Citrus Sinensis ID: 030244

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180
Protein Sequence
MRTLLSSQNPLLLFQKPSVWNLRSSFTHPTTQQSLTSHPTTSWKLHANAKGFGARNTSPPASLNKSASDDENNNNNNSDEDHLPQVVLERIIVRILVSVGVPLATGIASLHFFGVVKEKQLFDLPLWIPLVTTFLTFGLSAVGIAYGSLSSSWDAEKQGSLLGFEEAKQNWVEIWNEDDG
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHEEEccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccEEEEccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccHHccccccccHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHEEEEcccccccccccccHHHHHHcHHHHHHHccc
Coil and Loop (DISEMBL)
mrtllssqnplllfqkpsvwnlrssfthpttqqsltshpttswklhanakgfgarntsppaslnksasddennnnnnsdedhlpQVVLERIIVRILVSVGVPLATGIASlhffgvvkekqlfdlplwipLVTTFLTFGLSAVGIAYgslssswdaekqgSLLGFEEAKQNWVEIWNEDDG
Flexible Loop (DISEMBL)
mrtllssqnplllfqkpsvWNLRSSFTHPTTQQSLTSHPTTSWKLHANAKGFGARNTSPPASLNKSasddennnnnnsdedhlpQVVLERIIVRILVSVGVPLATGIASLHFFGVVKEKQLFDLPLWIPLVTTFLTFGLSAVGIAYGSLSSSWDAEKQGSLLGFEEAKQNWVEIWNEDDG
Low Complexity Region (SEG)
MRTLLSSQNPLLLFQKPSVWNLRSSFTHPTTQQSLTSHPTTSWKLHANAKGFGARNTSPPASLNKSAsddennnnnnsdedHLPQvvleriivrilvsvGVPLATGIASLHFFGVVKEKQLFDLPLWIPLVTTFLTFGLSAVGIAYGSLSSSWDAEKQGSLLGFEEAKQNWVEIWNEDDG
Disordered region (IsUnstruct)
***********LLFQKPSVWNL**************************************************************QVVLERIIVRILVSVGVPLATGIASLHFFGVVKEKQLFDLPLWIPLVTTFLTFGLSAVGIAYGSLSSSWDAEKQGSLLGFEEAKQNWVEIW*****
Disordered Region (DISOPRED)
**************************************************************************************VLERIIVRILVSVGVPLATGIASLHFFGVVKEKQLFDLPLWIPLVTTFLTFGLSAVGIAYGSLSSSWDAEKQGSLLGFEEAKQNWVEIWNE***
Disordered Region (DISEMBL)
MRTLLSSQNPLLLFQKPSVWNLRSSFT*************TSWKLHANAKGFG**********************NNSDEDHLPQVVLERIIVRILVSVGVPLATGIASLHFFGVVKEKQLFDLPLWIPLVTTFLTFGLSAVGIAYGSLSSSWDAEKQGSLLGFEEAKQNWVEIWNEDDG
Disordered Region (DISPRO)
*RTLLSSQNPLLLFQKPS**************************************************************DHLPQVVLERIIVRILVSVGVPLATGIASLHFFGVVKEKQLFDLPLWIPLVTTFLTFGLSAVGIAYGSLSSSWDAEKQGSLLGFEEAKQNWVEIWNED**
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MRTLLSSQNPLLLFQKPSVWNLRSSFTHPTTQQSLTSHPTTSWKLHANAKGFGARNTSPPASLNKSASDDENNNNNNSDEDHLPQVVLERIIVRILVSVGVPLATGIASLHFFGVVKEKQLFDLPLWIPLVTTFLTFGLSAVGIAYGSLSSSWDAEKQGSLLGFEEAKQNWVEIWNEDDG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	180	2.2.26 [Sep-21-2011]
Q9LTD9	168	Uncharacterized protein P	yes	no	0.933	1.0	0.407	1e-26
O49668	214	Protein PAM68, chloroplas	no	no	0.538	0.453	0.402	7e-18

>sp|Q9LTD9|Y5278_ARATH Uncharacterized protein PAM68-like OS=Arabidopsis thaliana GN=At5g52780 PE=2 SV=1

 Score =  119 bits (297), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 73/179 (40%), Positives = 100/179 (55%), Gaps = 11/179 (6%)

Query: 1   MRTLLSSQNPLLLFQKPSVWNLRSSFTHPTTQQSLTSHPTTSWKLHANAKGFGARNTSPP 60
           MR LL S   LL     S   +++   +P T     + P    KLHA  KGF +  TS  
Sbjct: 1   MRALLCSHR-LLPLSSLSRTTVKTKSHNPKTLYP-NNKPRWESKLHAGPKGFQSSRTSEK 58

Query: 61  ASLNKSASDDENNNNNNSDEDHLPQVVLERIIVRILVSVGVPLATGIASLHFFGVVKEKQ 120
                   +D+             Q V ER++ RI+VSVG PL  G+A L    V+K++ 
Sbjct: 59  PGRPDPDPEDDPPIP---------QEVFERMMGRIVVSVGTPLGLGVAILKVLEVLKDRN 109

Query: 121 LFDLPLWIPLVTTFLTFGLSAVGIAYGSLSSSWDAEKQGSLLGFEEAKQNWVEIWNEDD 179
           ++D+PLW+P +TT +TFG SA+GIAYGSLS++ D  K  SL G +EAK+NWVE+W ED 
Sbjct: 110 VWDVPLWVPYLTTLVTFGSSALGIAYGSLSTNLDPAKTNSLFGLKEAKENWVEMWKEDQ 168

Arabidopsis thaliana (taxid: 3702)

>sp|O49668|PAM68_ARATH Protein PAM68, chloroplastic OS=Arabidopsis thaliana GN=PAM68 PE=1 SV=1

 Score = 90.1 bits (222), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 39/97 (40%), Positives = 62/97 (63%)

Query: 79  DEDHLPQVVLERIIVRILVSVGVPLATGIASLHFFGVVKEKQLFDLPLWIPLVTTFLTFG 138
           +   +P++V  R+I R+  +VG+PL  G+    FF  +K     D+P W+P + +F+ FG
Sbjct: 108 ERGVIPEIVTNRMISRMGFTVGLPLFIGLLFFPFFYYLKVGLKVDVPTWVPFIVSFVFFG 167

Query: 139 LSAVGIAYGSLSSSWDAEKQGSLLGFEEAKQNWVEIW 175
            +  G++YG +SSSWD  ++GSLLG+ EAK+NW   W
Sbjct: 168 TALAGVSYGIVSSSWDPLREGSLLGWNEAKKNWPVFW 204

Involved in early steps in photosystem II (PSII) biogenesis and in maturation and stability of newly synthesized psbA protein.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	180
255545166	183	conserved hypothetical protein [Ricinus	0.983	0.967	0.505	1e-41
225464604	178	PREDICTED: uncharacterized LOC100266405	0.955	0.966	0.478	4e-40
224079762	182	predicted protein [Populus trichocarpa]	0.972	0.961	0.430	2e-36
449465705	180	PREDICTED: uncharacterized protein PAM68	0.961	0.961	0.461	5e-36
147787208	591	hypothetical protein VITISV_002983 [Viti	0.861	0.262	0.452	2e-32
388491308	183	unknown [Medicago truncatula]	0.966	0.950	0.451	1e-30
358249340	183	uncharacterized protein LOC100782877 [Gl	0.944	0.928	0.441	3e-28
326490766	223	predicted protein [Hordeum vulgare subsp	0.65	0.524	0.478	3e-27
388503786	187	unknown [Lotus japonicus]	0.938	0.903	0.421	4e-27
297796087	166	hypothetical protein ARALYDRAFT_495341 [	0.922	1.0	0.418	1e-25

>gi|255545166|ref|XP_002513644.1| conserved hypothetical protein [Ricinus communis] gi|223547552|gb|EEF49047.1| conserved hypothetical protein [Ricinus communis]

 Score =  174 bits (442), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 93/184 (50%), Positives = 130/184 (70%), Gaps = 7/184 (3%)

Query: 1   MRTLLSSQNPLLLFQKPS-VWNLRSSFTHPTTQQSLTSHPTTSWKLHANAKGFGARNTSP 59
           M  L+SSQ   L   KPS  W  ++   HPT  +S  ++P+T  +L+ANAKGF +R   P
Sbjct: 1   MNALVSSQRSPLYLTKPSPQWKSKTPSHHPTIFRS-QNNPSTRSRLNANAKGFTSR--KP 57

Query: 60  PASLNKSASDDE---NNNNNNSDEDHLPQVVLERIIVRILVSVGVPLATGIASLHFFGVV 116
           P  + ++  D +   +N +N SD++ LP+ V+ R+I RILVSVGVP+A G+A L FFG V
Sbjct: 58  PHMIKENTLDIKTTTSNEHNGSDDEELPKEVVNRVIKRILVSVGVPMALGLAFLKFFGSV 117

Query: 117 KEKQLFDLPLWIPLVTTFLTFGLSAVGIAYGSLSSSWDAEKQGSLLGFEEAKQNWVEIWN 176
           +E+ ++D+P+WI   TTFLTFG SA+GIAYG+LS+S D  K+GSLLGFEE ++NWVE+W 
Sbjct: 118 REQGIWDVPVWIVFATTFLTFGTSALGIAYGALSASLDPNKKGSLLGFEEVQENWVEMWK 177

Query: 177 EDDG 180
           E+DG
Sbjct: 178 EEDG 181

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225464604|ref|XP_002274943.1| PREDICTED: uncharacterized LOC100266405 [Vitis vinifera] gi|302143781|emb|CBI22642.3| unnamed protein product [Vitis vinifera]

 Score =  169 bits (428), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 88/184 (47%), Positives = 117/184 (63%), Gaps = 12/184 (6%)

Query: 1   MRTLLSSQNPLLLFQKPSVWNLRSSFTHPTTQQSLTSHPTTSWKLHANAKGFGARNTSPP 60
           M+ L+  Q P     KPS WN R+    P   + L   P T WKLHA AKGFG    +P 
Sbjct: 1   MKILVCLQQPNPHITKPSPWNPRAP--TPIATKDLNLRPRT-WKLHAEAKGFG---VAPG 54

Query: 61  ASLNKSASDDENNNNNNSDE------DHLPQVVLERIIVRILVSVGVPLATGIASLHFFG 114
             L K  +  E     NS        + +PQVV +R+IVRIL  VG P+  G+A L+ FG
Sbjct: 55  TILEKKTAQKETVPRKNSGNGDDDDDEKIPQVVFDRMIVRILFFVGAPMGIGVALLNLFG 114

Query: 115 VVKEKQLFDLPLWIPLVTTFLTFGLSAVGIAYGSLSSSWDAEKQGSLLGFEEAKQNWVEI 174
            VK++ L+D+P+W+P +TT + FG SA+GIAYG+LS+SWDAEK+GSLLG EEA+QNWV++
Sbjct: 115 AVKDQHLWDVPVWLPFLTTLIAFGASALGIAYGTLSTSWDAEKKGSLLGLEEAQQNWVDV 174

Query: 175 WNED 178
           W E+
Sbjct: 175 WKEE 178

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224079762|ref|XP_002305939.1| predicted protein [Populus trichocarpa] gi|118488155|gb|ABK95897.1| unknown [Populus trichocarpa] gi|222848903|gb|EEE86450.1| predicted protein [Populus trichocarpa]

 Score =  157 bits (396), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 77/179 (43%), Positives = 114/179 (63%), Gaps = 4/179 (2%)

Query: 1   MRTLLSSQNPLLLFQKPSVWNLRSSFTHPTTQQSLTSHPTTSWKLHANAKGFGARNTSPP 60
           M TL+ SQ   L     S W   +    PT+ Q   ++P  +WK+ A+AKGFG    S P
Sbjct: 1   MNTLVCSQKSPLYLANSSPWKPMAPSILPTSIQKTLNNPPATWKVQASAKGFG----SAP 56

Query: 61  ASLNKSASDDENNNNNNSDEDHLPQVVLERIIVRILVSVGVPLATGIASLHFFGVVKEKQ 120
            S+ +S+    + N NN+D++ +P+ VL RII R+LVSVG P+A   AS++  G+V E+ 
Sbjct: 57  PSIQESSIKKTSKNTNNNDDEEIPEEVLYRIIKRVLVSVGAPMALAFASMNVIGLVMEQH 116

Query: 121 LFDLPLWIPLVTTFLTFGLSAVGIAYGSLSSSWDAEKQGSLLGFEEAKQNWVEIWNEDD 179
           ++++P W   +T FLT G S  GIAYG+LS+S D  ++GS LGFE+ ++NWVE+W E+D
Sbjct: 117 IWNVPKWFMFLTLFLTLGASVCGIAYGALSTSMDPNEKGSFLGFEQVQKNWVEMWKEED 175

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449465705|ref|XP_004150568.1| PREDICTED: uncharacterized protein PAM68-like [Cucumis sativus] gi|449525666|ref|XP_004169837.1| PREDICTED: uncharacterized protein PAM68-like [Cucumis sativus]

 Score =  155 bits (393), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 84/182 (46%), Positives = 116/182 (63%), Gaps = 9/182 (4%)

Query: 1   MRTLLSSQNPLLLFQKPSVWNLRS-SFTHPTTQQSLTSH-PTTSW-KLHANAKGFGARNT 57
           M++L  S    LL   P  WN R+    H T   +LT+  PT S  ++  NAKGF     
Sbjct: 1   MKSLACSFPQALLLSNPPPWNQRTLIINHSTITNNLTNFTPTLSRGQVQVNAKGF---TN 57

Query: 58  SPPASLNKSASDDENNNNNNSDEDHLPQVVLERIIVRILVSVGVPLATGIASLHFFGVVK 117
           SP  + N+  +     NNN  D+D +P+ V  RII RIL  VG+P+A G+  L  F  +K
Sbjct: 58  SPRTAKNRETTAQ---NNNEDDDDEIPEAVYSRIITRILAFVGIPMAFGVTLLKIFQAIK 114

Query: 118 EKQLFDLPLWIPLVTTFLTFGLSAVGIAYGSLSSSWDAEKQGSLLGFEEAKQNWVEIWNE 177
           E+ L+D+P+W+P  TTFLTFG S +GIAYG+LS+S D EK+GS+LG+EEA++NWVE+W E
Sbjct: 115 EQNLWDVPIWVPFFTTFLTFGASTMGIAYGTLSTSLDPEKKGSVLGWEEAQKNWVEMWKE 174

Query: 178 DD 179
           +D
Sbjct: 175 ED 176

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147787208|emb|CAN77998.1| hypothetical protein VITISV_002983 [Vitis vinifera]

 Score =  144 bits (362), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 76/168 (45%), Positives = 101/168 (60%), Gaps = 13/168 (7%)

Query: 1   MRTLLSSQNPLLLFQKPSVWNLRSSFTHPTTQQSLTSHPTTSWKLHANAKGFGARNTSPP 60
           M+ L+  Q P     KPS WN R+    P   + L   P T WKLHA AKGFG    +P 
Sbjct: 1   MKILVCLQQPNPHITKPSPWNPRAP--TPIATKDLNLRPRT-WKLHAEAKGFG---VAPG 54

Query: 61  ASLNKSASDDENNNNNNSDE-------DHLPQVVLERIIVRILVSVGVPLATGIASLHFF 113
             L K  +  E     NS         + +PQVV +R+IVRIL  VG P+  G+A L+ F
Sbjct: 55  TILEKKTAQKETVPRKNSGNGDDDDDDEKIPQVVFDRMIVRILFFVGAPMGIGVALLNLF 114

Query: 114 GVVKEKQLFDLPLWIPLVTTFLTFGLSAVGIAYGSLSSSWDAEKQGSL 161
           G VK++ L+D+P+W+P +TT + FG SA+GIAYG+LS+SWDAEK+G L
Sbjct: 115 GAVKDQHLWDVPVWLPFLTTLIAFGASALGIAYGTLSTSWDAEKKGVL 162

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388491308|gb|AFK33720.1| unknown [Medicago truncatula]

 Score =  138 bits (347), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 83/184 (45%), Positives = 124/184 (67%), Gaps = 10/184 (5%)

Query: 1   MRTLLSSQNPLLL--FQKPSVWNLRSSFTHPTTQQSLTSHPTTSWKLHANAKGFGARNTS 58
           M+TL+ + NP+L    Q P     +  F+ P T + L ++  T+ K  A+AKGF   NT 
Sbjct: 1   MKTLVFASNPILQSSTQSPICKPQKFPFSQPNTSKQL-NYQFTTLKPQASAKGFS--NTR 57

Query: 59  PPASLNKSASDD---ENNNNNNSDEDHLPQVVLERIIVRILVSVGVPLATGIASLHFFGV 115
           PP++ NK A DD   + N N+ +D+D +P+ V+ RII RIL S  VP+A G++ LH +G 
Sbjct: 58  PPST-NK-AKDDVPIKKNPNDKNDDDDIPKEVMYRIIGRILFSTLVPMALGLSFLHLYGE 115

Query: 116 VKEKQLFDLPLWIPLVTTFLTFGLSAVGIAYGSLSSSWDAEKQGSLLGFEEAKQNWVEIW 175
           +K++ +F+ PLW+P VTT + FG S +GIAYG LS+S DAE++GSLLGFEE ++NW E+W
Sbjct: 116 LKDRHIFNAPLWMPFVTTLVFFGASGLGIAYGVLSTSLDAEREGSLLGFEEVEKNWDEMW 175

Query: 176 NEDD 179
            +++
Sbjct: 176 QQEN 179

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358249340|ref|NP_001239781.1| uncharacterized protein LOC100782877 [Glycine max] gi|255638580|gb|ACU19597.1| unknown [Glycine max]

 Score =  130 bits (326), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 83/188 (44%), Positives = 113/188 (60%), Gaps = 18/188 (9%)

Query: 1   MRTLLSSQNPLLLFQKPSVW--NLRSSFTHPTTQQSLTSHPTTSWKLHANAKGFGARNTS 58
           M+TL+ + N      K S W  N ++   HPT +    ++P T+ K  A+AKGF +  T 
Sbjct: 1   MKTLICAPNAAFNLSKLSPWKPNFQAYHHHPTHK---LNYPFTTLKPRASAKGFSS--TG 55

Query: 59  PPASLNKSASDDENNNNNNSDED-------HLPQVVLERIIVRILVSVGVPLATGIASLH 111
           PP      ASD+ N                 LPQ V+ R+I RIL SVGVP+  G+A L 
Sbjct: 56  PPTV----ASDNANTTKKPMRRKNNDDDDDELPQEVMYRLIGRILFSVGVPMGLGLALLG 111

Query: 112 FFGVVKEKQLFDLPLWIPLVTTFLTFGLSAVGIAYGSLSSSWDAEKQGSLLGFEEAKQNW 171
            FG +KEK ++D PLW+P +TT LTFG S++GIAYG+LS+S DAEK+GS LG E+ ++NW
Sbjct: 112 LFGELKEKHVWDAPLWLPFLTTLLTFGASSLGIAYGALSTSLDAEKEGSFLGVEQLQKNW 171

Query: 172 VEIWNEDD 179
           VE+W E  
Sbjct: 172 VEMWQEKQ 179

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326490766|dbj|BAJ90050.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  127 bits (318), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 56/117 (47%), Positives = 84/117 (71%)

Query: 62  SLNKSASDDENNNNNNSDEDHLPQVVLERIIVRILVSVGVPLATGIASLHFFGVVKEKQL 121
           S  ++A ++E  +     +D LPQVV +RI+ RIL +VGVP+A+G+A L+ +  +K    
Sbjct: 101 SFVEAAREEEQEDGGGRGDDELPQVVFDRILRRILFTVGVPMASGVALLNVYDALKRGGG 160

Query: 122 FDLPLWIPLVTTFLTFGLSAVGIAYGSLSSSWDAEKQGSLLGFEEAKQNWVEIWNED 178
            ++P W+ L+T  L+FG SA+GIAYG+LS+SWD EK+GSLLG +EA+ NW E+W E+
Sbjct: 161 AEVPSWVQLLTILLSFGTSALGIAYGTLSASWDPEKEGSLLGVDEARTNWPELWKEE 217

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388503786|gb|AFK39959.1| unknown [Lotus japonicus]

 Score =  126 bits (316), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 73/173 (42%), Positives = 106/173 (61%), Gaps = 4/173 (2%)

Query: 1   MRTLLSSQNPLLLFQKPSVWNLRSSFTHP-TTQQSLTSHPTTSWKL-HANAKGFGARNTS 58
           M++L+ + +P L     S W  +    HP T ++    +P T+ K   ANAKGF  R ++
Sbjct: 1   MKSLVCASHPTLYLPNYSSWKSKFRAFHPITAEKQPNYYPLTTPKPPRANAKGFSNRPST 60

Query: 59  PPASLNKSASDDENNNNNNSDEDHLPQVVLERIIVRILVSVGVPLATGIASLHFFGVVKE 118
                +   S +     N  +++ LP+VVL RII RIL SVGVPL  G+A L  +G +K+
Sbjct: 61  --TETDIVPSKNRRRGVNEEEDEELPRVVLYRIIGRILFSVGVPLVLGLALLDLYGELKD 118

Query: 119 KQLFDLPLWIPLVTTFLTFGLSAVGIAYGSLSSSWDAEKQGSLLGFEEAKQNW 171
           + ++D PLWIP  TT LTFG S +GIAYG+LS+S DAE++G+ LG  E ++NW
Sbjct: 119 RGIWDAPLWIPFTTTLLTFGASTLGIAYGTLSASLDAEREGTFLGLNEVQRNW 171

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297796087|ref|XP_002865928.1| hypothetical protein ARALYDRAFT_495341 [Arabidopsis lyrata subsp. lyrata] gi|297311763|gb|EFH42187.1| hypothetical protein ARALYDRAFT_495341 [Arabidopsis lyrata subsp. lyrata]

 Score =  121 bits (303), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 74/177 (41%), Positives = 106/177 (59%), Gaps = 11/177 (6%)

Query: 1   MRTLLSSQNPLLLFQKPSVWNLRSSFTHPTTQQSLTSHPTTSWKLHANAKGFGARNTSPP 60
           MR LL S + LL     S   L++   +P T     + P    KLHA  KGF +      
Sbjct: 1   MRALLCSHH-LLPLSSLSRTTLKTELQNPKTLIP-NNKPRWESKLHAGPKGFQS------ 52

Query: 61  ASLNKSASDDENNNNNNSDEDHLPQVVLERIIVRILVSVGVPLATGIASLHFFGVVKEKQ 120
               KS+ +    + +  D+  +PQ V ER++ RI+VSVG PL  G+A L    V+K+++
Sbjct: 53  ---TKSSENPGRPDPDQEDDPPIPQEVFERMMGRIVVSVGTPLGLGVAILKILEVLKDRK 109

Query: 121 LFDLPLWIPLVTTFLTFGLSAVGIAYGSLSSSWDAEKQGSLLGFEEAKQNWVEIWNE 177
           ++D+PLW+P +TT +TFG SA+GIAYGSLS++ D  K  SL G +EAK+NWVE+W E
Sbjct: 110 VWDVPLWVPFLTTLVTFGSSALGIAYGSLSTNLDPTKTNSLFGLKEAKENWVEMWKE 166

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	180
TAIR|locus:2149644	168	AT5G52780 "AT5G52780" [Arabido	0.922	0.988	0.368	2.1e-22
TAIR|locus:1006589876	214	PAM68 "AT4G19100" [Arabidopsis	0.422	0.355	0.434	3.3e-15

TAIR|locus:2149644 AT5G52780 "AT5G52780" [Arabidopsis thaliana (taxid:3702)]

 Score = 260 (96.6 bits), Expect = 2.1e-22, P = 2.1e-22
 Identities = 66/179 (36%), Positives = 90/179 (50%)

Query:     1 MRTLLSSQNPLLLFQKPSVWNLRSSFTHPTTQQSLTSHPTTSWKLHANAKGFGARNTSP- 59
             MR LL S   LL     S   +++   +P T     + P    KLHA  KGF +  TS  
Sbjct:     1 MRALLCSHR-LLPLSSLSRTTVKTKSHNPKTLYP-NNKPRWESKLHAGPKGFQSSRTSEK 58

Query:    60 PASLNKSAXXXXXXXXXXXXXXHLPQXXXXXXXXXXXXXXGVPLATGIASLHFFGVVKEK 119
             P   +                  +PQ              G PL  G+A L    V+K++
Sbjct:    59 PGRPDPDPEDDPP----------IPQEVFERMMGRIVVSVGTPLGLGVAILKVLEVLKDR 108

Query:   120 QLFDLPLWIPLVTTFLTFGLSAVGIAYGSLSSSWDAEKQGSLLGFEEAKQNWVEIWNED 178
              ++D+PLW+P +TT +TFG SA+GIAYGSLS++ D  K  SL G +EAK+NWVE+W ED
Sbjct:   109 NVWDVPLWVPYLTTLVTFGSSALGIAYGSLSTNLDPAKTNSLFGLKEAKENWVEMWKED 167

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0010155 "regulation of proton transport" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0046777 "protein autophosphorylation" evidence=RCA

TAIR|locus:1006589876 PAM68 "AT4G19100" [Arabidopsis thaliana (taxid:3702)]

 Score = 192 (72.6 bits), Expect = 3.3e-15, P = 3.3e-15
 Identities = 33/76 (43%), Positives = 49/76 (64%)

Query:   100 GVPLATGIASLHFFGVVKEKQLFDLPLWIPLVTTFLTFGLSAVGIAYGSLSSSWDAEKQG 159
             G+PL  G+    FF  +K     D+P W+P + +F+ FG +  G++YG +SSSWD  ++G
Sbjct:   129 GLPLFIGLLFFPFFYYLKVGLKVDVPTWVPFIVSFVFFGTALAGVSYGIVSSSWDPLREG 188

Query:   160 SLLGFEEAKQNWVEIW 175
             SLLG+ EAK+NW   W
Sbjct:   189 SLLGWNEAKKNWPVFW 204


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.130   0.406    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      180       152   0.00073  105 3  11 22  0.37    32
                                                     30  0.40    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  591 (63 KB)
  Total size of DFA:  159 KB (2093 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  12.13u 0.08s 12.21t   Elapsed:  00:00:01
  Total cpu time:  12.13u 0.08s 12.21t   Elapsed:  00:00:01
  Start:  Fri May 10 15:37:32 2013   End:  Fri May 10 15:37:33 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=ISS

GO:0009507 "chloroplast" evidence=IDA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0015979 "photosynthesis" evidence=RCA

GO:0016556 "mRNA modification" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LTD9	Y5278_ARATH	No assigned EC number	0.4078	0.9333	1.0	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00037743001	SubName- Full=Chromosome undetermined scaffold_91, whole genome shotgun sequence; (178 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00023910001	SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (216 aa)			•	•					0.627
	GSVIVG00037015001	SubName- Full=Chromosome chr1 scaffold_84, whole genome shotgun sequence; (198 aa)			•	•					0.622
	GSVIVG00023239001	SubName- Full=Chromosome chr8 scaffold_29, whole genome shotgun sequence; (219 aa)			•	•					0.620
	GSVIVG00028499001	RecName- Full=Photosystem II reaction center psb28 protein; (179 aa)			•	•					0.605
	PsbP2	SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (238 aa)			•	•					0.595
	GSVIVG00028771001	SubName- Full=Chromosome chr13 scaffold_45, whole genome shotgun sequence; (378 aa)			•	•					0.595
	GSVIVG00018549001	SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (235 aa)			•	•					0.592
	GSVIVG00037960001	SubName- Full=Chromosome chr14 scaffold_9, whole genome shotgun sequence; (267 aa)			•	•					0.579
	GSVIVG00001938001	SubName- Full=Chromosome chr5 scaffold_124, whole genome shotgun sequence; (229 aa)			•	•					0.574
	GSVIVG00005655001	SubName- Full=Putative uncharacterized protein (Chromosome undetermined scaffold_155, whole gen [...] (254 aa)			•	•					0.566

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	180
pfam11947	149	pfam11947, DUF3464, Protein of unknown function (D	5e-35

>gnl|CDD|204792 pfam11947, DUF3464, Protein of unknown function (DUF3464)

 Score =  119 bits (301), Expect = 5e-35
 Identities = 39/124 (31%), Positives = 64/124 (51%)

Query: 53  GARNTSPPASLNKSASDDENNNNNNSDEDHLPQVVLERIIVRILVSVGVPLATGIASLHF 112
           G +     A         +  +   + E  +P+VV  R+  R+    G+P A G+A    
Sbjct: 19  GVKALRKAAVAKSKDKQKKPKSKRAASESGIPKVVSNRMARRVAFFSGIPTALGMAVFVV 78

Query: 113 FGVVKEKQLFDLPLWIPLVTTFLTFGLSAVGIAYGSLSSSWDAEKQGSLLGFEEAKQNWV 172
             ++  + + D+P W+ L+ +   FGL  +G++YG LS+SWD E+ GSLLG+EE K NW 
Sbjct: 79  SYLLVSRGIIDVPPWVTLLVSLGFFGLGLLGLSYGILSASWDPERPGSLLGWEEFKPNWG 138

Query: 173 EIWN 176
            +  
Sbjct: 139 RMRA 142

This family of proteins are functionally uncharacterized. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length. Length = 149

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	180
PF11947	153	DUF3464: Protein of unknown function (DUF3464); In	100.0

>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised

Probab=100.00  E-value=2.1e-52  Score=338.03  Aligned_cols=107  Identities=41%  Similarity=0.850  Sum_probs=102.4

Q ss_pred             ccCCCCCCCCCCccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhcccccCccHHHHHHHHHHHHHhhhhhhhcccc
Q 030244           71 ENNNNNNSDEDHLPQVVLERIIVRILVSVGVPLATGIASLHFFGVVKEKQLFDLPLWIPLVTTFLTFGLSAVGIAYGSLS  150 (180)
Q Consensus        71 ~~~~~~~~~~~~IPevVs~RM~rRm~~f~GiP~~lG~~~f~~~Y~L~~~~~~dvP~wv~~l~S~~~FglglLGiSYGiLS  150 (180)
                      .+++..++++++|||+|+|||+|||++|||||+++||++|++||+|++++++|||+|+++++|++|||+|||||||||||
T Consensus        41 ~~~~~~~~~~~~IP~~Vs~RM~rRm~~~~GiP~~lG~~~f~~~y~l~~~~~~dvP~~~~~~~S~~~Fg~gllGisYGilS  120 (153)
T PF11947_consen   41 KPQEKRDEDDSAIPEVVSNRMLRRMAVFVGIPTALGVAVFVVFYYLKSRQIVDVPPWAVLLVSLVFFGLGLLGISYGILS  120 (153)
T ss_pred             cccccccccccccCHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHhccccccCchHHHHHHHHHHHHHHHhhhhhhcc
Confidence            34445788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCcCCCCcccchHHHhhhHhhhccc
Q 030244          151 SSWDAEKQGSLLGFEEAKQNWVEIWNE  177 (180)
Q Consensus       151 ASWD~~r~GSlLG~eE~~~N~~rmw~~  177 (180)
                      |||||+|+||+||||||++||+|||++
T Consensus       121 aSWD~~r~GSllG~~e~~~N~~r~~~a  147 (153)
T PF11947_consen  121 ASWDPEREGSLLGWEEFKRNWGRMWEA  147 (153)
T ss_pred             cccCCCCCCCcccHHHHHHhHHHHHHH
Confidence            999999999999999999999999865

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00