Citrus Sinensis ID: 030232

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-
Protein Sequence
MMDLSWLSTILFGAGCLAFGYCIGKGCPACFFVSVRRAKNAAVANENKKNKAKEPLEIEKLADILDDFKMVLVVRNDLKMGKGKIAAQCSHATLGLYKKVLYRAPKALNRWEMCAQPKVVLKIESEEDMLVLQERAKSLKLPTHITIDAGRTQIAPNSRTVMAILGPVEVVDDVTGGLKLL
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHccccccccHHHHHHHHccccccEEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHccccEEEEEcccHHHHHHHHHHHHHccccEEEEEccccccccccccEEEEEccccHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccEEEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHccccEEEEEEccHHHHHHHHHHHHHccccEEEEEEccccccccccEEEEEEcccHHHHHHHccccccc
Coil and Loop (DISEMBL)
MMDLSWLSTILFGAGCLAfgycigkgcpacfFVSVRRAKNAAVANenkknkakepleIEKLADILDDFKMVLVVRNdlkmgkgkiaaqcSHATLGLYKKVLYRAPKalnrwemcaqpkvvlkiESEEDMLVLQERAKslklpthitidagrtqiapnsrtvMAILGPVEVVDDVTGGLKLL
Flexible Loop (DISEMBL)
MMDLSWLSTILFGAGCLAFGYCIGKGCPACFFVSVRRAKNAAvanenkknkakepleiEKLADILDDFKMVLVVRNDLKmgkgkiaaqcshatlgLYKKVLYRAPKALNRWEMCAQPKVVLKIESEEDMLVLQERAkslklpthitidagrtqiapnsRTVMAILGPVEVVDDVTGGLKLL
Low Complexity Region (SEG)
MMDLSWLSTILFGAGCLAFGYCIGKGCPACFFVSvrraknaavanenkknkakePLEIEKLADILDDFKMVLVVRNDLKMGKGKIAAQCSHATLGLYKKVLYRAPKALNRWEMCAQPKVVLKIESEEDMLVLQERAKSLKLPTHITIDAGRTQIAPNSRTVMAILGPVEVVDDVTGGLKLL
Disordered region (IsUnstruct)
***LSWLSTILFGAGCLAFGYCIGKGCPACFFVSVRRAKNA***************EIEKLADILDDFKMVLVVRNDLKMGKGKIAAQCSHATLGLYKKVLYRAPKALNRWEMCAQPKVVLKIESEEDMLVLQERAKSLKLPTHITIDAGRTQIAPNSRTVMAILGPVEVVDDVTG*****
Disordered Region (DISOPRED)
****SWLSTILFGAGCLAFGYCIGKGCPACFF**********************************DFKMVLVVRNDLKMGKGKIAAQCSHATLGLYKKVLYRAPKALNRWEMCAQPKVVLKIESEEDMLVLQERAKSLKLPTHITIDAGRTQIAPNSRTVMAILGPVEVVDDVTGGLKLL
Disordered Region (DISEMBL)
MMDLSWLSTILFGAGCLAFGYCIGKGCPACFFVSVRRAKNAAVANENKKNKAKEPLEIEKLADILDDFKMVLVVRNDLKMGKGKIAAQCSHATLGLYKKVLYRAPKALNRWEMCAQPKVVLKIESEEDMLVLQERAKSLKLPTHITIDAGRTQIAPNSRTVMAILGPVEVVDDVTGGLKLL
Disordered Region (DISPRO)
*MDLSWLSTILFGAGCLAFGYCIGKGCPACFFVSVRR*************************DILDDFKMVLVVRNDLKMGKGKIAAQCSHATLGLYKKVLYRAPKALNRWEMCAQPKVVLKIESEEDMLVLQERAKSLKLPTHITIDAGRTQIAPNSRTVMAILGPVEVVDDVTGGLKLL
Transmembrane Helix (TMHMM)
oooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MMDLSWLSTILFGAGCLAFGYCIGKGCPACFFVSVRRAKNAAVANENKKNKAKEPLEIEKLADILDDFKMVLVVRNDLKMGKGKIAAQCSHATLGLYKKVLYRAPKALNRWEMCAQPKVVLKIESEEDMLVLQERAKSLKLPTHITIDAGRTQIAPNSRTVMAILGPVEVVDDVTGGLKLL
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	181	2.2.26 [Sep-21-2011]
Q9Y3E5	179	Peptidyl-tRNA hydrolase 2	yes	no	0.872	0.882	0.469	4e-33
Q8R2Y8	181	Peptidyl-tRNA hydrolase 2	yes	no	0.856	0.856	0.465	8e-33
Q3ZBL5	179	Peptidyl-tRNA hydrolase 2	yes	no	0.685	0.692	0.546	7e-31
O97067	186	Probable peptidyl-tRNA hy	yes	no	0.635	0.618	0.516	2e-28
A4YD82	117	Peptidyl-tRNA hydrolase O	yes	no	0.629	0.974	0.461	3e-20
Q54ZD0	210	Probable peptidyl-tRNA hy	yes	no	0.696	0.6	0.445	1e-19
O76387	316	Probable peptidyl-tRNA hy	yes	no	0.629	0.360	0.482	2e-19
Q976I0	121	Peptidyl-tRNA hydrolase O	yes	no	0.624	0.933	0.474	3e-19
Q980V1	120	Peptidyl-tRNA hydrolase O	yes	no	0.629	0.95	0.420	4e-19
Q60363	115	Peptidyl-tRNA hydrolase O	yes	no	0.624	0.982	0.439	8e-19

>sp|Q9Y3E5|PTH2_HUMAN Peptidyl-tRNA hydrolase 2, mitochondrial OS=Homo sapiens GN=PTRH2 PE=1 SV=1

 Score =  140 bits (354), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 78/166 (46%), Positives = 99/166 (59%), Gaps = 8/166 (4%)

Query: 19  FGYCIGKGCPACFFVSVRRAKNAAVANENKKNKAKEPLEIEKLADILDD---FKMVLVVR 75
            G  +G  C  C   S+R           K   +K   + E  A IL D   +KM+LVVR
Sbjct: 17  LGLAVGVACGMCLGWSLR----VCFGMLPKSKTSKTHTDTESEASILGDSGEYKMILVVR 72

Query: 76  NDLKMGKGKIAAQCSHATLGLYKKVLYRAPKALNRWEMCAQPKVVLKIESEEDMLVLQER 135
           NDLKMGKGK+AAQCSHA +  YK++  R P+ L +WE C QPKVV+K   EE ++ L   
Sbjct: 73  NDLKMGKGKVAAQCSHAAVSAYKQIQRRNPEMLKQWEYCGQPKVVVKAPDEETLIALLAH 132

Query: 136 AKSLKLPTHITIDAGRTQIAPNSRTVMAI-LGPVEVVDDVTGGLKL 180
           AK L L   +  DAGRTQIAP S+TV+ I  GP +++D VTG LKL
Sbjct: 133 AKMLGLTVSLIQDAGRTQIAPGSQTVLGIGPGPADLIDKVTGHLKL 178

Promotes caspase-independent apoptosis by regulating the function of two transcriptional regulators, AES and TLE1.
Homo sapiens (taxid: 9606)
EC: 3EC: .EC: 1EC: .EC: 1EC: .EC: 2EC: 9

>sp|Q8R2Y8|PTH2_MOUSE Peptidyl-tRNA hydrolase 2, mitochondrial OS=Mus musculus GN=Ptrh2 PE=2 SV=1

 Score =  139 bits (351), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 75/161 (46%), Positives = 99/161 (61%), Gaps = 6/161 (3%)

Query: 24  GKGCPACFFVSVRRAKNAAVANENKKNKAKEPLEIEKLADILDD---FKMVLVVRNDLKM 80
           G  C  C    +R   +  +  +N  ++A    E    A IL +   +KM+LVVR DLKM
Sbjct: 22  GVACGMCLGWGLR--SHLGMFPQNSTSEANRDTETGTEASILGESGEYKMILVVRTDLKM 79

Query: 81  GKGKIAAQCSHATLGLYKKVLYRAPKALNRWEMCAQPKVVLKIESEEDMLVLQERAKSLK 140
           GKGK+AAQCSHA +  YK+   R+P+ L  WE C QPKVV+K   E+ ++ L   AK+L 
Sbjct: 80  GKGKVAAQCSHAAVSAYKQTQRRSPQVLKEWEYCGQPKVVVKAPDEDTLIQLLTHAKTLG 139

Query: 141 LPTHITIDAGRTQIAPNSRTVMAI-LGPVEVVDDVTGGLKL 180
           L   +  DAGRTQI P SRTV+ I  GPVE++D+VTG LKL
Sbjct: 140 LTVSLIQDAGRTQIEPGSRTVLGIGPGPVELIDEVTGHLKL 180

The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 9

>sp|Q3ZBL5|PTH2_BOVIN Peptidyl-tRNA hydrolase 2, mitochondrial OS=Bos taurus GN=PTRH2 PE=2 SV=1

 Score =  133 bits (334), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 70/128 (54%), Positives = 87/128 (67%), Gaps = 4/128 (3%)

Query: 57  EIEKLADILDD---FKMVLVVRNDLKMGKGKIAAQCSHATLGLYKKVLYRAPKALNRWEM 113
           + E  A IL +   +KM+LVVRNDLKMGKGK+AAQCSHA +  YK++  R P+ L  WE 
Sbjct: 51  DTETEASILGESGEYKMILVVRNDLKMGKGKVAAQCSHAAVSAYKQIQRRNPELLKEWEY 110

Query: 114 CAQPKVVLKIESEEDMLVLQERAKSLKLPTHITIDAGRTQIAPNSRTVMAI-LGPVEVVD 172
           C QPKVV+K   EE ++ L   AK L L   +  DAGRTQIAP SRTV+ I  GP +++D
Sbjct: 111 CGQPKVVVKAPDEETLVELLTHAKVLGLTVSLIQDAGRTQIAPGSRTVLGIGPGPADLID 170

Query: 173 DVTGGLKL 180
            VTG LKL
Sbjct: 171 KVTGHLKL 178

The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis.

Bos taurus (taxid: 9913)

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 9

>sp|O97067|PTH2_DROME Probable peptidyl-tRNA hydrolase 2 OS=Drosophila melanogaster GN=CG1307 PE=2 SV=2

 Score =  125 bits (313), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 61/118 (51%), Positives = 84/118 (71%), Gaps = 3/118 (2%)

Query: 66  DDFKMVLVVRNDLKMGKGKIAAQCSHATLGLYKKVLYRAPKALNRWEMCAQPKVVLKIES 125
           D+FKMVLVVRNDLKMGKGKIAAQC H  +G Y++ + R P+ L  WE C   K+ +++ES
Sbjct: 70  DNFKMVLVVRNDLKMGKGKIAAQCGHGAVGAYQRAVVRTPRLLRSWENCGCAKIAVRVES 129

Query: 126 EEDMLVLQERAKSLKLPTHITIDAGRTQIAPNSRTVMAILGPVEV--VDDVTGGLKLL 181
           E +++ +++ A+  +L T +  DAGRTQI  NS+TV+A+ GP     +D VTG LKLL
Sbjct: 130 EAELMAIKKEAERQQLNTCLIRDAGRTQIEANSKTVLAV-GPAAAADIDRVTGHLKLL 186

The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis.

Drosophila melanogaster (taxid: 7227)

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 9

>sp|A4YD82|PTH_METS5 Peptidyl-tRNA hydrolase OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=pth PE=3 SV=1

 Score = 98.2 bits (243), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 54/117 (46%), Positives = 75/117 (64%), Gaps = 3/117 (2%)

Query: 68  FKMVLVVRNDLKMGKGKIAAQCSHATLGLYKKVLYRAP--KALNRWEMCAQPKVVLKIES 125
            KMV++VR D+ MGKGKIAAQ +HA + L    + R+     L+ W    QPKVV+K+ S
Sbjct: 1   MKMVVMVRTDINMGKGKIAAQVAHAAVSLVLDCMSRSSWRDWLDSWLHEGQPKVVVKVSS 60

Query: 126 EEDMLVLQERAKSLKLPTHITIDAGRTQIAPNSRTVMAI-LGPVEVVDDVTGGLKLL 181
            ED+L   ++A+S  LPT +  DAGRTQ+ P + T   I  GP +++D +TG LKLL
Sbjct: 61  LEDLLSRVDKARSQGLPTTVISDAGRTQVEPGTVTCAGIGPGPDDLIDKITGDLKLL 117

The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis.

Metallosphaera sedula (strain ATCC 51363 / DSM 5348) (taxid: 399549)

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 9

>sp|Q54ZD0|PTH2_DICDI Probable peptidyl-tRNA hydrolase 2 OS=Dictyostelium discoideum GN=pth2 PE=3 SV=1

 Score = 95.9 bits (237), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 57/128 (44%), Positives = 79/128 (61%), Gaps = 2/128 (1%)

Query: 54  EPLEIEKLADILDDFKMVLVVRNDLKMGKGKIAAQCSHATLGLYKKVLYRAPKALNRWEM 113
           +  EIE   +I  D K VLV+R DL M KGKI AQC HA+LG  +K L  + K L +WE 
Sbjct: 83  DDYEIEYDEEI-GDCKQVLVIRTDLGMTKGKIIAQCCHASLGARQKALKDSKKVLRQWEN 141

Query: 114 CAQPKVVLKIESEEDMLVLQERAKSLKLPTHITIDAGRTQIAPNSRTVMAI-LGPVEVVD 172
               K+ LK  S+E+++ L+ +AK L + +++ +D+G TQI   S TV+A+   P E VD
Sbjct: 142 FGCAKITLKANSKEELVDLRNKAKELGVVSYLVLDSGHTQIPSGSATVLAVGPAPKEAVD 201

Query: 173 DVTGGLKL 180
            VT  LKL
Sbjct: 202 AVTKHLKL 209

The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis.

Dictyostelium discoideum (taxid: 44689)

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 9

>sp|O76387|PTH2_CAEEL Probable peptidyl-tRNA hydrolase 2 OS=Caenorhabditis elegans GN=C24G6.8 PE=3 SV=1

 Score = 95.1 bits (235), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 56/116 (48%), Positives = 70/116 (60%), Gaps = 2/116 (1%)

Query: 68  FKMVLVVRNDLKMGKGKIAAQCSHATLGLYKKVLY--RAPKALNRWEMCAQPKVVLKIES 125
            KMVLV    LKMG GKIAAQ  HATLG+Y++ +       A+  W    Q K+V+K +S
Sbjct: 201 HKMVLVANMSLKMGTGKIAAQVGHATLGVYRQAMNSENGQNAIAAWTRHGQVKIVVKGQS 260

Query: 126 EEDMLVLQERAKSLKLPTHITIDAGRTQIAPNSRTVMAILGPVEVVDDVTGGLKLL 181
            E ++ L + AK      ++  DAG TQI   SRTV+ I G VE VD VTGGLKLL
Sbjct: 261 TEQLMDLCKVAKDAGCYYYLVQDAGYTQIPAGSRTVLGIFGTVEQVDSVTGGLKLL 316

The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis.

Caenorhabditis elegans (taxid: 6239)

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 9

>sp|Q976I0|PTH_SULTO Peptidyl-tRNA hydrolase OS=Sulfolobus tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7) GN=pth PE=3 SV=1

 Score = 94.7 bits (234), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 56/118 (47%), Positives = 75/118 (63%), Gaps = 5/118 (4%)

Query: 69  KMVLVVRNDLKMGKGKIAAQCSHATLGLYKKVLYRA----PKALNRWEMCAQPKVVLKIE 124
           KMV+VVR DL MGKGKIAAQ +HA + L   +L  +     + L +W    QPK+V+K+ 
Sbjct: 4   KMVIVVRTDLDMGKGKIAAQVAHAAVSLVLDILNSSNSLWKEWLYKWLEEGQPKIVVKVP 63

Query: 125 SEEDMLVLQERAKSLKLPTHITIDAGRTQIAPNSRTVMAI-LGPVEVVDDVTGGLKLL 181
           S +++    E+A  L LPT I  DAG+TQI P + T + I   PVE+VD +TG LKLL
Sbjct: 64  SLDELNKRYEKAIELNLPTTIIQDAGKTQIEPGTITCIGIGPAPVELVDKITGDLKLL 121

The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis.

Sulfolobus tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7) (taxid: 273063)

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 9

>sp|Q980V1|PTH_SULSO Peptidyl-tRNA hydrolase OS=Sulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=pth PE=1 SV=1

 Score = 94.0 bits (232), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 50/119 (42%), Positives = 77/119 (64%), Gaps = 5/119 (4%)

Query: 68  FKMVLVVRNDLKMGKGKIAAQCSHATLGLYKKVL----YRAPKALNRWEMCAQPKVVLKI 123
            KMV+VVR+D+KMGKGKIAAQ +HA + L   ++     R  + LN W    QPK+++K+
Sbjct: 2   IKMVIVVRSDIKMGKGKIAAQVAHAAVTLVVSIINSNNLRWKEWLNEWLHQGQPKIIVKV 61

Query: 124 ESEEDMLVLQERAKSLKLPTHITIDAGRTQIAPNSRTVMAI-LGPVEVVDDVTGGLKLL 181
            S ++++   ++A+++ LP  I  DAG+TQ+ P + T + I   P  +VD +TG LKLL
Sbjct: 62  NSLDEIISRAKKAETMNLPFSIIEDAGKTQLEPGTITCLGIGPAPENLVDSITGDLKLL 120

The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis.

Sulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) (taxid: 273057)

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 9

>sp|Q60363|PTH_METJA Peptidyl-tRNA hydrolase OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=pth PE=1 SV=1

 Score = 93.2 bits (230), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 51/116 (43%), Positives = 74/116 (63%), Gaps = 3/116 (2%)

Query: 68  FKMVLVVRNDLKMGKGKIAAQCSHATLGLYKKVLYRAPKALNRWEMCAQPKVVLKIESEE 127
            KMV+V+RNDL MGKGK+ AQ  HA +  +     + P+A++ W    Q KVV+K+ SE+
Sbjct: 1   MKMVVVIRNDLGMGKGKMVAQGGHAIIEAFLDAKRKNPRAVDEWLREGQKKVVVKVNSEK 60

Query: 128 DMLVLQERAKSLKLPTHITIDAGRTQIAPNSRTVMAILGPV--EVVDDVTGGLKLL 181
           +++ +  +A+S  LP  I  DAG TQ+ P + T +AI GP   E +D +TG LKLL
Sbjct: 61  ELIDIYNKARSEGLPCSIIRDAGHTQLEPGTLTAVAI-GPEKDEKIDKITGHLKLL 115

The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis.

Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (taxid: 243232)

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 9

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	181
449460720	181	PREDICTED: peptidyl-tRNA hydrolase 2, mi	0.994	0.994	0.834	3e-80
224128844	186	predicted protein [Populus trichocarpa]	0.994	0.967	0.806	4e-79
351722532	190	uncharacterized protein LOC100527794 [Gl	0.994	0.947	0.757	2e-75
225454777	181	PREDICTED: peptidyl-tRNA hydrolase 2, mi	0.988	0.988	0.788	3e-73
343172898	176	peptidyl-tRNA hydrolase II (PTH2) family	0.972	1.0	0.755	2e-71
343172896	176	peptidyl-tRNA hydrolase II (PTH2) family	0.972	1.0	0.75	7e-71
357473971	190	Peptidyl-tRNA hydrolase [Medicago trunca	0.988	0.942	0.743	5e-70
18418110	169	Peptidyl-tRNA hydrolase II (PTH2) family	0.922	0.988	0.752	7e-68
225454779	173	PREDICTED: peptidyl-tRNA hydrolase 2, mi	0.928	0.971	0.792	8e-68
224144705	134	predicted protein [Populus trichocarpa]	0.740	1.0	0.955	1e-67

>gi|449460720|ref|XP_004148093.1| PREDICTED: peptidyl-tRNA hydrolase 2, mitochondrial-like [Cucumis sativus] gi|449522171|ref|XP_004168101.1| PREDICTED: peptidyl-tRNA hydrolase 2, mitochondrial-like [Cucumis sativus]

 Score =  303 bits (775), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 151/181 (83%), Positives = 158/181 (87%), Gaps = 1/181 (0%)

Query: 2   MDLSWLSTILFGAGCLAFGYCIGKGCPACFFVSVRRAK-NAAVANENKKNKAKEPLEIEK 60
           MDL+WLS I+ GAGCL  GY IG   P   FV  + AK N +  N  KK+K KEPLE+E 
Sbjct: 1   MDLAWLSAIVVGAGCLVLGYYIGSKYPPRVFVKAKLAKSNESSRNGKKKDKTKEPLEVEN 60

Query: 61  LADILDDFKMVLVVRNDLKMGKGKIAAQCSHATLGLYKKVLYRAPKALNRWEMCAQPKVV 120
           LADILDDFKMVLVVRNDLKMGKGKIAAQCSHATLGLYKK+ YRAPKALNRWEMCAQPKVV
Sbjct: 61  LADILDDFKMVLVVRNDLKMGKGKIAAQCSHATLGLYKKLHYRAPKALNRWEMCAQPKVV 120

Query: 121 LKIESEEDMLVLQERAKSLKLPTHITIDAGRTQIAPNSRTVMAILGPVEVVDDVTGGLKL 180
           LKIESEEDMLVLQERAKSLKLPTHITIDAGRTQIAPNSRTVMAILGPVEVVDDVTGGLKL
Sbjct: 121 LKIESEEDMLVLQERAKSLKLPTHITIDAGRTQIAPNSRTVMAILGPVEVVDDVTGGLKL 180

Query: 181 L 181
           L
Sbjct: 181 L 181

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224128844|ref|XP_002328981.1| predicted protein [Populus trichocarpa] gi|222839215|gb|EEE77566.1| predicted protein [Populus trichocarpa]

 Score =  299 bits (765), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 150/186 (80%), Positives = 159/186 (85%), Gaps = 6/186 (3%)

Query: 2   MDLSWLSTILFGAGCLAFGYCIGKGCPACFFVS-----VRRAK-NAAVANENKKNKAKEP 55
           MDLSWLS IL GAGCLA GYCIG   P CFF+      VR    N +  + NK N +KEP
Sbjct: 1   MDLSWLSAILVGAGCLALGYCIGTRRPFCFFLRLTPKVVRDTNTNPSSHHGNKNNNSKEP 60

Query: 56  LEIEKLADILDDFKMVLVVRNDLKMGKGKIAAQCSHATLGLYKKVLYRAPKALNRWEMCA 115
            E +KLADILDDFKMVLVVRNDLKMGKGKIAAQCSHATLGLYKK+L+RAPKALNRWEMCA
Sbjct: 61  FETDKLADILDDFKMVLVVRNDLKMGKGKIAAQCSHATLGLYKKLLHRAPKALNRWEMCA 120

Query: 116 QPKVVLKIESEEDMLVLQERAKSLKLPTHITIDAGRTQIAPNSRTVMAILGPVEVVDDVT 175
           QPKVV+KIESEEDMLVLQ+RAKSL LPTHITIDAGRTQIAPNSRTVMAILGPV VVDDVT
Sbjct: 121 QPKVVVKIESEEDMLVLQDRAKSLNLPTHITIDAGRTQIAPNSRTVMAILGPVGVVDDVT 180

Query: 176 GGLKLL 181
           GGLKLL
Sbjct: 181 GGLKLL 186

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722532|ref|NP_001237503.1| uncharacterized protein LOC100527794 [Glycine max] gi|255633226|gb|ACU16969.1| unknown [Glycine max]

 Score =  286 bits (733), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 144/190 (75%), Positives = 160/190 (84%), Gaps = 10/190 (5%)

Query: 2   MDLSWLSTILFGAGCLAFGYCIGKGCPACFF----VSVRRAKNAAVANENK------KNK 51
           MDL+WLSTIL GAG LA GY IG   P  F     +S +  ++A++ N+N       K+K
Sbjct: 1   MDLTWLSTILVGAGYLALGYFIGSQYPPRFLFSHKLSTKHKEDASLLNDNDNKKRNTKSK 60

Query: 52  AKEPLEIEKLADILDDFKMVLVVRNDLKMGKGKIAAQCSHATLGLYKKVLYRAPKALNRW 111
            K+PLEIE+LA+ILDDFKM+LVVRNDLKMGKGKIAAQCSHATLGLYKK+L RA KALNRW
Sbjct: 61  LKDPLEIEQLAEILDDFKMILVVRNDLKMGKGKIAAQCSHATLGLYKKILRRASKALNRW 120

Query: 112 EMCAQPKVVLKIESEEDMLVLQERAKSLKLPTHITIDAGRTQIAPNSRTVMAILGPVEVV 171
           EM AQPKVV+KIESEEDML LQERAKSLKLPTHITIDAGRTQIAPNSRTVMAILGPVEVV
Sbjct: 121 EMSAQPKVVVKIESEEDMLALQERAKSLKLPTHITIDAGRTQIAPNSRTVMAILGPVEVV 180

Query: 172 DDVTGGLKLL 181
           D+VTGGLKLL
Sbjct: 181 DEVTGGLKLL 190

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225454777|ref|XP_002277013.1| PREDICTED: peptidyl-tRNA hydrolase 2, mitochondrial isoform 1 [Vitis vinifera] gi|297737314|emb|CBI26515.3| unnamed protein product [Vitis vinifera]

 Score =  279 bits (714), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 142/180 (78%), Positives = 153/180 (85%), Gaps = 1/180 (0%)

Query: 2   MDLSWLSTILFGAGCLAFGYCIGKGCPACFFVSVRRAKNAAVANE-NKKNKAKEPLEIEK 60
           MDL+WLS IL GAGCLA GY IG   PA F VS   AK+ AV  + NKKN+ ++  EIEK
Sbjct: 1   MDLTWLSAILVGAGCLALGYLIGTRHPARFLVSATLAKDTAVVGDANKKNQFQKLDEIEK 60

Query: 61  LADILDDFKMVLVVRNDLKMGKGKIAAQCSHATLGLYKKVLYRAPKALNRWEMCAQPKVV 120
           LADIL+DFKMVLVVRNDLKMGKGKIAAQCSHATLGLYKK+L RAPKALNRWE C Q KVV
Sbjct: 61  LADILEDFKMVLVVRNDLKMGKGKIAAQCSHATLGLYKKLLRRAPKALNRWENCGQVKVV 120

Query: 121 LKIESEEDMLVLQERAKSLKLPTHITIDAGRTQIAPNSRTVMAILGPVEVVDDVTGGLKL 180
           LK ESEEDMLVLQ RAKSL+LP HITIDAGRTQIAPNSRTVMAILGP ++VDDVTGGLKL
Sbjct: 121 LKTESEEDMLVLQGRAKSLQLPNHITIDAGRTQIAPNSRTVMAILGPADMVDDVTGGLKL 180

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|343172898|gb|AEL99152.1| peptidyl-tRNA hydrolase II (PTH2) family protein, partial [Silene latifolia]

 Score =  273 bits (699), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 136/180 (75%), Positives = 152/180 (84%), Gaps = 4/180 (2%)

Query: 2   MDLSWLSTILFGAGCLAFGYCIGKGCPACFFVSVRRAKNAAVANENKKNKAKEPLEIEKL 61
           +DL+WL+ +L GAGCL  GY +G    A F VS + A N +V+   KKN+A+EPLEIEKL
Sbjct: 1   LDLTWLTALLVGAGCLGLGYLVGARRQARFLVSTQ-ASNKSVS---KKNRAQEPLEIEKL 56

Query: 62  ADILDDFKMVLVVRNDLKMGKGKIAAQCSHATLGLYKKVLYRAPKALNRWEMCAQPKVVL 121
           ADI++DFKMVLVVRNDLKMGKGKIAAQCSHATLGL+KK+  RAPKALNRWEMC Q KVV+
Sbjct: 57  ADIIEDFKMVLVVRNDLKMGKGKIAAQCSHATLGLFKKLQNRAPKALNRWEMCGQVKVVV 116

Query: 122 KIESEEDMLVLQERAKSLKLPTHITIDAGRTQIAPNSRTVMAILGPVEVVDDVTGGLKLL 181
           K ESEEDML LQ RAKS  LPTHITIDAGRTQIAPNSRTVMAILGP E+VDDVTGGLKLL
Sbjct: 117 KTESEEDMLALQGRAKSTHLPTHITIDAGRTQIAPNSRTVMAILGPAEMVDDVTGGLKLL 176

Source: Silene latifolia

Species: Silene latifolia

Genus: Silene

Family: Caryophyllaceae

Order: Caryophyllales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|343172896|gb|AEL99151.1| peptidyl-tRNA hydrolase II (PTH2) family protein, partial [Silene latifolia]

 Score =  271 bits (694), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 135/180 (75%), Positives = 152/180 (84%), Gaps = 4/180 (2%)

Query: 2   MDLSWLSTILFGAGCLAFGYCIGKGCPACFFVSVRRAKNAAVANENKKNKAKEPLEIEKL 61
           +DL+WL+ +L GAGCL  GY +G    A F VS + A N +V+   KKN+A+EPLEIEKL
Sbjct: 1   LDLTWLTALLVGAGCLGLGYLVGARRQARFLVSTQ-ASNKSVS---KKNRAQEPLEIEKL 56

Query: 62  ADILDDFKMVLVVRNDLKMGKGKIAAQCSHATLGLYKKVLYRAPKALNRWEMCAQPKVVL 121
           ADI++DFKMVLVVRNDLKMGKGKIAAQCSHATLGL+KK+  RAPKAL+RWEMC Q KVV+
Sbjct: 57  ADIIEDFKMVLVVRNDLKMGKGKIAAQCSHATLGLFKKLQNRAPKALSRWEMCGQVKVVV 116

Query: 122 KIESEEDMLVLQERAKSLKLPTHITIDAGRTQIAPNSRTVMAILGPVEVVDDVTGGLKLL 181
           K ESEEDML LQ RAKS  LPTHITIDAGRTQIAPNSRTVMAILGP E+VDDVTGGLKLL
Sbjct: 117 KTESEEDMLALQGRAKSTHLPTHITIDAGRTQIAPNSRTVMAILGPAEMVDDVTGGLKLL 176

Source: Silene latifolia

Species: Silene latifolia

Genus: Silene

Family: Caryophyllaceae

Order: Caryophyllales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357473971|ref|XP_003607270.1| Peptidyl-tRNA hydrolase [Medicago truncatula] gi|355508325|gb|AES89467.1| Peptidyl-tRNA hydrolase [Medicago truncatula]

 Score =  268 bits (686), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 142/191 (74%), Positives = 157/191 (82%), Gaps = 12/191 (6%)

Query: 2   MDLSWLSTILFGAGCLAFGYCIGKGCPACF---FVSVRRAKNAAV--------ANENKKN 50
           M++SWLS IL GAG LA GY IG      F   F+   + K+A++          +N K 
Sbjct: 1   MEMSWLSAILVGAGYLALGYFIGSHKNFIFSQKFL-FSKDKDASLLNDDKKSKQKKNSKP 59

Query: 51  KAKEPLEIEKLADILDDFKMVLVVRNDLKMGKGKIAAQCSHATLGLYKKVLYRAPKALNR 110
           K K+ LE+E+LADIL+DFKM+LVVRNDLKMGKGKIAAQCSHATLGLYKKVLYRAPKALNR
Sbjct: 60  KIKDSLEVEQLADILEDFKMILVVRNDLKMGKGKIAAQCSHATLGLYKKVLYRAPKALNR 119

Query: 111 WEMCAQPKVVLKIESEEDMLVLQERAKSLKLPTHITIDAGRTQIAPNSRTVMAILGPVEV 170
           WEM AQPKVV+KIESEEDML LQERAKSLKLPTHITIDAGRTQIAPNSRTVMAILGPVEV
Sbjct: 120 WEMSAQPKVVVKIESEEDMLALQERAKSLKLPTHITIDAGRTQIAPNSRTVMAILGPVEV 179

Query: 171 VDDVTGGLKLL 181
           VD+VTGGLKLL
Sbjct: 180 VDEVTGGLKLL 190

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18418110|ref|NP_568340.1| Peptidyl-tRNA hydrolase II (PTH2) family protein [Arabidopsis thaliana] gi|98960911|gb|ABF58939.1| At5g16870 [Arabidopsis thaliana] gi|332004968|gb|AED92351.1| Peptidyl-tRNA hydrolase II (PTH2) family protein [Arabidopsis thaliana]

 Score =  261 bits (668), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 137/182 (75%), Positives = 150/182 (82%), Gaps = 15/182 (8%)

Query: 2   MDLSWLSTILFGAGCLAFGYCIGKGCPACFFVSVRRAKN--AAVANENKKNKAKEPLEIE 59
           MDL+WLS ++ GA   A GYCIG           RR+K   AAV  + K   +K PLEIE
Sbjct: 1   MDLTWLSALIVGA---ALGYCIG----------TRRSKPVVAAVDKDIKTQSSKSPLEIE 47

Query: 60  KLADILDDFKMVLVVRNDLKMGKGKIAAQCSHATLGLYKKVLYRAPKALNRWEMCAQPKV 119
           KLADILDDFKMVLVVRNDLKMGKGKIAAQCSHATLGLYKK++ RAPKAL+ WE CAQPKV
Sbjct: 48  KLADILDDFKMVLVVRNDLKMGKGKIAAQCSHATLGLYKKLVRRAPKALDCWEECAQPKV 107

Query: 120 VLKIESEEDMLVLQERAKSLKLPTHITIDAGRTQIAPNSRTVMAILGPVEVVDDVTGGLK 179
           V+KIE E++ML LQERAKSLKLPTHITIDAGRTQIAPNSRTVMAILGPVEVVD+VTGGLK
Sbjct: 108 VVKIEDEDEMLELQERAKSLKLPTHITIDAGRTQIAPNSRTVMAILGPVEVVDEVTGGLK 167

Query: 180 LL 181
           LL
Sbjct: 168 LL 169

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225454779|ref|XP_002277299.1| PREDICTED: peptidyl-tRNA hydrolase 2, mitochondrial isoform 2 [Vitis vinifera]

 Score =  261 bits (667), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 134/169 (79%), Positives = 144/169 (85%), Gaps = 1/169 (0%)

Query: 13  GAGCLAFGYCIGKGCPACFFVSVRRAKNAAVANE-NKKNKAKEPLEIEKLADILDDFKMV 71
           GAGCLA GY IG   PA F VS   AK+ AV  + NKKN+ ++  EIEKLADIL+DFKMV
Sbjct: 4   GAGCLALGYLIGTRHPARFLVSATLAKDTAVVGDANKKNQFQKLDEIEKLADILEDFKMV 63

Query: 72  LVVRNDLKMGKGKIAAQCSHATLGLYKKVLYRAPKALNRWEMCAQPKVVLKIESEEDMLV 131
           LVVRNDLKMGKGKIAAQCSHATLGLYKK+L RAPKALNRWE C Q KVVLK ESEEDMLV
Sbjct: 64  LVVRNDLKMGKGKIAAQCSHATLGLYKKLLRRAPKALNRWENCGQVKVVLKTESEEDMLV 123

Query: 132 LQERAKSLKLPTHITIDAGRTQIAPNSRTVMAILGPVEVVDDVTGGLKL 180
           LQ RAKSL+LP HITIDAGRTQIAPNSRTVMAILGP ++VDDVTGGLKL
Sbjct: 124 LQGRAKSLQLPNHITIDAGRTQIAPNSRTVMAILGPADMVDDVTGGLKL 172

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224144705|ref|XP_002325383.1| predicted protein [Populus trichocarpa] gi|222862258|gb|EEE99764.1| predicted protein [Populus trichocarpa]

 Score =  261 bits (666), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 128/134 (95%), Positives = 132/134 (98%)

Query: 48  KKNKAKEPLEIEKLADILDDFKMVLVVRNDLKMGKGKIAAQCSHATLGLYKKVLYRAPKA 107
           KKNK+KEP EI+KLADILDDFKMVLVVRNDLKMGKGKIAAQCSHATLGLYKK+L RAPKA
Sbjct: 1   KKNKSKEPFEIDKLADILDDFKMVLVVRNDLKMGKGKIAAQCSHATLGLYKKLLNRAPKA 60

Query: 108 LNRWEMCAQPKVVLKIESEEDMLVLQERAKSLKLPTHITIDAGRTQIAPNSRTVMAILGP 167
           LNRWEMCAQPKVV+KIESEEDMLVLQERAKSLKLPTHITIDAGRTQIAPNSRTVMAILGP
Sbjct: 61  LNRWEMCAQPKVVVKIESEEDMLVLQERAKSLKLPTHITIDAGRTQIAPNSRTVMAILGP 120

Query: 168 VEVVDDVTGGLKLL 181
           VEVVDDVTGGLKLL
Sbjct: 121 VEVVDDVTGGLKLL 134

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	181
TAIR|locus:2148111	169	AT5G16870 [Arabidopsis thalian	0.933	1.0	0.716	1.3e-59
TAIR|locus:2075537	179	AT3G03010 [Arabidopsis thalian	0.977	0.988	0.697	1.4e-57
UNIPROTKB|J3KQ48	180	PTRH2 "Peptidyl-tRNA hydrolase	0.685	0.688	0.546	1.4e-30
UNIPROTKB|Q9Y3E5	179	PTRH2 "Peptidyl-tRNA hydrolase	0.685	0.692	0.546	1.4e-30
UNIPROTKB|F1S227	179	LOC100519562 "Uncharacterized	0.629	0.636	0.582	1.4e-30
UNIPROTKB|E2RND8	179	PTRH2 "Uncharacterized protein	0.629	0.636	0.573	3.8e-30
RGD|1306819	181	Ptrh2 "peptidyl-tRNA hydrolase	0.629	0.629	0.565	3.8e-30
UNIPROTKB|E1BWS4	171	PTRH2 "Uncharacterized protein	0.629	0.666	0.582	4.9e-30
MGI|MGI:2444848	181	Ptrh2 "peptidyl-tRNA hydrolase	0.629	0.629	0.565	4.9e-30
UNIPROTKB|Q3ZBL5	179	PTRH2 "Peptidyl-tRNA hydrolase	0.629	0.636	0.573	6.2e-30

TAIR|locus:2148111 AT5G16870 [Arabidopsis thaliana (taxid:3702)]

 Score = 611 (220.1 bits), Expect = 1.3e-59, P = 1.3e-59
 Identities = 129/180 (71%), Positives = 139/180 (77%)

Query:     2 MDLSWLSTILFGAGCLAFGYCIGKGCPACFFVSXXXXXXXXXXXXXXXXXXXXPLEIEKL 61
             MDL+WLS ++ GA   A GYCIG                              PLEIEKL
Sbjct:     1 MDLTWLSALIVGA---ALGYCIG--------TRRSKPVVAAVDKDIKTQSSKSPLEIEKL 49

Query:    62 ADILDDFKMVLVVRNDLKMGKGKIAAQCSHATLGLYKKVLYRAPKALNRWEMCAQPKVVL 121
             ADILDDFKMVLVVRNDLKMGKGKIAAQCSHATLGLYKK++ RAPKAL+ WE CAQPKVV+
Sbjct:    50 ADILDDFKMVLVVRNDLKMGKGKIAAQCSHATLGLYKKLVRRAPKALDCWEECAQPKVVV 109

Query:   122 KIESEEDMLVLQERAKSLKLPTHITIDAGRTQIAPNSRTVMAILGPVEVVDDVTGGLKLL 181
             KIE E++ML LQERAKSLKLPTHITIDAGRTQIAPNSRTVMAILGPVEVVD+VTGGLKLL
Sbjct:   110 KIEDEDEMLELQERAKSLKLPTHITIDAGRTQIAPNSRTVMAILGPVEVVDEVTGGLKLL 169

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

TAIR|locus:2075537 AT3G03010 [Arabidopsis thaliana (taxid:3702)]

 Score = 592 (213.5 bits), Expect = 1.4e-57, P = 1.4e-57
 Identities = 127/182 (69%), Positives = 138/182 (75%)

Query:     2 MDLSWL-STILFGAGCLAFGYCIGK-GCPACFFVSXXXXXXXXXXXXXXXXXXXXPLEIE 59
             MDL WL S +L GA   A GY I         F+S                    PLEIE
Sbjct:     1 MDLVWLLSVLLVGA---ALGYYISTLRQTRRIFLSSKSVAIDAGSSGNKKTKSKEPLEIE 57

Query:    60 KLADILDDFKMVLVVRNDLKMGKGKIAAQCSHATLGLYKKVLYRAPKALNRWEMCAQPKV 119
             KLAD   +FKMVLVVRNDLKMGKGKIAAQCSHATLGLYKK+L RAPKALNRWE CAQPKV
Sbjct:    58 KLADFRKNFKMVLVVRNDLKMGKGKIAAQCSHATLGLYKKLLQRAPKALNRWEYCAQPKV 117

Query:   120 VLKIESEEDMLVLQERAKSLKLPTHITIDAGRTQIAPNSRTVMAILGPVEVVDDVTGGLK 179
             V+KIESEE+MLVLQERAK+LKLPTHITIDAG+TQIAPNSRTVMAILGPV+ VD+VTGGLK
Sbjct:   118 VVKIESEEEMLVLQERAKTLKLPTHITIDAGKTQIAPNSRTVMAILGPVDNVDEVTGGLK 177

Query:   180 LL 181
             L+
Sbjct:   178 LM 179

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

UNIPROTKB|J3KQ48 PTRH2 "Peptidyl-tRNA hydrolase 2, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 337 (123.7 bits), Expect = 1.4e-30, P = 1.4e-30
 Identities = 70/128 (54%), Positives = 88/128 (68%)

Query:    57 EIEKLADILDD---FKMVLVVRNDLKMGKGKIAAQCSHATLGLYKKVLYRAPKALNRWEM 113
             + E  A IL D   +KM+LVVRNDLKMGKGK+AAQCSHA +  YK++  R P+ L +WE 
Sbjct:    52 DTESEASILGDSGEYKMILVVRNDLKMGKGKVAAQCSHAAVSAYKQIQRRNPEMLKQWEY 111

Query:   114 CAQPKVVLKIESEEDMLVLQERAKSLKLPTHITIDAGRTQIAPNSRTVMAI-LGPVEVVD 172
             C QPKVV+K   EE ++ L   AK L L   +  DAGRTQIAP S+TV+ I  GP +++D
Sbjct:   112 CGQPKVVVKAPDEETLIALLAHAKMLGLTVSLIQDAGRTQIAPGSQTVLGIGPGPADLID 171

Query:   173 DVTGGLKL 180
              VTG LKL
Sbjct:   172 KVTGHLKL 179

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=IEA

UNIPROTKB|Q9Y3E5 PTRH2 "Peptidyl-tRNA hydrolase 2, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 337 (123.7 bits), Expect = 1.4e-30, P = 1.4e-30
 Identities = 70/128 (54%), Positives = 88/128 (68%)

Query:    57 EIEKLADILDD---FKMVLVVRNDLKMGKGKIAAQCSHATLGLYKKVLYRAPKALNRWEM 113
             + E  A IL D   +KM+LVVRNDLKMGKGK+AAQCSHA +  YK++  R P+ L +WE 
Sbjct:    51 DTESEASILGDSGEYKMILVVRNDLKMGKGKVAAQCSHAAVSAYKQIQRRNPEMLKQWEY 110

Query:   114 CAQPKVVLKIESEEDMLVLQERAKSLKLPTHITIDAGRTQIAPNSRTVMAI-LGPVEVVD 172
             C QPKVV+K   EE ++ L   AK L L   +  DAGRTQIAP S+TV+ I  GP +++D
Sbjct:   111 CGQPKVVVKAPDEETLIALLAHAKMLGLTVSLIQDAGRTQIAPGSQTVLGIGPGPADLID 170

Query:   173 DVTGGLKL 180
              VTG LKL
Sbjct:   171 KVTGHLKL 178

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IMP;IDA

GO:0010629 "negative regulation of gene expression" evidence=IMP

GO:0005829 "cytosol" evidence=IMP

GO:2000210 "positive regulation of anoikis" evidence=IMP

GO:2000811 "negative regulation of anoikis" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|F1S227 LOC100519562 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 337 (123.7 bits), Expect = 1.4e-30, P = 1.4e-30
 Identities = 67/115 (58%), Positives = 84/115 (73%)

Query:    67 DFKMVLVVRNDLKMGKGKIAAQCSHATLGLYKKVLYRAPKALNRWEMCAQPKVVLKIESE 126
             ++KM+LVVRNDLKMGKGK+AAQCSHA +  YK++  R P+ L +WE C QPKVV+K   E
Sbjct:    64 EYKMILVVRNDLKMGKGKVAAQCSHAAVSAYKQIQRRNPELLQQWEYCGQPKVVVKAPDE 123

Query:   127 EDMLVLQERAKSLKLPTHITIDAGRTQIAPNSRTVMAI-LGPVEVVDDVTGGLKL 180
             E ++ L   AK L L   +  DAGRTQIAP SRTV+ I  GPV+++D VTG LKL
Sbjct:   124 ETLVELLTHAKMLGLTVSLIQDAGRTQIAPGSRTVLGIGPGPVDLIDKVTGHLKL 178

GO:2000811 "negative regulation of anoikis" evidence=IEA

GO:2000210 "positive regulation of anoikis" evidence=IEA

GO:0010629 "negative regulation of gene expression" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=IEA

UNIPROTKB|E2RND8 PTRH2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 333 (122.3 bits), Expect = 3.8e-30, P = 3.8e-30
 Identities = 66/115 (57%), Positives = 83/115 (72%)

Query:    67 DFKMVLVVRNDLKMGKGKIAAQCSHATLGLYKKVLYRAPKALNRWEMCAQPKVVLKIESE 126
             ++KM+LVVRNDLKMGKGK+AAQCSHA +  YK++  R P+ L +WE C QPKVV+K   E
Sbjct:    64 EYKMILVVRNDLKMGKGKVAAQCSHAAVSAYKQIQRRNPELLKQWEYCGQPKVVVKAPDE 123

Query:   127 EDMLVLQERAKSLKLPTHITIDAGRTQIAPNSRTVMAI-LGPVEVVDDVTGGLKL 180
             E ++ L   AK L L   +  DAGRTQIAP SRTV+ I  GP +++D VTG LKL
Sbjct:   124 ETLVELLTHAKMLGLTVSLIQDAGRTQIAPGSRTVLGIGPGPADLIDKVTGHLKL 178

GO:2000811 "negative regulation of anoikis" evidence=IEA

GO:2000210 "positive regulation of anoikis" evidence=IEA

GO:0010629 "negative regulation of gene expression" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=IEA

RGD|1306819 Ptrh2 "peptidyl-tRNA hydrolase 2" [Rattus norvegicus (taxid:10116)]

 Score = 333 (122.3 bits), Expect = 3.8e-30, P = 3.8e-30
 Identities = 65/115 (56%), Positives = 83/115 (72%)

Query:    67 DFKMVLVVRNDLKMGKGKIAAQCSHATLGLYKKVLYRAPKALNRWEMCAQPKVVLKIESE 126
             ++KM+LVVR DLKMGKGK+AAQCSHA +  YK++  R P+ L  WE C QPKVV+K   E
Sbjct:    66 EYKMILVVRTDLKMGKGKVAAQCSHAAVSAYKQIQRRNPQVLKEWEYCGQPKVVVKAPDE 125

Query:   127 EDMLVLQERAKSLKLPTHITIDAGRTQIAPNSRTVMAI-LGPVEVVDDVTGGLKL 180
             + ++ L   AK+L L   +  DAGRTQI P SRTV+ I  GPVE++D+VTG LKL
Sbjct:   126 DSLIQLLTHAKALGLTVSLIQDAGRTQIEPGSRTVLGIGPGPVELIDEVTGHLKL 180

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0005829 "cytosol" evidence=IEA;ISO

GO:0010629 "negative regulation of gene expression" evidence=IEA;ISO

GO:2000210 "positive regulation of anoikis" evidence=IEA;ISO

GO:2000811 "negative regulation of anoikis" evidence=IEA;ISO

UNIPROTKB|E1BWS4 PTRH2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 332 (121.9 bits), Expect = 4.9e-30, P = 4.9e-30
 Identities = 67/115 (58%), Positives = 83/115 (72%)

Query:    67 DFKMVLVVRNDLKMGKGKIAAQCSHATLGLYKKVLYRAPKALNRWEMCAQPKVVLKIESE 126
             +FKMVL+VRNDLKMGKGK+AAQCSHA +  YK++  R P+ L +WE C QPKVVLK   E
Sbjct:    56 EFKMVLIVRNDLKMGKGKVAAQCSHAAVSAYKQIQRRNPELLKQWEYCGQPKVVLKAPDE 115

Query:   127 EDMLVLQERAKSLKLPTHITIDAGRTQIAPNSRTVMAI-LGPVEVVDDVTGGLKL 180
             E ++ L   AK L L   +  DAGRTQIAP S+TV+ I  GP +V+D V+G LKL
Sbjct:   116 ETLIQLLIDAKRLGLTVSLVQDAGRTQIAPGSQTVLGIGPGPADVIDKVSGHLKL 170

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0010629 "negative regulation of gene expression" evidence=IEA

GO:2000210 "positive regulation of anoikis" evidence=IEA

GO:2000811 "negative regulation of anoikis" evidence=IEA

MGI|MGI:2444848 Ptrh2 "peptidyl-tRNA hydrolase 2" [Mus musculus (taxid:10090)]

 Score = 332 (121.9 bits), Expect = 4.9e-30, P = 4.9e-30
 Identities = 65/115 (56%), Positives = 83/115 (72%)

Query:    67 DFKMVLVVRNDLKMGKGKIAAQCSHATLGLYKKVLYRAPKALNRWEMCAQPKVVLKIESE 126
             ++KM+LVVR DLKMGKGK+AAQCSHA +  YK+   R+P+ L  WE C QPKVV+K   E
Sbjct:    66 EYKMILVVRTDLKMGKGKVAAQCSHAAVSAYKQTQRRSPQVLKEWEYCGQPKVVVKAPDE 125

Query:   127 EDMLVLQERAKSLKLPTHITIDAGRTQIAPNSRTVMAI-LGPVEVVDDVTGGLKL 180
             + ++ L   AK+L L   +  DAGRTQI P SRTV+ I  GPVE++D+VTG LKL
Sbjct:   126 DTLIQLLTHAKTLGLTVSLIQDAGRTQIEPGSRTVLGIGPGPVELIDEVTGHLKL 180

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005829 "cytosol" evidence=ISO

GO:0008152 "metabolic process" evidence=IEA

GO:0010629 "negative regulation of gene expression" evidence=ISO

GO:0016787 "hydrolase activity" evidence=IEA

GO:2000210 "positive regulation of anoikis" evidence=ISO

GO:2000811 "negative regulation of anoikis" evidence=ISO

UNIPROTKB|Q3ZBL5 PTRH2 "Peptidyl-tRNA hydrolase 2, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 331 (121.6 bits), Expect = 6.2e-30, P = 6.2e-30
 Identities = 66/115 (57%), Positives = 82/115 (71%)

Query:    67 DFKMVLVVRNDLKMGKGKIAAQCSHATLGLYKKVLYRAPKALNRWEMCAQPKVVLKIESE 126
             ++KM+LVVRNDLKMGKGK+AAQCSHA +  YK++  R P+ L  WE C QPKVV+K   E
Sbjct:    64 EYKMILVVRNDLKMGKGKVAAQCSHAAVSAYKQIQRRNPELLKEWEYCGQPKVVVKAPDE 123

Query:   127 EDMLVLQERAKSLKLPTHITIDAGRTQIAPNSRTVMAI-LGPVEVVDDVTGGLKL 180
             E ++ L   AK L L   +  DAGRTQIAP SRTV+ I  GP +++D VTG LKL
Sbjct:   124 ETLVELLTHAKVLGLTVSLIQDAGRTQIAPGSRTVLGIGPGPADLIDKVTGHLKL 178

GO:0005739 "mitochondrion" evidence=IEA

GO:2000811 "negative regulation of anoikis" evidence=IEA

GO:2000210 "positive regulation of anoikis" evidence=IEA

GO:0010629 "negative regulation of gene expression" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8R2Y8	PTH2_MOUSE	3, ., 1, ., 1, ., 2, 9	0.4658	0.8563	0.8563	yes	no
Q3ZBL5	PTH2_BOVIN	3, ., 1, ., 1, ., 2, 9	0.5468	0.6850	0.6927	yes	no
Q9Y3E5	PTH2_HUMAN	3, ., 1, ., 1, ., 2, 9	0.4698	0.8729	0.8826	yes	no
O97067	PTH2_DROME	3, ., 1, ., 1, ., 2, 9	0.5169	0.6353	0.6182	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.1.1.29	0.914
3rd Layer	3.1.1	0.921

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_Genewise1_v1.C_870004	hypothetical protein (186 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.X.2543.1	hypothetical protein (141 aa)			•						0.457
	gw1.II.1883.1	RecName- Full=Proteasome subunit alpha type; EC=3.4.25.1;; The proteasome is a multicatalytic p [...] (242 aa)			•						0.444
	estExt_Genewise1_v1.C_LG_V1393	RecName- Full=Proteasome subunit alpha type; EC=3.4.25.1;; The proteasome is a multicatalytic p [...] (241 aa)			•						0.437
	gw1.70.125.1	annotation not avaliable (139 aa)			•						0.423
	gw1.II.4131.1	hypothetical protein (73 aa)			•						0.415

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	181
cd02430	115	cd02430, PTH2, Peptidyl-tRNA hydrolase, type 2 (PT	1e-61
pfam01981	116	pfam01981, PTH2, Peptidyl-tRNA hydrolase PTH2	8e-58
cd02407	115	cd02407, PTH2_family, Peptidyl-tRNA hydrolase, typ	2e-55
PRK04322	113	PRK04322, PRK04322, peptidyl-tRNA hydrolase; Provi	2e-42
COG1990	122	COG1990, pth2, Peptidyl-tRNA hydrolase [Translatio	1e-36
TIGR00283	115	TIGR00283, arch_pth2, peptidyl-tRNA hydrolase	6e-35

>gnl|CDD|239108 cd02430, PTH2, Peptidyl-tRNA hydrolase, type 2 (PTH2)

 Score =  186 bits (474), Expect = 1e-61
 Identities = 71/115 (61%), Positives = 87/115 (75%), Gaps = 1/115 (0%)

Query: 68  FKMVLVVRNDLKMGKGKIAAQCSHATLGLYKKVLYRAPKALNRWEMCAQPKVVLKIESEE 127
           +KMVLVVRNDLKMGKGKIAAQC+HA LG YKK +   P+ L  WE   Q K+VLK+ SEE
Sbjct: 1   YKMVLVVRNDLKMGKGKIAAQCAHAALGAYKKAMKSNPELLRAWEREGQKKIVLKVNSEE 60

Query: 128 DMLVLQERAKSLKLPTHITIDAGRTQIAPNSRTVMAIL-GPVEVVDDVTGGLKLL 181
           ++L L+++AKSL LPT +  DAGRTQIAP + TV+ I   P E++D VTG LKLL
Sbjct: 61  ELLELKKKAKSLGLPTSLIQDAGRTQIAPGTITVLGIGPAPEELIDKVTGHLKLL 115

Peptidyl-tRNA hydrolase (PTH) activity releases tRNA from the premature translation termination product peptidyl-tRNA, therefore allowing the tRNA and peptide to be reused in protein synthesis. PTH2 is present in archaea and eukaryotes. Length = 115

>gnl|CDD|190182 pfam01981, PTH2, Peptidyl-tRNA hydrolase PTH2

 Score =  176 bits (449), Expect = 8e-58
 Identities = 70/116 (60%), Positives = 86/116 (74%), Gaps = 1/116 (0%)

Query: 67  DFKMVLVVRNDLKMGKGKIAAQCSHATLGLYKKVLYRAPKALNRWEMCAQPKVVLKIESE 126
           ++KMVLVVR DLKMGKGKIAAQC+HA +G YKK L   P+ L  W    Q K+VLK+ SE
Sbjct: 1   EYKMVLVVRTDLKMGKGKIAAQCAHAAVGAYKKALKANPELLKAWLREGQKKIVLKVNSE 60

Query: 127 EDMLVLQERAKSLKLPTHITIDAGRTQIAPNSRTVMAI-LGPVEVVDDVTGGLKLL 181
           E++L L+E+AKSL LPT +  DAGRTQIAP + TV+ I   P E++D VTG LKLL
Sbjct: 61  EELLELKEKAKSLGLPTSLIQDAGRTQIAPGTVTVLGIGPAPKELIDKVTGHLKLL 116

Peptidyl-tRNA hydrolases are enzymes that release tRNAs from peptidyl-tRNA during translation. Length = 116

>gnl|CDD|239091 cd02407, PTH2_family, Peptidyl-tRNA hydrolase, type 2 (PTH2)_like

 Score =  170 bits (433), Expect = 2e-55
 Identities = 69/115 (60%), Positives = 82/115 (71%), Gaps = 1/115 (0%)

Query: 68  FKMVLVVRNDLKMGKGKIAAQCSHATLGLYKKVLYRAPKALNRWEMCAQPKVVLKIESEE 127
           +KMV+VVRNDLKMGKGKIAAQC+HA L  YKK +   P  L  WE+  Q KVVLK+ SEE
Sbjct: 1   YKMVIVVRNDLKMGKGKIAAQCAHAALAAYKKAMKDPPTLLRAWELEGQKKVVLKVPSEE 60

Query: 128 DMLVLQERAKSLKLPTHITIDAGRTQIAPNSRTVMAIL-GPVEVVDDVTGGLKLL 181
           ++L L ++AK L LP  +  DAGRTQI P + TV+AI   P E VD VTG LKLL
Sbjct: 61  ELLELAKKAKELGLPHSLIQDAGRTQIPPGTPTVLAIGPAPKEKVDKVTGHLKLL 115

Peptidyl-tRNA hydrolase activity releases tRNA from the premature translation termination product peptidyl-tRNA. Two structurally different enzymes have been reported to encode such activity, Pth present in bacteria and eukaryotes and Pth2 present in archaea and eukaryotes. Length = 115

>gnl|CDD|235280 PRK04322, PRK04322, peptidyl-tRNA hydrolase; Provisional

 Score =  137 bits (348), Expect = 2e-42
 Identities = 56/114 (49%), Positives = 74/114 (64%), Gaps = 3/114 (2%)

Query: 70  MVLVVRNDLKMGKGKIAAQCSHATLGLYKKVLYRAPKALNRWEMCAQPKVVLKIESEEDM 129
            V+VVR DLKMGKGK+AAQ +HA +  Y+K      + L  W    Q KVVLK+ SEE++
Sbjct: 1   QVIVVRTDLKMGKGKLAAQVAHAAVSAYEKADKSNREWLEEWLNEGQKKVVLKVNSEEEL 60

Query: 130 LVLQERAKSLKLPTHITIDAGRTQIAPNSRTVMAILGP--VEVVDDVTGGLKLL 181
           L L+E+A+ L LPT +  DAG TQ+ P + T + I GP   E +D +TG LKLL
Sbjct: 61  LELKEKAERLGLPTALIRDAGLTQLPPGTVTALGI-GPAPEEKIDKITGDLKLL 113

Length = 113

>gnl|CDD|224901 COG1990, pth2, Peptidyl-tRNA hydrolase [Translation, ribosomal structure and biogenesis]

 Score =  123 bits (310), Expect = 1e-36
 Identities = 56/118 (47%), Positives = 78/118 (66%), Gaps = 3/118 (2%)

Query: 67  DFKMVLVVRNDLKMGKGKIAAQCSHATLGLYKKVL--YRAPKALNRWEMCAQPKVVLKIE 124
            +KMV+VVR+DLKM KGK+AAQ +HA +   K  +      + L+ W    Q K+VLK+ 
Sbjct: 5   QYKMVIVVRDDLKMSKGKLAAQVAHAAVDAAKLAIKSTELDEWLDEWLREGQKKIVLKVG 64

Query: 125 SEEDMLVLQERAKSLKLPTHITIDAGRTQIAPNSRTVMAI-LGPVEVVDDVTGGLKLL 181
           S +++L L ++A+SL LPT +  DAGRTQI P + TV+ I   P EV+D +TG LKLL
Sbjct: 65  SLDELLELHQKAESLGLPTALIRDAGRTQIPPGTITVLGIGPAPEEVIDKITGDLKLL 122

Length = 122

>gnl|CDD|161803 TIGR00283, arch_pth2, peptidyl-tRNA hydrolase

 Score =  118 bits (297), Expect = 6e-35
 Identities = 54/115 (46%), Positives = 72/115 (62%), Gaps = 3/115 (2%)

Query: 69  KMVLVVRNDLKMGKGKIAAQCSHATLGLYKKVLYRAPKALNRWEMCAQPKVVLKIESEED 128
           KMV+V+R+DL MGKGKIAAQ  HA +  + K   + P    +W    Q KVVLK+ S E+
Sbjct: 2   KMVIVIRDDLGMGKGKIAAQVCHAAIIGFLKSKRKNPSLRRKWLDEGQKKVVLKVNSLEE 61

Query: 129 MLVLQERAKSLKLPTHITIDAGRTQIAPNSRTVMAILGPV--EVVDDVTGGLKLL 181
           +L +  +A+SL L T +  DAG TQI P + T + I GP   E +D +TG LKLL
Sbjct: 62  LLEIYHKAESLGLVTGLIRDAGHTQIPPGTITAVGI-GPDEDEKIDKITGDLKLL 115

This model describes an archaeal/eukaryotic form of peptidyl-tRNA hydrolase. Most bacterial forms are described by TIGR00447 [Protein synthesis, Other]. Length = 115

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	181
KOG3282	190	consensus Uncharacterized conserved protein [Funct	100.0
TIGR00283	115	arch_pth2 peptidyl-tRNA hydrolase. This model desc	100.0
cd02430	115	PTH2 Peptidyl-tRNA hydrolase, type 2 (PTH2). Pepti	100.0
PF01981	116	PTH2: Peptidyl-tRNA hydrolase PTH2; InterPro: IPR0	100.0
PRK04322	113	peptidyl-tRNA hydrolase; Provisional	100.0
cd02407	115	PTH2_family Peptidyl-tRNA hydrolase, type 2 (PTH2)	100.0
COG1990	122	pth2 Peptidyl-tRNA hydrolase [Translation, ribosom	100.0
cd02429	116	PTH2_like Peptidyl-tRNA hydrolase, type 2 (PTH2)_l	100.0
KOG3305	121	consensus Uncharacterized conserved protein [Funct	99.79
PF09391	133	DUF2000: Protein of unknown function (DUF2000); In	98.32
COG4954	135	Uncharacterized protein conserved in bacteria [Fun	93.42

>KOG3282 consensus Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=1.2e-52  Score=343.43  Aligned_cols=175  Identities=53%  Similarity=0.817  Sum_probs=148.0

Q ss_pred             CchhHHHH-----HHHHHHHhHhhhhcccCCCCcccchhhhhhhhhhhc----cccccccCChHHHhhhccCCCCeEEEE
Q 030232            2 MDLSWLST-----ILFGAGCLAFGYCIGKGCPACFFVSVRRAKNAAVAN----ENKKNKAKEPLEIEKLADILDDFKMVL   72 (181)
Q Consensus         2 ~~~~~~~~-----~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~kmvl   72 (181)
                      ||..|+.+     ++++   +++||++|.....++-.... +. .+...    ++..++++.+.|.+.+++..+++||||
T Consensus         6 ~~~~~~~~~~~~~~~v~---~a~g~~~~~~~~i~~ai~~~-~~-~~~~~~~~~~s~~~~sk~~~e~~~l~~~~~~~KMvL   80 (190)
T KOG3282|consen    6 VNSEYLIALRQLGLAVG---AAVGACIGTSLRIGFAIASI-SD-KSVASPFDESSVSSDSKASSESEVLGDLKGNFKMVL   80 (190)
T ss_pred             ccHHHHhhhHhhhHHHH---HHHHHHhhhceeeehhhhhh-hh-hhccCccccccccccccchhhhhcccCcCCceEEEE
Confidence            56666653     4444   57999999743333211111 11 11111    233455777888899999999999999


Q ss_pred             EEeCCCCCCcchhhhHhhHHHHHHHHHHHhhCHHHHHHHHhcCCCeEEEecCCHHHHHHHHHHHHhCCCCeEEEEcCCCC
Q 030232           73 VVRNDLKMGKGKIAAQCSHATLGLYKKVLYRAPKALNRWEMCAQPKVVLKIESEEDMLVLQERAKSLKLPTHITIDAGRT  152 (181)
Q Consensus        73 vVR~DL~Ms~GKiAAQ~aHAal~~~~~~~~~~~~~l~~W~~~G~~KVvLk~~seeel~~L~~~A~~~gl~~~~i~DAG~T  152 (181)
                      |||+||+|++||||||||||++++|+++++++|+.+++|+++||+|||||++|+++|.+|++.|++.|+++++|+|||||
T Consensus        81 VVR~DLkMgkGKIAAQc~HAalg~Y~~l~~~~p~ll~~We~~GQ~KIvvk~~~e~~l~~l~~~A~~~gl~t~~i~DAGrT  160 (190)
T KOG3282|consen   81 VVRNDLKMGKGKIAAQCAHAALGVYKHLMQRDPELLRRWENCGQAKIVVKAESEEELMELQKDAKKLGLYTHLIQDAGRT  160 (190)
T ss_pred             EEeccCCCccchhHHHHHHHHHHHHHHHHHhCHHHHHHHHHcCCceEEEEcCCHHHHHHHHHHHHHcCCcEEEEEcCCcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCeeEEEe-cCCccchhhhcCCCCCC
Q 030232          153 QIAPNSRTVMAI-LGPVEVVDDVTGGLKLL  181 (181)
Q Consensus       153 ei~pgs~TvlAi-pgP~~~id~iTg~LKLl  181 (181)
                      ||+|||.||++| |||.+.+|.||||||||
T Consensus       161 QIa~gS~TVl~Igpg~~~~id~VTG~LKL~  190 (190)
T KOG3282|consen  161 QIAPGSRTVLGIGPGPVEVIDSVTGHLKLY  190 (190)
T ss_pred             ccCCCCeEEEEEcCccHHHHhhcCcceeeC
Confidence            999999999999 99999999999999997

>TIGR00283 arch_pth2 peptidyl-tRNA hydrolase

Probab=100.00  E-value=7.3e-48  Score=296.41  Aligned_cols=114  Identities=46%  Similarity=0.624  Sum_probs=111.4

Q ss_pred             eEEEEEEeCCCCCCcchhhhHhhHHHHHHHHHHHhhCHHHHHHHHhcCCCeEEEecCCHHHHHHHHHHHHhCCCCeEEEE
Q 030232           68 FKMVLVVRNDLKMGKGKIAAQCSHATLGLYKKVLYRAPKALNRWEMCAQPKVVLKIESEEDMLVLQERAKSLKLPTHITI  147 (181)
Q Consensus        68 ~kmvlvVR~DL~Ms~GKiAAQ~aHAal~~~~~~~~~~~~~l~~W~~~G~~KVvLk~~seeel~~L~~~A~~~gl~~~~i~  147 (181)
                      +||||+||+||+||+||+||||||||+++|+++.+.+|+++++|++.||+||+|+++|+++|++|.++|++.|+++++|+
T Consensus         1 ~k~vlvVr~DL~M~~GKiaAQ~~HAa~~~~~~~~~~~~~~~~~W~~~G~~KVvlk~~~~~el~~l~~~a~~~~l~~~~v~   80 (115)
T TIGR00283         1 MKMVIVIRDDLGMGKGKIAAQVCHAAIIGFLKSKRKNPSLRRKWLDEGQKKVVLKVNSLEELLEIYHKAESLGLVTGLIR   80 (115)
T ss_pred             CeEEEEEeCCCCCChhHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCEEEEE
Confidence            59999999999999999999999999999998888889999999999999999999999999999999999999999999


Q ss_pred             cCCCCccCCCCeeEEEe-cCCccchhhhcCCCCCC
Q 030232          148 DAGRTQIAPNSRTVMAI-LGPVEVVDDVTGGLKLL  181 (181)
Q Consensus       148 DAG~Tei~pgs~TvlAi-pgP~~~id~iTg~LKLl  181 (181)
                      |||||||||||.||+|| |+|++.||+||||||||
T Consensus        81 DAG~Tei~pgs~TvlaigP~~~~~id~itg~LkLl  115 (115)
T TIGR00283        81 DAGHTQIPPGTITAVGIGPDEDEKIDKITGDLKLL  115 (115)
T ss_pred             cCCcceeCCCCcEEEEECCCCHHHHHHHhCCCccC
Confidence            99999999999999999 99999999999999997

This model describes an archaeal/eukaryotic form of peptidyl-tRNA hydrolase. Most bacterial forms are described by TIGR00447.

>cd02430 PTH2 Peptidyl-tRNA hydrolase, type 2 (PTH2)

Probab=100.00  E-value=3.2e-47  Score=292.81  Aligned_cols=114  Identities=62%  Similarity=0.939  Sum_probs=111.7

Q ss_pred             eEEEEEEeCCCCCCcchhhhHhhHHHHHHHHHHHhhCHHHHHHHHhcCCCeEEEecCCHHHHHHHHHHHHhCCCCeEEEE
Q 030232           68 FKMVLVVRNDLKMGKGKIAAQCSHATLGLYKKVLYRAPKALNRWEMCAQPKVVLKIESEEDMLVLQERAKSLKLPTHITI  147 (181)
Q Consensus        68 ~kmvlvVR~DL~Ms~GKiAAQ~aHAal~~~~~~~~~~~~~l~~W~~~G~~KVvLk~~seeel~~L~~~A~~~gl~~~~i~  147 (181)
                      +||||+||+||+||+||+||||||||+++|.++.+.+|+++++|++.||+||||+++|+++|++|.++|++.|+++++|+
T Consensus         1 ~K~vivVr~DL~m~~GKiaAQ~~HAa~~~~~~~~~~~~~~~~~W~~~G~~KiVl~~~~~~el~~l~~~a~~~~l~~~~v~   80 (115)
T cd02430           1 YKMVLVVRNDLKMGKGKIAAQCAHAALGAYKKAMKSNPELLRAWEREGQKKIVLKVNSEEELLELKKKAKSLGLPTSLIQ   80 (115)
T ss_pred             CEEEEEEeCCCCCCcchHHHHHHHHHHHHHHHHHhcCHHHHHHHHhcCCcEEEEecCCHHHHHHHHHHHHHcCCCeEEEE
Confidence            69999999999999999999999999999998888899999999999999999999999999999999999999999999


Q ss_pred             cCCCCccCCCCeeEEEe-cCCccchhhhcCCCCCC
Q 030232          148 DAGRTQIAPNSRTVMAI-LGPVEVVDDVTGGLKLL  181 (181)
Q Consensus       148 DAG~Tei~pgs~TvlAi-pgP~~~id~iTg~LKLl  181 (181)
                      |||||||||||.||+|+ |+|++.||+||||||||
T Consensus        81 DAG~Tev~~gt~T~laigP~~~~~i~~itg~LkL~  115 (115)
T cd02430          81 DAGRTQIAPGTITVLGIGPAPEELIDKVTGHLKLL  115 (115)
T ss_pred             eCCCcccCCCCceEEEeCCCCHHHHHHhhCCCcCC
Confidence            99999999999999999 99999999999999997

Peptidyl-tRNA hydrolase (PTH) activity releases tRNA from the premature translation termination product peptidyl-tRNA, therefore allowing the tRNA and peptide to be reused in protein synthesis. PTH2 is present in archaea and eukaryotes.

>PF01981 PTH2: Peptidyl-tRNA hydrolase PTH2; InterPro: IPR002833 Peptidyl-tRNA hydrolases are enzymes that release tRNAs from peptidyl-tRNA during translation

Probab=100.00  E-value=3.4e-47  Score=291.00  Aligned_cols=115  Identities=53%  Similarity=0.797  Sum_probs=109.9

Q ss_pred             CeEEEEEEeCCCCCCcchhhhHhhHHHHHHHHHHHhhCHHHHHHHHhcCCCeEEEecCCHHHHHHHHHHHHhCCCCeEEE
Q 030232           67 DFKMVLVVRNDLKMGKGKIAAQCSHATLGLYKKVLYRAPKALNRWEMCAQPKVVLKIESEEDMLVLQERAKSLKLPTHIT  146 (181)
Q Consensus        67 ~~kmvlvVR~DL~Ms~GKiAAQ~aHAal~~~~~~~~~~~~~l~~W~~~G~~KVvLk~~seeel~~L~~~A~~~gl~~~~i  146 (181)
                      |+|||||||+||+||+||+|||||||++++|+++.+++++++.+|+++||+||||+++|+++|++|.++|++.||++++|
T Consensus         1 ~~k~vivVr~DL~m~~GKiaAQ~~HAa~~~~~~~~~~~~~~~~~W~~~g~~Kivlkv~~e~~L~~l~~~a~~~gl~~~~i   80 (116)
T PF01981_consen    1 ELKMVIVVRKDLKMSKGKIAAQCAHAAVAAYAKLHEDDPEWLREWENNGQKKIVLKVPSEEELLELAKKAKEAGLPHYLI   80 (116)
T ss_dssp             SEEEEEEEESSSSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTT-SEEEE
T ss_pred             CeEEEEEEECCCCCCcchHHHHHHHHHHHHHHHhhhcCHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHHCCCCEEEE
Confidence            68999999999999999999999999999999988888999999999999999999999999999999999999999999


Q ss_pred             EcCCCCccCCCCeeEEEe-cCCccchhhhcCCCCCC
Q 030232          147 IDAGRTQIAPNSRTVMAI-LGPVEVVDDVTGGLKLL  181 (181)
Q Consensus       147 ~DAG~Tei~pgs~TvlAi-pgP~~~id~iTg~LKLl  181 (181)
                      +|||||||||||.||||| |+|++.||+||||||||
T Consensus        81 ~Dag~Tei~pgs~TvlaigP~~~~~i~~it~~LkL~  116 (116)
T PF01981_consen   81 RDAGRTEIPPGSVTVLAIGPAPKEEIDKITGHLKLL  116 (116)
T ss_dssp             EETSSSSSSTTCEEEEEEEEEEHHHHHHHHTTSEB-
T ss_pred             EECCCCcCCCCCeEEEEECcCCHHHHHHHhCcCcCC
Confidence            999999999999999999 99999999999999997

; GO: 0004045 aminoacyl-tRNA hydrolase activity; PDB: 1RLK_A 1XTY_C 2ZV3_I 2D3K_A 1WN2_A 1Q7S_A 3ERJ_B 1RZW_A.

>PRK04322 peptidyl-tRNA hydrolase; Provisional

Probab=100.00  E-value=6e-47  Score=290.49  Aligned_cols=112  Identities=49%  Similarity=0.712  Sum_probs=109.7

Q ss_pred             EEEEEeCCCCCCcchhhhHhhHHHHHHHHHHHhhCHHHHHHHHhcCCCeEEEecCCHHHHHHHHHHHHhCCCCeEEEEcC
Q 030232           70 MVLVVRNDLKMGKGKIAAQCSHATLGLYKKVLYRAPKALNRWEMCAQPKVVLKIESEEDMLVLQERAKSLKLPTHITIDA  149 (181)
Q Consensus        70 mvlvVR~DL~Ms~GKiAAQ~aHAal~~~~~~~~~~~~~l~~W~~~G~~KVvLk~~seeel~~L~~~A~~~gl~~~~i~DA  149 (181)
                      |||+||+||+||+||+||||||||+++|+++.+++|+++++|++.||+||||+++|+++|++|.++|++.||++++|+||
T Consensus         1 ~vivVr~DL~M~~GKiaAQ~~HAa~~~~~~~~~~~~~~~~~W~~~G~~Kvvlkv~~~~el~~l~~~a~~~~l~~~~v~DA   80 (113)
T PRK04322          1 QVIVVRTDLKMGKGKLAAQVAHAAVSAYEKADKSNREWLEEWLNEGQKKVVLKVNSEEELLELKEKAERLGLPTALIRDA   80 (113)
T ss_pred             CEEEEeCCCCCCcchHHHHHHHHHHHHHHHHHhcCHHHHHHHHHCCCcEEEEeCCCHHHHHHHHHHHHHcCCCEEEEEeC
Confidence            79999999999999999999999999999888888999999999999999999999999999999999999999999999


Q ss_pred             CCCccCCCCeeEEEe-cCCccchhhhcCCCCCC
Q 030232          150 GRTQIAPNSRTVMAI-LGPVEVVDDVTGGLKLL  181 (181)
Q Consensus       150 G~Tei~pgs~TvlAi-pgP~~~id~iTg~LKLl  181 (181)
                      |||||||||.||||| |+|++.||+||||||||
T Consensus        81 G~Tei~~gs~TvlaigP~~~~~i~~itg~LkLl  113 (113)
T PRK04322         81 GLTQLPPGTVTALGIGPAPEEKIDKITGDLKLL  113 (113)
T ss_pred             CCcccCCCCcEEEEeCCCCHHHHHHhhCCCcCC
Confidence            999999999999999 99999999999999997

>cd02407 PTH2_family Peptidyl-tRNA hydrolase, type 2 (PTH2)_like

Probab=100.00  E-value=1.9e-46  Score=288.37  Aligned_cols=114  Identities=61%  Similarity=0.902  Sum_probs=111.5

Q ss_pred             eEEEEEEeCCCCCCcchhhhHhhHHHHHHHHHHHhhCHHHHHHHHhcCCCeEEEecCCHHHHHHHHHHHHhCCCCeEEEE
Q 030232           68 FKMVLVVRNDLKMGKGKIAAQCSHATLGLYKKVLYRAPKALNRWEMCAQPKVVLKIESEEDMLVLQERAKSLKLPTHITI  147 (181)
Q Consensus        68 ~kmvlvVR~DL~Ms~GKiAAQ~aHAal~~~~~~~~~~~~~l~~W~~~G~~KVvLk~~seeel~~L~~~A~~~gl~~~~i~  147 (181)
                      +||||+||+||+||+||+||||||||+++|+++.+.+++++++|+.+||+||||+++|+++|++|.++|++.||++++|+
T Consensus         1 ~k~vivVr~dl~m~~GKiaAQ~~HAa~~~~~~~~~~~~~~~~~W~~~g~~KvVl~v~~~~~l~~l~~~a~~~gl~~~~v~   80 (115)
T cd02407           1 YKMVIVVRNDLKMGKGKIAAQCAHAALAAYKKAMKDPPTLLRAWELEGQKKVVLKVPSEEELLELAKKAKELGLPHSLIQ   80 (115)
T ss_pred             CEEEEEEECCCCCChhhHHHHHHHHHHHHHHHHHhCCHHHHHHHHhCCCcEEEEECCCHHHHHHHHHHHHHcCCCeEEEE
Confidence            69999999999999999999999999999999888888999999999999999999999999999999999999999999


Q ss_pred             cCCCCccCCCCeeEEEe-cCCccchhhhcCCCCCC
Q 030232          148 DAGRTQIAPNSRTVMAI-LGPVEVVDDVTGGLKLL  181 (181)
Q Consensus       148 DAG~Tei~pgs~TvlAi-pgP~~~id~iTg~LKLl  181 (181)
                      |||||||||||.||+|| |+|++.||+||||||||
T Consensus        81 DAG~Tqi~~gt~TvlaigP~~~~~i~~itg~LkL~  115 (115)
T cd02407          81 DAGRTQIPPGTPTVLAIGPAPKEKVDKVTGHLKLL  115 (115)
T ss_pred             ECCCcccCCCCceEEEECCCCHHHHHHHcCcCcCC
Confidence            99999999999999999 99999999999999997

Peptidyl-tRNA hydrolase activity releases tRNA from the premature translation termination product peptidyl-tRNA. Two structurally different enzymes have been reported to encode such activity, Pth present in bacteria and eukaryotes and Pth2 present in archaea and eukaryotes.

>COG1990 pth2 Peptidyl-tRNA hydrolase [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1.7e-42  Score=267.50  Aligned_cols=117  Identities=48%  Similarity=0.713  Sum_probs=112.2

Q ss_pred             CCCeEEEEEEeCCCCCCcchhhhHhhHHHHHHHHHHHhhC--HHHHHHHHhcCCCeEEEecCCHHHHHHHHHHHHhCCCC
Q 030232           65 LDDFKMVLVVRNDLKMGKGKIAAQCSHATLGLYKKVLYRA--PKALNRWEMCAQPKVVLKIESEEDMLVLQERAKSLKLP  142 (181)
Q Consensus        65 ~~~~kmvlvVR~DL~Ms~GKiAAQ~aHAal~~~~~~~~~~--~~~l~~W~~~G~~KVvLk~~seeel~~L~~~A~~~gl~  142 (181)
                      ..++||+|+||.||+|++||+|||||||++.||.++.+.+  ++++++|++.||+||||||+|+++|.++.++|++.|+|
T Consensus         3 ~~~~k~vIvVr~Dl~m~kGKiaaQvaHaa~~~~~~~~~~~~~~~~~~eWl~~Gq~Kivlkv~~~~eL~~~~~~A~~~gl~   82 (122)
T COG1990           3 RGQYKMVIVVRDDLKMSKGKLAAQVAHAAVDAAKLAIKSTELDEWLDEWLREGQKKIVLKVGSLDELLELHQKAESLGLP   82 (122)
T ss_pred             cccceeEEEEecccccccchHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHHHHHcCCh
Confidence            3579999999999999999999999999999999987765  57999999999999999999999999999999999999


Q ss_pred             eEEEEcCCCCccCCCCeeEEEe-cCCccchhhhcCCCCCC
Q 030232          143 THITIDAGRTQIAPNSRTVMAI-LGPVEVVDDVTGGLKLL  181 (181)
Q Consensus       143 ~~~i~DAG~Tei~pgs~TvlAi-pgP~~~id~iTg~LKLl  181 (181)
                      +.+|+|||+|||||||.||++| |+|.+.+|+|||+||||
T Consensus        83 ~~~i~DaG~TqippGt~T~L~iGP~~~~~iD~iTG~lkL~  122 (122)
T COG1990          83 TALIRDAGRTQIPPGTITVLGIGPAPEEVIDKITGDLKLL  122 (122)
T ss_pred             HHHHHhcCccccCCCCeEEEEECCCchhhhcccccccccC
Confidence            9999999999999999999999 99999999999999997

>cd02429 PTH2_like Peptidyl-tRNA hydrolase, type 2 (PTH2)_like

Probab=100.00  E-value=3.7e-39  Score=248.54  Aligned_cols=108  Identities=23%  Similarity=0.285  Sum_probs=100.2

Q ss_pred             eEEEEEEeCCC----CCCcchhhhHhhHHHHHHHHHHHhhCHHHHHHH---HhcCCCeEEEecCCHHHHHHHHHHHHhCC
Q 030232           68 FKMVLVVRNDL----KMGKGKIAAQCSHATLGLYKKVLYRAPKALNRW---EMCAQPKVVLKIESEEDMLVLQERAKSLK  140 (181)
Q Consensus        68 ~kmvlvVR~DL----~Ms~GKiAAQ~aHAal~~~~~~~~~~~~~l~~W---~~~G~~KVvLk~~seeel~~L~~~A~~~g  140 (181)
                      +.||||||+||    +||+||+||||||||+++|+. .+++|+++++|   ..+||+||||+++|++||.+|.++|++.|
T Consensus         1 ~vq~ivVR~DL~~~~~m~kGkiaAQ~aHAav~a~~~-~~~~~~~~~~~~~~~~~g~~KVVLkv~~e~eL~~L~~~a~~~g   79 (116)
T cd02429           1 LVQYVILRRDLQTKLSWPLGAVIAQACHAAVAVIHL-FRSDPDTKKYAYLSNLDNMHKVVLEVPDEAALKNLSSKLTENS   79 (116)
T ss_pred             CEEEEEEeccccccCCCCccHHHHHHHHHHHHHHHH-HhhCchHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHcC
Confidence            47999999999    999999999999999999875 46688886667   33899999999999999999999999999


Q ss_pred             CCeEEEEcCCCCccCCCCeeEEEe-cCCccchhhhcCCCCCC
Q 030232          141 LPTHITIDAGRTQIAPNSRTVMAI-LGPVEVVDDVTGGLKLL  181 (181)
Q Consensus       141 l~~~~i~DAG~Tei~pgs~TvlAi-pgP~~~id~iTg~LKLl  181 (181)
                      |++++|     ||+||||.||+|| |+|.+.||++|||||||
T Consensus        80 i~~~l~-----te~p~gt~T~LaigP~~~~~id~it~~LkLl  116 (116)
T cd02429          80 IKHKLW-----IEQPENIPTCIALKPYPKETVASYLKKLKLL  116 (116)
T ss_pred             CCeEEE-----EEcCCCCceEEEeCCCCHHHHHHHhCCCcCC
Confidence            999996     8999999999999 99999999999999997

Peptidyl-tRNA hydrolase activity releases tRNA from the premature translation termination product peptidyl-tRNA. Two structurally different enzymes have been reported to encode such activity, Pth present in bacteria and eukaryotes and Pth2 present in archaea and eukaryotes. There is no functional information for this eukaryote-specific subgroup.

>KOG3305 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.79  E-value=5.9e-20  Score=138.23  Aligned_cols=110  Identities=25%  Similarity=0.294  Sum_probs=99.2

Q ss_pred             CCeEEEEEEeCCC----CCCcchhhhHhhHHHHHHHHHHHhhCHHHHHHHH---hcCCCeEEEecCCHHHHHHHHHHHHh
Q 030232           66 DDFKMVLVVRNDL----KMGKGKIAAQCSHATLGLYKKVLYRAPKALNRWE---MCAQPKVVLKIESEEDMLVLQERAKS  138 (181)
Q Consensus        66 ~~~kmvlvVR~DL----~Ms~GKiAAQ~aHAal~~~~~~~~~~~~~l~~W~---~~G~~KVvLk~~seeel~~L~~~A~~  138 (181)
                      +.+.||||+|+||    .|+.|.+++|.|||+.++.+. ++.+++.+.+-.   .++|+||+|++++|..|..|.++.+.
T Consensus         2 ~~ivqyivlr~dl~~alswplgaviaq~chas~a~i~~-~~dd~~tl~y~dpq~id~mhkv~le~k~es~lm~lseklk~   80 (121)
T KOG3305|consen    2 DNIVQYIVLRRDLIDALSWPLGAVIAQGCHASAAAIHL-FKDDADTLAYCDPQDIDNMHKVTLEAKDESALMKLSEKLKE   80 (121)
T ss_pred             CcceeEeeehHhhhhhccCchhHHHHhhhhHHHHHHHh-ccCCcchhhcCChhhhhhhhheeeeecChHHHHhHHHHHhc
Confidence            5688999999997    799999999999999998885 455666666552   47899999999999999999999999


Q ss_pred             CCCCeEEEEcCCCCccCCCCeeEEEe-cCCccchhhhcCCCCCC
Q 030232          139 LKLPTHITIDAGRTQIAPNSRTVMAI-LGPVEVVDDVTGGLKLL  181 (181)
Q Consensus       139 ~gl~~~~i~DAG~Tei~pgs~TvlAi-pgP~~~id~iTg~LKLl  181 (181)
                      .+|.+.+|.     |+|+|..||||. |+|++.+.++.+||||+
T Consensus        81 ~~i~hklwi-----eqpeniptcia~kpy~k~~v~~f~k~lkl~  119 (121)
T KOG3305|consen   81 GEIKHKLWI-----EQPENIPTCIALKPYPKDQVHKFFKHLKLC  119 (121)
T ss_pred             CCchhhhhh-----cCccCCCceeecCCCcHHHHHHHHHHHHhh
Confidence            999999997     799999999999 99999999999999984

>PF09391 DUF2000: Protein of unknown function (DUF2000); InterPro: IPR018988 This is a family of proteins of unknown function

Probab=98.32  E-value=1.5e-06  Score=68.70  Aligned_cols=108  Identities=29%  Similarity=0.391  Sum_probs=73.9

Q ss_pred             CeEEEEEEeCCCCCCcchhhhHhhHHHHHHHHHHHhhCHHHH---------HHH-HhcCCCeEEEecCCHHHHHHHHHHH
Q 030232           67 DFKMVLVVRNDLKMGKGKIAAQCSHATLGLYKKVLYRAPKAL---------NRW-EMCAQPKVVLKIESEEDMLVLQERA  136 (181)
Q Consensus        67 ~~kmvlvVR~DL~Ms~GKiAAQ~aHAal~~~~~~~~~~~~~l---------~~W-~~~G~~KVvLk~~seeel~~L~~~A  136 (181)
                      +.|.|+|||.||.  .|.++-=++|-++++-+..    |+.+         ..| -...++-+||+. |.++|.++.++|
T Consensus         1 d~K~viVv~~~Lp--~g~~~NaaA~L~~~Lg~~~----p~l~G~~~~D~~g~~h~gi~~~PipIL~a-~~~~L~~l~~~a   73 (133)
T PF09391_consen    1 DTKCVIVVDEDLP--PGLAANAAAVLGLGLGAAH----PELVGEDYRDADGNAHPGISHIPIPILKA-NSEQLRELRQKA   73 (133)
T ss_dssp             SEEEEEEEETTS---HHHHHHHHHHHHHHHHHH-----GGGB-S-EE-TTS-EE---BSS-EEEEEE--HHHHHHHHHHH
T ss_pred             CcEEEEEECCCCh--HHHHHHHHHHHHHHHhccC----ccccCCcccCCCCCCCCCCCCcCeEEEEc-CHHHHHHHHHHH
Confidence            4699999999987  6888888899988877642    2211         111 124688999999 789999999999


Q ss_pred             HhCCCCeEEEEcCCC------------CccCCCCeeEEEe--cCCccchhhhcCCCCCC
Q 030232          137 KSLKLPTHITIDAGR------------TQIAPNSRTVMAI--LGPVEVVDDVTGGLKLL  181 (181)
Q Consensus       137 ~~~gl~~~~i~DAG~------------Tei~pgs~TvlAi--pgP~~~id~iTg~LKLl  181 (181)
                      .+.++.+....+..+            -+.++.....+||  -||+..||++||+|+||
T Consensus        74 ~~~~i~~~~F~~~aq~~~~y~e~~~~~~~~~~~~l~y~Gi~L~G~kk~V~kltg~l~L~  132 (133)
T PF09391_consen   74 LEREITVVDFTDEAQSTGHYEEYRAAVAATPEEDLEYVGIALFGPKKAVDKLTGSLPLL  132 (133)
T ss_dssp             HHTT---EEEEGGGGG---HHHHHHHHTT--TTT--EEEEEEEEEHHHHHHHCTT-EE-
T ss_pred             HHCCCeEEeChHHHhhCCCHHHHHHHHhcCChhhccEEEEEEECCHHHHHHHhcCCCCC
Confidence            999998777766553            3455677777777  69999999999999986

The structure of one of the proteins in this family has been shown to adopt an alpha beta fold. ; PDB: 2GAX_A.

>COG4954 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.42  E-value=0.15  Score=39.69  Aligned_cols=66  Identities=32%  Similarity=0.506  Sum_probs=52.4

Q ss_pred             cCCCeEEEecCCHHHHHHHHHHHHhCCCCeEEEE--------cCC----CCccCCCCeeEEEe-c-CCccchhhhcCCCC
Q 030232          114 CAQPKVVLKIESEEDMLVLQERAKSLKLPTHITI--------DAG----RTQIAPNSRTVMAI-L-GPVEVVDDVTGGLK  179 (181)
Q Consensus       114 ~G~~KVvLk~~seeel~~L~~~A~~~gl~~~~i~--------DAG----~Tei~pgs~TvlAi-p-gP~~~id~iTg~LK  179 (181)
                      +=|+-|||.. |++.|..+-..+-++++++.+.+        ||-    +.|..|.+.-|++| . ..+..+|+||++-|
T Consensus        54 siqpvivls~-dqetl~aihrraler~vttslyieemfstghdaanravfa~f~pd~akvvgialraekkivdkitkgar  132 (135)
T COG4954          54 SIQPVIVLSG-DQETLKAIHRRALERKVTTSLYIEEMFSTGHDAANRAVFAEFGPDSAKVVGIALRAEKKIVDKITKGAR  132 (135)
T ss_pred             ccceEEEEeC-CHHHHHHHHHHHHhcCCCcceeHHHHHhccchHHHHHHHHhhCCCcceeeeeehhhhhHHHHHHccccc
Confidence            3477777766 89999999999999999988763        443    36788999999999 3 34578999999876


Q ss_pred             C
Q 030232          180 L  180 (181)
Q Consensus       180 L  180 (181)
                      +
T Consensus       133 m  133 (135)
T COG4954         133 M  133 (135)
T ss_pred             c
Confidence            5

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	181
1q7s_A	117	Crystal Structure Of Bit1 Length = 117		1e-31
1xty_A	120	Crystal Structure Of Sulfolobus Solfataricus Peptid		6e-20
2zv3_A	115	Crystal Structure Of Project Mj0051 From Methanocal		8e-20
1rzw_A	123	The Solution Structure Of The Archaeglobus Fulgidis		2e-14
1rlk_A	117	Structure Of Conserved Protein Of Unknown Function		3e-13
1wn2_A	121	Crystal Structure Of Project Id Ph1539 From Pyrococ		2e-12

>pdb|1Q7S|A Chain A, Crystal Structure Of Bit1 Length = 117

Iteration: 1
 Score =  132 bits (332), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 65/115 (56%), Positives = 83/115 (72%), Gaps = 1/115 (0%)
Query: 67  DFKMVLVVRNDLKMGKGKIAAQCSHATLGLYKKVLYRAPKALNRWEMCAQPKVVLKIESE 126
           ++KM+LVVRNDLKMGKGK+AAQCSHA +  YK++  R P+ L +WE C QPKVV+K   E
Sbjct: 2   EYKMILVVRNDLKMGKGKVAAQCSHAAVSAYKQIQRRNPEMLKQWEYCGQPKVVVKAPDE 61
Query: 127 EDMLVLQERAKSLKLPTHITIDAGRTQIAPNSRTVMAI-LGPVEVVDDVTGGLKL 180
           E ++ L   AK L L   +  DAGRTQIAP S+TV+ I  GP +++D VTG LKL
Sbjct: 62  ETLIALLAHAKMLGLTVSLIQDAGRTQIAPGSQTVLGIGPGPADLIDKVTGHLKL 116

>pdb|1XTY|A Chain A, Crystal Structure Of Sulfolobus Solfataricus Peptidyl-Trna Hydrolase Length = 120

Iteration: 1
 Score = 93.6 bits (231), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 50/119 (42%), Positives = 77/119 (64%), Gaps = 5/119 (4%)
Query: 68  FKMVLVVRNDLKMGKGKIAAQCSHATLGLYKKVL----YRAPKALNRWEMCAQPKVVLKI 123
            KMV+VVR+D+KMGKGKIAAQ +HA + L   ++     R  + LN W    QPK+++K+
Sbjct: 2   IKMVIVVRSDIKMGKGKIAAQVAHAAVTLVVSIINSNNLRWKEWLNEWLHQGQPKIIVKV 61
Query: 124 ESEEDMLVLQERAKSLKLPTHITIDAGRTQIAPNSRTVMAI-LGPVEVVDDVTGGLKLL 181
            S ++++   ++A+++ LP  I  DAG+TQ+ P + T + I   P  +VD +TG LKLL
Sbjct: 62  NSLDEIISRAKKAETMNLPFSIIEDAGKTQLEPGTITCLGIGPAPENLVDSITGDLKLL 120

>pdb|2ZV3|A Chain A, Crystal Structure Of Project Mj0051 From Methanocaldococcus Jannaschii Dsm 2661 Length = 115

Iteration: 1
 Score = 93.2 bits (230), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 51/116 (43%), Positives = 74/116 (63%), Gaps = 3/116 (2%)
Query: 68  FKMVLVVRNDLKMGKGKIAAQCSHATLGLYKKVLYRAPKALNRWEMCAQPKVVLKIESEE 127
            KMV+V+RNDL MGKGK+ AQ  HA +  +     + P+A++ W    Q KVV+K+ SE+
Sbjct: 1   MKMVVVIRNDLGMGKGKMVAQGGHAIIEAFLDAKRKNPRAVDEWLREGQKKVVVKVNSEK 60
Query: 128 DMLVLQERAKSLKLPTHITIDAGRTQIAPNSRTVMAILGPV--EVVDDVTGGLKLL 181
           +++ +  +A+S  LP  I  DAG TQ+ P + T +AI GP   E +D +TG LKLL
Sbjct: 61  ELIDIYNKARSEGLPCSIIRDAGHTQLEPGTLTAVAI-GPEKDEKIDKITGHLKLL 115

>pdb|1RZW|A Chain A, The Solution Structure Of The Archaeglobus Fulgidis Protein Af2095. Northeast Structural Genomics Consortium Target Gr4 Length = 123

Iteration: 1
 Score = 75.1 bits (183), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 49/117 (41%), Positives = 73/117 (62%), Gaps = 8/117 (6%)
Query: 68  FKMVLVVRNDLKMGKGKIAAQCSHATLGLYKKVLYRAPKALNR-WEMCAQPKVVLKIESE 126
            K V+VVR+DLK+ +GK+A Q +HA +  Y     ++  +L R W    Q KVVLK++S 
Sbjct: 3   LKQVIVVRDDLKLSRGKLAVQVAHAAIIGY----LKSDSSLRRKWLDEGQKKVVLKVKSL 58
Query: 127 EDMLVLQERAKSLKLPTHITIDAGRTQIAPNSRTVMAILGPVEV--VDDVTGGLKLL 181
           E++L ++ +A+SL L T +  DAG T++ P + T + I GP E   +D VTG L LL
Sbjct: 59  EELLGIKHKAESLGLVTGLVQDAGLTEVPPGTITAVVI-GPDEERKIDKVTGNLPLL 114

>pdb|1RLK|A Chain A, Structure Of Conserved Protein Of Unknown Function Ta0108 From Thermoplasma Acidophilum Length = 117

Iteration: 1
 Score = 71.2 bits (173), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 43/115 (37%), Positives = 64/115 (55%), Gaps = 3/115 (2%)
Query: 69  KMVLVVRNDLKMGKGKIAAQCSHATLGLYKKVLYRAPKALNRWEMCAQPKVVLKIESEED 128
           KMV+ VR DL MGKGKIAAQ +HA +    + +       N W    Q K+V+K+   ++
Sbjct: 4   KMVIAVRKDLDMGKGKIAAQVAHAAVTCAIRSMKINRDVFNEWYDEGQRKIVVKVNDLDE 63
Query: 129 MLVLQERAKSLKLPTHITIDAGRTQIAPNSRTVMAILGP--VEVVDDVTGGLKLL 181
           ++ ++  A S+ +   I  D G TQ+ P + T +  LGP   E +D +TG  KLL
Sbjct: 64  IMEIKRMADSMGIVNEIVQDRGYTQVEPGTITCIG-LGPDEEEKLDKITGKYKLL 117

>pdb|1WN2|A Chain A, Crystal Structure Of Project Id Ph1539 From Pyrococcus Horikoshii Ot3 Length = 121

Iteration: 1
 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/115 (42%), Positives = 70/115 (60%), Gaps = 1/115 (0%)
Query: 68  FKMVLVVRNDLKMGKGKIAAQCSHATLGLYKKVLYRAPKALNRWEMCAQPKVVLKIESEE 127
           +K V+V R DLK+ KGK+AAQ +H  +    +   +  +    W    Q KVV+K+ESEE
Sbjct: 7   YKQVIVARADLKLSKGKLAAQVAHGAVTAAFEAYKKKREWFEAWFREGQKKVVVKVESEE 66
Query: 128 DMLVLQERAKSLKLPTHITIDAGRTQIAPNSRTVMAI-LGPVEVVDDVTGGLKLL 181
           ++  L+  A+ L LP  +  DAG T+I P + TV+A+   P E+VD VTG LKLL
Sbjct: 67  ELFKLKAEAEKLGLPNALIRDAGLTEIPPGTVTVLAVGPAPEEIVDKVTGNLKLL 121

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	181
1q7s_A	117	BIT1, protein CGI-147; apoptosis; 2.00A {Homo sapi	3e-48
2zv3_A	115	PTH, peptidyl-tRNA hydrolase; cytoplasm, structura	6e-47
1wn2_A	121	Peptidyl-tRNA hydrolase; riken structural genomics	8e-47
1rlk_A	117	Hypothetical protein TA0108; structural genomics,	4e-46
1rzw_A	123	Protein AF2095(GR4); beta-sheet of 4 parallel, ant	2e-45
1xty_A	120	PTH, peptidyl-tRNA hydrolase; mixed beta sheet; 1.	1e-44

>1q7s_A BIT1, protein CGI-147; apoptosis; 2.00A {Homo sapiens} SCOP: c.131.1.1 Length = 117

 Score =  151 bits (384), Expect = 3e-48
 Identities = 65/115 (56%), Positives = 83/115 (72%), Gaps = 1/115 (0%)

Query: 67  DFKMVLVVRNDLKMGKGKIAAQCSHATLGLYKKVLYRAPKALNRWEMCAQPKVVLKIESE 126
           ++KM+LVVRNDLKMGKGK+AAQCSHA +  YK++  R P+ L +WE C QPKVV+K   E
Sbjct: 2   EYKMILVVRNDLKMGKGKVAAQCSHAAVSAYKQIQRRNPEMLKQWEYCGQPKVVVKAPDE 61

Query: 127 EDMLVLQERAKSLKLPTHITIDAGRTQIAPNSRTVMAI-LGPVEVVDDVTGGLKL 180
           E ++ L   AK L L   +  DAGRTQIAP S+TV+ I  GP +++D VTG LKL
Sbjct: 62  ETLIALLAHAKMLGLTVSLIQDAGRTQIAPGSQTVLGIGPGPADLIDKVTGHLKL 116

>2zv3_A PTH, peptidyl-tRNA hydrolase; cytoplasm, structural genomics, NPPSFA; 2.10A {Methanocaldococcus jannaschii} Length = 115

 Score =  148 bits (375), Expect = 6e-47
 Identities = 49/114 (42%), Positives = 72/114 (63%), Gaps = 1/114 (0%)

Query: 69  KMVLVVRNDLKMGKGKIAAQCSHATLGLYKKVLYRAPKALNRWEMCAQPKVVLKIESEED 128
           KMV+V+RNDL MGKGK+ AQ  HA +  +     + P+A++ W    Q KVV+K+ SE++
Sbjct: 2   KMVVVIRNDLGMGKGKMVAQGGHAIIEAFLDAKRKNPRAVDEWLREGQKKVVVKVNSEKE 61

Query: 129 MLVLQERAKSLKLPTHITIDAGRTQIAPNSRTVMAIL-GPVEVVDDVTGGLKLL 181
           ++ +  +A+S  LP  I  DAG TQ+ P + T +AI     E +D +TG LKLL
Sbjct: 62  LIDIYNKARSEGLPCSIIRDAGHTQLEPGTLTAVAIGPEKDEKIDKITGHLKLL 115

>1wn2_A Peptidyl-tRNA hydrolase; riken structural genomics/proteomics initiative, structural genomics; 1.20A {Pyrococcus horikoshii} PDB: 2d3k_A Length = 121

 Score =  148 bits (375), Expect = 8e-47
 Identities = 49/117 (41%), Positives = 70/117 (59%), Gaps = 1/117 (0%)

Query: 66  DDFKMVLVVRNDLKMGKGKIAAQCSHATLGLYKKVLYRAPKALNRWEMCAQPKVVLKIES 125
             +K V+V R DLK+ KGK+AAQ +H  +    +   +  +    W    Q KVV+K+ES
Sbjct: 5   FKYKQVIVARADLKLSKGKLAAQVAHGAVTAAFEAYKKKREWFEAWFREGQKKVVVKVES 64

Query: 126 EEDMLVLQERAKSLKLPTHITIDAGRTQIAPNSRTVMAI-LGPVEVVDDVTGGLKLL 181
           EE++  L+  A+ L LP  +  DAG T+I P + TV+A+   P E+VD VTG LKLL
Sbjct: 65  EEELFKLKAEAEKLGLPNALIRDAGLTEIPPGTVTVLAVGPAPEEIVDKVTGNLKLL 121

>1rlk_A Hypothetical protein TA0108; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; HET: SO4; 1.95A {Thermoplasma acidophilum} SCOP: c.131.1.1 Length = 117

 Score =  146 bits (370), Expect = 4e-46
 Identities = 40/116 (34%), Positives = 62/116 (53%), Gaps = 1/116 (0%)

Query: 67  DFKMVLVVRNDLKMGKGKIAAQCSHATLGLYKKVLYRAPKALNRWEMCAQPKVVLKIESE 126
             KMV+ VR DL MGKGKIAAQ +HA +    + +       N W    Q K+V+K+   
Sbjct: 2   VKKMVIAVRKDLDMGKGKIAAQVAHAAVTCAIRSMKINRDVFNEWYDEGQRKIVVKVNDL 61

Query: 127 EDMLVLQERAKSLKLPTHITIDAGRTQIAPNSRTVMAI-LGPVEVVDDVTGGLKLL 181
           ++++ ++  A S+ +   I  D G TQ+ P + T + +     E +D +TG  KLL
Sbjct: 62  DEIMEIKRMADSMGIVNEIVQDRGYTQVEPGTITCIGLGPDEEEKLDKITGKYKLL 117

>1rzw_A Protein AF2095(GR4); beta-sheet of 4 parallel, anti-parallel beta-strands and 3 alpha-helices, structural genomics, PSI; NMR {Archaeoglobus fulgidus} SCOP: c.131.1.1 PDB: 3erj_A Length = 123

 Score =  144 bits (366), Expect = 2e-45
 Identities = 45/116 (38%), Positives = 67/116 (57%), Gaps = 4/116 (3%)

Query: 67  DFKMVLVVRNDLKMGKGKIAAQCSHATLGLYKKVLYRAPKALNRWEMCAQPKVVLKIESE 126
             K V+VVR+DLK+ +GK+A Q +HA +  Y K          +W    Q KVVLK++S 
Sbjct: 2   TLKQVIVVRDDLKLSRGKLAVQVAHAAIIGYLK---SDSSLRRKWLDEGQKKVVLKVKSL 58

Query: 127 EDMLVLQERAKSLKLPTHITIDAGRTQIAPNSRTVMAIL-GPVEVVDDVTGGLKLL 181
           E++L ++ +A+SL L T +  DAG T++ P + T + I       +D VTG L LL
Sbjct: 59  EELLGIKHKAESLGLVTGLVQDAGLTEVPPGTITAVVIGPDEERKIDKVTGNLPLL 114

>1xty_A PTH, peptidyl-tRNA hydrolase; mixed beta sheet; 1.80A {Pyrococcus abyssi} Length = 120

 Score =  142 bits (360), Expect = 1e-44
 Identities = 50/119 (42%), Positives = 77/119 (64%), Gaps = 5/119 (4%)

Query: 68  FKMVLVVRNDLKMGKGKIAAQCSHATLGLYKKVL----YRAPKALNRWEMCAQPKVVLKI 123
            KMV+VVR+D+KMGKGKIAAQ +HA + L   ++     R  + LN W    QPK+++K+
Sbjct: 2   IKMVIVVRSDIKMGKGKIAAQVAHAAVTLVVSIINSNNLRWKEWLNEWLHQGQPKIIVKV 61

Query: 124 ESEEDMLVLQERAKSLKLPTHITIDAGRTQIAPNSRTVMAI-LGPVEVVDDVTGGLKLL 181
            S ++++   ++A+++ LP  I  DAG+TQ+ P + T + I   P  +VD +TG LKLL
Sbjct: 62  NSLDEIISRAKKAETMNLPFSIIEDAGKTQLEPGTITCLGIGPAPENLVDSITGDLKLL 120

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	181
1rlk_A	117	Hypothetical protein TA0108; structural genomics,	100.0
1wn2_A	121	Peptidyl-tRNA hydrolase; riken structural genomics	100.0
1rzw_A	123	Protein AF2095(GR4); beta-sheet of 4 parallel, ant	100.0
2zv3_A	115	PTH, peptidyl-tRNA hydrolase; cytoplasm, structura	100.0
1q7s_A	117	BIT1, protein CGI-147; apoptosis; 2.00A {Homo sapi	100.0
1xty_A	120	PTH, peptidyl-tRNA hydrolase; mixed beta sheet; 1.	100.0
2gax_A	135	Hypothetical protein ATU0240; MCSG, structural gen	99.9

>1rlk_A Hypothetical protein TA0108; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; HET: SO4; 1.95A {Thermoplasma acidophilum} SCOP: c.131.1.1

Probab=100.00  E-value=6.6e-48  Score=295.62  Aligned_cols=116  Identities=34%  Similarity=0.503  Sum_probs=113.2

Q ss_pred             CCeEEEEEEeCCCCCCcchhhhHhhHHHHHHHHHHHhhCHHHHHHHHhcCCCeEEEecCCHHHHHHHHHHHHhCCCCeEE
Q 030232           66 DDFKMVLVVRNDLKMGKGKIAAQCSHATLGLYKKVLYRAPKALNRWEMCAQPKVVLKIESEEDMLVLQERAKSLKLPTHI  145 (181)
Q Consensus        66 ~~~kmvlvVR~DL~Ms~GKiAAQ~aHAal~~~~~~~~~~~~~l~~W~~~G~~KVvLk~~seeel~~L~~~A~~~gl~~~~  145 (181)
                      +++|||||||+||+||+||+||||||||+++|.++++++++++++|+.+||+||||+++|+++|++|.++|++.|||+++
T Consensus         1 ~e~k~vivvr~dL~m~~GKiaAQ~~HAa~~~~~~~~~~~~~~~~~W~~~g~~kiVlk~~~e~~l~~l~~~a~~~gl~~~~   80 (117)
T 1rlk_A            1 MVKKMVIAVRKDLDMGKGKIAAQVAHAAVTCAIRSMKINRDVFNEWYDEGQRKIVVKVNDLDEIMEIKRMADSMGIVNEI   80 (117)
T ss_dssp             -CEEEEEEEESTTCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCEEE
T ss_pred             CCcEEEEEEECCCCcCHhHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHCCCeEEEEecCCHHHHHHHHHHHHHCCCCEEE
Confidence            47999999999999999999999999999999999888999999999999999999999999999999999999999999


Q ss_pred             EEcCCCCccCCCCeeEEEe-cCCccchhhhcCCCCCC
Q 030232          146 TIDAGRTQIAPNSRTVMAI-LGPVEVVDDVTGGLKLL  181 (181)
Q Consensus       146 i~DAG~Tei~pgs~TvlAi-pgP~~~id~iTg~LKLl  181 (181)
                      |+|||||||||||.||+|| |||.+.||+||||||||
T Consensus        81 v~DAG~Tei~~gt~TvlaigP~~~~~vd~itg~lkL~  117 (117)
T 1rlk_A           81 VQDRGYTQVEPGTITCIGLGPDEEEKLDKITGKYKLL  117 (117)
T ss_dssp             EECCCSSSSSCCCEEEEEEEEEEHHHHHHHHTTSCBC
T ss_pred             EEeCCccCcCCCCEEEEEeCcCCHHHHHHHcCCCCCC
Confidence            9999999999999999999 99999999999999997

>1wn2_A Peptidyl-tRNA hydrolase; riken structural genomics/proteomics initiative, structural genomics; 1.20A {Pyrococcus horikoshii} PDB: 2d3k_A

Probab=100.00  E-value=1.3e-47  Score=295.76  Aligned_cols=116  Identities=42%  Similarity=0.622  Sum_probs=113.5

Q ss_pred             CCeEEEEEEeCCCCCCcchhhhHhhHHHHHHHHHHHhhCHHHHHHHHhcCCCeEEEecCCHHHHHHHHHHHHhCCCCeEE
Q 030232           66 DDFKMVLVVRNDLKMGKGKIAAQCSHATLGLYKKVLYRAPKALNRWEMCAQPKVVLKIESEEDMLVLQERAKSLKLPTHI  145 (181)
Q Consensus        66 ~~~kmvlvVR~DL~Ms~GKiAAQ~aHAal~~~~~~~~~~~~~l~~W~~~G~~KVvLk~~seeel~~L~~~A~~~gl~~~~  145 (181)
                      +++|||||||+||+||+||+||||||||+++|+++.+++++++++|+.+||+||||+++|+++|++|.++|++.|||+++
T Consensus         5 ~~~k~vivvr~dL~m~~GKiaAQ~~HAa~~~~~~~~~~~~~~~~~W~~~g~~Kvvlk~~~e~el~~l~~~a~~~gl~~~~   84 (121)
T 1wn2_A            5 FKYKQVIVARADLKLSKGKLAAQVAHGAVTAAFEAYKKKREWFEAWFREGQKKVVVKVESEEELFKLKAEAEKLGLPNAL   84 (121)
T ss_dssp             CCEEEEEEEESSSCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHTTCCEEE
T ss_pred             ccceEEEEEECCCCcCHhHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHCCCcEEEEecCCHHHHHHHHHHHHHCCCCEEE
Confidence            58999999999999999999999999999999998888999999999999999999999999999999999999999999


Q ss_pred             EEcCCCCccCCCCeeEEEe-cCCccchhhhcCCCCCC
Q 030232          146 TIDAGRTQIAPNSRTVMAI-LGPVEVVDDVTGGLKLL  181 (181)
Q Consensus       146 i~DAG~Tei~pgs~TvlAi-pgP~~~id~iTg~LKLl  181 (181)
                      |+|||||||||||.||+|| |||++.||+||||||||
T Consensus        85 i~DAG~Tei~~gt~TvlaigP~~~~~vd~itg~LkL~  121 (121)
T 1wn2_A           85 IRDAGLTEIPPGTVTVLAVGPAPEEIVDKVTGNLKLL  121 (121)
T ss_dssp             EECTTCTTSCTTCEEEEEEEEEEHHHHHHHHTTSEEC
T ss_pred             EEcCCccccCCCCEEEEEeccCCHHHHHHhcCCCCCC
Confidence            9999999999999999999 99999999999999997

>1rzw_A Protein AF2095(GR4); beta-sheet of 4 parallel, anti-parallel beta-strands and 3 alpha-helices, structural genomics, PSI; NMR {Archaeoglobus fulgidus} SCOP: c.131.1.1 PDB: 3erj_A

Probab=100.00  E-value=1.2e-47  Score=297.26  Aligned_cols=113  Identities=40%  Similarity=0.557  Sum_probs=109.9

Q ss_pred             CCeEEEEEEeCCCCCCcchhhhHhhHHHHHHHHHHHhhCHHHHHHHHhcCCCeEEEecCCHHHHHHHHHHHHhCCCCeEE
Q 030232           66 DDFKMVLVVRNDLKMGKGKIAAQCSHATLGLYKKVLYRAPKALNRWEMCAQPKVVLKIESEEDMLVLQERAKSLKLPTHI  145 (181)
Q Consensus        66 ~~~kmvlvVR~DL~Ms~GKiAAQ~aHAal~~~~~~~~~~~~~l~~W~~~G~~KVvLk~~seeel~~L~~~A~~~gl~~~~  145 (181)
                      +++|||||||+||+||+||+||||||||+++|+++   +++++++|+++||+||||+++|+++|++|.++|++.|||+++
T Consensus         1 ~~~k~vivVr~DL~M~~GKiaAQ~~HAa~~~~~~~---~~~~l~~W~~~G~~Kvvlk~~~e~el~~L~~~a~~~gl~~~~   77 (123)
T 1rzw_A            1 MTLKQVIVVRDDLKLSRGKLAVQVAHAAIIGYLKS---DSSLRRKWLDEGQKKVVLKVKSLEELLGIKHKAESLGLVTGL   77 (123)
T ss_dssp             CCCEEEEEEECCCSSCTTHHHHHHHHHHHHHHHHH---HTTHHHHTGGGCSSEEEEECSCHHHHHHHHHHHHHTTCCEEE
T ss_pred             CCcEEEEEEECCCCCCcchHHHHHHHHHHHHHHHc---CHHHHHHHHHCCCcEEEEecCCHHHHHHHHHHHHHCCCCEEE
Confidence            47999999999999999999999999999999987   678999999999999999999999999999999999999999


Q ss_pred             EEcCCCCccCCCCeeEEEe-cCCccchhhhcCCCCCC
Q 030232          146 TIDAGRTQIAPNSRTVMAI-LGPVEVVDDVTGGLKLL  181 (181)
Q Consensus       146 i~DAG~Tei~pgs~TvlAi-pgP~~~id~iTg~LKLl  181 (181)
                      |+|||||||||||.||+|| |+|++.||+||||||||
T Consensus        78 I~DAG~Tei~pgt~TvlaigP~p~~~vd~itg~LkL~  114 (123)
T 1rzw_A           78 VQDAGLTEVPPGTITAVVIGPDEERKIDKVTGNLPLL  114 (123)
T ss_dssp             ECCTTCCSCSTTSCEEEEEEEECHHHHHHHHTCSCCC
T ss_pred             EECCCCcccCCCCEEEEEeCcCCHHHHHHhcCCCeec
Confidence            9999999999999999999 99999999999999997

>2zv3_A PTH, peptidyl-tRNA hydrolase; cytoplasm, structural genomics, NPPSFA; 2.10A {Methanocaldococcus jannaschii}

Probab=100.00  E-value=1.6e-47  Score=292.71  Aligned_cols=114  Identities=43%  Similarity=0.659  Sum_probs=104.9

Q ss_pred             eEEEEEEeCCCCCCcchhhhHhhHHHHHHHHHHHhhCHHHHHHHHhcCCCeEEEecCCHHHHHHHHHHHHhCCCCeEEEE
Q 030232           68 FKMVLVVRNDLKMGKGKIAAQCSHATLGLYKKVLYRAPKALNRWEMCAQPKVVLKIESEEDMLVLQERAKSLKLPTHITI  147 (181)
Q Consensus        68 ~kmvlvVR~DL~Ms~GKiAAQ~aHAal~~~~~~~~~~~~~l~~W~~~G~~KVvLk~~seeel~~L~~~A~~~gl~~~~i~  147 (181)
                      +|||||||+||+||+||+||||||||+++|+++.+++++++++|+.+||+||||+++|+++|++|.++|++.|||+++|+
T Consensus         1 ~k~vivvr~dL~m~~GKiaAQ~~HAa~~~~~~~~~~~~~~~~~W~~~g~~kivlk~~~e~~l~~l~~~a~~~gl~~~~i~   80 (115)
T 2zv3_A            1 MKMVVVIRNDLGMGKGKMVAQGGHAIIEAFLDAKRKNPRAVDEWLREGQKKVVVKVNSEKELIDIYNKARSEGLPCSIIR   80 (115)
T ss_dssp             CEEEEEEESSSCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCEEEEE
T ss_pred             CEEEEEEECCCCcCHhHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHCCCeEEEEecCCHHHHHHHHHHHHHcCCCEEEEE
Confidence            69999999999999999999999999999999988899999999999999999999999999999999999999999999


Q ss_pred             cCCCCccCCCCeeEEEe-cCCccchhhhcCCCCCC
Q 030232          148 DAGRTQIAPNSRTVMAI-LGPVEVVDDVTGGLKLL  181 (181)
Q Consensus       148 DAG~Tei~pgs~TvlAi-pgP~~~id~iTg~LKLl  181 (181)
                      |||||||||||.||+|| |||++.||+||||||||
T Consensus        81 DAG~Tei~~gt~TvlaigP~~~~~vd~itg~lkL~  115 (115)
T 2zv3_A           81 DAGHTQLEPGTLTAVAIGPEKDEKIDKITGHLKLL  115 (115)
T ss_dssp             ECC-------EEEEEEEEEECHHHHHHHHTTSCBC
T ss_pred             eCCceecCCCCEEEEEeCcCCHHHHHHHhCCCCCC
Confidence            99999999999999999 99999999999999997

>1q7s_A BIT1, protein CGI-147; apoptosis; 2.00A {Homo sapiens} SCOP: c.131.1.1

Probab=100.00  E-value=1.1e-47  Score=294.31  Aligned_cols=116  Identities=56%  Similarity=0.925  Sum_probs=113.4

Q ss_pred             CCeEEEEEEeCCCCCCcchhhhHhhHHHHHHHHHHHhhCHHHHHHHHhcCCCeEEEecCCHHHHHHHHHHHHhCCCCeEE
Q 030232           66 DDFKMVLVVRNDLKMGKGKIAAQCSHATLGLYKKVLYRAPKALNRWEMCAQPKVVLKIESEEDMLVLQERAKSLKLPTHI  145 (181)
Q Consensus        66 ~~~kmvlvVR~DL~Ms~GKiAAQ~aHAal~~~~~~~~~~~~~l~~W~~~G~~KVvLk~~seeel~~L~~~A~~~gl~~~~  145 (181)
                      +++|||||||+||+||+||+||||||||+++|+++.+++++++++|++.||+||||+++|+++|++|.++|++.|||+++
T Consensus         1 ~~~K~vivvr~dL~m~~GKiaAQ~~HAa~~~~~~~~~~~~~~~~~W~~~g~~KVvlk~~~e~~l~~l~~~a~~~gl~~~~   80 (117)
T 1q7s_A            1 GEYKMILVVRNDLKMGKGKVAAQCSHAAVSAYKQIQRRNPEMLKQWEYCGQPKVVVKAPDEETLIALLAHAKMLGLTVSL   80 (117)
T ss_dssp             CCEEEEEEEEGGGCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHTTCCEEE
T ss_pred             CCeEEEEEEECCCCcCHhHHHHHHHHHHHHHHHHHHhhCHHHHHHHHhCCCeeEEEEcCCHHHHHHHHHHHHHCCCCEEE
Confidence            47999999999999999999999999999999998788999999999999999999999999999999999999999999


Q ss_pred             EEcCCCCccCCCCeeEEEe-cCCccchhhhcCCCCCC
Q 030232          146 TIDAGRTQIAPNSRTVMAI-LGPVEVVDDVTGGLKLL  181 (181)
Q Consensus       146 i~DAG~Tei~pgs~TvlAi-pgP~~~id~iTg~LKLl  181 (181)
                      |+|||||||||||.||+|| |||.+.||+||||||||
T Consensus        81 i~DAG~Tqi~~gt~TvlaigP~~~~~vd~itg~lkL~  117 (117)
T 1q7s_A           81 IQDAGRTQIAPGSQTVLGIGPGPADLIDKVTGHLKLY  117 (117)
T ss_dssp             EEECSSSSEEEEEEEEEEEEEEEHHHHHHHHTTSCBC
T ss_pred             EEECCCcccCCCCeEEEEeccCCHHHHHHhcCCCCCC
Confidence            9999999999999999999 99999999999999997

>1xty_A PTH, peptidyl-tRNA hydrolase; mixed beta sheet; 1.80A {Pyrococcus abyssi}

Probab=100.00  E-value=4.5e-47  Score=292.13  Aligned_cols=115  Identities=43%  Similarity=0.700  Sum_probs=111.4

Q ss_pred             CeEEEEEEeCCCCCCcchhhhHhhHHHHHHHHHHHhhC----HHHHHHHHhcCCCeEEEecCCHHHHHHHHHHHHhCCCC
Q 030232           67 DFKMVLVVRNDLKMGKGKIAAQCSHATLGLYKKVLYRA----PKALNRWEMCAQPKVVLKIESEEDMLVLQERAKSLKLP  142 (181)
Q Consensus        67 ~~kmvlvVR~DL~Ms~GKiAAQ~aHAal~~~~~~~~~~----~~~l~~W~~~G~~KVvLk~~seeel~~L~~~A~~~gl~  142 (181)
                      ++|||||||+||+||+||+||||||||+++|+++.+++    ++++++|+.+||+||||+++|+++|++|.++|++.|||
T Consensus         1 ~~k~vivvr~dL~m~~GKiaAQ~~HAa~~~~~~~~~~~~~~~~~~~~~W~~~g~~KiVlk~~~e~el~~l~~~a~~~gl~   80 (120)
T 1xty_A            1 MIKMVIVVRSDIKMGKGKIAAQVAHAAVTLVVSIINSNNLRWKEWLNEWLHQGQPKIIVKVNSLDEIISRAKKAETMNLP   80 (120)
T ss_dssp             CEEEEEEEESSSCCCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHTTCC
T ss_pred             CcEEEEEEECCCCcCHhHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHCCCcEEEEecCCHHHHHHHHHHHHHCCCC
Confidence            48999999999999999999999999999999987665    88999999999999999999999999999999999999


Q ss_pred             eEEEEcCCCCccCCCCeeEEEe-cCCccchhhhcCCCCCC
Q 030232          143 THITIDAGRTQIAPNSRTVMAI-LGPVEVVDDVTGGLKLL  181 (181)
Q Consensus       143 ~~~i~DAG~Tei~pgs~TvlAi-pgP~~~id~iTg~LKLl  181 (181)
                      +++|+|||||||||||.||+|| |||++.||+||||||||
T Consensus        81 ~~~i~DAG~Tei~~gs~TvlaigP~~~~~vd~itg~LkL~  120 (120)
T 1xty_A           81 FSIIEDAGKTQLEPGTITCLGIGPAPENLVDSITGDLKLL  120 (120)
T ss_dssp             EEEEECCSSSSSCTTCEEEEEEEEEEHHHHHHHHTTCEEC
T ss_pred             EEEEEcCCccccCCCCeEEEEeccCCHHHHHHHhCCCCCC
Confidence            9999999999999999999999 99999999999999997

>2gax_A Hypothetical protein ATU0240; MCSG, structural genomics, agrobacterium tumfaciens, hypothe protein, PSI; 1.80A {Agrobacterium tumefaciens str} SCOP: c.131.1.1

Probab=99.90  E-value=4.2e-25  Score=172.82  Aligned_cols=112  Identities=21%  Similarity=0.331  Sum_probs=103.8

Q ss_pred             CeEEEEEEeCCCCCCcchhhhHhhHHHHHHHHHHH------hhCHHHHHHHHhcCCCeEEEecCCHHHHHHHHHHHHhCC
Q 030232           67 DFKMVLVVRNDLKMGKGKIAAQCSHATLGLYKKVL------YRAPKALNRWEMCAQPKVVLKIESEEDMLVLQERAKSLK  140 (181)
Q Consensus        67 ~~kmvlvVR~DL~Ms~GKiAAQ~aHAal~~~~~~~------~~~~~~l~~W~~~G~~KVvLk~~seeel~~L~~~A~~~g  140 (181)
                      +.|+|||||.||+|+  ++++||||++++++.+..      .++++...+|...+|+++||++++ ++|.+|.++|.+.|
T Consensus         3 ~~K~viVv~~dL~~g--~~aN~aA~l~~gl~~~~~~~~G~~~~d~~g~~~~~~~~~p~~VL~a~~-~~L~~l~~~a~~~~   79 (135)
T 2gax_A            3 DTKIAVILRDDLAVW--QKLNVTAFLMSGIVAQTGEIIGEPYRDGAGNVYNPLSIQPIVVMATDQ-EALRKIHQRSLERD   79 (135)
T ss_dssp             SEEEEEEEETTSCHH--HHHHHHHHHHHHHHHHCGGGBCSCEECTTSCEECCCBSSCEEEEEECH-HHHHHHHHHHHHTT
T ss_pred             CcEEEEEEcCCChHH--HHHHHHHHHHHHHHHhChhhcCCcccCcccccccccCCCcEEEEEECH-HHHHHHHHHHHHCC
Confidence            679999999999987  999999999999998753      236677889999999999999977 99999999999999


Q ss_pred             CCeEEEEcCCC------------CccCCCCeeEEEe--cCCccchhhhcCCCCCC
Q 030232          141 LPTHITIDAGR------------TQIAPNSRTVMAI--LGPVEVVDDVTGGLKLL  181 (181)
Q Consensus       141 l~~~~i~DAG~------------Tei~pgs~TvlAi--pgP~~~id~iTg~LKLl  181 (181)
                      |++..+.|+|+            ||++|++.|++||  |||++.||++||+|||.
T Consensus        80 l~~~~f~d~~~~~~~~~~~~~~~~~~~~~~l~~~GI~l~Gp~k~VdklTg~L~L~  134 (135)
T 2gax_A           80 ITTSLYIEEMFATGHDAANRQVFSHFSPDTAKVVGMALRADRKIVDKITKGAKLH  134 (135)
T ss_dssp             CCCEEEEGGGGGCCCHHHHHHHHTTCCTTTCCEEEEEEEEEHHHHHHHTTTCEEC
T ss_pred             CcEEeccHHhhhCCCHHHHHHHHhcCCcccceEEEEEEECCHHHHHHHhCCCCCC
Confidence            99999999999            9999999999999  79999999999999985

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	181
d1q7sa_	117	c.131.1.1 (A:) Bit1 (Cgi-147) {Human (Homo sapiens	6e-50
d1rlka_	116	c.131.1.1 (A:) Hypothetical protein TA0108 {Archae	6e-47
d3erja1	116	c.131.1.1 (A:2-117) Hypothetical protein AF2095 {A	6e-46
d2gaxa1	135	c.131.1.1 (A:1-135) Hypothetical protein Atu0240 {	5e-04

>d1q7sa_ c.131.1.1 (A:) Bit1 (Cgi-147) {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: Alpha and beta proteins (a/b)
fold: Peptidyl-tRNA hydrolase II
superfamily: Peptidyl-tRNA hydrolase II
family: Peptidyl-tRNA hydrolase II
domain: Bit1 (Cgi-147)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  154 bits (392), Expect = 6e-50
 Identities = 65/115 (56%), Positives = 83/115 (72%), Gaps = 1/115 (0%)

Query: 67  DFKMVLVVRNDLKMGKGKIAAQCSHATLGLYKKVLYRAPKALNRWEMCAQPKVVLKIESE 126
           ++KM+LVVRNDLKMGKGK+AAQCSHA +  YK++  R P+ L +WE C QPKVV+K   E
Sbjct: 2   EYKMILVVRNDLKMGKGKVAAQCSHAAVSAYKQIQRRNPEMLKQWEYCGQPKVVVKAPDE 61

Query: 127 EDMLVLQERAKSLKLPTHITIDAGRTQIAPNSRTVMAI-LGPVEVVDDVTGGLKL 180
           E ++ L   AK L L   +  DAGRTQIAP S+TV+ I  GP +++D VTG LKL
Sbjct: 62  ETLIALLAHAKMLGLTVSLIQDAGRTQIAPGSQTVLGIGPGPADLIDKVTGHLKL 116

>d1rlka_ c.131.1.1 (A:) Hypothetical protein TA0108 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 116

class: Alpha and beta proteins (a/b)
fold: Peptidyl-tRNA hydrolase II
superfamily: Peptidyl-tRNA hydrolase II
family: Peptidyl-tRNA hydrolase II
domain: Hypothetical protein TA0108
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score =  147 bits (372), Expect = 6e-47
 Identities = 40/115 (34%), Positives = 62/115 (53%), Gaps = 1/115 (0%)

Query: 68  FKMVLVVRNDLKMGKGKIAAQCSHATLGLYKKVLYRAPKALNRWEMCAQPKVVLKIESEE 127
            KMV+ VR DL MGKGKIAAQ +HA +    + +       N W    Q K+V+K+   +
Sbjct: 2   KKMVIAVRKDLDMGKGKIAAQVAHAAVTCAIRSMKINRDVFNEWYDEGQRKIVVKVNDLD 61

Query: 128 DMLVLQERAKSLKLPTHITIDAGRTQIAPNSRTVMAIL-GPVEVVDDVTGGLKLL 181
           +++ ++  A S+ +   I  D G TQ+ P + T + +     E +D +TG  KLL
Sbjct: 62  EIMEIKRMADSMGIVNEIVQDRGYTQVEPGTITCIGLGPDEEEKLDKITGKYKLL 116

>d3erja1 c.131.1.1 (A:2-117) Hypothetical protein AF2095 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 116

class: Alpha and beta proteins (a/b)
fold: Peptidyl-tRNA hydrolase II
superfamily: Peptidyl-tRNA hydrolase II
family: Peptidyl-tRNA hydrolase II
domain: Hypothetical protein AF2095
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score =  144 bits (366), Expect = 6e-46
 Identities = 45/114 (39%), Positives = 67/114 (58%), Gaps = 4/114 (3%)

Query: 69  KMVLVVRNDLKMGKGKIAAQCSHATLGLYKKVLYRAPKALNRWEMCAQPKVVLKIESEED 128
           K V+VVR+DLK+ +GK+A Q +HA +  Y K          +W    Q KVVLK++S E+
Sbjct: 3   KQVIVVRDDLKLSRGKLAVQVAHAAIIGYLK---SDSSLRRKWLDEGQKKVVLKVKSLEE 59

Query: 129 MLVLQERAKSLKLPTHITIDAGRTQIAPNSRTVMAIL-GPVEVVDDVTGGLKLL 181
           +L ++ +A+SL L T +  DAG T++ P + T + I       +D VTG L LL
Sbjct: 60  LLGIKHKAESLGLVTGLVQDAGLTEVPPGTITAVVIGPDEERKIDKVTGNLPLL 113

>d2gaxa1 c.131.1.1 (A:1-135) Hypothetical protein Atu0240 {Agrobacterium tumefaciens [TaxId: 358]} Length = 135

class: Alpha and beta proteins (a/b)
fold: Peptidyl-tRNA hydrolase II
superfamily: Peptidyl-tRNA hydrolase II
family: Peptidyl-tRNA hydrolase II
domain: Hypothetical protein Atu0240
species: Agrobacterium tumefaciens [TaxId: 358]

 Score = 36.2 bits (84), Expect = 5e-04
 Identities = 25/136 (18%), Positives = 50/136 (36%), Gaps = 23/136 (16%)

Query: 65  LDDFKMVLVVRNDLKMGKGKIAAQCSHATLGLYKKV------LYRAPKALNRWEMCAQPK 118
           + D K+ +++R+DL + +       +    G+  +        YR         +  QP 
Sbjct: 1   MFDTKIAVILRDDLAVWQ--KLNVTAFLMSGIVAQTGEIIGEPYRDGAGNVYNPLSIQPI 58

Query: 119 VVLKIESEEDMLVLQERAKSLKLPTHITIDAGRT------QIAPNSRT--------VMAI 164
           VV+    +E +  + +R+    + T + I+               S           MA+
Sbjct: 59  VVMA-TDQEALRKIHQRSLERDITTSLYIEEMFATGHDAANRQVFSHFSPDTAKVVGMAL 117

Query: 165 LGPVEVVDDVTGGLKL 180
               ++VD +T G KL
Sbjct: 118 RADRKIVDKITKGAKL 133

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	181
d1rlka_	116	Hypothetical protein TA0108 {Archaeon Thermoplasma	100.0
d1q7sa_	117	Bit1 (Cgi-147) {Human (Homo sapiens) [TaxId: 9606]	100.0
d3erja1	116	Hypothetical protein AF2095 {Archaeoglobus fulgidu	100.0
d2gaxa1	135	Hypothetical protein Atu0240 {Agrobacterium tumefa	98.19

>d1rlka_ c.131.1.1 (A:) Hypothetical protein TA0108 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: Peptidyl-tRNA hydrolase II
superfamily: Peptidyl-tRNA hydrolase II
family: Peptidyl-tRNA hydrolase II
domain: Hypothetical protein TA0108
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=100.00  E-value=3.1e-48  Score=295.91  Aligned_cols=114  Identities=35%  Similarity=0.529  Sum_probs=112.1

Q ss_pred             eEEEEEEeCCCCCCcchhhhHhhHHHHHHHHHHHhhCHHHHHHHHhcCCCeEEEecCCHHHHHHHHHHHHhCCCCeEEEE
Q 030232           68 FKMVLVVRNDLKMGKGKIAAQCSHATLGLYKKVLYRAPKALNRWEMCAQPKVVLKIESEEDMLVLQERAKSLKLPTHITI  147 (181)
Q Consensus        68 ~kmvlvVR~DL~Ms~GKiAAQ~aHAal~~~~~~~~~~~~~l~~W~~~G~~KVvLk~~seeel~~L~~~A~~~gl~~~~i~  147 (181)
                      .|||||||+||+||+||+||||||||+.+|.++.+++++++.+|...||+||||+++|+++|++|.++|++.||++++|+
T Consensus         2 ~KmvivVR~DL~Ms~GKiaAQ~~HAav~~~~~~~~~~~~~~~~W~~~g~~KIvl~v~~e~~L~~l~~~a~~~~l~~~~v~   81 (116)
T d1rlka_           2 KKMVIAVRKDLDMGKGKIAAQVAHAAVTCAIRSMKINRDVFNEWYDEGQRKIVVKVNDLDEIMEIKRMADSMGIVNEIVQ   81 (116)
T ss_dssp             EEEEEEEESTTCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCEEEEE
T ss_pred             eeEEEEEeCCCCCCcchHHHHHHHHHHHHHHHHHhcCHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHHCCCCEEEEE
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCccCCCCeeEEEe-cCCccchhhhcCCCCCC
Q 030232          148 DAGRTQIAPNSRTVMAI-LGPVEVVDDVTGGLKLL  181 (181)
Q Consensus       148 DAG~Tei~pgs~TvlAi-pgP~~~id~iTg~LKLl  181 (181)
                      |||||||||||.||+|| |+|++.||+||||||||
T Consensus        82 DAG~Tei~pgt~TvlaigP~~~~~id~itg~LkLL  116 (116)
T d1rlka_          82 DRGYTQVEPGTITCIGLGPDEEEKLDKITGKYKLL  116 (116)
T ss_dssp             CCCSSSSSCCCEEEEEEEEEEHHHHHHHHTTSCBC
T ss_pred             CCCCcccCCCCeEEEEECCCCHHHHHHHhCcCcCC
Confidence            99999999999999999 99999999999999997

>d1q7sa_ c.131.1.1 (A:) Bit1 (Cgi-147) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Peptidyl-tRNA hydrolase II
superfamily: Peptidyl-tRNA hydrolase II
family: Peptidyl-tRNA hydrolase II
domain: Bit1 (Cgi-147)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-48  Score=297.95  Aligned_cols=116  Identities=56%  Similarity=0.925  Sum_probs=113.7

Q ss_pred             CCeEEEEEEeCCCCCCcchhhhHhhHHHHHHHHHHHhhCHHHHHHHHhcCCCeEEEecCCHHHHHHHHHHHHhCCCCeEE
Q 030232           66 DDFKMVLVVRNDLKMGKGKIAAQCSHATLGLYKKVLYRAPKALNRWEMCAQPKVVLKIESEEDMLVLQERAKSLKLPTHI  145 (181)
Q Consensus        66 ~~~kmvlvVR~DL~Ms~GKiAAQ~aHAal~~~~~~~~~~~~~l~~W~~~G~~KVvLk~~seeel~~L~~~A~~~gl~~~~  145 (181)
                      +++|||||||+||+||+||+||||||||+++|..+.+++++++.+|..+||+||||+++|+++|++|.++|++.||++++
T Consensus         1 ge~K~vivVR~DL~ms~GKiaAQ~~HAav~~~~~~~~~~~~~~~~W~~~g~~KIvl~v~~e~~l~~l~~~a~~~~l~~~~   80 (117)
T d1q7sa_           1 GEYKMILVVRNDLKMGKGKVAAQCSHAAVSAYKQIQRRNPEMLKQWEYCGQPKVVVKAPDEETLIALLAHAKMLGLTVSL   80 (117)
T ss_dssp             CCEEEEEEEEGGGCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHTTCCEEE
T ss_pred             CCEEEEEEEECCCCCChhHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHCCCcEEEEecCCHHHHHHHHHHHHHCCCCEEE
Confidence            47999999999999999999999999999999999889999999999999999999999999999999999999999999


Q ss_pred             EEcCCCCccCCCCeeEEEe-cCCccchhhhcCCCCCC
Q 030232          146 TIDAGRTQIAPNSRTVMAI-LGPVEVVDDVTGGLKLL  181 (181)
Q Consensus       146 i~DAG~Tei~pgs~TvlAi-pgP~~~id~iTg~LKLl  181 (181)
                      |+|||||||||||.||||| |+|++.||+||||||||
T Consensus        81 i~DAG~Tei~~gt~TvlaigP~~~~~id~itg~LkLy  117 (117)
T d1q7sa_          81 IQDAGRTQIAPGSQTVLGIGPGPADLIDKVTGHLKLY  117 (117)
T ss_dssp             EEECSSSSEEEEEEEEEEEEEEEHHHHHHHHTTSCBC
T ss_pred             EEcCCCcccCCCCeEEEEECCCCHHHHHHHhCCCCCC
Confidence            9999999999999999999 99999999999999998

>d3erja1 c.131.1.1 (A:2-117) Hypothetical protein AF2095 {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: Peptidyl-tRNA hydrolase II
superfamily: Peptidyl-tRNA hydrolase II
family: Peptidyl-tRNA hydrolase II
domain: Hypothetical protein AF2095
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=100.00  E-value=1.3e-46  Score=286.93  Aligned_cols=112  Identities=40%  Similarity=0.573  Sum_probs=108.1

Q ss_pred             CeEEEEEEeCCCCCCcchhhhHhhHHHHHHHHHHHhhCHHHHHHHHhcCCCeEEEecCCHHHHHHHHHHHHhCCCCeEEE
Q 030232           67 DFKMVLVVRNDLKMGKGKIAAQCSHATLGLYKKVLYRAPKALNRWEMCAQPKVVLKIESEEDMLVLQERAKSLKLPTHIT  146 (181)
Q Consensus        67 ~~kmvlvVR~DL~Ms~GKiAAQ~aHAal~~~~~~~~~~~~~l~~W~~~G~~KVvLk~~seeel~~L~~~A~~~gl~~~~i  146 (181)
                      .+|||||||+||+||+||+|||||||++.+|.+   .+++++.+|...||+||||+++|+++|++|.++|++.||++++|
T Consensus         1 ~~K~vivvR~DL~Ms~GKiaAQ~~HAav~~~~~---~~~~~~~~W~~~g~~KIvl~v~~e~~L~~l~~~a~~~~l~~~~i   77 (116)
T d3erja1           1 TLKQVIVVRDDLKLSRGKLAVQVAHAAIIGYLK---SDSSLRRKWLDEGQKKVVLKVKSLEELLGIKHKAESLGLVTGLV   77 (116)
T ss_dssp             CEEEEEEEESSSCCCHHHHHHHHHHHHHHHHHH---SCHHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCEEEE
T ss_pred             CeeEEEEEECCCCCCcchHHHHHHHHHHHHHHH---hCcHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHHCCCCEEEE
Confidence            379999999999999999999999999999875   48899999999999999999999999999999999999999999


Q ss_pred             EcCCCCccCCCCeeEEEe-cCCccchhhhcCCCCCC
Q 030232          147 IDAGRTQIAPNSRTVMAI-LGPVEVVDDVTGGLKLL  181 (181)
Q Consensus       147 ~DAG~Tei~pgs~TvlAi-pgP~~~id~iTg~LKLl  181 (181)
                      +|||||||||||.||+|| |+|++.||+||||||||
T Consensus        78 ~DAG~Tei~~gt~TvlaigP~~~~~id~itg~LkLl  113 (116)
T d3erja1          78 QDAGLTEVPPGTITAVVIGPDEERKIDKVTGNLPLL  113 (116)
T ss_dssp             CCTTCSSSCTTCCCEEEEEEEEHHHHHHHHTTCCBC
T ss_pred             EcCCCcccCCCCeEEEEECCCCHHHHHHHhCcCccc
Confidence            999999999999999999 99999999999999997

>d2gaxa1 c.131.1.1 (A:1-135) Hypothetical protein Atu0240 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: Peptidyl-tRNA hydrolase II
superfamily: Peptidyl-tRNA hydrolase II
family: Peptidyl-tRNA hydrolase II
domain: Hypothetical protein Atu0240
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.19  E-value=1.1e-06  Score=66.51  Aligned_cols=108  Identities=20%  Similarity=0.366  Sum_probs=82.3

Q ss_pred             CeEEEEEEeCCCCCCcchhhhHhhHHHHHHHHHHHhhCHHHH-HHHH---------hcCCCeEEEecCCHHHHHHHHHHH
Q 030232           67 DFKMVLVVRNDLKMGKGKIAAQCSHATLGLYKKVLYRAPKAL-NRWE---------MCAQPKVVLKIESEEDMLVLQERA  136 (181)
Q Consensus        67 ~~kmvlvVR~DL~Ms~GKiAAQ~aHAal~~~~~~~~~~~~~l-~~W~---------~~G~~KVvLk~~seeel~~L~~~A  136 (181)
                      +-|.++|||.||.  .|.++-=++|-+++.-..    .|+.+ ..|.         ...++-+||+. |.+.|.++.++|
T Consensus         3 dtK~viVi~~~L~--~g~~lN~~A~L~~glg~~----~peliG~~y~D~~G~~h~~i~~~Pv~VL~a-~~~~L~~l~~~a   75 (135)
T d2gaxa1           3 DTKIAVILRDDLA--VWQKLNVTAFLMSGIVAQ----TGEIIGEPYRDGAGNVYNPLSIQPIVVMAT-DQEALRKIHQRS   75 (135)
T ss_dssp             SEEEEEEEETTSC--HHHHHHHHHHHHHHHHHH----CGGGBCSCEECTTSCEECCCBSSCEEEEEE-CHHHHHHHHHHH
T ss_pred             ccEEEEEECCCCH--HHHHHHHHHHHHHHHhhc----CccccCCcccCCCCCcccccCCCCEEEEEC-CHHHHHHHHHHH
Confidence            4699999999998  678888889988887654    23321 1111         24689999999 688999999999


Q ss_pred             HhCCCCeEEEEcCCC------------CccCCCCeeEEEe--cCCccchhhhcCCCCCC
Q 030232          137 KSLKLPTHITIDAGR------------TQIAPNSRTVMAI--LGPVEVVDDVTGGLKLL  181 (181)
Q Consensus       137 ~~~gl~~~~i~DAG~------------Tei~pgs~TvlAi--pgP~~~id~iTg~LKLl  181 (181)
                      .+++|++....+.=+            .+.++.....++|  -||+..||++||+|+|+
T Consensus        76 l~~~i~~~~f~~~m~~t~~~~~~~~~~~~~~~~dl~~vGial~G~kk~Vdklt~~l~Lh  134 (135)
T d2gaxa1          76 LERDITTSLYIEEMFATGHDAANRQVFSHFSPDTAKVVGMALRADRKIVDKITKGAKLH  134 (135)
T ss_dssp             HHTTCCCEEEEGGGGGCCCHHHHHHHHTTCCTTTCCEEEEEEEEEHHHHHHHTTTCEEC
T ss_pred             hcCCCceeechHHHHhcCCHHHHHHHHhccChhhccEEEEEEECCHHHHHHHhcCCCCC
Confidence            999999887765422            1445566666666  69999999999999985