Citrus Sinensis ID: 030301

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------18
Protein Sequence
MTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDAFSDGGEAEEFEEVEKKLDADFKANAGATKEGSKADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSPVKS
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHcccccEEHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHccccEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
MTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLwdafsdggeaeEFEEVEKKLDADFkanagatkegskaddeLKKQRRPFLLQFFSPIFLKAFSITffgewgdksqlatiglaadenpfgVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQsflspvks
Flexible Loop (DISEMBL)
MTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDAFSDGGEAEEFEEVEKKLDAdfkanagatkegskaddelKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIqsflspvks
Low Complexity Region (SEG)
MTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDAFSDGGeaeefeeveKKLDADFKANAGATKEGSKADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSPVKS
Disordered region (IsUnstruct)
**ILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDAFSD****************************************PFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFL*****
Disordered Region (DISOPRED)
MTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDAF********************************************LLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSPVKS
Disordered Region (DISEMBL)
MTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDAFSDGGEAEEFEEVEKKLDADFKANA************LKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSPVKS
Disordered Region (DISPRO)
MTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDAFSDGG************************************RRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSPV**
Transmembrane Helix (TMHMM)
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDAFSDGGEAEEFEEVEKKLDADFKANAGATKEGSKADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSPVKS
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	179	2.2.26 [Sep-21-2011]
Q9C6M1	230	GDT1-like protein 4 OS=Ar	yes	no	1.0	0.778	0.772	7e-71
Q9SX28	228	GDT1-like protein 5 OS=Ar	no	no	0.994	0.780	0.759	3e-69
B9G125	232	GDT1-like protein 5 OS=Or	yes	no	0.977	0.754	0.731	5e-67
Q9HC07	324	Transmembrane protein 165	yes	no	0.944	0.521	0.414	2e-29
Q2R4J1	279	GDT1-like protein 3 OS=Or	no	no	0.910	0.584	0.414	6e-29
A2ZE50	279	GDT1-like protein 3 OS=Or	N/A	no	0.910	0.584	0.414	6e-29
Q93Y38	293	GDT1-like protein 3 OS=Ar	no	no	0.899	0.549	0.413	2e-28
Q4V899	323	Transmembrane protein 165	yes	no	0.938	0.520	0.408	2e-28
P52875	323	Transmembrane protein 165	yes	no	0.938	0.520	0.408	3e-28
Q10320	287	GDT1-like protein C17G8.0	yes	no	0.966	0.602	0.389	1e-27

>sp|Q9C6M1|GDT14_ARATH GDT1-like protein 4 OS=Arabidopsis thaliana GN=At1g25520 PE=2 SV=1

 Score =  266 bits (679), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 139/180 (77%), Positives = 156/180 (86%), Gaps = 1/180 (0%)

Query: 1   MTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDAFSDGGE-AEEFEEVEKKLDA 59
           MTILSA +GW APNLISRK THHITT+LFFGFGLWSLWD F +GG  +EE  EVE +LDA
Sbjct: 51  MTILSATLGWAAPNLISRKWTHHITTLLFFGFGLWSLWDGFKEGGGGSEELAEVEAELDA 110

Query: 60  DFKANAGATKEGSKADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAA 119
           D KAN  + K+ SK +DE KKQ R FL QFFSPIFLKAFSI FFGEWGDKSQLATIGLAA
Sbjct: 111 DLKANGKSPKDSSKREDENKKQNRAFLTQFFSPIFLKAFSINFFGEWGDKSQLATIGLAA 170

Query: 120 DENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSPVKS 179
           DENPFGVVLGG++ Q LCTTAAVIGGKSLASQISE+IVALSGG+LFI+FGIQS+L+ V++
Sbjct: 171 DENPFGVVLGGVVAQFLCTTAAVIGGKSLASQISERIVALSGGMLFIIFGIQSYLTSVEA 230

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SX28|GDT15_ARATH GDT1-like protein 5 OS=Arabidopsis thaliana GN=At1g68650 PE=2 SV=1

 Score =  260 bits (665), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 136/179 (75%), Positives = 151/179 (84%), Gaps = 1/179 (0%)

Query: 1   MTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDAFSDGGEAEEFEEVEKKLDAD 60
           MTILSA +GW APNLISRK THHITT LFFGFGLWSLWD F +GG +EE  EVE +LD+D
Sbjct: 51  MTILSATLGWAAPNLISRKWTHHITTFLFFGFGLWSLWDGFKEGGGSEELAEVEAELDSD 110

Query: 61  FKANAGATKEGSKADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAAD 120
            K     +K  SK +DE KKQ+RPFL  FFSPIFLKAFSI FFGEWGDKSQLATIGLAAD
Sbjct: 111 LKKTNDQSKN-SKIEDEQKKQKRPFLTAFFSPIFLKAFSINFFGEWGDKSQLATIGLAAD 169

Query: 121 ENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSPVKS 179
           ENP GVVLGGI+ Q LCTTAAV+GGKSLASQISE+IVALSGG+LFI+FGIQS L+PV +
Sbjct: 170 ENPLGVVLGGIVAQTLCTTAAVLGGKSLASQISERIVALSGGMLFIIFGIQSLLTPVDA 228

Arabidopsis thaliana (taxid: 3702)

>sp|B9G125|GDT15_ORYSJ GDT1-like protein 5 OS=Oryza sativa subsp. japonica GN=Os08g0433100 PE=2 SV=1

 Score =  253 bits (646), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 128/175 (73%), Positives = 153/175 (87%)

Query: 1   MTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDAFSDGGEAEEFEEVEKKLDAD 60
           MT LS  +GWVAPNLISRK THH+TT+LFF FG+ SLW+ F + G++EE  EVE +LDA+
Sbjct: 52  MTALSVSLGWVAPNLISRKWTHHVTTLLFFVFGILSLWEGFKEDGDSEELAEVEAELDAN 111

Query: 61  FKANAGATKEGSKADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAAD 120
           FK+N   +K  SKA+D+ KKQ+RPF+LQFFSPIF+KAFSITFFGEWGDKSQ+ATIGLAAD
Sbjct: 112 FKSNKAESKSKSKANDDKKKQQRPFVLQFFSPIFIKAFSITFFGEWGDKSQIATIGLAAD 171

Query: 121 ENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLS 175
           ENPFGVVLGG++ QALCTTAAV+GGKSLASQISEK+V LS GVLF++FGI S+LS
Sbjct: 172 ENPFGVVLGGVLAQALCTTAAVMGGKSLASQISEKMVGLSSGVLFLLFGIMSYLS 226

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9HC07|TM165_HUMAN Transmembrane protein 165 OS=Homo sapiens GN=TMEM165 PE=1 SV=1

 Score =  128 bits (322), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 78/188 (41%), Positives = 112/188 (59%), Gaps = 19/188 (10%)

Query: 1   MTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDAF---SDGGEAEEFEEVE--- 54
           MT LS + G+ A  +I R  T++++TVLF  FG+  L +      D G+ EE EEV+   
Sbjct: 140 MTCLSVLFGY-ATTVIPRVYTYYVSTVLFAIFGIRMLREGLKMSPDEGQ-EELEEVQAEL 197

Query: 55  KKLDADFKAN-----AGATKEGSKADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDK 109
           KK D +F+        G  + G+      KK      L F SPIF++A ++TF  EWGD+
Sbjct: 198 KKKDEEFQRTKLLNGPGDVETGTSITVPQKK-----WLHFISPIFVQALTLTFLAEWGDR 252

Query: 110 SQLATIGLAADENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFG 169
           SQL TI LAA E+P+GV +GG +G  LCT  AVIGG+ +A +IS + V + GG++F+ F 
Sbjct: 253 SQLTTIVLAAREDPYGVAVGGTVGHCLCTGLAVIGGRMIAQKISVRTVTIIGGIVFLAFA 312

Query: 170 IQS-FLSP 176
             + F+SP
Sbjct: 313 FSALFISP 320

Homo sapiens (taxid: 9606)

>sp|Q2R4J1|GDT13_ORYSJ GDT1-like protein 3 OS=Oryza sativa subsp. japonica GN=Os11g0472500 PE=2 SV=1

 Score =  126 bits (317), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 73/176 (41%), Positives = 103/176 (58%), Gaps = 13/176 (7%)

Query: 1   MTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDAFSDGGEAEEFEEVEKKLDAD 60
           MT+LS  +G + PNLISRK T+   TVL+  FGL  L+ A+    +  + +E+E+  +  
Sbjct: 115 MTVLSTGLGRIVPNLISRKHTNSAATVLYLFFGLRLLYIAWKSDPKGSQKKEMEEVEEKL 174

Query: 61  FKANAGATKEGSKADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAAD 120
                             K   R F  +F +PIFL+AF +TF  EWGD+SQ+ATI LA  
Sbjct: 175 ESGQG-------------KSTLRRFFGRFCTPIFLEAFILTFLAEWGDRSQIATIALATH 221

Query: 121 ENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSP 176
           +N  GV +G  +G  +CT+ AVIGG  LAS+IS++ VA  GGVLF+ F + S+  P
Sbjct: 222 KNAIGVAVGASLGHTVCTSLAVIGGSMLASKISQRTVATIGGVLFLGFSVSSYFYP 277

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A2ZE50|GDT13_ORYSI GDT1-like protein 3 OS=Oryza sativa subsp. indica GN=OsI_36063 PE=3 SV=1

 Score =  126 bits (317), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 73/176 (41%), Positives = 103/176 (58%), Gaps = 13/176 (7%)

Query: 1   MTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDAFSDGGEAEEFEEVEKKLDAD 60
           MT+LS  +G + PNLISRK T+   TVL+  FGL  L+ A+    +  + +E+E+  +  
Sbjct: 115 MTVLSTGLGRIVPNLISRKHTNSAATVLYLFFGLRLLYIAWKSDPKGSQKKEMEEVEEKL 174

Query: 61  FKANAGATKEGSKADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAAD 120
                             K   R F  +F +PIFL+AF +TF  EWGD+SQ+ATI LA  
Sbjct: 175 ESGQG-------------KSTLRRFFGRFCTPIFLEAFILTFLAEWGDRSQIATIALATH 221

Query: 121 ENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSP 176
           +N  GV +G  +G  +CT+ AVIGG  LAS+IS++ VA  GGVLF+ F + S+  P
Sbjct: 222 KNAIGVAVGASLGHTVCTSLAVIGGSMLASKISQRTVATIGGVLFLGFSVSSYFYP 277

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q93Y38|GDT13_ARATH GDT1-like protein 3 OS=Arabidopsis thaliana GN=At5g36290 PE=2 SV=1

 Score =  125 bits (314), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 74/179 (41%), Positives = 103/179 (57%), Gaps = 18/179 (10%)

Query: 1   MTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDAFSDGGEAEEFEEVEKKLDAD 60
           MTILS  +G + PNLISRK T+   TVL+  FGL  L+ A+                  D
Sbjct: 128 MTILSTGLGRIVPNLISRKHTNSAATVLYAFFGLRLLYIAWRS---------------TD 172

Query: 61  FKANAGATKEGSKADDELKKQRRPF---LLQFFSPIFLKAFSITFFGEWGDKSQLATIGL 117
            K+N     E  +   E  + + PF     +F +PIFL++F +TF  EWGD+SQ+ATI L
Sbjct: 173 SKSNQKKEMEEVEEKLESGQGKTPFRRLFSRFCTPIFLESFILTFLAEWGDRSQIATIAL 232

Query: 118 AADENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSP 176
           A  +N  GV +G  IG  +CT+ AV+GG  LAS+IS++ VA  GG+LF+ F + S+  P
Sbjct: 233 ATHKNAIGVAIGASIGHTVCTSLAVVGGSMLASRISQRTVATVGGLLFLGFSVSSYFYP 291

Arabidopsis thaliana (taxid: 3702)

>sp|Q4V899|TM165_RAT Transmembrane protein 165 OS=Rattus norvegicus GN=Tmem165 PE=2 SV=1

 Score =  124 bits (312), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 76/186 (40%), Positives = 110/186 (59%), Gaps = 18/186 (9%)

Query: 2   TILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDAF---SDGGEAEEFEEVE---K 55
           T LS + G+ A  +I R  T++++T LF  FG+  L +      D G+ EE EEV+   K
Sbjct: 141 TCLSVLFGY-ATTVIPRVYTYYVSTALFAIFGIRMLREGLKMSPDEGQ-EELEEVQAELK 198

Query: 56  KLDADFKA----NAGATKEGSKADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQ 111
           K D +F+     N    + G+      KK      L F SPIF++A ++TF  EWGD+SQ
Sbjct: 199 KKDEEFQRTKLLNGPDVETGTSTAIPQKK-----WLHFISPIFVQALTLTFLAEWGDRSQ 253

Query: 112 LATIGLAADENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQ 171
           L TI LAA E+P+GV +GG +G  LCT  AVIGG+ +A +IS + V + GG++F+ F   
Sbjct: 254 LTTIVLAAREDPYGVAVGGTVGHCLCTGLAVIGGRMIAQKISVRTVTIIGGIVFLAFAFS 313

Query: 172 S-FLSP 176
           + F+SP
Sbjct: 314 ALFISP 319

Rattus norvegicus (taxid: 10116)

>sp|P52875|TM165_MOUSE Transmembrane protein 165 OS=Mus musculus GN=Tmem165 PE=2 SV=2

 Score =  124 bits (312), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 76/186 (40%), Positives = 110/186 (59%), Gaps = 18/186 (9%)

Query: 2   TILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDAF---SDGGEAEEFEEVE---K 55
           T LS + G+ A  +I R  T++++T LF  FG+  L +      D G+ EE EEV+   K
Sbjct: 141 TCLSVLFGY-ATTVIPRVYTYYVSTALFAIFGIRMLREGLKMSPDEGQ-EELEEVQAELK 198

Query: 56  KLDADFKA----NAGATKEGSKADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQ 111
           K D +F+     N    + G+      KK      L F SPIF++A ++TF  EWGD+SQ
Sbjct: 199 KKDEEFQRTKLLNGPDVETGTSTAIPQKK-----WLHFISPIFVQALTLTFLAEWGDRSQ 253

Query: 112 LATIGLAADENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQ 171
           L TI LAA E+P+GV +GG +G  LCT  AVIGG+ +A +IS + V + GG++F+ F   
Sbjct: 254 LTTIVLAAREDPYGVAVGGTVGHCLCTGLAVIGGRMIAQKISVRTVTIIGGIVFLAFAFS 313

Query: 172 S-FLSP 176
           + F+SP
Sbjct: 314 ALFISP 319

Mus musculus (taxid: 10090)

>sp|Q10320|YD68_SCHPO GDT1-like protein C17G8.08c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC17G8.08c PE=3 SV=1

 Score =  122 bits (307), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 74/190 (38%), Positives = 107/190 (56%), Gaps = 17/190 (8%)

Query: 1   MTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDA--FSDGGEA--EEFEEVEKK 56
           MT+L  ++G  AP L  RKLT  +  VLF  FG+  L +A    D  E+  +EF+ V  +
Sbjct: 93  MTLLGVLLGHAAPLLFPRKLTDILGGVLFVIFGIKMLMEAKEVMDSKESMSDEFQNVRNE 152

Query: 57  LDA----DFKANAGA---------TKEGSKADDELKKQRRPFLLQFFSPIFLKAFSITFF 103
           + A    D     GA         ++ G     +LK + R  +   FSP+F+KAF++TF 
Sbjct: 153 IAANGPIDQLLEEGAAPSHYTGHRSRSGHTLMSQLKSKGRNVMATLFSPLFIKAFALTFV 212

Query: 104 GEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGV 163
            EWGD+SQ+ATI +AA +N +GV +G  +G A CT  AVI GK ++++I    V   GG+
Sbjct: 213 SEWGDRSQIATIAMAASDNVYGVFMGANVGHACCTALAVISGKYISTKIKVHKVMFIGGI 272

Query: 164 LFIVFGIQSF 173
           LFI FG+  F
Sbjct: 273 LFIAFGLVYF 282

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	179
255576513	228	Transmembrane protein TPARL, putative [R	0.994	0.780	0.859	2e-78
449465635	230	PREDICTED: GDT1-like protein 4-like [Cuc	0.988	0.769	0.807	2e-77
449532304	200	PREDICTED: GDT1-like protein 4-like, par	0.988	0.885	0.807	6e-77
224108528	228	predicted membrane protein [Populus tric	0.994	0.780	0.842	1e-75
224127069	228	predicted membrane protein [Populus tric	0.994	0.780	0.848	2e-75
224101691	224	predicted membrane protein [Populus tric	0.994	0.794	0.848	2e-75
351725019	229	uncharacterized protein LOC100527455 [Gl	1.0	0.781	0.798	6e-75
356575520	229	PREDICTED: uncharacterized protein LOC10	1.0	0.781	0.798	7e-75
225423915	230	PREDICTED: GDT1-like protein 4 [Vitis vi	1.0	0.778	0.826	1e-73
357147867	232	PREDICTED: GDT1-like protein 5-like isof	0.977	0.754	0.771	2e-73

>gi|255576513|ref|XP_002529148.1| Transmembrane protein TPARL, putative [Ricinus communis] gi|223531427|gb|EEF33261.1| Transmembrane protein TPARL, putative [Ricinus communis]

 Score =  296 bits (759), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 153/178 (85%), Positives = 165/178 (92%)

Query: 1   MTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDAFSDGGEAEEFEEVEKKLDAD 60
           MTILSAVVGW APNL+SR  THHITT+LFFGFG+WSLWD F+D GEAEE  EVE KLDAD
Sbjct: 51  MTILSAVVGWAAPNLLSRTWTHHITTLLFFGFGIWSLWDGFTDKGEAEELAEVEAKLDAD 110

Query: 61  FKANAGATKEGSKADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAAD 120
           +KAN G TK+G+KADDELKKQRRPFL QFFSPI LKAFSITFFGEWGDKSQ+ATIGLAAD
Sbjct: 111 WKANKGTTKDGAKADDELKKQRRPFLSQFFSPILLKAFSITFFGEWGDKSQIATIGLAAD 170

Query: 121 ENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSPVK 178
           ENPFGVVLGGI+GQALCTTAAV+GGKSLASQISEKIVALSGGVLFI+FGIQSFLS V+
Sbjct: 171 ENPFGVVLGGIVGQALCTTAAVVGGKSLASQISEKIVALSGGVLFIIFGIQSFLSTVE 228

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449465635|ref|XP_004150533.1| PREDICTED: GDT1-like protein 4-like [Cucumis sativus]

 Score =  293 bits (749), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 143/177 (80%), Positives = 155/177 (87%)

Query: 1   MTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDAFSDGGEAEEFEEVEKKLDAD 60
           MT LS +VGW APNLISRK  HHITT+LF GFGLWSLWDAF D GE+EE  EVE KLDAD
Sbjct: 52  MTALSVLVGWAAPNLISRKWAHHITTLLFLGFGLWSLWDAFHDEGESEELAEVEAKLDAD 111

Query: 61  FKANAGATKEGSKADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAAD 120
           FKAN   +K+G+K DD++KK  R  LLQF SPI+LKAFSITFFGEWGDKSQLATIGLAAD
Sbjct: 112 FKANKKGSKDGNKDDDDVKKHNRSILLQFLSPIYLKAFSITFFGEWGDKSQLATIGLAAD 171

Query: 121 ENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSPV 177
           ENP GVVLGGI+GQALCTTAAV+GG+SLASQISEKIVALSGGVLFIVFGIQSFLS V
Sbjct: 172 ENPLGVVLGGILGQALCTTAAVLGGRSLASQISEKIVALSGGVLFIVFGIQSFLSTV 228

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449532304|ref|XP_004173122.1| PREDICTED: GDT1-like protein 4-like, partial [Cucumis sativus]

 Score =  291 bits (746), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 143/177 (80%), Positives = 155/177 (87%)

Query: 1   MTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDAFSDGGEAEEFEEVEKKLDAD 60
           MT LS +VGW APNLISRK  HHITT+LF GFGLWSLWDAF D GE+EE  EVE KLDAD
Sbjct: 22  MTALSVLVGWAAPNLISRKWAHHITTLLFLGFGLWSLWDAFHDEGESEELAEVEAKLDAD 81

Query: 61  FKANAGATKEGSKADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAAD 120
           FKAN   +K+G+K DD++KK  R  LLQF SPI+LKAFSITFFGEWGDKSQLATIGLAAD
Sbjct: 82  FKANKKGSKDGNKDDDDVKKHNRSILLQFLSPIYLKAFSITFFGEWGDKSQLATIGLAAD 141

Query: 121 ENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSPV 177
           ENP GVVLGGI+GQALCTTAAV+GG+SLASQISEKIVALSGGVLFIVFGIQSFLS V
Sbjct: 142 ENPLGVVLGGILGQALCTTAAVLGGRSLASQISEKIVALSGGVLFIVFGIQSFLSTV 198

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224108528|ref|XP_002314881.1| predicted membrane protein [Populus trichocarpa] gi|222863921|gb|EEF01052.1| predicted membrane protein [Populus trichocarpa]

 Score =  287 bits (735), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 150/178 (84%), Positives = 159/178 (89%)

Query: 1   MTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDAFSDGGEAEEFEEVEKKLDAD 60
           MTILSA+VGW APNLISR  THHITT+LFFGFG WSLWD F+D GEAEE  EVE KLDAD
Sbjct: 51  MTILSAIVGWAAPNLISRTWTHHITTILFFGFGFWSLWDGFNDKGEAEELAEVEAKLDAD 110

Query: 61  FKANAGATKEGSKADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAAD 120
           +KAN G TK GSK DDELKK+RRPFL Q FSPI LKAFSITFFGEWGDKSQ+ATIGLAAD
Sbjct: 111 WKANTGTTKGGSKDDDELKKRRRPFLSQLFSPILLKAFSITFFGEWGDKSQIATIGLAAD 170

Query: 121 ENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSPVK 178
           ENP GVVLGGI+GQALCTTAAV GGKSLASQISEKIVALSGGVLFI+FGIQSFLS V+
Sbjct: 171 ENPLGVVLGGIVGQALCTTAAVFGGKSLASQISEKIVALSGGVLFIIFGIQSFLSTVE 228

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127069|ref|XP_002329381.1| predicted membrane protein [Populus trichocarpa] gi|222870431|gb|EEF07562.1| predicted membrane protein [Populus trichocarpa]

 Score =  286 bits (732), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 151/178 (84%), Positives = 158/178 (88%)

Query: 1   MTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDAFSDGGEAEEFEEVEKKLDAD 60
           MTILSA VGW APNLISR  THHITT+LFFGFGLWSLWD F+D GEAEE  EVE KLDAD
Sbjct: 51  MTILSAAVGWAAPNLISRAWTHHITTILFFGFGLWSLWDGFNDKGEAEELAEVEAKLDAD 110

Query: 61  FKANAGATKEGSKADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAAD 120
           +KAN G  K GSK  DELKKQRR FL QFFSPI LKAFSITFFGEWGDKSQ+ATIGLAAD
Sbjct: 111 WKANTGTAKVGSKDSDELKKQRRTFLSQFFSPILLKAFSITFFGEWGDKSQIATIGLAAD 170

Query: 121 ENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSPVK 178
           ENPFGVV+GGI+GQALCTTAAVIGGKSLASQISEKI ALSGGVLFIVFGIQSFLS V+
Sbjct: 171 ENPFGVVIGGIVGQALCTTAAVIGGKSLASQISEKIAALSGGVLFIVFGIQSFLSTVE 228

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224101691|ref|XP_002312384.1| predicted membrane protein [Populus trichocarpa] gi|222852204|gb|EEE89751.1| predicted membrane protein [Populus trichocarpa]

 Score =  286 bits (732), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 151/178 (84%), Positives = 158/178 (88%)

Query: 1   MTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDAFSDGGEAEEFEEVEKKLDAD 60
           MTILSA VGW APNLISR  THHITT+LFFGFGLWSLWD F+D GEAEE  EVE KLDAD
Sbjct: 47  MTILSAAVGWAAPNLISRAWTHHITTILFFGFGLWSLWDGFNDKGEAEELAEVEAKLDAD 106

Query: 61  FKANAGATKEGSKADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAAD 120
           +KAN G  K GSK  DE KKQRR FL QFFSPI LKAFSITFFGEWGDKSQ+ATIGLAAD
Sbjct: 107 WKANTGTAKAGSKDSDEFKKQRRTFLSQFFSPILLKAFSITFFGEWGDKSQIATIGLAAD 166

Query: 121 ENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSPVK 178
           ENPFGVV+GGI+GQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLS V+
Sbjct: 167 ENPFGVVIGGIVGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSTVE 224

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351725019|ref|NP_001236310.1| uncharacterized protein LOC100527455 [Glycine max] gi|255632394|gb|ACU16547.1| unknown [Glycine max]

 Score =  285 bits (728), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 143/179 (79%), Positives = 156/179 (87%)

Query: 1   MTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDAFSDGGEAEEFEEVEKKLDAD 60
           MTIL A+VGW APNLISR  THHITT LF GFGLWSL DA  + G+AEE  EVE KLD D
Sbjct: 51  MTILPALVGWAAPNLISRTWTHHITTFLFLGFGLWSLKDAIFEQGDAEELAEVEAKLDKD 110

Query: 61  FKANAGATKEGSKADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAAD 120
           +KA+ GATK  +K DD  KK +R FL QFFSPIFL+AFSITFFGEWGDKSQLATIGLAAD
Sbjct: 111 WKASNGATKNSNKDDDATKKHKRSFLSQFFSPIFLQAFSITFFGEWGDKSQLATIGLAAD 170

Query: 121 ENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSPVKS 179
           ENPFGVVLGGI+GQALCT+AAV+GGKSLASQISEKIVALSGG+LFIVFGIQSFLSPV+S
Sbjct: 171 ENPFGVVLGGILGQALCTSAAVVGGKSLASQISEKIVALSGGILFIVFGIQSFLSPVES 229

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356575520|ref|XP_003555888.1| PREDICTED: uncharacterized protein LOC100527757 [Glycine max]

 Score =  285 bits (728), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 143/179 (79%), Positives = 155/179 (86%)

Query: 1   MTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDAFSDGGEAEEFEEVEKKLDAD 60
           MTILS +VGW APNLISR  THHITT LF GFGLWSL DA  + G+AEE  EVE KLD D
Sbjct: 51  MTILSVLVGWAAPNLISRTWTHHITTFLFLGFGLWSLKDAIFEEGDAEELAEVEAKLDKD 110

Query: 61  FKANAGATKEGSKADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAAD 120
           +KA+ GATK  +K DD  KK +R FL QFFSPIFL+AFSITFFGEWGDKSQLATIGLAAD
Sbjct: 111 WKASNGATKNSNKDDDATKKHKRSFLSQFFSPIFLQAFSITFFGEWGDKSQLATIGLAAD 170

Query: 121 ENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSPVKS 179
           ENPFGVVLGGI+GQALCT AAV+GGKSLASQISEKIVALSGG+LFIVFGIQSFLSPV+S
Sbjct: 171 ENPFGVVLGGILGQALCTAAAVVGGKSLASQISEKIVALSGGILFIVFGIQSFLSPVES 229

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225423915|ref|XP_002281939.1| PREDICTED: GDT1-like protein 4 [Vitis vinifera] gi|297737851|emb|CBI27052.3| unnamed protein product [Vitis vinifera]

 Score =  281 bits (718), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 148/179 (82%), Positives = 157/179 (87%)

Query: 1   MTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDAFSDGGEAEEFEEVEKKLDAD 60
           MTI S VVGW APNL+SRK THHITT+LFFGFGLWSLWD F + GEAEE  EVE KL+AD
Sbjct: 52  MTIFSVVVGWAAPNLLSRKWTHHITTLLFFGFGLWSLWDGFKEDGEAEELAEVEAKLNAD 111

Query: 61  FKANAGATKEGSKADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAAD 120
           +K N  + K  SK DDELKKQRRP L+QFFSPIFLKAFSITFFGEWGDKSQLATIGLAAD
Sbjct: 112 WKTNTSSAKGDSKDDDELKKQRRPILMQFFSPIFLKAFSITFFGEWGDKSQLATIGLAAD 171

Query: 121 ENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSPVKS 179
           ENP GVVLGGIIGQALCTTAAV+GGKSLASQISEK VALSGGVLFIVFGIQS LS V+S
Sbjct: 172 ENPIGVVLGGIIGQALCTTAAVLGGKSLASQISEKFVALSGGVLFIVFGIQSLLSTVES 230

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357147867|ref|XP_003574521.1| PREDICTED: GDT1-like protein 5-like isoform 1 [Brachypodium distachyon]

 Score =  280 bits (716), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 135/175 (77%), Positives = 153/175 (87%)

Query: 1   MTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDAFSDGGEAEEFEEVEKKLDAD 60
           MT LSA +GWVAPNLISRK THH+TT+LFF FG+WSLW+ F + GE+EE  E+E KLDAD
Sbjct: 52  MTALSASLGWVAPNLISRKWTHHVTTLLFFVFGIWSLWEGFKEDGESEELAEMEAKLDAD 111

Query: 61  FKANAGATKEGSKADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAAD 120
           FK+N G  K  SKA D+ KKQRRPFL+QFFSPIFLKAFSITFFGEWGDKSQ+ATIGLAAD
Sbjct: 112 FKSNKGEQKNKSKATDDTKKQRRPFLMQFFSPIFLKAFSITFFGEWGDKSQIATIGLAAD 171

Query: 121 ENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLS 175
           ENPFGVV+GG+I QALCTTAAV+GGKSLASQISEK+V LS GVLF++FGI S LS
Sbjct: 172 ENPFGVVIGGVIAQALCTTAAVMGGKSLASQISEKMVELSSGVLFLLFGILSLLS 226

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	179
TAIR|locus:2031195	230	AT1G25520 [Arabidopsis thalian	1.0	0.778	0.744	3.5e-68
TAIR|locus:2026879	228	AT1G68650 "AT1G68650" [Arabido	0.983	0.771	0.740	2.8e-66
WB|WBGene00021847	297	Y54F10AL.1 [Caenorhabditis ele	0.983	0.592	0.410	2.4e-28
TAIR|locus:2183632	293	AT5G36290 "AT5G36290" [Arabido	0.916	0.559	0.409	6.4e-28
POMBASE|SPAC17G8.08c	287	SPAC17G8.08c "human TMEM165 ho	0.592	0.369	0.443	8.4e-28
ZFIN|ZDB-GENE-030131-3222	305	tmem165 "transmembrane protein	0.960	0.563	0.397	1.5e-26
UNIPROTKB|F1P1B3	254	TMEM165 "Uncharacterized prote	0.949	0.669	0.395	1.9e-26
UNIPROTKB|B4DHW1	261	TMEM165 "cDNA FLJ60544, highly	0.972	0.666	0.382	1.9e-26
UNIPROTKB|Q9HC07	324	TMEM165 "Transmembrane protein	0.972	0.537	0.382	1.9e-26
UNIPROTKB|F1PU63	325	TMEM165 "Uncharacterized prote	0.960	0.529	0.383	6.6e-26

TAIR|locus:2031195 AT1G25520 [Arabidopsis thaliana (taxid:3702)]

 Score = 692 (248.7 bits), Expect = 3.5e-68, P = 3.5e-68
 Identities = 134/180 (74%), Positives = 151/180 (83%)

Query:     1 MTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDAFSDGGXXXXXXXXXK-KLDA 59
             MTILSA +GW APNLISRK THHITT+LFFGFGLWSLWD F +GG         + +LDA
Sbjct:    51 MTILSATLGWAAPNLISRKWTHHITTLLFFGFGLWSLWDGFKEGGGGSEELAEVEAELDA 110

Query:    60 DFKANAGATKEGSKADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAA 119
             D KAN  + K+ SK +DE KKQ R FL QFFSPIFLKAFSI FFGEWGDKSQLATIGLAA
Sbjct:   111 DLKANGKSPKDSSKREDENKKQNRAFLTQFFSPIFLKAFSINFFGEWGDKSQLATIGLAA 170

Query:   120 DENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSPVKS 179
             DENPFGVVLGG++ Q LCTTAAVIGGKSLASQISE+IVALSGG+LFI+FGIQS+L+ V++
Sbjct:   171 DENPFGVVLGGVVAQFLCTTAAVIGGKSLASQISERIVALSGGMLFIIFGIQSYLTSVEA 230

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA

GO:0080167 "response to karrikin" evidence=IEP

TAIR|locus:2026879 AT1G68650 "AT1G68650" [Arabidopsis thaliana (taxid:3702)]

 Score = 674 (242.3 bits), Expect = 2.8e-66, P = 2.8e-66
 Identities = 131/177 (74%), Positives = 144/177 (81%)

Query:     1 MTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDAFSDGGXXXXXXXXXKKLDAD 60
             MTILSA +GW APNLISRK THHITT LFFGFGLWSLWD F +GG          +LD+D
Sbjct:    51 MTILSATLGWAAPNLISRKWTHHITTFLFFGFGLWSLWDGFKEGGGSEELAEVEAELDSD 110

Query:    61 FKANAGATKEGSKADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAAD 120
              K     +K  SK +DE KKQ+RPFL  FFSPIFLKAFSI FFGEWGDKSQLATIGLAAD
Sbjct:   111 LKKTNDQSKN-SKIEDEQKKQKRPFLTAFFSPIFLKAFSINFFGEWGDKSQLATIGLAAD 169

Query:   121 ENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSPV 177
             ENP GVVLGGI+ Q LCTTAAV+GGKSLASQISE+IVALSGG+LFI+FGIQS L+PV
Sbjct:   170 ENPLGVVLGGIVAQTLCTTAAVLGGKSLASQISERIVALSGGMLFIIFGIQSLLTPV 226

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA

WB|WBGene00021847 Y54F10AL.1 [Caenorhabditis elegans (taxid:6239)]

 Score = 316 (116.3 bits), Expect = 2.4e-28, P = 2.4e-28
 Identities = 76/185 (41%), Positives = 111/185 (60%)

Query:     1 MTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSL---WDAFSDGGXXXXXXXXXKKL 57
             MT+LSA +GW+   +I R +T++++T LF  FGL  L   W    + G         +  
Sbjct:   112 MTVLSACLGWIT-QVIPRAVTYYLSTALFALFGLKMLHEGWTMSPNEGQEGYEEAQAEVA 170

Query:    58 DADFKANAGATK--EGSKADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATI 115
               + + +AG  +  EG        + R+ FL  F S IF++AFS+TF  EWGD+SQL TI
Sbjct:   171 KREGELDAGKFEMLEGGGGVASQSETRKIFL--FTSRIFIEAFSLTFVAEWGDRSQLTTI 228

Query:   116 GLAADENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQS-FL 174
              L A EN  GV+ GGI+G ALCT  AVIGGK +A +IS + V L GGV+F++F + + F+
Sbjct:   229 ILGARENIAGVIGGGILGHALCTGIAVIGGKIVAQRISVRTVTLIGGVVFLLFALSALFI 288

Query:   175 SPVKS 179
             + ++S
Sbjct:   289 NDIES 293

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

TAIR|locus:2183632 AT5G36290 "AT5G36290" [Arabidopsis thaliana (taxid:3702)]

 Score = 312 (114.9 bits), Expect = 6.4e-28, P = 6.4e-28
 Identities = 72/176 (40%), Positives = 103/176 (58%)

Query:     1 MTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDAFSDGGXXXXXXXXXKKLDAD 60
             MTILS  +G + PNLISRK T+   TVL+  FGL  L+ A+             ++++  
Sbjct:   128 MTILSTGLGRIVPNLISRKHTNSAATVLYAFFGLRLLYIAWRSTDSKSNQKKEMEEVEEK 187

Query:    61 FKANAGATKEGSKADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAAD 120
              ++  G T             RR F  +F +PIFL++F +TF  EWGD+SQ+ATI LA  
Sbjct:   188 LESGQGKTPF-----------RRLFS-RFCTPIFLESFILTFLAEWGDRSQIATIALATH 235

Query:   121 ENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSP 176
             +N  GV +G  IG  +CT+ AV+GG  LAS+IS++ VA  GG+LF+ F + S+  P
Sbjct:   236 KNAIGVAIGASIGHTVCTSLAVVGGSMLASRISQRTVATVGGLLFLGFSVSSYFYP 291

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006007 "glucose catabolic process" evidence=RCA

GO:0030244 "cellulose biosynthetic process" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

POMBASE|SPAC17G8.08c SPAC17G8.08c "human TMEM165 homolog" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 252 (93.8 bits), Expect = 8.4e-28, Sum P(2) = 8.4e-28
 Identities = 47/106 (44%), Positives = 69/106 (65%)

Query:    68 TKEGSKADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVV 127
             ++ G     +LK + R  +   FSP+F+KAF++TF  EWGD+SQ+ATI +AA +N +GV 
Sbjct:   177 SRSGHTLMSQLKSKGRNVMATLFSPLFIKAFALTFVSEWGDRSQIATIAMAASDNVYGVF 236

Query:   128 LGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSF 173
             +G  +G A CT  AVI GK ++++I    V   GG+LFI FG+  F
Sbjct:   237 MGANVGHACCTALAVISGKYISTKIKVHKVMFIGGILFIAFGLVYF 282

GO:0003674 "molecular_function" evidence=ND

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0008150 "biological_process" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA

ZFIN|ZDB-GENE-030131-3222 tmem165 "transmembrane protein 165" [Danio rerio (taxid:7955)]

 Score = 299 (110.3 bits), Expect = 1.5e-26, P = 1.5e-26
 Identities = 74/186 (39%), Positives = 107/186 (57%)

Query:     1 MTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDAFS---DGGXXXXXXXXX--K 55
             MT LS + G+ A  +I R  T++I+T LF  FG+  L +      D G           K
Sbjct:   120 MTCLSVLFGY-ATTIIPRIYTYYISTALFAIFGVRMLREGLRMSPDEGQEELEEVQAEIK 178

Query:    56 KLDADFK----ANAGATKEGSKADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQ 111
             K D + +    AN     E   A + L +++ P L+   SPIF++A ++TF  EWGD+SQ
Sbjct:   179 KKDEELQRYKLANGAPDVEAGTAANMLPQRKWPSLI---SPIFIQALTLTFLAEWGDRSQ 235

Query:   112 LATIGLAADENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQ 171
             LATI LAA E+PFGV +GG +G  LCT  AVIGG+ +A +IS + V + GG++F+ F   
Sbjct:   236 LATIVLAAREDPFGVAVGGTLGHCLCTGLAVIGGRMVAQKISVRTVTIIGGIVFLAFAFS 295

Query:   172 S-FLSP 176
             + F+ P
Sbjct:   296 ALFIKP 301

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1P1B3 TMEM165 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 298 (110.0 bits), Expect = 1.9e-26, P = 1.9e-26
 Identities = 74/187 (39%), Positives = 105/187 (56%)

Query:     1 MTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDAFS---DGGXXXXXXXXX--K 55
             MT LS + G+ A  +I R  T++++T LF  FG+  L +      D G           K
Sbjct:    70 MTCLSVLFGY-ATTVIPRVYTYYVSTALFAIFGIRMLREGLKMSPDEGQEELEEVQAEIK 128

Query:    56 KLDADFKANA-----GATKEGSKADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKS 110
             K D + +        G  + GS A    KK      L F SPIF++AF++TF  EWGD+S
Sbjct:   129 KKDEELQRTKLLNGPGDVETGSTATIPQKKW-----LHFISPIFVQAFTLTFLAEWGDRS 183

Query:   111 QLATIGLAADENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGI 170
             QL TI LAA E+P+GV +GG +G  LCT  AVIGG+ +A +IS + V + GG++F+ F  
Sbjct:   184 QLTTIVLAAREDPYGVAVGGTVGHCLCTGLAVIGGRMIAQKISVRTVTIIGGIVFLAFAF 243

Query:   171 QS-FLSP 176
              + F+SP
Sbjct:   244 SALFISP 250

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|B4DHW1 TMEM165 "cDNA FLJ60544, highly similar to Transmembrane protein TPARL" [Homo sapiens (taxid:9606)]

 Score = 298 (110.0 bits), Expect = 1.9e-26, P = 1.9e-26
 Identities = 70/183 (38%), Positives = 105/183 (57%)

Query:     1 MTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDAFS---DGGXXXXXXXXX--K 55
             MT LS + G+ A  +I R  T++++TVLF  FG+  L +      D G           K
Sbjct:    77 MTCLSVLFGY-ATTVIPRVYTYYVSTVLFAIFGIRMLREGLKMSPDEGQEELEEVQAELK 135

Query:    56 KLDADFKANAGATKEGS-KADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLAT 114
             K D +F+        G  +    +   ++ +L  F SPIF++A ++TF  EWGD+SQL T
Sbjct:   136 KKDEEFQRTKLLNGPGDVETGTSITVPQKKWL-HFISPIFVQALTLTFLAEWGDRSQLTT 194

Query:   115 IGLAADENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQS-F 173
             I LAA E+P+GV +GG +G  LCT  AVIGG+ +A +IS + V + GG++F+ F   + F
Sbjct:   195 IVLAAREDPYGVAVGGTVGHCLCTGLAVIGGRMIAQKISVRTVTIIGGIVFLAFAFSALF 254

Query:   174 LSP 176
             +SP
Sbjct:   255 ISP 257

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q9HC07 TMEM165 "Transmembrane protein 165" [Homo sapiens (taxid:9606)]

 Score = 298 (110.0 bits), Expect = 1.9e-26, P = 1.9e-26
 Identities = 70/183 (38%), Positives = 105/183 (57%)

Query:     1 MTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDAFS---DGGXXXXXXXXX--K 55
             MT LS + G+ A  +I R  T++++TVLF  FG+  L +      D G           K
Sbjct:   140 MTCLSVLFGY-ATTVIPRVYTYYVSTVLFAIFGIRMLREGLKMSPDEGQEELEEVQAELK 198

Query:    56 KLDADFKANAGATKEGS-KADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLAT 114
             K D +F+        G  +    +   ++ +L  F SPIF++A ++TF  EWGD+SQL T
Sbjct:   199 KKDEEFQRTKLLNGPGDVETGTSITVPQKKWL-HFISPIFVQALTLTFLAEWGDRSQLTT 257

Query:   115 IGLAADENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQS-F 173
             I LAA E+P+GV +GG +G  LCT  AVIGG+ +A +IS + V + GG++F+ F   + F
Sbjct:   258 IVLAAREDPYGVAVGGTVGHCLCTGLAVIGGRMIAQKISVRTVTIIGGIVFLAFAFSALF 317

Query:   174 LSP 176
             +SP
Sbjct:   318 ISP 320

GO:0016021 "integral to membrane" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

UNIPROTKB|F1PU63 TMEM165 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 293 (108.2 bits), Expect = 6.6e-26, P = 6.6e-26
 Identities = 71/185 (38%), Positives = 105/185 (56%)

Query:     1 MTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDAFS---DGGXXXXXXXXX--K 55
             MT LS + G+ A  +I R  T++++T LF  FG+  L +      D G           K
Sbjct:   141 MTCLSVLFGY-ATTVIPRVYTYYVSTALFAIFGIRMLREGLKMSPDEGQEELEEVQAELK 199

Query:    56 KLDADFKANAGATKEG---SKADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQL 112
             K D +F+        G   + A   + ++R    L F SPIF++A ++TF  EWGD+SQL
Sbjct:   200 KKDEEFQRTKLLNGPGDVETGASTAIPQKR---WLHFISPIFVQALTLTFLAEWGDRSQL 256

Query:   113 ATIGLAADENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQS 172
              TI LAA E+P+GV +GG +G  LCT  AVIGG+ +A +IS + V + GG++F+ F   +
Sbjct:   257 TTIVLAAREDPYGVAVGGTVGHCLCTGLAVIGGRMIAQKISVRTVTIIGGIVFLAFAFSA 316

Query:   173 -FLSP 176
              F+SP
Sbjct:   317 LFISP 321

GO:0016020 "membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9C6M1	GDT14_ARATH	No assigned EC number	0.7722	1.0	0.7782	yes	no
B9G125	GDT15_ORYSJ	No assigned EC number	0.7314	0.9776	0.7543	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	179
COG2119	190	COG2119, COG2119, Predicted membrane protein [Func	5e-27
pfam01169	78	pfam01169, UPF0016, Uncharacterized protein family	2e-20
COG2119	190	COG2119, COG2119, Predicted membrane protein [Func	1e-05

>gnl|CDD|225030 COG2119, COG2119, Predicted membrane protein [Function unknown]

 Score =  100 bits (251), Expect = 5e-27
 Identities = 46/175 (26%), Positives = 74/175 (42%), Gaps = 39/175 (22%)

Query: 1   MTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDAFSDGGEAEEFEEVEKKLDAD 60
           M  L+ +VG  A +L+  +     + VLF  F +W L +                     
Sbjct: 47  MHALAVLVGHAAASLLPERPLAWASGVLFLAFAVWMLIED-------------------- 86

Query: 61  FKANAGATKEGSKADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAAD 120
                       K DDE  +   P        +F+  F   F  E GDK+Q+ATI LAAD
Sbjct: 87  ------------KEDDEEAQAASPRG------VFVTTFITFFLAELGDKTQIATIALAAD 128

Query: 121 EN-PFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFL 174
            + P+ V  G  +G  L +  AV+ GK +A ++ E+++     +LF++F +    
Sbjct: 129 YHSPWAVFAGTTLGMILASVLAVLLGKLIAGKLPERLLRFIAALLFLIFALVLLW 183

Length = 190

>gnl|CDD|216341 pfam01169, UPF0016, Uncharacterized protein family UPF0016

 Score = 80.2 bits (199), Expect = 2e-20
 Identities = 34/78 (43%), Positives = 48/78 (61%), Gaps = 2/78 (2%)

Query: 94  FLKAFSITFFGEWGDKSQLATIGLAA--DENPFGVVLGGIIGQALCTTAAVIGGKSLASQ 151
           FL +F + F  E GDK+QLATI LAA    +P+ V LG  +  AL T  AV+ G+ LA+ 
Sbjct: 1   FLTSFLLIFLAELGDKTQLATIALAARYSRSPWAVFLGATLALALATLLAVLLGRWLATL 60

Query: 152 ISEKIVALSGGVLFIVFG 169
           +  +++    GVLF+ FG
Sbjct: 61  LPPRVLHFVAGVLFLAFG 78

This family contains integral membrane proteins of unknown function. Most members of the family contain two copies of a region that contains an EXGD motif. Each of these regions contains three predicted transmembrane regions. Length = 78

>gnl|CDD|225030 COG2119, COG2119, Predicted membrane protein [Function unknown]

 Score = 43.1 bits (102), Expect = 1e-05
 Identities = 24/77 (31%), Positives = 37/77 (48%)

Query: 94  FLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAVIGGKSLASQIS 153
            L +  +    E GDK+QL  + LA     + V  G  I        AV+ G + AS + 
Sbjct: 4   LLVSLLMVALAEIGDKTQLIAMLLAMRYRRWPVFAGIAIALFAMHALAVLVGHAAASLLP 63

Query: 154 EKIVALSGGVLFIVFGI 170
           E+ +A + GVLF+ F +
Sbjct: 64  ERPLAWASGVLFLAFAV 80

Length = 190

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	179
KOG2881	294	consensus Predicted membrane protein [Function unk	100.0
COG2119	190	Predicted membrane protein [Function unknown]	100.0
PF01169	78	UPF0016: Uncharacterized protein family UPF0016; I	99.94
COG2119	190	Predicted membrane protein [Function unknown]	99.81
KOG2881	294	consensus Predicted membrane protein [Function unk	99.77
PRK11469	188	hypothetical protein; Provisional	98.59
TIGR02840	206	spore_YtaF putative sporulation protein YtaF. This	98.35
COG1971	190	Predicted membrane protein [Function unknown]	98.19
PF01169	78	UPF0016: Uncharacterized protein family UPF0016; I	97.68
PF01810	191	LysE: LysE type translocator; InterPro: IPR001123	97.54
COG4280	236	Predicted membrane protein [Function unknown]	97.42
COG0730	258	Predicted permeases [General function prediction o	95.66
PF01925	240	TauE: Sulfite exporter TauE/SafE; InterPro: IPR002	95.6
PRK10621	266	hypothetical protein; Provisional	95.53
COG4280	236	Predicted membrane protein [Function unknown]	95.17
TIGR02840	206	spore_YtaF putative sporulation protein YtaF. This	95.14
TIGR00949	185	2A76 The Resistance to Homoserine/Threonine (RhtB)	95.11
PF01914	203	MarC: MarC family integral membrane protein; Inter	94.75
PF03741	183	TerC: Integral membrane protein TerC family; Inter	94.65
PRK10995	221	inner membrane protein; Provisional	94.64
PF03596	191	Cad: Cadmium resistance transporter; InterPro: IPR	94.01
TIGR03718	302	R_switched_Alx integral membrane protein, TerC fam	93.93
TIGR03716	215	R_switched_YkoY integral membrane protein, YkoY fa	93.9
TIGR03717	176	R_switched_YjbE integral membrane protein, YjbE fa	93.31
COG4300	205	CadD Predicted permease, cadmium resistance protei	92.38
COG1280	208	RhtB Putative threonine efflux protein [Amino acid	92.02
PRK11469	188	hypothetical protein; Provisional	91.98
PRK10229	206	threonine efflux system; Provisional	91.77
PRK10019	279	nickel/cobalt efflux protein RcnA; Provisional	91.02
PRK10958	212	leucine export protein LeuE; Provisional	90.61
PRK11111	214	hypothetical protein; Provisional	90.35
TIGR00427	201	membrane protein, MarC family. MarC is a protein t	89.89
PRK09304	207	arginine exporter protein; Provisional	89.49
PF02659	67	DUF204: Domain of unknown function DUF; InterPro:	87.07
PRK10520	205	rhtB homoserine/homoserine lactone efflux protein;	86.89
PF03239	306	FTR1: Iron permease FTR1 family; InterPro: IPR0049	86.83
PRK00293	571	dipZ thiol:disulfide interchange protein precursor	84.75
PF03596	191	Cad: Cadmium resistance transporter; InterPro: IPR	82.81
PRK10739	197	putative antibiotic transporter; Provisional	82.45
COG2095	203	MarC Multiple antibiotic transporter [Intracellula	81.06
PRK10323	195	cysteine/O-acetylserine exporter; Provisional	80.72
PF02659	67	DUF204: Domain of unknown function DUF; InterPro:	80.18

>KOG2881 consensus Predicted membrane protein [Function unknown]

Probab=100.00  E-value=3.4e-47  Score=321.74  Aligned_cols=179  Identities=52%  Similarity=0.797  Sum_probs=157.9

Q ss_pred             ChhHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhc--CCCChhhHHHHHHhhhhhhhhccc--cccCCCCCch
Q 030301            1 MTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDAFS--DGGEAEEFEEVEKKLDADFKANAG--ATKEGSKADD   76 (179)
Q Consensus         1 MT~lsv~~G~~l~~~lp~~~~~~~aa~lF~~FG~~~L~~~~~--~~~~~ee~~E~~~~~~~~~~~~~~--~~~~~~~~~~   76 (179)
                      ||+||+++|+..|+++|+.|+++++++||++||+|||+|+++  +++.+||.||+|+|++.++.+.+.  +...+....+
T Consensus       112 MTiLS~~lG~aap~lipr~~T~~~~t~LF~iFGlkmL~eg~~~~~~~~~eE~eEVe~el~~~~~~~~~~~~~~~~~~~~~  191 (294)
T KOG2881|consen  112 MTILSVLLGWAAPNLIPRKYTYYLATALFLIFGLKMLKEGWEMSPSEGQEELEEVEAELAKREDELDRLEEGLPGSAETG  191 (294)
T ss_pred             HHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhHHHHHHHHHhccchhhhhhhcCCCCCccc
Confidence            899999999999999999999999999999999999999986  455689999999999877655431  1111111122


Q ss_pred             HhhhhhchhhhhhhhHHHHHHHHHHHhcccCcHHHHHHHHHhcccCCcEeehHHHHHHHHHHHHHHHHHHHHhhhccHHH
Q 030301           77 ELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKI  156 (179)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~af~~~flaE~GDKTQl~t~~Laa~~~~~~V~~G~~~a~~l~t~lav~~G~~l~~~l~~~~  156 (179)
                      +.+++.|+.++.+++|.|+++|.++|++|||||||++|++||++.||++|++|+.+||.+||++||+.|++++++|++|.
T Consensus       192 ~~~~~~r~~~t~ffspifikaFsltF~aEwGDRSQlaTI~laA~en~~gV~~G~~iGH~lCT~lAVigGk~lAskIS~rt  271 (294)
T KOG2881|consen  192 SQKSKFRRKLTLFFSPIFIKAFSLTFLAEWGDRSQLATIALAADENPLGVAIGAIIGHALCTGLAVIGGKYLASKISVRT  271 (294)
T ss_pred             hhhhhhhHHHHHhccHHHHHHHHHHHHHHhccHHHHHHHHHhcccCcceeeeccHHHHHHHHHHHHhhhHHHhhhheeEE
Confidence            33356688888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhccccCC
Q 030301          157 VALSGGVLFIVFGIQSFLSPVKS  179 (179)
Q Consensus       157 i~~~~g~lFl~fg~~~l~~~~~~  179 (179)
                      +.+++|++|+.||+..+++.++.
T Consensus       272 Vt~~ggi~Fi~Fgl~~i~~~~~~  294 (294)
T KOG2881|consen  272 VTLIGGILFIIFGLVYIFQGFDA  294 (294)
T ss_pred             EEEecchhHHHHHHHHHhcCCCC
Confidence            99999999999999999998863

>COG2119 Predicted membrane protein [Function unknown]

Probab=100.00  E-value=6.2e-37  Score=248.32  Aligned_cols=139  Identities=32%  Similarity=0.588  Sum_probs=123.8

Q ss_pred             ChhHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhcCCCChhhHHHHHHhhhhhhhhccccccCCCCCchHhhh
Q 030301            1 MTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDAFSDGGEAEEFEEVEKKLDADFKANAGATKEGSKADDELKK   80 (179)
Q Consensus         1 MT~lsv~~G~~l~~~lp~~~~~~~aa~lF~~FG~~~L~~~~~~~~~~ee~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (179)
                      ||.+|+++|++.++++|+++++|..+.+|++||+|+++|+..   ++||   .+                          
T Consensus        47 m~~la~~vG~~~~~~~~~~~~~~~~~~~Flafav~~l~edk~---~~~e---~~--------------------------   94 (190)
T COG2119          47 MHALAVLVGHAAASLLPERPLAWASGVLFLAFAVWMLIEDKE---DDEE---AQ--------------------------   94 (190)
T ss_pred             HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHhccccc---cccc---cc--------------------------
Confidence            899999999999999999999999999999999999999832   1221   10                          


Q ss_pred             hhchhhhhhhhHHHHHHHHHHHhcccCcHHHHHHHHHhcccC-CcEeehHHHHHHHHHHHHHHHHHHHHhhhccHHHHHH
Q 030301           81 QRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADEN-PFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVAL  159 (179)
Q Consensus        81 ~~~~~~~~~~~~~~~~af~~~flaE~GDKTQl~t~~Laa~~~-~~~V~~G~~~a~~l~t~lav~~G~~l~~~l~~~~i~~  159 (179)
                      ..++      +.+|.++|.++|++|||||||++|++||++|+ |+.|++|+++||++||+++|++|+++++|+|+|.++.
T Consensus        95 ~~~~------~~~f~~tfi~~FlaE~GDKTQiATIaLaA~~~~~~~V~~Gt~lg~~l~s~laVl~G~~ia~ki~~r~l~~  168 (190)
T COG2119          95 AASP------RGVFVTTFITFFLAELGDKTQIATIALAADYHSPWAVFAGTTLGMILASVLAVLLGKLIAGKLPERLLRF  168 (190)
T ss_pred             cccc------ccHHHHHHHHHHHHHhccHHHHHHHHHhhcCCCceeeehhhHHHHHHHHHHHHHHHHHHHccCCHHHHHH
Confidence            0011      25899999999999999999999999999975 6999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcccc
Q 030301          160 SGGVLFIVFGIQSFLSPV  177 (179)
Q Consensus       160 ~~g~lFl~fg~~~l~~~~  177 (179)
                      ++|++|++||+..+|+..
T Consensus       169 ~aallFl~fal~~~~~~~  186 (190)
T COG2119         169 IAALLFLIFALVLLWQVF  186 (190)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            999999999998888754

>PF01169 UPF0016: Uncharacterized protein family UPF0016; InterPro: IPR001727 A number of uncharacterised proteins share regions of similarities

Probab=99.94  E-value=6.2e-27  Score=167.05  Aligned_cols=76  Identities=47%  Similarity=0.727  Sum_probs=74.1

Q ss_pred             HHHHHHHHHhcccCcHHHHHHHHHhccc--CCcEeehHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHH
Q 030301           94 FLKAFSITFFGEWGDKSQLATIGLAADE--NPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFG  169 (179)
Q Consensus        94 ~~~af~~~flaE~GDKTQl~t~~Laa~~--~~~~V~~G~~~a~~l~t~lav~~G~~l~~~l~~~~i~~~~g~lFl~fg  169 (179)
                      |+++|.++|++|||||||++|+.||+||  +|++|++|+.+|++++|++++++|+++.+++|++++++++|++|++||
T Consensus         1 F~~sf~~iflaE~GDKTQl~t~~La~~~~~~~~~V~~G~~~al~~~~~lav~~G~~l~~~ip~~~i~~~~~~lFl~fG   78 (78)
T PF01169_consen    1 FLTSFLLIFLAELGDKTQLATIALAARYPRNPWPVFAGATLALALATGLAVLLGSWLASRIPERYIKWVAGALFLLFG   78 (78)
T ss_pred             CHHHHHHHHHHHhCcHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHC
Confidence            5789999999999999999999999999  899999999999999999999999999999999999999999999997

These include, Saccharomyces cerevisiae (Baker's yeast) hypothetical protein YBR187w. Schizosaccharomyces pombe (Fission yeast) hypothetical protein SpAC17G8.08c. Mus musculus (Mouse) protein pFT27. Synechocystis sp. (strain PCC 6803) hypothetical protein sll0615. These are hydrophobic proteins of 200 to 320 amino acids that seem to contain six or seven transmembrane domains.; GO: 0016020 membrane

>COG2119 Predicted membrane protein [Function unknown]

Probab=99.81  E-value=7.5e-20  Score=148.79  Aligned_cols=84  Identities=29%  Similarity=0.386  Sum_probs=81.1

Q ss_pred             HHHHHHHHHHhcccCcHHHHHHHHHhcccCCcEeehHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHH
Q 030301           93 IFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQS  172 (179)
Q Consensus        93 ~~~~af~~~flaE~GDKTQl~t~~Laa~~~~~~V~~G~~~a~~l~t~lav~~G~~l~~~l~~~~i~~~~g~lFl~fg~~~  172 (179)
                      .+..+..++++||+|||||+.++.||+||+|++|+.|...+++.+|.+++++|++....+|+++.++.++++|++||+|+
T Consensus         3 ~~~~s~~~v~laEiGDKT~lia~llA~r~~~~~v~~g~~~a~~~m~~la~~vG~~~~~~~~~~~~~~~~~~~Flafav~~   82 (190)
T COG2119           3 ALLVSLLMVALAEIGDKTQLIAMLLAMRYRRWPVFAGIAIALFAMHALAVLVGHAAASLLPERPLAWASGVLFLAFAVWM   82 (190)
T ss_pred             hHHHHHHHHHHHHhccHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHH
Confidence            46778889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccc
Q 030301          173 FLSP  176 (179)
Q Consensus       173 l~~~  176 (179)
                      +++.
T Consensus        83 l~ed   86 (190)
T COG2119          83 LIED   86 (190)
T ss_pred             hccc
Confidence            9876

>KOG2881 consensus Predicted membrane protein [Function unknown]

Probab=99.77  E-value=4.4e-19  Score=150.95  Aligned_cols=89  Identities=25%  Similarity=0.318  Sum_probs=85.6

Q ss_pred             hhHHHHHHHHHHHhcccCcHHHHHHHHHhcccCCcEeehHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHH
Q 030301           90 FSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFG  169 (179)
Q Consensus        90 ~~~~~~~af~~~flaE~GDKTQl~t~~Laa~~~~~~V~~G~~~a~~l~t~lav~~G~~l~~~l~~~~i~~~~g~lFl~fg  169 (179)
                      +.+.|..++.++|++|+||||+++++.||+||+...|+.|+..|++++|.+++.+|+.-.+.+|.++.+++++++|++||
T Consensus        65 ~~~~f~~SiSmI~vsEiGDKTFfiAAlmAmr~~R~~Vf~Ga~~AL~lMTiLS~~lG~aap~lipr~~T~~~~t~LF~iFG  144 (294)
T KOG2881|consen   65 FLQGFTASISMIFVSEIGDKTFFIAALMAMRYPRLTVFSGAMSALALMTILSVLLGWAAPNLIPRKYTYYLATALFLIFG  144 (294)
T ss_pred             HHHHHHHhhheeeeeeccchHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHH
Confidence            34789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhccccC
Q 030301          170 IQSFLSPVK  178 (179)
Q Consensus       170 ~~~l~~~~~  178 (179)
                      +++|+++++
T Consensus       145 lkmL~eg~~  153 (294)
T KOG2881|consen  145 LKMLKEGWE  153 (294)
T ss_pred             HHHHHHhhc
Confidence            999999864

>PRK11469 hypothetical protein; Provisional

Probab=98.59  E-value=1.1e-06  Score=72.10  Aligned_cols=136  Identities=20%  Similarity=0.295  Sum_probs=82.6

Q ss_pred             ChhHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhcCCCChhhHHHHHHhhhhhhhhccccccCCCCCchHhhh
Q 030301            1 MTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDAFSDGGEAEEFEEVEKKLDADFKANAGATKEGSKADDELKK   80 (179)
Q Consensus         1 MT~lsv~~G~~l~~~lp~~~~~~~aa~lF~~FG~~~L~~~~~~~~~~ee~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (179)
                      |+.++-.+|+.+.+++|+ +.||++..+.++.|.||++|++++++++++  +.+   .                     +
T Consensus        50 m~~~g~~~G~~l~~~i~~-~~~~i~~~lL~~lG~~mi~e~~~~~~~~~~--~~~---~---------------------~  102 (188)
T PRK11469         50 TPLIGWGMGMLASRFVLE-WNHWIAFVLLIFLGGRMIIEGFRGADDEDE--EPR---R---------------------R  102 (188)
T ss_pred             HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhccccccc--ccc---c---------------------C
Confidence            678889999999888777 779999999999999999999864322111  000   0                     0


Q ss_pred             hhchhhhhhhhHHHHHHHHHHHhcccCcHHHHHHHHHhcc-cCCcEeehHHHHHHHHHHHHHHHHHHHHhhhccHHHHHH
Q 030301           81 QRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAAD-ENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVAL  159 (179)
Q Consensus        81 ~~~~~~~~~~~~~~~~af~~~flaE~GDKTQl~t~~Laa~-~~~~~V~~G~~~a~~l~t~lav~~G~~l~~~l~~~~i~~  159 (179)
                        .+.     +..+..++.+-.      ..--+-++++.- .|++...+-.-+--++++..++..|+.+++++ .++..+
T Consensus       103 --~~~-----~~~l~LaiAtSi------DAlavGi~~~~~g~~~~~~~~~ig~~s~~~~~~G~~lG~~~g~~~-g~~a~~  168 (188)
T PRK11469        103 --HGF-----WLLVTTAIATSL------DAMAVGVGLAFLQVNIIATALAIGCATLIMSTLGMMVGRFIGSII-GKKAEI  168 (188)
T ss_pred             --CCH-----HHHHHHHHHHHH------HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence              000     011111111000      000111222211 24444444444555667777777888777654 567899


Q ss_pred             HHHHHHHHHHHHHhcccc
Q 030301          160 SGGVLFIVFGIQSFLSPV  177 (179)
Q Consensus       160 ~~g~lFl~fg~~~l~~~~  177 (179)
                      ++|++.++.|++.+++..
T Consensus       169 lgG~iLI~iGi~il~~h~  186 (188)
T PRK11469        169 LGGLVLIGIGVQILWTHF  186 (188)
T ss_pred             HHHHHHHHHHHHHHHHHc
Confidence            999999999999987653

>TIGR02840 spore_YtaF putative sporulation protein YtaF

Probab=98.35  E-value=7.9e-06  Score=67.81  Aligned_cols=44  Identities=18%  Similarity=0.539  Sum_probs=40.7

Q ss_pred             ChhHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhcCC
Q 030301            1 MTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDAFSDG   44 (179)
Q Consensus         1 MT~lsv~~G~~l~~~lp~~~~~~~aa~lF~~FG~~~L~~~~~~~   44 (179)
                      ||.++..+|+.+..++|+++.+|++++++++.|+||++|.++++
T Consensus        43 ~~~lg~~~G~~~~~~i~~~~~~~ig~~iLi~iG~~mi~~~~~~~   86 (206)
T TIGR02840        43 FIFISMLLGKFLAKFLPPKVTEILGAFILIAIGIWIIYNAFRPK   86 (206)
T ss_pred             HHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            68899999999999999999999999999999999999998643

This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.

>COG1971 Predicted membrane protein [Function unknown]

Probab=98.19  E-value=5.4e-05  Score=62.43  Aligned_cols=41  Identities=24%  Similarity=0.534  Sum_probs=35.4

Q ss_pred             hHHHHHHhhhhhhhh---HHHHHHHHHHHHHHHHHHHhhhhhcC
Q 030301            3 ILSAVVGWVAPNLIS---RKLTHHITTVLFFGFGLWSLWDAFSD   43 (179)
Q Consensus         3 ~lsv~~G~~l~~~lp---~~~~~~~aa~lF~~FG~~~L~~~~~~   43 (179)
                      .++-++|.+...++|   ..+-||++.++..+.|+||++|+.++
T Consensus        48 ~i~pliG~~~g~~~s~~i~~~~~wigf~lL~~lG~~mI~e~f~~   91 (190)
T COG1971          48 AIMPLIGWFIGKFLSTFIAEWAHWIGFVLLIILGLKMIIEGFKN   91 (190)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Confidence            466677888877777   78899999999999999999999874

>PF01169 UPF0016: Uncharacterized protein family UPF0016; InterPro: IPR001727 A number of uncharacterised proteins share regions of similarities

Probab=97.68  E-value=3.7e-05  Score=54.76  Aligned_cols=33  Identities=24%  Similarity=0.367  Sum_probs=31.7

Q ss_pred             ChhHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Q 030301            1 MTILSAVVGWVAPNLISRKLTHHITTVLFFGFG   33 (179)
Q Consensus         1 MT~lsv~~G~~l~~~lp~~~~~~~aa~lF~~FG   33 (179)
                      ||.+++.+|+++++.+|+++++++++++|++||
T Consensus        46 ~~~lav~~G~~l~~~ip~~~i~~~~~~lFl~fG   78 (78)
T PF01169_consen   46 ATGLAVLLGSWLASRIPERYIKWVAGALFLLFG   78 (78)
T ss_pred             HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHC
Confidence            589999999999999999999999999999997

These include, Saccharomyces cerevisiae (Baker's yeast) hypothetical protein YBR187w. Schizosaccharomyces pombe (Fission yeast) hypothetical protein SpAC17G8.08c. Mus musculus (Mouse) protein pFT27. Synechocystis sp. (strain PCC 6803) hypothetical protein sll0615. These are hydrophobic proteins of 200 to 320 amino acids that seem to contain six or seven transmembrane domains.; GO: 0016020 membrane

>PF01810 LysE: LysE type translocator; InterPro: IPR001123 Lysine exporter protein is involved in the efflux of excess L-lysine as a control for intracellular levels of L-lysine

Probab=97.54  E-value=0.0035  Score=50.04  Aligned_cols=126  Identities=20%  Similarity=0.252  Sum_probs=67.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhcCCCChhhHHHHHHhhhhhhhhccccccCCCCCchHhhhhhchhhhhhhhH---HHH
Q 030301           19 KLTHHITTVLFFGFGLWSLWDAFSDGGEAEEFEEVEKKLDADFKANAGATKEGSKADDELKKQRRPFLLQFFSP---IFL   95 (179)
Q Consensus        19 ~~~~~~aa~lF~~FG~~~L~~~~~~~~~~ee~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~   95 (179)
                      .+++++.++.++++|.+++++..++++++++..+ +      .+.              .+.-.+.......+|   +|+
T Consensus        60 ~~l~~~G~~~L~~lg~~~~~~~~~~~~~~~~~~~-~------~~~--------------~~~f~~g~~~~~~NPk~il~~  118 (191)
T PF01810_consen   60 MILKLLGALYLLYLGYKLLRSKFSSKSSTQSEAK-K------QSK--------------SKSFLTGFLLNLLNPKAILFW  118 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccCcchhhhhhhc-c------ccH--------------HHHHHHHHHHHHHhHHHHHHH
Confidence            4689999999999999999987543221111100 0      000              000000011111122   455


Q ss_pred             HHHHHHHhcccCcHHHHHHHHHhcccCCcEeehHHHHHHHHHHHHHHHHHHHHhhhccH---HHHHHHHHHHHHHHHHHH
Q 030301           96 KAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAVIGGKSLASQISE---KIVALSGGVLFIVFGIQS  172 (179)
Q Consensus        96 ~af~~~flaE~GDKTQl~t~~Laa~~~~~~V~~G~~~a~~l~t~lav~~G~~l~~~l~~---~~i~~~~g~lFl~fg~~~  172 (179)
                      .++...|+..-.+.+|.....+           |...+.++...+-...++.+.+++..   +++++++|++++.+|++.
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~li~~av~l  187 (191)
T PF01810_consen  119 LAVFPQFISPEYSSTQFLVFIL-----------GIFLGSLLWFLLLALLGSRLRRKFSSRRIRWINRISGLLLIGFAVYL  187 (191)
T ss_pred             HHhhhcccCccccHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence            5555556665334444444433           33333334444444444444444433   388999999999999999


Q ss_pred             hccc
Q 030301          173 FLSP  176 (179)
Q Consensus       173 l~~~  176 (179)
                      ++++
T Consensus       188 ~~~g  191 (191)
T PF01810_consen  188 LYSG  191 (191)
T ss_pred             HHcC
Confidence            8864

A number of proteins belong to this family. These include the chemotactic transduction protein from Pseudomonas aeruginosa, the threonine efflux protein and a number of uncharacterised proteins from a variety of sources.; GO: 0006865 amino acid transport, 0016020 membrane

>COG4280 Predicted membrane protein [Function unknown]

Probab=97.42  E-value=0.00058  Score=57.08  Aligned_cols=144  Identities=23%  Similarity=0.319  Sum_probs=93.4

Q ss_pred             hHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhc------CCCChhhHHHHHHhhhhhhhhccccccCCCCCch
Q 030301            3 ILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDAFS------DGGEAEEFEEVEKKLDADFKANAGATKEGSKADD   76 (179)
Q Consensus         3 ~lsv~~G~~l~~~lp~~~~~~~aa~lF~~FG~~~L~~~~~------~~~~~ee~~E~~~~~~~~~~~~~~~~~~~~~~~~   76 (179)
                      .++.++|..+ +++|-++.+++++++.+.||.+-.|....      ...+||..|   |.+..+.++.            
T Consensus        49 ~l~lvlGk~L-~lvPln~lqiv~gvLLllFG~rw~Rsavrr~ag~rkg~~ee~le---E~~~ldq~e~------------  112 (236)
T COG4280          49 ILTLVLGKLL-YLVPLNYLQIVSGVLLLLFGYRWIRSAVRRFAGIRKGGGEEKLE---EGIVLDQEEE------------  112 (236)
T ss_pred             HHHHHHccce-eeeechHHHHHHHHHHHHHHHHHHHHHHHHHhchhccCchhhHh---hhhhcccccc------------
Confidence            3566778887 88999999999999999999999997642      112222222   2222111100            


Q ss_pred             HhhhhhchhhhhhhhHHHHHHHHHHHhcccCcHHHHHHHHHhccc-CCcEeehHHHHHHHHHHHHHHHHHHHHhhhccHH
Q 030301           77 ELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADE-NPFGVVLGGIIGQALCTTAAVIGGKSLASQISEK  155 (179)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~af~~~flaE~GDKTQl~t~~Laa~~-~~~~V~~G~~~a~~l~t~lav~~G~~l~~~l~~~  155 (179)
                          . -+      +-.+..+|-...+ | |=.-.++.++|.+.+ ++..-..|+..|.++.-.++.++-+.++ |+|+.
T Consensus       113 ----g-~~------~la~l~~fk~v~L-e-glEv~~iVialgaa~sqwleAi~gagfA~vlvlvl~~~lh~pla-rvpe~  178 (236)
T COG4280         113 ----G-FS------KLALLVVFKVVAL-E-GLEVSLIVIALGAASSQWLEAIMGAGFASVLVLVLTAILHSPLA-RVPEP  178 (236)
T ss_pred             ----c-ch------hhhHHHHhHHHHH-h-hheeeeeeeeechhhhHHHHHHHHHHHHHHHHHHHHHHhccHHh-hCCch
Confidence                0 00      0123333332221 1 222234556666554 5667788899999888888888888885 69999


Q ss_pred             HHHHHHHHHHHHHHHHHhccc
Q 030301          156 IVALSGGVLFIVFGIQSFLSP  176 (179)
Q Consensus       156 ~i~~~~g~lFl~fg~~~l~~~  176 (179)
                      .+++.+|.+...||.+=+-++
T Consensus       179 ~lKfvag~lL~sfGtfWlgeg  199 (236)
T COG4280         179 HLKFVAGALLFSFGTFWLGEG  199 (236)
T ss_pred             hHHHHHHHHHHHhhHHHhccc
Confidence            999999999999998665443

>COG0730 Predicted permeases [General function prediction only]

Probab=95.66  E-value=0.19  Score=42.08  Aligned_cols=159  Identities=16%  Similarity=0.063  Sum_probs=87.1

Q ss_pred             hHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhcCCCChhhHHHHHHhhhhhhhhccccccCCCCCchHhhhhh
Q 030301            3 ILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDAFSDGGEAEEFEEVEKKLDADFKANAGATKEGSKADDELKKQR   82 (179)
Q Consensus         3 ~lsv~~G~~l~~~lp~~~~~~~aa~lF~~FG~~~L~~~~~~~~~~ee~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (179)
                      ++.+.+|.++...+|+++.+.+.+.+.++.++++++...+..+ +++.++.   ......            ........
T Consensus        84 ~~G~~lG~~l~~~~~~~~l~~~~~~~ll~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~------------~~~~~g~~  147 (258)
T COG0730          84 LIGAFLGALLALLLPAELLKLLFGLLLLLLALYMLLGPRLAKA-EDRAARL---RPLLFA------------LALLIGFL  147 (258)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhcccccc-ccccccc---CcchhH------------HHHHHHHH
Confidence            4677888888889999999999999999999999997642000 0000000   000000            00000000


Q ss_pred             chhhhhhhh--HHHHHHHHHHHhcccCcHHHHHHHHHh---------cccC--CcEeehHHHHHHHHHHHHHHHHHHHHh
Q 030301           83 RPFLLQFFS--PIFLKAFSITFFGEWGDKSQLATIGLA---------ADEN--PFGVVLGGIIGQALCTTAAVIGGKSLA  149 (179)
Q Consensus        83 ~~~~~~~~~--~~~~~af~~~flaE~GDKTQl~t~~La---------a~~~--~~~V~~G~~~a~~l~t~lav~~G~~l~  149 (179)
                      -...+..+.  ..+...-.+..+....+|--.+|-...         ..|.  .-.+-......+.+.+.++...|.++.
T Consensus       148 ~G~~sG~~G~GgG~~~vp~l~~~~~~~~~~~~~ts~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~g~~~G~~lG~~l~  227 (258)
T COG0730         148 AGFLSGLFGVGGGFGIVPALLLLLLLPLKLAVATSLAIILNTASNGAALYLFALGAVDWPLALLLAVGSILGAYLGARLA  227 (258)
T ss_pred             HHHHHhcccCCchHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence            000000000  001222223344444433322222111         1111  111112222278899999999999999


Q ss_pred             hhccHHHHHHHHHHHHHHHHHHHhcccc
Q 030301          150 SQISEKIVALSGGVLFIVFGIQSFLSPV  177 (179)
Q Consensus       150 ~~l~~~~i~~~~g~lFl~fg~~~l~~~~  177 (179)
                      +++|++.++++-+.+.+..+++++++..
T Consensus       228 ~~~~~~~lr~~~~~~~~~~~~~~~~~~~  255 (258)
T COG0730         228 RRLSPKVLRRLFALVLLAVAIKLLLRGL  255 (258)
T ss_pred             HhcCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999998876643

>PF01925 TauE: Sulfite exporter TauE/SafE; InterPro: IPR002781 This family is found in integral membrane proteins of prokaryotes which are uncharacterised

Probab=95.60  E-value=0.43  Score=38.99  Aligned_cols=45  Identities=18%  Similarity=0.111  Sum_probs=39.0

Q ss_pred             ehHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHH
Q 030301          127 VLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQ  171 (179)
Q Consensus       127 ~~G~~~a~~l~t~lav~~G~~l~~~l~~~~i~~~~g~lFl~fg~~  171 (179)
                      .+...+.+...+.++..+|+++.+++|+++++++..++.++.|+.
T Consensus       195 ~~~~~~~~~~~~~~G~~lG~~~~~~i~~~~~~~~~~~ll~~~~~~  239 (240)
T PF01925_consen  195 MLLLSLILLPGAFLGAFLGAKLARKIPQKVFRRIFLILLLLSGLK  239 (240)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence            455556688889999999999999999999999999998888875

; GO: 0016021 integral to membrane

>PRK10621 hypothetical protein; Provisional

Probab=95.53  E-value=0.82  Score=38.75  Aligned_cols=46  Identities=9%  Similarity=-0.036  Sum_probs=39.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHhccc
Q 030301          131 IIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSP  176 (179)
Q Consensus       131 ~~a~~l~t~lav~~G~~l~~~l~~~~i~~~~g~lFl~fg~~~l~~~  176 (179)
                      .+.+...+.++...|..+.+++|++.++++...+-+..|+.++++.
T Consensus       209 ~l~l~~g~~~G~~lG~~l~~~~~~~~lr~~~~~ll~~~~i~~~~~~  254 (266)
T PRK10621        209 GFVMLVGQFLGARLGARLVLSKGQKLIRPMIVIVSAVMSAKLLYDS  254 (266)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCchHhHHHHHHHHHHHHHHHHHHH
Confidence            3446677889999999999999999999999999999999887654

>COG4280 Predicted membrane protein [Function unknown]

Probab=95.17  E-value=0.034  Score=46.68  Aligned_cols=67  Identities=22%  Similarity=0.314  Sum_probs=56.8

Q ss_pred             HHHHHHHHHhcc--cCCcEeehHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHhccc
Q 030301          109 KSQLATIGLAAD--ENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSP  176 (179)
Q Consensus       109 KTQl~t~~Laa~--~~~~~V~~G~~~a~~l~t~lav~~G~~l~~~l~~~~i~~~~g~lFl~fg~~~l~~~  176 (179)
                      -+-..+++.+-.  |++..-+.|+.+|+++.-.++..+|+.+ ..+|.+++++++|++.+.||-.-.+++
T Consensus        17 lvEa~aIa~avg~~~~wr~al~ga~lglalvl~l~lvlGk~L-~lvPln~lqiv~gvLLllFG~rw~Rsa   85 (236)
T COG4280          17 LVEAGAIAAAVGNIYKWRLALIGAVLGLALVLILTLVLGKLL-YLVPLNYLQIVSGVLLLLFGYRWIRSA   85 (236)
T ss_pred             HHHHHHHHHhhhhhccccHHHHHHHHHHHHHHHHHHHHccce-eeeechHHHHHHHHHHHHHHHHHHHHH
Confidence            345567777743  6788889999999999999999999998 589999999999999999998655544

>TIGR02840 spore_YtaF putative sporulation protein YtaF

Probab=95.14  E-value=0.041  Score=45.65  Aligned_cols=54  Identities=22%  Similarity=0.247  Sum_probs=45.1

Q ss_pred             cEeehHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHhcccc
Q 030301          124 FGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSPV  177 (179)
Q Consensus       124 ~~V~~G~~~a~~l~t~lav~~G~~l~~~l~~~~i~~~~g~lFl~fg~~~l~~~~  177 (179)
                      +...+-...-+.+++.++..+|+.+.+++|+++-+++++++++++|+++++++.
T Consensus        30 ~~~~l~ig~~~~~~~~lg~~~G~~~~~~i~~~~~~~ig~~iLi~iG~~mi~~~~   83 (206)
T TIGR02840        30 FLSNLIIAVISGLFIFISMLLGKFLAKFLPPKVTEILGAFILIAIGIWIIYNAF   83 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHH
Confidence            333334444556899999999999999999999999999999999999998763

This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.

>TIGR00949 2A76 The Resistance to Homoserine/Threonine (RhtB) Family protein

Probab=95.11  E-value=1.1  Score=35.51  Aligned_cols=27  Identities=7%  Similarity=0.045  Sum_probs=20.6

Q ss_pred             hhhhH--HHHHHHHHHHHHHHHHHHhhhh
Q 030301           14 NLISR--KLTHHITTVLFFGFGLWSLWDA   40 (179)
Q Consensus        14 ~~lp~--~~~~~~aa~lF~~FG~~~L~~~   40 (179)
                      +..|.  .+++++.++-.+++|.+++++.
T Consensus        48 ~~~~~~~~~l~~~Ga~yLl~lg~~~~~~~   76 (185)
T TIGR00949        48 SKSVILFTVIKWLGGAYLIYLGIKMLRKK   76 (185)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            33463  5678888888889999999864

>PF01914 MarC: MarC family integral membrane protein; InterPro: IPR002771 Members of this family are integral membrane proteins that includes the antibiotic resistance protein MarC

Probab=94.75  E-value=0.49  Score=39.15  Aligned_cols=139  Identities=19%  Similarity=0.179  Sum_probs=86.4

Q ss_pred             hHHHHHHhhhhhhh--hHHHHHHHHHHHHHHHHHHHhhhhhcCCC-ChhhHHHHHHhhhhhhhhccccccCCCCCchHhh
Q 030301            3 ILSAVVGWVAPNLI--SRKLTHHITTVLFFGFGLWSLWDAFSDGG-EAEEFEEVEKKLDADFKANAGATKEGSKADDELK   79 (179)
Q Consensus         3 ~lsv~~G~~l~~~l--p~~~~~~~aa~lF~~FG~~~L~~~~~~~~-~~ee~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (179)
                      ++..++|+++-+++  +..-.++..+++.+..|+.|++...++++ .++|.+|.+      +..+               
T Consensus        52 l~f~~~G~~iL~~fgIsl~af~IaGGiiL~~ia~~ml~~~~~~~~~~~~~~~~~~------~~~~---------------  110 (203)
T PF01914_consen   52 LIFAFFGQLILNFFGISLPAFRIAGGIILFLIALEMLFGSPSSEKSSPDEKEEAK------DAED---------------  110 (203)
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCCCCcccccccchhhhhc------cccc---------------
Confidence            35667788876644  77788999999999999999996643211 111111100      0000               


Q ss_pred             hhhchhhhhhhhHHHHHHHHHHHhcccCcHHHHHHHHHhcccCC---cEeehHHHHHHHHHHHHHHHHHHHHhhhccH--
Q 030301           80 KQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENP---FGVVLGGIIGQALCTTAAVIGGKSLASQISE--  154 (179)
Q Consensus        80 ~~~~~~~~~~~~~~~~~af~~~flaE~GDKTQl~t~~Laa~~~~---~~V~~G~~~a~~l~t~lav~~G~~l~~~l~~--  154 (179)
                      ....        | +.      +--=-|.-|=-+++.++++++.   ....+++.+...+.+.+.-..++.+.+++.+  
T Consensus       111 ~ai~--------P-La------~PllaGPG~It~vi~~~~~~~~~~~~~~~~~ai~~~~~~~~l~l~~a~~i~~~lG~~g  175 (203)
T PF01914_consen  111 IAIV--------P-LA------IPLLAGPGTITTVIVLSAEAGSLQSLLIVLIAILLVALITYLILRFADKIMRRLGKTG  175 (203)
T ss_pred             ceec--------c-cc------hhhccChHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHH
Confidence            0000        0 11      1111355555556666766653   3456666777777788888888888877754  


Q ss_pred             -HHHHHHHHHHHHHHHHHHhcccc
Q 030301          155 -KIVALSGGVLFIVFGIQSFLSPV  177 (179)
Q Consensus       155 -~~i~~~~g~lFl~fg~~~l~~~~  177 (179)
                       +.+.++.|++-..+|+.+..++.
T Consensus       176 ~~vi~Ri~Glil~aiavq~i~~Gl  199 (203)
T PF01914_consen  176 LQVITRIMGLILAAIAVQMILSGL  199 (203)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence             57788999999999998877653

These proteins may be transporters. ; GO: 0016021 integral to membrane

>PF03741 TerC: Integral membrane protein TerC family; InterPro: IPR005496 A family containining a number of integral membrane proteins is named after TerC protein

Probab=94.65  E-value=1.3  Score=36.14  Aligned_cols=58  Identities=22%  Similarity=0.333  Sum_probs=46.7

Q ss_pred             HHHHHHhcccCCcEeehHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHhc
Q 030301          112 LATIGLAADENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFL  174 (179)
Q Consensus       112 l~t~~Laa~~~~~~V~~G~~~a~~l~t~lav~~G~~l~~~l~~~~i~~~~g~lFl~fg~~~l~  174 (179)
                      ++.++++  .+++.++.|...+...+-..+-.+.+.+.++   .++++.++.+-...|+.++.
T Consensus       125 ~a~~~it--~~~~iv~~g~i~si~~m~~~~~~~~~~l~~~---p~l~~~~~~~L~~ig~~li~  182 (183)
T PF03741_consen  125 LAAVGIT--DDFFIVITGNIISILLMRFLSFLLAKLLERF---PYLKYLAAAILGFIGVKLIL  182 (183)
T ss_pred             HHHHHHh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhh
Confidence            4555555  7889999999999999999999999998763   67788888888888887764

TerC has been implicated in resistance to tellurium, and may be involved in efflux of tellurium ions. The tellurite-resistant Escherichia coli strain KL53 was found during testing of a group of clinical isolates for antibiotic and heavy metal ion resistance []. The determinant of the strain's tellurite resistance was located on a large conjugative plasmid, and analyses showed the genes terB, terC, terD and terE were essential for conservation of this resistance. Members of this family contain a number of conserved aspartates which may be involved in metal ion binding.; GO: 0016021 integral to membrane

>PRK10995 inner membrane protein; Provisional

Probab=94.64  E-value=0.65  Score=38.79  Aligned_cols=39  Identities=10%  Similarity=0.027  Sum_probs=31.1

Q ss_pred             hHHHHHHhhhhhhh--hHHHHHHHHHHHHHHHHHHHhhhhh
Q 030301            3 ILSAVVGWVAPNLI--SRKLTHHITTVLFFGFGLWSLWDAF   41 (179)
Q Consensus         3 ~lsv~~G~~l~~~l--p~~~~~~~aa~lF~~FG~~~L~~~~   41 (179)
                      ++..+.|..+-+++  +....++..+++.+.+|++|+++..
T Consensus        56 l~f~~~G~~il~~fgIs~~a~rIaGGilL~~igi~ml~~~~   96 (221)
T PRK10995         56 MVAFYAGQLVMSTFGISIPGLRIAGGLIVAFIGFRMLFPQQ   96 (221)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            45677788876655  5667899999999999999998653

>PF03596 Cad: Cadmium resistance transporter; InterPro: IPR004676 These proteins are members of the Cadmium Resistance (CadD) Family

Probab=94.01  E-value=0.17  Score=41.90  Aligned_cols=135  Identities=15%  Similarity=0.140  Sum_probs=72.9

Q ss_pred             HHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhcCCCChhhHHHHHHhhhhhhhhccccccCCCCCchHhhhhhch
Q 030301            5 SAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDAFSDGGEAEEFEEVEKKLDADFKANAGATKEGSKADDELKKQRRP   84 (179)
Q Consensus         5 sv~~G~~l~~~lp~~~~~~~aa~lF~~FG~~~L~~~~~~~~~~ee~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (179)
                      |...+.. ..++|++|+--+.+.+=++.|+|.+..+   ++|||  +|++++.++                    ++.+ 
T Consensus        43 Sl~~~~~-l~~ip~~wiLGlLGliPI~lGi~~l~~~---~~~~e--~~~~~~~~~--------------------~~~~-   95 (191)
T PF03596_consen   43 SLLGAFG-LLFIPPEWILGLLGLIPIYLGIKALFSG---EDDDE--EEAEEKLNS--------------------PKSN-   95 (191)
T ss_pred             HHHHHHH-HHhCCHHHHHHHHHHHHHHHHHHHHHcC---CCccc--ccccccccc--------------------cccc-
Confidence            4444444 4689999997888899999999988864   21111  112211110                    0001 


Q ss_pred             hhhhhhhHHHHHHHHHHHhcccCcHHHHHHHHHhcccCCcEeehHHHHHHHHHHHHHHHHHHHHhhh-----ccHHHHHH
Q 030301           85 FLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAVIGGKSLASQ-----ISEKIVAL  159 (179)
Q Consensus        85 ~~~~~~~~~~~~af~~~flaE~GDKTQl~t~~Laa~~~~~~V~~G~~~a~~l~t~lav~~G~~l~~~-----l~~~~i~~  159 (179)
                             +.+ -+...+.+|-=||+==+=+=.+|+..  +.=+.-...-..++.++-+.+++.++++     +=+|+=++
T Consensus        96 -------~~i-~~Va~iTiAnGgDNigIYiP~Fa~~s--~~~l~v~l~vF~ilv~v~c~la~~l~~~p~i~~~leryg~~  165 (191)
T PF03596_consen   96 -------SLI-LTVAAITIANGGDNIGIYIPLFASLS--LAELIVILIVFLILVGVWCFLAYKLARIPIIAEFLERYGRW  165 (191)
T ss_pred             -------chh-HHhhhhhhhcCCCeEEEeehhhhcCC--HHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHhccc
Confidence                   111 11122333334443211111111110  1111223344556677778888887643     23677789


Q ss_pred             HHHHHHHHHHHHHhccc
Q 030301          160 SGGVLFIVFGIQSFLSP  176 (179)
Q Consensus       160 ~~g~lFl~fg~~~l~~~  176 (179)
                      +.-++|+..|++.++++
T Consensus       166 l~p~v~I~LGi~Il~es  182 (191)
T PF03596_consen  166 LVPIVYIGLGIYILIES  182 (191)
T ss_pred             HHHHHHHHhCceeeEeC
Confidence            99999999999888764

To date, this family of proteins has only been found in Gram-positive bacteria. The CadD family includes two close orthologues in two Staphylococcus species that have been reported to function in cadmium resistance, and another staphylococcal protein that has been reported to possibly function in quaternary ammonium ion export.

>TIGR03718 R_switched_Alx integral membrane protein, TerC family

Probab=93.93  E-value=2.9  Score=37.02  Aligned_cols=72  Identities=15%  Similarity=0.121  Sum_probs=51.0

Q ss_pred             HhcccCcHHHH---HHHHHhcccCCcEeehHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHhccc
Q 030301          102 FFGEWGDKSQL---ATIGLAADENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSP  176 (179)
Q Consensus       102 flaE~GDKTQl---~t~~Laa~~~~~~V~~G~~~a~~l~t~lav~~G~~l~~~l~~~~i~~~~g~lFl~fg~~~l~~~  176 (179)
                      ..-|.=|-.+=   ..+..|...+|+.|+.+...|....-.+.-++.+.+.+   -.++++.++.+-...|+.++.+.
T Consensus       196 i~Ie~~DlvFslDSIpAi~aiT~d~~iV~tsnifaIlgLR~lyf~l~~ll~r---f~~L~~~~a~iL~fIGvkmll~~  270 (302)
T TIGR03718       196 VLVETTDLIFAVDSIPAIFAITQDPFIVFTSNIFAILGLRSLYFLLAGLLER---FHYLKYGLAVILVFIGVKMLLHA  270 (302)
T ss_pred             HHHHHHHHHHhhccHHHHHHhhcCCeEEehHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHhh
Confidence            34455565442   23444555789999999998887766666667777755   36788888888889999888763

Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains TerC itself from Alcaligenes sp. plasmid IncHI2 pMER610 and from Proteus mirabilis. It also contains the alkaline-inducible E. coli protein Alx, which unlike the two TerC examples is preceded by a yybP-ykoY leader.

>TIGR03716 R_switched_YkoY integral membrane protein, YkoY family

Probab=93.90  E-value=1.4  Score=37.11  Aligned_cols=54  Identities=28%  Similarity=0.254  Sum_probs=43.8

Q ss_pred             ccCCcEeehHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHhccc
Q 030301          120 DENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSP  176 (179)
Q Consensus       120 ~~~~~~V~~G~~~a~~l~t~lav~~G~~l~~~l~~~~i~~~~g~lFl~fg~~~l~~~  176 (179)
                      ..+|+.++.|...+...+-..+-.+.+++.++   .++++.++.+-...|+.++.++
T Consensus       121 t~~~~ii~~g~~~sIl~lr~~s~~l~~li~r~---p~L~~~~~~iL~~ig~kLil~~  174 (215)
T TIGR03716       121 SGQFWVVFLGGIIGILIMRFAATIFVKLLERF---PELETAAFLLIGWIGVKLLLET  174 (215)
T ss_pred             ccChHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence            36899999999999999888888888887653   5677788888888888888753

Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains proteins YceF and YkoY from Bacillus subtilis. A transport function is proposed.

>TIGR03717 R_switched_YjbE integral membrane protein, YjbE family

Probab=93.31  E-value=2.8  Score=34.02  Aligned_cols=122  Identities=14%  Similarity=0.050  Sum_probs=73.7

Q ss_pred             HHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhcCCCChhhHHHHHHhhhhhhhhccccccCCCCCchHhhhhhc
Q 030301            4 LSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDAFSDGGEAEEFEEVEKKLDADFKANAGATKEGSKADDELKKQRR   83 (179)
Q Consensus         4 lsv~~G~~l~~~lp~~~~~~~aa~lF~~FG~~~L~~~~~~~~~~ee~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (179)
                      +..++|.++-+   -.+.++..|++.++.|.+|+++..   + +++.   +   +                     +..+
T Consensus        49 if~~~G~~ll~---~~~~~iaGGllLl~ia~~ml~~~~---~-~~~~---~---~---------------------~~~~   94 (176)
T TIGR03717        49 LLTAVAVYLLA---IPFLKLIGGLLLLWIGWKLLLEEE---E-EQGG---D---V---------------------KGST   94 (176)
T ss_pred             HHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHhccc---c-cccc---c---c---------------------cccC
Confidence            44566777645   477899999999999999987641   1 1110   0   0                     0001


Q ss_pred             hhhhhhhhHHHHHHHHHHHhcccCcHHH-----HHHHHHhcccCCcEeehHHHHHHHHHHHHHHHHHHHHhhhccHHHHH
Q 030301           84 PFLLQFFSPIFLKAFSITFFGEWGDKSQ-----LATIGLAADENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVA  158 (179)
Q Consensus        84 ~~~~~~~~~~~~~af~~~flaE~GDKTQ-----l~t~~Laa~~~~~~V~~G~~~a~~l~t~lav~~G~~l~~~l~~~~i~  158 (179)
                               .++.+...   -|+=|-.+     ++.++. ++.+.+.++.|..++..++-..+-++.+++.++   .+++
T Consensus        95 ---------~~~~~v~~---I~~~D~~fS~DsV~a~~~~-~~~~~~li~~g~~i~i~~m~~~s~~~~~~~~~~---p~l~  158 (176)
T TIGR03717        95 ---------TLWAAIKT---IVIADAVMSLDNVLAVAGA-AHGHLGLLIFGLLLSIPIIVWGSTLILKLMDRF---PWII  158 (176)
T ss_pred             ---------cHHHHHHH---HHHHHHHHHHHHHHHHHHH-hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH
Confidence                     12222221   23333332     222222 335778888898888888877777777777653   5677


Q ss_pred             HHHHHHHHHHHHHHhcc
Q 030301          159 LSGGVLFIVFGIQSFLS  175 (179)
Q Consensus       159 ~~~g~lFl~fg~~~l~~  175 (179)
                      +.++..-...|+.++++
T Consensus       159 ~~~~~~L~~ig~kl~~~  175 (176)
T TIGR03717       159 YIGAALLGYVAGEMIVT  175 (176)
T ss_pred             HHHHHHHHHHHHHHhcC
Confidence            77777777888887753

Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family commonly are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains protein YjbE from Bacillus subtilis. A transport function is proposed.

>COG4300 CadD Predicted permease, cadmium resistance protein [Inorganic ion transport and metabolism]

Probab=92.38  E-value=0.28  Score=40.67  Aligned_cols=38  Identities=13%  Similarity=0.116  Sum_probs=32.1

Q ss_pred             hHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhh
Q 030301            3 ILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDA   40 (179)
Q Consensus         3 ~lsv~~G~~l~~~lp~~~~~~~aa~lF~~FG~~~L~~~   40 (179)
                      +++.+++.+...++|++++--+.++.=++-|+|-++.+
T Consensus        51 ilaSL~~a~v~~fvp~e~I~glLGLIPi~LGik~l~~~   88 (205)
T COG4300          51 ILASLLFAFVLNFVPEEWILGLLGLIPIYLGIKVLILG   88 (205)
T ss_pred             HHHHHHHHHHHhhCcHHHHHHHHhHHHHHHhhHHhhcc
Confidence            45666777777899999999889999999999998865

>COG1280 RhtB Putative threonine efflux protein [Amino acid transport and metabolism]

Probab=92.02  E-value=4.6  Score=33.19  Aligned_cols=23  Identities=39%  Similarity=0.522  Sum_probs=20.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHhccc
Q 030301          154 EKIVALSGGVLFIVFGIQSFLSP  176 (179)
Q Consensus       154 ~~~i~~~~g~lFl~fg~~~l~~~  176 (179)
                      .+++++..|.+|+.+|++++++.
T Consensus       185 ~~~~~~~~G~~li~~g~~l~~~~  207 (208)
T COG1280         185 SRIINRLFGVLLIGFGVKLALSR  207 (208)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcc
Confidence            78999999999999999988754

>PRK11469 hypothetical protein; Provisional

Probab=91.98  E-value=0.3  Score=40.07  Aligned_cols=42  Identities=17%  Similarity=0.042  Sum_probs=37.4

Q ss_pred             HHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHhcccc
Q 030301          135 ALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSPV  177 (179)
Q Consensus       135 ~l~t~lav~~G~~l~~~l~~~~i~~~~g~lFl~fg~~~l~~~~  177 (179)
                      .+++.++-..|+.+.+++|+ +-|++++.+.+..|.++++++.
T Consensus        48 ~~m~~~g~~~G~~l~~~i~~-~~~~i~~~lL~~lG~~mi~e~~   89 (188)
T PRK11469         48 TLTPLIGWGMGMLASRFVLE-WNHWIAFVLLIFLGGRMIIEGF   89 (188)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence            77888899999999999777 6699999999999999999874

>PRK10229 threonine efflux system; Provisional

Probab=91.77  E-value=5.9  Score=31.98  Aligned_cols=21  Identities=38%  Similarity=0.537  Sum_probs=18.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhcc
Q 030301          155 KIVALSGGVLFIVFGIQSFLS  175 (179)
Q Consensus       155 ~~i~~~~g~lFl~fg~~~l~~  175 (179)
                      +++++++|++++.+|++.+++
T Consensus       185 ~~in~~~g~~li~~~i~l~~~  205 (206)
T PRK10229        185 KWIDGFAGALFAGFGIHLIIS  205 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHhc
Confidence            578899999999999998765

>PRK10019 nickel/cobalt efflux protein RcnA; Provisional

Probab=91.02  E-value=10  Score=33.19  Aligned_cols=71  Identities=13%  Similarity=0.047  Sum_probs=50.2

Q ss_pred             HHHhcccCcHHHHHHHHHhcccCCcEeehHHHHHHHHHHHHHHHHHHHHhhhc--cHHHHH---HHHHHHHHHHHHHHhc
Q 030301          100 ITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAVIGGKSLASQI--SEKIVA---LSGGVLFIVFGIQSFL  174 (179)
Q Consensus       100 ~~flaE~GDKTQl~t~~Laa~~~~~~V~~G~~~a~~l~t~lav~~G~~l~~~l--~~~~i~---~~~g~lFl~fg~~~l~  174 (179)
                      +.|..-+|+-+.=....++.       -+|..+.+.+...+++...+...++.  ..++++   ++++.+=+++|+++.|
T Consensus       199 LL~a~~lg~~~~Gi~~vlaf-------slGtaltm~~vgll~~~~~r~~~~~~~~~~~~~~~~p~~s~~l~i~~G~~~~~  271 (279)
T PRK10019        199 LLICIQLKALTLGATLVLSF-------SIGLALTLVTVGVGAAISVQQAAKRWSGFNTLARRAPYFSSLLIGLVGVYMGV  271 (279)
T ss_pred             HHHHHHhchHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45555666655555555443       25888888888888766666666666  455666   9999999999999988


Q ss_pred             ccc
Q 030301          175 SPV  177 (179)
Q Consensus       175 ~~~  177 (179)
                      +.+
T Consensus       272 ~~~  274 (279)
T PRK10019        272 HGF  274 (279)
T ss_pred             HHH
Confidence            764

>PRK10958 leucine export protein LeuE; Provisional

Probab=90.61  E-value=8.4  Score=31.58  Aligned_cols=21  Identities=19%  Similarity=0.110  Sum_probs=18.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhcc
Q 030301          155 KIVALSGGVLFIVFGIQSFLS  175 (179)
Q Consensus       155 ~~i~~~~g~lFl~fg~~~l~~  175 (179)
                      ++++++.|++|+.+|++++.+
T Consensus       190 ~~i~~~~g~~l~~~~i~l~~~  210 (212)
T PRK10958        190 AGGNSLVGLLFVGFAAKLATA  210 (212)
T ss_pred             HHHHHHHHHHHHHHHHHHhcc
Confidence            578999999999999988654

>PRK11111 hypothetical protein; Provisional

Probab=90.35  E-value=8.8  Score=32.10  Aligned_cols=38  Identities=16%  Similarity=0.108  Sum_probs=31.0

Q ss_pred             hHHHHHHhhhhhhh--hHHHHHHHHHHHHHHHHHHHhhhh
Q 030301            3 ILSAVVGWVAPNLI--SRKLTHHITTVLFFGFGLWSLWDA   40 (179)
Q Consensus         3 ~lsv~~G~~l~~~l--p~~~~~~~aa~lF~~FG~~~L~~~   40 (179)
                      ++..++|+++-+++  +..-.++..+++.+..|+.|++..
T Consensus        58 l~f~~~G~~iL~~fGIsl~afrIaGGiiL~~ial~Ml~g~   97 (214)
T PRK11111         58 LISLFLGDFILNLFGISIDSFRIAGGILVVTIAMSMISGK   97 (214)
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCCC
Confidence            45678888887654  666789999999999999999754

>TIGR00427 membrane protein, MarC family

Probab=89.89  E-value=5.3  Score=33.00  Aligned_cols=138  Identities=17%  Similarity=0.059  Sum_probs=73.6

Q ss_pred             hHHHHHHhhhhhhh--hHHHHHHHHHHHHHHHHHHHhhhhhcCCCChhhHHHHHHhhhhhhhhccccccCCCCCchHhhh
Q 030301            3 ILSAVVGWVAPNLI--SRKLTHHITTVLFFGFGLWSLWDAFSDGGEAEEFEEVEKKLDADFKANAGATKEGSKADDELKK   80 (179)
Q Consensus         3 ~lsv~~G~~l~~~l--p~~~~~~~aa~lF~~FG~~~L~~~~~~~~~~ee~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (179)
                      ++..++|.++-+++  +-.-.++..+++.+..|++|++...+.++.++|.++.+      +.++               .
T Consensus        55 l~f~~~G~~iL~~fgIsl~afrIaGGiiL~~ia~~ml~~~~~~~~~~~~~~~~~------~~~~---------------i  113 (201)
T TIGR00427        55 LIFLVFGDTILKLFGISIDAFRIAGGILLFTIAMDMLSGEGEDKQHKDEKEESA------EIDS---------------I  113 (201)
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCCCCccccccccccccc------cccC---------------e
Confidence            35567788776544  66678999999999999999976422111111100000      0000               0


Q ss_pred             hhchhhhhhhhHHHHHHHHHHHhcccCcHHHHHHHHHhcccCC---cEeehHHHHHHHHHHHHHHHHHHHHhhhcc---H
Q 030301           81 QRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENP---FGVVLGGIIGQALCTTAAVIGGKSLASQIS---E  154 (179)
Q Consensus        81 ~~~~~~~~~~~~~~~~af~~~flaE~GDKTQl~t~~Laa~~~~---~~V~~G~~~a~~l~t~lav~~G~~l~~~l~---~  154 (179)
                      ..-+         +..      --=-|.-|=-+.+.++.+++.   ....+.+.....+.+.+.-..++++.+++.   .
T Consensus       114 aivP---------La~------PllaGPGaIttvi~l~~~~~~~~~~~~~~~ai~~~~~~~~~~l~~s~~l~~~LG~~g~  178 (201)
T TIGR00427       114 AVVP---------LAL------PLIAGPGAITTTMVLGARASSIGYKFLVVLAIALVALITWLLFRYSAFIIRRLGRTGI  178 (201)
T ss_pred             eeee---------ccc------ccccCcHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            0000         000      000122222233333333221   112333444455566666666777777764   4


Q ss_pred             HHHHHHHHHHHHHHHHHHhccc
Q 030301          155 KIVALSGGVLFIVFGIQSFLSP  176 (179)
Q Consensus       155 ~~i~~~~g~lFl~fg~~~l~~~  176 (179)
                      +.+.++.|++-..+|+.++.++
T Consensus       179 ~il~Ri~GliL~aIaVq~i~~G  200 (201)
T TIGR00427       179 NVITRIMGLLLAAIAVEFIVTG  200 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcc
Confidence            6778999999999999887765

MarC is a protein that spans the plasma membrane multiple times and once was thought to be a multiple antibiotic resistance protein. The function for this family is unknown.

>PRK09304 arginine exporter protein; Provisional

Probab=89.49  E-value=10  Score=30.86  Aligned_cols=24  Identities=17%  Similarity=0.272  Sum_probs=20.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHhcccc
Q 030301          154 EKIVALSGGVLFIVFGIQSFLSPV  177 (179)
Q Consensus       154 ~~~i~~~~g~lFl~fg~~~l~~~~  177 (179)
                      .++++++.|++++.+|++.+.++.
T Consensus       180 ~~~in~~~g~~l~~~~~~l~~~~~  203 (207)
T PRK09304        180 QRIINLFVGCVMWFIALQLARQGI  203 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhh
Confidence            368889999999999999987754

>PF02659 DUF204: Domain of unknown function DUF; InterPro: IPR003810 Uncharacterised domain in proteins of unknown function

Probab=87.07  E-value=1.9  Score=29.06  Aligned_cols=37  Identities=24%  Similarity=0.390  Sum_probs=30.1

Q ss_pred             HHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHH
Q 030301          132 IGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFG  169 (179)
Q Consensus       132 ~a~~l~t~lav~~G~~l~~~l~~~~i~~~~g~lFl~fg  169 (179)
                      .-..+++.++...|+.+.+++ .++.+++++++++++|
T Consensus        31 ~~~~~~~~~G~~~G~~~~~~~-~~~~~~igg~iLi~iG   67 (67)
T PF02659_consen   31 IFQFIMPLLGLLLGRRLGRFI-GSYAEWIGGIILIFIG   67 (67)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHC
Confidence            345678888999999998855 5779999999998875

>PRK10520 rhtB homoserine/homoserine lactone efflux protein; Provisional

Probab=86.89  E-value=15  Score=29.66  Aligned_cols=22  Identities=23%  Similarity=0.193  Sum_probs=18.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHhcc
Q 030301          154 EKIVALSGGVLFIVFGIQSFLS  175 (179)
Q Consensus       154 ~~~i~~~~g~lFl~fg~~~l~~  175 (179)
                      .++++++.|.+|+.+|++++.+
T Consensus       182 ~~~i~~~~g~~li~~~~~l~~~  203 (205)
T PRK10520        182 MKALNKIFGSLFMLVGALLASA  203 (205)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhc
Confidence            4678899999999999988764

>PF03239 FTR1: Iron permease FTR1 family; InterPro: IPR004923 The Saccharomyces cerevisiae (Baker's yeast) iron permease FTR1 is a plasma membrane permease for high-affinity iron uptake

Probab=86.83  E-value=20  Score=31.22  Aligned_cols=81  Identities=26%  Similarity=0.305  Sum_probs=55.1

Q ss_pred             hHHHHHHHHHHHhcccCcHHHHHHHHHhcccC--CcEeehHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHH
Q 030301           91 SPIFLKAFSITFFGEWGDKSQLATIGLAADEN--PFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVF  168 (179)
Q Consensus        91 ~~~~~~af~~~flaE~GDKTQl~t~~Laa~~~--~~~V~~G~~~a~~l~t~lav~~G~~l~~~l~~~~i~~~~g~lFl~f  168 (179)
                      +..+..+|+ +.+=| |=-|=+.-.++.+..+  ...+..|+..|.++..+++.++-+.. .++|.+..-...+++-++.
T Consensus       133 ~~l~~~afl-~vlRE-G~E~vLfl~a~~~~~~~~~~~~~~g~~~G~~~a~~~~~~~~~~~-~~i~~~~~f~~~~~~ll~~  209 (306)
T PF03239_consen  133 WALFLLAFL-IVLRE-GLEAVLFLAALAASLRKDAASILLGAILGIAAAVVLGWLLYRGL-IRISLRSFFIITGVLLLLI  209 (306)
T ss_pred             hHHHHHHHH-HHHHh-hHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHH-HhcChHHHHHHHHHHHHHH
Confidence            356677774 33344 5556566666665533  67888999999999888888886654 5689888877777765555


Q ss_pred             HHHHhc
Q 030301          169 GIQSFL  174 (179)
Q Consensus       169 g~~~l~  174 (179)
                      +..+++
T Consensus       210 aa~L~~  215 (306)
T PF03239_consen  210 AAGLLG  215 (306)
T ss_pred             HHHHHH
Confidence            554443

Also included in this family are bacterial hypothetical integral membrane proteins.; GO: 0055085 transmembrane transport, 0016020 membrane

>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional

Probab=84.75  E-value=37  Score=32.29  Aligned_cols=33  Identities=15%  Similarity=0.105  Sum_probs=22.5

Q ss_pred             HHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHh
Q 030301            5 SAVVGWVAPNLISRKLTHHITTVLFFGFGLWSL   37 (179)
Q Consensus         5 sv~~G~~l~~~lp~~~~~~~aa~lF~~FG~~~L   37 (179)
                      +..+|..+...+-..+..+..+++|++||+.|+
T Consensus       230 a~~~G~~~~~~~q~~~~~~~~~~l~v~lgL~~~  262 (571)
T PRK00293        230 VAAAGLQFQAALQHPYVLIGLSILFVLLALSMF  262 (571)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHh
Confidence            334454443334445777888999999999886

>PF03596 Cad: Cadmium resistance transporter; InterPro: IPR004676 These proteins are members of the Cadmium Resistance (CadD) Family

Probab=82.81  E-value=9.6  Score=31.50  Aligned_cols=56  Identities=21%  Similarity=0.287  Sum_probs=48.0

Q ss_pred             cCCcEeehHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHhcccc
Q 030301          121 ENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSPV  177 (179)
Q Consensus       121 ~~~~~V~~G~~~a~~l~t~lav~~G~~l~~~l~~~~i~~~~g~lFl~fg~~~l~~~~  177 (179)
                      .+++.+.+|-.+|..+--..+..++..+. .+|+.|+--.-|++=+.+|++.+++..
T Consensus        23 ~~~~~I~~GqylG~~~Lv~~Sl~~~~~l~-~ip~~wiLGlLGliPI~lGi~~l~~~~   78 (191)
T PF03596_consen   23 FRRRQIVIGQYLGFTILVLASLLGAFGLL-FIPPEWILGLLGLIPIYLGIKALFSGE   78 (191)
T ss_pred             CChhhhhhhHHHHHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            35789999999999888888888777764 899999988899999999999887654

To date, this family of proteins has only been found in Gram-positive bacteria. The CadD family includes two close orthologues in two Staphylococcus species that have been reported to function in cadmium resistance, and another staphylococcal protein that has been reported to possibly function in quaternary ammonium ion export.

>PRK10739 putative antibiotic transporter; Provisional

Probab=82.45  E-value=14  Score=30.52  Aligned_cols=38  Identities=5%  Similarity=0.113  Sum_probs=30.0

Q ss_pred             hHHHHHHhhhhhhh--hHHHHHHHHHHHHHHHHHHHhhhh
Q 030301            3 ILSAVVGWVAPNLI--SRKLTHHITTVLFFGFGLWSLWDA   40 (179)
Q Consensus         3 ~lsv~~G~~l~~~l--p~~~~~~~aa~lF~~FG~~~L~~~   40 (179)
                      ++..++|+.+-+++  +..-.++..+++.+..|+.|+++.
T Consensus        52 l~f~~~G~~iL~~fGIsl~afrIAGGilL~~ial~ml~~~   91 (197)
T PRK10739         52 LVFLFAGEKILAFLNLRTETVSISGGIILFLIAIKMIFPS   91 (197)
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcCC
Confidence            35567788776644  677789999999999999999764

>COG2095 MarC Multiple antibiotic transporter [Intracellular trafficking and secretion]

Probab=81.06  E-value=13  Score=31.00  Aligned_cols=134  Identities=16%  Similarity=0.113  Sum_probs=82.2

Q ss_pred             HHHHHHhhhhhh--hhHHHHHHHHHHHHHHHHHHHhhhhhcCCCChhhHHHHHHhhhhhhhhccccccCCCCCchHhhhh
Q 030301            4 LSAVVGWVAPNL--ISRKLTHHITTVLFFGFGLWSLWDAFSDGGEAEEFEEVEKKLDADFKANAGATKEGSKADDELKKQ   81 (179)
Q Consensus         4 lsv~~G~~l~~~--lp~~~~~~~aa~lF~~FG~~~L~~~~~~~~~~ee~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (179)
                      +...+|..+-++  ++..-.++..+++-+..|++|+.+..+.++.+.  ||.+   ++    +-              . 
T Consensus        56 ~f~~~G~~il~~fgIsi~a~rIAGGilLf~ia~~ml~~~~~~~~~~~--e~~~---~~----~i--------------a-  111 (203)
T COG2095          56 VFLLLGEGILRFFGISIDAFRIAGGILLFLIALRMLFGPTSRPKKKR--EEGQ---ED----SI--------------A-  111 (203)
T ss_pred             HHHHHHHHHHHHhCCchhHHHHhhhHHHHHHHHHHhcCCcCcCCCCc--ccCc---cC----Ce--------------e-
Confidence            456677777653  477788999999999999999997653221110  0000   00    00              0 


Q ss_pred             hchhhhhhhhHHHHHHHHHHHhcccCcHHHHHHHHHhcccC-CcEeehHHHHHHHHHHHHHHHHHHHHhhhc---cHHHH
Q 030301           82 RRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADEN-PFGVVLGGIIGQALCTTAAVIGGKSLASQI---SEKIV  157 (179)
Q Consensus        82 ~~~~~~~~~~~~~~~af~~~flaE~GDKTQl~t~~Laa~~~-~~~V~~G~~~a~~l~t~lav~~G~~l~~~l---~~~~i  157 (179)
                      .-         ++..-      -=-|+-|-=+++.++.+++ ...+.+++.+...+.+.+.-.....+.+++   ..+.+
T Consensus       112 iv---------PLA~P------liaGPg~Ist~i~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~s~~i~r~lG~~G~~~~  176 (203)
T COG2095         112 IV---------PLAIP------LIAGPGTIATVIVLSSQYGNSKLAVVLAILLASLLTYLILLSSSRIMRLLGKTGLNAL  176 (203)
T ss_pred             ee---------cccCc------cccCcHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            00         00000      1125555556666776654 345556666666666677777777776665   46688


Q ss_pred             HHHHHHHHHHHHHHHhccc
Q 030301          158 ALSGGVLFIVFGIQSFLSP  176 (179)
Q Consensus       158 ~~~~g~lFl~fg~~~l~~~  176 (179)
                      .++-|++-..+|+.+..++
T Consensus       177 ~RimGllL~al~vq~i~~G  195 (203)
T COG2095         177 TRIMGLLLAALGVQMILDG  195 (203)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            8999999999999877654

>PRK10323 cysteine/O-acetylserine exporter; Provisional

Probab=80.72  E-value=28  Score=28.03  Aligned_cols=35  Identities=9%  Similarity=0.152  Sum_probs=24.2

Q ss_pred             HHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHhc
Q 030301          138 TTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFL  174 (179)
Q Consensus       138 t~lav~~G~~l~~~l~~~~i~~~~g~lFl~fg~~~l~  174 (179)
                      ...+....+.+.+  ..++++++.|.+|+.+|+++.|
T Consensus       161 ~~~~~~~~~~~~~--~~~~i~~~~g~~l~~~a~~l~~  195 (195)
T PRK10323        161 ALAGHLFQRLFRQ--YGRQLNIVLALLLVYCAVRIFY  195 (195)
T ss_pred             HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhC
Confidence            3333344444432  4578999999999999998765

>PF02659 DUF204: Domain of unknown function DUF; InterPro: IPR003810 Uncharacterised domain in proteins of unknown function

Probab=80.18  E-value=2.4  Score=28.51  Aligned_cols=32  Identities=16%  Similarity=0.274  Sum_probs=25.4

Q ss_pred             ChhHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Q 030301            1 MTILSAVVGWVAPNLISRKLTHHITTVLFFGFG   33 (179)
Q Consensus         1 MT~lsv~~G~~l~~~lp~~~~~~~aa~lF~~FG   33 (179)
                      |+.++..+|+.+.+ ...++.+|++++++++.|
T Consensus        36 ~~~~G~~~G~~~~~-~~~~~~~~igg~iLi~iG   67 (67)
T PF02659_consen   36 MPLLGLLLGRRLGR-FIGSYAEWIGGIILIFIG   67 (67)
T ss_pred             HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHC
Confidence            56788888888887 455779999999987765

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00