (152)
T 3eli_A           73 HVKP-PQSVGFTWGWHDDDDRRGAESHVMFIVEPCAKGARLILDHRELG----DDEM-SLRHEEGWTSSLRKLAAELA  144 (152)
T ss_dssp             EEET-TTEEEEEEEEECTTSCEEEEEEEEEECCBC--CEEEEEEEESCS----CHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred             EEcC-CCEEEEEEeecCCCCCCCCcEEEEEEEEECCCCEEEEEEEccCC----CHHH-HHHHHHHHHHHHHHHHHHHh
Confidence            9998 6788877653222   1234677889999888899998644211    1222 33456666666667766653

>2kew_A Uncharacterized protein YNDB; start domain, resonance assignments, lipid binding, structural genomics, unknown FU PSI-2; NMR {Bacillus subtilis subsp} PDB: 2kte_A

Probab=98.91  E-value=2.9e-09  Score=79.60  Aligned_cols=129  Identities=16%  Similarity=0.149  Sum_probs=87.1

Q ss_pred             eeEEEEEEeCCCHHHHHHHHhccCCcccccccceeEEEecCCCCCCceEEEEeeeecCCCCCCCCCcCccceEEEEEEEE
Q 030202           17 QGRACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLAI   96 (181)
Q Consensus        17 ~~~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~G~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~~   96 (181)
                      .=..+++| +||+++||+++.|...+++|++.+      +++ -.+|....+..   | .   |       .+.-+++++
T Consensus        11 ~i~~~~~i-~Ap~e~Vw~altd~~~~~~W~~~~------~~~-~~~Gg~~~~~~---~-~---g-------~~~~~v~e~   68 (152)
T 2kew_A           11 DITKSITL-EAPIQKVWETVSTSEGIAKWFMPN------DFQ-LKEGQEFHLQS---P-F---G-------PSPCKVLAV   68 (152)
T ss_dssp             CEEEEEEE-CSCHHHHHHHSSSSHHHHHHHCSC------CCC-SCSSCCBCSSS---S-C---C-------SCCBEEEEE
T ss_pred             EEEEEEEE-CCCHHHHHHHHhCHHHHHHhcCCC------CCC-CCCCCEEEEEe---c-C---C-------ceEEEEEEE
Confidence            45678889 999999999999999999998862      111 12444222221   2 1   2       245578899


Q ss_pred             ecCCCeEEEEEeecccceeeEEEEEEEEEcCCceEEEEEEEEeeCC--CC-----CHHHHHHHHHHHHHHHH-HHHHHHH
Q 030202           97 NAEEMTLTYSIVDGNVGFYGYVSTLTVAPKENGCYIEWKYEVEPVK--GW-----RLEDLDCFISSGLQVMA-RRMKEAL  168 (181)
Q Consensus        97 D~~~~~~~y~v~~g~~p~~~~~~t~~v~p~~~gT~v~W~~~~~p~~--~~-----~~~~~~~~~~~gl~~l~-~~le~~~  168 (181)
                      ++ ++++.|+...+     ....+++|+|.++||+|+++..--+..  +.     ...........|.+.+. ..|++++
T Consensus        69 ~p-~~~l~~~~~~~-----~~~~~~~l~~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GW~~~l~~~L~~~l  142 (152)
T 2kew_A           69 QA-PTELSFEWDTE-----GWVVTFQLEDLGEKTGFTLIHSGWKEPNQVIGKANEKSSVVRGKMDGGWTGIVNERLRKAV  142 (152)
T ss_dssp             ET-TTEEEEECTTS-----CCEEEEEEECCSSCEEEEEEECCSSCCSBCSSSSSSBHHHHHHHHHHHHHHHTTTHHHHHH
T ss_pred             eC-CcEEEEEEccC-----CEEEEEEEEECCCCEEEEEEEEeccCcccccccccchhHHHHHHHHHhHHHHHHHHHHHHH
Confidence            88 67899875543     346789999988899999876532211  11     12333455777888888 8888888


Q ss_pred             hhhhh
Q 030202          169 QAYEV  173 (181)
Q Consensus       169 ~~~~~  173 (181)
                      ..++-
T Consensus       143 e~g~~  147 (152)
T 2kew_A          143 EELEH  147 (152)
T ss_dssp             TCSCS
T ss_pred             hcccc
Confidence            77654

>3pu2_A Uncharacterized protein; SRPBCC superfamily, PSI-biology, NESG, RHR263, structural GE protein structure initiative; HET: MSE; 2.61A {Rhodobacter sphaeroides}

Probab=98.91  E-value=5.3e-08  Score=73.78  Aligned_cols=140  Identities=16%  Similarity=0.146  Sum_probs=86.2

Q ss_pred             eeEEEEEEeCCCHHHHHHHHhccCCccccccc-ceeEEEecCCCCCCc-eEEEEeeeecCCCCCCCCCcCccceEEEEEE
Q 030202           17 QGRACEELTGVKAEQIWAFLEDFFGLDKWFPT-LTTCIPIQGISGQPG-CVRFCAGFKTPVDNKDDDHEQSVNWTKQKLL   94 (181)
Q Consensus        17 ~~~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~-v~~~~~~~G~~~~vG-svR~~~~~~~~~~g~~G~~~~~~~~~~Erl~   94 (181)
                      .=.++++| +||+++||+++.|...+.+|++. -..+...+++ -.+| ..+....  .| +   |  . . ..+.-+++
T Consensus        14 ~i~~~~~i-~Ap~e~Vw~altdp~~~~~W~~~~~~~~~~~~~d-~~~Gg~~~~~~~--~~-~---G--~-~-~~~~g~v~   81 (164)
T 3pu2_A           14 RLEFRRHF-AATPEQLWAALTSPALLPAWLFARGWPMTECVFE-PHKGGLIRQVWT--GP-E---G--R-T-RGLTGRVI   81 (164)
T ss_dssp             EEEEEEEE-SSCHHHHHHHHHCTTTGGGTSCBTTBCEEEEEEC-CSTTCEEEEEEE--CG-G---G--C-E-EEEEEEEE
T ss_pred             eEEEEEEE-CCCHHHHHHHhcCHHHHhhEeCCCCeeeEEEEEe-ccCCCEEEEEEE--CC-C---C--C-E-EEEEEEEE
Confidence            34568889 99999999999999999999962 1112222222 2344 4444321  11 2   2  1 1 15678899


Q ss_pred             EEecCCCeEEEEEeecc--cceeeEEEEEEEEEcCCceEEEEEEEEeeCCCCCHHHH-HHHHHHHHHHHHHHHHHHHhhh
Q 030202           95 AINAEEMTLTYSIVDGN--VGFYGYVSTLTVAPKENGCYIEWKYEVEPVKGWRLEDL-DCFISSGLQVMARRMKEALQAY  171 (181)
Q Consensus        95 ~~D~~~~~~~y~v~~g~--~p~~~~~~t~~v~p~~~gT~v~W~~~~~p~~~~~~~~~-~~~~~~gl~~l~~~le~~~~~~  171 (181)
                      +++| ++++.|+..-..  .| .....+++|+|.++||+|+++..|...  ...+.. ...+..|...+..+|++++.+-
T Consensus        82 e~~p-~~rl~~t~~~~~~~~~-~~s~vt~~l~~~~~gT~l~l~~~~~~~--~~~~~~~~~~~~~GW~~~L~~L~~~l~~~  157 (164)
T 3pu2_A           82 LAEP-PHRLIHSELYDEDWTG-GETLVTLQLLPVEGGTELAMAVDYATP--EARDAVAASAMATEMEEAYRHLDVMLAAL  157 (164)
T ss_dssp             EEET-TTEEEEEEBCC---CC-SCEEEEEEEEEETTEEEEEEEEECSST--THHHHHHTSTHHHHHHHHHHHHHHHHHHC
T ss_pred             EEcC-CCEEEEEEeccCCCCC-CCEEEEEEEEEcCCCEEEEEEEEeCCH--HHHHHHHHhhHHHHHHHHHHHHHHHHHHh
Confidence            9998 678888764211  22 135778999999889999999885421  112211 1224566667777777776554


Q ss_pred             h
Q 030202          172 E  172 (181)
Q Consensus       172 ~  172 (181)
                      +
T Consensus       158 ~  158 (164)
T 3pu2_A          158 E  158 (164)
T ss_dssp             -
T ss_pred             h
Confidence            3

>2l9p_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Staphylococcus epidermidis}

Probab=98.86  E-value=2.9e-08  Score=74.91  Aligned_cols=136  Identities=10%  Similarity=0.093  Sum_probs=84.4

Q ss_pred             EEEEEEeCCCHHHHHHHHhccCCccccccc-ceeEEEecCCCCCCc-eEEEEeeeecCCCCCCCCCcCccceEEEEEEEE
Q 030202           19 RACEELTGVKAEQIWAFLEDFFGLDKWFPT-LTTCIPIQGISGQPG-CVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLAI   96 (181)
Q Consensus        19 ~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~-v~~~~~~~G~~~~vG-svR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~~   96 (181)
                      .++++| +||+++||+++.|...+.+|++. -..+...+++ -.+| ..+..-.  .| +   |   ..  .+.-+++++
T Consensus        11 ~~~~~i-~Ap~e~Vw~a~tdpe~~~~W~~p~~~~~~~~~~d-~~~Gg~~~~~~~--~~-~---G---~~--~~~g~v~e~   77 (164)
T 2l9p_A           11 IFTRTF-SAPINKVFDAYTKRELFEQWFHPQDASVTVYDFN-ATKGGSAFYAIQ--AP-Q---M---IS--YTIAEYLQV   77 (164)
T ss_dssp             EECCEE-SSCHHHHHHHHHCHHHHTTTCCCTTCEEEEEECC-CSTTEEEEEEEE--ET-T---E---EE--EEEEEESCC
T ss_pred             EEEEEe-CCCHHHHHHHhCCHHHHHhccCCCCceeeEEEEe-ccCCCEEEEEEE--CC-C---C---CE--EEEEEEEEE
Confidence            567788 99999999999999999999752 1122222332 2345 3444321  12 2   3   11  267889999


Q ss_pred             ecCCCeEEEEEeecc---cc---eeeEEEEEEEEEcCCceEEEEEEEEeeCCCCCHHHHHH-HHHHHHHHHHHHHHHHHh
Q 030202           97 NAEEMTLTYSIVDGN---VG---FYGYVSTLTVAPKENGCYIEWKYEVEPVKGWRLEDLDC-FISSGLQVMARRMKEALQ  169 (181)
Q Consensus        97 D~~~~~~~y~v~~g~---~p---~~~~~~t~~v~p~~~gT~v~W~~~~~p~~~~~~~~~~~-~~~~gl~~l~~~le~~~~  169 (181)
                      ++ +++|.|+....+   .|   ......+++|++.++||+|+.+..+.+.  ...+.+.. .+..|...+..+|++++.
T Consensus        78 ~p-~~rl~~t~~~~~~~g~p~~~~~~~~v~~~l~~~~~gT~l~~~~~~~~~--~~~~~~~~~~~~~Gw~~~L~~L~~~le  154 (164)
T 2l9p_A           78 DA-PYYIEYLDYFATSKGEKDTSMPGMHITLNFEEVKGKTTVTSTSTFPTE--SAAQQAIDMGVETGMNSTLNQLEKLLN  154 (164)
T ss_dssp             BT-TTEEEEEEEEEBTTBSCCSSSCCEEEEEEECCCSSSEEEEEEEECSST--THHHHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred             cC-CCEEEEEEEecCCCCCccCCCCceEEEEEEEECCCCEEEEEEEEcCCH--HHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            88 678887765321   11   2246778999998889999999876432  12222211 256666777777777765


Q ss_pred             h
Q 030202          170 A  170 (181)
Q Consensus       170 ~  170 (181)
                      +
T Consensus       155 ~  155 (164)
T 2l9p_A          155 Q  155 (164)
T ss_dssp             S
T ss_pred             H
Confidence            4

>3uid_A Putative uncharacterized protein; SRPBCC superfamily, beta sandwich, function, structural genomics, TB structural genomics conso TBSGC; 1.57A {Mycobacterium smegmatis} SCOP: d.129.3.0

Probab=98.83  E-value=6.8e-08  Score=73.64  Aligned_cols=139  Identities=14%  Similarity=0.108  Sum_probs=85.0

Q ss_pred             eEEEEEEeCCCHHHHHHHHhccCCcccccc-cceeEEEecCCCCCC-ceEEEEeeeecCCCCCCCCCcCccceEEEEEEE
Q 030202           18 GRACEELTGVKAEQIWAFLEDFFGLDKWFP-TLTTCIPIQGISGQP-GCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLA   95 (181)
Q Consensus        18 ~~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P-~v~~~~~~~G~~~~v-GsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~   95 (181)
                      =.++++| +||+++||+++.|-..+.+|++ .-..+...+.+ -.+ |..+..-.  .| +   |  . . ..+.-++++
T Consensus        15 i~~~r~i-~Ap~e~Vw~a~Tdpe~l~~W~~p~~~~~~~~~~d-~r~GG~~~~~~~--~~-~---G--~-~-~~~~g~~~e   82 (168)
T 3uid_A           15 LTITAEF-AAPVTRIWQIYADPRQLEKVWGPPSHPATVVDHD-LRPGGRVTYFMT--GP-D---G--E-K-YAGYWEITA   82 (168)
T ss_dssp             EEEEEEE-SSCHHHHHHHHHSHHHHHHHHCCTTSCCEEEEEC-CSTTCEEEEEEE--CT-T---S--C-E-EEEEEEEEE
T ss_pred             EEEEEEE-cCCHHHHHHHhCCHHHHhhEeCCCCeeeeEEEEc-ccCCcEEEEEEE--CC-C---C--C-E-EeeEEEEEE
Confidence            3568889 9999999999999999999974 21122222221 123 34554421  12 2   3  1 1 147788999


Q ss_pred             EecCCCeEEEEEeec---ccc---eeeEEEEEEEEEcCCceEEEEEEEEeeCCCCCHHHHHH-HHHHHHHHHHHHHHHHH
Q 030202           96 INAEEMTLTYSIVDG---NVG---FYGYVSTLTVAPKENGCYIEWKYEVEPVKGWRLEDLDC-FISSGLQVMARRMKEAL  168 (181)
Q Consensus        96 ~D~~~~~~~y~v~~g---~~p---~~~~~~t~~v~p~~~gT~v~W~~~~~p~~~~~~~~~~~-~~~~gl~~l~~~le~~~  168 (181)
                      +++ ++++.|+-...   ..|   ......+++|++.++||+|+.+..|...  ...+.+.. .+..|...+..+|++++
T Consensus        83 v~p-~~rlv~t~~~~~~~g~p~~~~~~s~vt~~l~~~~~gT~lt~~~~~~~~--~~~~~~~~~g~~~GW~~~L~~L~~~l  159 (168)
T 3uid_A           83 VDE-PHSFSFLDGFADEDFNPNTDLPVSTNVYTFTEHDGGTRATYVGTYASA--EALQQVLDMGVIEGASSAINQIDALL  159 (168)
T ss_dssp             EET-TTEEEEEEEEECTTSCBCSSCCCEEEEEEEEEETTEEEEEEEEECSCH--HHHHHHHHTTHHHHHHHHHHHHHHHT
T ss_pred             EeC-CcEEEEEEeeccCCCCcCCCCCcEEEEEEEEECCCCEEEEEEEecCCH--HHHHHHHHhcHHHHHHHHHHHHHHHH
Confidence            998 56777765321   112   1245789999999889999998654321  11111111 25677777888888877


Q ss_pred             hhh
Q 030202          169 QAY  171 (181)
Q Consensus       169 ~~~  171 (181)
                      .+-
T Consensus       160 ~~~  162 (168)
T 3uid_A          160 TAT  162 (168)
T ss_dssp             CSC
T ss_pred             Hhh
Confidence            553

>2k5g_A Uncharacterized protein; structural genomiccs, protein structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} SCOP: d.129.3.5

Probab=98.67  E-value=2.5e-07  Score=71.83  Aligned_cols=130  Identities=13%  Similarity=0.048  Sum_probs=80.6

Q ss_pred             eeEEEEEEeCCCHHHHHHHHhccCCcccccccceeEEEecCCCCCCceEEEEeeeecCC-------C-----CCCCCCcC
Q 030202           17 QGRACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAGFKTPV-------D-----NKDDDHEQ   84 (181)
Q Consensus        17 ~~~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~G~~~~vGsvR~~~~~~~~~-------~-----g~~G~~~~   84 (181)
                      .=.++++| +||+++||+++.|...+.+|++..   .   . .-.+|..-.+.+. .+.       .     |  +    
T Consensus        20 ~i~~~~~i-~Ap~e~Vw~altdpe~~~~W~~~~---~---~-d~~~Gg~~~~~~~-~~~~~~~~~p~~~~~~g--~----   84 (191)
T 2k5g_A           20 SIRFERLL-PGPIERVWAWLADADKRARWLAGG---E---L-PRQPGQTFELHFN-HAALTAETAPARYAQYD--R----   84 (191)
T ss_dssp             SEEEEEEE-SSSSHHHHHHHHCHHHHTTTSCCC---C---C-CSSTTCEEEEEEC-GGGSCCSSCCSSCSGGG--S----
T ss_pred             eEEEEEEe-CCCHHHHHHHHcCHHHHhhcCCCC---C---C-CccCCCEEEEEEc-CCccccccCcccccccC--C----
Confidence            34678889 999999999999999999999863   1   1 1234433333321 110       0     0  0    


Q ss_pred             ccceEEEEEEEEecCCCeEEEEEeecccceeeEEEEEEEEEcCCceEEEEEEE-EeeCCCCCHHHHHHHHHHHHHHHHHH
Q 030202           85 SVNWTKQKLLAINAEEMTLTYSIVDGNVGFYGYVSTLTVAPKENGCYIEWKYE-VEPVKGWRLEDLDCFISSGLQVMARR  163 (181)
Q Consensus        85 ~~~~~~Erl~~~D~~~~~~~y~v~~g~~p~~~~~~t~~v~p~~~gT~v~W~~~-~~p~~~~~~~~~~~~~~~gl~~l~~~  163 (181)
                       ...+.-+++++++ ++++.|+......+ .....+++|++.++||+|+.+.. +..     .+ ....+..|.+.+..+
T Consensus        85 -~~~~~g~v~e~~p-p~rl~~~~~~~~~~-~~~~v~~~l~~~~~gT~l~~~~~~~~~-----~~-~~~~~~~GW~~~L~~  155 (191)
T 2k5g_A           85 -PIVARHTLLRCEP-PRVLALTWGGGAGE-APSEVLFELSEAGEQVRLVLTHTRLAD-----RA-AMLDVAGGWHAHLAV  155 (191)
T ss_dssp             -CEEEEEEEEEEET-TTEEEEECCCCSSS-SCCEEEEEEEECSSSEEEEEEEECCCS-----HH-HHHHHTTTTTTHHHH
T ss_pred             -CceeEEEEEEecC-CCEEEEEeecCCCC-CCEEEEEEEEEcCCCEEEEEEEecCCC-----HH-HHHHHHHhHHHHHHH
Confidence             0146788999998 67898876544322 23467899999988999998876 431     11 122344444445555


Q ss_pred             HHHHHhh
Q 030202          164 MKEALQA  170 (181)
Q Consensus       164 le~~~~~  170 (181)
                      |++++..
T Consensus       156 L~~~le~  162 (191)
T 2k5g_A          156 LAGKLAG  162 (191)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHCC
Confidence            5555543

>1x53_A Activator of 90 kDa heat shock protein ATPase homolog 1; AHA1, HSP90,DUF704, C-terminal domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.129.3.5

Probab=98.67  E-value=2.2e-08  Score=74.03  Aligned_cols=125  Identities=11%  Similarity=-0.042  Sum_probs=79.6

Q ss_pred             eEEEEEEeCCCHHHHHHHHhccCCcccccccceeEEEecCCCCCCceEEEEeeeecCCCCCCCCCcCccceEEEEEEEEe
Q 030202           18 GRACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLAIN   97 (181)
Q Consensus        18 ~~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~G~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~~D   97 (181)
                      =.++++| +||+++||+++.|-..+.+|++.....+.      .+|..  +.+.    +   |       .+.=++++++
T Consensus        13 i~~~~~i-~ap~e~Vw~altdp~~~~~W~~~~~~~d~------~~Gg~--~~~~----~---G-------~~~g~v~e~~   69 (145)
T 1x53_A           13 ITLKETF-LTSPEELYRVFTTQELVQAFTHAPATLEA------DRGGK--FHMV----D---G-------NVSGEFTDLV   69 (145)
T ss_dssp             EEEEEEE-SSCHHHHHHHTTCHHHHHHHSCSCCBCCC------STTCC--CBBT----T---T-------TEECCEEEEE
T ss_pred             EEEEEEE-CCCHHHHHHHhCCHHHHHHhcCCCceEEC------CCCCE--EEEE----C---C-------eeEEEEEEEe
Confidence            3567888 99999999999999999999864322221      12321  1210    1   2       1444678888


Q ss_pred             cCCCeEEEEEeecccce-eeEEEEEEEEEcCCceEEEEEEEEeeCCCCCHHHHHHHHHHHHHH-HHHHHHHHHhhhh
Q 030202           98 AEEMTLTYSIVDGNVGF-YGYVSTLTVAPKENGCYIEWKYEVEPVKGWRLEDLDCFISSGLQV-MARRMKEALQAYE  172 (181)
Q Consensus        98 ~~~~~~~y~v~~g~~p~-~~~~~t~~v~p~~~gT~v~W~~~~~p~~~~~~~~~~~~~~~gl~~-l~~~le~~~~~~~  172 (181)
                      + ++++.|+-.....|. .....+++|.+.+++|+|+.+...-|..     . ......|.+. +...|++++..+-
T Consensus        70 p-~~~l~~~~~~~~~~~~~~~~v~~~l~~~~~gT~l~~~~~~~~~~-----~-~~~~~~Gw~~~~l~~L~~~le~g~  139 (145)
T 1x53_A           70 P-EKHIVMKWRFKSWPEGHFATITLTFIDKNGETELCMEGRGIPAP-----E-EERTRQGWQRYYFEGIKQTFGYGA  139 (145)
T ss_dssp             T-TTEEEEEEEETTSCTTCCEEEEEECCBCSSCEEEEEEEEEEEHH-----H-HHHHHHTTHHHHHHHHHHHTCCCC
T ss_pred             C-CCEEEEEEecCCCCCCCcEEEEEEEEECCCCEEEEEEEECCCHH-----H-HHHHHhchhHHHHHHHHHHHhcCc
Confidence            7 678887655433221 1246788898887889999985544421     1 2446667776 6777777776553

>3qsz_A STAR-related lipid transfer protein; structural genomics, PSI-biology; 2.39A {Xanthomonas axonopodis PV}

Probab=98.60  E-value=4.9e-06  Score=63.84  Aligned_cols=141  Identities=13%  Similarity=0.160  Sum_probs=83.9

Q ss_pred             eEEEEEEeCCCHHHHHHHHhccCCcccccccceeEEEecCCCCCCceEEEEeee-ecCCCCCCCCCcCccceEEEEEEEE
Q 030202           18 GRACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAGF-KTPVDNKDDDHEQSVNWTKQKLLAI   96 (181)
Q Consensus        18 ~~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~G~~~~vGsvR~~~~~-~~~~~g~~G~~~~~~~~~~Erl~~~   96 (181)
                      =+++.+| ++|++++++++.|.+..++|.|.+..+.+++. .+.. .+-..... ..|..+        ...+.-+-...
T Consensus        29 ~k~~~~v-~~s~~~v~~~l~D~~~~~~W~~~~~~~~vle~-~~~~-~i~y~~~~~p~p~~~--------RD~v~~~~~~~   97 (189)
T 3qsz_A           29 FRGEVRL-KAAADDVVKVLRDANAFRQWMPDVAASELLKA-TDTE-QYHYLDNSAPWPVSN--------RDGVYHFTYEK   97 (189)
T ss_dssp             EEEEEEE-SSCHHHHHHHHHCGGGGGGTSTTEEEEEEEEE-CSSE-EEEEEEECCSSSCCC--------EEEEEEEEEEE
T ss_pred             EEEEEEE-ECCHHHHHHHHHhHHHhhhHHHhcCEEEEEee-cCCc-eEEEEEeecCCCcCC--------cceEEEEEEEE
Confidence            3456778 99999999999999999999999999988764 2221 22222221 011111        11333333333


Q ss_pred             ecCC-CeEEEEEeeccc-------ceeeEEEEEEEEEcCC-ceEEEEEEEEeeCCCCCHHHH-HHHHHHHHHHHHHHHHH
Q 030202           97 NAEE-MTLTYSIVDGNV-------GFYGYVSTLTVAPKEN-GCYIEWKYEVEPVKGWRLEDL-DCFISSGLQVMARRMKE  166 (181)
Q Consensus        97 D~~~-~~~~y~v~~g~~-------p~~~~~~t~~v~p~~~-gT~v~W~~~~~p~~~~~~~~~-~~~~~~gl~~l~~~le~  166 (181)
                      ++++ ..+.++......       ....+.+.+.++| ++ +|+|+|...++|. |..+.-+ ..++..++-.+.+.|++
T Consensus        98 ~~~g~~~i~~~~~~~~~P~~~~~VR~~~~~~~~~i~p-~~~~t~vt~~~~~dp~-G~iP~~lvn~~~~~~~~~~l~~L~k  175 (189)
T 3qsz_A           98 AGDGAITVRVEAVPDYLPLRKGKVRIPRAKGQWTLVP-DADGVDVTYQMHASPG-GSIPSWLANQTVVETPFGTLKALRS  175 (189)
T ss_dssp             CTTSCEEEEEEECTTSSCCCTTSEECCCEEEEEEEEE-CSSSEEEEEEEEECSC-SSSCHHHHHHTTTHHHHHHHHHHHH
T ss_pred             CCCCeEEEEEEcCCCccCCCCCeEEeeEeeEEEEEEE-CCCeEEEEEEEEeCCC-CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            4332 223343321111       1457788999999 76 5999999999997 4444444 33345555555566666


Q ss_pred             HHhhh
Q 030202          167 ALQAY  171 (181)
Q Consensus       167 ~~~~~  171 (181)
                      +++.+
T Consensus       176 ~~~~~  180 (189)
T 3qsz_A          176 HLRQA  180 (189)
T ss_dssp             HHTC-
T ss_pred             Hhhhc
Confidence            65554

>3ni8_A PFC0360W protein; heat shock, malaria, ATPase, structural genomics consortium, unknown function; 2.50A {Plasmodium falciparum}

Probab=98.58  E-value=6.8e-07  Score=67.58  Aligned_cols=129  Identities=11%  Similarity=0.009  Sum_probs=78.1

Q ss_pred             eEEEEEEeCCCHHHHHHHHhccCCcccccccceeEEEecCCCCCCc-eEEEEeeeecCCCCCCCCCcCccceEEEEEEEE
Q 030202           18 GRACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPG-CVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLAI   96 (181)
Q Consensus        18 ~~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~G~~~~vG-svR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~~   96 (181)
                      =.++++| +||+++||+++.|-..+.+|++. ..+.. +-   .+| ..+..       .   |       .+.=+++++
T Consensus        21 i~~~r~~-~ap~e~Vw~A~Tdpe~l~~W~~g-~~~~~-d~---~~GG~~~~~-------~---G-------~~~g~v~ev   77 (158)
T 3ni8_A           21 FEITEEY-YVPPEVLFNAFTDAYTLTRLSRG-SLAEV-DL---KVGGKFSLF-------S---G-------SILGEFTEI   77 (158)
T ss_dssp             EEEEEEE-SSCHHHHHHHHHCHHHHHHHTTT-SCCEE-CC---STTCEEEET-------T---T-------TEEEEEEEE
T ss_pred             EEEEEEE-CCCHHHHHHHhcCHHHHHhhcCC-CccEE-Ec---cCCCEEEEe-------c---C-------CEEEEEEEE
Confidence            3567788 99999999999999999999973 12222 21   233 33322       1   2       345678889


Q ss_pred             ecCCCeEEEEEeecccc-eeeEEEEEEEEEc-CCceEEEEEEEEeeCCC-CCHHHHHHHHHHHHHH-HHHHHHHHHhh
Q 030202           97 NAEEMTLTYSIVDGNVG-FYGYVSTLTVAPK-ENGCYIEWKYEVEPVKG-WRLEDLDCFISSGLQV-MARRMKEALQA  170 (181)
Q Consensus        97 D~~~~~~~y~v~~g~~p-~~~~~~t~~v~p~-~~gT~v~W~~~~~p~~~-~~~~~~~~~~~~gl~~-l~~~le~~~~~  170 (181)
                      +| ++++.|+-...+.+ -.....+++|++. +++|+|+.+..--|... ...+........|-+. +...|++++..
T Consensus        78 ~p-~~rlv~tw~~~~~~~~~~s~vt~~l~~~~~~~T~ltl~~~g~~~~~~~~~~~~~~~~~~GW~~~~L~~Lk~~Le~  154 (158)
T 3ni8_A           78 TK-PHKIVEKWKFRDWNECDYSTVTVEFISVKENHTKLKLTHNNIPASNKYNEGGVLERCKNGWTQNFLHNIEVILGY  154 (158)
T ss_dssp             ET-TTEEEEEEEETTSCSSCCEEEEEEEEEEETTEEEEEEEEECCCSSCTTCCCCHHHHHHHHHHHTHHHHHHHTSCC
T ss_pred             eC-CcEEEEEEEecCCCCCCcEEEEEEEEecCCCCEEEEEEEEccCchhhhccchhHHHHHhChhHHHHHHHHHHhCc
Confidence            88 56777654322211 1124678999995 67899998866444321 1111122335666666 57777776643

>4fpw_A CALU16; structural genomics, PSI-biology, northeast structural genom consortium, NESG, unknown function; 2.50A {Micromonospora echinospora} PDB: 2luz_A

Probab=98.57  E-value=3.5e-07  Score=70.88  Aligned_cols=116  Identities=15%  Similarity=0.197  Sum_probs=75.7

Q ss_pred             EEEEEEeCCCHHHHHHHHhccCCcccccccceeEEEecCCCCCCceEEEEeeeecCCCCCCCCCcCccceEEEEEEEEec
Q 030202           19 RACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLAINA   98 (181)
Q Consensus        19 ~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~G~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~~D~   98 (181)
                      .++++| +||+++||+++.|-..+.+|++..      +. +-.+|..-.+.+   +              ..-+++++++
T Consensus        24 ~~~r~i-~Appe~Vw~alTdpe~l~~W~~p~------~~-d~~~Gg~~~~~~---~--------------~~g~v~e~~p   78 (181)
T 4fpw_A           24 IIRQRY-DAPVDEVWSACTDPNRINRWFIEP------KG-DLREGGNFALQG---N--------------ASGDILRCEP   78 (181)
T ss_dssp             EEEEEE-SSCHHHHHHHHHCHHHHHHHSCCE------ES-CCSTTCEEEESS---S--------------CEEECCEEET
T ss_pred             EEEEEE-CCCHHHHHHHHcChHHHhhccCCC------cc-CCCCCCEEEEEe---c--------------CCEEEEEEcC
Confidence            567888 999999999999999999998642      11 123443322221   0              1235788887


Q ss_pred             CCCeEEEEEeecccceeeEEEEEEEEEcCCceEEEEEEEEeeCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 030202           99 EEMTLTYSIVDGNVGFYGYVSTLTVAPKENGCYIEWKYEVEPVKGWRLEDLDCFISSGLQVMARRMKEAL  168 (181)
Q Consensus        99 ~~~~~~y~v~~g~~p~~~~~~t~~v~p~~~gT~v~W~~~~~p~~~~~~~~~~~~~~~gl~~l~~~le~~~  168 (181)
                       +++|.|+...++.+  ....+++|+|.++||+|+.+....+.     +.. ..+..|...+...|++++
T Consensus        79 -p~rl~~tw~~~~~~--~s~vt~~l~~~~~gT~Ltl~~~~~~~-----e~~-~~~~~GW~~~L~~L~~~L  139 (181)
T 4fpw_A           79 -PRRLTISWVYEGKP--DSEVELRLSEEGDGTLLELEHATTSE-----QML-VEVGVGWEMALDFLGMFI  139 (181)
T ss_dssp             -TTEEEEEEBCTTSC--CEEEEEEEEEETTEEEEEEEEEESCH-----HHH-HHHHHHHHHHHHHHHHHC
T ss_pred             -CcEEEEEEEcCCCC--cEEEEEEEEECCCcEEEEEEEEcCCH-----HHH-HHHHHhHHHHHHHHHHHh
Confidence             67888887644333  34678999998888999998766431     222 334555555555555554

>2luz_A CALU16; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Micromonospora echinospora}

Probab=98.45  E-value=4.2e-06  Score=65.44  Aligned_cols=116  Identities=14%  Similarity=0.165  Sum_probs=73.9

Q ss_pred             EEEEEeCCCHHHHHHHHhccCCcccccccceeEEEecCCCCCCceEEEEeeeecCCCCCCCCCcCccceEEEEEEEEecC
Q 030202           20 ACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLAINAE   99 (181)
Q Consensus        20 v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~G~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~~D~~   99 (181)
                      ++.++ +||+++||+++.|-..+.+|++.+   +. +   -.+|..-.+.+                 ...-+++++++ 
T Consensus        36 i~R~f-~Ap~e~VW~AlTdpe~l~~W~~~~---~~-d---~r~GG~~~~~~-----------------~~~g~v~ev~p-   89 (192)
T 2luz_A           36 IRQRY-DAPVDEVWSACTDPNRINRWFIEP---KG-D---LREGGNFALQG-----------------NASGDILRCEP-   89 (192)
T ss_dssp             EEEEE-SSCHHHHHHHHHCHHHHTTTSCCE---EE-C---CSTTSEEEETT-----------------SEEEEEEEEET-
T ss_pred             EEEEe-CCCHHHHHHHHcCHHHHheeeCCC---cc-c---CccCcEEEeec-----------------cccceEEEEec-
Confidence            56778 999999999999999999999642   21 1   12333222221                 13346888988 


Q ss_pred             CCeEEEEEeecccceeeEEEEEEEEEcCCceEEEEEEEEeeCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 030202          100 EMTLTYSIVDGNVGFYGYVSTLTVAPKENGCYIEWKYEVEPVKGWRLEDLDCFISSGLQVMARRMKEALQ  169 (181)
Q Consensus       100 ~~~~~y~v~~g~~p~~~~~~t~~v~p~~~gT~v~W~~~~~p~~~~~~~~~~~~~~~gl~~l~~~le~~~~  169 (181)
                      +++|.|+-.....+  ....+++|+|.++||+++.+-...+     .+.. ..+..|-+.+...|+++|.
T Consensus        90 p~rL~~tw~~~~~~--~~~vt~~L~~~g~gT~Ltl~h~~~~-----~~~~-~~~~~GW~~~Ld~L~~~L~  151 (192)
T 2luz_A           90 PRRLTISWVYEGKP--DSEVELRLSEEGDGTLLELEHATTS-----EQML-VEVGVGWEMALDFLGMFIR  151 (192)
T ss_dssp             TTEEEEEEEESSSC--EEEEEEEEEEETTEEEEEEEEEESC-----HHHH-HHHHHHHHHHHHHHHHHHT
T ss_pred             CeeEEEEEeecCCC--CceEEEEEEEcCCcEEEEEEEECCC-----HHHH-HHHhccHHHHHHHHHHHhC
Confidence            67888875433222  2356899999999999988765433     2222 2244555555666666653

>1zxf_A CALC; SELF-sacrificing resistance protein, structural genomics, PSI, protein structure initiative; NMR {Micromonospora echinospora} SCOP: d.129.3.5 PDB: 2gkc_A* 2gkd_A 2l65_A*

Probab=98.42  E-value=2.6e-06  Score=63.82  Aligned_cols=129  Identities=11%  Similarity=0.100  Sum_probs=71.8

Q ss_pred             EEEEEEeCCCHHHHHHHHhccCCcccccc-cc------eeEEEecCCCCCCceEEEEeeeecCCCCCCCCCcCccceEEE
Q 030202           19 RACEELTGVKAEQIWAFLEDFFGLDKWFP-TL------TTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQ   91 (181)
Q Consensus        19 ~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P-~v------~~~~~~~G~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~E   91 (181)
                      .++++| +||+++||+++.|  .+.+|++ ..      ..+...  ..|  |.. ....   | +   |  . .  ...=
T Consensus         7 ~~~r~~-~Ap~e~Vw~A~Td--~l~~W~~p~~~~~~~~~~~~~d--r~G--G~~-~~~~---~-~---G--~-~--~~~g   66 (155)
T 1zxf_A            7 RHSVTV-KADRKTAFKTFLE--GFPEWWPNNFRTTKVGAPLGVD--KKG--GRW-YEID---E-Q---G--E-E--HTFG   66 (155)
T ss_dssp             EEEEEE-SSHHHHHHHHHTT--CSSSSSSGGGSTTTTCSSCEEE--TTT--TEE-ECCC---T-T---T--S-C--CCCE
T ss_pred             EEEEEE-eCCHHHHHHHHHh--hHHhhcCCCccccCCCceEEEE--CCC--CEE-EEEC---C-C---C--C-e--EeEE
Confidence            467888 9999999999998  4888884 31      123332  222  233 2221   2 2   3  1 1  1124


Q ss_pred             EEEEEecCCCeEEEEEeecc----cceeeEEEEEEEEEcCCc-eEEEEEEEEeeCCCC-CHHHHHHHHHHHHHHHHHHHH
Q 030202           92 KLLAINAEEMTLTYSIVDGN----VGFYGYVSTLTVAPKENG-CYIEWKYEVEPVKGW-RLEDLDCFISSGLQVMARRMK  165 (181)
Q Consensus        92 rl~~~D~~~~~~~y~v~~g~----~p~~~~~~t~~v~p~~~g-T~v~W~~~~~p~~~~-~~~~~~~~~~~gl~~l~~~le  165 (181)
                      ++++++| +++|+|+-....    .|-.....+++|++.++| |+++.+-..-+..+. ....+...+..|...+...|+
T Consensus        67 ~v~ev~p-p~rl~~tw~~~~~~~~~~~~~s~vt~~l~~~~~g~T~ltl~~~~~~~~~~~~~~~~~~~~~~GW~~~l~~L~  145 (155)
T 1zxf_A           67 LIRKVDE-PDTLVIGWRLNGFGRIDPDNSSEFTVTFVADGQKKTRVDVEHTHFDRMGTKHAKRVRNGMDKGWPTILQSFQ  145 (155)
T ss_dssp             EEEEEET-TTEEEEECCCSSSSSCCCSSCCCEEEEEEEETTTEEEEEEEECSSTTSCHHHHHHHHHHHTTTHHHHHHHHH
T ss_pred             EEEEECC-CCEEEEEEecCCCCCCCCCCcEEEEEEEEECCCCcEEEEEEEecccccccchhHHHHHHHHhhHHHHHHHHH
Confidence            6888988 678888743221    121234668999999887 999877553221111 112223233345555555555


Q ss_pred             HHH
Q 030202          166 EAL  168 (181)
Q Consensus       166 ~~~  168 (181)
                      +++
T Consensus       146 ~~l  148 (155)
T 1zxf_A          146 DKI  148 (155)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            554

>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}

Probab=98.40  E-value=3.4e-06  Score=74.46  Aligned_cols=128  Identities=10%  Similarity=0.051  Sum_probs=91.4

Q ss_pred             EEEEEeCCCHHHHHHHHhccCCcccccccceeEEEecC-CCCCCceEEEEeeeecCCCCCCCCCcCccceEEEEE--EEE
Q 030202           20 ACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQG-ISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKL--LAI   96 (181)
Q Consensus        20 v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~G-~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl--~~~   96 (181)
                      .+..| +||+++||+.+++.+++++|.|.....+++.+ ++-.+|++- +.+   |  +  |  .    ...-++  +++
T Consensus         5 ~~~~i-~~p~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~G~~~-~~~---~--~--~--~----~w~~~~~~t~~   69 (516)
T 3oh8_A            5 TSHFI-PFPREMVWDWHTRKGAVARLTPPFIPLNPITQAERLADGTTI-FSL---P--A--G--L----KWVARHDLSGF   69 (516)
T ss_dssp             EEEEE-SSCHHHHHHHHHSTTHHHHHSCTTSSCEECSCCSCSSSCEEE-EEC---S--T--T--C----EEEEEECGGGC
T ss_pred             EEEEc-cCCHHHHHHHhcCcchHHHhCCCCCceEEecCCCCCcCCeEE-Eec---C--C--C--c----EEEEEEccccc
Confidence            46778 99999999999999999999997777776642 233577655 553   3  2  2  1    445567  888


Q ss_pred             ecCCCeEEEEEeecccc-eeeEEEEEEEEEcCCceEEEEEEEEeeCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 030202           97 NAEEMTLTYSIVDGNVG-FYGYVSTLTVAPKENGCYIEWKYEVEPVKGWRLEDLDCFISSGLQVMARRMKEA  167 (181)
Q Consensus        97 D~~~~~~~y~v~~g~~p-~~~~~~t~~v~p~~~gT~v~W~~~~~p~~~~~~~~~~~~~~~gl~~l~~~le~~  167 (181)
                      ++ .+.|..+...|+++ +..+..+..|.+.++||+++.+++|...    ...+..++..--..+.+.++..
T Consensus        70 ~~-~~~F~d~~~~gp~~~~~~w~h~h~f~~~~~gt~~~d~~~~~~p----~~~L~~~f~~R~~~l~~~l~~~  136 (516)
T 3oh8_A           70 LN-GSRFTDVCLTAPVKALANWRHVHNFVDQDGGTLITDSVSTRLP----ASTLTGMFAYRQTQLIEDLKFL  136 (516)
T ss_dssp             BT-TTEEEEECCSCSSGGGSSCEEEEEEEEETTEEEEEEEEECSSC----GGGTHHHHHHHHHHHHHHHHHH
T ss_pred             cC-CCeEEEEeccCcccceeeeEEEEEEEEcCCCcEEEEEEEeeCc----HHHHHHHHHHHHHHHHHHHHHh
Confidence            87 68999999988755 6778888899999889999999999844    2233333333334444444443

>1ln1_A PC-TP, phosphatidylcholine transfer protein; start domain, lipid binding protein; HET: DLP; 2.40A {Homo sapiens} SCOP: d.129.3.2 PDB: 1ln2_A* 1ln3_A*

Probab=98.03  E-value=0.00045  Score=53.56  Aligned_cols=140  Identities=15%  Similarity=0.146  Sum_probs=85.4

Q ss_pred             EEEEEEeC-CCHHHHHHHHhccCCcccccccceeEEEecCCCCCCceEEEEeee-ecCCCCCCCCCcCccceEEEE-EEE
Q 030202           19 RACEELTG-VKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAGF-KTPVDNKDDDHEQSVNWTKQK-LLA   95 (181)
Q Consensus        19 ~v~~~I~~-Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~G~~~~vGsvR~~~~~-~~~~~g~~G~~~~~~~~~~Er-l~~   95 (181)
                      +++.+| + +|+++|++++.|....++|.|.+..+++++- ++  ..+-..... ..|...        ...+..+ ...
T Consensus        55 k~~~~i-~~~~~~~v~~~l~d~~~r~~Wd~~~~~~~vle~-~~--~~i~~~~~~~p~p~~~--------RD~v~~~~~~~  122 (214)
T 1ln1_A           55 KVFGVL-EDCSPTLLADIYMDSDYRKQWDQYVKELYEQEC-NG--ETVVYWEVKYPFPMSN--------RDYVYLRQRRD  122 (214)
T ss_dssp             EEEEEE-TTSCHHHHHHHHHCHHHHHHHCTTEEEEEEEEE-TT--EEEEEEEECCCTTSCC--------EEEEEEEEEEE
T ss_pred             EEEEEE-CCCCHHHHHHHHcCHHHHHHHHHHHhhEEEecc-CC--CEEEEEEEEcCCCCCC--------ceEEEEEEEEe
Confidence            566777 6 9999999999999888999999999887753 22  233333321 112110        0123222 223


Q ss_pred             EecCCCeE---EEEEeecc-cc-------eeeEEEEEEEEEcCC-ceEEEEEEEEeeCCCCCHHHH-HHHHHHHHHHHHH
Q 030202           96 INAEEMTL---TYSIVDGN-VG-------FYGYVSTLTVAPKEN-GCYIEWKYEVEPVKGWRLEDL-DCFISSGLQVMAR  162 (181)
Q Consensus        96 ~D~~~~~~---~y~v~~g~-~p-------~~~~~~t~~v~p~~~-gT~v~W~~~~~p~~~~~~~~~-~~~~~~gl~~l~~  162 (181)
                      +++.+..+   ...-++.+ .|       ...+.+.+.++|.++ +|+|++...++|. |..+.-+ ..+...++..+.+
T Consensus       123 ~~~~g~~~~~i~~~Sv~~p~~P~~~~~VR~~~~~~~~~i~p~~~~~t~v~~~~~~Dp~-G~iP~~l~n~~~~~~~~~~l~  201 (214)
T 1ln1_A          123 LDMEGRKIHVILARSTSMPQLGERSGVIRVKQYKQSLAIESDGKKGSKVFMYYFDNPG-GQIPSWLINWAAKNGVPNFLK  201 (214)
T ss_dssp             ECSTTCCEEEEEEEECCBTTBCCCTTSEEECCEEEEEEEEECSSSSEEEEEEEEECCS-SCCCHHHHHHHHHTHHHHHHH
T ss_pred             cccCCCeEEEEEEecccCCCCCCCCCcEEEEEEEEEEEEecCCCCceEEEEEEEECCC-CcccHHHHHHHHHHHhHHHHH
Confidence            44333222   12222211 12       446788899999875 5999999999998 4455444 3446666666777


Q ss_pred             HHHHHHhhh
Q 030202          163 RMKEALQAY  171 (181)
Q Consensus       163 ~le~~~~~~  171 (181)
                      .|++++..+
T Consensus       202 ~l~k~~~~y  210 (214)
T 1ln1_A          202 DMARACQNY  210 (214)
T ss_dssp             HHHHHHHTC
T ss_pred             HHHHHHHhc
Confidence            777776543

>1jss_A Stard4, cholesterol-regulated start protein 4; start domain, structural genomics, PSI, protein structure initiative; 2.20A {Mus musculus} SCOP: d.129.3.2

Probab=97.47  E-value=0.0096  Score=46.68  Aligned_cols=143  Identities=8%  Similarity=-0.003  Sum_probs=80.7

Q ss_pred             EEEEEEeCCCHHHHHHHHhccCCcccccccceeEEEecCCCCCCceEEEEeeeecC--CCCCCCCCcCccceEEEEEEEE
Q 030202           19 RACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAGFKTP--VDNKDDDHEQSVNWTKQKLLAI   96 (181)
Q Consensus        19 ~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~G~~~~vGsvR~~~~~~~~--~~g~~G~~~~~~~~~~Erl~~~   96 (181)
                      ++..+| ++|+++|++++.|...-++|.+.+..+.+++--++.---++...-...+  ..+        ...+.-|-..-
T Consensus        70 k~~~~v-~~~~~~v~~~l~d~~~r~~Wd~~~~~~~vle~id~~~~I~y~~~~~~~~~~v~~--------RDfv~~r~~~~  140 (224)
T 1jss_A           70 KAQGVM-DDVVNNVIDHIRPGPWRLDWDRLMTSLDVLEHFEENCCVMRYTTAGQLLNIISP--------REFVDFSYTVG  140 (224)
T ss_dssp             EEEEEE-SSCHHHHHHHHSSSTTHHHHCSSEEEEEEEEECSTTEEEEEEEECCBTTTTBCC--------EEEEEEEEEEE
T ss_pred             EEEEEE-eCCHHHHHHHHhCcccccccccceeeEEEEEEcCCCeEEEEEEcccccCCCCCC--------CeEEEEEEEEE
Confidence            567778 9999999999999777799999999988875222111112222211000  111        11333332223


Q ss_pred             ecCCCeEEEEEeeccc------ceeeEEEEEEEEEcCC---ceEEEEEEEEeeCCCCCHHHHH-HHHHHHHHHHHHHHHH
Q 030202           97 NAEEMTLTYSIVDGNV------GFYGYVSTLTVAPKEN---GCYIEWKYEVEPVKGWRLEDLD-CFISSGLQVMARRMKE  166 (181)
Q Consensus        97 D~~~~~~~y~v~~g~~------p~~~~~~t~~v~p~~~---gT~v~W~~~~~p~~~~~~~~~~-~~~~~gl~~l~~~le~  166 (181)
                      ++....+...-++.+.      ....+.+.+.+.|.++   +|+|+|.+..+|. |..+..+. .++..++-...+.|.+
T Consensus       141 ~~~~~vi~~~Sv~hp~~~~g~VR~~~~~~g~~i~p~~~~~~~t~vt~~~~~Dp~-G~iP~~lvn~~~~~~~~~~~~~Lr~  219 (224)
T 1jss_A          141 YEEGLLSCGVSVEWSETRPEFVRGYNHPCGWFCVPLKDSPSQSLLTGYIQTDLR-GMIPQSAVDTAMASTLANFYSDLRK  219 (224)
T ss_dssp             ETTEEEEEEEECCCCCCCTTSEECEECSEEEEEEEETTEEEEEEEEEEECEECC-SCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCeEEEEEeeeecCCCCCCCEEEEecccEEEEEEcCCCCCceEEEEEEEeCCC-CCccHHHHHHHHHHhHHHHHHHHHH
Confidence            3333222222222211      2234556788999753   5999999999997 44454443 3455566666667776


Q ss_pred             HHhhh
Q 030202          167 ALQAY  171 (181)
Q Consensus       167 ~~~~~  171 (181)
                      ++.+|
T Consensus       220 ~~~~~  224 (224)
T 1jss_A          220 GLRKA  224 (224)
T ss_dssp             HTC--
T ss_pred             HHhhC
Confidence            65443

>3p0l_A Steroidogenic acute regulatory protein, mitochond; structural genomics consortium, SGC, start domain, cholester transport, cholesterol; 3.40A {Homo sapiens}

Probab=97.33  E-value=0.013  Score=45.75  Aligned_cols=141  Identities=13%  Similarity=0.155  Sum_probs=78.4

Q ss_pred             EEEEEEeCCCHHHHHHHH-hccCCcccccccceeEEEecCCCCCCceEEEEeee--ecCCCCCCCCCcCccceEEEEEEE
Q 030202           19 RACEELTGVKAEQIWAFL-EDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAGF--KTPVDNKDDDHEQSVNWTKQKLLA   95 (181)
Q Consensus        19 ~v~~~I~~Ap~e~VW~~l-~Df~~~~~w~P~v~~~~~~~G~~~~vGsvR~~~~~--~~~~~g~~G~~~~~~~~~~Erl~~   95 (181)
                      ++..+| ++|+++|+++| .|....++|.+.+..+++++--++..--++.....  ..|..+        ...+.-|...
T Consensus        58 k~~~~v-~~~~~~v~~~l~~d~~~r~~Wd~~~~~~~vle~~~~~t~I~y~~~~~~~~~~v~~--------RDfv~~r~~~  128 (221)
T 3p0l_A           58 RLEVVV-DQPMERLYEELVERMEAMGEWNPNVKEIKVLQKIGKDTFITHELAAEAAGNLVGP--------RDFVSVRCAK  128 (221)
T ss_dssp             EEEEEE-SSCHHHHHHHHTTTGGGTTTSCTTCSEEEEEEECSSSEEEEEEEECC---CCSCC--------EEEEEEEEEE
T ss_pred             EEEEEE-cCCHHHHHHHHHhccchhhhcCcchheEEEEEecCCCeEEEEEeeccccCCccCC--------ceEEEEEEEE
Confidence            556778 99999999987 68888999999999998765222111112222110  012111        1133333333


Q ss_pred             EecCCCeEEEEEeecc-cc-------eeeEEEEEEEEEcCC---ceEEEEEEEEeeCCCCCHHHHH-HHHHHHHHHHHHH
Q 030202           96 INAEEMTLTYSIVDGN-VG-------FYGYVSTLTVAPKEN---GCYIEWKYEVEPVKGWRLEDLD-CFISSGLQVMARR  163 (181)
Q Consensus        96 ~D~~~~~~~y~v~~g~-~p-------~~~~~~t~~v~p~~~---gT~v~W~~~~~p~~~~~~~~~~-~~~~~gl~~l~~~  163 (181)
                      .++....+...-++.+ .|       ...+.+-+.+.|.++   +|+|+|....+|. |..+.-+. ..+..++-...+.
T Consensus       129 ~~~~~~vi~~~Sv~~~~~P~~~g~VR~~~~~~g~~i~p~~~~~~~t~vt~~~~~Dp~-G~iP~~lvn~~~~~~~~~~~~~  207 (221)
T 3p0l_A          129 RRGSTCVLAGMATDFGNMPEQKGVIRAEHGPTCMVLHPLAGSPSKTKLTWLLSIDLK-GWLPKSIINQVLSQTQVDFANH  207 (221)
T ss_dssp             ECSSCEEECCEECCCTTSCCCTTSEECEECSCEEEEEEETTEEEEEEEEEEECEECC-SSCCHHHHHHHHHHHHHHHHHH
T ss_pred             EcCCeEEEEEEeccCCCCCCCCCeEEEeccceEEEEEECCCCCCcEEEEEEEEecCC-CCCCHHHHHHHHHHHHHHHHHH
Confidence            3332222222222222 12       224456788899874   4999999999997 44555553 3334455555556


Q ss_pred             HHHHHh
Q 030202          164 MKEALQ  169 (181)
Q Consensus       164 le~~~~  169 (181)
                      |++++.
T Consensus       208 Lr~~~~  213 (221)
T 3p0l_A          208 LRKRLE  213 (221)
T ss_dssp             HHHHTC
T ss_pred             HHHHHh
Confidence            666554

>2r55_A STAR-related lipid transfer protein 5; alpha and beta protein, cholesterol binding, structural GENO structural genomics consortium, SGC; 2.50A {Homo sapiens}

Probab=97.25  E-value=0.035  Score=43.38  Aligned_cols=143  Identities=13%  Similarity=0.125  Sum_probs=80.7

Q ss_pred             eEEEEEEeCCCHHHHHHHH--hccCCcccccccceeEEEecCCCCCCceE-EEEeeeec--CCCCCCCCCcCccceEEEE
Q 030202           18 GRACEELTGVKAEQIWAFL--EDFFGLDKWFPTLTTCIPIQGISGQPGCV-RFCAGFKT--PVDNKDDDHEQSVNWTKQK   92 (181)
Q Consensus        18 ~~v~~~I~~Ap~e~VW~~l--~Df~~~~~w~P~v~~~~~~~G~~~~vGsv-R~~~~~~~--~~~g~~G~~~~~~~~~~Er   92 (181)
                      =+++.+| ++|+++|++++  .|.....+|.+.+..+.+++--++. ..+ +.+.....  |...        ...+.-|
T Consensus        69 ~k~~~~v-~~~~~~v~~~l~~~d~~~r~~Wd~~~~~~~vle~i~~~-~~i~~~~~~~~~~~~v~~--------RDfv~~r  138 (231)
T 2r55_A           69 YRGEGIV-YGTLEEVWDCVKPAVGGLRVKWDENVTGFEIIQSITDT-LCVSRTSTPSAAMKLISP--------RDFVDLV  138 (231)
T ss_dssp             EEEEEEE-SSCHHHHHHHHCC--CCSHHHHCTTCSEEEEEEECSSS-EEEEEEECCCBTTTTBCC--------EEEEEEE
T ss_pred             EEEEEEE-CCCHHHHHHHHHhhCcchhhhhccccceeEEEEEcCCC-EEEEEEEeccccCCccCC--------CeEEEEE
Confidence            3567778 99999999999  8889889999999888876522211 222 22221000  1111        1133333


Q ss_pred             EEEEecCC-CeEEEEEeecc-cc-------eeeEEEEEEEEEcC--C-ceEEEEEEEEeeCCCCCHHHH-HHHHHHHHHH
Q 030202           93 LLAINAEE-MTLTYSIVDGN-VG-------FYGYVSTLTVAPKE--N-GCYIEWKYEVEPVKGWRLEDL-DCFISSGLQV  159 (181)
Q Consensus        93 l~~~D~~~-~~~~y~v~~g~-~p-------~~~~~~t~~v~p~~--~-gT~v~W~~~~~p~~~~~~~~~-~~~~~~gl~~  159 (181)
                      -...++.+ ..+...-++.+ .|       ...+.+-+.+.|.+  + +|+|+|....+|.+ ..+..+ ..++..++-.
T Consensus       139 ~~~~~~~g~~vi~~~Sv~~~~~P~~~~~VR~~~~~~g~~i~p~~~~~~~t~vt~~~~~Dp~G-~iP~~lvn~~~~~~~~~  217 (231)
T 2r55_A          139 LVKRYEDGTISSNATHVEHPLCPPKPGFVRGFNHPCGCFCEPLPGEPTKTNLVTFFHTDLSG-YLPQNVVDSFFPRSMTR  217 (231)
T ss_dssp             EEEECTTSCEEEEEEECCCTTSCCCTTCEEEEECSEEEEEEECC--CCCEEEEEEECEECCS-SCCHHHHHHHHHHHHHH
T ss_pred             EEEEcCCCEEEEEEEeccCCCCCCCCCCEEEEEEeeEEEEEEeCCCCCcEEEEEEEEeCCCC-CccHHHHHHHHhHhHHH
Confidence            33333332 22223323322 12       22344567788864  3 59999999999974 444444 3445556666


Q ss_pred             HHHHHHHHHhhh
Q 030202          160 MARRMKEALQAY  171 (181)
Q Consensus       160 l~~~le~~~~~~  171 (181)
                      ..+.|++++.++
T Consensus       218 ~~~~Lr~~~~~~  229 (231)
T 2r55_A          218 FYANLQKAVKQF  229 (231)
T ss_dssp             HHHHHHHHHHGG
T ss_pred             HHHHHHHHHHHh
Confidence            777777777655

>1em2_A MLN64 protein; beta barrel, lipid binding protein; HET: TAR; 2.20A {Homo sapiens} SCOP: d.129.3.2

Probab=97.17  E-value=0.023  Score=44.51  Aligned_cols=142  Identities=10%  Similarity=0.033  Sum_probs=79.9

Q ss_pred             EEEEEEeCCCHHHHH-HHHhccCCcccccccceeEEEecCCCCCCceEEEEeee--ecCCCCCCCCCcCccceEEEEEEE
Q 030202           19 RACEELTGVKAEQIW-AFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAGF--KTPVDNKDDDHEQSVNWTKQKLLA   95 (181)
Q Consensus        19 ~v~~~I~~Ap~e~VW-~~l~Df~~~~~w~P~v~~~~~~~G~~~~vGsvR~~~~~--~~~~~g~~G~~~~~~~~~~Erl~~   95 (181)
                      ++..+| ++|+++|+ .++.|....++|.+.+..+.+++--+..---++.+...  +.|...        ...+.-|-..
T Consensus        69 k~~~~v-~~~~~~v~~~~~~d~~~r~~Wd~~~~~~~vle~~~~~t~I~~~~~~p~~~~~~~~--------RDfv~~r~~~  139 (229)
T 1em2_A           69 ILKTFL-PCPAELVYQEVILQPERMVLWNKTVTACQILQRVEDNTLISYDVSAGAAGGVVSP--------RDFVNVRRIE  139 (229)
T ss_dssp             EEEEEE-SSCHHHHHHHTTTCHHHHTTTCTTEEEEEEEEEETTTEEEEEEEECCBTTTTBCC--------EEEEEEEEEE
T ss_pred             EEEEEe-cCCHHHHHHHHHhCccchhhcccccceEEEEEecCCCeEEEEEEecCcCCCCcCC--------CeeEEEEEEE
Confidence            566778 99999999 78889998899999999988765211111112222210  011111        1133333333


Q ss_pred             EecCCCeEEEEEeecc-cc-------eeeEEEEEEEEEcC--C-ceEEEEEEEEeeCCCCCHHHH-HHHHHHHHHHHHHH
Q 030202           96 INAEEMTLTYSIVDGN-VG-------FYGYVSTLTVAPKE--N-GCYIEWKYEVEPVKGWRLEDL-DCFISSGLQVMARR  163 (181)
Q Consensus        96 ~D~~~~~~~y~v~~g~-~p-------~~~~~~t~~v~p~~--~-gT~v~W~~~~~p~~~~~~~~~-~~~~~~gl~~l~~~  163 (181)
                      .++....+...-++.+ .|       ...+.+.+.+.|.+  + +|.|+|....+|.+ ..+..+ ..++..++-.+.+.
T Consensus       140 ~~~~~~vi~~~Sv~~~~~P~~~~~VR~~~~~~g~~i~p~~~~~~~t~vt~~~~~Dp~G-~iP~~l~n~~~~~~~~~~~~~  218 (229)
T 1em2_A          140 RRRDRYLSSGIATSHSAKPPTHKYVRGENGPGGMIVLKSASNPRVCTFVWILNTDLKG-RLPRYLIHQSLAATMFEFAFH  218 (229)
T ss_dssp             ECSSEEEEEEEECCCTTSCCCTTSEECEECSEEEEEEECSSCTTCEEEEEEECEECCS-SSCHHHHHHHHHHHHHHHHHH
T ss_pred             EcCCEEEEEEecccCCCCCCCCCCEeeeecccEEEEEecCCCCCcEEEEEEEEECCCC-CCCHHHHHHHHHHHHHHHHHH
Confidence            3333333322223222 12       22445678888864  3 49999999999974 444444 34455555556666


Q ss_pred             HHHHHhh
Q 030202          164 MKEALQA  170 (181)
Q Consensus       164 le~~~~~  170 (181)
                      |.+++.+
T Consensus       219 Lr~~~~~  225 (229)
T 1em2_A          219 LRQRISE  225 (229)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            6666544

>2lio_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Bacteroides fragilis}

Probab=97.11  E-value=0.026  Score=41.37  Aligned_cols=117  Identities=13%  Similarity=0.223  Sum_probs=71.2

Q ss_pred             EEEEEeCCCH-HHHHHHHhccCCcccccccceeEEEecCCCCCCceEEEEeeeecCCCCCCCCCcCccceEEEEEEEEec
Q 030202           20 ACEELTGVKA-EQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLAINA   98 (181)
Q Consensus        20 v~~~I~~Ap~-e~VW~~l~Df~~~~~w~P~v~~~~~~~G~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~~D~   98 (181)
                      .++.| +||+ ++||++|++-.++.+|+..-  +. ..|.     ..++ ..     ++. |       ...-+|+++++
T Consensus         8 ~e~~i-~A~~~~~VW~~IStPegL~~Wfad~--v~-~~g~-----~~~F-~w-----~~~-~-------~~~~~v~~~~~   64 (136)
T 2lio_A            8 LEYLL-NATSKNILWSAISTPTGLEDWFADK--VV-SDDK-----TVTF-CW-----GKT-E-------QRQAGIVAIRA   64 (136)
T ss_dssp             EEEEE-CTTSCTHHHHGGGSHHHHTTTSSSE--EE-EETT-----EEEE-ES-----SSS-S-------EEEEEEEEEET
T ss_pred             EEEEe-cCChHHHHHHHhCChhhhhcccCCC--Cc-ccCc-----eEEE-Ee-----CCC-C-------cEeEEEEEEcC
Confidence            56778 9999 99999999999999999742  11 2231     1222 22     110 2       56888999998


Q ss_pred             CCCeEEEEEeecccceeeEEEEEEEEEcC--CceEEEEEEEEeeCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 030202           99 EEMTLTYSIVDGNVGFYGYVSTLTVAPKE--NGCYIEWKYEVEPVKGWRLEDLDCFISSGLQVMARRMKEALQ  169 (181)
Q Consensus        99 ~~~~~~y~v~~g~~p~~~~~~t~~v~p~~--~gT~v~W~~~~~p~~~~~~~~~~~~~~~gl~~l~~~le~~~~  169 (181)
                       +++++|+=....  -.++..++++...+  +++.++-+ .|...     ..... ...|=+.+..+|.+++.
T Consensus        65 -~~~i~FrW~~~~--~~~~~~e~~l~~~~~t~~~~L~vt-dFa~~-----~~~e~-~~~gW~~~l~~Lk~~lg  127 (136)
T 2lio_A           65 -YSFIRFHWLDDE--NERDYFEIKMSYNELTGDYVLEIT-DFSEA-----DEADD-LKELWDSQVSKLRRTCG  127 (136)
T ss_dssp             -TTEEEEEESSSS--SSSCEEEEEEEECTTTSCEEEEEE-EEECH-----HHHHH-HHHHHHHHHHHHHHHTS
T ss_pred             -CCEEEEEccCCC--CCceEEEEEEEecCCCCcEEEEEe-cCCCc-----cchhH-HHhhHHHHHHHHHHHhh
Confidence             678888865432  12245577887766  57877666 44421     12323 34444444456665553

>2e3n_A Lipid-transfer protein CERT; ceramide transfer, lipid transport; HET: 6CM; 1.40A {Homo sapiens} PDB: 2e3m_A* 2e3o_A* 2e3p_A* 2e3q_A* 2e3r_A* 2e3s_A 2z9y_A* 3h3q_A* 3h3r_A* 3h3s_A* 3h3t_A* 2z9z_A*

Probab=96.86  E-value=0.034  Score=44.22  Aligned_cols=36  Identities=11%  Similarity=0.281  Sum_probs=31.2

Q ss_pred             EEEEeCCCHHHHHHHHhccCCcccccccceeEEEec
Q 030202           21 CEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQ   56 (181)
Q Consensus        21 ~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~   56 (181)
                      ..+|.+++++.|++++.|++..++|.+.+..+++++
T Consensus        78 ~~~~~~~~~~~v~~~l~d~~~r~~Wd~~~~~~~vle  113 (255)
T 2e3n_A           78 THAVKGVTGHEVCNYFWNVDVRNDWETTIENFHVVE  113 (255)
T ss_dssp             EEEEETCCHHHHHHHHHCGGGHHHHCCSEEEEEEEE
T ss_pred             EEEEcCCCHHHHHHHHhCcchHhhhhhhcceeEEEE
Confidence            455536999999999999999999999999988775

>2pso_A STAR-related lipid transfer protein 13; alpha and beta protein, lipid binding, helix swapping, struc genomics, structural genomics consortium, SGC; 2.80A {Homo sapiens} SCOP: d.129.3.2

Probab=96.46  E-value=0.052  Score=43.06  Aligned_cols=136  Identities=10%  Similarity=0.086  Sum_probs=74.1

Q ss_pred             EEEEEEeCCCHHHHHH-HHhccCCcccccccceeEEEecCCCCCCceE-EEEeeeecCCCCCCCCCcCccceEEEEEEEE
Q 030202           19 RACEELTGVKAEQIWA-FLEDFFGLDKWFPTLTTCIPIQGISGQPGCV-RFCAGFKTPVDNKDDDHEQSVNWTKQKLLAI   96 (181)
Q Consensus        19 ~v~~~I~~Ap~e~VW~-~l~Df~~~~~w~P~v~~~~~~~G~~~~vGsv-R~~~~~~~~~~g~~G~~~~~~~~~~Erl~~~   96 (181)
                      +++.+| ++++++++. ++.|   .++|.+.+..+++++--+... .+ +...-...|...        ...+.-|-...
T Consensus        78 K~~~~v-~~~~~~v~~~ll~d---r~~Wd~~~~~~~vle~id~~~-~I~y~~~~~p~p~~~--------RDfv~~r~~r~  144 (237)
T 2pso_A           78 KASVEV-EAPPSVVLNRVLRE---RHLWDEDFVQWKVVETLDRQT-EIYQYVLNSMAPHPS--------RDFVVLRTWKT  144 (237)
T ss_dssp             EEEEEE-SSCHHHHHHHHHHC---GGGTCTTBCCCEEEEEEETTE-EEEEEEECCSSSCCC--------EEEEEEEEEES
T ss_pred             EEEEEE-cCChHHHHHHHHhh---hhhHHhhhceEEEEEEcCCCc-EEEEEEecCCCCcCC--------eEEEEEEEEEE
Confidence            567788 999999875 6677   689999998887765211111 12 222111112111        11333333222


Q ss_pred             --ecCCCeEEEEEeecc-cc------eeeEEEEEEEEEcCC-ceEEEEEEEEeeCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 030202           97 --NAEEMTLTYSIVDGN-VG------FYGYVSTLTVAPKEN-GCYIEWKYEVEPVKGWRLEDLDCFISSGLQVMARRMKE  166 (181)
Q Consensus        97 --D~~~~~~~y~v~~g~-~p------~~~~~~t~~v~p~~~-gT~v~W~~~~~p~~~~~~~~~~~~~~~gl~~l~~~le~  166 (181)
                        ++....+..+-++.+ .|      ...+.+.+.+.|.++ +|+|+|....+|. |..+.-+...+...+-...+.|.+
T Consensus       145 ~~~~g~~vi~~~Sv~h~~~P~~g~VR~~~~~~g~~i~P~~~~~t~vt~~~~~Dp~-G~iP~~ln~~~~~~~~~~l~~LR~  223 (237)
T 2pso_A          145 DLPKGMCTLVSLSVEHEEAQLLGGVRAVVMDSQYLIEPCGSGKSRLTHICRIDLK-GHSPEWYSKGFGHLCAAEVARIRN  223 (237)
T ss_dssp             CCGGGCEEEEEEECCCTTCCCCSSEECCEEEEEEEEEECSTTCEEEEEEEEECCS-SSCTTTTTTHHHHHHHHHHHHHHH
T ss_pred             ECCCCEEEEEEEcccCCCCCCCCcEEEEEeccEEEEEECCCCCEEEEEEEEeCCC-CCchHHHHHHHHHHHHHHHHHHHH
Confidence              333444444444432 12      335677888999875 5999999999997 444443433333333334444444


Q ss_pred             HH
Q 030202          167 AL  168 (181)
Q Consensus       167 ~~  168 (181)
                      ++
T Consensus       224 ~~  225 (237)
T 2pso_A          224 SF  225 (237)
T ss_dssp             TT
T ss_pred             HH
Confidence            43

>3fo5_A Thioesterase, adipose associated, isoform BFIT2; orthogonal bundle, consortium, lipid transport; HET: 1PE TCE; 2.00A {Homo sapiens}

Probab=96.21  E-value=0.09  Score=42.50  Aligned_cols=112  Identities=10%  Similarity=0.052  Sum_probs=67.2

Q ss_pred             EEEEEEeCCCHHHHHHHHhccCCcccccccceeEEEec--CCCCCCceEEEEeeeecCCCCCCCCCcCccceEEEEEEEE
Q 030202           19 RACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQ--GISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLAI   96 (181)
Q Consensus        19 ~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~--G~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~~   96 (181)
                      +++.+| ++|++.||++|.|....++|.+.+..+.+++  +++ ..  +..+..   |..+  +. .+..-.+.-|-...
T Consensus        91 k~~~~v-~~~~~~v~~~L~D~~~R~~WD~~~~~~~vle~id~~-~i--vY~~~~---p~~~--~~-v~~RDFV~lr~~r~  160 (258)
T 3fo5_A           91 HMEMVV-HVDAAQAFLLLSDLRQRPEWDKHYRSVELVQQVDED-DA--IYHVTS---PALG--GH-TKPQDFVILASRRK  160 (258)
T ss_dssp             EEEEEE-SSCHHHHHHHHHCGGGGGGTCTTCCEEEEEEEEETT-EE--EEEEEE---CCCT--TC-SSCEEEEEEEEEEC
T ss_pred             EEEEEE-eCCHHHHHHHHhCchhHhHhhhhccEEEEEEEcCCC-eE--EEEEec---CCcc--CC-CCCCEEEEEEEEEe
Confidence            577788 9999999999999999999999999998764  222 22  333322   1110  00 01111333333221


Q ss_pred             -ecCC--CeEEEEEeecc-cc-------eeeEEEEEEEEEcCC-ceEEEEEEEEee
Q 030202           97 -NAEE--MTLTYSIVDGN-VG-------FYGYVSTLTVAPKEN-GCYIEWKYEVEP  140 (181)
Q Consensus        97 -D~~~--~~~~y~v~~g~-~p-------~~~~~~t~~v~p~~~-gT~v~W~~~~~p  140 (181)
                       .+.+  ..+...-+..+ .|       ...+.+-+.+.|.++ +|+|+|....+|
T Consensus       161 ~~~~G~~yvi~~~SV~hp~~Pp~~g~VR~~~~~sg~~I~P~~~~~t~VtY~~q~dp  216 (258)
T 3fo5_A          161 PCDNGDPYVIALRSVTLPTHRETPEYRRGETLCSGFCLWREGDQLTKVSYYNQATP  216 (258)
T ss_dssp             CSSTTCCEEEEEEEEECTTSCCCTTSEECCCSSEEEEEEEEETTEEEEEEEESCCG
T ss_pred             ccCCCCEEEEEEEeccCCCCCCCCCCEEEEEcCcEEEEEECCCCCEEEEEEEeeCC
Confidence             2222  33443333322 22       235667889999886 499999988888

>2ffs_A Hypothetical protein PA1206; 7-stranded beta sheet, C-terminal helix, structural genomics protein structure initiative; HET: MSE; 2.50A {Pseudomonas aeruginosa} SCOP: d.129.3.7

Probab=94.84  E-value=0.88  Score=34.05  Aligned_cols=126  Identities=12%  Similarity=-0.013  Sum_probs=76.6

Q ss_pred             CCHHHHHHHH-hccCCcccccccceeEEEecCCCCCCceEEEEeeeecCCCCCCCCCcCccceEEEEEEEEecCCCeEEE
Q 030202           27 VKAEQIWAFL-EDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLAINAEEMTLTY  105 (181)
Q Consensus        27 Ap~e~VW~~l-~Df~~~~~w~P~v~~~~~~~G~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~~D~~~~~~~y  105 (181)
                      ...+++|+-| .-..+-..+.|++.+|++++..++  .-.|.+.+      +  +      ..++|+++.+ + ..++.|
T Consensus        20 LTr~QlW~GL~~kar~p~~Fvp~i~~c~Vlse~~~--~~~R~l~f------g--~------~~i~e~vtl~-~-~~~v~f   81 (157)
T 2ffs_A           20 LDRLQLWEGLVCRAREPQYFVVGLERFEILVDDGD--RLHRRLYL------P--G------LVVEDEVVLK-A-PDSAHY   81 (157)
T ss_dssp             CCHHHHHHHHHHHHHCGGGTCTTCCEEEEEEECSS--EEEEEEEE------T--T------EEEEEEEEEE-T-TTEEEE
T ss_pred             cCHHHHHHHHHHHhcChhhcccccCeEEEEecCCC--eEEEEEEE------C--C------CccceEEEEc-C-CcEEEE
Confidence            3468999854 456666778999999999864322  46788887      2  2      1688888765 3 578999


Q ss_pred             EEeecccceeeEEEEEEEEEcCCc-eEEEEEEEEeeCC-----CCCHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 030202          106 SIVDGNVGFYGYVSTLTVAPKENG-CYIEWKYEVEPVK-----GWRLEDLDCFISSGLQVMARRMKEALQAY  171 (181)
Q Consensus       106 ~v~~g~~p~~~~~~t~~v~p~~~g-T~v~W~~~~~p~~-----~~~~~~~~~~~~~gl~~l~~~le~~~~~~  171 (181)
                      .+....-+ .+..-++.+....+| =.+++.++.....     ....+..+..|+.+....-+.+.+.+..+
T Consensus        82 ~~~~t~~~-~gs~ltn~Iee~~~g~L~lrF~ye~~~p~~s~e~~~~~~~~~~ay~~ad~~Tv~~iRel~~~g  152 (157)
T 2ffs_A           82 SIKPSAEV-AGGSLDMTIEEPEPGSLFVRFAYCTRYLQPLGDELPYDAFVKQAYIAMDVETIATIRDRFGAS  152 (157)
T ss_dssp             EECCCSSS-BEEEEEEEEEEEETTEEEEEEEEEEECSCC--CCCCCBHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred             EcccccCC-CCceEEEEEeeCCCCcEEEEEEEEccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            88762111 122334555543345 4455555544221     11223346778888777777777776544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	181
d1txca1	147	d.129.3.1 (A:1-147) Plant pathogenesis-related pro	1e-12
d3cnwa1	138	d.129.3.8 (A:3-140) Uncharacterized protein XoxI {	5e-12
d1e09a_	159	d.129.3.1 (A:) Major tree pollen allergen {Sweet c	4e-11
d1fm4a_	159	d.129.3.1 (A:) Major tree pollen allergen {Europea	3e-08
d1icxa_	155	d.129.3.1 (A:) Plant pathogenesis-related protein	1e-06
d1xdfa1	157	d.129.3.1 (A:1-157) Plant pathogenesis-related pro	5e-06
d1vjha_	120	d.129.3.1 (A:) Hypothetical protein At1G24000 {Tha	6e-06
d2bk0a1	153	d.129.3.1 (A:2-154) Major allergen api g 1 {Celery	2e-04

>d1txca1 d.129.3.1 (A:1-147) Plant pathogenesis-related protein PR10 {Jicama (Pachyrhizus erosus), SPE-16 [TaxId: 109171]} Length = 147

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Plant pathogenesis-related protein PR10
species: Jicama (Pachyrhizus erosus), SPE-16 [TaxId: 109171]

 Score = 60.4 bits (146), Expect = 1e-12
 Identities = 23/134 (17%), Positives = 42/134 (31%), Gaps = 15/134 (11%)

Query: 22  EELTGVKAEQIW-AFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAGFKTPVDNKDD 80
           E  + V   +++ A  +D   + +        I +   +G  G ++          +K  
Sbjct: 8   ETSSSVAPAKLYKALTKDSDTIAQKIDGPIQSIELVEGNGGVGTIKKI---TANEGDK-- 62

Query: 81  DHEQSVNWTKQKLLAINAEEMTLTYSIVDGNVGFYGYVS----TLTVAPKENGCYIEWKY 136
                 ++  QK+ AI+   +   YSIV G             T  VA    G   +   
Sbjct: 63  -----TSFVLQKVDAIDEANLGYDYSIVGGTGLPESLEKLSFETKVVAGSGGGSISKVTL 117

Query: 137 EVEPVKGWRLEDLD 150
           +        L D  
Sbjct: 118 KFHTKGDAPLSDAV 131

>d3cnwa1 d.129.3.8 (A:3-140) Uncharacterized protein XoxI {Bacillus cereus [TaxId: 1396]} Length = 138

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Atu1531-like
domain: Uncharacterized protein XoxI
species: Bacillus cereus [TaxId: 1396]

 Score = 58.3 bits (140), Expect = 5e-12
 Identities = 28/142 (19%), Positives = 47/142 (33%), Gaps = 21/142 (14%)

Query: 29  AEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNW 88
            EQ+W  +  F  L  W P + +    +G       VR  A                 + 
Sbjct: 14  PEQVWQLIGGFNSLPDWLPYIPSSKLTEGG-----RVRHLAN-------------PDGDT 55

Query: 89  TKQKLLAINAEEMTLTYSIVDGNVGFYGYVSTLTVAPKENG--CYIEWKYEVEPVKGWRL 146
             ++L   N +E   TYSI++       Y+ST+ V          +EW     PV     
Sbjct: 56  IIERLEVFNDKERYYTYSIMNAPFPVTNYLSTIQVKEGTESNTSLVEWSGTFTPV-EVSD 114

Query: 147 EDLDCFISSGLQVMARRMKEAL 168
           E+             + +++A 
Sbjct: 115 EEAINLFHGIYSDGLKALQQAF 136

>d1e09a_ d.129.3.1 (A:) Major tree pollen allergen {Sweet cherry (Prunus avium), pru av 1 [TaxId: 42229]} Length = 159

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Major tree pollen allergen
species: Sweet cherry (Prunus avium), pru av 1 [TaxId: 42229]

 Score = 56.1 bits (135), Expect = 4e-11
 Identities = 24/156 (15%), Positives = 51/156 (32%), Gaps = 17/156 (10%)

Query: 22  EELTGVKAEQIW-AFLEDFFGL-DKWFPTLTTCIPIQGISGQPGCVRFCAGFKTPVDNKD 79
           E  + +   +++ AF+ D   L  K  P       I    G PG ++             
Sbjct: 8   EFTSEIPPPRLFKAFVLDADNLVPKIAPQAIKHSEILEGDGGPGTIKKI----------T 57

Query: 80  DDHEQSVNWTKQKLLAINAEEMTLTYSIVDGNVGFYGYVS----TLTVAPKENGCYIEWK 135
                   + K K+ +I+ E  + +Y++++G+            T  VA    G  I+  
Sbjct: 58  FGEGSQYGYVKHKIDSIDKENYSYSYTLIEGDALGDTLEKISYETKLVASPSGGSIIKST 117

Query: 136 YEVEPVKGWRL-EDLDCFISSGLQVMARRMKEALQA 170
                     + E+           + + ++  L+ 
Sbjct: 118 SHYHTKGNVEIKEEHVKAGKEKASNLFKLIETYLKG 153

>d1fm4a_ d.129.3.1 (A:) Major tree pollen allergen {European white birch (Betula pendula), Bet v 1-l [TaxId: 3505]} Length = 159

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Major tree pollen allergen
species: European white birch (Betula pendula), Bet v 1-l [TaxId: 3505]

 Score = 48.4 bits (115), Expect = 3e-08
 Identities = 22/156 (14%), Positives = 54/156 (34%), Gaps = 19/156 (12%)

Query: 22  EELTGVKAEQIW-AFLEDFFGL-DKWFPTLTTCIPIQGISGQPGCVRFCAGFKTPVDNKD 79
           E  + + A +++ AF+ D   L  K  P   + +     +G PG ++       P     
Sbjct: 8   EATSVIPAARMFKAFILDGDKLVPKVAPQAISSVENIEGNGGPGTIKK---INFPEGFP- 63

Query: 80  DDHEQSVNWTKQKLLAINAEEMTLTYSIVDGNV---GFYGYVSTLTVAPK-ENGCYIEWK 135
                   + K ++  ++       YS+++G           + + +    + GC ++  
Sbjct: 64  ------FKYVKDRVDEVDHTNFKYNYSVIEGGPVGDTLEKISNEIKIVATPDGGCVLKIS 117

Query: 136 YEVEPVKGWRLEDLDCFISSGLQVMARRMKEALQAY 171
            +        ++      S     M   +  A+++Y
Sbjct: 118 NKYHTKGNHEVKAEQVKASKE---MGETLLRAVESY 150

>d1icxa_ d.129.3.1 (A:) Plant pathogenesis-related protein PR10 {Yellow lupine (Lupinus luteus) [TaxId: 3873]} Length = 155

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Plant pathogenesis-related protein PR10
species: Yellow lupine (Lupinus luteus) [TaxId: 3873]

 Score = 43.7 bits (103), Expect = 1e-06
 Identities = 21/156 (13%), Positives = 49/156 (31%), Gaps = 21/156 (13%)

Query: 22  EELTGVKAEQIW-AFLEDFFGL-DKWFPTLTTCIPIQGISGQPGCVRFCAGFKTPVDNKD 79
           E+ + V   +++ A  +D   +  K    + +   ++G  G     +  A          
Sbjct: 8   EQSSTVAPAKLYKALTKDSDEIVPKVIEPIQSVEIVEGNGGPGTIKKIIAIHDGHT---- 63

Query: 80  DDHEQSVNWTKQKLLAINAEEMTLTYSIVDGNVGFYGYVS----TLTVAPKENGCYIEWK 135
                  ++   KL AI+   +T  YSI+ G             +  +   + G   +  
Sbjct: 64  -------SFVLHKLDAIDEANLTYNYSIIGGEGLDESLEKISYESKILPGPDGGSIGKIN 116

Query: 136 YEVEPVKGWRLEDLDCFISSGLQVMARRMKEALQAY 171
            +         E     +    +     + +A++ Y
Sbjct: 117 VKFHTKGDVLSET----VRDQAKFKGLGLFKAIEGY 148

>d1xdfa1 d.129.3.1 (A:1-157) Plant pathogenesis-related protein PR10 {Yellow lupine (Lupinus luteus) [TaxId: 3873]} Length = 157

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Plant pathogenesis-related protein PR10
species: Yellow lupine (Lupinus luteus) [TaxId: 3873]

 Score = 42.2 bits (99), Expect = 5e-06
 Identities = 18/126 (14%), Positives = 41/126 (32%), Gaps = 17/126 (13%)

Query: 22  EELTGVKAEQIW-AFLEDFFGL-DKWFPTLTTCIPIQGISGQPGCVRFCAGFKTPVDNKD 79
           E  + +   +++ A ++D   +  K    + +   ++G +G PG ++             
Sbjct: 8   ESTSTIAPARLYKALVKDADAIIPKAVEAIQSIETVEG-NGGPGTIKKL----------T 56

Query: 80  DDHEQSVNWTKQKLLAINAEEMTLTYSIVDGNV---GFYGYVSTLT-VAPKENGCYIEWK 135
                   +   K+ A++   +   YSIV G                V     G   +  
Sbjct: 57  LIEGGETKYVLHKIEAVDEANLRYNYSIVGGVGLPDTIEKISFETKLVEGANGGSIGKVT 116

Query: 136 YEVEPV 141
            ++E  
Sbjct: 117 IKIETK 122

>d1vjha_ d.129.3.1 (A:) Hypothetical protein At1G24000 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 120

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Hypothetical protein At1G24000
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 41.3 bits (97), Expect = 6e-06
 Identities = 14/77 (18%), Positives = 33/77 (42%), Gaps = 7/77 (9%)

Query: 71  FKTPVDNKDDDHEQSVNWTKQKLLAINAEEMTLTYSIVDGNV--GFYGYVSTLTVAPKE- 127
           F   V++ +   E++    K ++ A++  + T+T  +    +   F     ++ V P   
Sbjct: 21  FSAFVEDTNRPFEKNG---KTEIEAVDLVKKTMTIQMSGSEIQKYFKTLKGSIAVTPIGV 77

Query: 128 -NGCYIEWKYEVEPVKG 143
            +G ++ W +  E V  
Sbjct: 78  GDGSHVVWTFHFEKVHK 94

>d2bk0a1 d.129.3.1 (A:2-154) Major allergen api g 1 {Celery (Apium graveolens) [TaxId: 4045]} Length = 153

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Major allergen api g 1
species: Celery (Apium graveolens) [TaxId: 4045]

 Score = 37.5 bits (87), Expect = 2e-04
 Identities = 24/128 (18%), Positives = 47/128 (36%), Gaps = 17/128 (13%)

Query: 22  EELTGVKAEQIW-AFLEDFFGL-DKWFPTLTTCIPIQGISGQPGCVRFCAGFKTPVDNKD 79
           E  + V AE+I+  F+ D   +  K  P     + I+G  G PG ++       P     
Sbjct: 8   ELTSSVSAEKIFQGFVIDVDTVLPKAAPGAYKSVEIKG-DGGPGTLKI---ITLPDGGP- 62

Query: 80  DDHEQSVNWTKQKLLAINAEEMTLTYSIVDGNV---GFYGYVSTLTVAPK-ENGCYIEWK 135
                 +     ++  +N E +T  YS++DG++         + + + P  + G   +  
Sbjct: 63  ------ITTMTLRIDGVNKEALTFDYSVIDGDILLGFIESIENHVVLVPTADGGSICKTT 116

Query: 136 YEVEPVKG 143
                   
Sbjct: 117 AIFHTKGD 124

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	181
d3cnwa1	138	Uncharacterized protein XoxI {Bacillus cereus [Tax	99.94
d1fm4a_	159	Major tree pollen allergen {European white birch (	99.9
d1icxa_	155	Plant pathogenesis-related protein PR10 {Yellow lu	99.9
d2bk0a1	153	Major allergen api g 1 {Celery (Apium graveolens)	99.9
d1e09a_	159	Major tree pollen allergen {Sweet cherry (Prunus a	99.89
d1xdfa1	157	Plant pathogenesis-related protein PR10 {Yellow lu	99.89
d1txca1	147	Plant pathogenesis-related protein PR10 {Jicama (P	99.88
d2d4ra1	146	Hypothetical protein TTHA0849 {Thermus thermophilu	99.74
d2rera1	155	Multifunctional enzyme TcmN, cyclase/aromatase dom	99.73
d2b79a1	137	Hypothetical protein SMU440 {Streptococcus mutans	99.7
d2ns9a1	147	Hypothetical protein APE2225 {Aeropyrum pernix [Ta	99.61
d1vjha_	120	Hypothetical protein At1G24000 {Thale cress (Arabi	99.54
d1t17a_	148	Hypothetical protein CC1736 {Caulobacter crescentu	99.45
d2qpva1	133	Uncharacterized protein Atu1531 {Agrobacterium tum	99.4
d2pcsa1	147	Hypothetical protein GKP20 {Geobacillus kaustophil	99.23
d1xuva_	163	Hypothetical protein MM0500 {Methanosarcina mazei	99.04
d2il5a1	164	Hypothetical protein SA2116 {Staphylococcus aureus	98.93
d1z94a1	143	Hypothetical protein CV1439 {Chromobacterium viola	98.85
d1xfsa_	165	Hypothetical protein NE0264 {Nitrosomonas europaea	98.8
d1xn5a_	138	Hypothetical protein BH1534 {Bacillus halodurans [	98.73
d2nn5a1	160	Hypothetical protein EF2215 {Enterococcus faecalis	98.72
d3elia1	143	Uncharacterized protein SPO3351 {Silicibacter pome	98.57
d1xn6a_	143	Hypothetical protein BC4709 {Bacillus cereus [TaxI	98.53
d1zxfa1	155	Calicheamicin gene cluster protein CalC {Micromono	98.37
d1x53a1	132	Activator of 90 kda heat shock protein ATPase homo	98.07
d2k5ga1	183	Uncharacterized protein BPP1335 {Bordetella parape	98.06
d1jssa_	199	Cholesterol-regulated Start protein 4 (Stard4). {M	97.79
d1em2a_	214	Lipid transport domain of Mln64 {Human (Homo sapie	97.57
d1ln1a_	203	Phosphatidylcholine transfer protein {Human (Homo	97.52
d2ffsa1	151	Hypothetical protein PA1206 {Pseudomonas aeruginos	96.77
d2psoa1	197	Star-related lipid transfer protein 13 {Human (Hom	96.04

>d3cnwa1 d.129.3.8 (A:3-140) Uncharacterized protein XoxI {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Atu1531-like
domain: Uncharacterized protein XoxI
species: Bacillus cereus [TaxId: 1396]

Probab=99.94  E-value=1.1e-25  Score=166.15  Aligned_cols=127  Identities=27%  Similarity=0.446  Sum_probs=105.6

Q ss_pred             eEEEEEEeCCCHHHHHHHHhccCCcccccccceeEEEecCCCCCCceEEEEeeeecCCCCCCCCCcCccceEEEEEEEEe
Q 030202           18 GRACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLAIN   97 (181)
Q Consensus        18 ~~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~G~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~~D   97 (181)
                      ...+++| +||||+||++++||.++++|+|.+.+|....+     |++|.+++   + +   |      ..+.|+|+.+|
T Consensus         4 ~~~si~I-~A~pe~VW~~v~df~~~~~W~p~v~~~~~~~~-----G~~R~~~~---~-~---g------~~~~E~l~~~d   64 (138)
T d3cnwa1           4 TTTSMEI-FGSPEQVWQLIGGFNSLPDWLPYIPSSKLTEG-----GRVRHLAN---P-D---G------DTIIERLEVFN   64 (138)
T ss_dssp             EEEEEEE-SSCHHHHHHHHCCTTCGGGTCTTCSEEEEEGG-----GTEEEEEC---T-T---C------CEEEEEEEEEE
T ss_pred             EEEEEEE-eCCHHHHHHHHhCccchHHHhcccceeEeecC-----ceeEEEEe---c-C---C------ceeEEEEEEEe
Confidence            5689999 99999999999999999999999999987543     78999986   1 2   3      27999999999


Q ss_pred             cCCCeEEEEEeecccceeeEEEEEEEEEcCC--ceEEEEEEEEeeCCCCCHHHHH----HHHHHHHHHHHHHH
Q 030202           98 AEEMTLTYSIVDGNVGFYGYVSTLTVAPKEN--GCYIEWKYEVEPVKGWRLEDLD----CFISSGLQVMARRM  164 (181)
Q Consensus        98 ~~~~~~~y~v~~g~~p~~~~~~t~~v~p~~~--gT~v~W~~~~~p~~~~~~~~~~----~~~~~gl~~l~~~l  164 (181)
                      +.+++++|+++++++|+++|.++++|.|.++  +|+|+|+++|+|. +..++.+.    .+|+.+|++|++++
T Consensus        65 ~~~~~~~y~~~~~~~p~~~~~~~~~l~p~~~g~~t~v~w~~~f~p~-~~~~~~~~~~~~~~~~~~l~~L~~~f  136 (138)
T d3cnwa1          65 DKERYYTYSIMNAPFPVTNYLSTIQVKEGTESNTSLVEWSGTFTPV-EVSDEEAINLFHGIYSDGLKALQQAF  136 (138)
T ss_dssp             TTTTEEEEEEEECSSSEEEEEEEEEEEECSSTTCEEEEEEEEEEES-SSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcEEEEEEecCCCcceeeEEEEEEEECCCCCeEEEEEEEEEecC-CCCHHHHHHHHHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999875  3999999999986 34555443    44555566665554

>d1fm4a_ d.129.3.1 (A:) Major tree pollen allergen {European white birch (Betula pendula), Bet v 1-l [TaxId: 3505]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Major tree pollen allergen
species: European white birch (Betula pendula), Bet v 1-l [TaxId: 3505]

Probab=99.90  E-value=1e-22  Score=154.58  Aligned_cols=140  Identities=14%  Similarity=0.216  Sum_probs=113.7

Q ss_pred             eEEEEEEeCCCHHHHHHH-HhccCCc-cccccc-ceeEEEecCCCCCCceEEEEeeeecCCCCCCCCCcCccceEEEEEE
Q 030202           18 GRACEELTGVKAEQIWAF-LEDFFGL-DKWFPT-LTTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLL   94 (181)
Q Consensus        18 ~~v~~~I~~Ap~e~VW~~-l~Df~~~-~~w~P~-v~~~~~~~G~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl~   94 (181)
                      -..++++ ++||+++|++ +.|++++ |+|+|. +.+++.++|+ ++||+||.+++.    .+  |   + ...++|||+
T Consensus         5 ~e~E~~~-~v~a~k~~k~~~~d~~~l~pk~~p~~i~~ie~~eGd-g~~GsIr~~~~~----~~--~---~-~~~~Kerve   72 (159)
T d1fm4a_           5 YETEATS-VIPAARMFKAFILDGDKLVPKVAPQAISSVENIEGN-GGPGTIKKINFP----EG--F---P-FKYVKDRVD   72 (159)
T ss_dssp             EEEEEEE-SSCHHHHHHHHTTTHHHHHHHHCTTTCCEEEEEECS-SSTTCEEEEECC----TT--S---S-SSEEEEEEE
T ss_pred             EEEEeec-cCCHHHHHHHHHhCcccccccccCcceEEEEEECCC-CCCCCEEEEEec----CC--C---C-ceEEEEEEE
Confidence            3567788 9999999997 5799996 999996 5566777775 589999999972    12  3   1 358999999


Q ss_pred             EEecCCCeEEEEEeeccc---ceeeEEEEEEEEEcCC-ceEEEEEEEEeeCCCC--CHHHHHHHHHHHHHHHHHHHHHHH
Q 030202           95 AINAEEMTLTYSIVDGNV---GFYGYVSTLTVAPKEN-GCYIEWKYEVEPVKGW--RLEDLDCFISSGLQVMARRMKEAL  168 (181)
Q Consensus        95 ~~D~~~~~~~y~v~~g~~---p~~~~~~t~~v~p~~~-gT~v~W~~~~~p~~~~--~~~~~~~~~~~gl~~l~~~le~~~  168 (181)
                      ++|+++++++|++++|+.   .++.|..+++|.|.++ ||.++|+.+|++..+.  .++.. ..+...+..|.+.+|+||
T Consensus        73 ~iD~~~~~~~y~viEGd~l~~~~~s~~~~~k~~~~~~gg~v~kwt~eYe~~~~~~~~~e~~-k~~ke~~~~~~K~iE~YL  151 (159)
T d1fm4a_          73 EVDHTNFKYNYSVIEGGPVGDTLEKISNEIKIVATPDGGCVLKISNKYHTKGNHEVKAEQV-KASKEMGETLLRAVESYL  151 (159)
T ss_dssp             EEETTTTEEEEEEEEBTTBTTTEEEEEEEEEEEECTTSCEEEEEEEEEEESTTCCCCTTTT-HHHHHHHHHHHHHHHHHH
T ss_pred             EEcccccEEEEEEEeccccccceEEEEEEEEEecCCCCceEEEEEEEEEECCCCCCCHHHH-HHHHHHHHHHHHHHHHHH
Confidence            999999999999999973   5899999999999986 5999999999987653  23333 446677788999999998


Q ss_pred             hh
Q 030202          169 QA  170 (181)
Q Consensus       169 ~~  170 (181)
                      +|
T Consensus       152 la  153 (159)
T d1fm4a_         152 LA  153 (159)
T ss_dssp             HH
T ss_pred             hh
Confidence            75

>d1icxa_ d.129.3.1 (A:) Plant pathogenesis-related protein PR10 {Yellow lupine (Lupinus luteus) [TaxId: 3873]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Plant pathogenesis-related protein PR10
species: Yellow lupine (Lupinus luteus) [TaxId: 3873]

Probab=99.90  E-value=8.8e-23  Score=154.20  Aligned_cols=140  Identities=15%  Similarity=0.177  Sum_probs=118.8

Q ss_pred             EEEEEEeCCCHHHHHHHH-hccCCc-ccccccceeEEEecCCCCCCceEEEEeeeecCCCCCCCCCcCccceEEEEEEEE
Q 030202           19 RACEELTGVKAEQIWAFL-EDFFGL-DKWFPTLTTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLAI   96 (181)
Q Consensus        19 ~v~~~I~~Ap~e~VW~~l-~Df~~~-~~w~P~v~~~~~~~G~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~~   96 (181)
                      ..+++. ++||+++|+++ .|+.++ |+++|.+.+++.++|+ |+||+||.+++.    .+  |   + ...++|||.++
T Consensus         6 ~~E~~~-~v~a~klfka~~~d~~~l~pk~~~~i~s~e~~eGd-Gg~GsIk~~~~~----~~--~---~-~~~~Kerie~i   73 (155)
T d1icxa_           6 ENEQSS-TVAPAKLYKALTKDSDEIVPKVIEPIQSVEIVEGN-GGPGTIKKIIAI----HD--G---H-TSFVLHKLDAI   73 (155)
T ss_dssp             EEEEEE-SSCHHHHHHHHTTTHHHHHHHHSTTEEEEEEEESS-SSTTCEEEEEEE----SS--S---S-EEEEEEEEEEE
T ss_pred             EEeEEe-cCCHHHHhhhheeccchhchhhhhheeeeeEecCC-CccceEEEEEec----cC--C---c-eEEEEEEEEEE
Confidence            456778 99999999975 699998 9999999999999997 689999999983    22  3   2 45899999999


Q ss_pred             ecCCCeEEEEEeeccc---ceeeEEEEEEEEEcCC-ceEEEEEEEEeeCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 030202           97 NAEEMTLTYSIVDGNV---GFYGYVSTLTVAPKEN-GCYIEWKYEVEPVKGWRLEDLDCFISSGLQVMARRMKEALQA  170 (181)
Q Consensus        97 D~~~~~~~y~v~~g~~---p~~~~~~t~~v~p~~~-gT~v~W~~~~~p~~~~~~~~~~~~~~~gl~~l~~~le~~~~~  170 (181)
                      |+++++++|++++|++   .++.+..++++.|.++ ||.++|+.+|++..+..++.-...+.....+|.+.+|+||+|
T Consensus        74 D~en~~~~y~viEGd~l~~~~~~~~~~~k~~~~~~~g~i~k~t~eYe~~g~~~~e~~~~~~ke~~~~~fK~iE~YLla  151 (155)
T d1icxa_          74 DEANLTYNYSIIGGEGLDESLEKISYESKILPGPDGGSIGKINVKFHTKGDVLSETVRDQAKFKGLGLFKAIEGYVLA  151 (155)
T ss_dssp             EGGGTEEEEEEEEETTSCTTEEEEEEEEEEEECGGGCEEEEEEEEEEESSSSCCHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred             cccccEEEEEEEecccccccEEEEEEEEEEecCCCCCeEEEEEEEEEECCCCCChhhHHHHHHHHHHHHHHHHHHHhh
Confidence            9999999999999984   5889999999999886 699999999999866555444455677788999999999875

>d2bk0a1 d.129.3.1 (A:2-154) Major allergen api g 1 {Celery (Apium graveolens) [TaxId: 4045]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Major allergen api g 1
species: Celery (Apium graveolens) [TaxId: 4045]

Probab=99.90  E-value=4e-22  Score=150.29  Aligned_cols=140  Identities=18%  Similarity=0.222  Sum_probs=114.2

Q ss_pred             eeEEEEEEeCCCHHHHHHHH-hccCCc-cccccc-ceeEEEecCCCCCCceEEEEeeeecCCCCCCCCCcCccceEEEEE
Q 030202           17 QGRACEELTGVKAEQIWAFL-EDFFGL-DKWFPT-LTTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKL   93 (181)
Q Consensus        17 ~~~v~~~I~~Ap~e~VW~~l-~Df~~~-~~w~P~-v~~~~~~~G~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl   93 (181)
                      .-.+++++ ++||+++|+++ .|++++ |+++|. +.+++ ++|+ |+||+||.+++.    .+  |   + ...++||+
T Consensus         4 t~e~E~~~-~v~a~k~~ka~~~d~~~l~Pk~~P~~i~sve-veGd-G~~GsIr~~~~~----~~--~---~-~~~~Kerv   70 (153)
T d2bk0a1           4 THVLELTS-SVSAEKIFQGFVIDVDTVLPKAAPGAYKSVE-IKGD-GGPGTLKIITLP----DG--G---P-ITTMTLRI   70 (153)
T ss_dssp             EEEEEEEE-SSCHHHHHHHHTTSHHHHHHHHCGGGCSEEE-EESS-SSTTCEEEEECC----TT--S---S-CCEEEEEE
T ss_pred             EEEEEEec-cCCHHHHHHHHhhcccccccccccceeeEEE-EECC-CCCCeEEEEEEe----cC--c---c-ceeeEEEE
Confidence            44578889 99999999976 699886 999996 45555 6776 689999999972    22  3   2 45899999


Q ss_pred             EEEecCCCeEEEEEeeccc---ceeeEEEEEEEEEcCC-ceEEEEEEEEeeCCCC--CHHHHHHHHHHHHHHHHHHHHHH
Q 030202           94 LAINAEEMTLTYSIVDGNV---GFYGYVSTLTVAPKEN-GCYIEWKYEVEPVKGW--RLEDLDCFISSGLQVMARRMKEA  167 (181)
Q Consensus        94 ~~~D~~~~~~~y~v~~g~~---p~~~~~~t~~v~p~~~-gT~v~W~~~~~p~~~~--~~~~~~~~~~~gl~~l~~~le~~  167 (181)
                      .++|+++++++|++++|+.   .++.|..++++.|.++ ||.++|+.+|++..+.  .++.+ ..+...+.+|.+.+|+|
T Consensus        71 e~iD~~~~~~~y~viEGd~l~~~y~s~~~~~~~~~~~~ggsv~k~t~eYe~~~~~~~~~e~~-k~~~e~~~~~~K~iE~Y  149 (153)
T d2bk0a1          71 DGVNKEALTFDYSVIDGDILLGFIESIENHVVLVPTADGGSICKTTAIFHTKGDAVVPEENI-KYANEQNTALFKALEAY  149 (153)
T ss_dssp             EEEETTTTEEEEEEEESGGGTTTEEEEEEEEEEEECTTSCEEEEEEEEEEESTTCCCCHHHH-HHHHHHHHHHHHHHHHH
T ss_pred             EEEecCccEEEEEEEecccccccEEEEEEEEEEecCCCCCeEEEEEEEEEECCCCCCCHHHH-HHHHHHHHHHHHHHHHH
Confidence            9999999999999999974   3889999999999986 6999999999997653  34444 44566678888999999


Q ss_pred             Hhh
Q 030202          168 LQA  170 (181)
Q Consensus       168 ~~~  170 (181)
                      |+|
T Consensus       150 Lla  152 (153)
T d2bk0a1         150 LIA  152 (153)
T ss_dssp             HHH
T ss_pred             Hhc
Confidence            875

>d1e09a_ d.129.3.1 (A:) Major tree pollen allergen {Sweet cherry (Prunus avium), pru av 1 [TaxId: 42229]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Major tree pollen allergen
species: Sweet cherry (Prunus avium), pru av 1 [TaxId: 42229]

Probab=99.89  E-value=2.6e-22  Score=152.21  Aligned_cols=140  Identities=14%  Similarity=0.180  Sum_probs=114.6

Q ss_pred             EEEEEEeCCCHHHHHHHH-hccCCc-cccccc-ceeEEEecCCCCCCceEEEEeeeecCCCCCCCCCcCccceEEEEEEE
Q 030202           19 RACEELTGVKAEQIWAFL-EDFFGL-DKWFPT-LTTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLA   95 (181)
Q Consensus        19 ~v~~~I~~Ap~e~VW~~l-~Df~~~-~~w~P~-v~~~~~~~G~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~   95 (181)
                      ..++++ ++||+++|+++ +|++++ |+++|. +.++++++|+ |+|||||.+++.    .+  |   + ...++|||..
T Consensus         6 ~~E~~~-~vpa~k~~k~~~~d~~~l~pk~~p~~i~~ie~~eGd-g~~GsIr~~~~~----~~--~---~-~~~~KErie~   73 (159)
T d1e09a_           6 ESEFTS-EIPPPRLFKAFVLDADNLVPKIAPQAIKHSEILEGD-GGPGTIKKITFG----EG--S---Q-YGYVKHKIDS   73 (159)
T ss_dssp             EEEEEE-SSCHHHHHHHHTTTHHHHHHHHCTTTEEEEEEEESS-SSTTCEEEEEEC----CS--S---S-CEEEEEEEEE
T ss_pred             EEEEee-cCCHHHHHHHHhcChhhcCcccCCcceeEEEEEcCC-CCcCcEEEEEEc----CC--C---C-cEEEEEEEEE
Confidence            467888 99999999975 799987 999996 5667777786 579999999982    22  3   2 4589999999


Q ss_pred             EecCCCeEEEEEeeccc---ceeeEEEEEEEEEcCC-ceEEEEEEEEeeCCCCCH-HHHHHHHHHHHHHHHHHHHHHHhh
Q 030202           96 INAEEMTLTYSIVDGNV---GFYGYVSTLTVAPKEN-GCYIEWKYEVEPVKGWRL-EDLDCFISSGLQVMARRMKEALQA  170 (181)
Q Consensus        96 ~D~~~~~~~y~v~~g~~---p~~~~~~t~~v~p~~~-gT~v~W~~~~~p~~~~~~-~~~~~~~~~gl~~l~~~le~~~~~  170 (181)
                      +|+++++++|++++|++   .++.|..++++.|.++ ||.++|+++|++..+..+ +.-...+...+..|.+.||+||+|
T Consensus        74 iD~~~~~~~y~viEGd~l~~~~~s~~~~~~~~~~~~~g~vvkwt~eYe~~~~~~~~~e~~~~~~e~~~~~~K~iEayLla  153 (159)
T d1e09a_          74 IDKENYSYSYTLIEGDALGDTLEKISYETKLVASPSGGSIIKSTSHYHTKGNVEIKEEHVKAGKEKASNLFKLIETYLKG  153 (159)
T ss_dssp             EETTTTEEEEEECCCTTTGGGEEEEEEEEEECCCTTSSEEEEEEEEEEECSSCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EcccccEEEEEEEecccccccEEEEEEEEEEccCCCCCcEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            99999999999999985   5888999999998875 699999999999775433 222345677888999999999875

>d1xdfa1 d.129.3.1 (A:1-157) Plant pathogenesis-related protein PR10 {Yellow lupine (Lupinus luteus) [TaxId: 3873]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Plant pathogenesis-related protein PR10
species: Yellow lupine (Lupinus luteus) [TaxId: 3873]

Probab=99.89  E-value=2.3e-22  Score=152.12  Aligned_cols=140  Identities=14%  Similarity=0.165  Sum_probs=117.3

Q ss_pred             eEEEEEEeCCCHHHHHHHH-hccCCc-ccccccceeEEEecCCCCCCceEEEEeeeecCCCCCCCCCcCccceEEEEEEE
Q 030202           18 GRACEELTGVKAEQIWAFL-EDFFGL-DKWFPTLTTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLA   95 (181)
Q Consensus        18 ~~v~~~I~~Ap~e~VW~~l-~Df~~~-~~w~P~v~~~~~~~G~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~   95 (181)
                      -..++++ ++||+++|+++ .|++++ |++.+.+.++++++|+ |+||+||.+++.    .|  |   + ...++|||.+
T Consensus         5 ~~~E~~~-~v~a~k~fka~~~d~~~l~pk~p~~i~s~e~~eGd-G~~GsIr~~~~~----~g--~---~-~~~~Kerie~   72 (157)
T d1xdfa1           5 FEDESTS-TIAPARLYKALVKDADAIIPKAVEAIQSIETVEGN-GGPGTIKKLTLI----EG--G---E-TKYVLHKIEA   72 (157)
T ss_dssp             EEEEEEE-SSCHHHHHHHHHHSHHHHHHHHCTTEEEEEEEESS-SSTTCEEEEEEE----ET--T---E-EEEEEEEEEE
T ss_pred             EEEEEec-cCCHHHHHHHHhhchhhccccchhheecceeecCC-CCCCcEEEEEEc----CC--C---c-cEEEEEEEEE
Confidence            3567888 99999999875 699998 8887789999999997 689999999983    22  3   2 3589999999


Q ss_pred             EecCCCeEEEEEeeccc---ceeeEEEEEEEEEcCC-ceEEEEEEEEeeCCCC--CHHHHHHHHHHHHHHHHHHHHHHHh
Q 030202           96 INAEEMTLTYSIVDGNV---GFYGYVSTLTVAPKEN-GCYIEWKYEVEPVKGW--RLEDLDCFISSGLQVMARRMKEALQ  169 (181)
Q Consensus        96 ~D~~~~~~~y~v~~g~~---p~~~~~~t~~v~p~~~-gT~v~W~~~~~p~~~~--~~~~~~~~~~~gl~~l~~~le~~~~  169 (181)
                      +|+++++++|++++|..   .++.|..++++.|.++ ||.++|+.+|++..+.  .++.+ ..+...+.+|.+.+|+||+
T Consensus        73 vD~e~~~~~y~viEGd~l~~~~~s~~~~~k~~~~~~ggsv~k~t~eYe~~~~~~~~~e~i-k~~~e~~~~~~K~iEaYLl  151 (157)
T d1xdfa1          73 VDEANLRYNYSIVGGVGLPDTIEKISFETKLVEGANGGSIGKVTIKIETKGDAQPNEEEG-KAAKARGDAFFKAIENYLS  151 (157)
T ss_dssp             EEGGGTEEEEEEESSTTSCTTEEEEEEEEEEEECTTSSEEEEEEEEEEESSSSCCCHHHH-HHHHHHHHTTTHHHHHHHH
T ss_pred             EechhcEEEEEEEecccccccEEEEEEEEEEEcCCCCceEEEEEEEEEECCCCCCCHHHH-HHHHHHHHHHHHHHHHHHh
Confidence            99999999999999974   4889999999999886 6999999999998654  34444 4467778889999999997


Q ss_pred             h
Q 030202          170 A  170 (181)
Q Consensus       170 ~  170 (181)
                      |
T Consensus       152 a  152 (157)
T d1xdfa1         152 A  152 (157)
T ss_dssp             T
T ss_pred             h
Confidence            5

>d1txca1 d.129.3.1 (A:1-147) Plant pathogenesis-related protein PR10 {Jicama (Pachyrhizus erosus), SPE-16 [TaxId: 109171]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Plant pathogenesis-related protein PR10
species: Jicama (Pachyrhizus erosus), SPE-16 [TaxId: 109171]

Probab=99.88  E-value=1.1e-21  Score=146.88  Aligned_cols=135  Identities=14%  Similarity=0.155  Sum_probs=106.0

Q ss_pred             EEEEEEeCCCHHHHHH-HHhccCCccccccc-ceeEEEecCCCCCCceEEEEeeeecCCCCCCCCCcCccceEEEEEEEE
Q 030202           19 RACEELTGVKAEQIWA-FLEDFFGLDKWFPT-LTTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLAI   96 (181)
Q Consensus        19 ~v~~~I~~Ap~e~VW~-~l~Df~~~~~w~P~-v~~~~~~~G~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~~   96 (181)
                      ..++++ ++||+++|+ ++.||++++.|+|. +.++++++|+ |+||+||.+++.    .+  |   + ...++|||..+
T Consensus         6 ~~E~~~-~v~a~k~~ka~~~d~~~l~~~~p~~i~s~e~~eGd-g~~GsIr~~~~~----~g--~---~-~~~~kErl~~i   73 (147)
T d1txca1           6 RDETSS-SVAPAKLYKALTKDSDTIAQKIDGPIQSIELVEGN-GGVGTIKKITAN----EG--D---K-TSFVLQKVDAI   73 (147)
T ss_dssp             EEEEEE-SSCHHHHHHHHHTTHHHHHHHTTSSEEEEEEEESS-SSTTCEEEEEEE----ET--T---E-EEEEEEEEEEE
T ss_pred             EEEEec-cCCHHHHHHhhhcccccCccccccccccceeecCC-CCcceEEEEEEc----CC--C---c-ceEEEEEEEEE
Confidence            467888 999999997 56799999888885 6777877775 579999999983    22  2   2 34899999999


Q ss_pred             ecCCCeEEEEEeeccc---ceeeEEEEEEEEEcCC-ceEEEEEEEEeeCCCCCH-HHHHHHHHHHHHHHHHHHH
Q 030202           97 NAEEMTLTYSIVDGNV---GFYGYVSTLTVAPKEN-GCYIEWKYEVEPVKGWRL-EDLDCFISSGLQVMARRMK  165 (181)
Q Consensus        97 D~~~~~~~y~v~~g~~---p~~~~~~t~~v~p~~~-gT~v~W~~~~~p~~~~~~-~~~~~~~~~gl~~l~~~le  165 (181)
                      |+++++++|++++|+.   +++.|..++++.|.++ ||.++|+.+|++..+..+ +.-......+..+|.+.+|
T Consensus        74 D~~~~~~~y~iiEGd~l~~~~~s~~~~~~~~~~~~ggs~vkw~~~y~~~~~~~~~ee~~k~~k~~~~~~~KavE  147 (147)
T d1txca1          74 DEANLGYDYSIVGGTGLPESLEKLSFETKVVAGSGGGSISKVTLKFHTKGDAPLSDAVRDDALAKGAGFFKAIE  147 (147)
T ss_dssp             EGGGTEEEEEEEESTTSCTTEEEEEEEEEEEECSTTCEEEEEEEEEEETTSCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCcEEEEEEEccCccccceEEEEEEEEEecCCCCCcEEEEEEEEEECCCCCCCHHHHHHHHHHHhhhheecC
Confidence            9999999999999974   6889999999999876 699999999998764332 2222334555566666665

>d2d4ra1 d.129.3.6 (A:2-147) Hypothetical protein TTHA0849 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: oligoketide cyclase/dehydrase-like
domain: Hypothetical protein TTHA0849
species: Thermus thermophilus [TaxId: 274]

Probab=99.74  E-value=1.4e-16  Score=116.18  Aligned_cols=137  Identities=12%  Similarity=0.168  Sum_probs=100.8

Q ss_pred             EEEEEEeCCCHHHHHHHHhccCCcccccccceeEEEecCCCCCCceEEEEeeeecCCCCCCCCCcCccceEEEEEEEEec
Q 030202           19 RACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLAINA   98 (181)
Q Consensus        19 ~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~G~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~~D~   98 (181)
                      +.++.| +||+++||+++.|++++++|+|.+.+++++.+++.+.+....+..     .+  +     ......+++ +++
T Consensus         4 ~~~~~I-~ap~~~V~~~l~D~~~~~~w~p~~~~~~il~~~~~~~~~~~~~~~-----~~--~-----~~~~~~~~~-~~~   69 (146)
T d2d4ra1           4 RAERYI-PAPPERVYRLAKDLEGLKPYLKEVESLEVVAREGARTRSRWVAVA-----MG--K-----KVRWLEEEE-WDD   69 (146)
T ss_dssp             EEEEEE-SSCHHHHHHHHHCHHHHGGGCTTEEEEEEEEEETTEEEEEEEEEE-----TT--E-----EEEEEEEEE-EET
T ss_pred             EEEEEE-CCCHHHHHHHHHChhhHHhhccccEEEEEEEecCCcceEEEEEEe-----ee--e-----eEEEEEEEE-EcC
Confidence            468889 999999999999999999999999999987654433333223322     11  1     113455554 455


Q ss_pred             CCCeEEEEEeecccceeeEEEEEEEEEcCCceEEEEEEEEeeCC----CCCHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 030202           99 EEMTLTYSIVDGNVGFYGYVSTLTVAPKENGCYIEWKYEVEPVK----GWRLEDLDCFISSGLQVMARRMKEALQAY  171 (181)
Q Consensus        99 ~~~~~~y~v~~g~~p~~~~~~t~~v~p~~~gT~v~W~~~~~p~~----~~~~~~~~~~~~~gl~~l~~~le~~~~~~  171 (181)
                      .+..+.|++..|+  +..+.++++|.|.++||+|+|+++|++..    +.....+...++..++.+.+.|++++.++
T Consensus        70 ~~~~i~~~~~~g~--~~~~~g~w~l~~~~~gT~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~  144 (146)
T d2d4ra1          70 ENLRNRFFSPEGD--FDRYEGTWVFLPEGEGTRVVLTLTYELTIPIFGGLLRKLVQKLMQENVESLLKGLEERVLAA  144 (146)
T ss_dssp             TTTEEEEEEEEES--CSEEEEEEEEEECSSSEEEEEEEEEECCCTTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEEEccCC--cceEEEEEEEEecCCceEEEEEEEEEEcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            6889999999875  45689999999999999999999998532    12233345778888888888888887665

>d2rera1 d.129.3.6 (A:1-155) Multifunctional enzyme TcmN, cyclase/aromatase domain {Streptomyces glaucescens [TaxId: 1907]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: oligoketide cyclase/dehydrase-like
domain: Multifunctional enzyme TcmN, cyclase/aromatase domain
species: Streptomyces glaucescens [TaxId: 1907]

Probab=99.73  E-value=3.2e-16  Score=114.94  Aligned_cols=141  Identities=10%  Similarity=0.061  Sum_probs=100.1

Q ss_pred             EEEEEEeCCCHHHHHHHHhccCCcccccccceeEEEecCCCCCCceEEEEeeeecCCCCCCCCCcCccceEEEEEEEEec
Q 030202           19 RACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLAINA   98 (181)
Q Consensus        19 ~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~G~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~~D~   98 (181)
                      .-+++| +||+++||+++.|+.++++|+|.+..+.+.+..+++++....+...    .+  +     .....+....+++
T Consensus         6 e~si~I-~Ap~~~Vw~~l~D~~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~----~~--~-----~~~~~~~~~~~~~   73 (155)
T d2rera1           6 DNSIVV-NAPFELVWDVTNDIEAWPELFSEYAEAEILRQDGDGFDFRLKTRPD----AN--G-----RVWEWVSHRVPDK   73 (155)
T ss_dssp             EEEEEE-SSCHHHHHHHHTCGGGHHHHCSSEEEEEEEECCSSCEEEEEEECCC----TT--S-----CCCEEEEEEEEEG
T ss_pred             EEEEEE-CCCHHHHHHHHHChhhHhhhhhhceEEEEeecCCCceEEEEEEEEe----ee--e-----eeEEEEEEEEEcC
Confidence            458899 9999999999999999999999999998876544444443333320    11  1     1134444455667


Q ss_pred             CCCeEEEEEeecccceeeEEEEEEEEEcCCceEEEEEEEEeeCC--CCCH----HHHHHHHHHHHHHHHHHHHHHHhhhh
Q 030202           99 EEMTLTYSIVDGNVGFYGYVSTLTVAPKENGCYIEWKYEVEPVK--GWRL----EDLDCFISSGLQVMARRMKEALQAYE  172 (181)
Q Consensus        99 ~~~~~~y~v~~g~~p~~~~~~t~~v~p~~~gT~v~W~~~~~p~~--~~~~----~~~~~~~~~gl~~l~~~le~~~~~~~  172 (181)
                      ..+.+.|.... ..++..+.++++|.|.++||+|+|+.+|+...  ....    ..+...++..|++|++.+|+..++|.
T Consensus        74 ~~~~~~~~~~~-~~~~~~~~~~w~~~~~~~gT~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk~~~E~~~~~~~  152 (155)
T d2rera1          74 GSRTVRAHRVE-TGPFAYMNLHWTYRAVAGGTEMRWVQEFDMKPGAPFDNAHMTAHLNTTTRANMERIKKIIEDRHREGQ  152 (155)
T ss_dssp             GGTEEEEEESS-CTTEEEEEEEEEEEEETTEEEEEEEEEEEECTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CccEEEEEeec-CccceeeEEEEEEeecCCccEEEEEEEEEECCCccccHHHHHHHHHHHHHHHHHHHHHHHHhHHhhcc
Confidence            67788777654 34678889999999999999999998887432  2222    33345577788888888888877653

>d2b79a1 d.129.3.9 (A:1-137) Hypothetical protein SMU440 {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Smu440-like
domain: Hypothetical protein SMU440
species: Streptococcus mutans [TaxId: 1309]

Probab=99.70  E-value=8.4e-16  Score=110.77  Aligned_cols=131  Identities=10%  Similarity=0.041  Sum_probs=95.3

Q ss_pred             EEEEEEeCCCHHHHHHHHhccCCcccccccceeEEEecCCCCCCceEEEEeeeecCCCCCCCCCcCccceEEEEEEEEec
Q 030202           19 RACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLAINA   98 (181)
Q Consensus        19 ~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~G~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~~D~   98 (181)
                      +.++.| +||+|+||+++.|+.++++|+|.+..++.. + ..++|+.+.+..     .+  |      ..+..++++++|
T Consensus         4 s~si~I-~Ap~e~Vw~~~~d~~~~~~W~~~~~~~~~~-~-~~~~G~~~~~~~-----~~--~------~~~~~~v~~~~p   67 (137)
T d2b79a1           4 SFELAV-NTKKEDAWTYYSQVNQWFVWEGDLEQISLE-G-EFTTGQKGKMKM-----ED--M------PELAFTLVEVRE   67 (137)
T ss_dssp             EEEEEE-SSCHHHHHHHHHCGGGGGGTSTTEEEEEES-S-SSSTTCEEEEEE-----TT--S------CCEEEEECCCBT
T ss_pred             EEEEEE-cCCHHHHHHHHhhhhhCccccCcccceeec-c-cccceEEEEEEE-----cC--C------cceeeeeecccC
Confidence            578999 999999999999999999999999888753 3 335787777764     22  2      157788999987


Q ss_pred             CCCeEEEEEeecccceeeEEEEEEEEEcCCc-eEEEEEEEEeeCC-CCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 030202           99 EEMTLTYSIVDGNVGFYGYVSTLTVAPKENG-CYIEWKYEVEPVK-GWRLEDLDCFISSGLQVMARRMKEALQ  169 (181)
Q Consensus        99 ~~~~~~y~v~~g~~p~~~~~~t~~v~p~~~g-T~v~W~~~~~p~~-~~~~~~~~~~~~~gl~~l~~~le~~~~  169 (181)
                       +++++|+..   .|...+...+.+.+.++| |+|+|+++|.+.. ......+...++.+++...++|+++++
T Consensus        68 -~~~~~~~~~---~~~~~~~~~~~~~~~~~g~t~vt~~~~~~g~~~~~~~~~~~~~v~~~~~~~l~~LK~~~E  136 (137)
T d2b79a1          68 -NQCFSDLTA---TPFGNVLFEHEILENPDGTISLRHSVSLTDSDTTEEALAFLKQIFADVPESVGKLKQILE  136 (137)
T ss_dssp             -TTEEEEEEE---ETTEEEEEEEEEEECTTSCEEEEEEEEECSCSCCTTHHHHHHHHHTTHHHHHHHHHHHHT
T ss_pred             -CcEEEEEec---ccceeeeeEEEEccCCCCcEEEEEEEecccccchHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence             678999753   234556778889998875 9999999998532 233333445555666666666666654

>d2ns9a1 d.129.3.10 (A:10-156) Hypothetical protein APE2225 {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: CoxG-like
domain: Hypothetical protein APE2225
species: Aeropyrum pernix [TaxId: 56636]

Probab=99.61  E-value=8.5e-15  Score=105.10  Aligned_cols=137  Identities=15%  Similarity=0.143  Sum_probs=84.6

Q ss_pred             EEEEEEeCCCHHHHHHHHhccCCcccccccceeEEEecCCCCCCceEEEEeeeecCCCCCCCCCcCccceEEEEEEEEec
Q 030202           19 RACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLAINA   98 (181)
Q Consensus        19 ~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~G~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~~D~   98 (181)
                      +-+++| +||+++||+++.|+.++++|+|.+.++....+..   +........  + ..  +     ..........+++
T Consensus         6 e~si~I-~ap~e~Vw~~l~D~~~~~~w~p~~~~~~~~~~~~---~~~~~~~~~--~-~~--~-----~~~~~~~~~~~~~   71 (147)
T d2ns9a1           6 EGSFEV-SKTPEEVFEFLTDPKRFSRAFPGFKSVEVEDGSF---TIELRLSLG--P-LR--G-----DARVRASFEDLEK   71 (147)
T ss_dssp             EEEEEE-SSCHHHHHHHHTCHHHHGGGSTTEEEEEEETTEE---EEEEEEESS--S-SE--E-----EEEEEEEEEEEET
T ss_pred             EEEEEE-cCCHHHHHHHHhCHhhhhhcccchhheeeccccc---ceeEEEEEE--E-Ee--e-----EeeeeeeeeeecC
Confidence            468899 9999999999999999999999998876543322   212122110  0 00  0     0123344455555


Q ss_pred             CCCeEEEEEee-cccceeeEEEEEEEEEcCCceEEEEEEEEeeC---CCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 030202           99 EEMTLTYSIVD-GNVGFYGYVSTLTVAPKENGCYIEWKYEVEPV---KGWRLEDLDCFISSGLQVMARRMKEALQA  170 (181)
Q Consensus        99 ~~~~~~y~v~~-g~~p~~~~~~t~~v~p~~~gT~v~W~~~~~p~---~~~~~~~~~~~~~~gl~~l~~~le~~~~~  170 (181)
                      . ....+.... ...+...+..++++.|.++||+|+|+.++.+.   ......-+...++..++.+.+.|++.+.+
T Consensus        72 ~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~gt~v~~~~~~~~~g~~~~l~~~~v~~~~~~~~~~~l~~lk~~~~~  146 (147)
T d2ns9a1          72 P-SKATVKGSGRGAGSTLDFTLRFAVEPSGGGSRVSWVFEGNVGGLAASMGGRVLDSLARRMINDVISGVKRELGE  146 (147)
T ss_dssp             T-TEEEEEEEEECSSEEEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSCHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             C-cceeEEEeeeccccceeeEEEEEEEecCCCcEEEEEEEEEeCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3 344433333 33346678899999999999999999999853   22222233444555555555555555544

>d1vjha_ d.129.3.1 (A:) Hypothetical protein At1G24000 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Hypothetical protein At1G24000
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.54  E-value=1.5e-13  Score=98.77  Aligned_cols=108  Identities=14%  Similarity=0.148  Sum_probs=84.4

Q ss_pred             EEEEEEeCCCHHHHHHHHhccCCcccccccceeEEEecCCCCCCceEEEEeeeecCCCCCCCCCcCccceEEEEEEEEec
Q 030202           19 RACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLAINA   98 (181)
Q Consensus        19 ~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~G~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~~D~   98 (181)
                      .+.++| ++|+++.|.++.+...               |+           .               ....+|||.++|+
T Consensus         8 ~~evei-k~~a~kf~~~~~~~~~---------------~~-----------~---------------~~~~KerVe~vD~   45 (120)
T d1vjha_           8 SVKFDV-KCPADKFFSAFVEDTN---------------RP-----------F---------------EKNGKTEIEAVDL   45 (120)
T ss_dssp             EEEEEE-SSCHHHHHHHHHHHTT---------------SC-----------S---------------STTCEEEEEEEET
T ss_pred             EEEEEe-cCCHHHHHHHhhhccC---------------CC-----------C---------------CcccEEEEEEEcC
Confidence            357888 9999999999953221               11           0               0146899999999


Q ss_pred             CCCeEEEEEeeccc--ceeeEEEEEEEEEcCC--ceEEEEEEEEeeCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 030202           99 EEMTLTYSIVDGNV--GFYGYVSTLTVAPKEN--GCYIEWKYEVEPVKGWRLEDLDCFISSGLQVMARRMKEALQA  170 (181)
Q Consensus        99 ~~~~~~y~v~~g~~--p~~~~~~t~~v~p~~~--gT~v~W~~~~~p~~~~~~~~~~~~~~~gl~~l~~~le~~~~~  170 (181)
                      ++++++|++++|++  .++.|..+++++|.++  ||.++|+++|++..+..++.  ..|...+..+.+.|+++++.
T Consensus        46 en~sity~vieGdvl~~yksf~~~i~~~p~~~g~gsi~kwt~eYek~~~~~p~p--~~~~e~~~~~~K~id~yLL~  119 (120)
T d1vjha_          46 VKKTMTIQMSGSEIQKYFKTLKGSIAVTPIGVGDGSHVVWTFHFEKVHKDIDDP--HSIIDESVKYFKKLDEAILN  119 (120)
T ss_dssp             TTTEEEEEEECTTGGGTEEEEEEEEEEEECSSSSCEEEEEEEEEEESSTTSCCS--HHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEEEeeccccceeEEEEEEEEEecCCCCceEEEEEEEEEeCCCCCCCH--HHHHHHHHHHHHHHHHHHhc
Confidence            99999999999996  5899999999999864  79999999999986543322  12456677899999999874

>d1t17a_ d.129.3.6 (A:) Hypothetical protein CC1736 {Caulobacter crescentus [TaxId: 155892]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: oligoketide cyclase/dehydrase-like
domain: Hypothetical protein CC1736
species: Caulobacter crescentus [TaxId: 155892]

Probab=99.45  E-value=1.8e-12  Score=95.08  Aligned_cols=139  Identities=11%  Similarity=0.052  Sum_probs=90.3

Q ss_pred             EEEEEEeCCCHHHHHHHHhccCCcccccccceeEEEecCCCCCCceEEEEeeeecCCCCCCCCCcCccceEEEEEEEEec
Q 030202           19 RACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLAINA   98 (181)
Q Consensus        19 ~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~G~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~~D~   98 (181)
                      .++..| ++||++||+++.|+++||+|+|.+.++++++..+..-+......+...  .+  |  .  ......+. ...+
T Consensus         5 ~~~~vi-~~~~e~vf~vV~Dve~Yp~FlP~c~~~~V~~~~~~~~~~~~~~~~~~~--~~--~--~--~~~~~~~~-~~~~   74 (148)
T d1t17a_           5 VVTKVL-PYTPDQLFELVGDVDAYPKFVPWITGMRTWNGRVDGAVSTVDAEAQVG--FS--F--L--REKFATRV-RRDK   74 (148)
T ss_dssp             EEEEEE-SSCTHHHHHHHTTTTCCSSCCSSCCCCCEEEEEEETTEEEEEEEEECS--TT--S--S--CCEEEEEE-EEET
T ss_pred             eEEEEe-CCCHHHHHHHHHHHHhhhhhccccCccEEEecccccccceeeEEEEEE--ee--e--e--EEEEEEEe-eecC
Confidence            456677 999999999999999999999999998776532211222222221100  11  1  1  11223332 3455


Q ss_pred             CCCeEEEEEeecccceeeEEEEEEEEEcCCceEEEEEEEEeeCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 030202           99 EEMTLTYSIVDGNVGFYGYVSTLTVAPKENGCYIEWKYEVEPVKGWRLEDLDCFISSGLQVMARRMKEALQ  169 (181)
Q Consensus        99 ~~~~~~y~v~~g~~p~~~~~~t~~v~p~~~gT~v~W~~~~~p~~~~~~~~~~~~~~~gl~~l~~~le~~~~  169 (181)
                      .+..+.....+|  |++...+.+++.|.++||+|+|.++|+.........+..+++..++.|.+.+++++.
T Consensus        75 ~~~~~~~~~~~g--~f~~l~~~W~f~~~~~~T~V~~~l~fe~~~~l~~~~~~~~~~~~~~~~i~aF~~Ra~  143 (148)
T d1t17a_          75 DARSIDVSLLYG--PFKRLNNGWRFMPEGDATRVEFVIEFAFKSALLDAMLAANVDRAAGKLIACFEARAQ  143 (148)
T ss_dssp             TTCEEEEEESST--TSSCEEEEEEEEEETTEEEEEEEEEECCSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CceEEEEeccCc--hhhhcccceeeccCCCceEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            566777766655  457778999999999999999999999653222222245567777777777777664

>d2qpva1 d.129.3.8 (A:1-133) Uncharacterized protein Atu1531 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Atu1531-like
domain: Uncharacterized protein Atu1531
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.40  E-value=3.5e-12  Score=92.56  Aligned_cols=122  Identities=14%  Similarity=0.184  Sum_probs=84.0

Q ss_pred             EEEEEEeCCCHHHHHHHHhccCCcccccccceeEEEecCCCCCCceEEEEeeeecCCCCCCCCCcCccceEEEEEEEEec
Q 030202           19 RACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLAINA   98 (181)
Q Consensus        19 ~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~G~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~~D~   98 (181)
                      .++++| ++|+++||++++|+.++|+|+|++.++...++     +..+....   |  .  |       .++-+++... 
T Consensus         8 ~~~i~I-~~p~~~v~~~~~d~~~~p~w~~~l~~~~~~~~-----~~~~~~~~---~--~--G-------~~~~~i~~~~-   66 (133)
T d2qpva1           8 IIHLSV-EKPWAEVYDFAANPGNMPRWAAGLAGGLEADG-----EDWIAKGG---P--L--G-------EVRVNFAPHN-   66 (133)
T ss_dssp             EEEEEE-SSCHHHHHHHHHCGGGGGGTCGGGTTCCEEET-----TEEEEECS---S--S--C-------EEEEEECCCC-
T ss_pred             EEEEEE-CCCHHHHHHHHhChhhcchhhhccceeEEecC-----CcEEEEec---C--C--C-------cEEEEEEEcC-
Confidence            468999 99999999999999999999999988766554     23333321   1  1  2       4666777654 


Q ss_pred             CCCeEEEEEeecccceeeEEEEEEEEEcCCceEEEEEEEEeeCCCCCHHHHH---HHHHHHHHHHHHHHH
Q 030202           99 EEMTLTYSIVDGNVGFYGYVSTLTVAPKENGCYIEWKYEVEPVKGWRLEDLD---CFISSGLQVMARRMK  165 (181)
Q Consensus        99 ~~~~~~y~v~~g~~p~~~~~~t~~v~p~~~gT~v~W~~~~~p~~~~~~~~~~---~~~~~gl~~l~~~le  165 (181)
                      .++.+.|++..++. .. ...+|++.|.++||.+.+++ +.|. +...+.+.   ..++..|+.|++.+|
T Consensus        67 p~~~i~w~~~~~~~-~~-g~v~fr~~~~g~gt~v~~~~-~~pp-g~~~~~~~~~~~~v~~dL~rlK~l~E  132 (133)
T d2qpva1          67 EFGVIDHVVTLPDG-LK-VYNALRVTPNGSGTEVSFTL-LRLE-GMTDEDFEQDASAITADLEMLKSLLE  132 (133)
T ss_dssp             SSCBCCEEEECTTS-CE-EEEEEEEEEETTEEEEEEEE-ECCT-TCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEEecCCC-CE-EEEEEEEccCCCeEEEEEEE-EeCC-CCchHHHHHHHHHHHHHHHHHHHHhc
Confidence            47899999887643 23 34578888888889998887 4443 44544442   345555666666555

>d2pcsa1 d.129.3.10 (A:1-147) Hypothetical protein GKP20 {Geobacillus kaustophilus [TaxId: 1462]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: CoxG-like
domain: Hypothetical protein GKP20
species: Geobacillus kaustophilus [TaxId: 1462]

Probab=99.23  E-value=1.4e-10  Score=83.44  Aligned_cols=140  Identities=13%  Similarity=0.107  Sum_probs=83.8

Q ss_pred             eeEEEEEEeCCCHHHHHHHHhccCCcccccccceeEEEecCCCCCCceEEEEeeeecCCCCCCCCCcCccceEEEEEEEE
Q 030202           17 QGRACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLAI   96 (181)
Q Consensus        17 ~~~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~G~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~~   96 (181)
                      |.+-+++| +||+|+||++|.|..++++++|++.+.+..+++ ...+.++..-+   +...        .-..+.++...
T Consensus         2 n~s~~~~i-~~~~e~v~~~l~D~~~~~~~~Pg~~~~~~~~~~-~~~~~~~~~~g---~~~~--------~~~~~~~~~~~   68 (147)
T d2pcsa1           2 NGNGSIEL-KGTVEEVWSKLMDPSILSKCIMGCKSLELIGED-KYKADLQIGIA---AVKG--------KYDAIIEVTDI   68 (147)
T ss_dssp             EEEEEEEE-ESCHHHHHHHHTCHHHHHHHSTTEEEEEEEETT-EEEEEEEECCG---GGCE--------EEEEEEEEEEE
T ss_pred             CCCceEEe-CCCHHHHHHHHcCHHHHHhhCcchhhceecCCC-EEEEEEEEeec---ceee--------eeEEEEEEecc
Confidence            56778899 999999999999999999999999887766532 11223332211   1000        01344556666


Q ss_pred             ecCCCeEEEEEeecc-cceeeEEEEEEEEEcCC-ceEEEEEEEEeeCC---CCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 030202           97 NAEEMTLTYSIVDGN-VGFYGYVSTLTVAPKEN-GCYIEWKYEVEPVK---GWRLEDLDCFISSGLQVMARRMKEALQA  170 (181)
Q Consensus        97 D~~~~~~~y~v~~g~-~p~~~~~~t~~v~p~~~-gT~v~W~~~~~p~~---~~~~~~~~~~~~~gl~~l~~~le~~~~~  170 (181)
                      ++. ........... .+.....+.+.+.+.++ +|+|+|+++++...   .....-+....+..++.+.+++++.+.+
T Consensus        69 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~T~v~~~~~~~~~g~l~~l~~~li~~~~~~~~~~f~~~~~~~l~~  146 (147)
T d2pcsa1          69 KPP-YHYKLLVNGEGGPGFVNAEGVIDLTPINDECTQLTYTYSAEVGGKVAAIGQRMLGGVAKLLISDFFKKIQKEIAK  146 (147)
T ss_dssp             ETT-TEEEEEEEEEETTEEEEEEEEEEEEESSSSEEEEEEEEEEEEESGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             Ccc-cceeEeeccccccchhcceeEEeeecccCCcEEEEEEEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            654 34343333222 23444555566666554 69999999998532   1222233445555666666666666543

>d1xuva_ d.129.3.5 (A:) Hypothetical protein MM0500 {Methanosarcina mazei [TaxId: 2209]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Hypothetical protein MM0500
species: Methanosarcina mazei [TaxId: 2209]

Probab=99.04  E-value=4.5e-09  Score=77.34  Aligned_cols=140  Identities=10%  Similarity=0.018  Sum_probs=84.3

Q ss_pred             EEEEEEeCCCHHHHHHHHhccCCcccccc-cceeEEEecCCCCCCceEEEEeeeecCCCCCCCCCcCccceEEEEEEEEe
Q 030202           19 RACEELTGVKAEQIWAFLEDFFGLDKWFP-TLTTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLAIN   97 (181)
Q Consensus        19 ~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P-~v~~~~~~~G~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~~D   97 (181)
                      .++.+| +||+++||+++.|...+.+|++ .-..+.....+...-|..+....  .+ +|  +     ...+.-++++++
T Consensus        15 ~i~r~i-~Ap~e~Vw~a~tdpe~l~~W~~p~~~~~~~~~~d~~~gg~~~~~~~--~~-~g--~-----~~~~~g~v~~i~   83 (163)
T d1xuva_          15 IITREF-DAPRELVFKAFTDPDLYTQWIGPRGFTTALKIFEPKNGGSWQYIQK--DP-EG--N-----EYAFHGVNHDVT   83 (163)
T ss_dssp             EEEEEE-SSCHHHHHHHHHCHHHHTTTCSSTTCEEEEEEECCSTTCEEEEEEE--CT-TS--C-----EEEEEEEEEEEE
T ss_pred             EEEEEe-CCCHHHHHHHHcChHHhhhccCCCCccceeeeeeceeCceEEEEEE--ec-CC--C-----ceEEEEEEEEec
Confidence            568889 9999999999999999999985 22233332322221233333321  12 22  1     125778899999


Q ss_pred             cCCCeEEEEEeeccc--ceeeEEEEEEEEEcCCc-eEEEEEEEEeeCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 030202           98 AEEMTLTYSIVDGNV--GFYGYVSTLTVAPKENG-CYIEWKYEVEPVKGWRLEDLDCFISSGLQVMARRMKEALQAY  171 (181)
Q Consensus        98 ~~~~~~~y~v~~g~~--p~~~~~~t~~v~p~~~g-T~v~W~~~~~p~~~~~~~~~~~~~~~gl~~l~~~le~~~~~~  171 (181)
                      + +++++|+..-...  +-.....+++|++.++| |+++++..+..... ....+...+..|.+.+..+|++++++.
T Consensus        84 ~-~~rl~~tw~~~~~~~~~~~~~v~~~~e~~~~g~t~~~~~~~~~~~~~-~~~~~~~g~~~GW~~~L~~L~~~le~~  158 (163)
T d1xuva_          84 E-PERIISTFEFEGLPEKGHVILDTARFEALPGDRTKLTSHSVFQTIED-RDGMLQSGMEEGINDSYERLDELLEKM  158 (163)
T ss_dssp             T-TTEEEEEEEETTSSSSCCCEEEEEEEEEETTTEEEEEEEEECSSHHH-HHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred             C-CCEEEEEEeccCCCCCCCcEEEEEEEEEeCCCcEEEEEEEcCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            8 5678776543322  23345788999998876 88888776653210 111112234566666666677766554

>d2il5a1 d.129.3.5 (A:5-168) Hypothetical protein SA2116 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Hypothetical protein SA2116
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.93  E-value=4.2e-08  Score=72.14  Aligned_cols=140  Identities=14%  Similarity=0.117  Sum_probs=85.2

Q ss_pred             EEEEEEeCCCHHHHHHHHhccCCcccccc-cceeEEEecCCCCCCc-eEEEEeeeecCCCCCCCCCcCccceEEEEEEEE
Q 030202           19 RACEELTGVKAEQIWAFLEDFFGLDKWFP-TLTTCIPIQGISGQPG-CVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLAI   96 (181)
Q Consensus        19 ~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P-~v~~~~~~~G~~~~vG-svR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~~   96 (181)
                      .++..| +||+++||+++.|-..+.+|++ .-..+...+.+ ..+| ..|..-.  .+ .   |   . ...+.-+++++
T Consensus        10 ~ier~i-~Ap~e~Vw~a~tdpe~l~~W~~p~~~~~~~~~~d-~~~Gg~~~~~~~--~~-~---g---~-~~~~~g~v~e~   77 (164)
T d2il5a1          10 EIEKLY-KFSPELVYEAWTKKDLLKQWFMTSARTNKEIEAD-VKEGGKYRIVDQ--QR-N---G---K-VNVIEGIYESL   77 (164)
T ss_dssp             EEEEEE-SSCHHHHHHHTTCHHHHTTTSSSCTTTEEEEEEC-CSTTCEEEEEEE--CG-G---G---C-EEEEEEEEEEE
T ss_pred             EEEEEE-CCCHHHHHHHHcCHHHHhCcccCCCccceEEEee-cccCceEEEEEe--cC-C---c---c-eEEEEEEEEEE
Confidence            456778 9999999999999999999885 22222222222 2344 3333321  11 2   2   1 12567789999


Q ss_pred             ecCCCeEEEEEeecccceeeEEEEEEEEEcC-CceEEEEEEEEeeCCC--CCHHH-------HHHHHHHHHHHHHHHHHH
Q 030202           97 NAEEMTLTYSIVDGNVGFYGYVSTLTVAPKE-NGCYIEWKYEVEPVKG--WRLED-------LDCFISSGLQVMARRMKE  166 (181)
Q Consensus        97 D~~~~~~~y~v~~g~~p~~~~~~t~~v~p~~-~gT~v~W~~~~~p~~~--~~~~~-------~~~~~~~gl~~l~~~le~  166 (181)
                      ++ +++|+|+..-...+-.....++.+.+.+ +||+|+.+.+.-+...  .....       .......|.+.+..+|++
T Consensus        78 ~p-~~~i~~t~~~~~~~~~~~~~~~~~~e~~~ggT~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gw~~~l~~L~~  156 (164)
T d2il5a1          78 VM-DEYVKMTIGMPGLSETQDVIEVEFFERETGGTQMLFYYRSLVEKERRFTNLEYKQKKKEYHDAMVHGFELMFDKMYH  156 (164)
T ss_dssp             ET-TTEEEEEESCC--CCCCEEEEEEEEECSSSSEEEEEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cC-CCEEEEEEeccCCCCCceEEEEEEEEcCCCCEEEEEEEeecChhHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            98 6788887532222222234556665554 5799999988765432  22221       123466788888888888


Q ss_pred             HHhhh
Q 030202          167 ALQAY  171 (181)
Q Consensus       167 ~~~~~  171 (181)
                      +++++
T Consensus       157 ~lE~g  161 (164)
T d2il5a1         157 VIETS  161 (164)
T ss_dssp             HHHTT
T ss_pred             HHhcc
Confidence            88775

>d1z94a1 d.129.3.5 (A:2-144) Hypothetical protein CV1439 {Chromobacterium violaceum [TaxId: 536]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Hypothetical protein CV1439
species: Chromobacterium violaceum [TaxId: 536]

Probab=98.85  E-value=6.9e-08  Score=69.20  Aligned_cols=133  Identities=18%  Similarity=0.199  Sum_probs=78.0

Q ss_pred             EEEEEEeCCCHHHHHHHHhccCCcccccc-cceeEEEecCCCCCCce-EEEEeeeecCCCCCCCCCcCccceEEEEEEEE
Q 030202           19 RACEELTGVKAEQIWAFLEDFFGLDKWFP-TLTTCIPIQGISGQPGC-VRFCAGFKTPVDNKDDDHEQSVNWTKQKLLAI   96 (181)
Q Consensus        19 ~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P-~v~~~~~~~G~~~~vGs-vR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~~   96 (181)
                      +++.+| +||+++||+++.|-..+.+|++ .-..+....++ -.+|. .|.... ..+ +   |   . ...+.-+++++
T Consensus         5 ~~~r~i-~ap~e~Vw~a~Tdp~~~~~W~~p~~~~~~~~~~d-~~~Gg~~~~~~~-~~~-~---g---~-~~~~~g~v~~~   73 (143)
T d1z94a1           5 RLHRVL-SAPPERVYRAFLDPLALAKWLPPEGFVCKVLEHD-ARVGGAYKMEFL-AFA-S---G---Q-KHAFGGRYLEL   73 (143)
T ss_dssp             EEEEEE-SSCHHHHHHHTTCHHHHHHHSSCTTEEEEEEEEC-CSTTCEEEEEEE-ETT-T---C---C-EEEEEEEEEEE
T ss_pred             EEEEEE-CCCHHHHHHHhcCHHHHhhhhCCCCccceeEeec-cccceeEEEEEe-eCC-C---C---c-EEEEEEEEEEe
Confidence            467788 9999999999999999999985 32233333332 23453 333321 112 2   3   1 12466789999


Q ss_pred             ecCCCeEEEEEeecccc-eeeEEEEEEEEEcCCceEEEEEEEEeeCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 030202           97 NAEEMTLTYSIVDGNVG-FYGYVSTLTVAPKENGCYIEWKYEVEPVKGWRLEDLDCFISSGLQVMARRMKEAL  168 (181)
Q Consensus        97 D~~~~~~~y~v~~g~~p-~~~~~~t~~v~p~~~gT~v~W~~~~~p~~~~~~~~~~~~~~~gl~~l~~~le~~~  168 (181)
                      ++ ++++.|+-...... -.....+++|.+.++||+|+.+..--|. ......    +..|...+..+|++++
T Consensus        74 ~p-~~~i~~t~~~~~~~~~~~~~v~~~l~~~~~gT~lt~~~~~~~~-~~~~~~----~~~GW~~~l~~L~~~l  140 (143)
T d1z94a1          74 VP-GERIRYTDRFDDAGLPGDMITTITLAPLSCGADLSIVQEGIPD-AIPPEN----CYLGWQQSLKQLAALV  140 (143)
T ss_dssp             ET-TTEEEEEEEESCCC---CEEEEEEEEEETTEEEEEEEEECCCT-TSCHHH----HHHHHHHHHHHHHHHH
T ss_pred             cC-CeEEEEEEeccCCCCCCcEEEEEEEEEcCCCEEEEEEEEcCCC-hhHHHH----HHHHHHHHHHHHHHHH
Confidence            98 56787775432221 1234678999999999998876543332 122232    3344444445555554

>d1xfsa_ d.129.3.5 (A:) Hypothetical protein NE0264 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Hypothetical protein NE0264
species: Nitrosomonas europaea [TaxId: 915]

Probab=98.80  E-value=4.9e-08  Score=71.81  Aligned_cols=137  Identities=15%  Similarity=0.120  Sum_probs=80.1

Q ss_pred             EEEEEEeCCCHHHHHHHHhccCCcccccc-cceeEEEecCCCCCCc-eEEEEeeeecCCCCCCCCCcCccceEEEEEEEE
Q 030202           19 RACEELTGVKAEQIWAFLEDFFGLDKWFP-TLTTCIPIQGISGQPG-CVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLAI   96 (181)
Q Consensus        19 ~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P-~v~~~~~~~G~~~~vG-svR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~~   96 (181)
                      .++.+| +||+++||+++.|-..+.+|+. .--.+...+++ -.+| ..+....  .| +   |  .  .....-+++++
T Consensus         8 ~i~r~i-~ap~e~Vw~a~tdpe~~~~W~~p~~~~~~~~~~d-~~~GG~~~~~~~--~~-~---g--~--~~~~~g~v~ei   75 (165)
T d1xfsa_           8 MLKREL-AVPVNLVWRGLTEPELLKKWFVPKPWSISDCRVD-LRPGGEFYTVMQ--DP-E---G--N--KFPNSGCFLEV   75 (165)
T ss_dssp             EEEEEE-SSCHHHHHHHHHCHHHHTTTSSCTTCEEEEEEEC-CSTTCEEEEEEE--CT-T---C--C--EEEEEEEEEEE
T ss_pred             EEEEEE-cCCHHHHHHHHcCHHHHhhcCCCCCccceeeccc-ceeCceEEEEEE--CC-C---C--c--eeeEEEEEEEe
Confidence            578889 9999999999999999999973 22222222322 2233 3333321  12 2   3  1  12456789999


Q ss_pred             ecCCCeEEEEEee--c------------ccceeeEEEEEEEEEcCCceEEEEEEEEeeCCCCCHHHH-HHHHHHHHHHHH
Q 030202           97 NAEEMTLTYSIVD--G------------NVGFYGYVSTLTVAPKENGCYIEWKYEVEPVKGWRLEDL-DCFISSGLQVMA  161 (181)
Q Consensus        97 D~~~~~~~y~v~~--g------------~~p~~~~~~t~~v~p~~~gT~v~W~~~~~p~~~~~~~~~-~~~~~~gl~~l~  161 (181)
                      ++ ++++.|+-.-  .            ..+......++.|++.++||+|+.+..+.+..  ..+.. ...+..|.+.+.
T Consensus        76 ~p-~~rl~~t~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~gT~lt~~~~~~~~~--~~~~~~~~g~~~GW~~~l  152 (165)
T d1xfsa_          76 TD-EKRLIWTSALVKNYRPAVPATTSDKECAHIVMTAVIELQPTSSGTRYTACAMHNTPG--QRKLHEEMGFHEGWGTTI  152 (165)
T ss_dssp             ET-TTEEEEESSEEGGGEECCC-----------CCEEEEEEEECSSSEEEEEEEECSSHH--HHHHHHTTTHHHHHHHHH
T ss_pred             cC-CcEEEEEEeecccccccccccccccCCCCccEEEEEEEEEcCCcEEEEEEEEcCCHH--HHHHHHHHHHHHHHHHHH
Confidence            98 5788876421  0            11122346789999999999999876544221  11111 111455666666


Q ss_pred             HHHHHHHhh
Q 030202          162 RRMKEALQA  170 (181)
Q Consensus       162 ~~le~~~~~  170 (181)
                      .+|+++|.+
T Consensus       153 ~~L~~~le~  161 (165)
T d1xfsa_         153 TQLEELLKQ  161 (165)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            666666654

>d1xn5a_ d.129.3.5 (A:) Hypothetical protein BH1534 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Hypothetical protein BH1534
species: Bacillus halodurans [TaxId: 86665]

Probab=98.73  E-value=1.6e-07  Score=66.99  Aligned_cols=92  Identities=14%  Similarity=0.220  Sum_probs=65.6

Q ss_pred             EEEEEEeCCCHHHHHHHHhccCCcccccccceeEEEecCCCCCCceEEEEeeeecCCCCCCCCCcCccceEEEEEEEEec
Q 030202           19 RACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLAINA   98 (181)
Q Consensus        19 ~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~G~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~~D~   98 (181)
                      ..++.| +||+++||+++.|...+.+|++...   .    ..++|..-.+..     .+  +       .+.=+++++++
T Consensus         8 ~~~~~i-~ap~e~Vw~alt~p~~~~~W~~~~~---~----~~~~g~~~~~~~-----~~--~-------~~~g~v~~~~~   65 (138)
T d1xn5a_           8 KKEVRF-NAPIEKVWEAVSTSEGLAFWFMEND---L----KAETGHHFHLQS-----PF--G-------PSPCQVTDVER   65 (138)
T ss_dssp             EEEEEE-SSCHHHHHHHTTSHHHHHTTSCCBC---C----CSCTTCEEEEEC-----SS--C-------EEEEEEEEEET
T ss_pred             EEEEEE-CCCHHHHHHHHcCHHHhceEccCCc---c----cccceeeEEecC-----Cc--c-------ceeEEEEEEeC
Confidence            468889 9999999999999999999997421   1    112343333332     11  2       45668899998


Q ss_pred             CCCeEEEEEeecccceeeEEEEEEEEEcCCceEEEEEEEE
Q 030202           99 EEMTLTYSIVDGNVGFYGYVSTLTVAPKENGCYIEWKYEV  138 (181)
Q Consensus        99 ~~~~~~y~v~~g~~p~~~~~~t~~v~p~~~gT~v~W~~~~  138 (181)
                       +++|.|+....     ....+++|.|.++||+|+.+..-
T Consensus        66 -~~~l~~~~~~~-----~~~v~~~l~~~~~gT~lt~~~~g   99 (138)
T d1xn5a_          66 -PIKLSFTWDTD-----GWSVTFHLKEEENGTIFTIVHSG   99 (138)
T ss_dssp             -TTEEEEEETTT-----TEEEEEEEEECSSSEEEEEEEEC
T ss_pred             -CcEEEEEecCC-----CeEEEEEEEEcCCcEEEEEEEec
Confidence             67999985432     24678999999999999987654

>d2nn5a1 d.129.3.5 (A:1-160) Hypothetical protein EF2215 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Hypothetical protein EF2215
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.72  E-value=2.4e-07  Score=68.71  Aligned_cols=93  Identities=15%  Similarity=0.225  Sum_probs=65.0

Q ss_pred             EEEEEEeCCCHHHHHHHHhccCCcccccccceeEEEecCCCCCCceEEEEeeeecCCCCCCCCCcCccceEEEEEEEEec
Q 030202           19 RACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLAINA   98 (181)
Q Consensus        19 ~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~G~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~~D~   98 (181)
                      .+++.| +||+++||++|.|-..+.+|++.........|     |.++..-      .+  +       ...-+++++++
T Consensus        15 ~~er~i-~ap~e~Vw~AlTdpe~l~~W~~~~~~~d~~~G-----G~~~~~~------~~--~-------~~~~~v~~~ep   73 (160)
T d2nn5a1          15 GTERAI-SASPQTIWRYLTETDKLKQWFPELEIGELGVN-----GFWRFIL------PD--F-------EETMPFTDYAE   73 (160)
T ss_dssp             EEEEEE-SSCHHHHHHHHHCHHHHHHHCTTEEEEECSTT-----CEEEEEE------TT--E-------EEEEEEEEEET
T ss_pred             EEEEEe-cCCHHHHHHHHcCHHHHHhhCCCCCcccccCC-----CeeEEEc------CC--C-------CcceEEEEEec
Confidence            357788 99999999999999999999986432222112     4555442      12  2       35667899997


Q ss_pred             CCCeEEEEEeecccceeeEEEEEEEEEcCC-ceEEEEEEEEee
Q 030202           99 EEMTLTYSIVDGNVGFYGYVSTLTVAPKEN-GCYIEWKYEVEP  140 (181)
Q Consensus        99 ~~~~~~y~v~~g~~p~~~~~~t~~v~p~~~-gT~v~W~~~~~p  140 (181)
                       ++++.|+-.++       ..+++|+|.++ +|+++-+-...+
T Consensus        74 -p~rL~~tW~~~-------~v~~eL~~~~~~~t~l~l~~~~~~  108 (160)
T d2nn5a1          74 -EKYLGVTWDTG-------IIYFDLKEQAPHQTLLVFSESLPE  108 (160)
T ss_dssp             -TTEEEEEETTE-------EEEEEEEEEETTEEEEEEEEEECT
T ss_pred             -CCEEEEEecCc-------eEEEEEecCCCCeEEEEEEEecCc
Confidence             78999875322       45789988755 588887766543

>d3elia1 d.129.3.5 (A:2-144) Uncharacterized protein SPO3351 {Silicibacter pomeroyi [TaxId: 89184]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Uncharacterized protein SPO3351
species: Silicibacter pomeroyi [TaxId: 89184]

Probab=98.57  E-value=1e-06  Score=62.73  Aligned_cols=133  Identities=12%  Similarity=0.062  Sum_probs=77.1

Q ss_pred             EEEEEEeCCCHHHHHHHHhccCCcccccc-cceeEEEecCC-CCCCc-eEEEEeeeecCCCCCCCCCcCccceEEEEEEE
Q 030202           19 RACEELTGVKAEQIWAFLEDFFGLDKWFP-TLTTCIPIQGI-SGQPG-CVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLA   95 (181)
Q Consensus        19 ~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P-~v~~~~~~~G~-~~~vG-svR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~   95 (181)
                      +++.+| +||+++||+++.|-..+.+|++ .-..+...... .-.+| .-+....  .+ +   |  .  ...+.-++++
T Consensus         4 ~i~r~i-~a~~e~Vw~a~tdp~~l~~W~~~~~~~~~~~~~~~~~~~gg~~~~~~~--~~-~---g--~--~~~~~g~v~~   72 (143)
T d3elia1           4 RLEREF-AVAPEALFAWVSDGAKLLQWWGPEGLHVPADQHDLDFTRLGPWFSVMV--NG-E---G--Q--RYKVSGQVTH   72 (143)
T ss_dssp             EEEEEE-SSCHHHHHHHTTCHHHHHHHCSSTTCBCCTTSBCCCCSSSEEEEEEEE--CT-T---C--C--EEEEEEEEEE
T ss_pred             EEEEEE-CCCHHHHHHHhcCHHHHhhhcCCCCceeeeeeEEEeeccCccEEEEEE--CC-C---C--c--EEEEEEEEEE
Confidence            467889 9999999999999999989984 22222111111 11233 2333321  11 2   3  1  1246678999


Q ss_pred             EecCCCeEEEE--Eeeccc-ceeeEEEEEEEEEcCCceEEEEEEEEeeCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 030202           96 INAEEMTLTYS--IVDGNV-GFYGYVSTLTVAPKENGCYIEWKYEVEPVKGWRLEDLDCFISSGLQVMARRMKEAL  168 (181)
Q Consensus        96 ~D~~~~~~~y~--v~~g~~-p~~~~~~t~~v~p~~~gT~v~W~~~~~p~~~~~~~~~~~~~~~gl~~l~~~le~~~  168 (181)
                      +++. +++.|+  ....+. +-.....+++|+|.++||+++.+..  ..   ...........|.+.+..+|++++
T Consensus        73 ~~p~-~rl~~t~~~~~~~~~~~~~~~vt~~l~~~~~gT~l~~~~~--~~---~~~~~~~~~~~GW~~~L~~L~~~l  142 (143)
T d3elia1          73 VKPP-QSVGFTWGWHDDDDRRGAESHVMFIVEPCAKGARLILDHR--EL---GDDEMSLRHEEGWTSSLRKLAAEL  142 (143)
T ss_dssp             EETT-TEEEEEEEEECTTSCEEEEEEEEEECCBC--CEEEEEEEE--SC---SCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCC-CEEEEEEeecCCCCCCCCcEEEEEEEEEcCCCEEEEEEEE--cC---CCHHHHHHHHHHHHHHHHHHHHHh
Confidence            9984 566554  343222 1123456788889888999987643  11   112234456777777778888776

>d1xn6a_ d.129.3.5 (A:) Hypothetical protein BC4709 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Hypothetical protein BC4709
species: Bacillus cereus [TaxId: 1396]

Probab=98.53  E-value=9e-07  Score=63.73  Aligned_cols=122  Identities=13%  Similarity=0.180  Sum_probs=75.5

Q ss_pred             EEEEEEeCCCHHHHHHHHhccCCcccccccceeEEEecCCCCCCceEEEEeeeecCCCCCCCCCcCccceEEEEEEEEec
Q 030202           19 RACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLAINA   98 (181)
Q Consensus        19 ~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~G~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~~D~   98 (181)
                      ..++.| +||+++||+++.|-..+.+|++..   .. +   -.+|..-.+.+   + +   |       .+.-+++++++
T Consensus        11 ~~~~~i-~ap~e~Vw~alTdp~~l~~W~~~~---~~-~---~~~G~~~~~~~---~-~---g-------~~~g~v~~~~p   68 (143)
T d1xn6a_          11 KQTIVF-NASIQKVWSVVSTAEGIASWFMPN---DF-V---LEVGHEFHVQS---P-F---G-------PSPCKVLEIDE   68 (143)
T ss_dssp             EEEEEE-SSCHHHHHHTTSCSHHHHTTSCCB---CC-C---CCTTCEECBCC---T-T---C-------CCCEEEEEEET
T ss_pred             EEEEEE-CCCHHHHHHHhcChHHhceEeecc---Cc-c---cccCceEEEec---c-c---c-------ceeEEEEEEeC
Confidence            457888 999999999999999999998632   11 1   12343222221   1 1   3       23457889988


Q ss_pred             CCCeEEEEEeecccceeeEEEEEEEEEcCCc-eEEEEEEE-EeeCC------CCCHHHHHHHHHHHHHHHH-HHHHHHH
Q 030202           99 EEMTLTYSIVDGNVGFYGYVSTLTVAPKENG-CYIEWKYE-VEPVK------GWRLEDLDCFISSGLQVMA-RRMKEAL  168 (181)
Q Consensus        99 ~~~~~~y~v~~g~~p~~~~~~t~~v~p~~~g-T~v~W~~~-~~p~~------~~~~~~~~~~~~~gl~~l~-~~le~~~  168 (181)
                       ++++.|+--..     +...+++|++.++| |+|+.+-. +.+..      +.........+..|-..+. +.|++++
T Consensus        69 -~~~l~~tw~~~-----~~~v~~~l~~~~~G~T~l~l~h~g~~~~~~~~~~~~~~~~~~~~~~~~GW~~~l~~~Lk~~l  141 (143)
T d1xn6a_          69 -PNHLSFSWDTD-----GWVVSFDLKDLGDNKTEFTLIHGGWKHPDEILPKANAKSSIIRDRMSGGWVAIVNEKLKKVV  141 (143)
T ss_dssp             -TTEEEEEETTT-----TEEEEEEEEEEETTEEEEEEEEECCCSTTCBCTTTCSBHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred             -CcEEEEEEcCC-----CcEEEEEEEEcCCCcEEEEEEEeCCCCchhhhhhcchhhHHHHHHHhhCHHHHHHHHHHHHh
Confidence             67899885322     24578899998775 99987644 33321      1223333445666655443 4666665

>d1zxfa1 d.129.3.5 (A:1-155) Calicheamicin gene cluster protein CalC {Micromonospora echinospora [TaxId: 1877]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Calicheamicin gene cluster protein CalC
species: Micromonospora echinospora [TaxId: 1877]

Probab=98.37  E-value=9e-07  Score=64.10  Aligned_cols=99  Identities=11%  Similarity=0.088  Sum_probs=59.5

Q ss_pred             EEEEEEeCCCHHHHHHHHhccCCcccccccc-e-----eEEEecCCCCCCceEEEEeeeecCCCCCCCCCcCccceEEEE
Q 030202           19 RACEELTGVKAEQIWAFLEDFFGLDKWFPTL-T-----TCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQK   92 (181)
Q Consensus        19 ~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v-~-----~~~~~~G~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~Er   92 (181)
                      +.+++| +||+++||+++.|  .+.+|+|.- .     ......+.   -|..+...    + +   |  ..   .+.=+
T Consensus         7 ~~~~~i-~Ap~e~Vf~a~te--~~~~Ww~~~~~~~~~~~~~~~~~~---gG~~~~~~----~-d---G--~~---~~~g~   67 (155)
T d1zxfa1           7 RHSVTV-KADRKTAFKTFLE--GFPEWWPNNFRTTKVGAPLGVDKK---GGRWYEID----E-Q---G--EE---HTFGL   67 (155)
T ss_dssp             EEEEEE-SSHHHHHHHHHTT--CSSSSSSGGGSTTTTCSSCEEETT---TTEEECCC----T-T---T--SC---CCCEE
T ss_pred             EEEEEE-eCCHHHHHHHHHh--hhHhhcCCCCCCceEEEEEEeeCC---CceEEEEc----c-c---c--ce---eeeEE
Confidence            468889 9999999999986  578888531 1     12222121   13333221    2 2   3  11   23457


Q ss_pred             EEEEecCCCeEEEEEeeccc----ceeeEEEEEEEEEcCC-ceEEEEEEE
Q 030202           93 LLAINAEEMTLTYSIVDGNV----GFYGYVSTLTVAPKEN-GCYIEWKYE  137 (181)
Q Consensus        93 l~~~D~~~~~~~y~v~~g~~----p~~~~~~t~~v~p~~~-gT~v~W~~~  137 (181)
                      ++++++ .+++.|+-..+..    +-.....++.|++.++ +|+|+-+-.
T Consensus        68 v~ei~p-~~rl~~tw~~~~~~~~~~~~~s~v~~~~~~~~~~~T~ltl~h~  116 (155)
T d1zxfa1          68 IRKVDE-PDTLVIGWRLNGFGRIDPDNSSEFTVTFVADGQKKTRVDVEHT  116 (155)
T ss_dssp             EEEEET-TTEEEEECCCSSSSSCCCSSCCCEEEEEEEETTTEEEEEEEEC
T ss_pred             EEEEec-CcEEEEEEecCCccccccccceEEEEEEEecCCCCEEEEEEEe
Confidence            899988 5788887433221    1223456888998875 698887643

>d1x53a1 d.129.3.5 (A:8-139) Activator of 90 kda heat shock protein ATPase homolog 1, AHSA1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Activator of 90 kda heat shock protein ATPase homolog 1, AHSA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.07  E-value=6.2e-06  Score=58.63  Aligned_cols=118  Identities=13%  Similarity=0.053  Sum_probs=71.2

Q ss_pred             EEEEEEeCCCHHHHHHHHhccCCcccccccceeEEEecCCCCCCc-eEEEEeeeecCCCCCCCCCcCccceEEEEEEEEe
Q 030202           19 RACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPG-CVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLAIN   97 (181)
Q Consensus        19 ~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~G~~~~vG-svR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~~D   97 (181)
                      .++.+| +||+++||+++.|-..+.+|+..-...+.      .+| ..+.+       +   |       .+.=++++++
T Consensus         7 ~~~r~~-~ap~e~Vw~a~tdpe~l~~W~~~~~~~d~------~~Gg~f~~~-------~---g-------~~~G~~~ev~   62 (132)
T d1x53a1           7 TLKETF-LTSPEELYRVFTTQELVQAFTHAPATLEA------DRGGKFHMV-------D---G-------NVSGEFTDLV   62 (132)
T ss_dssp             EEEEEE-SSCHHHHHHHTTCHHHHHHHSCSCCBCCC------STTCCCBBT-------T---T-------TEECCEEEEE
T ss_pred             EEEEEE-CCCHHHHHHHHcCHHHHHhhhCCcccccc------ccCCEEEEE-------e---c-------ceeEEEEEEe
Confidence            568889 99999999999999999999843222221      222 22221       1   2       2444578888


Q ss_pred             cCCCeEE--EEEeecccceeeEEEEEEEEEcCCceEEEEEEEEeeCCCCCHHHHHHHHHHHHHH-HHHHHHHHH
Q 030202           98 AEEMTLT--YSIVDGNVGFYGYVSTLTVAPKENGCYIEWKYEVEPVKGWRLEDLDCFISSGLQV-MARRMKEAL  168 (181)
Q Consensus        98 ~~~~~~~--y~v~~g~~p~~~~~~t~~v~p~~~gT~v~W~~~~~p~~~~~~~~~~~~~~~gl~~-l~~~le~~~  168 (181)
                      +. +++.  |+..+.+.+ .....++.|++.+++|+|+.+-..-|..      -...++.|-+. +..+|++++
T Consensus        63 p~-~rlv~tw~~~~~~~~-~~s~vt~~l~~~~~~T~l~l~~~g~p~~------~~e~~~~GW~~~~~~~lk~~f  128 (132)
T d1x53a1          63 PE-KHIVMKWRFKSWPEG-HFATITLTFIDKNGETELCMEGRGIPAP------EEERTRQGWQRYYFEGIKQTF  128 (132)
T ss_dssp             TT-TEEEEEEEETTSCTT-CCEEEEEECCBCSSCEEEEEEEEEEEHH------HHHHHHHTTHHHHHHHHHHHT
T ss_pred             CC-CEEEEEEecCCCCCC-CcEEEEEEEEECCCcEEEEEEEECCCcc------hHHHHHhhHHHHHHHHHHHHc
Confidence            84 4555  444443322 1235688888988889999987755531      12234445432 455555543

>d2k5ga1 d.129.3.5 (A:1-183) Uncharacterized protein BPP1335 {Bordetella parapertussis [TaxId: 519]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Uncharacterized protein BPP1335
species: Bordetella parapertussis [TaxId: 519]

Probab=98.06  E-value=1.6e-05  Score=59.11  Aligned_cols=103  Identities=15%  Similarity=0.116  Sum_probs=64.4

Q ss_pred             eEEEEEEeCCCHHHHHHHHhccCCcccccccceeEEEecCCCCCCc-eEEEEeee----------ecCCCCCCCCCcCcc
Q 030202           18 GRACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPG-CVRFCAGF----------KTPVDNKDDDHEQSV   86 (181)
Q Consensus        18 ~~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~G~~~~vG-svR~~~~~----------~~~~~g~~G~~~~~~   86 (181)
                      =+++..| +||+++||+++.|-..+.+|+... ....      .+| ..+.....          .....+  +     .
T Consensus        21 l~~er~~-~Ap~e~VW~AlTdpe~l~~W~~p~-~~d~------~~Gg~~~~~~~~~~~~~~~~~~~~~~~~--~-----~   85 (183)
T d2k5ga1          21 IRFERLL-PGPIERVWAWLADADKRARWLAGG-ELPR------QPGQTFELHFNHAALTAETAPARYAQYD--R-----P   85 (183)
T ss_dssp             EEEEEEE-SSSSHHHHHHHHCHHHHTTTSCCC-CCCS------STTCEEEEEECGGGSCCSSCCSSCSGGG--S-----C
T ss_pred             EEEEEEe-CCCHHHHHHHHhChHHHhhhcCCC-Cccc------cCCCEEEEEecCCCCcccccccccccCC--C-----c
Confidence            3567888 999999999999999999998532 1111      112 22222110          000000  0     1


Q ss_pred             ceEEEEEEEEecCCCeEEEEEeecccceeeEEEEEEEEEcCCceEEEEEEE
Q 030202           87 NWTKQKLLAINAEEMTLTYSIVDGNVGFYGYVSTLTVAPKENGCYIEWKYE  137 (181)
Q Consensus        87 ~~~~Erl~~~D~~~~~~~y~v~~g~~p~~~~~~t~~v~p~~~gT~v~W~~~  137 (181)
                      ..+.-+++++++ .++++|+...+... ..-..+++|.+.++||+++-+-.
T Consensus        86 ~~~~g~v~~~~p-~~rl~~tw~~~~~~-~~s~v~~~l~~~g~gT~ltl~~~  134 (183)
T d2k5ga1          86 IVARHTLLRCEP-PRVLALTWGGGAGE-APSEVLFELSEAGEQVRLVLTHT  134 (183)
T ss_dssp             EEEEEEEEEEET-TTEEEEECCCCSSS-SCCEEEEEEEECSSSEEEEEEEE
T ss_pred             eeEEEEEEEEeC-CeEEEEEeccCCCC-CcEEEEEEEEEcCCcEEEEEEEe
Confidence            146778999998 67899886654322 12356889999999999976543

>d1jssa_ d.129.3.2 (A:) Cholesterol-regulated Start protein 4 (Stard4). {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: STAR domain
domain: Cholesterol-regulated Start protein 4 (Stard4).
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.79  E-value=0.001  Score=49.16  Aligned_cols=140  Identities=9%  Similarity=0.009  Sum_probs=80.4

Q ss_pred             eEEEEEEeCCCHHHHHHHHhccCCcccccccceeEEEecCCCCCCce-EEEEeeee-cC-CCCCCCCCcCccceEEEEEE
Q 030202           18 GRACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGC-VRFCAGFK-TP-VDNKDDDHEQSVNWTKQKLL   94 (181)
Q Consensus        18 ~~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~G~~~~vGs-vR~~~~~~-~~-~~g~~G~~~~~~~~~~Erl~   94 (181)
                      =+++.+| ++|+++|++++.|....++|.|.+..++.++.-+.. .. +..+.... .| ..+        ...+.-+..
T Consensus        46 ~r~~~~i-~~~~~~v~~~l~d~~~~~~Wd~~~~~~~~le~~~~~-~~i~~~~~~~~~~~~v~~--------RD~v~~~~~  115 (199)
T d1jssa_          46 YKAQGVM-DDVVNNVIDHIRPGPWRLDWDRLMTSLDVLEHFEEN-CCVMRYTTAGQLLNIISP--------REFVDFSYT  115 (199)
T ss_dssp             EEEEEEE-SSCHHHHHHHHSSSTTHHHHCSSEEEEEEEEECSTT-EEEEEEEECCBTTTTBCC--------EEEEEEEEE
T ss_pred             EEEEEEe-CCCHHHHHHHHhChhhhhhcccchheEEEEEEcCCC-cEEEEEEEcccCCCCcCC--------cEEEEEEEE
Confidence            4667788 999999999999999999999999999887632111 12 22222100 11 011        012222222


Q ss_pred             EEecCCCeEEEEEeeccc------ceeeEEEEEEEEEcCC---ceEEEEEEEEeeCCCCCHHHHH-HHHHHHHHHHHHHH
Q 030202           95 AINAEEMTLTYSIVDGNV------GFYGYVSTLTVAPKEN---GCYIEWKYEVEPVKGWRLEDLD-CFISSGLQVMARRM  164 (181)
Q Consensus        95 ~~D~~~~~~~y~v~~g~~------p~~~~~~t~~v~p~~~---gT~v~W~~~~~p~~~~~~~~~~-~~~~~gl~~l~~~l  164 (181)
                      .-++....++........      ....+.+-+.++|.++   +|+|+|....+|.+ ..|.-+. .++...+-...+.|
T Consensus       116 ~~~~~~~~~~~~~~~~~p~~~~~VR~~~~~~~~~i~p~~~~~~~t~vt~~~~~Dp~G-~iP~~lvn~~~~~~~~~~~~~L  194 (199)
T d1jssa_         116 VGYEEGLLSCGVSVEWSETRPEFVRGYNHPCGWFCVPLKDSPSQSLLTGYIQTDLRG-MIPQSAVDTAMASTLANFYSDL  194 (199)
T ss_dssp             EEETTEEEEEEEECCCCCCCTTSEECEECSEEEEEEEETTEEEEEEEEEEECEECCS-CCCHHHHHHHHHHHHHHHHHHH
T ss_pred             EEcCCcEEEEEEecCCCCCCCceEEEEEeeeeEEEEEcCCCCCcEEEEEEEEcCCCC-CCcHHHHHHHHHHHHHHHHHHH
Confidence            233322222222222211      1334557788899865   49999999999974 4554443 34555555666666


Q ss_pred             HHHH
Q 030202          165 KEAL  168 (181)
Q Consensus       165 e~~~  168 (181)
                      ++++
T Consensus       195 r~~l  198 (199)
T d1jssa_         195 RKGL  198 (199)
T ss_dssp             HHHT
T ss_pred             HHhc
Confidence            6554

>d1em2a_ d.129.3.2 (A:) Lipid transport domain of Mln64 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: STAR domain
domain: Lipid transport domain of Mln64
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.57  E-value=0.0023  Score=47.59  Aligned_cols=142  Identities=9%  Similarity=0.020  Sum_probs=80.3

Q ss_pred             EEEEEEeCCCHHHHHH-HHhccCCcccccccceeEEEecCCCCCCceEEEEeeeecCCCCCCCCCcCccceEEEEEEEEe
Q 030202           19 RACEELTGVKAEQIWA-FLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLAIN   97 (181)
Q Consensus        19 ~v~~~I~~Ap~e~VW~-~l~Df~~~~~w~P~v~~~~~~~G~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~~D   97 (181)
                      +++.+| ++|+++|+. ++.|.+..++|.|.+..++.++--+..---+..+.....|     ++ ......+.-+-...+
T Consensus        55 k~~~~i-~~~~~~v~~~~~~d~e~~~~Wd~~~~~~~ile~~~~~~~i~~~~~~~~~~-----~~-vs~RD~v~~~~~~~~  127 (214)
T d1em2a_          55 ILKTFL-PCPAELVYQEVILQPERMVLWNKTVTACQILQRVEDNTLISYDVSAGAAG-----GV-VSPRDFVNVRRIERR  127 (214)
T ss_dssp             EEEEEE-SSCHHHHHHHTTTCHHHHTTTCTTEEEEEEEEEETTTEEEEEEEECCBTT-----TT-BCCEEEEEEEEEEEC
T ss_pred             EEEEEE-eCCHHHHHHHHHhChHHHHHHHHHHhheEEEEEcCCCceEEEEEecccCC-----CC-CCCcEEEEEEEEEEc
Confidence            667788 999999986 7789999999999999988875211111112222211111     00 000114444444455


Q ss_pred             cCCCeEEEEEeecc-c-------ceeeEEEEEEEEEcCC---ceEEEEEEEEeeCCCCCHHHHHH-HHHHHHHHHHHHHH
Q 030202           98 AEEMTLTYSIVDGN-V-------GFYGYVSTLTVAPKEN---GCYIEWKYEVEPVKGWRLEDLDC-FISSGLQVMARRMK  165 (181)
Q Consensus        98 ~~~~~~~y~v~~g~-~-------p~~~~~~t~~v~p~~~---gT~v~W~~~~~p~~~~~~~~~~~-~~~~gl~~l~~~le  165 (181)
                      ++...+....+..+ .       ....+.+.+.++|.++   +|+|+|....+|.+ ..|.-+.+ ++..++-.+.+.|+
T Consensus       128 ~~~~~~~~~s~~~~~~p~~~~~vR~~~~~~~~~i~p~~~~~~~t~vt~~~~~Dp~G-~iP~~lvn~~~~~~~~~~~~~Lr  206 (214)
T d1em2a_         128 RDRYLSSGIATSHSAKPPTHKYVRGENGPGGMIVLKSASNPRVCTFVWILNTDLKG-RLPRYLIHQSLAATMFEFAFHLR  206 (214)
T ss_dssp             SSEEEEEEEECCCTTSCCCTTSEECEECSEEEEEEECSSCTTCEEEEEEECEECCS-SSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcEEEEEEeeccccccCCCCeEEEEEEeeeEEEEECCCCCCeEEEEEEEEeCCCC-CCCHHHHHHHHHHhHHHHHHHHH
Confidence            54444444333322 1       1234556777888653   49999999999974 44544433 34455455555555


Q ss_pred             HHH
Q 030202          166 EAL  168 (181)
Q Consensus       166 ~~~  168 (181)
                      +++
T Consensus       207 k~~  209 (214)
T d1em2a_         207 QRI  209 (214)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            554

>d1ln1a_ d.129.3.2 (A:) Phosphatidylcholine transfer protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: STAR domain
domain: Phosphatidylcholine transfer protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.52  E-value=0.0026  Score=46.91  Aligned_cols=141  Identities=13%  Similarity=0.090  Sum_probs=79.6

Q ss_pred             EEEEEEeCCCHHHHHHHHhccCCcccccccceeEEEecCCCCCCceEEEEeeeecCCCCCCCCCcCccceEEE-EEEEEe
Q 030202           19 RACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQ-KLLAIN   97 (181)
Q Consensus        19 ~v~~~I~~Ap~e~VW~~l~Df~~~~~w~P~v~~~~~~~G~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~E-rl~~~D   97 (181)
                      ++..+|.++|++.++.++.|....++|.|.+.++......+.  .-+....-...|..+        ...+-. +....+
T Consensus        48 k~~~~i~~~~~~~~~~~l~d~~~~~~Wd~~~~~~~~~~~~~~--~i~y~~~~~p~p~~~--------RD~v~~~~~~~~~  117 (203)
T d1ln1a_          48 KVFGVLEDCSPTLLADIYMDSDYRKQWDQYVKELYEQECNGE--TVVYWEVKYPFPMSN--------RDYVYLRQRRDLD  117 (203)
T ss_dssp             EEEEEETTSCHHHHHHHHHCHHHHHHHCTTEEEEEEEEETTE--EEEEEEECCCTTSCC--------EEEEEEEEEEEEC
T ss_pred             EEEEEEcCCCHHHHHHHHcCHhHhhhhcccceEEEEEccCCc--EEEEEEcccccccCC--------ceEEEEEEEEEcc
Confidence            345566249999999999999999999999877644332221  112222211122211        012222 222222


Q ss_pred             cCCCeEE---EEEeec-cc-------ceeeEEEEEEEEEcCC-ceEEEEEEEEeeCCCCCHHHHHH-HHHHHHHHHHHHH
Q 030202           98 AEEMTLT---YSIVDG-NV-------GFYGYVSTLTVAPKEN-GCYIEWKYEVEPVKGWRLEDLDC-FISSGLQVMARRM  164 (181)
Q Consensus        98 ~~~~~~~---y~v~~g-~~-------p~~~~~~t~~v~p~~~-gT~v~W~~~~~p~~~~~~~~~~~-~~~~gl~~l~~~l  164 (181)
                      ++...+.   ...... ..       ....+.+.+.++|.++ +|+|++....+|. |..|.-+.+ +...+.-.+.+.|
T Consensus       118 ~~~~~~~v~~~~~~~~~~~p~~~~~vR~~~~~~~~~l~~~~~~~t~v~~~~~~Dp~-G~iP~~lvn~~~~~~~~~~~~~l  196 (203)
T d1ln1a_         118 MEGRKIHVILARSTSMPQLGERSGVIRVKQYKQSLAIESDGKKGSKVFMYYFDNPG-GQIPSWLINWAAKNGVPNFLKDM  196 (203)
T ss_dssp             STTCCEEEEEEEECCBTTBCCCTTSEEECCEEEEEEEEECSSSSEEEEEEEEECCS-SCCCHHHHHHHHHTHHHHHHHHH
T ss_pred             CCCCeEEEEEeecccCCcCcccCCccccceeeEEEEEEecCCCcEEEEEEEEcCCC-CcCHHHHHHHHHHHHHHHHHHHH
Confidence            3222221   111221 11       2446778899999886 6999999999997 445545443 3455666666667


Q ss_pred             HHHHhh
Q 030202          165 KEALQA  170 (181)
Q Consensus       165 e~~~~~  170 (181)
                      ++++..
T Consensus       197 ~k~~~~  202 (203)
T d1ln1a_         197 ARACQN  202 (203)
T ss_dssp             HHHHHT
T ss_pred             HHHHhc
Confidence            776654

>d2ffsa1 d.129.3.7 (A:1-151) Hypothetical protein PA1206 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: PA1206-like
domain: Hypothetical protein PA1206
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.77  E-value=0.049  Score=38.95  Aligned_cols=124  Identities=10%  Similarity=-0.036  Sum_probs=75.9

Q ss_pred             CCCHHHHHHH-HhccCCcccccccceeEEEecCCCCCCceEEEEeeeecCCCCCCCCCcCccceEEEEEEEEecCCCeEE
Q 030202           26 GVKAEQIWAF-LEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLAINAEEMTLT  104 (181)
Q Consensus        26 ~Ap~e~VW~~-l~Df~~~~~w~P~v~~~~~~~G~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl~~~D~~~~~~~  104 (181)
                      .-..+++|+- +.-..+-..+.|++.+|++++..++  +-.|.+.+     .+  +       .++|+++-+.  ...+.
T Consensus        19 ~LTr~QlW~GL~lrar~p~~Fv~~l~~c~v~~~~~~--~~~Rel~f-----g~--~-------~v~e~Vtl~~--~~~v~   80 (151)
T d2ffsa1          19 VLDRLQLWEGLVCRAREPQYFVVGLERFEILVDDGD--RLHRRLYL-----PG--L-------VVEDEVVLKA--PDSAH   80 (151)
T ss_dssp             CCCHHHHHHHHHHHHHCGGGTCTTCCEEEEEEECSS--EEEEEEEE-----TT--E-------EEEEEEEEET--TTEEE
T ss_pred             ccCHHHHHHHHHHhhcCHhhcccccceEEEEEecCC--eEEEEEEE-----CC--c-------eeEEEEEEcC--CcEEE
Confidence            4567899984 4556666788999999998864332  56899887     12  2       7899988664  46888


Q ss_pred             EEEeecccceeeEEEEEEEEEcCCc-eEEEEEEEEe-eCCC----CCHHHHHHHHHHHHHHHHHHHHHHH
Q 030202          105 YSIVDGNVGFYGYVSTLTVAPKENG-CYIEWKYEVE-PVKG----WRLEDLDCFISSGLQVMARRMKEAL  168 (181)
Q Consensus       105 y~v~~g~~p~~~~~~t~~v~p~~~g-T~v~W~~~~~-p~~~----~~~~~~~~~~~~gl~~l~~~le~~~  168 (181)
                      |.+.... +..+..-++.+..-++| =.+++.++.. |...    ...+.++..|..+...-.+.+.++.
T Consensus        81 f~~~a~~-~~~g~~l~~~Ieep~~g~L~lrf~Ye~~~p~~~~~~~~~~e~~ksaY~~ad~dTvr~IRe~~  149 (151)
T d2ffsa1          81 YSIKPSA-EVAGGSLDMTIEEPEPGSLFVRFAYCTRYLQPLGDELPYDAFVKQAYIAMDVETIATIRDRF  149 (151)
T ss_dssp             EEECCCS-SSBEEEEEEEEEEEETTEEEEEEEEEEECSCC--CCCCCBHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEccccc-CCCCcEEEEEEccCCCCeEEEEEEEEcCCCCCCcchhhHHHHHHHHHHHHhHHHHHHHHHHh
Confidence            8766421 12223445555443445 5566666654 3211    1234556667766666666666554

>d2psoa1 d.129.3.2 (A:908-1104) Star-related lipid transfer protein 13 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: STAR domain
domain: Star-related lipid transfer protein 13
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.04  E-value=0.14  Score=37.03  Aligned_cols=115  Identities=11%  Similarity=0.104  Sum_probs=64.7

Q ss_pred             eEEEEEEeCCCHHHHHHH-HhccCCcccccccceeEEEec--CCCCCCceEEEEeeeecCCCCCCCCCcCccceEEEEEE
Q 030202           18 GRACEELTGVKAEQIWAF-LEDFFGLDKWFPTLTTCIPIQ--GISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLL   94 (181)
Q Consensus        18 ~~v~~~I~~Ap~e~VW~~-l~Df~~~~~w~P~v~~~~~~~--G~~~~vGsvR~~~~~~~~~~g~~G~~~~~~~~~~Erl~   94 (181)
                      -+++.+| +|++++|... +.+   -.+|.|.+..++.++  ++...+  ++...-...|..+        ...+.-+..
T Consensus        46 ~k~~~~i-~a~~~~vl~~~l~~---r~~Wd~~~~~~~~le~~~~~~~i--~y~~~~~p~pvs~--------RD~v~~~~~  111 (197)
T d2psoa1          46 WKASVEV-EAPPSVVLNRVLRE---RHLWDEDFVQWKVVETLDRQTEI--YQYVLNSMAPHPS--------RDFVVLRTW  111 (197)
T ss_dssp             EEEEEEE-SSCHHHHHHHHHHC---GGGTCTTBCCCEEEEEEETTEEE--EEEEECCSSSCCC--------EEEEEEEEE
T ss_pred             EEEEEEE-cCCHHHHHHHHHHh---HHHHhhhhheEEEEEEcCCCCEE--EEEEccCCCcccc--------eeEEEEEEE
Confidence            3667788 9999999864 443   468999998888765  322112  1222111122111        112333333


Q ss_pred             EEecCC--CeEEEEEeeccc-------ceeeEEEEEEEEEcCCc-eEEEEEEEEeeCCCCCHH
Q 030202           95 AINAEE--MTLTYSIVDGNV-------GFYGYVSTLTVAPKENG-CYIEWKYEVEPVKGWRLE  147 (181)
Q Consensus        95 ~~D~~~--~~~~y~v~~g~~-------p~~~~~~t~~v~p~~~g-T~v~W~~~~~p~~~~~~~  147 (181)
                      ..+.+.  ..+...-++.+.       ....+.+-+.++|.+++ |+|+|....+|. |..|.
T Consensus       112 ~~~~~~~~~~i~~~Sv~~~~~p~~~~VR~~~~~~~~~i~p~~~~~t~vt~~~~~Dp~-G~iP~  173 (197)
T d2psoa1         112 KTDLPKGMCTLVSLSVEHEEAQLLGGVRAVVMDSQYLIEPCGSGKSRLTHICRIDLK-GHSPE  173 (197)
T ss_dssp             ESCCGGGCEEEEEEECCCTTCCCCSSEECCEEEEEEEEEECSTTCEEEEEEEEECCS-SSCTT
T ss_pred             EEeCCCCEEEEEEEeccccCCCCCCcEEEEEEeccEEEEECCCCcEEEEEEEEECCC-CcCch
Confidence            333222  333433344331       23466777889999875 999999999996 33443