Citrus Sinensis ID: 030207

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-
Protein Sequence
METETQLEASQNDIPQQESKKLDAINDIPQQESKKLDARNDIPQQESKKLNFSNLTFRIWPPAQRTRDAVIARLIETLTTPSVLSKRYGAMPTDEADFTARFIENDAFSVADAAASAEDDGIEVLQVYSKEISKRMLEAVKSRSSAAASGISSGVDDTTSPAQPAGGPNEESVSSSVETEG
Secondary Structure (PSIPRED)
ccHHHHHHHHccccHHHHHHccccccccccccccccccccccccHHHccccccccEEEEcccccHHHHHHHHHHHHHcccccHHHHHccccccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccHHHccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccHHHHHHHHHHHHHHcccccHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHcHHHccccc
Coil and Loop (DISEMBL)
METETQLeasqndipqqeskkldaindipqqeskkldarndipqqeskklnfsnltfriwppaqrtRDAVIARLIETLttpsvlskrygamptdeadfTARFIENDAFSVADAAASAEDDGIEVLQVYSKEISKRMLEAVKSRSSAAasgissgvddttspaqpaggpneesvsssveteg
Flexible Loop (DISEMBL)
metetqleasqndipqqeskkldaINDIPQQeskkldarndipqqeskklnfsnltfriwppaqrTRDAVIARLIEtlttpsvlskrygaMPTDEADFTARFIENDAFSVADAAASAEDDGIEVLQVYSKEISKRMLEAVKSRSSAaasgissgvddttspaqpaggpneesvsssveteg
Low Complexity Region (SEG)
METETQLEASQNDIPQQESKKLDAINDIPQQESKKLDARNDIPQQESKKLNFSNLTFRIWPPAQRTRDAVIARLIETLTTPSVLSKRYGAMPTDEADFTARFIENdafsvadaaasaeddGIEVLQVYSKEISKRMLEAVKsrssaaasgissgVDDTTSPAQPAGGPNeesvsssveteG
Disordered region (IsUnstruct)
**************************************************NFSNLTFRIWPPAQRTRDAVIARLIETLTTPSVLSKRYGAMPTDEADFTARFIENDAFSVADAAASAEDDGIEVLQVYS****************************************************
Disordered Region (DISOPRED)
*********************************************************RIWPPAQRTRDAVIARLIETLTTPSVLSKRYGAMP*******ARFIENDAFS*************EVLQVYSKEISKRML********************************************
Disordered Region (DISEMBL)
****************QESKKLDAINDIPQQESKKLDARNDIPQQESKKLNFSNLTFRIWPPAQRTRDAVIARLIETLTTPSVLSKRYGAMPTDEADFTARFIENDAFSVADAAASAEDDGIEVLQVYSKEISKRM*********************************************
Disordered Region (DISPRO)
****************************************************SNLTFRIWPPAQRTRDAVIARLIETLTTPSVLSKRYGAMPTDEADFTARFIENDAFSVADAAASAEDDGIEVLQVYSKEISKRMLEAVKSR**************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
METETQLEASQNDIPQQESKKLDAINDIPQQESKKLDARNDIPQQESKKLNFSNLTFRIWPPAQRTRDAVIARLIETLTTPSVLSKRYGAMPTDEADFTARFIENDAFSVADAAASAEDDGIEVLQVYSKEISKRMLEAVKSRSSAAASGISSGVDDTTSPAQPAGGPNEESVSSSVETEG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	181	2.2.26 [Sep-21-2011]
Q9M7N6	152	MFP1 attachment factor 1	N/A	no	0.519	0.618	0.691	1e-32
Q9C500	180	WPP domain-containing pro	yes	no	0.685	0.688	0.492	6e-30
Q9FMH6	155	WPP domain-containing pro	no	no	0.635	0.741	0.516	8e-29
Q0WQ91	157	WPP domain-containing pro	no	no	0.602	0.694	0.378	2e-15
Q9LE82	535	RAN GTPase-activating pro	no	no	0.480	0.162	0.382	5e-13
Q9M651	545	RAN GTPase-activating pro	no	no	0.591	0.196	0.321	1e-10

>sp|Q9M7N6|MAF1_SOLLC MFP1 attachment factor 1 OS=Solanum lycopersicum GN=MAF1 PE=1 SV=1

 Score =  139 bits (349), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 65/94 (69%), Positives = 78/94 (82%)

Query: 56  TFRIWPPAQRTRDAVIARLIETLTTPSVLSKRYGAMPTDEADFTARFIENDAFSVADAAA 115
           +F IWPP QRTRDAVI RLIE+L+TPS+LSKRYG +P DEA  TAR IE +AF+ A + A
Sbjct: 25  SFSIWPPTQRTRDAVINRLIESLSTPSILSKRYGTLPQDEASETARLIEEEAFAAAGSTA 84

Query: 116 SAEDDGIEVLQVYSKEISKRMLEAVKSRSSAAAS 149
           S  DDGIE+LQVYSKEISKRM++ VKSRS+ AA+
Sbjct: 85  SDADDGIEILQVYSKEISKRMIDTVKSRSAPAAA 118

Solanum lycopersicum (taxid: 4081)

>sp|Q9C500|WPP2_ARATH WPP domain-containing protein 2 OS=Arabidopsis thaliana GN=WPP2 PE=1 SV=1

 Score =  130 bits (326), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 62/126 (49%), Positives = 91/126 (72%), Gaps = 2/126 (1%)

Query: 22  LDAINDIPQQESKKLDARNDIPQQESKKLNFSNLTFRIWPPAQRTRDAVIARLIETLTTP 81
           + A+ D   QE+   D   D+ ++   +     ++ RIWPP Q+TRDAV+ RLIETL+T 
Sbjct: 25  ISAMTDPTSQEAASKD--TDLTKEAESEKKPGGISLRIWPPTQKTRDAVLNRLIETLSTE 82

Query: 82  SVLSKRYGAMPTDEADFTARFIENDAFSVADAAASAEDDGIEVLQVYSKEISKRMLEAVK 141
           S+LSKRYG + +D+A   A+ IE +A+ VA  A S++DDGI++L++YSKEISKRMLE+VK
Sbjct: 83  SILSKRYGTLKSDDATTVAKLIEEEAYGVASNAVSSDDDGIKILELYSKEISKRMLESVK 142

Query: 142 SRSSAA 147
           +RS+A+
Sbjct: 143 ARSNAS 148

Regulates the mitotic activity in roots. Plays a role with HSP70-1 in facilitating WIT1 nuclear envelope targeting.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FMH6|WPP1_ARATH WPP domain-containing protein 1 OS=Arabidopsis thaliana GN=WPP1 PE=1 SV=1

 Score =  126 bits (317), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 63/122 (51%), Positives = 90/122 (73%), Gaps = 7/122 (5%)

Query: 42  IPQQESKK-LNFSNLTFRIWPPAQRTRDAVIARLIETLTTPSVLSKRYGAMPTDEADFTA 100
           +P  E++K  N   ++ RIWPP Q+TRDAVI RLIETL+T S+LSKR+G++ ++EA   A
Sbjct: 26  LPTTETEKNPNPVTISLRIWPPTQKTRDAVINRLIETLSTESILSKRFGSLESEEASSVA 85

Query: 101 RFIENDAFSVADAAASAEDDGIEVLQVYSKEISKRMLEAVKSRSSAAA------SGISSG 154
           + IE++A+++A A    +DDGIE+L+ YSKEISKRMLE+VK++S+ A+       GI S 
Sbjct: 86  KSIEDEAYAIASATVFGDDDGIEILKAYSKEISKRMLESVKAKSNVASPPPKDGDGIESA 145

Query: 155 VD 156
           VD
Sbjct: 146 VD 147

Regulates the mitotic activity in roots. Plays a role with HSP70-1 in facilitating WIT1 nuclear envelope targeting.

Arabidopsis thaliana (taxid: 3702)

>sp|Q0WQ91|WPP3_ARATH WPP domain-containing protein 3 OS=Arabidopsis thaliana GN=WPP3 PE=2 SV=1

 Score = 82.0 bits (201), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 42/111 (37%), Positives = 68/111 (61%), Gaps = 2/111 (1%)

Query: 39  RNDIPQQESKKLNFSNLTFRIWPPAQRTRDAVIARLIETLTTPSVLSKRYGAMPTDEADF 98
           R+D   + +K+     + F +WPP Q++RD V+  +I+TL+T S+LS +YG +  +EA  
Sbjct: 33  RSDATSEVTKEEKSGGILFSVWPPCQKSRDYVVNSMIKTLSTDSILSYKYGTIKPEEASA 92

Query: 99  TARFIENDAFSVADAAASAEDDGIEVLQVYSKEISKRMLEAVKSRSSAAAS 149
            A+ IE  A+ +A    S+  DGI+ L+VY  E S+RM+E+ + R  A  S
Sbjct: 93  VAKSIEEKAYDIASRFVSS--DGIKNLEVYGIETSERMIESAEVRFKANGS 141

Regulates the mitotic activity in roots.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LE82|RAGP1_ARATH RAN GTPase-activating protein 1 OS=Arabidopsis thaliana GN=RANGAP1 PE=1 SV=1

 Score = 73.9 bits (180), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 58/89 (65%), Gaps = 2/89 (2%)

Query: 55  LTFRIWPPAQRTRDAVIARLIETLTTPSVLSKRYGAMPTDEADFTARFIENDAFSVADAA 114
           L+ ++WPP++ TR  ++ R+ + +TTPS+ S++YG +  +EA+  A+ IE+ AF+ A+  
Sbjct: 13  LSVKMWPPSKSTRLMLVERMTKNITTPSIFSRKYGLLSVEEAEQDAKRIEDLAFATANKH 72

Query: 115 ASAE--DDGIEVLQVYSKEISKRMLEAVK 141
              E   DG   + VY+KE SK ML+ +K
Sbjct: 73  FQNEPDGDGTSAVHVYAKESSKLMLDVIK 101

GTPase activator for the nuclear Ras-related regulatory protein Ran, converting it to the putatively inactive GDP-bound state.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M651|RAGP2_ARATH RAN GTPase-activating protein 2 OS=Arabidopsis thaliana GN=RANGAP2 PE=1 SV=2

 Score = 66.2 bits (160), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 62/109 (56%), Gaps = 2/109 (1%)

Query: 55  LTFRIWPPAQRTRDAVIARLIETLTTPSVLSKRYGAMPTDEADFTARFIENDAFSVADAA 114
            + ++WPP+  TR A+I R+    ++ ++ +++YG++  D+A   A+ IE+ AFS A+  
Sbjct: 12  FSIKLWPPSLPTRKALIERITNNFSSKTIFTEKYGSLTKDQATENAKRIEDIAFSTANQQ 71

Query: 115 ASAE--DDGIEVLQVYSKEISKRMLEAVKSRSSAAASGISSGVDDTTSP 161
              E   DG   +Q+Y+KE SK +LE +K    A  +      +D+ SP
Sbjct: 72  FEREPDGDGGSAVQLYAKECSKLILEVLKKGPVAKVAARELISEDSVSP 120

GTPase activator for the nuclear Ras-related regulatory protein Ran, converting it to the putatively inactive GDP-bound state.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	181
255538152	173	conserved hypothetical protein [Ricinus	0.624	0.653	0.631	5e-34
359491999	149	PREDICTED: MFP1 attachment factor 1-like	0.596	0.724	0.629	6e-34
224137672	180	predicted protein [Populus trichocarpa]	0.723	0.727	0.568	4e-32
224063467	160	predicted protein [Populus trichocarpa]	0.779	0.881	0.542	9e-32
350535412	152	MFP1 attachment factor 1 [Solanum lycope	0.519	0.618	0.691	6e-31
329025164	152	MAF1 [Solanum chacoense]	0.519	0.618	0.680	1e-30
449450255	154	PREDICTED: MFP1 attachment factor 1-like	0.585	0.688	0.603	7e-30
449447043	159	PREDICTED: MFP1 attachment factor 1-like	0.591	0.672	0.618	3e-29
21553809	180	unknown [Arabidopsis thaliana]	0.685	0.688	0.492	2e-28
18401618	180	WPP domain-containing protein 2 [Arabido	0.685	0.688	0.492	3e-28

>gi|255538152|ref|XP_002510141.1| conserved hypothetical protein [Ricinus communis] gi|223550842|gb|EEF52328.1| conserved hypothetical protein [Ricinus communis]

 Score =  149 bits (376), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 72/114 (63%), Positives = 92/114 (80%), Gaps = 1/114 (0%)

Query: 48  KKLNFSNLTFRIWPPAQRTRDAVIARLIETLTTPSVLSKRYGAMPTDEADFTARFIENDA 107
           KKL+ S ++  IWPP QRTRDAVI RLIETL++PSVLSKRYG +  DEA+  AR IE++A
Sbjct: 40  KKLSTSGISLSIWPPTQRTRDAVITRLIETLSSPSVLSKRYGTISHDEAESAARRIEDEA 99

Query: 108 FSVADAAASAEDDGIEVLQVYSKEISKRMLEAVKSRSSAAASGISSGVDDTTSP 161
           F VA+ A SAEDDG+E+LQ+YSKEIS+RML+ VK+RS    S +S+GV +TT+P
Sbjct: 100 FGVANTATSAEDDGLEILQLYSKEISRRMLDTVKARSR-LDSAVSNGVSETTTP 152

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359491999|ref|XP_002285058.2| PREDICTED: MFP1 attachment factor 1-like [Vitis vinifera]

 Score =  149 bits (375), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 68/108 (62%), Positives = 87/108 (80%)

Query: 43  PQQESKKLNFSNLTFRIWPPAQRTRDAVIARLIETLTTPSVLSKRYGAMPTDEADFTARF 102
           P QE+KK +  N+ F IWPP QRTRDAVI RLIETLTTPSVL+KRYG MP DEA  TAR 
Sbjct: 13  PPQEAKKPDKINVAFSIWPPTQRTRDAVINRLIETLTTPSVLAKRYGTMPADEASATARL 72

Query: 103 IENDAFSVADAAASAEDDGIEVLQVYSKEISKRMLEAVKSRSSAAASG 150
           +E +A++ A  + +A+D+GIE+LQVYS+EISKRMLEAVK+R+ + ++ 
Sbjct: 73  VEEEAYAAAGGSPNADDEGIEILQVYSREISKRMLEAVKTRAGSGSTA 120

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224137672|ref|XP_002327184.1| predicted protein [Populus trichocarpa] gi|222835499|gb|EEE73934.1| predicted protein [Populus trichocarpa]

 Score =  142 bits (359), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 75/132 (56%), Positives = 94/132 (71%), Gaps = 1/132 (0%)

Query: 49  KLNFSNLTFRIWPPAQRTRDAVIARLIETLTTPSVLSKRYGAMPTDEADFTARFIENDAF 108
           K   S  +F IWPP QRTRDA+I+RLIETL+T SVLSKRYG +P +EA   +R IE +AF
Sbjct: 49  KQTSSGFSFSIWPPTQRTRDAIISRLIETLSTTSVLSKRYGTIPKEEASEASRRIEEEAF 108

Query: 109 SVADAAASAEDDGIEVLQVYSKEISKRMLEAVKSRSSAAASGISSGVDDTTSPAQPAGGP 168
           S A   AS+E DG+EVLQ+YSKEISKRMLE VK+R+ + A+G +S  +  ++   P    
Sbjct: 109 SGASTVASSEKDGLEVLQLYSKEISKRMLETVKARAGSGANGDNSATETASADVTPKAVA 168

Query: 169 NEESVSSSVETE 180
           NEE VSSS E E
Sbjct: 169 NEE-VSSSAEAE 179

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224063467|ref|XP_002301159.1| predicted protein [Populus trichocarpa] gi|222842885|gb|EEE80432.1| predicted protein [Populus trichocarpa]

 Score =  141 bits (356), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 77/142 (54%), Positives = 103/142 (72%), Gaps = 1/142 (0%)

Query: 40  NDIPQQESKKLNFSNLTFRIWPPAQRTRDAVIARLIETLTTPSVLSKRYGAMPTDEADFT 99
           +D    ++KK   + ++F IWP  QRTRD+VI RLIETL+T SVLSKRYG +P DEA   
Sbjct: 19  DDSSATDTKKQARNAISFSIWPLTQRTRDSVITRLIETLSTTSVLSKRYGTVPHDEASEV 78

Query: 100 ARFIENDAFSVADAAASAEDDGIEVLQVYSKEISKRMLEAVKSRSSAAASGISSGVDDTT 159
           +R IE +AFSVA +++S+EDDG+EV+Q+YSKEISKRMLE VK+RS ++A+G +S     +
Sbjct: 79  SRRIEEEAFSVATSSSSSEDDGLEVVQLYSKEISKRMLETVKARSESSANGDNSAAKTVS 138

Query: 160 SPAQPAGGPNEESVSSSVETEG 181
           +   P    +EE V SSVETE 
Sbjct: 139 ADVTPTSAASEE-VLSSVETEA 159

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350535412|ref|NP_001234193.1| MFP1 attachment factor 1 [Solanum lycopersicum] gi|75185987|sp|Q9M7N6.1|MAF1_SOLLC RecName: Full=MFP1 attachment factor 1 gi|7546725|gb|AAF63657.1|AF118113_1 MFP1 attachment factor 1 [Solanum lycopersicum]

 Score =  139 bits (349), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 65/94 (69%), Positives = 78/94 (82%)

Query: 56  TFRIWPPAQRTRDAVIARLIETLTTPSVLSKRYGAMPTDEADFTARFIENDAFSVADAAA 115
           +F IWPP QRTRDAVI RLIE+L+TPS+LSKRYG +P DEA  TAR IE +AF+ A + A
Sbjct: 25  SFSIWPPTQRTRDAVINRLIESLSTPSILSKRYGTLPQDEASETARLIEEEAFAAAGSTA 84

Query: 116 SAEDDGIEVLQVYSKEISKRMLEAVKSRSSAAAS 149
           S  DDGIE+LQVYSKEISKRM++ VKSRS+ AA+
Sbjct: 85  SDADDGIEILQVYSKEISKRMIDTVKSRSAPAAA 118

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|329025164|gb|AEB71565.1| MAF1 [Solanum chacoense]

 Score =  138 bits (347), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 64/94 (68%), Positives = 78/94 (82%)

Query: 56  TFRIWPPAQRTRDAVIARLIETLTTPSVLSKRYGAMPTDEADFTARFIENDAFSVADAAA 115
           +F IWPP QRTRDAVI RLIE+L+TPS+LSKRYG +P DEA  TAR IE +AF+ A + A
Sbjct: 25  SFSIWPPTQRTRDAVINRLIESLSTPSILSKRYGTLPQDEASETARLIEEEAFAAAGSTA 84

Query: 116 SAEDDGIEVLQVYSKEISKRMLEAVKSRSSAAAS 149
           +  DDGIE+LQVYSKEISKRM++ VKSRS+ AA+
Sbjct: 85  TDADDGIEILQVYSKEISKRMIDTVKSRSAPAAA 118

Source: Solanum chacoense

Species: Solanum chacoense

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449450255|ref|XP_004142879.1| PREDICTED: MFP1 attachment factor 1-like [Cucumis sativus] gi|449482700|ref|XP_004156375.1| PREDICTED: MFP1 attachment factor 1-like [Cucumis sativus]

 Score =  135 bits (340), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 64/106 (60%), Positives = 80/106 (75%)

Query: 57  FRIWPPAQRTRDAVIARLIETLTTPSVLSKRYGAMPTDEADFTARFIENDAFSVADAAAS 116
           F IWPP QRTRDAVI+RLIETL+TPS+LSKR+G +P DEA   A+ IE +A++ A+ +  
Sbjct: 35  FSIWPPTQRTRDAVISRLIETLSTPSILSKRFGTIPPDEAATVAQLIEEEAYAYANGSPP 94

Query: 117 AEDDGIEVLQVYSKEISKRMLEAVKSRSSAAASGISSGVDDTTSPA 162
           + DDGIE+LQVYSKEISKRMLEAVK R S AA   +   ++  SP 
Sbjct: 95  SVDDGIEILQVYSKEISKRMLEAVKGRPSPAAPAENGETEEVRSPV 140

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449447043|ref|XP_004141279.1| PREDICTED: MFP1 attachment factor 1-like [Cucumis sativus] gi|449508177|ref|XP_004163241.1| PREDICTED: MFP1 attachment factor 1-like [Cucumis sativus]

 Score =  133 bits (335), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 68/110 (61%), Positives = 83/110 (75%), Gaps = 3/110 (2%)

Query: 54  NLTFRIWPPAQRTRDAVIARLIETLTTPSVLSKRYGAMPTDEADFTARFIENDAFSVADA 113
           N +F IWPP+QRTRDAVI RLIETL+ PSVLSKRYG +P +EA   AR IE +A+S A  
Sbjct: 40  NTSFSIWPPSQRTRDAVIKRLIETLSNPSVLSKRYGTVPQEEAAEAARLIEEEAYSFAAG 99

Query: 114 AASAEDDGIEVLQVYSKEISKRMLEAVKSRS---SAAASGISSGVDDTTS 160
            ASA+DDGIE+LQ+YS+EISKR LE VK+R+   S A +G S  V  TT+
Sbjct: 100 KASADDDGIEILQLYSREISKRTLETVKARAASDSTAENGSSPPVVSTTT 149

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21553809|gb|AAM62902.1| unknown [Arabidopsis thaliana]

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 62/126 (49%), Positives = 91/126 (72%), Gaps = 2/126 (1%)

Query: 22  LDAINDIPQQESKKLDARNDIPQQESKKLNFSNLTFRIWPPAQRTRDAVIARLIETLTTP 81
           + A+ D   QE+   D   D+ ++   +     ++ RIWPP Q+TRDAV+ RLIETL+T 
Sbjct: 25  ISAMTDPTSQEAASKD--TDLTKEAESEKKPGGISLRIWPPTQKTRDAVLNRLIETLSTE 82

Query: 82  SVLSKRYGAMPTDEADFTARFIENDAFSVADAAASAEDDGIEVLQVYSKEISKRMLEAVK 141
           S+LSKRYG + +D+A   A+ IE +A+ VA  A S++DDGI++L++YSKEISKRMLE+VK
Sbjct: 83  SILSKRYGTLKSDDATTVAKLIEEEAYGVASNAVSSDDDGIKILELYSKEISKRMLESVK 142

Query: 142 SRSSAA 147
           +RS+A+
Sbjct: 143 ARSNAS 148

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18401618|ref|NP_564498.1| WPP domain-containing protein 2 [Arabidopsis thaliana] gi|75168866|sp|Q9C500.1|WPP2_ARATH RecName: Full=WPP domain-containing protein 2; AltName: Full=MFP1 attachment factor 2 gi|12320998|gb|AAG50616.1|AC083835_1 unknown protein [Arabidopsis thaliana] gi|12325398|gb|AAG52640.1|AC079677_4 unknown protein; 31600-32142 [Arabidopsis thaliana] gi|18176025|gb|AAL59970.1| unknown protein [Arabidopsis thaliana] gi|20465927|gb|AAM20116.1| unknown protein [Arabidopsis thaliana] gi|332194015|gb|AEE32136.1| WPP domain-containing protein 2 [Arabidopsis thaliana]

 Score =  130 bits (326), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 62/126 (49%), Positives = 91/126 (72%), Gaps = 2/126 (1%)

Query: 22  LDAINDIPQQESKKLDARNDIPQQESKKLNFSNLTFRIWPPAQRTRDAVIARLIETLTTP 81
           + A+ D   QE+   D   D+ ++   +     ++ RIWPP Q+TRDAV+ RLIETL+T 
Sbjct: 25  ISAMTDPTSQEAASKD--TDLTKEAESEKKPGGISLRIWPPTQKTRDAVLNRLIETLSTE 82

Query: 82  SVLSKRYGAMPTDEADFTARFIENDAFSVADAAASAEDDGIEVLQVYSKEISKRMLEAVK 141
           S+LSKRYG + +D+A   A+ IE +A+ VA  A S++DDGI++L++YSKEISKRMLE+VK
Sbjct: 83  SILSKRYGTLKSDDATTVAKLIEEEAYGVASNAVSSDDDGIKILELYSKEISKRMLESVK 142

Query: 142 SRSSAA 147
           +RS+A+
Sbjct: 143 ARSNAS 148

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	181
UNIPROTKB|Q9M7N6	152	MAF1 "MFP1 attachment factor 1	0.475	0.565	0.616	1.8e-23
TAIR|locus:2036736	180	WPP2 "AT1G47200" [Arabidopsis	0.690	0.694	0.429	1e-22
TAIR|locus:2167831	155	WPP1 "WPP domain protein 1" [A	0.552	0.645	0.504	6.3e-21
TAIR|locus:2143749	157	WPP3 "AT5G27940" [Arabidopsis	0.646	0.745	0.322	7.1e-13
TAIR|locus:2099207	535	RANGAP1 "AT3G63130" [Arabidops	0.480	0.162	0.325	2e-09
TAIR|locus:2150285	545	RANGAP2 "AT5G19320" [Arabidops	0.596	0.198	0.254	1.8e-07

UNIPROTKB|Q9M7N6 MAF1 "MFP1 attachment factor 1" [Solanum lycopersicum (taxid:4081)]

 Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
 Identities = 53/86 (61%), Positives = 61/86 (70%)

Query:    56 TFRIWPPAQRTRDAVIARLIETLTTPSVLSKRYGAMPTDEADFTARFIENXXXXXXXXXX 115
             +F IWPP QRTRDAVI RLIE+L+TPS+LSKRYG +P DEA  TAR IE           
Sbjct:    25 SFSIWPPTQRTRDAVINRLIESLSTPSILSKRYGTLPQDEASETARLIEEEAFAAAGSTA 84

Query:   116 XXXXXGIEVLQVYSKEISKRMLEAVK 141
                  GIE+LQVYSKEISKRM++ VK
Sbjct:    85 SDADDGIEILQVYSKEISKRMIDTVK 110

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2036736 WPP2 "AT1G47200" [Arabidopsis thaliana (taxid:3702)]

 Score = 263 (97.6 bits), Expect = 1.0e-22, P = 1.0e-22
 Identities = 55/128 (42%), Positives = 78/128 (60%)

Query:    15 PQQESKK-LDAINDIPQQESKKLDARNDIPQQESKKLNFSNLTFRIWPPAQRTRDAVIAR 73
             P+ ES   + A+ D   QE+   D   D+ ++   +     ++ RIWPP Q+TRDAV+ R
Sbjct:    17 PESESSTTISAMTDPTSQEAASKDT--DLTKEAESEKKPGGISLRIWPPTQKTRDAVLNR 74

Query:    74 LIETLTTPSVLSKRYGAMPTDEADFTARFIENXXXXXXXXXXXXXXXGIEVLQVYSKEIS 133
             LIETL+T S+LSKRYG + +D+A   A+ IE                GI++L++YSKEIS
Sbjct:    75 LIETLSTESILSKRYGTLKSDDATTVAKLIEEEAYGVASNAVSSDDDGIKILELYSKEIS 134

Query:   134 KRMLEAVK 141
             KRMLE+VK
Sbjct:   135 KRMLESVK 142

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0005640 "nuclear outer membrane" evidence=IDA

GO:0007067 "mitosis" evidence=RCA;IMP

GO:0048527 "lateral root development" evidence=RCA;IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006913 "nucleocytoplasmic transport" evidence=RCA

TAIR|locus:2167831 WPP1 "WPP domain protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 246 (91.7 bits), Expect = 6.3e-21, P = 6.3e-21
 Identities = 51/101 (50%), Positives = 69/101 (68%)

Query:    42 IPQQESKKL-NFSNLTFRIWPPAQRTRDAVIARLIETLTTPSVLSKRYGAMPTDEADFTA 100
             +P  E++K  N   ++ RIWPP Q+TRDAVI RLIETL+T S+LSKR+G++ ++EA   A
Sbjct:    26 LPTTETEKNPNPVTISLRIWPPTQKTRDAVINRLIETLSTESILSKRFGSLESEEASSVA 85

Query:   101 RFIENXXXXXXXXXXXXXXXGIEVLQVYSKEISKRMLEAVK 141
             + IE+               GIE+L+ YSKEISKRMLE+VK
Sbjct:    86 KSIEDEAYAIASATVFGDDDGIEILKAYSKEISKRMLESVK 126

GO:0005634 "nucleus" evidence=ISM

GO:0005640 "nuclear outer membrane" evidence=IDA

GO:0048527 "lateral root development" evidence=RCA;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005829 "cytosol" evidence=RCA

GO:0006913 "nucleocytoplasmic transport" evidence=RCA

TAIR|locus:2143749 WPP3 "AT5G27940" [Arabidopsis thaliana (taxid:3702)]

 Score = 170 (64.9 bits), Expect = 7.1e-13, P = 7.1e-13
 Identities = 41/127 (32%), Positives = 69/127 (54%)

Query:    15 PQQESKKLDAINDIPQQESKKLDARNDIPQQESKKLNFSNLTFRIWPPAQRTRDAVIARL 74
             PQ ES+  D  + + +  S   DA +++ ++E        + F +WPP Q++RD V+  +
Sbjct:    17 PQLESRS-DETSCLQKHRS---DATSEVTKEEKS----GGILFSVWPPCQKSRDYVVNSM 68

Query:    75 IETLTTPSVLSKRYGAMPTDEADFTARFIENXXXXXXXXXXXXXXXGIEVLQVYSKEISK 134
             I+TL+T S+LS +YG +  +EA   A+ IE                GI+ L+VY  E S+
Sbjct:    69 IKTLSTDSILSYKYGTIKPEEASAVAKSIEEKAYDIASRFVSSD--GIKNLEVYGIETSE 126

Query:   135 RMLEAVK 141
             RM+E+ +
Sbjct:   127 RMIESAE 133

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2099207 RANGAP1 "AT3G63130" [Arabidopsis thaliana (taxid:3702)]

 Score = 147 (56.8 bits), Expect = 2.0e-09, P = 2.0e-09
 Identities = 29/89 (32%), Positives = 51/89 (57%)

Query:    55 LTFRIWPPAQRTRDAVIARLIETLTTPSVLSKRYGAMPTDEADFTARFIENXXXXXXXXX 114
             L+ ++WPP++ TR  ++ R+ + +TTPS+ S++YG +  +EA+  A+ IE+         
Sbjct:    13 LSVKMWPPSKSTRLMLVERMTKNITTPSIFSRKYGLLSVEEAEQDAKRIEDLAFATANKH 72

Query:   115 XXXX--XXGIEVLQVYSKEISKRMLEAVK 141
                     G   + VY+KE SK ML+ +K
Sbjct:    73 FQNEPDGDGTSAVHVYAKESSKLMLDVIK 101

GO:0005098 "Ran GTPase activator activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0000072 "M phase specific microtubule process" evidence=TAS

GO:0005635 "nuclear envelope" evidence=IDA

GO:0006606 "protein import into nucleus" evidence=RCA;TAS

GO:0009507 "chloroplast" evidence=IDA

GO:0009504 "cell plate" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0000910 "cytokinesis" evidence=IMP

GO:0032153 "cell division site" evidence=IDA

GO:0000280 "nuclear division" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0006346 "methylation-dependent chromatin silencing" evidence=RCA

GO:0006406 "mRNA export from nucleus" evidence=RCA

GO:0006913 "nucleocytoplasmic transport" evidence=RCA

GO:0007000 "nucleolus organization" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0031048 "chromatin silencing by small RNA" evidence=RCA

GO:0048527 "lateral root development" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

TAIR|locus:2150285 RANGAP2 "AT5G19320" [Arabidopsis thaliana (taxid:3702)]

 Score = 129 (50.5 bits), Expect = 1.8e-07, P = 1.8e-07
 Identities = 28/110 (25%), Positives = 54/110 (49%)

Query:    56 TFRIWPPAQRTRDAVIARLIETLTTPSVLSKRYGAMPTDEADFTARFIENXXXXXXXXXX 115
             + ++WPP+  TR A+I R+    ++ ++ +++YG++  D+A   A+ IE+          
Sbjct:    13 SIKLWPPSLPTRKALIERITNNFSSKTIFTEKYGSLTKDQATENAKRIEDIAFSTANQQF 72

Query:   116 XXXXXGI--EVLQVYSKEISKRMLEAVKXXXXXXXXXXXXXVDDTTSPAQ 163
                  G     +Q+Y+KE SK +LE +K              +D+ SP +
Sbjct:    73 EREPDGDGGSAVQLYAKECSKLILEVLKKGPVAKVAARELISEDSVSPRE 122


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.310   0.127   0.346    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      181       142   0.00091  102 3  11 23  0.39    32
                                                     30  0.47    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  6
  No. of states in DFA:  515 (55 KB)
  Total size of DFA:  104 KB (2072 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  13.05u 0.18s 13.23t   Elapsed:  00:00:00
  Total cpu time:  13.05u 0.18s 13.23t   Elapsed:  00:00:00
  Start:  Fri May 10 13:30:28 2013   End:  Fri May 10 13:30:28 2013

GO:0005098 "Ran GTPase activator activity" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0005635 "nuclear envelope" evidence=IDA

GO:0006913 "nucleocytoplasmic transport" evidence=RCA;TAS

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0009651 "response to salt stress" evidence=IEP

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0010388 "cullin deneddylation" evidence=RCA

GO:0048527 "lateral root development" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00014902001 SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (1067 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	181
pfam13943	100	pfam13943, WPP, WPP domain	1e-39

>gnl|CDD|206114 pfam13943, WPP, WPP domain

 Score =  129 bits (327), Expect = 1e-39
 Identities = 57/99 (57%), Positives = 73/99 (73%), Gaps = 2/99 (2%)

Query: 57  FRIWPPAQRTRDAVIARLIETLTTPSVLSKRYGAMPTDEADFTARFIENDAFSVADAAAS 116
           F++WPP+QRTRDAV+ RL ETL+TPS+LSKRYG +  +EA+  A+ IE +AF+ A+A AS
Sbjct: 2   FKLWPPSQRTRDAVVERLTETLSTPSILSKRYGLLSKEEAEEAAKAIEEEAFAAANAHAS 61

Query: 117 AE--DDGIEVLQVYSKEISKRMLEAVKSRSSAAASGISS 153
            E   DGI  LQ+YSKEISKRMLE +K R  AA +    
Sbjct: 62  KEPDGDGISALQLYSKEISKRMLEVLKRRPRAAEAPEEP 100

Length = 100

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	181
PF13943	99	WPP: WPP domain	100.0

>PF13943 WPP: WPP domain

Probab=100.00  E-value=2.1e-49  Score=301.07  Aligned_cols=96  Identities=52%  Similarity=0.888  Sum_probs=93.2

Q ss_pred             cEEecCCCchhHHHHHHHHHHhcccchhhhhhcCCCChhhHHHHHhhhHHHHHHhhhhh--cCCCCCchHHHHHHHHHHH
Q 030207           56 TFRIWPPAQRTRDAVIARLIETLTTPSVLSKRYGAMPTDEADFTARFIENDAFSVADAA--ASAEDDGIEVLQVYSKEIS  133 (181)
Q Consensus        56 S~kiWPPsQrTRdaVV~RmienLSt~SilSkrYG~l~~eEAee~Ak~IEe~AFa~An~~--~~pdgDGieavQlYAKE~S  133 (181)
                      |||||||+|+||||||+||++||+++||||||||+|+++||+++||+|||+||++|++|  .+||+|||++||+|+||||
T Consensus         1 s~~lWPpsq~tR~~vv~Rm~~nLss~s~~s~ryg~l~~eeA~~~Ak~IEe~AF~~A~~~~~~~~d~dg~e~vq~YaKE~S   80 (99)
T PF13943_consen    1 SFKLWPPSQRTRDAVVERMTENLSSPSILSKRYGTLPKEEAEEAAKRIEEEAFAAANQHYETEPDGDGIEAVQLYAKEIS   80 (99)
T ss_pred             CCCcCCCCchHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhhccCCCCCchHHHHHHHHHHHH
Confidence            79999999999999999999999999999999999999999999999999999999997  8899999999999999999


Q ss_pred             HHHHHHHhcccccccCCC
Q 030207          134 KRMLEAVKSRSSAAASGI  151 (181)
Q Consensus       134 KrMLE~lK~rs~~a~~~~  151 (181)
                      |||||+||+|+.++.++.
T Consensus        81 klmLE~vK~~~~~~~~~~   98 (99)
T PF13943_consen   81 KLMLEVVKSGPKAASAAE   98 (99)
T ss_pred             HHHHHHHHhcCCcccccc
Confidence            999999999999887764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	181
2dme_A	120	PHD finger protein 3; PHF3, TFS2M, glioblastoma mu	80.65

>2dme_A PHD finger protein 3; PHF3, TFS2M, glioblastoma multiforme, brain tumor, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=80.65  E-value=1.6  Score=32.73  Aligned_cols=49  Identities=24%  Similarity=0.246  Sum_probs=36.1

Q ss_pred             CCCchhHHHHHHHHHHhcccchhhhhhcCCCChhhHHHHHhhhHHHHHHhh
Q 030207           61 PPAQRTRDAVIARLIETLTTPSVLSKRYGAMPTDEADFTARFIENDAFSVA  111 (181)
Q Consensus        61 PPsQrTRdaVV~RmienLSt~SilSkrYG~l~~eEAee~Ak~IEe~AFa~A  111 (181)
                      |.+..+|+.+++-|.+-|....-  .-...++..++...|..||+..|..-
T Consensus         7 ~~~d~~Rd~~r~~L~eaL~~~~~--~~~~~~~~~~~~~lA~~IE~~lf~~~   55 (120)
T 2dme_A            7 GSADQIRQSVRHSLKDILMKRLT--DSNLKVPEEKAAKVATKIEKELFSFF   55 (120)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHT--TTTCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCchHHHHHHHHHHHHHHHhcc--ccccccchhHHHHHHHHHHHHHHHHc
Confidence            45578999999999888863221  11125667789999999999999755

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00