Citrus Sinensis ID: 030364

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------18
Protein Sequence
MARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIGDCTECFSLQT
Secondary Structure (PSIPRED)
ccccccccEEEEEEEEccccccHHHHHHHHHcccccccccccccEEEEccEEEEccEEEEEEEEEccccccccccccHHHccccEEEEEEEcccHHHHHHHHHHHHHHHHccccccEEEEEEEcccccccccccHHHHHHHHHHcccEEEEccccccccHHHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
ccccccccEEEEEEEEccccccHHHHHHHHHHccccccccccccEEEEEEEEEEccEEEEEEEEEEcccHHHHHHHHHHHccccEEEEEEEcccHHHHHcHHHHHHHHHHHcccccEEEEEEEcccccccccccHHHHHHHHHHHccEEEEcEccccEcHHHHHHHHHHHHcEEEEcc
Coil and Loop (DISEMBL)
martsnknIQVKLVLLgdmgtgktSLVLRFVKgqffdfqestigaAFFTQVLSLNEVTIkfdiwdtagqeryhslapmyyrGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEigdctecfslqt
Flexible Loop (DISEMBL)
martsnkniqvklvllgdmgtgKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQElqrqgnpnlIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIGDCTECFSLQT
Low Complexity Region (SEG)
MARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGaaaavvvYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIGDCTECFSLQT
Disordered region (IsUnstruct)
********IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDL******************GLSFLETSAKSAHNVNELFYEIGDCTECFS***
Disordered Region (DISOPRED)
******K***VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIGDCTECF****
Disordered Region (DISEMBL)
MARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIGDCTECFSLQT
Disordered Region (DISPRO)
****SNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIGDCTECFSLQT
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIGDCTECFSLQT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	178	2.2.26 [Sep-21-2011]
P31583	200	Ras-related protein RHN1	N/A	no	0.943	0.84	0.726	3e-72
P29687	200	Ras-related protein Rab5	N/A	no	0.943	0.84	0.714	9e-71
P31582	200	Ras-related protein RABF2	yes	no	0.943	0.84	0.714	1e-69
Q9SN68	200	Ras-related protein RABF2	no	no	0.943	0.84	0.702	3e-68
Q86JP3	201	Ras-related protein Rab-5	yes	no	0.921	0.815	0.676	3e-63
Q58DS9	216	Ras-related protein Rab-5	yes	no	0.910	0.75	0.654	3e-60
P35278	216	Ras-related protein Rab-5	yes	no	0.910	0.75	0.654	3e-60
P51147	216	Ras-related protein Rab-5	yes	no	0.915	0.754	0.650	3e-60
Q5R7L7	216	Ras-related protein Rab-5	yes	no	0.910	0.75	0.654	4e-60
P51148	216	Ras-related protein Rab-5	yes	no	0.910	0.75	0.654	4e-60

>sp|P31583|RHN1_NICPL Ras-related protein RHN1 OS=Nicotiana plumbaginifolia GN=RHN1 PE=2 SV=1

 Score =  270 bits (691), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 122/168 (72%), Positives = 144/168 (85%)

Query: 1   MARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIK 60
           MA +S+ N+  KLVLLGDMG GK+SLV+RFVKGQF +FQESTIGAAFF+  L++N  T+K
Sbjct: 1   MASSSHNNLNAKLVLLGDMGAGKSSLVIRFVKGQFLEFQESTIGAAFFSSTLAVNNATVK 60

Query: 61  FDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFL 120
           F+IWDTAGQERYHSLAPMYYRGAAAA++VYDITS DSF RAKKWVQELQ+QGNPN++M L
Sbjct: 61  FEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITSSDSFARAKKWVQELQKQGNPNMVMAL 120

Query: 121 VANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIG 168
             NK DLE++RKV  EE  LYA+ENGL F+ETSAK+A NVN +FYEI 
Sbjct: 121 AGNKADLEDRRKVTAEEARLYAEENGLFFMETSAKTAVNVNAIFYEIA 168

Protein transport. Probably involved in vesicular traffic.
Nicotiana plumbaginifolia (taxid: 4092)

>sp|P29687|RAB5_TOBAC Ras-related protein Rab5 OS=Nicotiana tabacum GN=RAB5 PE=2 SV=1

 Score =  265 bits (678), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 120/168 (71%), Positives = 142/168 (84%)

Query: 1   MARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIK 60
           MA   + N+  KLVLLGDMG GK+SLV+RFVKGQF +FQESTIGAAFF+  +S+N  T+K
Sbjct: 1   MASRRHNNLNAKLVLLGDMGAGKSSLVIRFVKGQFLEFQESTIGAAFFSSTVSVNNATVK 60

Query: 61  FDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFL 120
           F+IWDTAGQERYHSLAPMYYRGAAAA++VYDITS +S  RAKKWVQELQ+QGNPN++M L
Sbjct: 61  FEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITSTESLARAKKWVQELQKQGNPNMVMAL 120

Query: 121 VANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIG 168
             NK DLE+KRKV  EE  LYA+ENGL F+ETSAK+A NVN++FYEI 
Sbjct: 121 AGNKADLEDKRKVTAEEARLYAEENGLFFMETSAKTATNVNDIFYEIA 168

Protein transport. Probably involved in vesicular traffic.

Nicotiana tabacum (taxid: 4097)

>sp|P31582|RAF2A_ARATH Ras-related protein RABF2a OS=Arabidopsis thaliana GN=RABF2A PE=1 SV=1

 Score =  262 bits (669), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 120/168 (71%), Positives = 142/168 (84%)

Query: 1   MARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIK 60
           MA + NKNI  KLVLLGD+G GK+SLVLRFVK QF +FQESTIGAAFF+Q L++N+ T+K
Sbjct: 1   MASSGNKNINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVK 60

Query: 61  FDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFL 120
           F+IWDTAGQERYHSLAPMYYRGAAAA++V+DIT+  SFERAKKWVQELQ QGNPN++M L
Sbjct: 61  FEIWDTAGQERYHSLAPMYYRGAAAAIIVFDITNQASFERAKKWVQELQAQGNPNMVMAL 120

Query: 121 VANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIG 168
             NK DL + RKV  EE E+YAQEN L F+ETSAK+A NV ++FYEI 
Sbjct: 121 AGNKADLLDARKVSAEEAEIYAQENSLFFMETSAKTATNVKDIFYEIA 168

Involved in the trafficking of soluble cargo proteins from the prevacuolar compartment to the central vacuole.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SN68|RAF2B_ARATH Ras-related protein RABF2b OS=Arabidopsis thaliana GN=RABF2B PE=1 SV=1

 Score =  257 bits (657), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 118/168 (70%), Positives = 141/168 (83%)

Query: 1   MARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIK 60
           MA   NK+I  KLVLLGD+G GK+SLVLRFVK QF +FQESTIGAAFF+Q L++N+ T+K
Sbjct: 1   MAAAGNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVK 60

Query: 61  FDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFL 120
           F+IWDTAGQERYHSLAPMYYRGAAAA++V+D+T+  SFERAKKWVQELQ QGNPN++M L
Sbjct: 61  FEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMAL 120

Query: 121 VANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIG 168
             NK DL + RKV  E+ + YAQENGL F+ETSAK+A NV E+FYEI 
Sbjct: 121 AGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIA 168

Endosomal protein that may be involved in endocytosis.

Arabidopsis thaliana (taxid: 3702)

>sp|Q86JP3|RAB5A_DICDI Ras-related protein Rab-5A OS=Dictyostelium discoideum GN=rab5A PE=3 SV=1

 Score =  240 bits (613), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 111/164 (67%), Positives = 134/164 (81%)

Query: 5   SNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIW 64
           +NK  Q KLVLLG+   GK+SLVLRFV+G F D+QESTIGAAF  Q + LN+ T+KF+IW
Sbjct: 4   NNKIFQFKLVLLGEAAVGKSSLVLRFVRGHFLDYQESTIGAAFLAQTVCLNDTTVKFEIW 63

Query: 65  DTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANK 124
           DTAGQERYH+LAPMYYRGA AA+VVYDI S DSFERA KWV+ELQRQG+PN+++ L  NK
Sbjct: 64  DTAGQERYHTLAPMYYRGAQAAIVVYDIRSEDSFERAIKWVKELQRQGSPNIVIALAGNK 123

Query: 125 VDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIG 168
           +DL  KRKV+  E + YA+ENGL F+ETSAK++ NVNELF EI 
Sbjct: 124 LDLAAKRKVETAEAQQYAEENGLLFMETSAKTSQNVNELFVEIA 167

Required for the fusion of plasma membranes and early endosomes.

Dictyostelium discoideum (taxid: 44689)

>sp|Q58DS9|RAB5C_BOVIN Ras-related protein Rab-5C OS=Bos taurus GN=RAB5C PE=2 SV=1

 Score =  231 bits (588), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 106/162 (65%), Positives = 131/162 (80%)

Query: 6   NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWD 65
           NK  Q KLVLLG+   GK+SLVLRFVKGQF ++QESTIGAAF TQ + L++ T+KF+IWD
Sbjct: 17  NKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWD 76

Query: 66  TAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKV 125
           TAGQERYHSLAPMYYRGA AA+VVYDIT+ D+F RAK WV+ELQRQ +PN+++ L  NK 
Sbjct: 77  TAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKA 136

Query: 126 DLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
           DL  KR V+ +E + YA++N L F+ETSAK+A NVNE+F  I
Sbjct: 137 DLASKRAVEFQEAQAYAEDNSLLFMETSAKTAMNVNEIFMAI 178

Protein transport. Probably involved in vesicular traffic.

Bos taurus (taxid: 9913)

>sp|P35278|RAB5C_MOUSE Ras-related protein Rab-5C OS=Mus musculus GN=Rab5c PE=1 SV=2

 Score =  230 bits (587), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 106/162 (65%), Positives = 130/162 (80%)

Query: 6   NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWD 65
           NK  Q KLVLLG+   GK+SLVLRFVKGQF ++QESTIGAAF TQ + L++ T+KF+IWD
Sbjct: 17  NKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWD 76

Query: 66  TAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKV 125
           TAGQERYHSLAPMYYRGA AA+VVYDIT+ D+F RAK WV+ELQRQ +PN+++ L  NK 
Sbjct: 77  TAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKA 136

Query: 126 DLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
           DL  KR V+ +E + YA +N L F+ETSAK+A NVNE+F  I
Sbjct: 137 DLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAI 178

Protein transport. Probably involved in vesicular traffic.

Mus musculus (taxid: 10090)

>sp|P51147|RAB5C_CANFA Ras-related protein Rab-5C OS=Canis familiaris GN=RAB5C PE=2 SV=1

 Score =  230 bits (587), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 106/163 (65%), Positives = 130/163 (79%)

Query: 6   NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWD 65
           NK  Q KLVLLG+   GK+SLVLRFVKGQF ++QESTIGAAF TQ + L++ T+KF+IWD
Sbjct: 17  NKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWD 76

Query: 66  TAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKV 125
           TAGQERYHSLAPMYYRGA AA+VVYDIT+ D+F RAK WV+ELQRQ +PN+++ L  NK 
Sbjct: 77  TAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKA 136

Query: 126 DLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIG 168
           DL  KR V+ +E + YA +N L F+ETSAK+A NVNE+F  I 
Sbjct: 137 DLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIA 179

Protein transport. Probably involved in vesicular traffic.

Canis familiaris (taxid: 9615)

>sp|Q5R7L7|RAB5C_PONAB Ras-related protein Rab-5C OS=Pongo abelii GN=RAB5C PE=2 SV=1

 Score =  230 bits (586), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 106/162 (65%), Positives = 130/162 (80%)

Query: 6   NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWD 65
           NK  Q KLVLLG+   GK+SLVLRFVKGQF ++QESTIGAAF TQ + L++ T+KF+IWD
Sbjct: 17  NKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWD 76

Query: 66  TAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKV 125
           TAGQERYHSLAPMYYRGA AA+VVYDIT+ D+F RAK WV+ELQRQ +PN+++ L  NK 
Sbjct: 77  TAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKA 136

Query: 126 DLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
           DL  KR V+ +E + YA +N L F+ETSAK+A NVNE+F  I
Sbjct: 137 DLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAI 178

Protein transport. Probably involved in vesicular traffic.

Pongo abelii (taxid: 9601)

>sp|P51148|RAB5C_HUMAN Ras-related protein Rab-5C OS=Homo sapiens GN=RAB5C PE=1 SV=2

 Score =  230 bits (586), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 106/162 (65%), Positives = 130/162 (80%)

Query: 6   NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWD 65
           NK  Q KLVLLG+   GK+SLVLRFVKGQF ++QESTIGAAF TQ + L++ T+KF+IWD
Sbjct: 17  NKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWD 76

Query: 66  TAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKV 125
           TAGQERYHSLAPMYYRGA AA+VVYDIT+ D+F RAK WV+ELQRQ +PN+++ L  NK 
Sbjct: 77  TAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKA 136

Query: 126 DLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
           DL  KR V+ +E + YA +N L F+ETSAK+A NVNE+F  I
Sbjct: 137 DLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAI 178

Protein transport. Probably involved in vesicular traffic.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	178
225445266	200	PREDICTED: ras-related protein RHN1 isof	0.938	0.835	0.898	2e-83
255546521	199	protein with unknown function [Ricinus c	0.943	0.844	0.892	5e-83
224142139	199	predicted protein [Populus trichocarpa]	0.943	0.844	0.880	5e-82
356511351	199	PREDICTED: ras-related protein RHN1-like	0.943	0.844	0.821	4e-77
224070895	200	predicted protein [Populus trichocarpa]	0.943	0.84	0.791	2e-76
356527789	199	PREDICTED: ras-related protein RHN1-like	0.943	0.844	0.815	9e-76
357521023	190	Ras-related protein Rab-5C [Medicago tru	0.870	0.815	0.851	5e-74
359482942	199	PREDICTED: ras-related protein RHN1-like	0.943	0.844	0.785	7e-74
168054193	201	Rab5/RabF-family small GTPase [Physcomit	0.938	0.830	0.754	1e-72
168034319	201	Rab5/RabF-family small GTPase [Physcomit	0.938	0.830	0.760	2e-72

>gi|225445266|ref|XP_002284542.1| PREDICTED: ras-related protein RHN1 isoform 1 [Vitis vinifera] gi|359484588|ref|XP_003633124.1| PREDICTED: ras-related protein RHN1 isoform 2 [Vitis vinifera] gi|297738837|emb|CBI28082.3| unnamed protein product [Vitis vinifera]

 Score =  313 bits (801), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 150/167 (89%), Positives = 157/167 (94%)

Query: 1   MARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIK 60
           MART NKNIQ KLVLLGDMGTGKTSLVLRFVKGQF+DFQESTIGAAFFTQVLSLNE TIK
Sbjct: 1   MARTGNKNIQAKLVLLGDMGTGKTSLVLRFVKGQFYDFQESTIGAAFFTQVLSLNEATIK 60

Query: 61  FDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFL 120
           FDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNL+M L
Sbjct: 61  FDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLLMIL 120

Query: 121 VANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
           VANK DLE KR+V+NE+GE YA+ENGL F ETSAK+A NVNELFYEI
Sbjct: 121 VANKADLETKREVENEKGEQYAKENGLLFFETSAKTAQNVNELFYEI 167

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255546521|ref|XP_002514320.1| protein with unknown function [Ricinus communis] gi|223546776|gb|EEF48274.1| protein with unknown function [Ricinus communis]

 Score =  311 bits (798), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 150/168 (89%), Positives = 156/168 (92%)

Query: 1   MARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIK 60
           MAR +NKNIQ KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNE TIK
Sbjct: 1   MARPNNKNIQAKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEATIK 60

Query: 61  FDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFL 120
           FDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITS DSFERAK+WV ELQRQGNPNLIMFL
Sbjct: 61  FDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSTDSFERAKRWVLELQRQGNPNLIMFL 120

Query: 121 VANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIG 168
            ANKVDL +KRKV +EEGE YA+ENGL FLETSAK+A NVNELFYEI 
Sbjct: 121 AANKVDLGDKRKVASEEGEQYAKENGLVFLETSAKTAQNVNELFYEIA 168

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142139|ref|XP_002324416.1| predicted protein [Populus trichocarpa] gi|222865850|gb|EEF02981.1| predicted protein [Populus trichocarpa]

 Score =  308 bits (789), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 148/168 (88%), Positives = 155/168 (92%)

Query: 1   MARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIK 60
           MART + NIQ KLVLLGDMGTGKTSLVLRFVKGQF +FQESTIGAAFFTQVLSLNE TIK
Sbjct: 1   MARTGSNNIQAKLVLLGDMGTGKTSLVLRFVKGQFLEFQESTIGAAFFTQVLSLNEATIK 60

Query: 61  FDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFL 120
           FDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWV ELQRQGNPNLIMFL
Sbjct: 61  FDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVTELQRQGNPNLIMFL 120

Query: 121 VANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIG 168
           V NKVDL++KRKV  EEGE YA+ENG+ FLETSAK+A NVNELFYEI 
Sbjct: 121 VGNKVDLQQKRKVGIEEGEQYAKENGMVFLETSAKTAQNVNELFYEIA 168

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356511351|ref|XP_003524390.1| PREDICTED: ras-related protein RHN1-like [Glycine max]

 Score =  292 bits (747), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 138/168 (82%), Positives = 153/168 (91%)

Query: 1   MARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIK 60
           MART NK++Q KLVLLGDMG GKTSLVLRFVKG+F ++QESTIGAAFFT VLSLNE T+K
Sbjct: 1   MARTRNKSLQAKLVLLGDMGAGKTSLVLRFVKGEFSEYQESTIGAAFFTHVLSLNEATVK 60

Query: 61  FDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFL 120
           FDIWDTAGQERYHSLAPMYYRGAAAA+VVYDITSMDSF RAKKWV+E+QRQ N +L MFL
Sbjct: 61  FDIWDTAGQERYHSLAPMYYRGAAAAIVVYDITSMDSFVRAKKWVREVQRQANSSLTMFL 120

Query: 121 VANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIG 168
           VANK DLE++RKV+ EEGE YA+ENGLSFLETSAK+A NVNELFYEI 
Sbjct: 121 VANKADLEDERKVRYEEGEEYAKENGLSFLETSAKTAQNVNELFYEIA 168

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224070895|ref|XP_002303285.1| predicted protein [Populus trichocarpa] gi|222840717|gb|EEE78264.1| predicted protein [Populus trichocarpa]

 Score =  290 bits (741), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 133/168 (79%), Positives = 152/168 (90%)

Query: 1   MARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIK 60
           MAR  NK IQ KLVLLGDMGTGKTSLVLRFVKGQFFD QE TIGAAFFTQ+LSL E T+K
Sbjct: 1   MARPGNKIIQAKLVLLGDMGTGKTSLVLRFVKGQFFDHQEPTIGAAFFTQILSLTEATVK 60

Query: 61  FDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFL 120
           FDIWDTAGQERYHSLAPMYYRGAAAAV+VYDI+SMD+F RAK+WVQELQRQGNP ++M L
Sbjct: 61  FDIWDTAGQERYHSLAPMYYRGAAAAVIVYDISSMDTFVRAKRWVQELQRQGNPKMVMAL 120

Query: 121 VANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIG 168
           VANK+DL+ KR+V+NE+GE ++QENG+ F+ETSAK+A N+NELFYEI 
Sbjct: 121 VANKLDLDSKREVQNEDGEQFSQENGMFFMETSAKTAQNINELFYEIA 168

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356527789|ref|XP_003532489.1| PREDICTED: ras-related protein RHN1-like [Glycine max]

 Score =  287 bits (735), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 137/168 (81%), Positives = 152/168 (90%)

Query: 1   MARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIK 60
           MART NK++Q KLVLLGDMG GKTSLVLRFVKG+F ++Q+STIGAAFFTQVLSLNE T+K
Sbjct: 1   MARTGNKSLQAKLVLLGDMGAGKTSLVLRFVKGEFSEYQDSTIGAAFFTQVLSLNEATVK 60

Query: 61  FDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFL 120
           FDIWDTAGQERYHSLAPMYYRGAAAA+VVYDITSMDSF RAKKWV+E+ RQGN   +MFL
Sbjct: 61  FDIWDTAGQERYHSLAPMYYRGAAAAIVVYDITSMDSFVRAKKWVREVLRQGNCQNVMFL 120

Query: 121 VANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIG 168
           VANK DLE +RKV+ EEGE YA+ENGLSFLETSAK+A NVNELFYEI 
Sbjct: 121 VANKADLEAERKVRYEEGEEYAKENGLSFLETSAKTAQNVNELFYEIA 168

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357521023|ref|XP_003630800.1| Ras-related protein Rab-5C [Medicago truncatula] gi|355524822|gb|AET05276.1| Ras-related protein Rab-5C [Medicago truncatula]

 Score =  281 bits (720), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 132/155 (85%), Positives = 144/155 (92%)

Query: 14  VLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYH 73
           VLLGDMGTGKTSLVLRFVKGQF ++QESTIGAAFFTQVLSLNE T+KFDIWDTAGQERYH
Sbjct: 5   VLLGDMGTGKTSLVLRFVKGQFSEYQESTIGAAFFTQVLSLNEATVKFDIWDTAGQERYH 64

Query: 74  SLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKV 133
           SLAPMYYRG+AAA+VVYDITSMDSF RAKKWV+E+QRQ NPNLIM LVANK DLE++RKV
Sbjct: 65  SLAPMYYRGSAAAIVVYDITSMDSFVRAKKWVREVQRQANPNLIMLLVANKADLEDQRKV 124

Query: 134 KNEEGELYAQENGLSFLETSAKSAHNVNELFYEIG 168
            NEEGE YA+ENG+SF ETSAK+A NVNELFYEI 
Sbjct: 125 GNEEGEEYAKENGMSFFETSAKTAQNVNELFYEIA 159

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482942|ref|XP_002284702.2| PREDICTED: ras-related protein RHN1-like [Vitis vinifera] gi|297743285|emb|CBI36152.3| unnamed protein product [Vitis vinifera]

 Score =  281 bits (719), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 132/168 (78%), Positives = 151/168 (89%)

Query: 1   MARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIK 60
           MAR SNKNIQ KLVL+GDMGTGKTSLVLRFVKGQFF+ QE TIGAAFFTQ+LSLNE T+K
Sbjct: 1   MARPSNKNIQAKLVLVGDMGTGKTSLVLRFVKGQFFEHQEPTIGAAFFTQLLSLNEATVK 60

Query: 61  FDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFL 120
           FDIWDTAGQERYHSLAPMYYRGAAAAVVVYDI+++D+F RAKKWVQELQ+QGN NL+M L
Sbjct: 61  FDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNVDTFVRAKKWVQELQKQGNKNLVMAL 120

Query: 121 VANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIG 168
           VANK DLE KR+V  +EGE  ++ENG+ F+ETSAK++ N+NELFYEI 
Sbjct: 121 VANKCDLESKREVNTQEGEKLSEENGMFFIETSAKTSLNINELFYEIA 168

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|168054193|ref|XP_001779517.1| Rab5/RabF-family small GTPase [Physcomitrella patens subsp. patens] gi|162669099|gb|EDQ55693.1| Rab5/RabF-family small GTPase [Physcomitrella patens subsp. patens]

 Score =  277 bits (709), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 126/167 (75%), Positives = 145/167 (86%)

Query: 1   MARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIK 60
           MA T   ++Q KLVLLGDMG GK+SL LRFVKGQFFD+QESTIGAAF TQ L++NE T+K
Sbjct: 1   MATTGANHMQAKLVLLGDMGAGKSSLALRFVKGQFFDYQESTIGAAFLTQTLAVNETTVK 60

Query: 61  FDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFL 120
           F+IWDTAGQERYHSLAPMYYRGAAAA++VYDIT+ DSF RAKKWVQELQRQGNPNL+M L
Sbjct: 61  FEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNSDSFGRAKKWVQELQRQGNPNLVMAL 120

Query: 121 VANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
             NK DL  KRK++ EEG+ YA+ENGL F+ETSAK++ NVNELFYEI
Sbjct: 121 AGNKADLSSKRKIEAEEGQSYAEENGLFFMETSAKTSQNVNELFYEI 167

Source: Physcomitrella patens subsp. patens

Species: Physcomitrella patens

Genus: Physcomitrella

Family: Funariaceae

Order: Funariales

Class: Bryopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|168034319|ref|XP_001769660.1| Rab5/RabF-family small GTPase [Physcomitrella patens subsp. patens] gi|162679009|gb|EDQ65461.1| Rab5/RabF-family small GTPase [Physcomitrella patens subsp. patens]

 Score =  276 bits (707), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 127/167 (76%), Positives = 144/167 (86%)

Query: 1   MARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIK 60
           MA T   + Q KLVLLGDMG GK+SL LRFV+GQFFD+QESTIGAAF TQ L++NE T+K
Sbjct: 1   MATTGANHTQAKLVLLGDMGAGKSSLSLRFVRGQFFDYQESTIGAAFLTQTLAVNETTVK 60

Query: 61  FDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFL 120
           F+IWDTAGQERYHSLAPMYYRGAAAA++VYDIT+ DSF RAKKWVQELQRQGNPNL+M L
Sbjct: 61  FEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNSDSFGRAKKWVQELQRQGNPNLVMAL 120

Query: 121 VANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
             NK DL  KRKV+ EEG+ YA+ENGL F+ETSAK+A NVNELFYEI
Sbjct: 121 AGNKADLSAKRKVEAEEGQSYAEENGLFFMETSAKTAQNVNELFYEI 167

Source: Physcomitrella patens subsp. patens

Species: Physcomitrella patens

Genus: Physcomitrella

Family: Funariaceae

Order: Funariales

Class: Bryopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	178
TAIR|locus:2153202	200	RHA1 "RAB homolog 1" [Arabidop	0.938	0.835	0.688	1.7e-59
TAIR|locus:2123010	200	ARA7 [Arabidopsis thaliana (ta	0.938	0.835	0.676	1.9e-58
DICTYBASE|DDB_G0271984	201	rab5A "Rab GTPase" [Dictyostel	0.915	0.810	0.650	2.1e-54
ZFIN|ZDB-GENE-031118-30	221	rab5c "RAB5C, member RAS oncog	0.932	0.751	0.620	7.2e-52
UNIPROTKB|Q58DS9	216	RAB5C "Ras-related protein Rab	0.910	0.75	0.623	9.2e-52
UNIPROTKB|F2Z560	216	RAB5C "Uncharacterized protein	0.910	0.75	0.623	9.2e-52
UNIPROTKB|P51147	216	RAB5C "Ras-related protein Rab	0.910	0.75	0.623	1.5e-51
UNIPROTKB|P51148	216	RAB5C "Ras-related protein Rab	0.910	0.75	0.623	1.5e-51
UNIPROTKB|Q5R7L7	216	RAB5C "Ras-related protein Rab	0.910	0.75	0.623	1.5e-51
MGI|MGI:105306	216	Rab5c "RAB5C, member RAS oncog	0.910	0.75	0.623	1.5e-51

TAIR|locus:2153202 RHA1 "RAB homolog 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 610 (219.8 bits), Expect = 1.7e-59, P = 1.7e-59
 Identities = 115/167 (68%), Positives = 135/167 (80%)

Query:     1 MARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIK 60
             MA + NKNI  KLVLLGD+G GK+SLVLRFVK QF +FQESTIGAAFF+Q L++N+ T+K
Sbjct:     1 MASSGNKNINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVK 60

Query:    61 FDIWDTAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFL 120
             F+IWDTAGQERYHSLAPMYYRG       +DIT+  SFERAKKWVQELQ QGNPN++M L
Sbjct:    61 FEIWDTAGQERYHSLAPMYYRGAAAAIIVFDITNQASFERAKKWVQELQAQGNPNMVMAL 120

Query:   121 VANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
               NK DL + RKV  EE E+YAQEN L F+ETSAK+A NV ++FYEI
Sbjct:   121 AGNKADLLDARKVSAEEAEIYAQENSLFFMETSAKTATNVKDIFYEI 167

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005774 "vacuolar membrane" evidence=IMP

GO:0007034 "vacuolar transport" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0010200 "response to chitin" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2123010 ARA7 [Arabidopsis thaliana (taxid:3702)]

 Score = 600 (216.3 bits), Expect = 1.9e-58, P = 1.9e-58
 Identities = 113/167 (67%), Positives = 134/167 (80%)

Query:     1 MARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIK 60
             MA   NK+I  KLVLLGD+G GK+SLVLRFVK QF +FQESTIGAAFF+Q L++N+ T+K
Sbjct:     1 MAAAGNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVK 60

Query:    61 FDIWDTAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFL 120
             F+IWDTAGQERYHSLAPMYYRG       +D+T+  SFERAKKWVQELQ QGNPN++M L
Sbjct:    61 FEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMAL 120

Query:   121 VANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
               NK DL + RKV  E+ + YAQENGL F+ETSAK+A NV E+FYEI
Sbjct:   121 AGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEI 167

GO:0005525 "GTP binding" evidence=IEA;ISS;IDA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005769 "early endosome" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005768 "endosome" evidence=IDA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

GO:0005783 "endoplasmic reticulum" evidence=IDA

DICTYBASE|DDB_G0271984 rab5A "Rab GTPase" [Dictyostelium discoideum (taxid:44689)]

 Score = 562 (202.9 bits), Expect = 2.1e-54, P = 2.1e-54
 Identities = 106/163 (65%), Positives = 128/163 (78%)

Query:     5 SNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIW 64
             +NK  Q KLVLLG+   GK+SLVLRFV+G F D+QESTIGAAF  Q + LN+ T+KF+IW
Sbjct:     4 NNKIFQFKLVLLGEAAVGKSSLVLRFVRGHFLDYQESTIGAAFLAQTVCLNDTTVKFEIW 63

Query:    65 DTAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANK 124
             DTAGQERYH+LAPMYYRG       YDI S DSFERA KWV+ELQRQG+PN+++ L  NK
Sbjct:    64 DTAGQERYHTLAPMYYRGAQAAIVVYDIRSEDSFERAIKWVKELQRQGSPNIVIALAGNK 123

Query:   125 VDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
             +DL  KRKV+  E + YA+ENGL F+ETSAK++ NVNELF EI
Sbjct:   124 LDLAAKRKVETAEAQQYAEENGLLFMETSAKTSQNVNELFVEI 166

GO:0015031 "protein transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0010008 "endosome membrane" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

ZFIN|ZDB-GENE-031118-30 rab5c "RAB5C, member RAS oncogene family" [Danio rerio (taxid:7955)]

 Score = 538 (194.4 bits), Expect = 7.2e-52, P = 7.2e-52
 Identities = 103/166 (62%), Positives = 124/166 (74%)

Query:     2 ARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKF 61
             A   NK  Q KLVLLG+   GK+SLVLRFVKGQF ++QESTIGAAF TQ L L++ T+KF
Sbjct:    14 APVGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTLCLDDTTVKF 73

Query:    62 DIWDTAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLV 121
             +IWDTAGQERYHSLAPMYYRG       YDIT+ D+F RAK WV+ELQRQ +PN+++ L 
Sbjct:    74 EIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFTRAKNWVKELQRQASPNIVIALA 133

Query:   122 ANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
              NK DL  KR V  +E + YA +N L F+ETSAK+A NVNE+F  I
Sbjct:   134 GNKADLANKRAVDFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAI 179

GO:0005525 "GTP binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0001702 "gastrulation with mouth forming second" evidence=IMP

GO:0016337 "cell-cell adhesion" evidence=IMP

GO:0030100 "regulation of endocytosis" evidence=IMP

GO:0001525 "angiogenesis" evidence=IMP

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005768 "endosome" evidence=IDA

UNIPROTKB|Q58DS9 RAB5C "Ras-related protein Rab-5C" [Bos taurus (taxid:9913)]

 Score = 537 (194.1 bits), Expect = 9.2e-52, P = 9.2e-52
 Identities = 101/162 (62%), Positives = 125/162 (77%)

Query:     6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWD 65
             NK  Q KLVLLG+   GK+SLVLRFVKGQF ++QESTIGAAF TQ + L++ T+KF+IWD
Sbjct:    17 NKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWD 76

Query:    66 TAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKV 125
             TAGQERYHSLAPMYYRG       YDIT+ D+F RAK WV+ELQRQ +PN+++ L  NK 
Sbjct:    77 TAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKA 136

Query:   126 DLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
             DL  KR V+ +E + YA++N L F+ETSAK+A NVNE+F  I
Sbjct:   137 DLASKRAVEFQEAQAYAEDNSLLFMETSAKTAMNVNEIFMAI 178

GO:0019003 "GDP binding" evidence=ISS

GO:0042470 "melanosome" evidence=IEA

GO:0031901 "early endosome membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0030139 "endocytic vesicle" evidence=IEA

GO:0030100 "regulation of endocytosis" evidence=IEA

GO:0007032 "endosome organization" evidence=IEA

GO:0005811 "lipid particle" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

UNIPROTKB|F2Z560 RAB5C "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 537 (194.1 bits), Expect = 9.2e-52, P = 9.2e-52
 Identities = 101/162 (62%), Positives = 125/162 (77%)

Query:     6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWD 65
             NK  Q KLVLLG+   GK+SLVLRFVKGQF ++QESTIGAAF TQ + L++ T+KF+IWD
Sbjct:    17 NKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWD 76

Query:    66 TAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKV 125
             TAGQERYHSLAPMYYRG       YDIT+ D+F RAK WV+ELQRQ +PN+++ L  NK 
Sbjct:    77 TAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKA 136

Query:   126 DLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
             DL  KR V+ +E + YA++N L F+ETSAK+A NVNE+F  I
Sbjct:   137 DLASKRAVEFQEAQAYAEDNSLLFMETSAKTAMNVNEIFMAI 178

GO:0030139 "endocytic vesicle" evidence=IEA

GO:0030100 "regulation of endocytosis" evidence=IEA

GO:0007032 "endosome organization" evidence=IEA

GO:0005811 "lipid particle" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

UNIPROTKB|P51147 RAB5C "Ras-related protein Rab-5C" [Canis lupus familiaris (taxid:9615)]

 Score = 535 (193.4 bits), Expect = 1.5e-51, P = 1.5e-51
 Identities = 101/162 (62%), Positives = 124/162 (76%)

Query:     6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWD 65
             NK  Q KLVLLG+   GK+SLVLRFVKGQF ++QESTIGAAF TQ + L++ T+KF+IWD
Sbjct:    17 NKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWD 76

Query:    66 TAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKV 125
             TAGQERYHSLAPMYYRG       YDIT+ D+F RAK WV+ELQRQ +PN+++ L  NK 
Sbjct:    77 TAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKA 136

Query:   126 DLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
             DL  KR V+ +E + YA +N L F+ETSAK+A NVNE+F  I
Sbjct:   137 DLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAI 178

GO:0019003 "GDP binding" evidence=ISS

GO:0042470 "melanosome" evidence=IEA

GO:0031901 "early endosome membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0030139 "endocytic vesicle" evidence=IEA

GO:0030100 "regulation of endocytosis" evidence=IEA

GO:0007032 "endosome organization" evidence=IEA

GO:0005811 "lipid particle" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

UNIPROTKB|P51148 RAB5C "Ras-related protein Rab-5C" [Homo sapiens (taxid:9606)]

 Score = 535 (193.4 bits), Expect = 1.5e-51, P = 1.5e-51
 Identities = 101/162 (62%), Positives = 124/162 (76%)

Query:     6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWD 65
             NK  Q KLVLLG+   GK+SLVLRFVKGQF ++QESTIGAAF TQ + L++ T+KF+IWD
Sbjct:    17 NKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWD 76

Query:    66 TAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKV 125
             TAGQERYHSLAPMYYRG       YDIT+ D+F RAK WV+ELQRQ +PN+++ L  NK 
Sbjct:    77 TAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKA 136

Query:   126 DLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
             DL  KR V+ +E + YA +N L F+ETSAK+A NVNE+F  I
Sbjct:   137 DLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAI 178

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0007032 "endosome organization" evidence=IEA

GO:0030100 "regulation of endocytosis" evidence=IEA

GO:0030139 "endocytic vesicle" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0031901 "early endosome membrane" evidence=IEA

GO:0042470 "melanosome" evidence=IEA

GO:0005811 "lipid particle" evidence=IDA

GO:0019003 "GDP binding" evidence=IDA

GO:0003924 "GTPase activity" evidence=TAS

GO:0006184 "GTP catabolic process" evidence=TAS

UNIPROTKB|Q5R7L7 RAB5C "Ras-related protein Rab-5C" [Pongo abelii (taxid:9601)]

 Score = 535 (193.4 bits), Expect = 1.5e-51, P = 1.5e-51
 Identities = 101/162 (62%), Positives = 124/162 (76%)

Query:     6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWD 65
             NK  Q KLVLLG+   GK+SLVLRFVKGQF ++QESTIGAAF TQ + L++ T+KF+IWD
Sbjct:    17 NKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWD 76

Query:    66 TAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKV 125
             TAGQERYHSLAPMYYRG       YDIT+ D+F RAK WV+ELQRQ +PN+++ L  NK 
Sbjct:    77 TAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKA 136

Query:   126 DLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
             DL  KR V+ +E + YA +N L F+ETSAK+A NVNE+F  I
Sbjct:   137 DLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAI 178

GO:0019003 "GDP binding" evidence=ISS

MGI|MGI:105306 Rab5c "RAB5C, member RAS oncogene family" [Mus musculus (taxid:10090)]

 Score = 535 (193.4 bits), Expect = 1.5e-51, P = 1.5e-51
 Identities = 101/162 (62%), Positives = 124/162 (76%)

Query:     6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWD 65
             NK  Q KLVLLG+   GK+SLVLRFVKGQF ++QESTIGAAF TQ + L++ T+KF+IWD
Sbjct:    17 NKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWD 76

Query:    66 TAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKV 125
             TAGQERYHSLAPMYYRG       YDIT+ D+F RAK WV+ELQRQ +PN+++ L  NK 
Sbjct:    77 TAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKA 136

Query:   126 DLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
             DL  KR V+ +E + YA +N L F+ETSAK+A NVNE+F  I
Sbjct:   137 DLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAI 178

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003924 "GTPase activity" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0005525 "GTP binding" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0005811 "lipid particle" evidence=ISO

GO:0005886 "plasma membrane" evidence=IEA

GO:0006184 "GTP catabolic process" evidence=TAS

GO:0006810 "transport" evidence=IEA

GO:0007032 "endosome organization" evidence=IDA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0019003 "GDP binding" evidence=ISO

GO:0030100 "regulation of endocytosis" evidence=IDA

GO:0030139 "endocytic vesicle" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P51148	RAB5C_HUMAN	No assigned EC number	0.6543	0.9101	0.75	yes	no
Q58DS9	RAB5C_BOVIN	No assigned EC number	0.6543	0.9101	0.75	yes	no
P51147	RAB5C_CANFA	No assigned EC number	0.6503	0.9157	0.7546	yes	no
P36586	YPT5_SCHPO	No assigned EC number	0.5941	0.9269	0.7819	yes	no
P35278	RAB5C_MOUSE	No assigned EC number	0.6543	0.9101	0.75	yes	no
Q9SN68	RAF2B_ARATH	No assigned EC number	0.7023	0.9438	0.84	no	no
Q86JP3	RAB5A_DICDI	No assigned EC number	0.6768	0.9213	0.8159	yes	no
Q5R7L7	RAB5C_PONAB	No assigned EC number	0.6543	0.9101	0.75	yes	no
P36017	VPS21_YEAST	No assigned EC number	0.5617	0.8932	0.7571	yes	no
P31583	RHN1_NICPL	No assigned EC number	0.7261	0.9438	0.84	N/A	no
P31582	RAF2A_ARATH	No assigned EC number	0.7142	0.9438	0.84	yes	no
P29687	RAB5_TOBAC	No assigned EC number	0.7142	0.9438	0.84	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	178
cd01860	163	cd01860, Rab5_related, Rab-related GTPase family i	1e-106
cd00154	159	cd00154, Rab, Ras-related in brain (Rab) family of	5e-80
pfam00071	162	pfam00071, Ras, Ras family	5e-80
smart00175	164	smart00175, RAB, Rab subfamily of small GTPases	1e-73
cd04123	162	cd04123, Rab21, Rab GTPase family 21 (Rab21)	2e-66
cd01861	161	cd01861, Rab6, Rab GTPase family 6 (Rab6)	2e-63
cd01868	165	cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-	1e-62
cd01869	166	cd01869, Rab1_Ypt1, Rab GTPase family 1 includes t	2e-55
cd01867	167	cd01867, Rab8_Rab10_Rab13_like, Rab GTPase familie	3e-55
cd01866	168	cd01866, Rab2, Rab GTPase family 2 (Rab2)	2e-53
cd01863	161	cd01863, Rab18, Rab GTPase family 18 (Rab18)	1e-51
cd04113	161	cd04113, Rab4, Rab GTPase family 4 (Rab4)	1e-50
cd04122	166	cd04122, Rab14, Rab GTPase family 14 (Rab14)	2e-50
cd01864	165	cd01864, Rab19, Rab GTPase family 19 (Rab19)	2e-49
cd00876	160	cd00876, Ras, Rat sarcoma (Ras) family of small gu	3e-49
PLN03108	210	PLN03108, PLN03108, Rab family protein; Provisiona	1e-48
PLN03110	216	PLN03110, PLN03110, Rab GTPase; Provisional	7e-48
cd04114	169	cd04114, Rab30, Rab GTPase family 30 (Rab30)	8e-47
cd01862	172	cd01862, Rab7, Rab GTPase family 7 (Rab7)	6e-45
cd04118	193	cd04118, Rab24, Rab GTPase family 24 (Rab24)	1e-43
cd04111	211	cd04111, Rab39, Rab GTPase family 39 (Rab39)	2e-43
smart00173	164	smart00173, RAS, Ras subfamily of RAS small GTPase	2e-41
smart00010	166	smart00010, small_GTPase, Small GTPase of the Ras	3e-41
cd04112	191	cd04112, Rab26, Rab GTPase family 26 (Rab26)	1e-39
cd04106	162	cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-	2e-38
cd04107	201	cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab1	2e-38
cd04115	170	cd04115, Rab33B_Rab33A, Rab GTPase family 33 inclu	4e-38
COG1100	219	COG1100, COG1100, GTPase SAR1 and related small G	4e-38
cd04117	164	cd04117, Rab15, Rab GTPase family 15 (Rab15)	7e-38
cd04110	199	cd04110, Rab35, Rab GTPase family 35 (Rab35)	7e-38
PTZ00099	176	PTZ00099, PTZ00099, rab6; Provisional	3e-36
cd04120	202	cd04120, Rab12, Rab GTPase family 12 (Rab12)	3e-36
cd01865	165	cd01865, Rab3, Rab GTPase family 3 contains Rab3A,	5e-35
PLN03118	211	PLN03118, PLN03118, Rab family protein; Provisiona	2e-34
cd04119	168	cd04119, RJL, Rab GTPase family J-like (RabJ-like)	6e-33
cd04145	164	cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3	1e-31
cd04124	161	cd04124, RabL2, Rab GTPase-like family 2 (Rab-like	1e-31
cd04138	162	cd04138, H_N_K_Ras_like, Ras GTPase family contain	2e-30
PTZ00369	189	PTZ00369, PTZ00369, Ras-like protein; Provisional	2e-30
cd04176	163	cd04176, Rap2, Rap2 family GTPase consists of Rap2	4e-30
cd04126	220	cd04126, Rab20, Rab GTPase family 20 (Rab20)	5e-30
cd00877	166	cd00877, Ran, Ras-related nuclear proteins (Ran)/T	1e-29
cd04139	163	cd04139, RalA_RalB, Ral (Ras-like) family containi	1e-29
cd04141	172	cd04141, Rit_Rin_Ric, Ras-like protein in all tiss	4e-29
cd04144	190	cd04144, Ras2, Rat sarcoma (Ras) family 2 of small	7e-29
cd04108	170	cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab3	1e-28
cd00157	171	cd00157, Rho, Ras homology family (Rho) of small g	3e-28
cd04109	213	cd04109, Rab28, Rab GTPase family 28 (Rab28)	4e-28
cd04127	180	cd04127, Rab27A, Rab GTPase family 27a (Rab27a)	6e-28
cd04116	170	cd04116, Rab9, Rab GTPase family 9 (Rab9)	1e-27
cd04175	164	cd04175, Rap1, Rap1 family GTPase consists of Rap1	2e-27
smart00174	174	smart00174, RHO, Rho (Ras homology) subfamily of R	2e-27
PTZ00132	215	PTZ00132, PTZ00132, GTP-binding nuclear protein Ra	2e-27
cd04136	164	cd04136, Rap_like, Rap-like family consists of Rap	7e-27
cd04140	165	cd04140, ARHI_like, A Ras homolog member I (ARHI)	9e-27
PLN03071	219	PLN03071, PLN03071, GTP-binding nuclear protein Ra	9e-27
cd04146	166	cd04146, RERG_RasL11_like, Ras-related and Estroge	2e-26
TIGR00231	162	TIGR00231, small_GTP, small GTP-binding protein do	3e-26
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	4e-26
cd04137	180	cd04137, RheB, Ras Homolog Enriched in Brain (RheB	1e-25
cd04132	197	cd04132, Rho4_like, Ras homology family 4 (Rho4) o	5e-25
smart00176	200	smart00176, RAN, Ran (Ras-related nuclear proteins	1e-24
cd04121	189	cd04121, Rab40, Rab GTPase family 40 (Rab40) conta	2e-24
cd01870	175	cd01870, RhoA_like, Ras homology family A (RhoA)-l	1e-22
cd04101	167	cd04101, RabL4, Rab GTPase-like family 4 (Rab-like	1e-22
cd04129	190	cd04129, Rho2, Ras homology family 2 (Rho2) of sma	2e-22
cd04134	185	cd04134, Rho3, Ras homology family 3 (Rho3) of sma	3e-22
cd04177	168	cd04177, RSR1, RSR1/Bud1p family GTPase	4e-22
cd04128	182	cd04128, Spg1, Septum-promoting GTPase (Spg1)	2e-21
cd04148	219	cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfam	3e-21
pfam08477	116	pfam08477, Miro, Miro-like protein	2e-20
cd04130	173	cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (W	3e-19
cd01893	168	cd01893, Miro1, Mitochondrial Rho family 1 (Miro1)	6e-19
cd04133	173	cd04133, Rop_like, Rho-related protein from plants	2e-18
cd04131	176	cd04131, Rnd, Rho family GTPase subfamily Rnd incl	2e-17
cd09914	161	cd09914, RocCOR, Ras of complex proteins (Roc) C-t	9e-16
cd04143	247	cd04143, Rhes_like, Ras homolog enriched in striat	2e-15
cd04147	197	cd04147, Ras_dva, Ras - dorsal-ventral anterior lo	3e-15
cd01871	174	cd01871, Rac1_like, Ras-related C3 botulinum toxin	4e-15
cd04172	182	cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases	6e-15
cd01875	191	cd01875, RhoG, Ras homolog family, member G (RhoG)	2e-14
cd04174	232	cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases	6e-14
cd04173	221	cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases	6e-14
cd00878	158	cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf	2e-13
cd01874	175	cd01874, Cdc42, cell division cycle 42 (Cdc42) is	3e-12
cd04159	159	cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl	4e-12
cd04142	198	cd04142, RRP22, Ras-related protein on chromosome	2e-11
cd04135	174	cd04135, Tc10, Rho GTPase TC10 (Tc10)	1e-10
cd04152	183	cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7)	4e-09
pfam00025	174	pfam00025, Arf, ADP-ribosylation factor family	5e-09
smart00177	175	smart00177, ARF, ARF-like small GTPases; ARF, ADP-	7e-09
cd04149	168	cd04149, Arf6, ADP ribosylation factor 6 (Arf6)	2e-08
PLN00023	334	PLN00023, PLN00023, GTP-binding protein; Provision	2e-08
cd04102	204	cd04102, RabL3, Rab GTPase-like family 3 (Rab-like	2e-07
cd04153	174	cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8)	2e-06
cd01887	169	cd01887, IF2_eIF5B, Initiation Factor 2 (IF2)/ euk	6e-06
cd04158	169	cd04158, ARD1, (ADP-ribosylation factor domain pro	1e-05
pfam04670	230	pfam04670, Gtr1_RagA, Gtr1/RagA G protein conserve	3e-05
cd01873	195	cd01873, RhoBTB, RhoBTB protein is an atypical mem	3e-05
cd04150	159	cd04150, Arf1_5_like, ADP-ribosylation factor-1 (A	4e-05
PTZ00133	182	PTZ00133, PTZ00133, ADP-ribosylation factor; Provi	8e-05
cd04155	174	cd04155, Arl3, Arf-like 3 (Arl3) GTPase	1e-04
cd04156	160	cd04156, ARLTS1, Arf-like tumor suppressor gene 1	1e-04
cd04162	164	cd04162, Arl9_Arfrp2_like, Arf-like 9 (Arl9)/Arfrp	2e-04
cd01898	170	cd01898, Obg, Obg GTPase	3e-04
TIGR03918	391	TIGR03918, GTP_HydF, [FeFe] hydrogenase H-cluster	7e-04
COG2229	187	COG2229, COG2229, Predicted GTPase [General functi	7e-04
cd04103	158	cd04103, Centaurin_gamma, Centaurin gamma (CENTG)	9e-04
cd04160	168	cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)	0.001
cd04151	158	cd04151, Arl1, ADP ribosylation factor 1 (Arf1)	0.002
PLN00223	181	PLN00223, PLN00223, ADP-ribosylation factor; Provi	0.002
cd00880	161	cd00880, Era_like, E	0.002
PRK13796	365	PRK13796, PRK13796, GTPase YqeH; Provisional	0.003
PRK12299	335	PRK12299, obgE, GTPase CgtA; Reviewed	0.003

>gnl|CDD|206653 cd01860, Rab5_related, Rab-related GTPase family includes Rab5 and Rab22; regulates early endosome fusion

 Score =  300 bits (770), Expect = e-106
 Identities = 107/160 (66%), Positives = 128/160 (80%)

Query: 10  QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ 69
           Q KLVLLGD   GK+S+VLRFVK +F + QESTIGAAF TQ ++L++ T+KF+IWDTAGQ
Sbjct: 1   QFKLVLLGDSSVGKSSIVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQ 60

Query: 70  ERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEE 129
           ERY SLAPMYYRGAAAA+VVYDITS +SFE+AK WV+ELQ  G PN+++ L  NK DLE 
Sbjct: 61  ERYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQEHGPPNIVIALAGNKADLES 120

Query: 130 KRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIGD 169
           KR+V  EE + YA ENGL F+ETSAK+  NVNELF EI  
Sbjct: 121 KRQVSTEEAQEYADENGLLFMETSAKTGENVNELFTEIAR 160

The Rab5-related subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases)

 Score =  234 bits (599), Expect = 5e-80
 Identities = 77/157 (49%), Positives = 109/157 (69%)

Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
            K+VL+GD G GKTSL+LRFV  +F +  +STIG  F ++ + ++   +K  IWDTAGQE
Sbjct: 1   FKIVLIGDSGVGKTSLLLRFVDNKFSENYKSTIGVDFKSKTIEVDGKKVKLQIWDTAGQE 60

Query: 71  RYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEK 130
           R+ S+   YYRGA  A++VYD+T+ +SFE   KW+ EL+    PN+ + LV NK DLE++
Sbjct: 61  RFRSITSSYYRGAHGAILVYDVTNRESFENLDKWLNELKEYAPPNIPIILVGNKSDLEDE 120

Query: 131 RKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
           R+V  EE + +A+ENGL F ETSAK+  NV+E F  +
Sbjct: 121 RQVSTEEAQQFAKENGLLFFETSAKTGENVDEAFESL 157

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159

>gnl|CDD|215692 pfam00071, Ras, Ras family

 Score =  234 bits (599), Expect = 5e-80
 Identities = 81/156 (51%), Positives = 111/156 (71%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           KLVL+GD G GK+SL++RF + +F +    TIG  F+T+ + ++  T+K  IWDTAGQER
Sbjct: 1   KLVLVGDGGVGKSSLLIRFTQNKFPEEYIPTIGVDFYTKTIEVDGKTVKLQIWDTAGQER 60

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           + +L P+YYRGA   ++VYDITS DSFE  KKW++E+ R  + N+ + LV NK DLE++R
Sbjct: 61  FRALRPLYYRGAQGFLLVYDITSRDSFENVKKWLEEILRHADENVPIVLVGNKCDLEDQR 120

Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
            V  EEGE  A+E GL F+ETSAK+  NV E F E+
Sbjct: 121 VVSTEEGEALAKELGLPFMETSAKTNENVEEAFEEL 156

Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162

>gnl|CDD|197555 smart00175, RAB, Rab subfamily of small GTPases

 Score =  218 bits (557), Expect = 1e-73
 Identities = 77/157 (49%), Positives = 111/157 (70%)

Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
            K++L+GD G GK+SL+ RF  G+F +  +STIG  F T+ + ++   +K  IWDTAGQE
Sbjct: 1   FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQE 60

Query: 71  RYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEK 130
           R+ S+   YYRGA  A++VYDIT+ +SFE  + W++EL+   +PN+++ LV NK DLEE+
Sbjct: 61  RFRSITSSYYRGAVGALLVYDITNRESFENLENWLKELREYASPNVVIMLVGNKSDLEEQ 120

Query: 131 RKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
           R+V  EE E +A+E+GL F ETSAK+  NV E F E+
Sbjct: 121 RQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEEL 157

Rab GTPases are implicated in vesicle trafficking. Length = 164

>gnl|CDD|133323 cd04123, Rab21, Rab GTPase family 21 (Rab21)

 Score =  199 bits (509), Expect = 2e-66
 Identities = 75/159 (47%), Positives = 105/159 (66%)

Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
            K+VLLG+   GKTSLVLR+V+ +F +  EST  A+FF + +++    I   IWDTAGQE
Sbjct: 1   FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQE 60

Query: 71  RYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEK 130
           RYH+L P+YYR A  A++VYDIT  DSF++ KKW++EL++    N+ + +V NK+DLE +
Sbjct: 61  RYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQ 120

Query: 131 RKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIGD 169
           R V   E E YA+  G    ETSAK+   + ELF  +  
Sbjct: 121 RVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAK 159

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206654 cd01861, Rab6, Rab GTPase family 6 (Rab6)

 Score =  192 bits (489), Expect = 2e-63
 Identities = 72/156 (46%), Positives = 107/156 (68%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           KLV LGD   GKTS++ RF+   F +  ++TIG  F ++ + +++ T++  +WDTAGQER
Sbjct: 2   KLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYVDDKTVRLQLWDTAGQER 61

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           + SL P Y R ++ AVVVYDIT+  SF+   KW+ +++ +   ++I+ LV NK DL +KR
Sbjct: 62  FRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKR 121

Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
           +V  EEGE  A+EN   F+ETSAK+ HNV +LF +I
Sbjct: 122 QVSTEEGEKKAKENNAMFIETSAKAGHNVKQLFKKI 157

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206660 cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-like includes Rab11a, Rab11b, and Rab25

 Score =  190 bits (485), Expect = 1e-62
 Identities = 72/156 (46%), Positives = 105/156 (67%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K+VL+GD G GK++L+ RF + +F    +STIG  F T+ + ++  TIK  IWDTAGQER
Sbjct: 5   KIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRTIQIDGKTIKAQIWDTAGQER 64

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           Y ++   YYRGA  A++VYDIT   +FE  ++W++EL+   + N+++ LV NK DL   R
Sbjct: 65  YRAITSAYYRGAVGALLVYDITKKSTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLR 124

Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
            V  EE + +A++NGLSF+ETSA    NV E F ++
Sbjct: 125 AVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQL 160

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206661 cd01869, Rab1_Ypt1, Rab GTPase family 1 includes the yeast homolog Ypt1

 Score =  172 bits (438), Expect = 2e-55
 Identities = 70/156 (44%), Positives = 99/156 (63%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           KL+L+GD G GK+ L+LRF    + +   STIG  F  + + L+  T+K  IWDTAGQER
Sbjct: 4   KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTVKLQIWDTAGQER 63

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           + ++   YYRGA   ++VYD+T  +SF   K+W+QE+ R  + N+   LV NK DL +K+
Sbjct: 64  FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKK 123

Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
            V   E + +A E G+ FLETSAK+A NV E F  +
Sbjct: 124 VVDYTEAKEFADELGIPFLETSAKNATNVEEAFMTM 159

Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|206659 cd01867, Rab8_Rab10_Rab13_like, Rab GTPase families 8, 10, 13 (Rab8, Rab10, Rab13)

 Score =  171 bits (436), Expect = 3e-55
 Identities = 73/156 (46%), Positives = 97/156 (62%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           KL+L+GD G GK+ L+LRF +  F     STIG  F  + + L+   IK  IWDTAGQER
Sbjct: 5   KLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQER 64

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           + ++   YYRGA   ++VYDIT   SFE  K W++ +    + ++   LV NK D+EEKR
Sbjct: 65  FRTITTSYYRGAMGIILVYDITDEKSFENIKNWMRNIDEHASEDVERMLVGNKCDMEEKR 124

Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
            V  EEGE  A+E G+ FLETSAK+  NV E F  +
Sbjct: 125 VVSKEEGEALAREYGIKFLETSAKANINVEEAFLTL 160

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 167

>gnl|CDD|206658 cd01866, Rab2, Rab GTPase family 2 (Rab2)

 Score =  167 bits (424), Expect = 2e-53
 Identities = 68/153 (44%), Positives = 103/153 (67%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K +++GD G GK+ L+L+F   +F    + TIG  F  ++++++   IK  IWDTAGQE 
Sbjct: 6   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQES 65

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           + S+   YYRGAA A++VYDIT  ++F     W+++ ++  N N+ + L+ NK DLE +R
Sbjct: 66  FRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRR 125

Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELF 164
           +V  EEGE +A+E+GL F+ETSAK+A NV E F
Sbjct: 126 EVSYEEGEAFAREHGLIFMETSAKTASNVEEAF 158

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 168

>gnl|CDD|206656 cd01863, Rab18, Rab GTPase family 18 (Rab18)

 Score =  162 bits (412), Expect = 1e-51
 Identities = 66/158 (41%), Positives = 101/158 (63%), Gaps = 2/158 (1%)

Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +K++L+GD G GK+SL+LRF    F +   STIG  F  + ++++   +K  IWDTAGQE
Sbjct: 1   LKILLIGDSGVGKSSLLLRFTDDTFDEDLSSTIGVDFKVKTVTVDGKKVKLAIWDTAGQE 60

Query: 71  RYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEE 129
           R+ +L   YYRGA   ++VYD+T  D+F+    W+ EL     NP+ +  LV NK+D E 
Sbjct: 61  RFRTLTSSYYRGAQGVILVYDVTRRDTFDNLDTWLNELDTYSTNPDAVKMLVGNKIDKEN 120

Query: 130 KRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
            R+V  EEG+ +A+++ + F+ETSAK+   V + F E+
Sbjct: 121 -REVTREEGQKFARKHNMLFIETSAKTRIGVQQAFEEL 157

Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206696 cd04113, Rab4, Rab GTPase family 4 (Rab4)

 Score =  159 bits (405), Expect = 1e-50
 Identities = 68/154 (44%), Positives = 101/154 (65%)

Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
            K +++G  GTGK+ L+ +F++ +F      TIG  F ++V+++   ++K  IWDTAGQE
Sbjct: 1   FKFLIIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKSVKLQIWDTAGQE 60

Query: 71  RYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEK 130
           R+ S+   YYRGAA A++VYDITS +SF     W+ + +   +P++++ LV NK DLE+ 
Sbjct: 61  RFRSVTRSYYRGAAGALLVYDITSRESFNALTNWLTDARTLASPDIVIILVGNKKDLEDD 120

Query: 131 RKVKNEEGELYAQENGLSFLETSAKSAHNVNELF 164
           R+V   E   +AQENGL FLETSA +  NV E F
Sbjct: 121 REVTFLEASRFAQENGLLFLETSALTGENVEEAF 154

Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|133322 cd04122, Rab14, Rab GTPase family 14 (Rab14)

 Score =  159 bits (404), Expect = 2e-50
 Identities = 69/155 (44%), Positives = 99/155 (63%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K +++GDMG GK+ L+ +F + +F      TIG  F T+++ +N   IK  IWDTAGQER
Sbjct: 4   KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQER 63

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           + ++   YYRGAA A++VYDIT   ++     W+ + +   NPN ++FL+ NK DLE +R
Sbjct: 64  FRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQR 123

Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYE 166
            V  EE + +A ENGL FLE SAK+  NV + F E
Sbjct: 124 DVTYEEAKQFADENGLLFLECSAKTGENVEDAFLE 158

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|133267 cd01864, Rab19, Rab GTPase family 19 (Rab19)

 Score =  156 bits (397), Expect = 2e-49
 Identities = 68/154 (44%), Positives = 96/154 (62%), Gaps = 1/154 (0%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K++L+GD   GKT +V RF  G F + Q +TIG  F  + L +    +K  IWDTAGQER
Sbjct: 5   KIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIQGKRVKLQIWDTAGQER 64

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           + ++   YYR A  A++ YDIT   SFE    W++E+++ G  N+++ L+ NK DLEE+R
Sbjct: 65  FRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQR 124

Query: 132 KVKNEEGELYAQENG-LSFLETSAKSAHNVNELF 164
           +V  EE    A+  G L+ LETSAK + NV E F
Sbjct: 125 EVLFEEACTLAEHYGILAVLETSAKESSNVEEAF 158

Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet characterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206642 cd00876, Ras, Rat sarcoma (Ras) family of small guanosine triphosphatases (GTPases)

 Score =  156 bits (396), Expect = 3e-49
 Identities = 65/157 (41%), Positives = 96/157 (61%), Gaps = 2/157 (1%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           KLV+LG  G GK++L +RFV G+F +  + TI  ++  Q+  ++  T   DI DTAGQE 
Sbjct: 1   KLVVLGAGGVGKSALTIRFVSGEFVEEYDPTIEDSYRKQI-VVDGETYTLDILDTAGQEE 59

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQ-GNPNLIMFLVANKVDLEEK 130
           + ++   Y R     ++VY ITS +SFE  K   +++ R     ++ + LV NK DLE +
Sbjct: 60  FSAMRDQYIRNGDGFILVYSITSRESFEEIKNIREQILRVKDKEDVPIVLVGNKCDLENE 119

Query: 131 RKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
           R+V  EEGE  A+E G  FLETSAK+  N++ELF  +
Sbjct: 120 RQVSTEEGEALAEEWGCPFLETSAKTNINIDELFNTL 156

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 160

>gnl|CDD|178655 PLN03108, PLN03108, Rab family protein; Provisional

 Score =  156 bits (395), Expect = 1e-48
 Identities = 66/153 (43%), Positives = 100/153 (65%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K +++GD G GK+ L+L+F   +F    + TIG  F  ++++++   IK  IWDTAGQE 
Sbjct: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES 67

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           + S+   YYRGAA A++VYDIT  ++F     W+++ ++  N N+ + L+ NK DL  +R
Sbjct: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 127

Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELF 164
            V  EEGE +A+E+GL F+E SAK+A NV E F
Sbjct: 128 AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 160

Length = 210

>gnl|CDD|178657 PLN03110, PLN03110, Rab GTPase; Provisional

 Score =  154 bits (391), Expect = 7e-48
 Identities = 69/156 (44%), Positives = 102/156 (65%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K+VL+GD G GK++++ RF + +F    +STIG  F T+ L +   T+K  IWDTAGQER
Sbjct: 14  KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER 73

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           Y ++   YYRGA  A++VYDIT   +F+  ++W++EL+   + N+++ +  NK DL   R
Sbjct: 74  YRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLR 133

Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
            V  E+G+  A++ GLSFLETSA  A NV + F  I
Sbjct: 134 SVAEEDGQALAEKEGLSFLETSALEATNVEKAFQTI 169

Length = 216

>gnl|CDD|133314 cd04114, Rab30, Rab GTPase family 30 (Rab30)

 Score =  150 bits (380), Expect = 8e-47
 Identities = 66/156 (42%), Positives = 98/156 (62%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K+VL+G+ G GKT LV RF +G F   Q +TIG  F  + + +    IK  IWDTAGQER
Sbjct: 9   KIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQER 68

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           + S+   YYR A A ++ YDIT  +SF    +W++E+++  N  +I  LV NK+DL E+R
Sbjct: 69  FRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERR 128

Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
           +V  +  E ++    + +LETSAK + NV +LF ++
Sbjct: 129 EVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDL 164

Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 169

>gnl|CDD|206655 cd01862, Rab7, Rab GTPase family 7 (Rab7)

 Score =  145 bits (369), Expect = 6e-45
 Identities = 66/161 (40%), Positives = 102/161 (63%), Gaps = 5/161 (3%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K+++LGD G GKTSL+ ++V  +F +  ++TIGA F T+ +++++  +   IWDTAGQER
Sbjct: 2   KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDRLVTLQIWDTAGQER 61

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNP----NLIMFLVANKVDL 127
           + SL   +YRGA   V+VYD+T+  SFE    W  E   Q +P    N    ++ NK+DL
Sbjct: 62  FQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPRDPENFPFVVLGNKIDL 121

Query: 128 EEKRKVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYEI 167
           EEKR+V  ++ + + +  G + + ETSAK A NV++ F  I
Sbjct: 122 EEKRQVSTKKAQQWCKSKGNIPYFETSAKEAINVDQAFETI 162

Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 172

>gnl|CDD|133318 cd04118, Rab24, Rab GTPase family 24 (Rab24)

 Score =  143 bits (361), Expect = 1e-43
 Identities = 70/164 (42%), Positives = 101/164 (61%), Gaps = 6/164 (3%)

Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQ-ESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ 69
           VK+V+LG    GKTSLV R+V  +F     ++TIGAAF  + + + E  +   IWDTAG 
Sbjct: 1   VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGS 60

Query: 70  ERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEE 129
           ERY +++ +YYRGA AA+V YD+T   SFERAK WV+ELQ     +  ++L   K DL E
Sbjct: 61  ERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQ-NLEEHCKIYLCGTKSDLIE 119

Query: 130 K----RKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIGD 169
           +    R+V   + + +A E      ETS+K+  NV+ELF ++ +
Sbjct: 120 QDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQKVAE 163

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 193

>gnl|CDD|133311 cd04111, Rab39, Rab GTPase family 39 (Rab39)

 Score =  143 bits (362), Expect = 2e-43
 Identities = 63/157 (40%), Positives = 103/157 (65%), Gaps = 2/157 (1%)

Query: 10  QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNE-VTIKFDIWDTAG 68
           Q +L+++GD   GK+SL+ RF +G+F +  + T+G  FF++++ +   V IK  +WDTAG
Sbjct: 2   QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAG 61

Query: 69  QERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMF-LVANKVDL 127
           QER+ S+   YYR +   ++V+DIT+ +SFE    W++E +    P+  +F LV +K DL
Sbjct: 62  QERFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDL 121

Query: 128 EEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELF 164
           E +R+V  EE E  A++ G+ ++ETSA++  NV E F
Sbjct: 122 ESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAF 158

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 211

>gnl|CDD|214541 smart00173, RAS, Ras subfamily of RAS small GTPases

 Score =  136 bits (345), Expect = 2e-41
 Identities = 61/157 (38%), Positives = 94/157 (59%), Gaps = 2/157 (1%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           KLV+LG  G GK++L ++F++G F D  + TI    + + + ++      DI DTAGQE 
Sbjct: 2   KLVVLGSGGVGKSALTIQFIQGHFVDDYDPTI-EDSYRKQIEIDGEVCLLDILDTAGQEE 60

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEK 130
           + ++   Y R     ++VY IT   SFE  KK+ +++ R +   ++ + LV NK DLE +
Sbjct: 61  FSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESE 120

Query: 131 RKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
           R V  EEG+  A++ G  FLETSAK   NV+E FY++
Sbjct: 121 RVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDL 157

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades. Length = 164

>gnl|CDD|197466 smart00010, small_GTPase, Small GTPase of the Ras superfamily; ill-defined subfamily

 Score =  136 bits (344), Expect = 3e-41
 Identities = 61/157 (38%), Positives = 93/157 (59%), Gaps = 2/157 (1%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           KLV+LG  G GK++L ++FV+G F D  + TI    + + + ++      DI DTAGQE 
Sbjct: 4   KLVVLGGGGVGKSALTIQFVQGHFVDEYDPTI-EDSYRKQIEIDGEVCLLDILDTAGQEE 62

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEK 130
           + ++   Y R     ++VY IT   SFE   K+ +++ R +   ++ + LV NK DLE +
Sbjct: 63  FSAMRDQYMRTGEGFLLVYSITDRQSFEEIAKFREQILRVKDRDDVPIVLVGNKCDLENE 122

Query: 131 RKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
           R V  EEG+  A++ G  FLETSAK   NV+E FY++
Sbjct: 123 RVVSTEEGKELARQWGCPFLETSAKERINVDEAFYDL 159

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. Length = 166

>gnl|CDD|206695 cd04112, Rab26, Rab GTPase family 26 (Rab26)

 Score =  132 bits (334), Expect = 1e-39
 Identities = 63/157 (40%), Positives = 99/157 (63%), Gaps = 1/157 (0%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQES-TIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           K++L+GD G GKT L++RF  G F       T+G  F  +V++++ V +K  IWDTAGQE
Sbjct: 2   KVMLVGDSGVGKTCLLVRFKDGAFLAGSFIATVGIQFTNKVVTVDGVKVKLQIWDTAGQE 61

Query: 71  RYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEK 130
           R+ S+   YYR A A +++YD+T+  SF+  + W+ E+      ++++ L+ NK D+  +
Sbjct: 62  RFRSVTHAYYRDAHALLLLYDVTNKSSFDNIRAWLTEILEYAQSDVVIMLLGNKADMSGE 121

Query: 131 RKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
           R VK E+GE  A+E G+ F+ETSAK+  NV   F  +
Sbjct: 122 RVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAV 158

Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 191

>gnl|CDD|133306 cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-like

 Score =  128 bits (324), Expect = 2e-38
 Identities = 55/156 (35%), Positives = 91/156 (58%), Gaps = 3/156 (1%)

Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEV--TIKFDIWDTAG 68
           +K++++G+   GK+S++ RFVKG F    + TIG  F  + + L +    ++  +WDTAG
Sbjct: 1   IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAG 60

Query: 69  QERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLE 128
           QE + ++   YYRGA A ++V+  T  +SFE  + W ++++ +   ++ M LV  K+DL 
Sbjct: 61  QEEFDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECG-DIPMVLVQTKIDLL 119

Query: 129 EKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELF 164
           ++  + NEE E  A+   L    TS K   NV ELF
Sbjct: 120 DQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELF 155

Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signaling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206692 cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab18) and 32 (Rab32)

 Score =  129 bits (327), Expect = 2e-38
 Identities = 55/158 (34%), Positives = 91/158 (57%), Gaps = 7/158 (4%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSL-NEVTIKFDIWDTAGQE 70
           K++++GD+G GKTS++ R+V G F    ++TIG  F  +V+       ++  +WD AGQE
Sbjct: 2   KVLVIGDLGVGKTSIIKRYVHGVFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQE 61

Query: 71  RYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQR--QGNPNLIM--FLVANKVD 126
           R+  +  +YY+GA  A++V+D+T   +FE   KW  +L           +   L+ANK D
Sbjct: 62  RFGGMTRVYYKGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPALLLANKCD 121

Query: 127 LEEKR-KVKNEEGELYAQENGLS-FLETSAKSAHNVNE 162
           L+++R     E+ + + +ENG   + ETSAK   N+ E
Sbjct: 122 LKKERLAKDPEQMDQFCKENGFIGWFETSAKENINIEE 159

Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 201

>gnl|CDD|133315 cd04115, Rab33B_Rab33A, Rab GTPase family 33 includes Rab33A and Rab33B

 Score =  128 bits (323), Expect = 4e-38
 Identities = 59/158 (37%), Positives = 89/158 (56%), Gaps = 5/158 (3%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K++++GD   GKT L  RF  G+F +  E+TIG  F  + + ++   IK  +WDTAGQER
Sbjct: 4   KIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQER 63

Query: 72  Y-HSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLI-MFLVANKVDLEE 129
           +  S+   YYR   A V VYD+T+M SF     W++E ++   PN +   LV NK DL E
Sbjct: 64  FRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLRE 123

Query: 130 KRKVKNEEGELYAQENGLSFLETSAK---SAHNVNELF 164
           + +V  +  + +A  + +   ETSAK      +V  +F
Sbjct: 124 QIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIF 161

Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only]

 Score =  129 bits (326), Expect = 4e-38
 Identities = 64/179 (35%), Positives = 93/179 (51%), Gaps = 18/179 (10%)

Query: 7   KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDT 66
              + K+V+LGD G GKT+L+ R V  +F +    TIG     + +      IK  +WDT
Sbjct: 2   FMKEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDT 61

Query: 67  AGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERA-KKWVQELQRQGNPNLIMFLVANKV 125
           AGQE Y SL P YYRGA   ++VYD T  +S +   ++W++EL+     ++ + LV NK+
Sbjct: 62  AGQEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKI 121

Query: 126 DLEEKRKVKNEEGELYAQEN---------------GLSFLETSAKSAH--NVNELFYEI 167
           DL +++    E      +E                  + LETSAKS    NVNELF E+
Sbjct: 122 DLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETSAKSLTGPNVNELFKEL 180

Length = 219

>gnl|CDD|206698 cd04117, Rab15, Rab GTPase family 15 (Rab15)

 Score =  127 bits (320), Expect = 7e-38
 Identities = 61/156 (39%), Positives = 92/156 (58%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           +L+L+GD G GKT L+ RF   +F     STIG  F  + + ++ + ++  IWDTAGQER
Sbjct: 2   RLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQER 61

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           Y ++   YYR A    +VYDI+S  S++   KWV ++       +   L+ NK D E+KR
Sbjct: 62  YQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKR 121

Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
           +V +E+G   A+E G+ F ETSA +  N+ E F  +
Sbjct: 122 QVGDEQGNKLAKEYGMDFFETSACTNKNIKESFTRL 157

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133310 cd04110, Rab35, Rab GTPase family 35 (Rab35)

 Score =  128 bits (323), Expect = 7e-38
 Identities = 65/156 (41%), Positives = 96/156 (61%), Gaps = 1/156 (0%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           KL+++GD G GK+SL+LRF    F     +TIG  F  + + +N   +K  IWDTAGQER
Sbjct: 8   KLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQER 67

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           + ++   YYRG    +VVYD+T+ +SF   K+W+QE++ Q   ++   LV NK D  E++
Sbjct: 68  FRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIE-QNCDDVCKVLVGNKNDDPERK 126

Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
            V+ E+   +A + G+S  ETSAK   NV E+F  I
Sbjct: 127 VVETEDAYKFAGQMGISLFETSAKENINVEEMFNCI 162

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 199

>gnl|CDD|185444 PTZ00099, PTZ00099, rab6; Provisional

 Score =  124 bits (311), Expect = 3e-36
 Identities = 63/129 (48%), Positives = 85/129 (65%)

Query: 40  ESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFE 99
           +STIG  F ++ L L+E  ++  +WDTAGQER+ SL P Y R +AAA+VVYDIT+  SFE
Sbjct: 10  QSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFE 69

Query: 100 RAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHN 159
              KW+Q++  +   ++I+ LV NK DL + RKV  EEG   AQE    F ETSAK+ HN
Sbjct: 70  NTTKWIQDILNERGKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHN 129

Query: 160 VNELFYEIG 168
           +  LF +I 
Sbjct: 130 IKVLFKKIA 138

Length = 176

>gnl|CDD|206699 cd04120, Rab12, Rab GTPase family 12 (Rab12)

 Score =  124 bits (313), Expect = 3e-36
 Identities = 60/159 (37%), Positives = 99/159 (62%), Gaps = 1/159 (0%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           +++++G  G GKTSL+ RF    F +  +ST+G  F  + + L    I+  IWDTAGQER
Sbjct: 2   QVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQER 61

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           ++S+   YYR A   ++VYDIT  ++F+   KW++ + +  + +  + LV NK+D E  R
Sbjct: 62  FNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDR 121

Query: 132 KVKNEEGELYAQE-NGLSFLETSAKSAHNVNELFYEIGD 169
           ++  ++GE +AQ+  G+ F E SAK   NV+E+F ++ D
Sbjct: 122 EITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVD 160

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 202

>gnl|CDD|206657 cd01865, Rab3, Rab GTPase family 3 contains Rab3A, Rab3B, Rab3C and Rab3D

 Score =  120 bits (301), Expect = 5e-35
 Identities = 60/158 (37%), Positives = 89/158 (56%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           KL+++G+   GKTS + R+    F     ST+G  F  + +  N+  IK  IWDTAGQER
Sbjct: 3   KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRNDKRIKLQIWDTAGQER 62

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           Y ++   YYRGA   +++YDIT+ +SF   + W  +++     N  + LV NK D+E++R
Sbjct: 63  YRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDER 122

Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIGD 169
            V  E G   A + G  F E SAK   NV ++F  + D
Sbjct: 123 VVSAERGRQLADQLGFEFFEASAKENINVKQVFERLVD 160

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|215587 PLN03118, PLN03118, Rab family protein; Provisional

 Score =  120 bits (301), Expect = 2e-34
 Identities = 65/167 (38%), Positives = 99/167 (59%), Gaps = 3/167 (1%)

Query: 3   RTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFD 62
           ++S  ++  K++L+GD G GK+SL++ F+     D    TIG  F  + L++    +K  
Sbjct: 7   QSSGYDLSFKILLIGDSGVGKSSLLVSFISSSVEDLA-PTIGVDFKIKQLTVGGKRLKLT 65

Query: 63  IWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFER-AKKWVQELQ-RQGNPNLIMFL 120
           IWDTAGQER+ +L   YYR A   ++VYD+T  ++F   +  W +E++    N + +  L
Sbjct: 66  IWDTAGQERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKML 125

Query: 121 VANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
           V NKVD E +R V  EEG   A+E+G  FLE SAK+  NV + F E+
Sbjct: 126 VGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRENVEQCFEEL 172

Length = 211

>gnl|CDD|133319 cd04119, RJL, Rab GTPase family J-like (RabJ-like)

 Score =  114 bits (288), Expect = 6e-33
 Identities = 48/159 (30%), Positives = 92/159 (57%), Gaps = 5/159 (3%)

Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +K++ +G+ G GK+ ++ R+ +G+F      TIG  +  + +S+    ++ + +D +G  
Sbjct: 1   IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHP 60

Query: 71  RYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNP-----NLIMFLVANKV 125
            Y  +   +Y+     ++VYD+T   SFE    W++E++++G P     N+++ + ANK+
Sbjct: 61  EYLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKI 120

Query: 126 DLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELF 164
           DL + R V  +EG L+A+  G  + ETSA +   VNE+F
Sbjct: 121 DLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMF 159

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 168

>gnl|CDD|133345 cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3

 Score =  111 bits (280), Expect = 1e-31
 Identities = 52/157 (33%), Positives = 92/157 (58%), Gaps = 2/157 (1%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           KLV++G  G GK++L ++F++  F    + TI  ++ T+   ++    + DI DTAGQE 
Sbjct: 4   KLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY-TKQCEIDGQWARLDILDTAGQEE 62

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPN-LIMFLVANKVDLEEK 130
           + ++   Y R     ++V+ +T   SFE   K+  ++ R  + +   M LV NK DLE +
Sbjct: 63  FSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQ 122

Query: 131 RKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
           R+V  EEG+  A++  + ++ETSAK   NV++ F+++
Sbjct: 123 RQVSREEGQELARQLKIPYIETSAKDRVNVDKAFHDL 159

The M-Ras/R-Ras-like subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133324 cd04124, RabL2, Rab GTPase-like family 2 (Rab-like2)

 Score =  111 bits (278), Expect = 1e-31
 Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 4/156 (2%)

Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           VK++LLGD   GK+ LV RF+   +   Q ST     +         TI  D WDTAGQE
Sbjct: 1   VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQE 60

Query: 71  RYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEK 130
           R+ ++   YY  A A ++V+D+T   +++   KW +EL R+  P +   +VANK+DL+  
Sbjct: 61  RFQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEEL-REYRPEIPCIVVANKIDLDPS 119

Query: 131 RKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYE 166
                ++   +A+++ L     SA    NV +LF +
Sbjct: 120 ---VTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQD 152

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share > 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 161

>gnl|CDD|133338 cd04138, H_N_K_Ras_like, Ras GTPase family containing H-Ras,N-Ras and K-Ras4A/4B

 Score =  108 bits (272), Expect = 2e-30
 Identities = 54/155 (34%), Positives = 86/155 (55%), Gaps = 3/155 (1%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           KLV++G  G GK++L ++ ++  F D  + TI  ++  QV+   E  +  DI DTAGQE 
Sbjct: 3   KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCL-LDILDTAGQEE 61

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLI-MFLVANKVDLEEK 130
           Y ++   Y R     + V+ I S  SFE    + ++++R  + + + M LV NK DL   
Sbjct: 62  YSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLA-A 120

Query: 131 RKVKNEEGELYAQENGLSFLETSAKSAHNVNELFY 165
           R V   +G+  A+  G+ ++ETSAK+   V E FY
Sbjct: 121 RTVSTRQGQDLAKSYGIPYIETSAKTRQGVEEAFY 155

H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. Others are proposed to play negative regulatory roles in oncogenesis, including RASSF and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|240385 PTZ00369, PTZ00369, Ras-like protein; Provisional

 Score =  109 bits (273), Expect = 2e-30
 Identities = 62/157 (39%), Positives = 92/157 (58%), Gaps = 2/157 (1%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           KLV++G  G GK++L ++F++  F D  + TI  ++  Q   ++E T   DI DTAGQE 
Sbjct: 7   KLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQC-VIDEETCLLDILDTAGQEE 65

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEK 130
           Y ++   Y R     + VY ITS  SFE    + +++ R +    + M LV NK DL+ +
Sbjct: 66  YSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSE 125

Query: 131 RKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
           R+V   EG+  A+  G+ FLETSAK   NV+E FYE+
Sbjct: 126 RQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYEL 162

Length = 189

>gnl|CDD|133376 cd04176, Rap2, Rap2 family GTPase consists of Rap2a, Rap2b, and Rap2c

 Score =  107 bits (269), Expect = 4e-30
 Identities = 59/157 (37%), Positives = 93/157 (59%), Gaps = 2/157 (1%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K+V+LG  G GK++L ++FV G F +  + TI   F+ + + ++      +I DTAG E+
Sbjct: 3   KVVVLGSGGVGKSALTVQFVSGTFIEKYDPTI-EDFYRKEIEVDSSPSVLEILDTAGTEQ 61

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEK 130
           + S+  +Y +     +VVY + +  +F+  K    ++ R +G   + + LV NKVDLE +
Sbjct: 62  FASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESE 121

Query: 131 RKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
           R+V + EG   A+E G  F+ETSAKS   VNELF EI
Sbjct: 122 REVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEI 158

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, including the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|133326 cd04126, Rab20, Rab GTPase family 20 (Rab20)

 Score =  108 bits (272), Expect = 5e-30
 Identities = 64/188 (34%), Positives = 97/188 (51%), Gaps = 40/188 (21%)

Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFF-TQVLSLNEVTIKFDIWDTAGQ 69
           +K+VLLGDM  GKTSL+ R+++ +F D   ST+G AF+  Q    N       IWDTAG+
Sbjct: 1   LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQWGPYN-----ISIWDTAGR 54

Query: 70  ERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDL-- 127
           E++H L  MY RGAAA ++ YD++++ S E  +     L    N + +  +V NK+DL  
Sbjct: 55  EQFHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTE 114

Query: 128 -----------------EEKRKVKNEEGELYAQE----NGLS----------FLETSAKS 156
                            E++R+V  E+ + + +       L             ETSAK+
Sbjct: 115 EGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKT 174

Query: 157 AHNVNELF 164
            +NV+ELF
Sbjct: 175 GYNVDELF 182

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 220

>gnl|CDD|206643 cd00877, Ran, Ras-related nuclear proteins (Ran)/TC4 family of small GTPases

 Score =  106 bits (267), Expect = 1e-29
 Identities = 54/158 (34%), Positives = 86/158 (54%), Gaps = 13/158 (8%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAA-----FFTQVLSLNEVTIKFDIWDT 66
           KLVL+GD GTGKT+ V R + G+F     +T+G       F T     N   I+F++WDT
Sbjct: 2   KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHT-----NRGKIRFNVWDT 56

Query: 67  AGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVD 126
           AGQE++  L   YY     A++++D+TS  +++    W ++L R    N+ + L  NKVD
Sbjct: 57  AGQEKFGGLRDGYYIQGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVD 115

Query: 127 LEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELF 164
           +  K +    +   + ++  L + E SAKS +N  + F
Sbjct: 116 I--KDRKVKPKQITFHRKKNLQYYEISAKSNYNFEKPF 151

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is bound to chromatin and confined to the nucleus. Ran itself is mobile and is actively imported into the nucleus by a mechanism involving NTF-2. Together with the compartmentalization of its regulators, this is thought to produce a relatively high concentration of RanGTP in the nucleus. Length = 166

>gnl|CDD|206710 cd04139, RalA_RalB, Ral (Ras-like) family containing highly homologous RalA and RalB

 Score =  106 bits (266), Expect = 1e-29
 Identities = 55/158 (34%), Positives = 100/158 (63%), Gaps = 2/158 (1%)

Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
            K++++G  G GK++L L+F+  +F +  E T  A  + + + L+   ++ +I DTAGQE
Sbjct: 1   HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTK-ADSYRKKVVLDGEEVQLNILDTAGQE 59

Query: 71  RYHSLAPMYYRGAAAAVVVYDITSMDSF-ERAKKWVQELQRQGNPNLIMFLVANKVDLEE 129
            Y ++   Y+R     ++V+ IT M+SF   A+   Q L+ + + N+ + LV NK DLE+
Sbjct: 60  DYAAIRDNYFRSGEGFLLVFSITDMESFTALAEFREQILRVKEDDNVPLLLVGNKCDLED 119

Query: 130 KRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
           KR+V  EE    A++ G++++ETSAK+  NV+++F+++
Sbjct: 120 KRQVSVEEAANLAEQWGVNYVETSAKTRANVDKVFFDL 157

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (>80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exocyst and for localizing the exocyst to the leading edge of migrating cells. In human cancer cells, RalA is required to support anchorage-independent proliferation and RalB is required to suppress apoptosis. RalA has been shown to localize to the plasma membrane while RalB is localized to the intracellular vesicles. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206712 cd04141, Rit_Rin_Ric, Ras-like protein in all tissues (Rit), Ras-like protein in neurons (Rin) and Ras-related protein which interacts with calmodulin (Ric)

 Score =  105 bits (263), Expect = 4e-29
 Identities = 53/155 (34%), Positives = 88/155 (56%), Gaps = 2/155 (1%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K+V+LG  G GK+++ ++F+   F D+ + TI  A+ TQ    NE  +  DI DTAGQ  
Sbjct: 4   KIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKTQARIDNEPAL-LDILDTAGQAE 62

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEK 130
           + ++   Y R     ++ Y +T   SF+ A ++ + + R +   ++ + LV NKVDLE++
Sbjct: 63  FTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKELITRVRLTEDIPLVLVGNKVDLEQQ 122

Query: 131 RKVKNEEGELYAQENGLSFLETSAKSAHNVNELFY 165
           R+V  EEG   A+E    F ETSA     +++ F+
Sbjct: 123 RQVTTEEGRNLAREFNCPFFETSAALRFYIDDAFH 157

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to signal in parallel with the Ras pathway or stimulate the Ras pathway at some upstream point, and binding of calmodulin to Ric may negatively regulate Ric activity. Length = 172

>gnl|CDD|133344 cd04144, Ras2, Rat sarcoma (Ras) family 2 of small guanosine triphosphatases (GTPases)

 Score =  105 bits (263), Expect = 7e-29
 Identities = 55/159 (34%), Positives = 90/159 (56%), Gaps = 4/159 (2%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           KLV+LGD G GKT+L ++     F +  + TI  ++  QV+ ++      ++ DTAGQE 
Sbjct: 1   KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVV-VDGQPCMLEVLDTAGQEE 59

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQR---QGNPNLIMFLVANKVDLE 128
           Y +L   + R     ++VY ITS  +FER +++ +++QR   +   ++ + +V NK D  
Sbjct: 60  YTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKV 119

Query: 129 EKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
            +R+V  EEG   A+  G  F+E SAK+  NV   FY +
Sbjct: 120 YEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTL 158

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 190

>gnl|CDD|206693 cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab34) and 36 (Rab36)

 Score =  104 bits (260), Expect = 1e-28
 Identities = 55/169 (32%), Positives = 93/169 (55%), Gaps = 10/169 (5%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K++++GD+  GKT L+ RF K  F    ++TIG  F  +   +  V     +WDTAGQER
Sbjct: 2   KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEVLGVPFSLQLWDTAGQER 61

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNP-NLIMFLVANKVDLEEK 130
           +  +A  YYRGA A ++V+D+T + S E  ++W+++  ++ +P ++++FLV  K DL   
Sbjct: 62  FKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSP 121

Query: 131 RKVKNEEGEL--YAQENGLSFLETSAKSAHNVNELF-------YEIGDC 170
            +    E +    A+E    +   SA +  NV + F       +E+G C
Sbjct: 122 AQYALMEQDAIKLAREMKAEYWAVSALTGENVRDFFFRVASLTFELGCC 170

Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 170

>gnl|CDD|206641 cd00157, Rho, Ras homology family (Rho) of small guanosine triphosphatases (GTPases)

 Score =  103 bits (258), Expect = 3e-28
 Identities = 49/169 (28%), Positives = 84/169 (49%), Gaps = 19/169 (11%)

Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAF--FTQVLSLNEVTIKFDIWDTAG 68
           +K+V++GD   GKT L++ +   +F      T+   F  ++  ++++   +   +WDTAG
Sbjct: 1   IKIVVVGDGAVGKTCLLISYTTNKFPTEYVPTV---FDNYSANVTVDGKQVNLGLWDTAG 57

Query: 69  QERYHSLAPMYYRGAAAAVVVYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDL 127
           QE Y  L P+ Y      ++ + + S  SFE  K KW  E+ +   PN+ + LV  K+DL
Sbjct: 58  QEEYDRLRPLSYPQTDVFLLCFSVDSPSSFENVKTKWYPEI-KHYCPNVPIILVGTKIDL 116

Query: 128 EEKRK-----------VKNEEGELYAQENGLS-FLETSAKSAHNVNELF 164
            +              +  EEGE  A+E G   ++E SA +   + E+F
Sbjct: 117 RDDGNTLKKLEKKQKPITPEEGEKLAKEIGAVKYMECSALTQEGLKEVF 165

Members of the Rho (Ras homology) family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Since crystal structures often lack C-terminal residues, this feature is not available for annotation in many of the CDs in the hierarchy. Length = 171

>gnl|CDD|206694 cd04109, Rab28, Rab GTPase family 28 (Rab28)

 Score =  103 bits (259), Expect = 4e-28
 Identities = 58/161 (36%), Positives = 87/161 (54%), Gaps = 4/161 (2%)

Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSL-NEVTIKFDIWDTAGQ 69
           +K+V+LGD  +GKTSL+ RF +  F    + TIG  FF++ ++L   + +   +WD  GQ
Sbjct: 1   IKIVVLGDGASGKTSLIRRFAQEGFGKSYKQTIGLDFFSRRITLPGSLNVTLQVWDIGGQ 60

Query: 70  ERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKW---VQELQRQGNPNLIMFLVANKVD 126
           +    +   Y  GA A  +VYDIT+  SFE  + W   V+++  +      M LV NK D
Sbjct: 61  QIGGKMLDKYIYGAQAVCLVYDITNSQSFENLEDWLSVVKKVNEESETKPKMVLVGNKTD 120

Query: 127 LEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
           LE  R+V  E+   +AQEN +  +  SAK+   V   F  I
Sbjct: 121 LEHNRQVTAEKHARFAQENDMESIFVSAKTGDRVFLCFQRI 161

Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumably the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 213

>gnl|CDD|206700 cd04127, Rab27A, Rab GTPase family 27a (Rab27a)

 Score =  102 bits (256), Expect = 6e-28
 Identities = 52/165 (31%), Positives = 88/165 (53%), Gaps = 15/165 (9%)

Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVT----------IK 60
           +KL+ LGD G GKT+ + R+   +F     +T+G  F  + +  N             + 
Sbjct: 5   IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNSQGPDGTSGKAFRVH 64

Query: 61  FDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQG---NPNLI 117
             +WDTAGQER+ SL   ++R A   ++++D+TS  SF   + W+ +LQ      NP+++
Sbjct: 65  LQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSEQSFLNVRNWMSQLQAHAYCENPDIV 124

Query: 118 MFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNE 162
             L+ NK DL ++R+V   +    A + G+ + ETSA +  NV +
Sbjct: 125 --LIGNKADLPDQREVSERQARELADKYGIPYFETSAATGQNVEK 167

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated insulin secretion, making it a potential target for diabetes therapy. When bound to JFC1 in prostate cells, Rab27a is believed to regulate the exocytosis of prostate- specific markers. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 180

>gnl|CDD|206697 cd04116, Rab9, Rab GTPase family 9 (Rab9)

 Score =  101 bits (253), Expect = 1e-27
 Identities = 58/165 (35%), Positives = 90/165 (54%), Gaps = 6/165 (3%)

Query: 7   KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDT 66
           K+  +K++LLGD G GK+SL+ R+V  +F      TIG  F  + L ++   +   IWDT
Sbjct: 2   KSSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDT 61

Query: 67  AGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQG---NPNLIMFLV-A 122
           AGQER+ SL   +YRG+   ++ + +    SF+    W +E         P    F++  
Sbjct: 62  AGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILG 121

Query: 123 NKVDLEEKRKVKNEEGELYAQENGLS-FLETSAKSAHNVNELFYE 166
           NK+D+  +R+V  EE + + ++NG   + ETSAK A NV   F E
Sbjct: 122 NKIDI-PERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEE 165

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|133375 cd04175, Rap1, Rap1 family GTPase consists of Rap1a and Rap1b isoforms

 Score =  100 bits (251), Expect = 2e-27
 Identities = 59/157 (37%), Positives = 97/157 (61%), Gaps = 2/157 (1%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           KLV+LG  G GK++L ++FV+G F +  + TI  ++  QV  ++      +I DTAG E+
Sbjct: 3   KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQV-EVDGQQCMLEILDTAGTEQ 61

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSF-ERAKKWVQELQRQGNPNLIMFLVANKVDLEEK 130
           + ++  +Y +     V+VY IT+  +F +      Q L+ +   ++ M LV NK DLE++
Sbjct: 62  FTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDE 121

Query: 131 RKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
           R V  E+G+  A++ G +FLETSAK+  NVNE+FY++
Sbjct: 122 RVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDL 158

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines; interestingly, in the SCCs, the active GTP-bound form localized to the nucleus, while the inactive GDP-bound form localized to the cytoplasm. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap1a, which is stimulated by T-cell receptor (TCR) activation, is a positive regulator of T cells by directing integrin activation and augmenting lymphocyte responses. In murine hippocampal neurons, Rap1b determines which neurite will become the axon and directs the recruitment of Cdc42, which is required for formation of dendrites and axons. In murine platelets, Rap1b is required for normal homeostasis in vivo and is involved in integrin activation. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|197554 smart00174, RHO, Rho (Ras homology) subfamily of Ras-like small GTPases

 Score =  100 bits (252), Expect = 2e-27
 Identities = 53/170 (31%), Positives = 84/170 (49%), Gaps = 20/170 (11%)

Query: 13  LVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAF--FTQVLSLNEVTIKFDIWDTAGQE 70
           LV++GD   GKT L++ +    F    E  +   F  ++  + ++   ++  +WDTAGQE
Sbjct: 1   LVVVGDGAVGKTCLLIVYTTNAF---PEDYVPTVFENYSADVEVDGKPVELGLWDTAGQE 57

Query: 71  RYHSLAPMYYRGAAAAVVVYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDL-- 127
            Y  L P+ Y      ++ + + S  SFE  K KW  E+ +   PN+ + LV  K+DL  
Sbjct: 58  DYDRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEV-KHFCPNVPIILVGTKLDLRN 116

Query: 128 -----EEKRK-----VKNEEGELYAQENG-LSFLETSAKSAHNVNELFYE 166
                EE  K     V  E+G+  A+  G + +LE SA +   V E+F E
Sbjct: 117 DKSTLEELSKKKQEPVTYEQGQALAKRIGAVKYLECSALTQEGVREVFEE 166

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. Length = 174

>gnl|CDD|240284 PTZ00132, PTZ00132, GTP-binding nuclear protein Ran; Provisional

 Score =  102 bits (255), Expect = 2e-27
 Identities = 51/151 (33%), Positives = 86/151 (56%), Gaps = 3/151 (1%)

Query: 9   IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAG 68
            + KL+L+GD G GKT+ V R + G+F      T+G          N   I F++WDTAG
Sbjct: 8   PEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAG 67

Query: 69  QERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLE 128
           QE++  L   YY     A++++D+TS  +++    W +++ R    N+ + LV NKVD++
Sbjct: 68  QEKFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCE-NIPIVLVGNKVDVK 126

Query: 129 EKRKVKNEEGELYAQENGLSFLETSAKSAHN 159
           + R+VK  +   + ++N L + + SAKS +N
Sbjct: 127 D-RQVKARQITFHRKKN-LQYYDISAKSNYN 155

Length = 215

>gnl|CDD|206708 cd04136, Rap_like, Rap-like family consists of Rap1, Rap2 and RSR1

 Score = 99.2 bits (247), Expect = 7e-27
 Identities = 59/158 (37%), Positives = 96/158 (60%), Gaps = 3/158 (1%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           KLV+LG  G GK++L ++FV+G F D  + TI  ++  Q+    +  +  +I DTAG E+
Sbjct: 3   KLVVLGSGGVGKSALTVQFVQGIFVDKYDPTIEDSYRKQIEVDCQQCM-LEILDTAGTEQ 61

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEK 130
           + ++  +Y +      +VY IT+  SF   +   +++ R +   ++ M LV NK DLE++
Sbjct: 62  FTAMRDLYIKNGQGFALVYSITAQQSFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDE 121

Query: 131 RKVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYEI 167
           R V  EEG+  A++ G   FLETSAKS  NV+E+FY++
Sbjct: 122 RVVSKEEGQNLARQWGNCPFLETSAKSKINVDEIFYDL 159

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap2 is involved in multiple functions, including activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton and activation of the Wnt/beta-catenin signaling pathway in embryonic Xenopus. A number of effector proteins for Rap2 have been identified, including isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK), and the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. RSR1 is the fungal homolog of Rap1 and Rap2. In budding yeasts, it is involved in selecting a site for bud growth, which directs the establishment of cell polarization. The Rho family GTPase Cdc42 and its GEF, Cdc24, then establish an axis of polarized growth. It is believed that Cdc42 interacts directly with RSR1 in vivo. In filamentous fungi such as Ashbya gossypii, RSR1 is a key regulator of polar growth in the hypha. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206711 cd04140, ARHI_like, A Ras homolog member I (ARHI)

 Score = 99.1 bits (247), Expect = 9e-27
 Identities = 58/159 (36%), Positives = 86/159 (54%), Gaps = 4/159 (2%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           ++V+ G  G GK+SLVLRFVKG F +    TI   +  QV+S ++      I DT G  +
Sbjct: 3   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKSICTLQITDTTGSHQ 61

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKK-WVQELQRQGN--PNLIMFLVANKVDLE 128
           + ++  +      A ++VY ITS  S E  K  +    + +GN    + + LV NK D  
Sbjct: 62  FPAMQRLSISKGHAFILVYSITSKQSLEELKPIYELICEIKGNNLEKIPIMLVGNKCDES 121

Query: 129 EKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
             R+V + EG   A+    +F+ETSAK+ HNV ELF E+
Sbjct: 122 PSREVSSSEGAALARTWNCAFMETSAKTNHNVQELFQEL 160

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|178620 PLN03071, PLN03071, GTP-binding nuclear protein Ran; Provisional

 Score =  100 bits (251), Expect = 9e-27
 Identities = 58/158 (36%), Positives = 90/158 (56%), Gaps = 13/158 (8%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAA-----FFTQVLSLNEVTIKFDIWDT 66
           KLV++GD GTGKT+ V R + G+F    E TIG       FFT     N   I+F  WDT
Sbjct: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRFYCWDT 69

Query: 67  AGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVD 126
           AGQE++  L   YY     A++++D+T+  +++    W ++L R    N+ + L  NKVD
Sbjct: 70  AGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVD 128

Query: 127 LEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELF 164
           ++  R+VK ++   + ++N L + E SAKS +N  + F
Sbjct: 129 VKN-RQVKAKQVTFHRKKN-LQYYEISAKSNYNFEKPF 164

Length = 219

>gnl|CDD|206713 cd04146, RERG_RasL11_like, Ras-related and Estrogen-Regulated Growth inhibitor (RERG) and Ras-like 11 (RasL11)-like families

 Score = 98.1 bits (245), Expect = 2e-26
 Identities = 49/161 (30%), Positives = 84/161 (52%), Gaps = 6/161 (3%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K+ +LG  G GK++L +RF+  +F    E  + + +  QV +++   +  +I DT GQ++
Sbjct: 1   KIAVLGASGVGKSALTVRFLTKRFIGEYEPNLESLYSRQV-TIDGEQVSLEIQDTPGQQQ 59

Query: 72  YHSLAPM--YYRGAAAAVVVYDITSMDSFERAKKWVQELQR--QGNPNLIMFLVANKVDL 127
                 +    R A   V+VY IT   SF+   + +Q ++   + +  + + LV NK DL
Sbjct: 60  NEDPESLERSLRWADGFVLVYSITDRSSFDVVSQLLQLIREIKKRDGEIPVILVGNKADL 119

Query: 128 EEKRKVKNEEGELYAQENGLSFLETSA-KSAHNVNELFYEI 167
              R+V  EEG+  A E G  F E SA ++   V  +F+E+
Sbjct: 120 LHSRQVSTEEGQKLALELGCLFFEVSAAENYLEVQNVFHEL 160

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tumor suppressor activity. Length = 166

>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain

 Score = 97.8 bits (244), Expect = 3e-26
 Identities = 45/160 (28%), Positives = 83/160 (51%), Gaps = 4/160 (2%)

Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFF-DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ 69
           +K+V++GD   GK++L+ R +  +      +      + T V+  +  T KF++ DTAGQ
Sbjct: 2   IKIVIVGDPNVGKSTLLNRLLGNKISITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQ 61

Query: 70  ERYHSLAPMYYRGAAAAVVVYDITS-MDSFERAK-KWVQELQRQGNPNLIMFLVANKVDL 127
           E Y ++  +YYR   +++ V+DI   +   E    K  +E+       + + LV NK+DL
Sbjct: 62  EDYDAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAESGVPIILVGNKIDL 121

Query: 128 EEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
            +  K+K     L+A+ NG   +  SA++  N++  F  +
Sbjct: 122 RD-AKLKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIV 160

Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score = 97.1 bits (242), Expect = 4e-26
 Identities = 49/163 (30%), Positives = 80/163 (49%), Gaps = 13/163 (7%)

Query: 14  VLLGDMGTGKTSLVLRFVKGQFF---DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           V++G  G GK+SL+   + G+     D   +T     +  V  L++  +K  + DT G +
Sbjct: 1   VVVGRGGVGKSSLLNALLGGEVGEVSDVPGTTRDPDVY--VKELDKGKVKLVLVDTPGLD 58

Query: 71  RYH-----SLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKV 125
            +       LA +  RGA   ++V D T  +S E AK  +    R+    +I  LV NK+
Sbjct: 59  EFGGLGREELARLLLRGADLILLVVDSTDRESEEDAKLLILRRLRKEGIPII--LVGNKI 116

Query: 126 DLEEKRKVKNEEGELY-AQENGLSFLETSAKSAHNVNELFYEI 167
           DL E+R+V+        A+  G+   E SAK+   V+ELF ++
Sbjct: 117 DLLEEREVEELLRLEELAKILGVPVFEVSAKTGEGVDELFEKL 159

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|206709 cd04137, RheB, Ras Homolog Enriched in Brain (RheB) is a small GTPase

 Score = 96.5 bits (241), Expect = 1e-25
 Identities = 56/154 (36%), Positives = 84/154 (54%), Gaps = 2/154 (1%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K+ +LG    GK+SL ++FV+G F +    TI   F +++++        +I DTAGQ+ 
Sbjct: 3   KIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIITYKGQEYHLEIVDTAGQDE 61

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQ-GNPNLIMFLVANKVDLEEK 130
           Y  L   Y  G    ++VY +TS  SFE  K    ++    G  ++ + LV NK DL  +
Sbjct: 62  YSILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHME 121

Query: 131 RKVKNEEGELYAQENGLSFLETSAKSAHNVNELF 164
           R+V  EEG+  A+  G +FLE+SAK   NV E F
Sbjct: 122 RQVSAEEGKKLAESWGAAFLESSAKENENVEEAF 155

Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that leads to cell growth and cell-cycle progression. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 180

>gnl|CDD|206704 cd04132, Rho4_like, Ras homology family 4 (Rho4) of small guanosine triphosphatases (GTPases)-like

 Score = 95.5 bits (238), Expect = 5e-25
 Identities = 51/171 (29%), Positives = 85/171 (49%), Gaps = 15/171 (8%)

Query: 8   NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTA 67
           +++VK+V++GD G GKT L++ + +G F +    T+   + T +   N   I+  +WDTA
Sbjct: 1   DLKVKIVVVGDGGCGKTCLLMVYAQGSFPEEYVPTVFENYVTTLQVPNGKIIELALWDTA 60

Query: 68  GQERYHSLAPMYYRGAAAAVVVYDITSMDSFER-AKKWVQELQRQGNPNLIMFLVANKVD 126
           GQE Y  L P+ Y      ++ Y + +  S +    KW  E+     P   + LV  K D
Sbjct: 61  GQEDYDRLRPLSYPDVDVILICYSVDNPTSLDNVEDKWYPEV-NHFCPGTPIVLVGLKTD 119

Query: 127 LEEKRK------------VKNEEGELYAQE-NGLSFLETSAKSAHNVNELF 164
           L + +             V  E+GE  A+    ++++E SAK   NV+E+F
Sbjct: 120 LRKDKNSVSKLRAQGLEPVTPEQGESVAKSIGAVAYIECSAKLMENVDEVF 170

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 197

>gnl|CDD|128473 smart00176, RAN, Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

 Score = 94.7 bits (235), Expect = 1e-24
 Identities = 51/149 (34%), Positives = 86/149 (57%), Gaps = 3/149 (2%)

Query: 16  LGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSL 75
           +GD GTGKT+ V R + G+F     +T+G      V   N   I+F++WDTAGQE++  L
Sbjct: 1   VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGL 60

Query: 76  APMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKN 135
              YY     A++++D+T+  +++    W ++L R    N+ + L  NKVD+++ RKVK 
Sbjct: 61  RDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDVKD-RKVKA 118

Query: 136 EEGELYAQENGLSFLETSAKSAHNVNELF 164
           +    + ++N L + + SAKS +N  + F
Sbjct: 119 KSITFHRKKN-LQYYDISAKSNYNFEKPF 146

Ran is involved in the active transport of proteins through nuclear pores. Length = 200

>gnl|CDD|133321 cd04121, Rab40, Rab GTPase family 40 (Rab40) contains Rab40a, Rab40b and Rab40c

 Score = 93.5 bits (232), Expect = 2e-24
 Identities = 50/157 (31%), Positives = 84/157 (53%), Gaps = 1/157 (0%)

Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +K +L+GD   GK  ++     G         +G  + T  + L+   +K  +WDT+GQ 
Sbjct: 7   LKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQG 66

Query: 71  RYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEK 130
           R+ ++   Y RGA   ++VYDIT+  SF+   +W++E+     P +   LV N++ L  K
Sbjct: 67  RFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHA-PGVPKILVGNRLHLAFK 125

Query: 131 RKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
           R+V  E+ + YA+ NG++F E S     N+ E F E+
Sbjct: 126 RQVATEQAQAYAERNGMTFFEVSPLCNFNITESFTEL 162

The Rab40 subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 189

>gnl|CDD|206662 cd01870, RhoA_like, Ras homology family A (RhoA)-like includes RhoA, RhoB and RhoC

 Score = 88.6 bits (220), Expect = 1e-22
 Identities = 59/170 (34%), Positives = 84/170 (49%), Gaps = 22/170 (12%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEV---TIKFDIWDTAG 68
           KLV++GD   GKT L++ F K QF +    T+   +   +    EV    ++  +WDTAG
Sbjct: 3   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADI----EVDGKQVELALWDTAG 58

Query: 69  QERYHSLAPMYYRGAAAAVVVYDITSMDSFERA-KKWVQELQRQGNPNLIMFLVANKVDL 127
           QE Y  L P+ Y      ++ + I S DS E   +KW  E+ +   PN+ + LV NK DL
Sbjct: 59  QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDL 117

Query: 128 -------EEKRK-----VKNEEGELYAQE-NGLSFLETSAKSAHNVNELF 164
                   E  K     VK EEG   A++     +LE SAK+   V E+F
Sbjct: 118 RNDEHTIRELAKMKQEPVKPEEGRAMAEKIGAFGYLECSAKTKEGVREVF 167

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranylgeranylated forms; however, RhoB can be present in palmitoylated, farnesylated, and geranylgeranylated forms. RhoA and RhoC are highly relevant for tumor progression and invasiveness; however, RhoB has recently been suggested to be a tumor suppressor. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|206688 cd04101, RabL4, Rab GTPase-like family 4 (Rab-like4)

 Score = 88.4 bits (219), Expect = 1e-22
 Identities = 45/162 (27%), Positives = 77/162 (47%), Gaps = 7/162 (4%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQES---TIGAAFFTQVLSL--NEVTIKFDIWDT 66
           +  ++GD   GK++LV  F       FQ++   T G     + + +     +++  I+D+
Sbjct: 2   QCAVVGDPAVGKSALVQMF-HSDGATFQKNYTMTTGCDLVVKTVPVPDTSDSVELFIFDS 60

Query: 67  AGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNP-NLIMFLVANKV 125
           AGQE +  +    +   A   VVYD+T+  SF    +W+  ++   +  +    LV NK 
Sbjct: 61  AGQELFSDMVENVWEQPAVVCVVYDVTNEVSFNNCSRWINRVRTHSHGLHTPGVLVGNKC 120

Query: 126 DLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
           DL ++R+V   + +  AQ N L F ETSAK        F  +
Sbjct: 121 DLTDRREVDAAQAQALAQANTLKFYETSAKEGVGYEAPFLSL 162

RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. Length = 167

>gnl|CDD|206702 cd04129, Rho2, Ras homology family 2 (Rho2) of small guanosine triphosphatases (GTPases)

 Score = 88.4 bits (219), Expect = 2e-22
 Identities = 51/165 (30%), Positives = 87/165 (52%), Gaps = 14/165 (8%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           KLV++GD   GKTSL+  F  G+F +    T+   + T    ++   ++  +WDTAGQE 
Sbjct: 3   KLVIVGDGACGKTSLLYVFTLGEFPEEYHPTVFENYVTDC-RVDGKPVQLALWDTAGQEE 61

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEEK 130
           Y  L P+ Y  A   ++ + I + DS E  + KW++E+ R+  PN+ + LV  K DL ++
Sbjct: 62  YERLRPLSYSKAHVILIGFAIDTPDSLENVRTKWIEEV-RRYCPNVPVILVGLKKDLRQE 120

Query: 131 ----------RKVKNEEGELYAQENGL-SFLETSAKSAHNVNELF 164
                       V  ++ +L A+  G   ++E SA +   V+++F
Sbjct: 121 AVAKGNYATDEFVPIQQAKLVARAIGAKKYMECSALTGEGVDDVF 165

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). Length = 190

>gnl|CDD|206706 cd04134, Rho3, Ras homology family 3 (Rho3) of small guanosine triphosphatases (GTPases)

 Score = 88.0 bits (218), Expect = 3e-22
 Identities = 54/167 (32%), Positives = 84/167 (50%), Gaps = 16/167 (9%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAF--FTQVLSLNEVTIKFDIWDTAGQ 69
           K+V+LGD   GKTSL+  F +G F    E T+   F  +   + ++ + ++  +WDTAGQ
Sbjct: 2   KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTV---FENYIHDIFVDGLAVELSLWDTAGQ 58

Query: 70  ERYHSLAPMYYRGAAAAVVVYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLE 128
           E +  L  + Y      ++ + + + DS E  + KW+ E+ R   P + + LVA K DL 
Sbjct: 59  EEFDRLRSLSYADTHVIMLCFSVDNPDSLENVESKWLAEI-RHHCPGVKLVLVALKCDLR 117

Query: 129 EKRKVKNEEGELYAQENGLS---------FLETSAKSAHNVNELFYE 166
           E R  ++      + E GL+         +LE SAK    VNE F E
Sbjct: 118 EPRNERDRGTHTISYEEGLAVAKRINACRYLECSAKLNRGVNEAFTE 164

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 185

>gnl|CDD|133377 cd04177, RSR1, RSR1/Bud1p family GTPase

 Score = 87.2 bits (216), Expect = 4e-22
 Identities = 52/155 (33%), Positives = 87/155 (56%), Gaps = 3/155 (1%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K+V+LG  G GK++L ++FV+  F +  + TI  ++  QV          +I DTAG E+
Sbjct: 3   KIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCD-LEILDTAGTEQ 61

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEK 130
           + ++  +Y +     ++VY +TS  S     +  +++ R + + N+ M LV NK DLE+ 
Sbjct: 62  FTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDD 121

Query: 131 RKVKNEEG-ELYAQENGLSFLETSAKSAHNVNELF 164
           R+V  E+G  L  Q   + F ETSA+   NV+E+F
Sbjct: 122 RQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVF 156

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 168

>gnl|CDD|206701 cd04128, Spg1, Septum-promoting GTPase (Spg1)

 Score = 85.5 bits (212), Expect = 2e-21
 Identities = 47/160 (29%), Positives = 83/160 (51%), Gaps = 8/160 (5%)

Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +K+ LLGD   GKTSL++++V+G+F +    T+G  F  + +S+    I F IWD  GQ 
Sbjct: 1   LKIGLLGDAQIGKTSLMVKYVEGEFDEEYIQTLGVNFMEKTISIRGTEITFSIWDLGGQR 60

Query: 71  RYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDL--- 127
            + ++ P+  + A A + ++D+T   +    K+W ++  R  N   I  LV  K DL   
Sbjct: 61  EFINMLPLVCKDAVAILFMFDLTRKSTLNSIKEWYRQ-ARGFNKTAIPILVGTKYDLFAD 119

Query: 128 ---EEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELF 164
              EE+ ++  ++   YA+      +  S   + NV ++F
Sbjct: 120 LPPEEQEEI-TKQARKYAKAMKAPLIFCSTSHSINVQKIF 158

Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 182

>gnl|CDD|206715 cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfamily of Ras GTPases

 Score = 85.9 bits (213), Expect = 3e-21
 Identities = 55/157 (35%), Positives = 81/157 (51%), Gaps = 7/157 (4%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLN--EVTIKF-DIWDTAG 68
           ++VLLGD G GK+SL   F  G + D      G   + + +S++  E T+   D W+   
Sbjct: 2   RVVLLGDSGVGKSSLANIFTAGVYEDSAYEASGDDTYERTVSVDGEEATLVVYDHWE--- 58

Query: 69  QERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDL 127
           QE    L     +   A V+VY +T   SFE+A +   +L+R +   ++ + LV NK DL
Sbjct: 59  QEDGMWLEDSCMQVGDAYVIVYSVTDRSSFEKASELRIQLRRARQAEDIPIILVGNKSDL 118

Query: 128 EEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELF 164
              R+V  +EG   A      F+ETSA   HNV+ELF
Sbjct: 119 VRSREVSVQEGRACAVVFDCKFIETSAALQHNVDELF 155

RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ras superfamily members. The N-terminal extension is not conserved among family members; the C-terminal extension is reported to be conserved among the family and lack the CaaX prenylation motif typical of membrane-associated Ras proteins. However, a putative CaaX motif has been identified in the alignment of the C-terminal residues of this CD. Length = 219

>gnl|CDD|219856 pfam08477, Miro, Miro-like protein

 Score = 81.3 bits (201), Expect = 2e-20
 Identities = 34/116 (29%), Positives = 57/116 (49%), Gaps = 4/116 (3%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K+V++GD G+GK+SL+ + V G+F        G       L ++  T   +IWD  G+E 
Sbjct: 1   KVVVIGDKGSGKSSLLSQLVGGEFPPEPLEIQGDTLAVDTLEVDGDTGLLNIWDFGGREE 60

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERA---KKWVQELQRQGNPNLIMFLVANK 124
                 ++ + A A ++VYD+T  +S         W+  L R+    + + LV NK
Sbjct: 61  LKFEHIIFMKWADAILLVYDLTDRESLNEVSRLIAWLPNL-RKLGGKIPVILVGNK 115

Mitochondrial Rho proteins (Miro-1, and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis. Length = 116

>gnl|CDD|133330 cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (Wrch-1) is a Rho family GTPase similar to Cdc42

 Score = 79.8 bits (197), Expect = 3e-19
 Identities = 43/170 (25%), Positives = 83/170 (48%), Gaps = 20/170 (11%)

Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAF--FTQVLSLNEVTIKFDIWDTAG 68
           +K VL+GD   GKTSL++ +       +    +  AF  F+ V+ ++   ++  + DTAG
Sbjct: 1   LKCVLVGDGAVGKTSLIVSYT---TNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAG 57

Query: 69  QERYHSLAPMYYRGAAAAVVVYDITSMDSFER-AKKWVQELQRQGNPNLIMFLVANKVDL 127
           Q+ +  L P+ Y      ++ + + +  SF+  ++KW+ E+ R+ NP   + LV  + DL
Sbjct: 58  QDEFDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEI-RKHNPKAPIILVGTQADL 116

Query: 128 EE------------KRKVKNEEGELYAQENG-LSFLETSAKSAHNVNELF 164
                         ++ V     +  A++ G   ++E SA +  N+ E+F
Sbjct: 117 RTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQKNLKEVF 166

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|206680 cd01893, Miro1, Mitochondrial Rho family 1 (Miro1), N-terminal

 Score = 78.9 bits (195), Expect = 6e-19
 Identities = 51/168 (30%), Positives = 76/168 (45%), Gaps = 24/168 (14%)

Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFD-----FQESTIGAAFFTQVLSLNE-VTIKFDIW 64
           V++VL+GD G GK+SL++  V  +F +       E TI A          E V     I 
Sbjct: 3   VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPEITIPADVT------PERVPTT--IV 54

Query: 65  DT--AGQERYHSLAPMYYRGAAAAVVVYDITSMDSFER-AKKWVQELQRQGNPNLIMFLV 121
           DT    Q+R +  A +  R A    +VY +    + ER   KW+  + R+    + + LV
Sbjct: 55  DTSSRPQDRANLAAEI--RKANVICLVYSVDRPSTLERIRTKWLPLI-RRLGVKVPIILV 111

Query: 122 ANKVDLEEKRKVKNEEGELYAQENGLS----FLETSAKSAHNVNELFY 165
            NK DL +       E E+    N        +E SAK+  NV+E+FY
Sbjct: 112 GNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFY 159

Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. Length = 168

>gnl|CDD|206705 cd04133, Rop_like, Rho-related protein from plants (Rop)-like

 Score = 78.0 bits (192), Expect = 2e-18
 Identities = 50/166 (30%), Positives = 84/166 (50%), Gaps = 14/166 (8%)

Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +K V +GD   GKT +++ +    F      T+   F   V  ++  T+   +WDTAGQE
Sbjct: 2   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANV-VVDGNTVNLGLWDTAGQE 60

Query: 71  RYHSLAPMYYRGAAAAVVVYDITSMDSFERA-KKWVQELQRQGNPNLIMFLVANKVDLEE 129
            Y+ L P+ YRGA   ++ + + S  S+E   KKW+ EL+    P + + LV  K+DL +
Sbjct: 61  DYNRLRPLSYRGADVFLLAFSLISKASYENVLKKWIPELRHYA-PGVPIVLVGTKLDLRD 119

Query: 130 KRK----------VKNEEG-ELYAQENGLSFLETSAKSAHNVNELF 164
            ++          +   +G EL  Q    +++E S+K+  NV  +F
Sbjct: 120 DKQFFADHPGAVPITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF 165

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, Rop1, Rop3, and Rop5 are all involved in pollen-tube growth; Rop2 plays a role in response to low-oxygen environments, cell-morphology, and root-hair development; root-hair development is also regulated by Rop4 and Rop6; Rop6 is also responsible for ABA response, and ABA response is also regulated by Rop10. Plants retain some of the regulatory mechanisms that are shared by other members of the Rho family, but have also developed a number of unique modes for regulating Rops. Unique RhoGEFs have been identified that are exclusively active toward Rop proteins, such as those containing the domain PRONE (plant-specific Rop nucleotide exchanger). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|206703 cd04131, Rnd, Rho family GTPase subfamily Rnd includes Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8

 Score = 75.2 bits (185), Expect = 2e-17
 Identities = 51/170 (30%), Positives = 90/170 (52%), Gaps = 21/170 (12%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAF--FTQVLSLNEVTIKFDIWDTAGQ 69
           K+VL+GD   GKT+L+  F K  F +    T+   F  +T    +++  I+  +WDT+G 
Sbjct: 3   KIVLVGDSQCGKTALLQVFAKDSFPENYVPTV---FENYTASFEVDKQRIELSLWDTSGS 59

Query: 70  ERYHSLAPMYYRGAAAAVVVYDITSMDSFERA-KKWVQELQRQGNPNLIMFLVANKVDLE 128
             Y ++ P+ Y  + A ++ +DI+  ++ +   KKW  E++    PN  + LV  K DL 
Sbjct: 60  PYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEVREFC-PNTPVLLVGCKSDLR 118

Query: 129 ----------EKRK--VKNEEGELYAQENG-LSFLETSAKSAHN-VNELF 164
                      KR+  V +E+G   A++ G  +++E SAK++ N V ++F
Sbjct: 119 TDLSTLTELSNKRQIPVSHEQGRNLAKQIGAAAYVECSAKTSENSVRDVF 168

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 176

>gnl|CDD|206741 cd09914, RocCOR, Ras of complex proteins (Roc) C-terminal of Roc (COR) domain family

 Score = 70.4 bits (173), Expect = 9e-16
 Identities = 36/155 (23%), Positives = 67/155 (43%), Gaps = 4/155 (2%)

Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFT-QVLSLNEVTIKFDIWDTAGQ 69
            KL+L+G  G GKTSL  + +  +F   + ST G      ++ +     I+ ++WD  GQ
Sbjct: 2   AKLMLVGQGGVGKTSLCKQLIGEKFDGDESSTHGINVQDWKIPAPERKKIRLNVWDFGGQ 61

Query: 70  ERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQ-RQGNPNLIMFLVANKVDLE 128
           E YH+    +    +  ++V+D+ + D   R   W+++++   G   +I  LV   +D  
Sbjct: 62  EIYHATHQFFLTSRSLYLLVFDLRTGDEVSRVPYWLRQIKAFGGVSPVI--LVGTHIDES 119

Query: 129 EKRKVKNEEGELYAQENGLSFLETSAKSAHNVNEL 163
               +  +                S K+   + EL
Sbjct: 120 CDEDILKKALNKKFPAIINDIHFVSCKNGKGIAEL 154

RocCOR (or Roco) protein family is characterized by a superdomain containing a Ras-like GTPase domain, called Roc (Ras of complex proteins), and a characteristic second domain called COR (C-terminal of Roc). A kinase domain and diverse regulatory domains are also often found in Roco proteins. Their functions are diverse; in Dictyostelium discoideum, which encodes 11 Roco proteins, they are involved in cell division, chemotaxis and development, while in human, where 4 Roco proteins (LRRK1, LRRK2, DAPK1, and MFHAS1) are encoded, these proteins are involved in epilepsy and cancer. Mutations in LRRK2 (leucine-rich repeat kinase 2) are known to cause familial Parkinson's disease. Length = 161

>gnl|CDD|133343 cd04143, Rhes_like, Ras homolog enriched in striatum (Rhes) and activator of G-protein signaling 1 (Dexras1/AGS1)

 Score = 71.3 bits (175), Expect = 2e-15
 Identities = 41/164 (25%), Positives = 79/164 (48%), Gaps = 11/164 (6%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           ++V+LG    GKT++V RF+ G+F +    TI   F  ++ S+     + DI DT+G   
Sbjct: 2   RMVVLGASKVGKTAIVSRFLGGRFEEQYTPTI-EDFHRKLYSIRGEVYQLDILDTSGNHP 60

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFE---------RAKKWVQELQRQGNPNLIMFLVA 122
           + ++  +        ++V+ + + +SFE            K   + + + N  + M +  
Sbjct: 61  FPAMRRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICG 120

Query: 123 NKVDLEEKRKVKNEEGELY-AQENGLSFLETSAKSAHNVNELFY 165
           NK D +  R+V+ +E E     +   ++ E SAK   N++E+F 
Sbjct: 121 NKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNLDEMFR 164

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression levels in other tissues. Dexras1 localizes primarily to the cytoplasm, and is a critical regulator of the circadian master clock to photic and nonphotic input. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 247

>gnl|CDD|206714 cd04147, Ras_dva, Ras - dorsal-ventral anterior localization (Ras-dva) family

 Score = 69.9 bits (171), Expect = 3e-15
 Identities = 45/160 (28%), Positives = 81/160 (50%), Gaps = 7/160 (4%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           +LV +G  G GKT+L+ RF+   F      T+     ++   +  V +  DI DT+G   
Sbjct: 1   RLVFMGAAGVGKTALIQRFLYDTFEPKHRRTV-EELHSKEYEVAGVKVTIDILDTSGSYS 59

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQE-LQRQGNPNLIMFLVANKVDLEEK 130
           + ++  +  +   A  +VY +   +SFE  K+  +E L+ + +  + + +V NK+D   +
Sbjct: 60  FPAMRKLSIQNGDAFALVYSVDDPESFEEVKRLREEILEVKEDKFVPIVVVGNKIDSLAE 119

Query: 131 RKVKNEEGELYAQ---ENGLSFLETSAKSAHNVNELFYEI 167
           R+V+  +     +    NG  F+E SAK   NV E+F E+
Sbjct: 120 RQVEAADALSTVELDWNNG--FVEASAKDNENVTEVFKEL 157

Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 197

>gnl|CDD|206663 cd01871, Rac1_like, Ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)-like consists of Rac1, Rac2 and Rac3

 Score = 68.7 bits (168), Expect = 4e-15
 Identities = 47/170 (27%), Positives = 80/170 (47%), Gaps = 16/170 (9%)

Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +K V++GD   GKT L++ +    F      T+   +   V+ ++   +   +WDTAGQE
Sbjct: 2   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 60

Query: 71  RYHSLAPMYYRGAAAAVVVYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVD--- 126
            Y  L P+ Y      ++ + + S  SFE  + KW  E++    PN  + LV  K+D   
Sbjct: 61  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 119

Query: 127 -------LEEKR--KVKNEEGELYAQE-NGLSFLETSAKSAHNVNELFYE 166
                  L+EK+   +   +G   A+E   + +LE SA +   +  +F E
Sbjct: 120 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 169

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleotide association and is more efficiently activated by the RacGEF Tiam1. Both Rac1 and Rac3 have been implicated in the regulation of cell migration and invasion in human metastatic breast cancer. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|206735 cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases

 Score = 68.9 bits (168), Expect = 6e-15
 Identities = 49/177 (27%), Positives = 90/177 (50%), Gaps = 21/177 (11%)

Query: 6   NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAF--FTQVLSLNEVTIKFDI 63
           N+N++ K+V++GD   GKT+L+  F K  F    E+ +   F  +T    ++   I+  +
Sbjct: 1   NQNVKCKIVVVGDSQCGKTALLHVFAKDCF---PENYVPTVFENYTASFEIDTQRIELSL 57

Query: 64  WDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERA-KKWVQELQRQGNPNLIMFLVA 122
           WDT+G   Y ++ P+ Y  + A ++ +DI+  ++ +   KKW  E+Q +  PN  M LV 
Sbjct: 58  WDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQ-EFCPNTKMLLVG 116

Query: 123 NKVDL------------EEKRKVKNEEGELYAQE-NGLSFLETSAKSAHN-VNELFY 165
            K DL              +  V  ++G   A++    +++E SA  + N V ++F+
Sbjct: 117 CKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFH 173

Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight junction formation. Rnd3/RhoE is underexpressed in prostate cancer cells both in vitro and in vivo; re-expression of Rnd3/RhoE suppresses cell cycle progression and increases apoptosis, suggesting it may play a role in tumor suppression. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 182

>gnl|CDD|133277 cd01875, RhoG, Ras homolog family, member G (RhoG) of small guanosine triphosphatases (GTPases)

 Score = 67.7 bits (165), Expect = 2e-14
 Identities = 48/170 (28%), Positives = 82/170 (48%), Gaps = 16/170 (9%)

Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +K V++GD   GKT L++ +    F      T+   +  Q  +++  T+  ++WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQT-AVDGRTVSLNLWDTAGQE 62

Query: 71  RYHSLAPMYYRGAAAAVVVYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDL-- 127
            Y  L  + Y      ++ + I S  S+E  + KW  E+     PN+ + LV  K DL  
Sbjct: 63  EYDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHC-PNVPILLVGTKKDLRN 121

Query: 128 --EEKRKVK--------NEEGELYAQENG-LSFLETSAKSAHNVNELFYE 166
             +  +K+K         ++G   A++   + +LE SA +   V E+F E
Sbjct: 122 DADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSALNQDGVKEVFAE 171

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 191

>gnl|CDD|206737 cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases

 Score = 67.0 bits (163), Expect = 6e-14
 Identities = 47/172 (27%), Positives = 87/172 (50%), Gaps = 24/172 (13%)

Query: 9   IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAF--FTQVLSLNEVTIKFDIWDT 66
           ++ KLVL+GD+  GKT+++    K  +    E+ +   F  +T  L   E  ++  +WDT
Sbjct: 12  VRCKLVLVGDVQCGKTAMLQVLAKDCY---PETYVPTVFENYTACLETEEQRVELSLWDT 68

Query: 67  AGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERA-KKWVQELQRQGNPNLIMFLVANKV 125
           +G   Y ++ P+ Y  + A ++ +DI+  + F+ A KKW  E+     P+  + L+  K 
Sbjct: 69  SGSPYYDNVRPLCYSDSDAVLLCFDISRPEIFDSALKKWRAEILDYC-PSTRILLIGCKT 127

Query: 126 DL------------EEKRKVKNEEGELYAQENGL-SFLE----TSAKSAHNV 160
           DL            +++  +  E+G   A++ G  ++LE    TS KS H++
Sbjct: 128 DLRTDLSTLMELSNQKQAPISYEQGCAMAKQLGAEAYLECSAFTSEKSIHSI 179

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 232

>gnl|CDD|206736 cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases

 Score = 66.6 bits (162), Expect = 6e-14
 Identities = 50/171 (29%), Positives = 94/171 (54%), Gaps = 21/171 (12%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAF--FTQVLSLNEVTIKFDIWDTAGQ 69
           K+V++GD   GKT+L+  F K    ++ ES +   F  +T    +++  I+ ++WDT+G 
Sbjct: 3   KIVVVGDTQCGKTALLHVFAKD---NYPESYVPTVFENYTASFEIDKHRIELNMWDTSGS 59

Query: 70  ERYHSLAPMYYRGAAAAVVVYDITSMDSFERA-KKWVQELQRQGNPNLIMFLVANKVD-- 126
             Y ++ P+ Y  + A ++ +DI+  ++ +   KKW  E Q +  PN  + LV  K+D  
Sbjct: 60  SYYDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQ-EFCPNAKLVLVGCKLDMR 118

Query: 127 -----LEEKRK-----VKNEEGELYAQENG-LSFLETSAKSAHN-VNELFY 165
                L E  K     V +E+G L A++ G ++++E S++ + N V ++F+
Sbjct: 119 TDLSTLRELSKQRLIPVTHEQGSLLARQLGAVAYVECSSRMSENSVRDVFH 169

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in spermatocytes and early spermatids, with male-germ-cell Rac GTPase-activating protein (MgcRacGAP), where it localizes to the Golgi-derived pro-acrosomal vesicle. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 221

>gnl|CDD|206644 cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf-like (Arl) small GTPases

 Score = 63.7 bits (156), Expect = 2e-13
 Identities = 35/126 (27%), Positives = 57/126 (45%), Gaps = 12/126 (9%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           ++++LG  G GKT+++ +  K         TIG      V ++    +KF +WD  GQ++
Sbjct: 1   RILMLGLDGAGKTTILYKL-KLGEVVTTIPTIG----FNVETVEYKNVKFTVWDVGGQDK 55

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQEL----QRQGNPNLIMFLVANKVDL 127
              L   YY      + V D +  +  E AK  + +L    + +G P LI+   ANK DL
Sbjct: 56  IRPLWKHYYENTDGLIFVVDSSDRERIEEAKNELHKLLNEEELKGAPLLIL---ANKQDL 112

Query: 128 EEKRKV 133
                 
Sbjct: 113 PGALTE 118

Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thus, despite their significant sequence homologies, Arf family proteins may regulate unrelated functions. Length = 158

>gnl|CDD|206664 cd01874, Cdc42, cell division cycle 42 (Cdc42) is a small GTPase of the Rho family

 Score = 61.4 bits (149), Expect = 3e-12
 Identities = 45/170 (26%), Positives = 77/170 (45%), Gaps = 16/170 (9%)

Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +K V++GD   GKT L++ +   +F      T+   +   V+ +        ++DTAGQE
Sbjct: 2   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQE 60

Query: 71  RYHSLAPMYYRGAAAAVVVYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDL-- 127
            Y  L P+ Y      +V + + S  SFE  K KWV E+     P     LV  ++DL  
Sbjct: 61  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH-CPKTPFLLVGTQIDLRD 119

Query: 128 ----------EEKRKVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYE 166
                      +++ +  E GE  A++   + ++E SA +   +  +F E
Sbjct: 120 DPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQKGLKNVFDE 169

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addition, Cdc42 has been implicated in a number of human diseases through interactions with its regulators and downstream effectors. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|206724 cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl10) GTPases

 Score = 60.8 bits (148), Expect = 4e-12
 Identities = 47/157 (29%), Positives = 71/157 (45%), Gaps = 14/157 (8%)

Query: 13  LVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERY 72
           + L+G   +GKT+LV     GQF +    T+G  F  + ++   VTIK  +WD  GQ R+
Sbjct: 2   ITLVGLQNSGKTTLVNVIASGQFSEDTIPTVG--FNMRKVTKGNVTIK--VWDLGGQPRF 57

Query: 73  HSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQEL----QRQGNPNLIMFLVANKVDLE 128
            S+   Y RG  A V V D    +  E AK  + +L      +G P L+   + NK DL 
Sbjct: 58  RSMWERYCRGVNAIVYVVDAADREKLEVAKNELHDLLEKPSLEGIPLLV---LGNKNDLP 114

Query: 129 EKRKVKNEEGELYAQE---NGLSFLETSAKSAHNVNE 162
               V     ++  +      +S    SAK   N++ 
Sbjct: 115 GALSVDELIEQMNLKSITDREVSCYSISAKEKTNIDI 151

Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. Length = 159

>gnl|CDD|133342 cd04142, RRP22, Ras-related protein on chromosome 22 (RRP22) family

 Score = 59.9 bits (145), Expect = 2e-11
 Identities = 50/180 (27%), Positives = 77/180 (42%), Gaps = 22/180 (12%)

Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWD----- 65
           V++ +LG  G GKT++V +F+  +F +    T     +   + L+       I D     
Sbjct: 1   VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQ 60

Query: 66  ----TAGQE----RYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQ---ELQRQGNP 114
               TAGQE    R+  L     R + A ++VYDI S DSF   K   Q   E +  GN 
Sbjct: 61  RYPGTAGQEWMDPRFRGL-----RNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNK 115

Query: 115 NLIMFLVANKVDLEEKRKV-KNEEGELYAQENGLSFLETSAKSAHNVNELFYEIGDCTEC 173
              + +V NK D +  R   ++    L  +     +LE SAK   ++  LF E+      
Sbjct: 116 EPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNWHILLLFKELLISATT 175

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated. Length = 198

>gnl|CDD|206707 cd04135, Tc10, Rho GTPase TC10 (Tc10)

 Score = 56.9 bits (137), Expect = 1e-10
 Identities = 44/172 (25%), Positives = 83/172 (48%), Gaps = 20/172 (11%)

Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKF--DIWDTAG 68
           +K V++GD   GKT L++ +    F    E  +   F    +S+     ++   ++DTAG
Sbjct: 1   LKCVVVGDGAVGKTCLLMSYANDAF---PEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAG 57

Query: 69  QERYHSLAPMYYRGAAAAVVVYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDL 127
           QE Y  L P+ Y      ++ + + +  SF+  K +WV EL ++  PN+   L+  ++DL
Sbjct: 58  QEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPEL-KEYAPNVPYLLIGTQIDL 116

Query: 128 EE------------KRKVKNEEGELYAQENGLS-FLETSAKSAHNVNELFYE 166
            +            ++ +  E+G+  A+E G   ++E SA +   +  +F E
Sbjct: 117 RDDPKTLARLNDMKEKPITVEQGQKLAKEIGACCYVECSALTQKGLKTVFDE 168

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interactions with CFTR-associated ligand (CAL). The GTP-bound form of TC10 directs the trafficking of CFTR from the juxtanuclear region to the secretory pathway toward the plasma membrane, away from CAL-mediated DFTR degradation in the lysosome. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|206719 cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7) GTPases

 Score = 52.9 bits (127), Expect = 4e-09
 Identities = 40/139 (28%), Positives = 61/139 (43%), Gaps = 13/139 (9%)

Query: 13  LVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSL---NEVTIKFDIWDTAGQ 69
           +V+LG    GKT+++ R    +F +F  +     F T+ + +   N   + F  WD  GQ
Sbjct: 6   IVMLGLDSAGKTTVLYRL---KFNEFVNTVPTKGFNTEKIKVSLGNAKGVTFHFWDVGGQ 62

Query: 70  ERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQR----QGNPNLIMFLVANKV 125
           E+   L   Y R     V V D   ++  E AK  + ++ +    QG P L+   +ANK 
Sbjct: 63  EKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITKFSENQGVPVLV---LANKQ 119

Query: 126 DLEEKRKVKNEEGELYAQE 144
           DL     V   E  L   E
Sbjct: 120 DLPNALPVSEVEKLLALHE 138

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 183

>gnl|CDD|200938 pfam00025, Arf, ADP-ribosylation factor family

 Score = 52.6 bits (127), Expect = 5e-09
 Identities = 34/124 (27%), Positives = 58/124 (46%), Gaps = 6/124 (4%)

Query: 7   KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDT 66
            N ++++++LG    GKT+++ +   G+       TIG   F  V ++    +KF +WD 
Sbjct: 11  WNKEMRILILGLDNAGKTTILYKLKLGEIVTTI-PTIG---FN-VETVTYKNVKFTVWDV 65

Query: 67  AGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQE-LQRQGNPNLIMFLVANKV 125
            GQE    L   Y+    A + V D    D  E AK+ +   L  +   +  + ++ANK 
Sbjct: 66  GGQESLRPLWRNYFPNTDAVIFVVDSADRDRIEEAKEELHALLNEEELADAPLLILANKQ 125

Query: 126 DLEE 129
           DL  
Sbjct: 126 DLPG 129

Pfam combines a number of different Prosite families together. Length = 174

>gnl|CDD|128474 smart00177, ARF, ARF-like small GTPases; ARF, ADP-ribosylation factor

 Score = 52.2 bits (125), Expect = 7e-09
 Identities = 33/129 (25%), Positives = 60/129 (46%), Gaps = 12/129 (9%)

Query: 8   NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTA 67
           N +++++++G    GKT+++ +   G+      +TI    F  V ++    I F +WD  
Sbjct: 11  NKEMRILMVGLDAAGKTTILYKLKLGESV----TTIPTIGF-NVETVTYKNISFTVWDVG 65

Query: 68  GQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNP----NLIMFLVAN 123
           GQ++   L   YY      + V D    D  + A+   +EL R  N     + ++ + AN
Sbjct: 66  GQDKIRPLWRHYYTNTQGLIFVVDSNDRDRIDEAR---EELHRMLNEDELRDAVILVFAN 122

Query: 124 KVDLEEKRK 132
           K DL +  K
Sbjct: 123 KQDLPDAMK 131

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). Length = 175

>gnl|CDD|206716 cd04149, Arf6, ADP ribosylation factor 6 (Arf6)

 Score = 50.9 bits (122), Expect = 2e-08
 Identities = 36/125 (28%), Positives = 61/125 (48%), Gaps = 12/125 (9%)

Query: 7   KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDT 66
            N ++++++LG    GKT+++ +   GQ      +TI    F  V ++    +KF++WD 
Sbjct: 6   GNKEMRILMLGLDAAGKTTILYKLKLGQ----SVTTIPTVGF-NVETVTYKNVKFNVWDV 60

Query: 67  AGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGN----PNLIMFLVA 122
            GQ++   L   YY G    + V D    D  + A+   QEL R  N     + ++ + A
Sbjct: 61  GGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIDEAR---QELHRIINDREMRDALLLVFA 117

Query: 123 NKVDL 127
           NK DL
Sbjct: 118 NKQDL 122

Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed to function at multiple sites on the plasma membrane through interaction with a specific set of GEFs, GAPs, and effectors. Arf6 has been implicated in breast cancer and melanoma cell invasion, and in actin remodelling at the invasion site of Chlamydia infection. Length = 168

>gnl|CDD|177661 PLN00023, PLN00023, GTP-binding protein; Provisional

 Score = 52.2 bits (125), Expect = 2e-08
 Identities = 37/156 (23%), Positives = 63/156 (40%), Gaps = 25/156 (16%)

Query: 10  QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIG-------------AAFFTQVLSLNE 56
           QV+++++GD G GK+SLV   VKG        TIG              +    +   +E
Sbjct: 21  QVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSE 80

Query: 57  VTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGN--- 113
                ++WD +G ERY     ++Y      + V+D++   +    +KW  E+   G    
Sbjct: 81  RDFFVELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSA 140

Query: 114 ------PNLI---MFLVANKVDLEEKRKVKNEEGEL 140
                 P  +     ++ NK D+  K   +   G L
Sbjct: 141 PLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGNL 176

Length = 334

>gnl|CDD|206689 cd04102, RabL3, Rab GTPase-like family 3 (Rab-like3)

 Score = 48.4 bits (115), Expect = 2e-07
 Identities = 29/111 (26%), Positives = 48/111 (43%), Gaps = 9/111 (8%)

Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSL-----NEVTIKFDIWD 65
           VK+++LGD G GK+SLV    K Q       T+G +   +  +       E T   ++WD
Sbjct: 1   VKVLVLGDSGVGKSSLVHLLCKNQVLGNPSWTVGCSVDVRHHTYGEGTPEEKTFYVELWD 60

Query: 66  TAGQ----ERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQG 112
             G     E   S   ++Y      + V+D+T+  S +   +W  E   + 
Sbjct: 61  VGGSVGSAESVKSTRAVFYNQINGIIFVHDLTNKKSSQNLYRWSLEALNRD 111

RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown. Length = 204

>gnl|CDD|133353 cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8) GTPases

 Score = 45.8 bits (109), Expect = 2e-06
 Identities = 34/122 (27%), Positives = 60/122 (49%), Gaps = 12/122 (9%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K++++G    GKT+++ +F+ G+       TIG    + V  +    I+F +WD  GQE 
Sbjct: 17  KVIIVGLDNAGKTTILYQFLLGEVVHTS-PTIG----SNVEEIVYKNIRFLMWDIGGQES 71

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQ-GNPNL---IMFLVANKVDL 127
             S    YY    A ++V D T  +     K   +EL +   + +L   ++ ++ANK DL
Sbjct: 72  LRSSWNTYYTNTDAVILVIDSTDRERLPLTK---EELYKMLAHEDLRKAVLLVLANKQDL 128

Query: 128 EE 129
           + 
Sbjct: 129 KG 130

Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. Length = 174

>gnl|CDD|206674 cd01887, IF2_eIF5B, Initiation Factor 2 (IF2)/ eukaryotic Initiation Factor 5B (eIF5B) family

 Score = 44.0 bits (105), Expect = 6e-06
 Identities = 47/183 (25%), Positives = 71/183 (38%), Gaps = 46/183 (25%)

Query: 19  MG---TGKTSL--VLR---FVKGQFFDFQES---T--IGAAFFTQVLSLNEVTIKFDIWD 65
           MG    GKT+L   +R      G      E+   T  IGA      + +  +T    I D
Sbjct: 6   MGHVDHGKTTLLDKIRKTNVAAG------EAGGITQHIGAYQVPIDVKIPGITF---I-D 55

Query: 66  TAGQERYHSLAPMYYRGAAA---AVVVYDITSMDSFE-RAKKWVQELQRQGNPNLIMFLV 121
           T G E + +   M  RGA+    A++V      D    +  + +   +    P     +V
Sbjct: 56  TPGHEAFTN---MRARGASVTDIAILVVAA--DDGVMPQTIEAINHAKAANVP----IIV 106

Query: 122 A-NKVDLEEKR-----KVKNEEGELYAQ--ENG--LSFLETSAKSAHNVNELFYEIGDCT 171
           A NK+D          +VKNE  EL     E G  +S +  SAK+   +++L   I    
Sbjct: 107 AINKIDKPYGTEADPERVKNELSELGLVGEEWGGDVSIVPISAKTGEGIDDLLEAILLLA 166

Query: 172 ECF 174
           E  
Sbjct: 167 EVL 169

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s. Length = 169

>gnl|CDD|206723 cd04158, ARD1, (ADP-ribosylation factor domain protein 1 (ARD1)

 Score = 43.1 bits (101), Expect = 1e-05
 Identities = 32/118 (27%), Positives = 54/118 (45%), Gaps = 6/118 (5%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           ++V LG  G GKT+++ +  + +F      TIG      V ++    +KF IWD  G+ +
Sbjct: 1   RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIG----FNVETVEYKNLKFTIWDVGGKHK 55

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGN-PNLIMFLVANKVDLE 128
              L   YY    A V V D +  D    A   + +L  +    + ++ + ANK D+ 
Sbjct: 56  LRPLWKHYYLNTQAVVFVIDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVA 113

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membrane. Two Tyr-based motifs in the Arf domain are responsible for Golgi localization, while the GAP domain controls lysosomal localization. Length = 169

>gnl|CDD|218203 pfam04670, Gtr1_RagA, Gtr1/RagA G protein conserved region

 Score = 42.6 bits (101), Expect = 3e-05
 Identities = 37/163 (22%), Positives = 68/163 (41%), Gaps = 24/163 (14%)

Query: 12  KLVLLGDMGTGKTSLVLR-FVKGQFFD--FQESTIGAAFFTQVLSLNEVTIKFDIWDTAG 68
           K++L+G  G+GK+S+    F      D     +TI      Q        +  ++WD  G
Sbjct: 1   KVLLMGLRGSGKSSMRSIIFSNYSPRDTLRLGATIDV---EQSHVRFLGNLTLNLWDCPG 57

Query: 69  QERY-----HSLAPMYYRGAAAAVVVYDITSMD---SFERAKKWVQELQRQGNPNLIMFL 120
           Q+ +            +      + V+D+ S +         K ++ L  Q +PN  +F+
Sbjct: 58  QDDFMENYLTRQKEHIFSNVGVLIYVFDVESREYEEDLATLVKIIEAL-YQYSPNAKVFV 116

Query: 121 VANKVDL--EEKRK-VKNEEGELYAQE------NGLSFLETSA 154
           + +K+DL  E++RK +  +  E   +E        L+F  TS 
Sbjct: 117 LIHKMDLLSEDERKEIFEDRKEEIIEEIEDFGIEDLTFFLTSI 159

GTR1 was first identified in S. cerevisiae as a suppressor of a mutation in RCC1. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1. Included in this family is the human Rag C, a novel protein that has been shown to interact with RagA/B. Length = 230

>gnl|CDD|133275 cd01873, RhoBTB, RhoBTB protein is an atypical member of the Rho family of small GTPases

 Score = 42.3 bits (99), Expect = 3e-05
 Identities = 47/189 (24%), Positives = 77/189 (40%), Gaps = 38/189 (20%)

Query: 11  VKLVLLGDMGTGKTSLVL-RFVKGQFFDFQE-----STIGAA----FFTQVLS-----LN 55
           +K V++GD   GKT L+  R        +Q       T+ A        +VL      ++
Sbjct: 3   IKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVD 62

Query: 56  EVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKK-WVQELQRQGNP 114
            V++   +WDT G   +       Y  +   ++ + I S +S    K  W  E+ R   P
Sbjct: 63  GVSVSLRLWDTFGD--HDKDRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEI-RHFCP 119

Query: 115 NLIMFLVANKVDL-----EE--------KRKVKN------EEGELYAQENGLSFLETSAK 155
            + + LV  K+DL     +E         R +KN      E G   A+E G+ + ETS  
Sbjct: 120 RVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPPETGRAVAKELGIPYYETSVV 179

Query: 156 SAHNVNELF 164
           +   V ++F
Sbjct: 180 TQFGVKDVF 188

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature. Length = 195

>gnl|CDD|206717 cd04150, Arf1_5_like, ADP-ribosylation factor-1 (Arf1) and ADP-ribosylation factor-5 (Arf5)

 Score = 41.6 bits (98), Expect = 4e-05
 Identities = 30/121 (24%), Positives = 57/121 (47%), Gaps = 12/121 (9%)

Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           ++++++G    GKT+++ +   G+      +TI    F  V ++    I F +WD  GQ+
Sbjct: 1   MRILMVGLDAAGKTTILYKLKLGEIV----TTIPTIGF-NVETVEYKNISFTVWDVGGQD 55

Query: 71  RYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNP----NLIMFLVANKVD 126
           +   L   Y++     + V D    +    A+   +ELQR  N     + ++ + ANK D
Sbjct: 56  KIRPLWRHYFQNTQGLIFVVDSNDRERIGEAR---EELQRMLNEDELRDAVLLVFANKQD 112

Query: 127 L 127
           L
Sbjct: 113 L 113

The Arf1-Arf5-like subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents and other lower eukaryotes, lack Arf2. Human Arf3 shares 96% sequence identity with Arf1 and is believed to generally function interchangeably with Arf1. Human Arf4 in the activated (GTP-bound) state has been shown to interact with the cytoplasmic domain of epidermal growth factor receptor (EGFR) and mediate the EGF-dependent activation of phospholipase D2 (PLD2), leading to activation of the activator protein 1 (AP-1) transcription factor. Arf4 has also been shown to recognize the C-terminal sorting signal of rhodopsin and regulate its incorporation into specialized post-Golgi rhodopsin transport carriers (RTCs). There is some evidence that Arf5 functions at the early-Golgi and the trans-Golgi to affect Golgi-associated alpha-adaptin homology Arf-binding proteins (GGAs). Length = 159

>gnl|CDD|173423 PTZ00133, PTZ00133, ADP-ribosylation factor; Provisional

 Score = 41.0 bits (96), Expect = 8e-05
 Identities = 30/122 (24%), Positives = 59/122 (48%), Gaps = 12/122 (9%)

Query: 10  QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ 69
           +V+++++G    GKT+++ +   G+      +TI    F  V ++    +KF +WD  GQ
Sbjct: 17  EVRILMVGLDAAGKTTILYKLKLGEVV----TTIPTIGF-NVETVEYKNLKFTMWDVGGQ 71

Query: 70  ERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNP----NLIMFLVANKV 125
           ++   L   YY+     + V D    +    A+   +EL+R  +     + ++ + ANK 
Sbjct: 72  DKLRPLWRHYYQNTNGLIFVVDSNDRERIGDAR---EELERMLSEDELRDAVLLVFANKQ 128

Query: 126 DL 127
           DL
Sbjct: 129 DL 130

Length = 182

>gnl|CDD|206721 cd04155, Arl3, Arf-like 3 (Arl3) GTPase

 Score = 40.5 bits (95), Expect = 1e-04
 Identities = 32/131 (24%), Positives = 52/131 (39%), Gaps = 12/131 (9%)

Query: 1   MARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIK 60
                +   +V+++LLG    GKT++ L+    Q      S I       + ++     K
Sbjct: 6   RKLKPSSRQEVRILLLGLDNAGKTTI-LK----QLASEDISHITPTQGFNIKNVQADGFK 60

Query: 61  FDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQEL----QRQGNPNL 116
            ++WD  GQ +       Y+      + V D      FE A + + EL    +  G P L
Sbjct: 61  LNVWDIGGQRKIRPYWRNYFENTDVLIYVIDSADRKRFEEAGQELVELLEEEKLAGVPVL 120

Query: 117 IMFLVANKVDL 127
           +    ANK DL
Sbjct: 121 VF---ANKQDL 128

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. Length = 174

>gnl|CDD|133356 cd04156, ARLTS1, Arf-like tumor suppressor gene 1 (ARLTS1 or Arl11)

 Score = 40.1 bits (94), Expect = 1e-04
 Identities = 28/117 (23%), Positives = 56/117 (47%), Gaps = 5/117 (4%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           +++LLG    GK++L+ +    +       T+G  F  ++L L +  +   +WD  GQE+
Sbjct: 1   QVLLLGLDSAGKSTLLYKLKHAELVT-TIPTVG--FNVEMLQLEK-HLSLTVWDVGGQEK 56

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQE-LQRQGNPNLIMFLVANKVDL 127
             ++   Y       V V D +     + ++K ++  L+ +    + + L+ANK DL
Sbjct: 57  MRTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDL 113

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in high-risk familial breast cancer. Length = 160

>gnl|CDD|133362 cd04162, Arl9_Arfrp2_like, Arf-like 9 (Arl9)/Arfrp2-like GTPase

 Score = 39.7 bits (93), Expect = 2e-04
 Identities = 33/134 (24%), Positives = 56/134 (41%), Gaps = 9/134 (6%)

Query: 13  LVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERY 72
           +++LG  G GKTS +L  +  +     ES +    F  V    +     ++ +  G +  
Sbjct: 2   ILVLGLDGAGKTS-LLHSLSSE--RSLESVVPTTGFNSVAIPTQ-DAIMELLEIGGSQNL 57

Query: 73  HSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQR--QGNPNLIMFLVANKVDLEEK 130
                 Y  G+   + V D    +    A+   QEL +  Q  P+L + ++ANK DL   
Sbjct: 58  RKYWKRYLSGSQGLIFVVDSADSERLPLAR---QELHQLLQHPPDLPLVVLANKQDLPAA 114

Query: 131 RKVKNEEGELYAQE 144
           R V+    EL  + 
Sbjct: 115 RSVQEIHKELELEP 128

Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date. Length = 164

>gnl|CDD|206685 cd01898, Obg, Obg GTPase

 Score = 39.3 bits (93), Expect = 3e-04
 Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 3/61 (4%)

Query: 113 NPNLI---MFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIGD 169
           NP L      +V NK+DL +  +   +  EL  +  G      SA +   ++EL  ++  
Sbjct: 109 NPGLAEKPRIVVLNKIDLLDAEERFEKLKELLKELKGKKVFPISALTGEGLDELLKKLAK 168

Query: 170 C 170
            
Sbjct: 169 L 169

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain. Length = 170

>gnl|CDD|234395 TIGR03918, GTP_HydF, [FeFe] hydrogenase H-cluster maturation GTPase HydF

 Score = 39.0 bits (92), Expect = 7e-04
 Identities = 21/79 (26%), Positives = 40/79 (50%), Gaps = 10/79 (12%)

Query: 86  AVVVYDITSMDS-FERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQE 144
           A++V D       +E   + ++EL+ +  P ++   V NK+DL E+    + E E   ++
Sbjct: 89  ALLVVDAGVGPGEYE--LELIEELKERKIPYIV---VINKIDLGEE----SAELEKLEKK 139

Query: 145 NGLSFLETSAKSAHNVNEL 163
            GL  +  SA +   ++EL
Sbjct: 140 FGLPPIFVSALTGEGIDEL 158

This model describes the family of the [Fe] hydrogenase maturation protein HypF as characterized in Chlamydomonas reinhardtii and found, in an operon with radical SAM proteins HydE and HydG, in numerous bacteria. It has GTPase activity, can bind an 4Fe-4S cluster, and is essential for hydrogenase activity [Protein fate, Protein modification and repair]. Length = 391

>gnl|CDD|225138 COG2229, COG2229, Predicted GTPase [General function prediction only]

 Score = 38.2 bits (89), Expect = 7e-04
 Identities = 38/137 (27%), Positives = 65/137 (47%), Gaps = 20/137 (14%)

Query: 5   SNKNIQVKLVLLGDMGTGKTSLV------------LRFVKGQFFDFQESTIGAAFFTQVL 52
           +NK I+ K+V++G +G GKT+ V                       + +T+   F +  +
Sbjct: 5   ANKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGS--I 62

Query: 53  SLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQG 112
            L+E T    ++ T GQER+  +  +  RGA  A+V+ D +   +F  A++ +  L  + 
Sbjct: 63  ELDEDT-GVHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSRPITFH-AEEIIDFLTSR- 119

Query: 113 NPNLIMFLVA-NKVDLE 128
             N I  +VA NK DL 
Sbjct: 120 --NPIPVVVAINKQDLF 134

Length = 187

>gnl|CDD|133303 cd04103, Centaurin_gamma, Centaurin gamma (CENTG) GTPase

 Score = 37.9 bits (88), Expect = 9e-04
 Identities = 39/162 (24%), Positives = 70/162 (43%), Gaps = 13/162 (8%)

Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +KL ++G++ +GK++LV R++ G +    ES  G  F  +VL ++  +    I D  G  
Sbjct: 1   LKLGIVGNLRSGKSALVHRYLTGSYVQ-LESPEGGRFKKEVL-VDGQSHLLLIRDEGGA- 57

Query: 71  RYHSLAPMYYRGAAAAVV-VYDITSMDSFERAKKWVQELQRQGN-PNLIMFLVANKVDLE 128
                    + G   AV+ V+ +    SF+   +   +L    N   + + LV  +  + 
Sbjct: 58  -----PDAQFAGWVDAVIFVFSLEDEASFQTVYRLYHQLSSYRNISEIPLILVGTQDAIS 112

Query: 129 EK--RKVKNEEG-ELYAQENGLSFLETSAKSAHNVNELFYEI 167
               R + +    +L A     S+ ET A    NV  +F E 
Sbjct: 113 ASNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQEA 154

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues. GGAP has been shown to have high GTPase activity due to a direct intramolecular interaction between the N-terminal GTPase domain and the C-terminal ArfGAP domain. In human tissue, AGAP mRNA was detected in skeletal muscle, kidney, placenta, brain, heart, colon, and lung. Reduced expression levels were also observed in the spleen, liver, and small intestine. Length = 158

>gnl|CDD|206725 cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)

 Score = 37.7 bits (88), Expect = 0.001
 Identities = 32/128 (25%), Positives = 52/128 (40%), Gaps = 16/128 (12%)

Query: 53  SLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQR-- 110
            + +  + F  WD  GQE   SL   YY  +   + V D T  + F  +K   +++    
Sbjct: 47  EVGKARLMF--WDLGGQEELRSLWDKYYAESHGVIYVIDSTDRERFNESKSAFEKVINNE 104

Query: 111 --QGNPNLIMFLVANKVDLE------EKRKVKNEEGELYAQENGLSFLETSAKSAHNVNE 162
             +G P L++   ANK DL       E ++V ++   L  + +       SA     V E
Sbjct: 105 ALEGVPLLVL---ANKQDLPDALSVAEIKEVFDDCIALIGRRD-CLVQPVSALEGEGVEE 160

Query: 163 LFYEIGDC 170
               + DC
Sbjct: 161 GIEWLVDC 168

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. Length = 168

>gnl|CDD|206718 cd04151, Arl1, ADP ribosylation factor 1 (Arf1)

 Score = 37.0 bits (86), Expect = 0.002
 Identities = 34/124 (27%), Positives = 56/124 (45%), Gaps = 18/124 (14%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           ++++LG  G GKT+++ R   G+      +TI    F  V ++    +KF +WD  GQ  
Sbjct: 1   RILILGLDGAGKTTILYRLQVGEVV----TTIPTIGF-NVETVTYKNLKFQVWDLGGQT- 54

Query: 72  YHSLAPM---YYRGAAAAVVVYDITSMDSFERAKK----WVQELQRQGNPNLIMFLVANK 124
             S+ P    YY    A + V D T  D    +K      ++E + +    L+    ANK
Sbjct: 55  --SIRPYWRCYYSNTDAIIYVVDSTDRDRLGISKSELHAMLEEEELKDAVLLVF---ANK 109

Query: 125 VDLE 128
            D+ 
Sbjct: 110 QDMP 113

Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability. Length = 158

>gnl|CDD|165788 PLN00223, PLN00223, ADP-ribosylation factor; Provisional

 Score = 36.9 bits (85), Expect = 0.002
 Identities = 30/122 (24%), Positives = 56/122 (45%), Gaps = 12/122 (9%)

Query: 10  QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ 69
           +++++++G    GKT+++ +   G+      +TI    F  V ++    I F +WD  GQ
Sbjct: 17  EMRILMVGLDAAGKTTILYKLKLGEIV----TTIPTIGF-NVETVEYKNISFTVWDVGGQ 71

Query: 70  ERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNP----NLIMFLVANKV 125
           ++   L   Y++     + V D    D    A+    EL R  N     + ++ + ANK 
Sbjct: 72  DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEAR---DELHRMLNEDELRDAVLLVFANKQ 128

Query: 126 DL 127
           DL
Sbjct: 129 DL 130

Length = 181

>gnl|CDD|206646 cd00880, Era_like, E

 Score = 36.5 bits (85), Expect = 0.002
 Identities = 27/122 (22%), Positives = 42/122 (34%), Gaps = 21/122 (17%)

Query: 58  TIKFDIWDTAG-----------QERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQ 106
                + DT G            E    +A      A   ++V D       E AK  + 
Sbjct: 45  LGPVVLIDTPGLDEEGGLGRERVEEARQVA----DRADLVLLVVDSDLTPVEEEAK--LG 98

Query: 107 ELQRQGNPNLIMFLVANKVDL-EEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFY 165
            L+ +G P   + LV NK+DL  E  + +            L  +  SA     ++EL  
Sbjct: 99  LLRERGKP---VLLVLNKIDLVPESEEEELLRERKLELLPDLPVIAVSALPGEGIDELRK 155

Query: 166 EI 167
           +I
Sbjct: 156 KI 157

coli Ras-like protein (Era)-like GTPase. The Era (E. coli Ras-like protein)-like family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngB), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Length = 161

>gnl|CDD|237511 PRK13796, PRK13796, GTPase YqeH; Provisional

 Score = 37.1 bits (87), Expect = 0.003
 Identities = 34/97 (35%), Positives = 43/97 (44%), Gaps = 24/97 (24%)

Query: 86  AVVVYDITSMDSFERAKKWVQELQR--QGNPNLIMFLVANKVDLEEK----RKVKN---E 136
           A+VV  +   D F+    W+  L R    NP L   LV NK DL  K     KVKN   +
Sbjct: 71  ALVVNVV---DIFDFNGSWIPGLHRFVGNNPVL---LVGNKADLLPKSVKKNKVKNWLRQ 124

Query: 137 EGELYAQENGLS----FLETSAKSAHNVNELFYEIGD 169
           E    A+E GL      L  SA+  H ++EL   I  
Sbjct: 125 E----AKELGLRPVDVVL-ISAQKGHGIDELLEAIEK 156

Length = 365

>gnl|CDD|237048 PRK12299, obgE, GTPase CgtA; Reviewed

 Score = 36.6 bits (86), Expect = 0.003
 Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 4/80 (5%)

Query: 91  DITSMDSFERAKKWVQELQRQGNPNLI---MFLVANKVDLEEKRKVKNEEGELYAQENGL 147
           DI ++D  E  K    EL++  +P L      LV NK+DL ++ + + +   L     G 
Sbjct: 245 DIEAVDPVEDYKTIRNELEKY-SPELADKPRILVLNKIDLLDEEEEREKRAALELAALGG 303

Query: 148 SFLETSAKSAHNVNELFYEI 167
                SA +   ++EL   +
Sbjct: 304 PVFLISAVTGEGLDELLRAL 323

Length = 335

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	178
KOG0084	205	consensus GTPase Rab1/YPT1, small G protein superf	100.0
KOG0092	200	consensus GTPase Rab5/YPT51 and related small G pr	100.0
KOG0078	207	consensus GTP-binding protein SEC4, small G protei	100.0
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	100.0
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	100.0
KOG0094	221	consensus GTPase Rab6/YPT6/Ryh1, small G protein s	100.0
KOG0098	216	consensus GTPase Rab2, small G protein superfamily	100.0
KOG0080	209	consensus GTPase Rab18, small G protein superfamil	100.0
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	100.0
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	100.0
KOG0394	210	consensus Ras-related GTPase [General function pre	100.0
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	100.0
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	100.0
KOG0087	222	consensus GTPase Rab11/YPT3, small G protein super	100.0
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	100.0
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	100.0
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	100.0
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	100.0
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	100.0
KOG0093	193	consensus GTPase Rab3, small G protein superfamily	100.0
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	100.0
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	100.0
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	100.0
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	100.0
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	100.0
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	100.0
KOG0079	198	consensus GTP-binding protein H-ray, small G prote	100.0
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	100.0
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	100.0
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	100.0
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	100.0
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	100.0
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	100.0
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	100.0
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	100.0
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	100.0
PLN03110	216	Rab GTPase; Provisional	100.0
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	100.0
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	100.0
PTZ00369	189	Ras-like protein; Provisional	100.0
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	100.0
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	100.0
KOG0086	214	consensus GTPase Rab4, small G protein superfamily	100.0
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	100.0
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	100.0
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	100.0
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	100.0
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	100.0
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	100.0
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	100.0
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	100.0
PLN03108	210	Rab family protein; Provisional	100.0
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	100.0
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	100.0
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	100.0
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	100.0
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	100.0
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	100.0
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	100.0
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	100.0
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	100.0
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	100.0
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	100.0
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	100.0
KOG0091	213	consensus GTPase Rab39, small G protein superfamil	100.0
KOG0095	213	consensus GTPase Rab30, small G protein superfamil	100.0
KOG0088	218	consensus GTPase Rab21, small G protein superfamil	100.0
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	100.0
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	100.0
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	100.0
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	100.0
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	100.0
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	100.0
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	100.0
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	100.0
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	100.0
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	100.0
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	100.0
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	100.0
PLN03118	211	Rab family protein; Provisional	100.0
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	100.0
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	100.0
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	100.0
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	100.0
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	100.0
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	100.0
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	100.0
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	100.0
KOG0083	192	consensus GTPase Rab26/Rab37, small G protein supe	100.0
KOG0081	219	consensus GTPase Rab27, small G protein superfamil	100.0
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	100.0
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	100.0
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	100.0
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	100.0
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	100.0
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	100.0
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	100.0
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	100.0
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	100.0
KOG0395	196	consensus Ras-related GTPase [General function pre	100.0
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	100.0
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	100.0
PLN00223	181	ADP-ribosylation factor; Provisional	100.0
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	100.0
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	100.0
PTZ00133	182	ADP-ribosylation factor; Provisional	100.0
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	100.0
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	100.0
KOG0097	215	consensus GTPase Rab14, small G protein superfamil	100.0
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	100.0
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	99.98
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	99.97
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	99.97
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	99.97
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	99.97
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	99.97
KOG0073	185	consensus GTP-binding ADP-ribosylation factor-like	99.97
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.97
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	99.97
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	99.97
KOG0393	198	consensus Ras-related small GTPase, Rho type [Gene	99.97
PTZ00099	176	rab6; Provisional	99.97
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	99.97
smart00178	184	SAR Sar1p-like members of the Ras-family of small	99.97
PLN00023	334	GTP-binding protein; Provisional	99.96
KOG0070	181	consensus GTP-binding ADP-ribosylation factor Arf1	99.96
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.96
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	99.96
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.96
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.96
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	99.96
KOG4252	246	consensus GTP-binding protein [Signal transduction	99.96
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.96
PRK12299	335	obgE GTPase CgtA; Reviewed	99.96
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	99.95
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.95
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	99.95
COG1100	219	GTPase SAR1 and related small G proteins [General	99.95
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.94
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.94
KOG3883	198	consensus Ras family small GTPase [Signal transduc	99.94
PRK04213	201	GTP-binding protein; Provisional	99.94
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	99.94
KOG0075	186	consensus GTP-binding ADP-ribosylation factor-like	99.94
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.94
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	99.94
KOG0071	180	consensus GTP-binding ADP-ribosylation factor Arf6	99.94
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	99.94
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	99.93
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.93
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	99.93
cd01881	176	Obg_like The Obg-like subfamily consists of five w	99.93
PRK15494	339	era GTPase Era; Provisional	99.93
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	99.93
PRK03003	472	GTP-binding protein Der; Reviewed	99.92
cd00881	189	GTP_translation_factor GTP translation factor fami	99.92
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	99.92
PRK12297	424	obgE GTPase CgtA; Reviewed	99.92
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	99.92
PRK15467	158	ethanolamine utilization protein EutP; Provisional	99.92
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	99.92
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	99.92
PRK03003	472	GTP-binding protein Der; Reviewed	99.92
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	99.92
PRK12296	500	obgE GTPase CgtA; Reviewed	99.92
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	99.92
PRK11058	426	GTPase HflX; Provisional	99.91
KOG1673	205	consensus Ras GTPases [General function prediction	99.91
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.91
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	99.91
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	99.91
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	99.91
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	99.91
KOG0072	182	consensus GTP-binding ADP-ribosylation factor-like	99.9
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	99.9
PRK12298	390	obgE GTPase CgtA; Reviewed	99.9
PRK00089	292	era GTPase Era; Reviewed	99.9
KOG0076	197	consensus GTP-binding ADP-ribosylation factor-like	99.9
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	99.9
CHL00189	742	infB translation initiation factor 2; Provisional	99.9
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	99.9
cd04105	203	SR_beta Signal recognition particle receptor, beta	99.89
PRK05306	787	infB translation initiation factor IF-2; Validated	99.89
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	99.89
PRK05433	600	GTP-binding protein LepA; Provisional	99.89
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	99.89
KOG0074	185	consensus GTP-binding ADP-ribosylation factor-like	99.89
KOG0096	216	consensus GTPase Ran/TC4/GSP1 (nuclear protein tra	99.89
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.89
PRK00093	435	GTP-binding protein Der; Reviewed	99.89
COG1159	298	Era GTPase [General function prediction only]	99.89
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	99.88
PRK00093	435	GTP-binding protein Der; Reviewed	99.88
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	99.88
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.88
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.87
cd01896	233	DRG The developmentally regulated GTP-binding prot	99.87
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	99.87
PRK12317	425	elongation factor 1-alpha; Reviewed	99.86
COG2229	187	Predicted GTPase [General function prediction only	99.86
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	99.86
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	99.86
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	99.86
PRK10218	607	GTP-binding protein; Provisional	99.86
PRK04000	411	translation initiation factor IF-2 subunit gamma;	99.86
KOG4423	229	consensus GTP-binding protein-like, RAS superfamil	99.85
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	99.85
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	99.85
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	99.85
COG1160	444	Predicted GTPases [General function prediction onl	99.84
COG0486	454	ThdF Predicted GTPase [General function prediction	99.84
PRK04004	586	translation initiation factor IF-2; Validated	99.84
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	99.84
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	99.83
PF04670	232	Gtr1_RagA: Gtr1/RagA G protein conserved region; I	99.83
KOG1423	379	consensus Ras-like GTPase ERA [Cell cycle control,	99.83
COG0218	200	Predicted GTPase [General function prediction only	99.83
PRK12736	394	elongation factor Tu; Reviewed	99.83
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	99.83
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	99.82
PRK12735	396	elongation factor Tu; Reviewed	99.82
TIGR00485	394	EF-Tu translation elongation factor TU. This align	99.82
COG2262	411	HflX GTPases [General function prediction only]	99.81
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	99.81
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	99.81
COG1160	444	Predicted GTPases [General function prediction onl	99.8
KOG1489	366	consensus Predicted GTP-binding protein (ODN super	99.8
CHL00071	409	tufA elongation factor Tu	99.8
PRK00049	396	elongation factor Tu; Reviewed	99.79
PLN03126	478	Elongation factor Tu; Provisional	99.79
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	99.78
PLN00043	447	elongation factor 1-alpha; Provisional	99.78
COG1084	346	Predicted GTPase [General function prediction only	99.77
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	99.77
KOG0077	193	consensus Vesicle coat complex COPII, GTPase subun	99.77
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	99.77
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	99.77
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	99.77
PRK00741	526	prfC peptide chain release factor 3; Provisional	99.77
PLN03127	447	Elongation factor Tu; Provisional	99.76
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	99.76
PTZ00141	446	elongation factor 1- alpha; Provisional	99.76
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	99.75
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	99.75
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	99.74
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	99.74
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	99.74
KOG0462	650	consensus Elongation factor-type GTP-binding prote	99.74
PRK13351	687	elongation factor G; Reviewed	99.73
COG1163	365	DRG Predicted GTPase [General function prediction	99.73
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	99.73
TIGR00503	527	prfC peptide chain release factor 3. This translat	99.73
COG0536	369	Obg Predicted GTPase [General function prediction	99.72
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	99.72
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	99.72
PF09439	181	SRPRB: Signal recognition particle receptor beta s	99.72
COG3596	296	Predicted GTPase [General function prediction only	99.72
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	99.71
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	99.7
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	99.7
PRK12739	691	elongation factor G; Reviewed	99.69
KOG1145	683	consensus Mitochondrial translation initiation fac	99.69
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	99.67
KOG1191	531	consensus Mitochondrial GTPase [Translation, ribos	99.67
KOG0090	238	consensus Signal recognition particle receptor, be	99.67
PRK09866	741	hypothetical protein; Provisional	99.66
PRK09602	396	translation-associated GTPase; Reviewed	99.64
PRK00007	693	elongation factor G; Reviewed	99.62
cd00066	317	G-alpha G protein alpha subunit. The alpha subunit	99.59
PRK12740	668	elongation factor G; Reviewed	99.59
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	99.57
KOG1490	620	consensus GTP-binding protein CRFG/NOG1 (ODN super	99.57
TIGR00101	199	ureG urease accessory protein UreG. This model rep	99.57
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	99.57
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	99.57
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	99.57
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	99.56
PRK14845	1049	translation initiation factor IF-2; Provisional	99.56
smart00010	124	small_GTPase Small GTPase of the Ras superfamily;	99.55
KOG3905	473	consensus Dynein light intermediate chain [Cell mo	99.55
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	99.54
PTZ00258	390	GTP-binding protein; Provisional	99.53
PRK13768	253	GTPase; Provisional	99.52
smart00275	342	G_alpha G protein alpha subunit. Subunit of G prot	99.52
KOG0458	603	consensus Elongation factor 1 alpha [Translation,	99.51
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	99.51
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	99.5
KOG1532	366	consensus GTPase XAB1, interacts with DNA repair p	99.5
COG5257	415	GCD11 Translation initiation factor 2, gamma subun	99.5
COG1217	603	TypA Predicted membrane GTPase involved in stress	99.49
PRK09435	332	membrane ATPase/protein kinase; Provisional	99.48
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	99.48
KOG3886	295	consensus GTP-binding protein [Signal transduction	99.48
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	99.47
PLN00116	843	translation elongation factor EF-2 subunit; Provis	99.47
PTZ00416	836	elongation factor 2; Provisional	99.46
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	99.46
PRK07560	731	elongation factor EF-2; Reviewed	99.46
PF05783	472	DLIC: Dynein light intermediate chain (DLIC); Inte	99.44
KOG3887	347	consensus Predicted small GTPase involved in nucle	99.43
PRK09601	364	GTP-binding protein YchF; Reviewed	99.43
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	99.42
KOG0461	522	consensus Selenocysteine-specific elongation facto	99.42
PF05049	376	IIGP: Interferon-inducible GTPase (IIGP); InterPro	99.37
COG4108	528	PrfC Peptide chain release factor RF-3 [Translatio	99.37
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	99.36
KOG0082	354	consensus G-protein alpha subunit (small G protein	99.36
TIGR02836	492	spore_IV_A stage IV sporulation protein A. A compa	99.34
KOG1144	1064	consensus Translation initiation factor 5B (eIF-5B	99.34
COG0480	697	FusA Translation elongation factors (GTPases) [Tra	99.32
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	99.3
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	99.3
KOG0410	410	consensus Predicted GTP binding protein [General f	99.29
COG3276	447	SelB Selenocysteine-specific translation elongatio	99.29
PF00735	281	Septin: Septin; InterPro: IPR000038 Septins consti	99.27
KOG1486	364	consensus GTP-binding protein DRG2 (ODN superfamil	99.26
COG0050	394	TufB GTPases - translation elongation factors [Tra	99.26
KOG0468	971	consensus U5 snRNP-specific protein [Translation,	99.26
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	99.23
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	99.23
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	99.2
TIGR00993	763	3a0901s04IAP86 chloroplast protein import componen	99.19
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	99.17
cd01900	274	YchF YchF subfamily. YchF is a member of the Obg f	99.15
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	99.13
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	99.13
PF00503	389	G-alpha: G-protein alpha subunit; InterPro: IPR001	99.12
COG0012	372	Predicted GTPase, probable translation factor [Tra	99.09
PRK12289	352	GTPase RsgA; Reviewed	99.09
COG5019	373	CDC3 Septin family protein [Cell division and chro	99.09
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	99.08
PRK12288	347	GTPase RsgA; Reviewed	99.06
PRK00098	298	GTPase RsgA; Reviewed	99.04
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	99.02
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	99.01
KOG1143	591	consensus Predicted translation elongation factor	99.0
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	98.99
KOG2655	366	consensus Septin family protein (P-loop GTPase) [C	98.93
KOG2486	320	consensus Predicted GTPase [General function predi	98.92
KOG0460	449	consensus Mitochondrial translation elongation fac	98.91
KOG1547	336	consensus Septin CDC10 and related P-loop GTPases	98.9
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.89
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.89
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	98.89
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	98.88
KOG1954	532	consensus Endocytosis/signaling protein EHD1 [Sign	98.85
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.84
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.84
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.82
COG1161	322	Predicted GTPases [General function prediction onl	98.8
COG5258	527	GTPBP1 GTPase [General function prediction only]	98.78
TIGR00092	368	GTP-binding protein YchF. This predicted GTP-bindi	98.76
COG5192	1077	BMS1 GTP-binding protein required for 40S ribosome	98.75
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	98.75
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.75
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.74
KOG0448	749	consensus Mitofusin 1 GTPase, involved in mitochon	98.72
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	98.72
KOG0085	359	consensus G protein subunit Galphaq/Galphay, small	98.71
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.7
KOG1487	358	consensus GTP-binding protein DRG1 (ODN superfamil	98.68
PF09547	492	Spore_IV_A: Stage IV sporulation protein A (spore_	98.65
KOG0466	466	consensus Translation initiation factor 2, gamma s	98.64
KOG1491	391	consensus Predicted GTP-binding protein (ODN super	98.62
KOG0099	379	consensus G protein subunit Galphas, small G prote	98.62
KOG0467	887	consensus Translation elongation factor 2/ribosome	98.61
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.61
KOG4273	418	consensus Uncharacterized conserved protein [Funct	98.61
cd01851	224	GBP Guanylate-binding protein (GBP), N-terminal do	98.59
PRK12288	347	GTPase RsgA; Reviewed	98.58
PRK10416	318	signal recognition particle-docking protein FtsY;	98.57
KOG0463	641	consensus GTP-binding protein GP-1 [General functi	98.57
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.56
PRK12289	352	GTPase RsgA; Reviewed	98.55
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.53
TIGR00064	272	ftsY signal recognition particle-docking protein F	98.52
PRK01889	356	GTPase RsgA; Reviewed	98.52
COG1162	301	Predicted GTPases [General function prediction onl	98.51
cd03112	158	CobW_like The function of this protein family is u	98.51
PRK13796	365	GTPase YqeH; Provisional	98.49
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.49
PRK13796	365	GTPase YqeH; Provisional	98.48
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	98.47
PRK14974	336	cell division protein FtsY; Provisional	98.46
KOG0464	753	consensus Elongation factor G [Translation, riboso	98.46
KOG0465	721	consensus Mitochondrial elongation factor [Transla	98.45
KOG0447	980	consensus Dynamin-like GTP binding protein [Genera	98.44
TIGR03348	1169	VI_IcmF type VI secretion protein IcmF. Members of	98.44
COG1162	301	Predicted GTPases [General function prediction onl	98.37
KOG0459	501	consensus Polypeptide release factor 3 [Translatio	98.36
KOG1424	562	consensus Predicted GTP-binding protein MMR1 [Gene	98.33
PRK13695	174	putative NTPase; Provisional	98.33
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.29
PRK00098	298	GTPase RsgA; Reviewed	98.27
COG3640	255	CooC CO dehydrogenase maturation factor [Cell divi	98.22
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	98.19
cd03114	148	ArgK-like The function of this protein family is u	98.19
PF11111	176	CENP-M: Centromere protein M (CENP-M); InterPro: I	98.17
cd03115	173	SRP The signal recognition particle (SRP) mediates	98.11
COG0523	323	Putative GTPases (G3E family) [General function pr	98.09
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	98.08
KOG0469	842	consensus Elongation factor 2 [Translation, riboso	98.08
KOG2484	435	consensus GTPase [General function prediction only	98.06
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	98.04
PF06858	58	NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte	98.03
PF02492	178	cobW: CobW/HypB/UreG, nucleotide-binding domain; I	97.99
KOG1534	273	consensus Putative transcription factor FET5 [Tran	97.97
COG3523	1188	IcmF Type VI protein secretion system component Va	97.96
PRK11537	318	putative GTP-binding protein YjiA; Provisional	97.95
cd02042	104	ParA ParA and ParB of Caulobacter crescentus belon	97.93
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	97.92
PRK00771	437	signal recognition particle protein Srp54; Provisi	97.92
KOG3859	406	consensus Septins (P-loop GTPases) [Cell cycle con	97.9
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	97.89
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	97.89
cd02038	139	FleN-like FleN is a member of the Fer4_NifH superf	97.89
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	97.88
PRK10867	433	signal recognition particle protein; Provisional	97.87
cd01983	99	Fer4_NifH The Fer4_NifH superfamily contains a var	97.86
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	97.86
PRK08118	167	topology modulation protein; Reviewed	97.86
TIGR00959	428	ffh signal recognition particle protein. This mode	97.85
PRK07261	171	topology modulation protein; Provisional	97.85
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	97.82
KOG2485	335	consensus Conserved ATP/GTP binding protein [Gener	97.81
PF13555	62	AAA_29: P-loop containing region of AAA domain	97.8
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	97.76
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	97.75
COG3845	501	ABC-type uncharacterized transport systems, ATPase	97.74
cd03111	106	CpaE_like This protein family consists of proteins	97.72
PRK14737	186	gmk guanylate kinase; Provisional	97.71
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	97.71
PRK14738	206	gmk guanylate kinase; Provisional	97.69
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	97.68
TIGR02475	341	CobW cobalamin biosynthesis protein CobW. A broade	97.68
KOG2423	572	consensus Nucleolar GTPase [General function predi	97.67
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	97.66
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	97.64
TIGR00235	207	udk uridine kinase. Model contains a number of lon	97.64
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	97.64
KOG0780	483	consensus Signal recognition particle, subunit Srp	97.63
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	97.62
PRK06217	183	hypothetical protein; Validated	97.62
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	97.61
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	97.6
PRK03839	180	putative kinase; Provisional	97.59
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	97.59
PF00005	137	ABC_tran: ABC transporter This structure is on hol	97.58
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	97.58
KOG1533	290	consensus Predicted GTPase [General function predi	97.57
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	97.57
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	97.55
PRK08727	233	hypothetical protein; Validated	97.53
PRK10646	153	ADP-binding protein; Provisional	97.52
PF00004	132	AAA: ATPase family associated with various cellula	97.5
PRK14532	188	adenylate kinase; Provisional	97.5
PRK14530	215	adenylate kinase; Provisional	97.5
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	97.49
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	97.49
PRK01889	356	GTPase RsgA; Reviewed	97.47
PF02367	123	UPF0079: Uncharacterised P-loop hydrolase UPF0079;	97.46
smart00382	148	AAA ATPases associated with a variety of cellular	97.46
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	97.45
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	97.45
PRK13949	169	shikimate kinase; Provisional	97.44
PRK14531	183	adenylate kinase; Provisional	97.44
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	97.43
COG0802	149	Predicted ATPase or kinase [General function predi	97.42
cd03110	179	Fer4_NifH_child This protein family's function is	97.41
PRK04195	482	replication factor C large subunit; Provisional	97.41
PRK00625	173	shikimate kinase; Provisional	97.41
PF03215	519	Rad17: Rad17 cell cycle checkpoint protein	97.41
COG0541	451	Ffh Signal recognition particle GTPase [Intracellu	97.41
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	97.41
KOG0744	423	consensus AAA+-type ATPase [Posttranslational modi	97.4
cd02036	179	MinD Bacterial cell division requires the formatio	97.4
KOG3347	176	consensus Predicted nucleotide kinase/nuclear prot	97.4
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	97.4
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	97.4
PRK02496	184	adk adenylate kinase; Provisional	97.39
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	97.38
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	97.38
PRK05416	288	glmZ(sRNA)-inactivating NTPase; Provisional	97.38
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	97.37
PRK05480	209	uridine/cytidine kinase; Provisional	97.37
COG1936	180	Predicted nucleotide kinase (related to CMP and AM	97.37
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	97.37
PTZ00088	229	adenylate kinase 1; Provisional	97.37
PRK13833	323	conjugal transfer protein TrbB; Provisional	97.36
PLN02200	234	adenylate kinase family protein	97.36
KOG1970	634	consensus Checkpoint RAD17-RFC complex, RAD17/RAD2	97.36
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	97.35
cd01428	194	ADK Adenylate kinase (ADK) catalyzes the reversibl	97.35
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	97.34
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	97.34
smart00072	184	GuKc Guanylate kinase homologues. Active enzymes c	97.34
COG3638	258	ABC-type phosphate/phosphonate transport system, A	97.33
PF04665	241	Pox_A32: Poxvirus A32 protein; InterPro: IPR006758	97.33
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	97.32
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	97.32

>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.3e-43  Score=231.42  Aligned_cols=170  Identities=44%  Similarity=0.716  Sum_probs=163.5

Q ss_pred             CCCCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCc
Q 030364            5 SNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAA   84 (178)
Q Consensus         5 ~~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d   84 (178)
                      +.-++.+||+++|.+|+|||+|+.+|..+.|.+.+..|.+.+...+.+.++++.+++++|||+|+++|+.....|+++++
T Consensus         4 ~~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ah   83 (205)
T KOG0084|consen    4 PEYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAH   83 (205)
T ss_pred             cccceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCC
Confidence            44567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCe-EEEEeCCCCCCHHHH
Q 030364           85 AAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLS-FLETSAKSAHNVNEL  163 (178)
Q Consensus        85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~~  163 (178)
                      ++|+|||+++.+||.++..|+.++.++...+.|.++|+||+|+.+.+.+..++++.|+..++++ ++++||+++.+++++
T Consensus        84 Gii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe~~  163 (205)
T KOG0084|consen   84 GIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDSTNVEDA  163 (205)
T ss_pred             eEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCccCHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999 999999999999999


Q ss_pred             HHHHHhhcccc
Q 030364          164 FYEIGDCTECF  174 (178)
Q Consensus       164 ~~~l~~~i~~~  174 (178)
                      |..|...+.+.
T Consensus       164 F~~la~~lk~~  174 (205)
T KOG0084|consen  164 FLTLAKELKQR  174 (205)
T ss_pred             HHHHHHHHHHh
Confidence            99998877654

>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.1e-41  Score=221.64  Aligned_cols=169  Identities=60%  Similarity=0.962  Sum_probs=161.6

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEE
Q 030364            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (178)
Q Consensus         8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i   87 (178)
                      ...+||+++|..++|||||+-++..+.|.+...+|.+..+....+.+++..++|.||||.|+++|+.+.+.|+++++++|
T Consensus         3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi   82 (200)
T KOG0092|consen    3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI   82 (200)
T ss_pred             cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence            45899999999999999999999999999988999999999999999999999999999999999999999999999999


Q ss_pred             EEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Q 030364           88 VVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI  167 (178)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  167 (178)
                      +|||+++.+||..++.|++++.+...+++-+.++|||+|+.+.+++..+++..+++..++.|+++||++|.|++++|..|
T Consensus        83 vvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~~I  162 (200)
T KOG0092|consen   83 VVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYAESQGLLFFETSAKTGENVNEIFQAI  162 (200)
T ss_pred             EEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEEecccccCHHHHHHHH
Confidence            99999999999999999999999888888888999999999999999999999999999999999999999999999999


Q ss_pred             Hhhcccccc
Q 030364          168 GDCTECFSL  176 (178)
Q Consensus       168 ~~~i~~~~~  176 (178)
                      .+.+-..+.
T Consensus       163 a~~lp~~~~  171 (200)
T KOG0092|consen  163 AEKLPCSDP  171 (200)
T ss_pred             HHhccCccc
Confidence            998876543

>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=5.4e-41  Score=222.05  Aligned_cols=168  Identities=42%  Similarity=0.721  Sum_probs=162.9

Q ss_pred             CCCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcE
Q 030364            6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAA   85 (178)
Q Consensus         6 ~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~   85 (178)
                      ..+..+||+++|.++||||+++.+|..+.+...+..|.+.++..+.+..++..+.+++|||.|+++|+.+...|+++|++
T Consensus         8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~g   87 (207)
T KOG0078|consen    8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMG   87 (207)
T ss_pred             CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCe
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Q 030364           86 AVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFY  165 (178)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  165 (178)
                      +++|||+++..||+++..|++.+..+..+++|.++||||+|+...+++..+.++.++.++|+++++|||++|.||+++|.
T Consensus        88 i~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~eaF~  167 (207)
T KOG0078|consen   88 ILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFETSAKTNFNIEEAFL  167 (207)
T ss_pred             eEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHHHhCCeEEEccccCCCCHHHHHH
Confidence            99999999999999999999999999989999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhccc
Q 030364          166 EIGDCTEC  173 (178)
Q Consensus       166 ~l~~~i~~  173 (178)
                      .|.+.+..
T Consensus       168 ~La~~i~~  175 (207)
T KOG0078|consen  168 SLARDILQ  175 (207)
T ss_pred             HHHHHHHh
Confidence            99998873

>cd04121 Rab40 Rab40 subfamily

Probab=100.00  E-value=9.7e-40  Score=221.41  Aligned_cols=167  Identities=30%  Similarity=0.546  Sum_probs=153.8

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEE
Q 030364            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA   86 (178)
Q Consensus         7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~   86 (178)
                      .+..+||+++|..|+|||||++++..+.+...+.++.+.++....+.+++..+.+++||++|++.|..++..+++++|++
T Consensus         3 ~~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~i   82 (189)
T cd04121           3 YDYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGI   82 (189)
T ss_pred             CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEE
Confidence            34579999999999999999999999988887888888888778888899999999999999999999999999999999


Q ss_pred             EEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Q 030364           87 VVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYE  166 (178)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  166 (178)
                      ++|||++++++|+.+..|+..+.... ++.|++||+||+|+...+.+..++++.+++.+++++++|||++|.|++++|++
T Consensus        83 llVfD~t~~~Sf~~~~~w~~~i~~~~-~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F~~  161 (189)
T cd04121          83 ILVYDITNRWSFDGIDRWIKEIDEHA-PGVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFTE  161 (189)
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHH
Confidence            99999999999999999999997763 68999999999999887888889999999999999999999999999999999


Q ss_pred             HHhhcccc
Q 030364          167 IGDCTECF  174 (178)
Q Consensus       167 l~~~i~~~  174 (178)
                      |++.+...
T Consensus       162 l~~~i~~~  169 (189)
T cd04121         162 LARIVLMR  169 (189)
T ss_pred             HHHHHHHh
Confidence            99877543

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>cd04120 Rab12 Rab12 subfamily

Probab=100.00  E-value=1.5e-39  Score=222.39  Aligned_cols=162  Identities=36%  Similarity=0.693  Sum_probs=150.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEEE
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY   90 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~   90 (178)
                      +.|+++|..|+|||||++++..+.+...+.++.+.++....+.+++..+.+++||++|++.|..++..+++++|++|+||
T Consensus         1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf   80 (202)
T cd04120           1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY   80 (202)
T ss_pred             CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence            36899999999999999999999998888899998888888899999999999999999999999999999999999999


Q ss_pred             ECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHc-CCeEEEEeCCCCCCHHHHHHHHHh
Q 030364           91 DITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQEN-GLSFLETSAKSAHNVNELFYEIGD  169 (178)
Q Consensus        91 d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~~~~l~~  169 (178)
                      |++++++|+.+..|+..+.....++.|+++|+||+|+...+++...++..+++.. ++.|++|||++|.|++++|.+|++
T Consensus        81 Dvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l~~  160 (202)
T cd04120          81 DITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVD  160 (202)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHH
Confidence            9999999999999999887776678999999999999887888888888898875 789999999999999999999998


Q ss_pred             hcc
Q 030364          170 CTE  172 (178)
Q Consensus       170 ~i~  172 (178)
                      .+.
T Consensus       161 ~~~  163 (202)
T cd04120         161 DIL  163 (202)
T ss_pred             HHH
Confidence            764

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.6e-39  Score=211.70  Aligned_cols=171  Identities=43%  Similarity=0.727  Sum_probs=160.4

Q ss_pred             cCCCCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCC
Q 030364            4 TSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGA   83 (178)
Q Consensus         4 ~~~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~   83 (178)
                      ....-+..|++++|..++|||||++++..+.+...|.+|.|.+...+.+.+.+..+.+++|||.|+++|+.+.+.|++++
T Consensus        16 ~~~~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds   95 (221)
T KOG0094|consen   16 FGAPLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS   95 (221)
T ss_pred             cCccceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCC
Confidence            34455679999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cEEEEEEECCCHhHHHHHHHHHHHHHHhCCC-CceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHH
Q 030364           84 AAAVVVYDITSMDSFERAKKWVQELQRQGNP-NLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNE  162 (178)
Q Consensus        84 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  162 (178)
                      .++|+|||+++..||++...|++.+...... ++-+++|+||.|+.+.+++..+++...++++++.|+++||+.|.||++
T Consensus        96 ~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~etsak~g~NVk~  175 (221)
T KOG0094|consen   96 SVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIETSAKAGENVKQ  175 (221)
T ss_pred             eEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhCcEEEEecccCCCCHHH
Confidence            9999999999999999999999999887665 588889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhcccc
Q 030364          163 LFYEIGDCTECF  174 (178)
Q Consensus       163 ~~~~l~~~i~~~  174 (178)
                      +|..|...+...
T Consensus       176 lFrrIaa~l~~~  187 (221)
T KOG0094|consen  176 LFRRIAAALPGM  187 (221)
T ss_pred             HHHHHHHhccCc
Confidence            999988776544

>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=6.4e-40  Score=211.99  Aligned_cols=165  Identities=42%  Similarity=0.766  Sum_probs=158.9

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEE
Q 030364            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA   86 (178)
Q Consensus         7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~   86 (178)
                      ..+.+|++++|..|+|||+|+.+++.+.|.+.+..|.+.++-...+.++++.+++++||+.|++.|++....|++.+.+.
T Consensus         3 ~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Ga   82 (216)
T KOG0098|consen    3 YAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGA   82 (216)
T ss_pred             ccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcce
Confidence            45689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Q 030364           87 VVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYE  166 (178)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  166 (178)
                      ++|||++.+++|..+..|+..+.++..++..+++++||+|+...+++..++.+.|++++++.++++||++++|++|.|..
T Consensus        83 lLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF~n  162 (216)
T KOG0098|consen   83 LLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFMETSAKTAENVEEAFIN  162 (216)
T ss_pred             EEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccccccHHHHHHHHHHcCceeehhhhhhhhhHHHHHHH
Confidence            99999999999999999999999998899999999999999999999999999999999999999999999999999987


Q ss_pred             HHhhc
Q 030364          167 IGDCT  171 (178)
Q Consensus       167 l~~~i  171 (178)
                      ....|
T Consensus       163 ta~~I  167 (216)
T KOG0098|consen  163 TAKEI  167 (216)
T ss_pred             HHHHH
Confidence            76654

>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=2e-39  Score=204.90  Aligned_cols=169  Identities=42%  Similarity=0.717  Sum_probs=159.6

Q ss_pred             CCCCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCc
Q 030364            5 SNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAA   84 (178)
Q Consensus         5 ~~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d   84 (178)
                      +.....+||+++|.+|+|||||+.+|..+.+.+....+.+.+...+.+.+++..+++.+|||.|+++|+.+.+.|++++.
T Consensus         6 s~~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaq   85 (209)
T KOG0080|consen    6 SGYDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQ   85 (209)
T ss_pred             cCcceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCc
Confidence            44456899999999999999999999999999988888999999999999999999999999999999999999999999


Q ss_pred             EEEEEEECCCHhHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHH
Q 030364           85 AAVVVYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNEL  163 (178)
Q Consensus        85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~  163 (178)
                      ++|+|||++.+++|..+..|.+++..++ .+++..++|+||.|....+.+..++...|++.+++-|+++||++.+|+...
T Consensus        86 GiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~  165 (209)
T KOG0080|consen   86 GIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARKHRCLFIECSAKTRENVQCC  165 (209)
T ss_pred             eeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHHhhCcEEEEcchhhhccHHHH
Confidence            9999999999999999999999998876 467778999999999888999999999999999999999999999999999


Q ss_pred             HHHHHhhccc
Q 030364          164 FYEIGDCTEC  173 (178)
Q Consensus       164 ~~~l~~~i~~  173 (178)
                      |+.|+.+|-+
T Consensus       166 FeelveKIi~  175 (209)
T KOG0080|consen  166 FEELVEKIIE  175 (209)
T ss_pred             HHHHHHHHhc
Confidence            9999988764

>cd04122 Rab14 Rab14 subfamily

Probab=100.00  E-value=5.6e-38  Score=209.74  Aligned_cols=163  Identities=42%  Similarity=0.746  Sum_probs=150.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEE
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVV   89 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v   89 (178)
                      .+||+++|++|+|||||++++..+.+.+.+.++.+.+.....+..++..+.+.+||+||++.+...+..+++++|++|+|
T Consensus         2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   81 (166)
T cd04122           2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV   81 (166)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence            47999999999999999999999999888888888888777788888899999999999999999999999999999999


Q ss_pred             EECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHh
Q 030364           90 YDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIGD  169 (178)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  169 (178)
                      ||++++++++.+..|+..+.....++.|+++|+||+|+...+.+..++...+++..+++++++||++|.|++++|.++++
T Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l~~  161 (166)
T cd04122          82 YDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAK  161 (166)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            99999999999999999887776678999999999999888888888899999999999999999999999999999998


Q ss_pred             hcc
Q 030364          170 CTE  172 (178)
Q Consensus       170 ~i~  172 (178)
                      .+-
T Consensus       162 ~~~  164 (166)
T cd04122         162 KIY  164 (166)
T ss_pred             HHh
Confidence            763

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=100.00  E-value=4.7e-38  Score=212.20  Aligned_cols=162  Identities=29%  Similarity=0.525  Sum_probs=146.2

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEE
Q 030364            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA   86 (178)
Q Consensus         7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~   86 (178)
                      ++..+||+++|.+|+|||||++++..+.+.+.+.|+.+..+. ..+.+++..+.+.+||++|++.|..+++.+++++|++
T Consensus         2 ~~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~-~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~   80 (182)
T cd04172           2 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV   80 (182)
T ss_pred             CcceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeE-EEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEE
Confidence            467899999999999999999999999998888999886654 5677889999999999999999999999999999999


Q ss_pred             EEEEECCCHhHHHHH-HHHHHHHHHhCCCCceEEEEEeCCCCcc------------ccccCHHHHHHHHHHcCC-eEEEE
Q 030364           87 VVVYDITSMDSFERA-KKWVQELQRQGNPNLIMFLVANKVDLEE------------KRKVKNEEGELYAQENGL-SFLET  152 (178)
Q Consensus        87 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~  152 (178)
                      ++|||+++++||+++ ..|+..+.... ++.|+++|+||+|+.+            .+.+..+++..+++.+++ +|++|
T Consensus        81 ilvyDit~~~Sf~~~~~~w~~~i~~~~-~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~  159 (182)
T cd04172          81 LICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC  159 (182)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEEC
Confidence            999999999999997 78999988764 6799999999999854            346888999999999996 99999


Q ss_pred             eCCCCCC-HHHHHHHHHhh
Q 030364          153 SAKSAHN-VNELFYEIGDC  170 (178)
Q Consensus       153 Sa~~~~~-i~~~~~~l~~~  170 (178)
                      ||++|.| |+++|..+++.
T Consensus       160 SAk~~~n~v~~~F~~~~~~  178 (182)
T cd04172         160 SALQSENSVRDIFHVATLA  178 (182)
T ss_pred             CcCCCCCCHHHHHHHHHHH
Confidence            9999998 99999998874

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>KOG0394 consensus Ras-related GTPase [General function prediction only]

Probab=100.00  E-value=8.4e-39  Score=206.40  Aligned_cols=168  Identities=37%  Similarity=0.684  Sum_probs=155.6

Q ss_pred             CCCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcE
Q 030364            6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAA   85 (178)
Q Consensus         6 ~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~   85 (178)
                      .+...+||+++|.+|+|||||++++..++|...+..+.+.+...+.+.+++..+.+++|||+|+++|.++...+++++|.
T Consensus         5 ~K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDc   84 (210)
T KOG0394|consen    5 RKRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADC   84 (210)
T ss_pred             CcccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCce
Confidence            44558999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEECCCHhHHHHHHHHHHHHHHhCC----CCceEEEEEeCCCCccc--cccCHHHHHHHHHHcC-CeEEEEeCCCCC
Q 030364           86 AVVVYDITSMDSFERAKKWVQELQRQGN----PNLIMFLVANKVDLEEK--RKVKNEEGELYAQENG-LSFLETSAKSAH  158 (178)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~~~ivv~nK~D~~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~  158 (178)
                      .++|||++++.||+.+..|.+++..+..    ...|+||+|||.|+.+.  +.++...++.||...+ +|||++||+...
T Consensus        85 Cvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~~  164 (210)
T KOG0394|consen   85 CVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEAT  164 (210)
T ss_pred             EEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEecccccc
Confidence            9999999999999999999999877654    46899999999999763  7889999999999876 899999999999


Q ss_pred             CHHHHHHHHHhhccc
Q 030364          159 NVNELFYEIGDCTEC  173 (178)
Q Consensus       159 ~i~~~~~~l~~~i~~  173 (178)
                      ||+++|..+.+...+
T Consensus       165 NV~~AFe~ia~~aL~  179 (210)
T KOG0394|consen  165 NVDEAFEEIARRALA  179 (210)
T ss_pred             cHHHHHHHHHHHHHh
Confidence            999999999886553

>cd04133 Rop_like Rop subfamily

Probab=100.00  E-value=6.2e-38  Score=210.43  Aligned_cols=161  Identities=32%  Similarity=0.571  Sum_probs=144.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEEE
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY   90 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~   90 (178)
                      +||+++|.+|+|||||+.++..+.+...+.+|.+..+ ...+..++..+++.+||++|++.|..++..+++++|++|+||
T Consensus         2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvy   80 (176)
T cd04133           2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF   80 (176)
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEE
Confidence            6899999999999999999999999888999988766 445677888999999999999999999999999999999999


Q ss_pred             ECCCHhHHHHH-HHHHHHHHHhCCCCceEEEEEeCCCCcccc----------ccCHHHHHHHHHHcCC-eEEEEeCCCCC
Q 030364           91 DITSMDSFERA-KKWVQELQRQGNPNLIMFLVANKVDLEEKR----------KVKNEEGELYAQENGL-SFLETSAKSAH  158 (178)
Q Consensus        91 d~~~~~s~~~~-~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~----------~~~~~~~~~~~~~~~~-~~~~~Sa~~~~  158 (178)
                      |+++++||+++ ..|+..+.... ++.|+++|+||+|+.+.+          .+..+++..+++..++ +|++|||++|.
T Consensus        81 d~~~~~Sf~~~~~~w~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~  159 (176)
T cd04133          81 SLISRASYENVLKKWVPELRHYA-PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQ  159 (176)
T ss_pred             EcCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCccc
Confidence            99999999998 68999987764 579999999999996542          4778899999999997 69999999999


Q ss_pred             CHHHHHHHHHhhccc
Q 030364          159 NVNELFYEIGDCTEC  173 (178)
Q Consensus       159 ~i~~~~~~l~~~i~~  173 (178)
                      ||+++|+.+++.+.+
T Consensus       160 nV~~~F~~~~~~~~~  174 (176)
T cd04133         160 NVKAVFDAAIKVVLQ  174 (176)
T ss_pred             CHHHHHHHHHHHHhc
Confidence            999999999987644

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>cd04117 Rab15 Rab15 subfamily

Probab=100.00  E-value=1.9e-37  Score=206.17  Aligned_cols=160  Identities=38%  Similarity=0.697  Sum_probs=148.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEEE
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY   90 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~   90 (178)
                      +||+++|++|+|||||++++..+.+.+.+.++.+.++....+..++..+.+.+||++|++.+...+..+++.+|++++||
T Consensus         1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04117           1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY   80 (161)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence            48999999999999999999999998888899888887788888888899999999999999999999999999999999


Q ss_pred             ECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHhh
Q 030364           91 DITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIGDC  170 (178)
Q Consensus        91 d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  170 (178)
                      |++++++|+.+..|+..+......+.|+++|+||+|+...+.+..+++..+++.++++|+++||++|.|++++|.+|.+.
T Consensus        81 d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~  160 (161)
T cd04117          81 DISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRLTEL  160 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHhh
Confidence            99999999999999999887765689999999999998888888889999999999999999999999999999999875

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.8e-38  Score=207.35  Aligned_cols=167  Identities=41%  Similarity=0.717  Sum_probs=160.5

Q ss_pred             CCCCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCc
Q 030364            5 SNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAA   84 (178)
Q Consensus         5 ~~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d   84 (178)
                      .+-++.+||+++|.+++|||-|+.++..++|.....+|.+.+.....+.++++.++.+||||.|+++|+.....|++++.
T Consensus         9 ~~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAv   88 (222)
T KOG0087|consen    9 EEYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAV   88 (222)
T ss_pred             cccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccc
Confidence            34567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Q 030364           85 AAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELF  164 (178)
Q Consensus        85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  164 (178)
                      +.++|||++.+.+|+++.+|+.+++.+..++.++++|+||+|+.+.+.+..+++..++...+..++++||+.+.+++++|
T Consensus        89 GAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f~EtSAl~~tNVe~aF  168 (222)
T KOG0087|consen   89 GALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFFLETSALDATNVEKAF  168 (222)
T ss_pred             eeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhccccchhhhHhHHHhcCceEEEecccccccHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhc
Q 030364          165 YEIGDCT  171 (178)
Q Consensus       165 ~~l~~~i  171 (178)
                      ..++..|
T Consensus       169 ~~~l~~I  175 (222)
T KOG0087|consen  169 ERVLTEI  175 (222)
T ss_pred             HHHHHHH
Confidence            8877655

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=100.00  E-value=2.9e-37  Score=206.51  Aligned_cols=164  Identities=44%  Similarity=0.742  Sum_probs=150.6

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEE
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVV   88 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~   88 (178)
                      ..+||+++|++|+|||||++++.++.+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++.+|++++
T Consensus         2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~   81 (167)
T cd01867           2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIIL   81 (167)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEE
Confidence            46899999999999999999999999988889998888877788888888999999999999999999999999999999


Q ss_pred             EEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Q 030364           89 VYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIG  168 (178)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  168 (178)
                      |||++++++|+.+..|+..+......+.|+++|+||+|+.+...+..++...++..++++++++||++|.|++++|++|.
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~  161 (167)
T cd01867          82 VYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKANINVEEAFFTLA  161 (167)
T ss_pred             EEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            99999999999999999999887667899999999999987777777778888888999999999999999999999999


Q ss_pred             hhcc
Q 030364          169 DCTE  172 (178)
Q Consensus       169 ~~i~  172 (178)
                      +.+.
T Consensus       162 ~~~~  165 (167)
T cd01867         162 KDIK  165 (167)
T ss_pred             HHHH
Confidence            8774

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=100.00  E-value=2.1e-37  Score=207.85  Aligned_cols=163  Identities=31%  Similarity=0.529  Sum_probs=146.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEE
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVV   89 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v   89 (178)
                      .+||+++|.+|+|||||++++..+.+...+.++.+..+ ...+.+++..+.+.+||+||++.+..++..++..+|++|+|
T Consensus         2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv   80 (172)
T cd04141           2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAY-KQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC   80 (172)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceE-EEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence            47999999999999999999999999887888887555 44567788889999999999999999999999999999999


Q ss_pred             EECCCHhHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Q 030364           90 YDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIG  168 (178)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  168 (178)
                      ||++++++|+.+..|+..+.... .++.|+++|+||+|+.+.+.+..++...+++.+++++++|||++|.|++++|++|+
T Consensus        81 ~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l~  160 (172)
T cd04141          81 YSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGLV  160 (172)
T ss_pred             EECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHHHH
Confidence            99999999999998888877643 46899999999999987778888889999999999999999999999999999999


Q ss_pred             hhccc
Q 030364          169 DCTEC  173 (178)
Q Consensus       169 ~~i~~  173 (178)
                      +.+..
T Consensus       161 ~~~~~  165 (172)
T cd04141         161 REIRR  165 (172)
T ss_pred             HHHHH
Confidence            87653

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>cd01865 Rab3 Rab3 subfamily

Probab=100.00  E-value=4.8e-37  Score=205.06  Aligned_cols=162  Identities=36%  Similarity=0.645  Sum_probs=147.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEEE
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY   90 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~   90 (178)
                      +||+++|++|+|||||++++.++++...+.++.+.++....+..++..+.+.+||++|++.+...+..+++.+|++++||
T Consensus         2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~   81 (165)
T cd01865           2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY   81 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence            79999999999999999999999998888888887777767777788899999999999999999999999999999999


Q ss_pred             ECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHhh
Q 030364           91 DITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIGDC  170 (178)
Q Consensus        91 d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  170 (178)
                      |.+++++++.+..|+..+.....++.|+++|+||+|+.+.+.+..++...+++..+++++++||++|.|++++|++|.+.
T Consensus        82 d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~  161 (165)
T cd01865          82 DITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAKENINVKQVFERLVDI  161 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            99999999999999999887766789999999999998777777788888888889999999999999999999999886


Q ss_pred             cc
Q 030364          171 TE  172 (178)
Q Consensus       171 i~  172 (178)
                      +.
T Consensus       162 ~~  163 (165)
T cd01865         162 IC  163 (165)
T ss_pred             HH
Confidence            53

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=100.00  E-value=4.8e-37  Score=213.32  Aligned_cols=163  Identities=25%  Similarity=0.463  Sum_probs=146.0

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEE
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVV   88 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~   88 (178)
                      ..+||+++|.+|+|||+|++++..+.+...+.|+.+..+. ..+.+++..+.+.+|||+|++.|..+++.+++++|++|+
T Consensus        12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~-~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIl   90 (232)
T cd04174          12 MRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-AGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLL   90 (232)
T ss_pred             eeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeE-EEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEE
Confidence            5789999999999999999999999999889999887664 457788999999999999999999999999999999999


Q ss_pred             EEECCCHhHHHH-HHHHHHHHHHhCCCCceEEEEEeCCCCcc------------ccccCHHHHHHHHHHcCC-eEEEEeC
Q 030364           89 VYDITSMDSFER-AKKWVQELQRQGNPNLIMFLVANKVDLEE------------KRKVKNEEGELYAQENGL-SFLETSA  154 (178)
Q Consensus        89 v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~Sa  154 (178)
                      |||++++++|+. +..|+..+.... ++.|+++|+||+|+..            .+.+..+++..+++.+++ .|++|||
T Consensus        91 VyDit~~~Sf~~~~~~w~~~i~~~~-~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtSA  169 (232)
T cd04174          91 CFDISRPETVDSALKKWKAEIMDYC-PSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLECSA  169 (232)
T ss_pred             EEECCChHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEccC
Confidence            999999999998 478999888764 6789999999999864            356888899999999998 6999999


Q ss_pred             CCCC-CHHHHHHHHHhhccc
Q 030364          155 KSAH-NVNELFYEIGDCTEC  173 (178)
Q Consensus       155 ~~~~-~i~~~~~~l~~~i~~  173 (178)
                      ++|. |++++|..++..+.+
T Consensus       170 ktg~~~V~e~F~~~~~~~~~  189 (232)
T cd04174         170 FTSEKSIHSIFRSASLLCLN  189 (232)
T ss_pred             CcCCcCHHHHHHHHHHHHHH
Confidence            9997 899999999887644

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04131 Rnd Rnd subfamily

Probab=100.00  E-value=4.5e-37  Score=207.00  Aligned_cols=159  Identities=29%  Similarity=0.517  Sum_probs=142.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEE
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVV   89 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v   89 (178)
                      ++||+++|.+|+|||||++++..+.+...+.|+.+..+. ..+.+++..+.+.+||++|++.|....+.+++++|++++|
T Consensus         1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilv   79 (178)
T cd04131           1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYT-ASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLIC   79 (178)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEE-EEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEE
Confidence            479999999999999999999999998888888876654 5677888999999999999999999999999999999999


Q ss_pred             EECCCHhHHHHH-HHHHHHHHHhCCCCceEEEEEeCCCCcc------------ccccCHHHHHHHHHHcCC-eEEEEeCC
Q 030364           90 YDITSMDSFERA-KKWVQELQRQGNPNLIMFLVANKVDLEE------------KRKVKNEEGELYAQENGL-SFLETSAK  155 (178)
Q Consensus        90 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~Sa~  155 (178)
                      ||+++++||+.+ ..|+..+.... ++.|+++|+||+|+.+            .+++..+++.++++.+++ +|++|||+
T Consensus        80 fdit~~~Sf~~~~~~w~~~i~~~~-~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~  158 (178)
T cd04131          80 FDISRPETLDSVLKKWRGEIQEFC-PNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAF  158 (178)
T ss_pred             EECCChhhHHHHHHHHHHHHHHHC-CCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccC
Confidence            999999999995 78999888764 6899999999999854            245788899999999997 89999999


Q ss_pred             CCCC-HHHHHHHHHhh
Q 030364          156 SAHN-VNELFYEIGDC  170 (178)
Q Consensus       156 ~~~~-i~~~~~~l~~~  170 (178)
                      +|++ ++++|..+++.
T Consensus       159 ~~~~~v~~~F~~~~~~  174 (178)
T cd04131         159 TSEKSVRDIFHVATMA  174 (178)
T ss_pred             cCCcCHHHHHHHHHHH
Confidence            9995 99999999884

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.5e-38  Score=196.04  Aligned_cols=166  Identities=35%  Similarity=0.628  Sum_probs=158.5

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEE
Q 030364            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (178)
Q Consensus         8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i   87 (178)
                      +..+|++++|+..+|||||+.+..+..+...+-++.+.+...+.+.-..+.+++++|||.|++.|+.....++++++++|
T Consensus        19 DymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfi   98 (193)
T KOG0093|consen   19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFI   98 (193)
T ss_pred             cceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEE
Confidence            45779999999999999999999999999999999999999998888888999999999999999999999999999999


Q ss_pred             EEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Q 030364           88 VVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI  167 (178)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  167 (178)
                      ++||+++.+||..++.|...+...+..+.|+++++||||+.+++.+..+..+.+++.+|+.||++||+.+.|++.+|+.+
T Consensus        99 LmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefFEtSaK~NinVk~~Fe~l  178 (193)
T KOG0093|consen   99 LMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVISHERGRQLADQLGFEFFETSAKENINVKQVFERL  178 (193)
T ss_pred             EEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccceeeeHHHHHHHHHHhChHHhhhcccccccHHHHHHHH
Confidence            99999999999999999999999988999999999999999999999999999999999999999999999999999999


Q ss_pred             Hhhccc
Q 030364          168 GDCTEC  173 (178)
Q Consensus       168 ~~~i~~  173 (178)
                      +..|..
T Consensus       179 v~~Ic~  184 (193)
T KOG0093|consen  179 VDIICD  184 (193)
T ss_pred             HHHHHH
Confidence            887754

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=100.00  E-value=7.3e-37  Score=204.34  Aligned_cols=163  Identities=44%  Similarity=0.744  Sum_probs=149.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEE
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVV   89 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v   89 (178)
                      .+||+++|++|+|||||++++.++.+...+.++.+.+.....+..++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus         2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v   81 (166)
T cd01869           2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV   81 (166)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence            47999999999999999999999988877888888888778888888889999999999999999999999999999999


Q ss_pred             EECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHh
Q 030364           90 YDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIGD  169 (178)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  169 (178)
                      ||+++++++..+..|+..+.....++.|+++++||+|+.....+..++...+++..+++++++||++|.|++++|.+|++
T Consensus        82 ~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~  161 (166)
T cd01869          82 YDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTMAR  161 (166)
T ss_pred             EECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHHHH
Confidence            99999999999999999988776578999999999999877777778888999999999999999999999999999998


Q ss_pred             hcc
Q 030364          170 CTE  172 (178)
Q Consensus       170 ~i~  172 (178)
                      .+.
T Consensus       162 ~~~  164 (166)
T cd01869         162 EIK  164 (166)
T ss_pred             HHH
Confidence            774

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=100.00  E-value=7.2e-37  Score=203.57  Aligned_cols=161  Identities=39%  Similarity=0.707  Sum_probs=153.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEEEE
Q 030364           12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYD   91 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d   91 (178)
                      ||+++|++++|||||++++.++.+.+.+.++.+.+.....+..++..+.+.+||++|++.+......+++.+|++|+|||
T Consensus         1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd   80 (162)
T PF00071_consen    1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD   80 (162)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred             CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            79999999999999999999999999999999889999999999999999999999999999999999999999999999


Q ss_pred             CCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHhhc
Q 030364           92 ITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIGDCT  171 (178)
Q Consensus        92 ~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  171 (178)
                      +++++|++.+..|+..+......+.|++|++||.|+...+++..+++..+++.++++|+++||+++.|+.++|..+++.+
T Consensus        81 ~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~~i~~i  160 (162)
T PF00071_consen   81 VTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQELIRKI  160 (162)
T ss_dssp             TTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccceeeeccccccccccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            99999999999999999988766799999999999988889999999999999999999999999999999999999987


Q ss_pred             c
Q 030364          172 E  172 (178)
Q Consensus       172 ~  172 (178)
                      .
T Consensus       161 ~  161 (162)
T PF00071_consen  161 L  161 (162)
T ss_dssp             H
T ss_pred             h
Confidence            4

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>cd01875 RhoG RhoG subfamily

Probab=100.00  E-value=7.6e-37  Score=208.36  Aligned_cols=163  Identities=28%  Similarity=0.464  Sum_probs=143.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEE
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVV   89 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v   89 (178)
                      .+||+++|.+|+|||||+.++..+.+...+.|+.+..+. ..+.+++..+.+.+||++|++.|..+++.+++++|++|+|
T Consensus         3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv   81 (191)
T cd01875           3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYS-AQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC   81 (191)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeE-EEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence            589999999999999999999999998888899886553 4456788899999999999999999999999999999999


Q ss_pred             EECCCHhHHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCcccc------------ccCHHHHHHHHHHcC-CeEEEEeCC
Q 030364           90 YDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEEKR------------KVKNEEGELYAQENG-LSFLETSAK  155 (178)
Q Consensus        90 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~ivv~nK~D~~~~~------------~~~~~~~~~~~~~~~-~~~~~~Sa~  155 (178)
                      ||+++++||+.+. .|+..+... .++.|+++|+||+|+.+..            .+..+++..+++.++ ++|++|||+
T Consensus        82 ydit~~~Sf~~~~~~w~~~i~~~-~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk  160 (191)
T cd01875          82 FSIASPSSYENVRHKWHPEVCHH-CPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSAL  160 (191)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCC
Confidence            9999999999997 577777665 3689999999999996542            356678889999888 599999999


Q ss_pred             CCCCHHHHHHHHHhhcccc
Q 030364          156 SAHNVNELFYEIGDCTECF  174 (178)
Q Consensus       156 ~~~~i~~~~~~l~~~i~~~  174 (178)
                      +|.|++++|.+|++.+...
T Consensus       161 ~g~~v~e~f~~l~~~~~~~  179 (191)
T cd01875         161 NQDGVKEVFAEAVRAVLNP  179 (191)
T ss_pred             CCCCHHHHHHHHHHHHhcc
Confidence            9999999999999877553

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=100.00  E-value=1.1e-36  Score=209.32  Aligned_cols=163  Identities=34%  Similarity=0.653  Sum_probs=147.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeC-CeEEEEEEEeCCCchhhhccchhhhcCCcEEEEE
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLN-EVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVV   89 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v   89 (178)
                      +||+++|++|+|||||+++|.++.+...+.++.+.++....+.++ +..+.+.+||++|++.+..++..+++++|++|+|
T Consensus         1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv   80 (201)
T cd04107           1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV   80 (201)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence            589999999999999999999999888888999888877777887 7889999999999999999999999999999999


Q ss_pred             EECCCHhHHHHHHHHHHHHHHhC----CCCceEEEEEeCCCCccccccCHHHHHHHHHHcC-CeEEEEeCCCCCCHHHHH
Q 030364           90 YDITSMDSFERAKKWVQELQRQG----NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENG-LSFLETSAKSAHNVNELF  164 (178)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~~~~~----~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~~  164 (178)
                      ||++++++|+.+..|+..+....    ..+.|+++|+||+|+...+.+..++...+++..+ .+++++||++|.|++++|
T Consensus        81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f  160 (201)
T cd04107          81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEAM  160 (201)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHHH
Confidence            99999999999999988876532    3678999999999997667777888899999988 699999999999999999


Q ss_pred             HHHHhhccc
Q 030364          165 YEIGDCTEC  173 (178)
Q Consensus       165 ~~l~~~i~~  173 (178)
                      ++|++.+..
T Consensus       161 ~~l~~~l~~  169 (201)
T cd04107         161 RFLVKNILA  169 (201)
T ss_pred             HHHHHHHHH
Confidence            999987754

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04113 Rab4 Rab4 subfamily

Probab=100.00  E-value=2.1e-36  Score=201.17  Aligned_cols=161  Identities=43%  Similarity=0.741  Sum_probs=148.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEEE
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY   90 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~   90 (178)
                      +||+++|++|+|||||++++.++.+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++++||
T Consensus         1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04113           1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence            58999999999999999999999988888888888888888888888899999999999999999999999999999999


Q ss_pred             ECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHhh
Q 030364           91 DITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIGDC  170 (178)
Q Consensus        91 d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  170 (178)
                      |+++++++..+..|+..+.....++.|+++++||.|+.....+..++...+++..+++++++||+++.|++++|+++++.
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~~~~  160 (161)
T cd04113          81 DITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCARS  160 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHh
Confidence            99999999999999998887767899999999999998777788888888999999999999999999999999999886


Q ss_pred             c
Q 030364          171 T  171 (178)
Q Consensus       171 i  171 (178)
                      +
T Consensus       161 ~  161 (161)
T cd04113         161 I  161 (161)
T ss_pred             C
Confidence            4

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>cd04127 Rab27A Rab27a subfamily

Probab=100.00  E-value=1.7e-36  Score=205.11  Aligned_cols=165  Identities=32%  Similarity=0.577  Sum_probs=147.5

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeC----------CeEEEEEEEeCCCchhhhccch
Q 030364            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLN----------EVTIKFDIWDTAGQERYHSLAP   77 (178)
Q Consensus         8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~i~d~~g~~~~~~~~~   77 (178)
                      ++.+||+++|++|||||||++++.++.+.+.+.++.+.++....+.+.          +..+.+.+||+||++.+...+.
T Consensus         2 ~~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~   81 (180)
T cd04127           2 DYLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTT   81 (180)
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHH
Confidence            357999999999999999999999999988888888877766665553          4568899999999999999999


Q ss_pred             hhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCC
Q 030364           78 MYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKS  156 (178)
Q Consensus        78 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  156 (178)
                      .+++++|++++|||+++++++..+..|+..+.... .++.|+++|+||+|+.+.+.+..++...+++..+++++++||++
T Consensus        82 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~  161 (180)
T cd04127          82 AFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIPYFETSAAT  161 (180)
T ss_pred             HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCeEEEEeCCC
Confidence            99999999999999999999999999999987754 46789999999999987777888888999999999999999999


Q ss_pred             CCCHHHHHHHHHhhcc
Q 030364          157 AHNVNELFYEIGDCTE  172 (178)
Q Consensus       157 ~~~i~~~~~~l~~~i~  172 (178)
                      |.|++++|++|++.+-
T Consensus       162 ~~~v~~l~~~l~~~~~  177 (180)
T cd04127         162 GTNVEKAVERLLDLVM  177 (180)
T ss_pred             CCCHHHHHHHHHHHHH
Confidence            9999999999998653

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=4.3e-38  Score=196.33  Aligned_cols=165  Identities=38%  Similarity=0.639  Sum_probs=156.5

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEE
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVV   88 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~   88 (178)
                      .-++.+|+|.+|+|||+|+.++..+.|...|..+.+.+...+.+.++|..++++|||+.|++.|+.+...|+++.+++++
T Consensus         7 hLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~v   86 (198)
T KOG0079|consen    7 HLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIV   86 (198)
T ss_pred             HHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEE
Confidence            45688999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Q 030364           89 VYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIG  168 (178)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  168 (178)
                      |||+++.+||.++.+|++++... ++..|-++|+||+|.++.+.+..++++.|+...++.+|++|++..++++..|.-|.
T Consensus        87 VYDVTn~ESF~Nv~rWLeei~~n-cdsv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~FETSaKe~~NvE~mF~cit  165 (198)
T KOG0079|consen   87 VYDVTNGESFNNVKRWLEEIRNN-CDSVPKVLVGNKNDDPERRVVDTEDARAFALQMGIELFETSAKENENVEAMFHCIT  165 (198)
T ss_pred             EEECcchhhhHhHHHHHHHHHhc-CccccceecccCCCCccceeeehHHHHHHHHhcCchheehhhhhcccchHHHHHHH
Confidence            99999999999999999999987 45888999999999999999999999999999999999999999999999999988


Q ss_pred             hhcccc
Q 030364          169 DCTECF  174 (178)
Q Consensus       169 ~~i~~~  174 (178)
                      ++....
T Consensus       166 ~qvl~~  171 (198)
T KOG0079|consen  166 KQVLQA  171 (198)
T ss_pred             HHHHHH
Confidence            876543

>cd01868 Rab11_like Rab11-like

Probab=100.00  E-value=2.7e-36  Score=201.39  Aligned_cols=163  Identities=44%  Similarity=0.752  Sum_probs=149.1

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEE
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVV   88 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~   88 (178)
                      ..+||+++|.+|||||||++++.++.+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++.++++++
T Consensus         2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   81 (165)
T cd01868           2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALL   81 (165)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEE
Confidence            35799999999999999999999999887788898888888888888888899999999999999999999999999999


Q ss_pred             EEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Q 030364           89 VYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIG  168 (178)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  168 (178)
                      |||++++.+++.+..|+..+......+.|+++|+||+|+...+.+..++...+++..+++++++||++|.|++++|++|+
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~  161 (165)
T cd01868          82 VYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQLL  161 (165)
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence            99999999999999999998887656799999999999987777777888888888899999999999999999999998


Q ss_pred             hhc
Q 030364          169 DCT  171 (178)
Q Consensus       169 ~~i  171 (178)
                      +.+
T Consensus       162 ~~i  164 (165)
T cd01868         162 TEI  164 (165)
T ss_pred             HHh
Confidence            765

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=100.00  E-value=2.4e-36  Score=201.94  Aligned_cols=162  Identities=29%  Similarity=0.632  Sum_probs=147.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEEE
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY   90 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~   90 (178)
                      +||+++|++|+|||||++++.++.+.+.+.++.+.++....+..++..+.+.+||+||++.+...+..+++.+|++|+||
T Consensus         1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (168)
T cd04119           1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY   80 (168)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence            58999999999999999999999998889999998888888888888999999999999999999999999999999999


Q ss_pred             ECCCHhHHHHHHHHHHHHHHhCC-----CCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Q 030364           91 DITSMDSFERAKKWVQELQRQGN-----PNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFY  165 (178)
Q Consensus        91 d~~~~~s~~~~~~~~~~~~~~~~-----~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  165 (178)
                      |++++++++.+..|+..+.....     .+.|+++|+||+|+.....+..++...++...+++++++||++|.|++++|+
T Consensus        81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  160 (168)
T cd04119          81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQ  160 (168)
T ss_pred             ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence            99999999999999999887643     5789999999999976566777788888888899999999999999999999


Q ss_pred             HHHhhcc
Q 030364          166 EIGDCTE  172 (178)
Q Consensus       166 ~l~~~i~  172 (178)
                      +|.+.+-
T Consensus       161 ~l~~~l~  167 (168)
T cd04119         161 TLFSSIV  167 (168)
T ss_pred             HHHHHHh
Confidence            9998763

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>cd04128 Spg1 Spg1p

Probab=100.00  E-value=1.7e-36  Score=204.95  Aligned_cols=164  Identities=26%  Similarity=0.458  Sum_probs=143.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEEE
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY   90 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~   90 (178)
                      +||+++|.+|+|||||++++..+.+...+.++.+.++....+..++..+.+.+||++|++.|...+..+++++|++++||
T Consensus         1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~   80 (182)
T cd04128           1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF   80 (182)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence            58999999999999999999999998889999998888888888998999999999999999999999999999999999


Q ss_pred             ECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcc-----ccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Q 030364           91 DITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEE-----KRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFY  165 (178)
Q Consensus        91 d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~-----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  165 (178)
                      |++++++++.+..|+..+........| ++|+||+|+..     ......++...+++..+++++++||++|.|++++|+
T Consensus        81 D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf~  159 (182)
T cd04128          81 DLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFK  159 (182)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            999999999999999998876545566 67899999842     111224566778888899999999999999999999


Q ss_pred             HHHhhccccc
Q 030364          166 EIGDCTECFS  175 (178)
Q Consensus       166 ~l~~~i~~~~  175 (178)
                      +|.+.+-...
T Consensus       160 ~l~~~l~~~~  169 (182)
T cd04128         160 IVLAKAFDLP  169 (182)
T ss_pred             HHHHHHHhcC
Confidence            9998776543

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>cd04110 Rab35 Rab35 subfamily

Probab=100.00  E-value=2.9e-36  Score=206.81  Aligned_cols=167  Identities=38%  Similarity=0.647  Sum_probs=150.8

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEE
Q 030364            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (178)
Q Consensus         8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i   87 (178)
                      +..+||+++|++|+|||||++++.++.+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++.+++++
T Consensus         4 ~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~ii   83 (199)
T cd04110           4 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVI   83 (199)
T ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEE
Confidence            45799999999999999999999999988778888888887778888888889999999999999999999999999999


Q ss_pred             EEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Q 030364           88 VVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI  167 (178)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  167 (178)
                      +|||++++++++.+..|+..+... .+..|++||+||+|+.....+..++...+++..+++++++||++|.|++++|++|
T Consensus        84 lv~D~~~~~s~~~~~~~~~~i~~~-~~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~~l  162 (199)
T cd04110          84 VVYDVTNGESFVNVKRWLQEIEQN-CDDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNCI  162 (199)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHh-CCCCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHHHH
Confidence            999999999999999999988765 3678999999999998777777788888888889999999999999999999999


Q ss_pred             Hhhccccc
Q 030364          168 GDCTECFS  175 (178)
Q Consensus       168 ~~~i~~~~  175 (178)
                      .+.+...+
T Consensus       163 ~~~~~~~~  170 (199)
T cd04110         163 TELVLRAK  170 (199)
T ss_pred             HHHHHHhh
Confidence            99876543

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>cd01864 Rab19 Rab19 subfamily

Probab=100.00  E-value=4.2e-36  Score=200.48  Aligned_cols=163  Identities=42%  Similarity=0.726  Sum_probs=147.5

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEE
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVV   88 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~   88 (178)
                      +.+||+++|++|+|||||++++..+.+...+.++.+.+.....+.+++..+.+.+||+||++.+...+..+++.+|++++
T Consensus         2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll   81 (165)
T cd01864           2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII   81 (165)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence            46899999999999999999999998888788888877777888888888899999999999999999999999999999


Q ss_pred             EEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCC-eEEEEeCCCCCCHHHHHHHH
Q 030364           89 VYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGL-SFLETSAKSAHNVNELFYEI  167 (178)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~l  167 (178)
                      |||++++.+++.+..|+..+......+.|+++|+||+|+...+++.......+++..++ .++++||++|.|++++|++|
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~l  161 (165)
T cd01864          82 AYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFLLM  161 (165)
T ss_pred             EEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHHHH
Confidence            99999999999999999999876667899999999999987777777788888888775 78999999999999999999


Q ss_pred             Hhhc
Q 030364          168 GDCT  171 (178)
Q Consensus       168 ~~~i  171 (178)
                      .+.+
T Consensus       162 ~~~l  165 (165)
T cd01864         162 ATEL  165 (165)
T ss_pred             HHhC
Confidence            8753

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04136 Rap_like Rap-like subfamily

Probab=100.00  E-value=2.6e-36  Score=200.98  Aligned_cols=161  Identities=35%  Similarity=0.566  Sum_probs=141.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEE
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVV   89 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v   89 (178)
                      .+||+++|.+|||||||++++..+.+...+.++.+ +.....+..++..+.+.+||+||++.+...+..+++++|++++|
T Consensus         1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   79 (163)
T cd04136           1 EYKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLV   79 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEE
Confidence            37999999999999999999999988777777766 33455667788889999999999999999999999999999999


Q ss_pred             EECCCHhHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Q 030364           90 YDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIG  168 (178)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  168 (178)
                      ||++++++++.+..|+..+.... .++.|+++|+||+|+.+.+.+..++...+++.++++++++||++|.|++++|++|+
T Consensus        80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~  159 (163)
T cd04136          80 YSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSKINVDEVFADLV  159 (163)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Confidence            99999999999999998887753 46899999999999977666777777788888889999999999999999999998


Q ss_pred             hhc
Q 030364          169 DCT  171 (178)
Q Consensus       169 ~~i  171 (178)
                      +.+
T Consensus       160 ~~~  162 (163)
T cd04136         160 RQI  162 (163)
T ss_pred             Hhc
Confidence            765

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd04109 Rab28 Rab28 subfamily

Probab=100.00  E-value=4.8e-36  Score=207.95  Aligned_cols=164  Identities=35%  Similarity=0.536  Sum_probs=148.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCC-eEEEEEEEeCCCchhhhccchhhhcCCcEEEEE
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNE-VTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVV   89 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v   89 (178)
                      +||+++|.+|+|||||+++|.++.+...+.++.+.++....+.+++ ..+.+.+||++|++.+...+..+++.+|++|+|
T Consensus         1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV   80 (215)
T cd04109           1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV   80 (215)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence            5899999999999999999999999888999999888887777754 578999999999999999999999999999999


Q ss_pred             EECCCHhHHHHHHHHHHHHHHhCC---CCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Q 030364           90 YDITSMDSFERAKKWVQELQRQGN---PNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYE  166 (178)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~~~~~~---~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  166 (178)
                      ||++++++|+.+..|+..+.....   .+.|+++|+||+|+.+.+.+..++...+++.++++++++||++|.|++++|++
T Consensus        81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~~  160 (215)
T cd04109          81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQQ  160 (215)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence            999999999999999999877532   35689999999999877788888889999999999999999999999999999


Q ss_pred             HHhhcccc
Q 030364          167 IGDCTECF  174 (178)
Q Consensus       167 l~~~i~~~  174 (178)
                      |++.+...
T Consensus       161 l~~~l~~~  168 (215)
T cd04109         161 LAAELLGV  168 (215)
T ss_pred             HHHHHHhc
Confidence            99987654

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>cd04125 RabA_like RabA-like subfamily

Probab=100.00  E-value=6.9e-36  Score=203.40  Aligned_cols=163  Identities=39%  Similarity=0.651  Sum_probs=149.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEEE
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY   90 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~   90 (178)
                      +||+++|.+|+|||||++++.++.+...+.++.+.++....+.+++..+.+.+||++|.+.+...+..+++.+|++++||
T Consensus         1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~   80 (188)
T cd04125           1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY   80 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence            58999999999999999999999988778888888887778888888899999999999999999999999999999999


Q ss_pred             ECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHhh
Q 030364           91 DITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIGDC  170 (178)
Q Consensus        91 d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  170 (178)
                      |++++++++.+..|+..+......+.|+++++||+|+.+...+..+....+++..+++++++||++|.|++++|.+|++.
T Consensus        81 d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~~~  160 (188)
T cd04125          81 DVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLVKL  160 (188)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence            99999999999999999988766678999999999998777777888888888889999999999999999999999987


Q ss_pred             ccc
Q 030364          171 TEC  173 (178)
Q Consensus       171 i~~  173 (178)
                      +..
T Consensus       161 ~~~  163 (188)
T cd04125         161 IIK  163 (188)
T ss_pred             HHH
Confidence            754

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04175 Rap1 Rap1 subgroup

Probab=100.00  E-value=3.9e-36  Score=200.46  Aligned_cols=162  Identities=35%  Similarity=0.595  Sum_probs=143.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEE
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVV   89 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v   89 (178)
                      ++||+++|.+|+|||||++++..+.+...+.++.+..+ ...+..++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus         1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv   79 (164)
T cd04175           1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLV   79 (164)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEE
Confidence            47999999999999999999999888777777776554 35567788889999999999999999999999999999999


Q ss_pred             EECCCHhHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Q 030364           90 YDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIG  168 (178)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  168 (178)
                      ||.+++.+++.+..|+..+.... ..+.|+++|+||+|+.....+...+...+++.++++++++||++|.|++++|.+|+
T Consensus        80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~  159 (164)
T cd04175          80 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLV  159 (164)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHH
Confidence            99999999999999998887653 46899999999999987766777777788888899999999999999999999999


Q ss_pred             hhcc
Q 030364          169 DCTE  172 (178)
Q Consensus       169 ~~i~  172 (178)
                      +.+.
T Consensus       160 ~~l~  163 (164)
T cd04175         160 RQIN  163 (164)
T ss_pred             HHhh
Confidence            8764

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>PLN03110 Rab GTPase; Provisional

Probab=100.00  E-value=7.9e-36  Score=206.82  Aligned_cols=167  Identities=41%  Similarity=0.708  Sum_probs=153.8

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEE
Q 030364            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA   86 (178)
Q Consensus         7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~   86 (178)
                      .+..+||+++|++|+|||||+++|.++.+...+.++.+.++....+.+++..+.+.+||++|++.+...+..+++.++++
T Consensus         9 ~~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~   88 (216)
T PLN03110          9 YDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGA   88 (216)
T ss_pred             cCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEE
Confidence            34679999999999999999999999998877889999888888888899899999999999999999999999999999


Q ss_pred             EEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Q 030364           87 VVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYE  166 (178)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  166 (178)
                      ++|||++++++++.+..|+..+......+.|+++|+||+|+...+.+..+....++..++++++++||++|.|++++|++
T Consensus        89 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~lf~~  168 (216)
T PLN03110         89 LLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQT  168 (216)
T ss_pred             EEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999999988876678999999999999877778888888999889999999999999999999999


Q ss_pred             HHhhccc
Q 030364          167 IGDCTEC  173 (178)
Q Consensus       167 l~~~i~~  173 (178)
                      |++.+.+
T Consensus       169 l~~~i~~  175 (216)
T PLN03110        169 ILLEIYH  175 (216)
T ss_pred             HHHHHHH
Confidence            9987754

>cd01866 Rab2 Rab2 subfamily

Probab=100.00  E-value=1.1e-35  Score=199.10  Aligned_cols=163  Identities=42%  Similarity=0.767  Sum_probs=149.5

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEE
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVV   88 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~   88 (178)
                      ..+||+++|.+|+|||||++++.++.+...+.++.+.+.....+..++..+.+.+||+||++.+......+++.+|++++
T Consensus         3 ~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~   82 (168)
T cd01866           3 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALL   82 (168)
T ss_pred             cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEE
Confidence            45899999999999999999999998888788888888888888888888999999999999999999999999999999


Q ss_pred             EEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Q 030364           89 VYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIG  168 (178)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  168 (178)
                      |||++++++++.+..|+..+.....++.|+++|+||.|+.....+..++...++...+++++++||+++.|++++|.+++
T Consensus        83 v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~~~  162 (168)
T cd01866          83 VYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFINTA  162 (168)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            99999999999999999999887668899999999999987677777888888888999999999999999999999998


Q ss_pred             hhc
Q 030364          169 DCT  171 (178)
Q Consensus       169 ~~i  171 (178)
                      +.+
T Consensus       163 ~~~  165 (168)
T cd01866         163 KEI  165 (168)
T ss_pred             HHH
Confidence            875

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>cd01874 Cdc42 Cdc42 subfamily

Probab=100.00  E-value=5.5e-36  Score=201.49  Aligned_cols=158  Identities=28%  Similarity=0.489  Sum_probs=138.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEEE
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY   90 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~   90 (178)
                      +||+++|.+|+|||||++++..+.+...+.|+.+..+. ..+..++..+.+.+||++|++.+...+..+++++|++|+||
T Consensus         2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~   80 (175)
T cd01874           2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF   80 (175)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE-EEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEE
Confidence            68999999999999999999999998888898876664 34567888899999999999999999999999999999999


Q ss_pred             ECCCHhHHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCccc------------cccCHHHHHHHHHHcC-CeEEEEeCCC
Q 030364           91 DITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEEK------------RKVKNEEGELYAQENG-LSFLETSAKS  156 (178)
Q Consensus        91 d~~~~~s~~~~~-~~~~~~~~~~~~~~~~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~  156 (178)
                      |++++++|+.+. .|+..+... .++.|+++|+||+|+...            +.+..+++..+++..+ +.|++|||++
T Consensus        81 d~~~~~s~~~~~~~w~~~i~~~-~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~t  159 (175)
T cd01874          81 SVVSPSSFENVKEKWVPEITHH-CPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALT  159 (175)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHh-CCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCC
Confidence            999999999996 587777665 367999999999998543            4567778888888877 7999999999


Q ss_pred             CCCHHHHHHHHHhh
Q 030364          157 AHNVNELFYEIGDC  170 (178)
Q Consensus       157 ~~~i~~~~~~l~~~  170 (178)
                      |.|++++|+.+++.
T Consensus       160 g~~v~~~f~~~~~~  173 (175)
T cd01874         160 QKGLKNVFDEAILA  173 (175)
T ss_pred             CCCHHHHHHHHHHH
Confidence            99999999999874

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>PTZ00369 Ras-like protein; Provisional

Probab=100.00  E-value=7.2e-36  Score=203.37  Aligned_cols=165  Identities=37%  Similarity=0.576  Sum_probs=146.4

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEE
Q 030364            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (178)
Q Consensus         8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i   87 (178)
                      .+.+||+++|.+|+|||||++++.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.+..++..+++.+|+++
T Consensus         3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~ii   81 (189)
T PTZ00369          3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFL   81 (189)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEE
Confidence            4579999999999999999999999988877878777655 456678888899999999999999999999999999999


Q ss_pred             EEEECCCHhHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Q 030364           88 VVYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYE  166 (178)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  166 (178)
                      +|||++++++++.+..|+..+.... .++.|+++|+||+|+.+...+...+...+++.++++++++||++|.|++++|.+
T Consensus        82 lv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~~  161 (189)
T PTZ00369         82 CVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYE  161 (189)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHH
Confidence            9999999999999999998887653 458899999999999777777777788888888899999999999999999999


Q ss_pred             HHhhccc
Q 030364          167 IGDCTEC  173 (178)
Q Consensus       167 l~~~i~~  173 (178)
                      |++.+..
T Consensus       162 l~~~l~~  168 (189)
T PTZ00369        162 LVREIRK  168 (189)
T ss_pred             HHHHHHH
Confidence            9987654

>cd04106 Rab23_lke Rab23-like subfamily

Probab=100.00  E-value=1.3e-35  Score=197.42  Aligned_cols=159  Identities=35%  Similarity=0.637  Sum_probs=144.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeC--CeEEEEEEEeCCCchhhhccchhhhcCCcEEEE
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLN--EVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVV   88 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~   88 (178)
                      +||+++|.+|+|||||++++.++.+.+.+.++.+.++....+.++  +..+.+.+||+||++.+...+..+++.+|++++
T Consensus         1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~   80 (162)
T cd04106           1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence            589999999999999999999998888888888888777777776  778899999999999999999999999999999


Q ss_pred             EEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Q 030364           89 VYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIG  168 (178)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  168 (178)
                      |||++++++++.+..|+..+... ..+.|+++|+||+|+.....+..++...+++..+++++++||++|.|++++|++|.
T Consensus        81 v~d~~~~~s~~~l~~~~~~~~~~-~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~  159 (162)
T cd04106          81 VFSTTDRESFEAIESWKEKVEAE-CGDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYLA  159 (162)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHh-CCCCCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence            99999999999999999888654 46899999999999987777777888889999999999999999999999999998


Q ss_pred             hh
Q 030364          169 DC  170 (178)
Q Consensus       169 ~~  170 (178)
                      +.
T Consensus       160 ~~  161 (162)
T cd04106         160 EK  161 (162)
T ss_pred             Hh
Confidence            65

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=100.00  E-value=1.7e-35  Score=198.30  Aligned_cols=163  Identities=33%  Similarity=0.621  Sum_probs=144.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEEEE
Q 030364           12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYD   91 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d   91 (178)
                      ||+++|.+|+|||||++++..+.+...+.++.+.++....+.+++..+.+++||+||++.|...+..+++++|++++|||
T Consensus         2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   81 (170)
T cd04108           2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD   81 (170)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence            79999999999999999999999998899999988887888888888999999999999999999999999999999999


Q ss_pred             CCCHhHHHHHHHHHHHHHHhCC-CCceEEEEEeCCCCccccc--cCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Q 030364           92 ITSMDSFERAKKWVQELQRQGN-PNLIMFLVANKVDLEEKRK--VKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIG  168 (178)
Q Consensus        92 ~~~~~s~~~~~~~~~~~~~~~~-~~~~~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  168 (178)
                      ++++++++.+..|+..+.+... .+.|+++|+||+|+.....  ...++...+++.++++++++||++|.|++++|+.|.
T Consensus        82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~  161 (170)
T cd04108          82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRVA  161 (170)
T ss_pred             CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence            9999999999999998866533 4578899999999865433  345566778888889999999999999999999999


Q ss_pred             hhcccc
Q 030364          169 DCTECF  174 (178)
Q Consensus       169 ~~i~~~  174 (178)
                      +.+..+
T Consensus       162 ~~~~~~  167 (170)
T cd04108         162 ALTFEL  167 (170)
T ss_pred             HHHHHc
Confidence            887543

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.5e-36  Score=190.56  Aligned_cols=165  Identities=41%  Similarity=0.701  Sum_probs=157.6

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEE
Q 030364            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA   86 (178)
Q Consensus         7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~   86 (178)
                      -+.-+|++++|+.|.|||+|+.++..+++......+.+.+.-.+.+.+.++.+++++||+.|+++|+.....|++++.+.
T Consensus         6 YDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGA   85 (214)
T KOG0086|consen    6 YDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGA   85 (214)
T ss_pred             hhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccce
Confidence            35678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Q 030364           87 VVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYE  166 (178)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  166 (178)
                      ++|||++++++|+.+..|+...+....+++-+++++||.|+.+++++...++..|+++..+.+.++|+++|+|++|.|-.
T Consensus        86 lLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~flETSa~TGeNVEEaFl~  165 (214)
T KOG0086|consen   86 LLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLK  165 (214)
T ss_pred             EEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhhHHHHHhhhcccceeeeeecccccccHHHHHHH
Confidence            99999999999999999999999988899999999999999999999999999999999999999999999999999987


Q ss_pred             HHhhc
Q 030364          167 IGDCT  171 (178)
Q Consensus       167 l~~~i  171 (178)
                      ..+.|
T Consensus       166 c~~tI  170 (214)
T KOG0086|consen  166 CARTI  170 (214)
T ss_pred             HHHHH
Confidence            76654

>cd04112 Rab26 Rab26 subfamily

Probab=100.00  E-value=1.3e-35  Score=202.46  Aligned_cols=164  Identities=40%  Similarity=0.713  Sum_probs=146.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCcCCC-CccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEE
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVKGQFFD-FQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVV   89 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v   89 (178)
                      +||+++|++|+|||||++++..+.+.. .+.++.+.+.....+.+++..+.+.+||+||++.+...+..+++.+|++|+|
T Consensus         1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v   80 (191)
T cd04112           1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL   80 (191)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence            589999999999999999999988753 5677777777777778888899999999999999999889999999999999


Q ss_pred             EECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHh
Q 030364           90 YDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIGD  169 (178)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  169 (178)
                      ||++++++++++..|+..+......+.|+++|+||+|+...+.+..++...+++.++++|+++||++|.|++++|.+|.+
T Consensus        81 ~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~~  160 (191)
T cd04112          81 YDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAK  160 (191)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence            99999999999999999988876668999999999999776677777888888888999999999999999999999998


Q ss_pred             hcccc
Q 030364          170 CTECF  174 (178)
Q Consensus       170 ~i~~~  174 (178)
                      .+...
T Consensus       161 ~~~~~  165 (191)
T cd04112         161 ELKHR  165 (191)
T ss_pred             HHHHh
Confidence            77654

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=100.00  E-value=1.3e-35  Score=206.03  Aligned_cols=163  Identities=33%  Similarity=0.520  Sum_probs=145.1

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEE
Q 030364            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (178)
Q Consensus         8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i   87 (178)
                      ...+||+++|.+|||||||++++..+.+...+.++.+.++....+..++..+.+.+||++|++.|..++..+++.+|++|
T Consensus        11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i   90 (219)
T PLN03071         11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (219)
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence            56899999999999999999999999998889999998888777777888899999999999999999999999999999


Q ss_pred             EEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Q 030364           88 VVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI  167 (178)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  167 (178)
                      +|||++++++++.+..|+..+... .++.|+++|+||+|+.. ..+..+.. .+++..+++|++|||++|.|++++|.+|
T Consensus        91 lvfD~~~~~s~~~i~~w~~~i~~~-~~~~piilvgNK~Dl~~-~~v~~~~~-~~~~~~~~~~~e~SAk~~~~i~~~f~~l  167 (219)
T PLN03071         91 IMFDVTARLTYKNVPTWHRDLCRV-CENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYL  167 (219)
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHHh-CCCCcEEEEEEchhhhh-ccCCHHHH-HHHHhcCCEEEEcCCCCCCCHHHHHHHH
Confidence            999999999999999999999876 46899999999999864 33333444 6777788999999999999999999999


Q ss_pred             Hhhccc
Q 030364          168 GDCTEC  173 (178)
Q Consensus       168 ~~~i~~  173 (178)
                      ++.+..
T Consensus       168 ~~~~~~  173 (219)
T PLN03071        168 ARKLAG  173 (219)
T ss_pred             HHHHHc
Confidence            988754

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=100.00  E-value=1.8e-35  Score=197.55  Aligned_cols=160  Identities=35%  Similarity=0.581  Sum_probs=141.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEEE
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY   90 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~   90 (178)
                      +||+++|++|||||||++++..+.+...+.++.+.+.....+..++..+.+.+||++|++.+...+..++..+|++|+||
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (166)
T cd00877           1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF   80 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence            58999999999999999999999888888888888887777777888899999999999999999999999999999999


Q ss_pred             ECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHhh
Q 030364           91 DITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIGDC  170 (178)
Q Consensus        91 d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  170 (178)
                      |++++++++.+..|+..+..... +.|+++|+||+|+.. ..+. .+...+++..+++++++||++|.|++++|++|++.
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~-~~piiiv~nK~Dl~~-~~~~-~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~  157 (166)
T cd00877          81 DVTSRVTYKNVPNWHRDLVRVCG-NIPIVLCGNKVDIKD-RKVK-AKQITFHRKKNLQYYEISAKSNYNFEKPFLWLARK  157 (166)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCC-CCcEEEEEEchhccc-ccCC-HHHHHHHHHcCCEEEEEeCCCCCChHHHHHHHHHH
Confidence            99999999999999999987744 899999999999873 3333 34456777788999999999999999999999988


Q ss_pred             ccc
Q 030364          171 TEC  173 (178)
Q Consensus       171 i~~  173 (178)
                      +.+
T Consensus       158 ~~~  160 (166)
T cd00877         158 LLG  160 (166)
T ss_pred             HHh
Confidence            764

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>cd04111 Rab39 Rab39 subfamily

Probab=100.00  E-value=1.8e-35  Score=204.23  Aligned_cols=163  Identities=37%  Similarity=0.717  Sum_probs=146.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEe-CCeEEEEEEEeCCCchhhhccchhhhcCCcEEEE
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSL-NEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVV   88 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~   88 (178)
                      .+||+++|++|+|||||++++.++.+...+.++.+.+.....+.+ ++..+.+++||++|++.+...+..+++.+|++++
T Consensus         2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil   81 (211)
T cd04111           2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL   81 (211)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence            589999999999999999999999988878888888877777766 4667899999999999999999999999999999


Q ss_pred             EEECCCHhHHHHHHHHHHHHHHhCC-CCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Q 030364           89 VYDITSMDSFERAKKWVQELQRQGN-PNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI  167 (178)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  167 (178)
                      |||++++++++.+..|+..+..... ...|+++|+||+|+.....+..++...+++.++++++++||++|.|++++|++|
T Consensus        82 v~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l  161 (211)
T cd04111          82 VFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELL  161 (211)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHH
Confidence            9999999999999999998876543 457789999999998877788888899999999999999999999999999999


Q ss_pred             Hhhcc
Q 030364          168 GDCTE  172 (178)
Q Consensus       168 ~~~i~  172 (178)
                      .+.+.
T Consensus       162 ~~~~~  166 (211)
T cd04111         162 TQEIY  166 (211)
T ss_pred             HHHHH
Confidence            98764

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04144 Ras2 Ras2 subfamily

Probab=100.00  E-value=7.6e-36  Score=203.43  Aligned_cols=162  Identities=33%  Similarity=0.541  Sum_probs=142.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEEEE
Q 030364           12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYD   91 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d   91 (178)
                      ||+++|.+|+|||||+++|..+.+...+.++.+..+ ......++..+.+.+||+||++.|...+..+++.+|++++|||
T Consensus         1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   79 (190)
T cd04144           1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSY-RKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYS   79 (190)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEE
Confidence            689999999999999999999988877777776554 3455678888899999999999999999999999999999999


Q ss_pred             CCCHhHHHHHHHHHHHHHHhC---CCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Q 030364           92 ITSMDSFERAKKWVQELQRQG---NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIG  168 (178)
Q Consensus        92 ~~~~~s~~~~~~~~~~~~~~~---~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  168 (178)
                      ++++++++.+..|+..+....   .++.|+++|+||+|+.....+...+...++...+++++++||++|.|++++|++|+
T Consensus        80 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~  159 (190)
T cd04144          80 ITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLV  159 (190)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence            999999999999998886643   35789999999999987777777778888888899999999999999999999999


Q ss_pred             hhcccc
Q 030364          169 DCTECF  174 (178)
Q Consensus       169 ~~i~~~  174 (178)
                      +.+...
T Consensus       160 ~~l~~~  165 (190)
T cd04144         160 RALRQQ  165 (190)
T ss_pred             HHHHHh
Confidence            877543

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04116 Rab9 Rab9 subfamily

Probab=100.00  E-value=3.8e-35  Score=196.75  Aligned_cols=164  Identities=35%  Similarity=0.598  Sum_probs=145.4

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEE
Q 030364            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA   86 (178)
Q Consensus         7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~   86 (178)
                      +...+||+++|++|+|||||++++.++.+.+.+.++.+.+.....+..++..+.+.+||+||++.+..++..+++.+|++
T Consensus         2 ~~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~   81 (170)
T cd04116           2 KSSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCC   81 (170)
T ss_pred             CceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEE
Confidence            34679999999999999999999999998887888888777777788889999999999999999999999999999999


Q ss_pred             EEEEECCCHhHHHHHHHHHHHHHHhC----CCCceEEEEEeCCCCccccccCHHHHHHHHHHcC-CeEEEEeCCCCCCHH
Q 030364           87 VVVYDITSMDSFERAKKWVQELQRQG----NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENG-LSFLETSAKSAHNVN  161 (178)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~  161 (178)
                      ++|||++++++++.+..|+..+....    ..+.|+++|+||+|+. .+.+..++...+++.++ ++++++||++|.|++
T Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~  160 (170)
T cd04116          82 LLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP-ERQVSTEEAQAWCRENGDYPYFETSAKDATNVA  160 (170)
T ss_pred             EEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc-ccccCHHHHHHHHHHCCCCeEEEEECCCCCCHH
Confidence            99999999999999999988876643    2578999999999986 45566778888888887 589999999999999


Q ss_pred             HHHHHHHhhc
Q 030364          162 ELFYEIGDCT  171 (178)
Q Consensus       162 ~~~~~l~~~i  171 (178)
                      ++|+++++.+
T Consensus       161 ~~~~~~~~~~  170 (170)
T cd04116         161 AAFEEAVRRV  170 (170)
T ss_pred             HHHHHHHhhC
Confidence            9999998764

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>cd04176 Rap2 Rap2 subgroup

Probab=100.00  E-value=1.5e-35  Score=197.35  Aligned_cols=161  Identities=36%  Similarity=0.585  Sum_probs=141.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEE
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVV   89 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v   89 (178)
                      ++||+++|.+|+|||||++++..+.+.+.+.++.+ ......+..++..+.+.+||+||.+.+..++..+++++|++++|
T Consensus         1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v   79 (163)
T cd04176           1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVV   79 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEE
Confidence            47999999999999999999999998877777665 34456677788888999999999999999999999999999999


Q ss_pred             EECCCHhHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Q 030364           90 YDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIG  168 (178)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  168 (178)
                      ||++++++++++..|+..+.... ..+.|+++|+||+|+.....+...+...+++..+++++++||++|.|++++|.+|.
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~  159 (163)
T cd04176          80 YSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIV  159 (163)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence            99999999999999998887753 36899999999999976666666677888888889999999999999999999998


Q ss_pred             hhc
Q 030364          169 DCT  171 (178)
Q Consensus       169 ~~i  171 (178)
                      +.+
T Consensus       160 ~~l  162 (163)
T cd04176         160 RQM  162 (163)
T ss_pred             Hhc
Confidence            765

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>smart00175 RAB Rab subfamily of small GTPases

Probab=100.00  E-value=3.5e-35  Score=195.69  Aligned_cols=162  Identities=48%  Similarity=0.832  Sum_probs=148.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEEE
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY   90 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~   90 (178)
                      +||+++|++|+|||||++++.+..+...+.++.+.++....+..++..+.+.+||+||++.+......+++.+|++++||
T Consensus         1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~   80 (164)
T smart00175        1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence            58999999999999999999999888778888888888888888888889999999999999999999999999999999


Q ss_pred             ECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHhh
Q 030364           91 DITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIGDC  170 (178)
Q Consensus        91 d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  170 (178)
                      |++++.+++.+..|+..+.....++.|+++++||+|+....++..+....+++..+++++++|+++|.|+++++++|.+.
T Consensus        81 d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~~~  160 (164)
T smart00175       81 DITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELARE  160 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence            99999999999999999888766789999999999988767777778888888899999999999999999999999987


Q ss_pred             cc
Q 030364          171 TE  172 (178)
Q Consensus       171 i~  172 (178)
                      +.
T Consensus       161 ~~  162 (164)
T smart00175      161 IL  162 (164)
T ss_pred             Hh
Confidence            64

Rab GTPases are implicated in vesicle trafficking.

>PLN03108 Rab family protein; Provisional

Probab=100.00  E-value=4.4e-35  Score=202.35  Aligned_cols=165  Identities=40%  Similarity=0.746  Sum_probs=150.6

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEE
Q 030364            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (178)
Q Consensus         8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i   87 (178)
                      ...+||+++|++|+|||||++++..+.+...+.++.+.++....+.+++..+.+.+||++|++.+...+..+++.+|+++
T Consensus         4 ~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~v   83 (210)
T PLN03108          4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (210)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence            45799999999999999999999999888878888888887778888888899999999999999999999999999999


Q ss_pred             EEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Q 030364           88 VVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI  167 (178)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  167 (178)
                      +|||++++++++.+..|+..+.....++.|+++++||+|+.+.+.+..++...+++.++++++++||+++.|++++|.++
T Consensus        84 lv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f~~l  163 (210)
T PLN03108         84 LVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKT  163 (210)
T ss_pred             EEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence            99999999999999999988877666789999999999998877788888899999999999999999999999999999


Q ss_pred             Hhhcc
Q 030364          168 GDCTE  172 (178)
Q Consensus       168 ~~~i~  172 (178)
                      ++.+-
T Consensus       164 ~~~~~  168 (210)
T PLN03108        164 AAKIY  168 (210)
T ss_pred             HHHHH
Confidence            88764

>cd01861 Rab6 Rab6 subfamily

Probab=100.00  E-value=4.6e-35  Score=194.67  Aligned_cols=161  Identities=45%  Similarity=0.771  Sum_probs=146.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEEE
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY   90 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~   90 (178)
                      .||+++|++|+|||||++++++..+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++.+|++++||
T Consensus         1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~   80 (161)
T cd01861           1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence            48999999999999999999999988878888888888888888888889999999999999999999999999999999


Q ss_pred             ECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHhh
Q 030364           91 DITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIGDC  170 (178)
Q Consensus        91 d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  170 (178)
                      |++++++++.+..|+..+......+.|+++++||+|+........++...+++..+++++++||+++.|+++++++|.+.
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~  160 (161)
T cd01861          81 DITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIASA  160 (161)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHh
Confidence            99999999999999998877655579999999999997666777777888888888999999999999999999999875


Q ss_pred             c
Q 030364          171 T  171 (178)
Q Consensus       171 i  171 (178)
                      +
T Consensus       161 l  161 (161)
T cd01861         161 L  161 (161)
T ss_pred             C
Confidence            3

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>cd01860 Rab5_related Rab5-related subfamily

Probab=100.00  E-value=6.6e-35  Score=194.26  Aligned_cols=162  Identities=68%  Similarity=1.024  Sum_probs=148.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEE
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVV   89 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v   89 (178)
                      ++||+++|++|+|||||+++++++.+...+.++.+..+....+.+++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus         1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   80 (163)
T cd01860           1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV   80 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence            47999999999999999999999998877888888888788888999899999999999999998899999999999999


Q ss_pred             EECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHh
Q 030364           90 YDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIGD  169 (178)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  169 (178)
                      +|++++++++....|+..+.....++.|+++++||+|+.........+...++...+++++++||++|.|++++|++|++
T Consensus        81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~  160 (163)
T cd01860          81 YDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYADENGLLFFETSAKTGENVNELFTEIAK  160 (163)
T ss_pred             EECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            99999999999999999998876678999999999998866667777888888888999999999999999999999998


Q ss_pred             hc
Q 030364          170 CT  171 (178)
Q Consensus       170 ~i  171 (178)
                      .+
T Consensus       161 ~l  162 (163)
T cd01860         161 KL  162 (163)
T ss_pred             Hh
Confidence            75

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>cd01871 Rac1_like Rac1-like subfamily

Probab=100.00  E-value=3.4e-35  Score=197.44  Aligned_cols=159  Identities=28%  Similarity=0.512  Sum_probs=138.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEE
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVV   89 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v   89 (178)
                      .+||+++|.+|+|||||+.++..+.+...+.++....+ ...+..++..+.+.+||++|++.+...+..+++.+|++|+|
T Consensus         1 ~~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv   79 (174)
T cd01871           1 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLIC   79 (174)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeee-EEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEE
Confidence            36999999999999999999999999888888876443 44556788889999999999999999999999999999999


Q ss_pred             EECCCHhHHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCccc------------cccCHHHHHHHHHHcCC-eEEEEeCC
Q 030364           90 YDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEEK------------RKVKNEEGELYAQENGL-SFLETSAK  155 (178)
Q Consensus        90 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~  155 (178)
                      ||++++++|+++. .|+..+... .++.|+++|+||+|+.+.            ..+..+++..+++.++. ++++|||+
T Consensus        80 ~d~~~~~sf~~~~~~~~~~~~~~-~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~  158 (174)
T cd01871          80 FSLVSPASFENVRAKWYPEVRHH-CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL  158 (174)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHh-CCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeccc
Confidence            9999999999986 577777655 468999999999998542            24677888999998884 99999999


Q ss_pred             CCCCHHHHHHHHHhh
Q 030364          156 SAHNVNELFYEIGDC  170 (178)
Q Consensus       156 ~~~~i~~~~~~l~~~  170 (178)
                      +|.|++++|+.+++.
T Consensus       159 ~~~~i~~~f~~l~~~  173 (174)
T cd01871         159 TQKGLKTVFDEAIRA  173 (174)
T ss_pred             ccCCHHHHHHHHHHh
Confidence            999999999999864

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>cd04140 ARHI_like ARHI subfamily

Probab=100.00  E-value=3.2e-35  Score=196.21  Aligned_cols=159  Identities=36%  Similarity=0.504  Sum_probs=139.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEEE
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY   90 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~   90 (178)
                      +||+++|.+|+|||||++++.++.+...+.++.+..+ ......+...+.+.+||++|++.+..++..++..+|++++||
T Consensus         2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   80 (165)
T cd04140           2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY   80 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence            7899999999999999999999998777777766444 444566777899999999999999988888999999999999


Q ss_pred             ECCCHhHHHHHHHHHHHHHHhC---CCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Q 030364           91 DITSMDSFERAKKWVQELQRQG---NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI  167 (178)
Q Consensus        91 d~~~~~s~~~~~~~~~~~~~~~---~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  167 (178)
                      |++++++++.+..|+..+....   .++.|+++|+||+|+...+++...++..++..++++++++||++|.|++++|++|
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~l  160 (165)
T cd04140          81 SVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQEL  160 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHH
Confidence            9999999999999988776643   3679999999999997767777777888888889999999999999999999999


Q ss_pred             Hhh
Q 030364          168 GDC  170 (178)
Q Consensus       168 ~~~  170 (178)
                      ++.
T Consensus       161 ~~~  163 (165)
T cd04140         161 LNL  163 (165)
T ss_pred             Hhc
Confidence            853

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>cd04124 RabL2 RabL2 subfamily

Probab=100.00  E-value=6.1e-35  Score=194.13  Aligned_cols=161  Identities=32%  Similarity=0.548  Sum_probs=140.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEEE
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY   90 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~   90 (178)
                      +||+++|.+|+|||||++++..+.+.+.+.++.+.+........++..+.+.+||++|++.+...+..+++.+|++++||
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd04124           1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence            58999999999999999999999988877777777776667778888899999999999999999999999999999999


Q ss_pred             ECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHhh
Q 030364           91 DITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIGDC  170 (178)
Q Consensus        91 d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  170 (178)
                      |++++.+++.+..|+..+... .++.|+++|+||+|+...   ...+...+++..+++++++||++|.|++++|+.+++.
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~-~~~~p~ivv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~  156 (161)
T cd04124          81 DVTRKITYKNLSKWYEELREY-RPEIPCIVVANKIDLDPS---VTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKL  156 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHh-CCCCcEEEEEECccCchh---HHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence            999999999999999988765 457899999999998532   1234556677778999999999999999999999988


Q ss_pred             ccccc
Q 030364          171 TECFS  175 (178)
Q Consensus       171 i~~~~  175 (178)
                      +.+++
T Consensus       157 ~~~~~  161 (161)
T cd04124         157 AVSYK  161 (161)
T ss_pred             HHhcC
Confidence            76653

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=100.00  E-value=5.2e-35  Score=194.89  Aligned_cols=162  Identities=33%  Similarity=0.521  Sum_probs=141.9

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEE
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVV   88 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~   88 (178)
                      +.+||+++|.+|+|||||++++.++.+...+.++.+..+ .....+++..+.+.+||+||++++...+..+++.+|++++
T Consensus         1 ~~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~il   79 (164)
T cd04145           1 PTYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY-TKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLL   79 (164)
T ss_pred             CceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceE-EEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEE
Confidence            358999999999999999999999888777777766444 4445678888899999999999999999999999999999


Q ss_pred             EEECCCHhHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Q 030364           89 VYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI  167 (178)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  167 (178)
                      |||++++.+++.+..|+..+.... ..+.|+++++||+|+.....+..++...+++..+++++++||++|.|++++|++|
T Consensus        80 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l  159 (164)
T cd04145          80 VFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDL  159 (164)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHH
Confidence            999999999999999998887643 4678999999999998777677777888888888999999999999999999999


Q ss_pred             Hhhc
Q 030364          168 GDCT  171 (178)
Q Consensus       168 ~~~i  171 (178)
                      ++.+
T Consensus       160 ~~~~  163 (164)
T cd04145         160 VRVI  163 (164)
T ss_pred             HHhh
Confidence            8765

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=100.00  E-value=3.4e-35  Score=195.90  Aligned_cols=161  Identities=39%  Similarity=0.606  Sum_probs=141.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEEE
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY   90 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~   90 (178)
                      +||+++|++|||||||++++.++.+...+.++.+.. .......++..+.+.+||+||++++...+..+++.+|++++||
T Consensus         1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~   79 (164)
T smart00173        1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDS-YRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVY   79 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhh-EEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEE
Confidence            489999999999999999999998877777766533 3455667788899999999999999999999999999999999


Q ss_pred             ECCCHhHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHh
Q 030364           91 DITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIGD  169 (178)
Q Consensus        91 d~~~~~s~~~~~~~~~~~~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  169 (178)
                      |++++++++.+..|+..+.... ..+.|+++|+||+|+...+.+..+....+++..+++++++||++|.|++++|++|++
T Consensus        80 d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~  159 (164)
T smart00173       80 SITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVR  159 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHHHH
Confidence            9999999999999988876643 357899999999999876667777788888888999999999999999999999998


Q ss_pred             hcc
Q 030364          170 CTE  172 (178)
Q Consensus       170 ~i~  172 (178)
                      .+.
T Consensus       160 ~~~  162 (164)
T smart00173      160 EIR  162 (164)
T ss_pred             HHh
Confidence            765

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd04126 Rab20 Rab20 subfamily

Probab=100.00  E-value=3.6e-35  Score=202.92  Aligned_cols=158  Identities=39%  Similarity=0.618  Sum_probs=137.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEEE
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY   90 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~   90 (178)
                      +||+++|.+|+|||||++++..+.+.. +.++.+.++.....    ..+.+.+||++|++.|..++..+++.+|++|+||
T Consensus         1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~----~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~   75 (220)
T cd04126           1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQW----GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTY   75 (220)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEe----eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEE
Confidence            589999999999999999999998865 56666655443322    4578999999999999999999999999999999


Q ss_pred             ECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcc-------------------ccccCHHHHHHHHHHcC-----
Q 030364           91 DITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEE-------------------KRKVKNEEGELYAQENG-----  146 (178)
Q Consensus        91 d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~-------------------~~~~~~~~~~~~~~~~~-----  146 (178)
                      |++++++|+.+..|+..+.....++.|+++|+||+|+.+                   .+++..+++..+++..+     
T Consensus        76 Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~  155 (220)
T cd04126          76 DVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKML  155 (220)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccccc
Confidence            999999999999888888776567899999999999865                   57788889999998876     


Q ss_pred             ---------CeEEEEeCCCCCCHHHHHHHHHhhccc
Q 030364          147 ---------LSFLETSAKSAHNVNELFYEIGDCTEC  173 (178)
Q Consensus       147 ---------~~~~~~Sa~~~~~i~~~~~~l~~~i~~  173 (178)
                               ++|++|||++|.||+++|..+++.+..
T Consensus       156 ~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~  191 (220)
T cd04126         156 DEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLP  191 (220)
T ss_pred             cccccccccceEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence                     689999999999999999999987653

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=100.00  E-value=9.3e-35  Score=194.88  Aligned_cols=163  Identities=35%  Similarity=0.638  Sum_probs=147.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhh-ccchhhhcCCcEEEE
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYH-SLAPMYYRGAAAAVV   88 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~-~~~~~~~~~~d~~i~   88 (178)
                      .+||+++|++|+|||||++++..+.+...+.++.+.+.....+.+++..+.+.+||++|++.+. ..+..+++.+|++++
T Consensus         2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~   81 (170)
T cd04115           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF   81 (170)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence            5799999999999999999999999888788888888888888889988999999999998886 567888999999999


Q ss_pred             EEECCCHhHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCC---CCCHHHHH
Q 030364           89 VYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKS---AHNVNELF  164 (178)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~~i~~~~  164 (178)
                      |||+++++++..+..|+..+.... ..+.|+++|+||+|+...+.+..++...+++..+++|+++||++   +.+++++|
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~~f  161 (170)
T cd04115          82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIF  161 (170)
T ss_pred             EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHH
Confidence            999999999999999998887754 46799999999999988888888888889998999999999999   89999999


Q ss_pred             HHHHhhcc
Q 030364          165 YEIGDCTE  172 (178)
Q Consensus       165 ~~l~~~i~  172 (178)
                      ..|++.++
T Consensus       162 ~~l~~~~~  169 (170)
T cd04115         162 MTLAHKLK  169 (170)
T ss_pred             HHHHHHhh
Confidence            99998764

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=100.00  E-value=5.4e-35  Score=202.12  Aligned_cols=160  Identities=27%  Similarity=0.507  Sum_probs=139.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEE
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVV   89 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v   89 (178)
                      .+||+|+|.+|+|||||++++..+.+...+.|+.+..+. ..+.+++..+.+.+||++|++.|..+++.+++.+|++++|
T Consensus         1 ~~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illv   79 (222)
T cd04173           1 RCKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLIC   79 (222)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEE
Confidence            379999999999999999999999999889999886664 5667888999999999999999999999999999999999


Q ss_pred             EECCCHhHHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCccc------------cccCHHHHHHHHHHcCC-eEEEEeCC
Q 030364           90 YDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEEK------------RKVKNEEGELYAQENGL-SFLETSAK  155 (178)
Q Consensus        90 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~  155 (178)
                      ||++++++|+.+. .|...+.. ..++.|+++|+||+|+...            ..+..+++..+++..++ +|++|||+
T Consensus        80 fdis~~~Sf~~i~~~w~~~~~~-~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk  158 (222)
T cd04173          80 FDISRPETLDSVLKKWQGETQE-FCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSR  158 (222)
T ss_pred             EECCCHHHHHHHHHHHHHHHHh-hCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCC
Confidence            9999999999985 56555544 3578999999999998542            23677889999999995 99999999


Q ss_pred             CCCC-HHHHHHHHHhhc
Q 030364          156 SAHN-VNELFYEIGDCT  171 (178)
Q Consensus       156 ~~~~-i~~~~~~l~~~i  171 (178)
                      ++.+ |+++|...+...
T Consensus       159 ~~~~~V~~~F~~~~~~~  175 (222)
T cd04173         159 SSERSVRDVFHVATVAS  175 (222)
T ss_pred             cCCcCHHHHHHHHHHHH
Confidence            9985 999999988754

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=100.00  E-value=6.5e-35  Score=193.94  Aligned_cols=160  Identities=33%  Similarity=0.557  Sum_probs=139.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEE
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVV   89 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v   89 (178)
                      .+||+++|++|+|||||++++.++.+...+.++.+..+ .....+++..+.+.+||++|++.+..++..+++.+|++++|
T Consensus         1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v   79 (162)
T cd04138           1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV   79 (162)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE-EEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEE
Confidence            36899999999999999999999988777777776544 45567788888899999999999999999999999999999


Q ss_pred             EECCCHhHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Q 030364           90 YDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIG  168 (178)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  168 (178)
                      ||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+ ......+...+++..+++++++||++|.|++++|++|+
T Consensus        80 ~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  158 (162)
T cd04138          80 FAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLV  158 (162)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-ceecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHHH
Confidence            99999999999999988887654 36889999999999876 44556677778888899999999999999999999998


Q ss_pred             hhc
Q 030364          169 DCT  171 (178)
Q Consensus       169 ~~i  171 (178)
                      +.+
T Consensus       159 ~~~  161 (162)
T cd04138         159 REI  161 (162)
T ss_pred             HHh
Confidence            765

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>cd04134 Rho3 Rho3 subfamily

Probab=100.00  E-value=5.9e-35  Score=198.87  Aligned_cols=163  Identities=34%  Similarity=0.547  Sum_probs=139.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEEE
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY   90 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~   90 (178)
                      .||+++|++|+|||||++++..+.+...+.++.+..+. ..+..++..+.+.+||++|++.+..++..+++.+|++|+||
T Consensus         1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~-~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~   79 (189)
T cd04134           1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYV-HDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCF   79 (189)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeE-EEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEE
Confidence            48999999999999999999999998878888776653 44566788899999999999999999999999999999999


Q ss_pred             ECCCHhHHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCcccc------------ccCHHHHHHHHHHcC-CeEEEEeCCC
Q 030364           91 DITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEEKR------------KVKNEEGELYAQENG-LSFLETSAKS  156 (178)
Q Consensus        91 d~~~~~s~~~~~-~~~~~~~~~~~~~~~~ivv~nK~D~~~~~------------~~~~~~~~~~~~~~~-~~~~~~Sa~~  156 (178)
                      |++++++|+.+. .|+..+... .++.|+++|+||+|+....            .+..++...+++..+ ++|++|||++
T Consensus        80 dv~~~~sf~~~~~~~~~~i~~~-~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~  158 (189)
T cd04134          80 SVDSPDSLENVESKWLGEIREH-CPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKL  158 (189)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHh-CCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCc
Confidence            999999999986 588887765 4689999999999986543            245566777777776 7999999999


Q ss_pred             CCCHHHHHHHHHhhccccc
Q 030364          157 AHNVNELFYEIGDCTECFS  175 (178)
Q Consensus       157 ~~~i~~~~~~l~~~i~~~~  175 (178)
                      |.|++++|.+|++.+...+
T Consensus       159 ~~~v~e~f~~l~~~~~~~~  177 (189)
T cd04134         159 NRGVNEAFTEAARVALNVR  177 (189)
T ss_pred             CCCHHHHHHHHHHHHhccc
Confidence            9999999999998876543

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=3.8e-36  Score=190.64  Aligned_cols=165  Identities=39%  Similarity=0.719  Sum_probs=151.9

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEe-CCeEEEEEEEeCCCchhhhccchhhhcCCcEE
Q 030364            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSL-NEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA   86 (178)
Q Consensus         8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~   86 (178)
                      ..+++++|+|.+-+|||+|++.++.+++.+...||.+.+.....+.+ ++..+++++|||.|+++|++....|+++.-++
T Consensus         6 ~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgv   85 (213)
T KOG0091|consen    6 HYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGV   85 (213)
T ss_pred             EEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccce
Confidence            35789999999999999999999999999999999999988887766 78899999999999999999999999999999


Q ss_pred             EEEEECCCHhHHHHHHHHHHHHHHhCC-CCce-EEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Q 030364           87 VVVYDITSMDSFERAKKWVQELQRQGN-PNLI-MFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELF  164 (178)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~-~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  164 (178)
                      ++|||+++++||+.+..|..+...+.. |+.+ +.+|++|+|+...+++..++++.++..++..|++||+++|.|+++.|
T Consensus        86 llvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FVETSak~g~NVeEAF  165 (213)
T KOG0091|consen   86 LLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFVETSAKNGCNVEEAF  165 (213)
T ss_pred             EEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCceEEEecccCCCcHHHHH
Confidence            999999999999999999998776544 6555 46779999999999999999999999999999999999999999999


Q ss_pred             HHHHhhcc
Q 030364          165 YEIGDCTE  172 (178)
Q Consensus       165 ~~l~~~i~  172 (178)
                      .-|.+.+-
T Consensus       166 ~mlaqeIf  173 (213)
T KOG0091|consen  166 DMLAQEIF  173 (213)
T ss_pred             HHHHHHHH
Confidence            98888654

>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=5.9e-36  Score=187.26  Aligned_cols=166  Identities=41%  Similarity=0.713  Sum_probs=156.8

Q ss_pred             CCCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcE
Q 030364            6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAA   85 (178)
Q Consensus         6 ~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~   85 (178)
                      +-+..+||+++|+.|+|||+|+++++.+-|++....+.+.+...+.+.+++..+++++||+.|+++|++....|++++++
T Consensus         3 dykflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsaha   82 (213)
T KOG0095|consen    3 DYKFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHA   82 (213)
T ss_pred             ccceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcce
Confidence            34557899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Q 030364           86 AVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFY  165 (178)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  165 (178)
                      +|++||++...+|+.+..|+.++..+....+--++|+||.|+.+.+++....+++|++....-|.++||+..++++.+|.
T Consensus        83 lilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~drrevp~qigeefs~~qdmyfletsakea~nve~lf~  162 (213)
T KOG0095|consen   83 LILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADRREVPQQIGEEFSEAQDMYFLETSAKEADNVEKLFL  162 (213)
T ss_pred             EEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhhhhhhHHHHHHHHHhhhhhhhhhcccchhhHHHHHH
Confidence            99999999999999999999999999887888899999999999999999999999999889999999999999999999


Q ss_pred             HHHhhc
Q 030364          166 EIGDCT  171 (178)
Q Consensus       166 ~l~~~i  171 (178)
                      .+.-++
T Consensus       163 ~~a~rl  168 (213)
T KOG0095|consen  163 DLACRL  168 (213)
T ss_pred             HHHHHH
Confidence            876543

>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=2.7e-36  Score=190.47  Aligned_cols=167  Identities=43%  Similarity=0.724  Sum_probs=158.0

Q ss_pred             CCCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcE
Q 030364            6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAA   85 (178)
Q Consensus         6 ~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~   85 (178)
                      .+...+|++++|..-+|||||+-++..++|...+.++....+..+.+.+.+....+.||||.|+++|..+-+.|+++.++
T Consensus         9 g~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnG   88 (218)
T KOG0088|consen    9 GKSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNG   88 (218)
T ss_pred             CCceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCc
Confidence            34568999999999999999999999999999899998888888888999999999999999999999999999999999


Q ss_pred             EEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Q 030364           86 AVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFY  165 (178)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  165 (178)
                      .++|||++|++||+.++.|..++........-+++|+||.|+++++.+...++..+++..|+.|+++||+.+.||.++|+
T Consensus        89 alLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~elFe  168 (218)
T KOG0088|consen   89 ALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQVTRQEAEAYAESVGALYMETSAKDNVGISELFE  168 (218)
T ss_pred             eEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhchhheecccccccCHHHHHH
Confidence            99999999999999999999999998888888999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhcc
Q 030364          166 EIGDCTE  172 (178)
Q Consensus       166 ~l~~~i~  172 (178)
                      .|.+.+-
T Consensus       169 ~Lt~~Mi  175 (218)
T KOG0088|consen  169 SLTAKMI  175 (218)
T ss_pred             HHHHHHH
Confidence            9987654

>cd04142 RRP22 RRP22 subfamily

Probab=100.00  E-value=1.6e-34  Score=197.53  Aligned_cols=164  Identities=26%  Similarity=0.296  Sum_probs=136.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhc--------cchhhhcC
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHS--------LAPMYYRG   82 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~--------~~~~~~~~   82 (178)
                      +||+|+|.+|||||||++++.++.+...+.|+.+.+.....+.+++..+.+.+||+||...+..        .....++.
T Consensus         1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~   80 (198)
T cd04142           1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN   80 (198)
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence            5899999999999999999999999887888887666666677888889999999999654321        13345789


Q ss_pred             CcEEEEEEECCCHhHHHHHHHHHHHHHHhC---CCCceEEEEEeCCCCccccccCHHHHHHHHH-HcCCeEEEEeCCCCC
Q 030364           83 AAAAVVVYDITSMDSFERAKKWVQELQRQG---NPNLIMFLVANKVDLEEKRKVKNEEGELYAQ-ENGLSFLETSAKSAH  158 (178)
Q Consensus        83 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~  158 (178)
                      +|++++|||++++++++.+..|+..+....   .++.|+++|+||+|+...+.+..++...++. .++++|++|||++|.
T Consensus        81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~  160 (198)
T cd04142          81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNW  160 (198)
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCCC
Confidence            999999999999999999999998887753   4689999999999997766666666666654 568999999999999


Q ss_pred             CHHHHHHHHHhhcccc
Q 030364          159 NVNELFYEIGDCTECF  174 (178)
Q Consensus       159 ~i~~~~~~l~~~i~~~  174 (178)
                      |++++|+.+++.+...
T Consensus       161 ~v~~lf~~i~~~~~~~  176 (198)
T cd04142         161 HILLLFKELLISATTR  176 (198)
T ss_pred             CHHHHHHHHHHHhhcc
Confidence            9999999999876543

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=100.00  E-value=4e-34  Score=190.71  Aligned_cols=160  Identities=29%  Similarity=0.509  Sum_probs=140.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC--cCCCCccCceeeeEEEEEEEeC-CeEEEEEEEeCCCchhhhccchhhhcCCcEEE
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVKG--QFFDFQESTIGAAFFTQVLSLN-EVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i   87 (178)
                      +||+++|.+|||||||++++..+  .+...+.++.+.++.......+ +..+.+.+||+||++.+..++..+++.+|+++
T Consensus         1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii   80 (164)
T cd04101           1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence            58999999999999999999865  6777788888888766666664 56799999999999999999999999999999


Q ss_pred             EEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Q 030364           88 VVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI  167 (178)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  167 (178)
                      +|||++++++++.+..|+..+.... ++.|+++|+||+|+.+..++.......+....+++++++||++|.|++++|+.|
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  159 (164)
T cd04101          81 LVYDVSNKASFENCSRWVNKVRTAS-KHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFESL  159 (164)
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHHHH
Confidence            9999999999999999998888764 678999999999997777777666677777788999999999999999999999


Q ss_pred             Hhhc
Q 030364          168 GDCT  171 (178)
Q Consensus       168 ~~~i  171 (178)
                      ++.+
T Consensus       160 ~~~~  163 (164)
T cd04101         160 ARAF  163 (164)
T ss_pred             HHHh
Confidence            8864

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>cd04123 Rab21 Rab21 subfamily

Probab=100.00  E-value=5.6e-34  Score=189.43  Aligned_cols=161  Identities=47%  Similarity=0.801  Sum_probs=144.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEEE
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY   90 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~   90 (178)
                      +||+++|++|+|||||++++.++.+...+.++.+.+.....+...+..+.+.+||+||++.+...+..++..+|++++||
T Consensus         1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (162)
T cd04123           1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence            58999999999999999999999887767777777776777777788889999999999999999999999999999999


Q ss_pred             ECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHhh
Q 030364           91 DITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIGDC  170 (178)
Q Consensus        91 d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  170 (178)
                      |++++++++.+..|+..+......+.|+++++||+|+.....+..++...+.+..+++++++|++++.|+++++++|.+.
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~~~  160 (162)
T cd04123          81 DITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKR  160 (162)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence            99999999999999999887766689999999999998766777777778888889999999999999999999999886


Q ss_pred             c
Q 030364          171 T  171 (178)
Q Consensus       171 i  171 (178)
                      +
T Consensus       161 ~  161 (162)
T cd04123         161 M  161 (162)
T ss_pred             h
Confidence            4

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=100.00  E-value=2.3e-34  Score=196.54  Aligned_cols=155  Identities=32%  Similarity=0.560  Sum_probs=138.8

Q ss_pred             EcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEEEECCCH
Q 030364           16 LGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSM   95 (178)
Q Consensus        16 ~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~   95 (178)
                      +|.+|||||||+++++.+.+...+.++.+.++....+.+++..+.+.+||++|++.|..++..+++++|++|+|||++++
T Consensus         1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~   80 (200)
T smart00176        1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR   80 (200)
T ss_pred             CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence            69999999999999999998888889998888888888888899999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHhhccc
Q 030364           96 DSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIGDCTEC  173 (178)
Q Consensus        96 ~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~~  173 (178)
                      .+++.+..|+..+.... ++.|+++|+||+|+.. +.+..+ ...+++..+++|++|||++|.||+++|.+|++.+.+
T Consensus        81 ~S~~~i~~w~~~i~~~~-~~~piilvgNK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~  155 (200)
T smart00176       81 VTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDVKD-RKVKAK-SITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIG  155 (200)
T ss_pred             HHHHHHHHHHHHHHHhC-CCCCEEEEEECccccc-ccCCHH-HHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence            99999999999998763 6899999999999854 334433 346778889999999999999999999999987754

Ran is involved in the active transport of proteins through nuclear pores.

>cd04132 Rho4_like Rho4-like subfamily

Probab=100.00  E-value=3.1e-34  Score=195.11  Aligned_cols=162  Identities=31%  Similarity=0.519  Sum_probs=139.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeC-CeEEEEEEEeCCCchhhhccchhhhcCCcEEEEE
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLN-EVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVV   89 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v   89 (178)
                      +||+++|++|+|||||++++.++.+...+.++.+..+... +... +..+.+.+||+||++.+...+..+++.+|++++|
T Consensus         1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~-i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v   79 (187)
T cd04132           1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTN-IQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC   79 (187)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEE-EEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence            5899999999999999999999999888888877666443 4444 7788999999999999999999999999999999


Q ss_pred             EECCCHhHHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCccc----cccCHHHHHHHHHHcCC-eEEEEeCCCCCCHHHH
Q 030364           90 YDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEEK----RKVKNEEGELYAQENGL-SFLETSAKSAHNVNEL  163 (178)
Q Consensus        90 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~ivv~nK~D~~~~----~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~  163 (178)
                      ||++++++|+++. .|+..+... .++.|+++|+||+|+...    +.+...+...++...++ +++++||++|.|++++
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~  158 (187)
T cd04132          80 YAVDNPTSLDNVEDKWFPEVNHF-CPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEEV  158 (187)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHh-CCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHH
Confidence            9999999999986 477666554 468999999999998653    24567788888988888 9999999999999999


Q ss_pred             HHHHHhhcccc
Q 030364          164 FYEIGDCTECF  174 (178)
Q Consensus       164 ~~~l~~~i~~~  174 (178)
                      |..+++.+...
T Consensus       159 f~~l~~~~~~~  169 (187)
T cd04132         159 FDTAIEEALKK  169 (187)
T ss_pred             HHHHHHHHHhh
Confidence            99999887654

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04114 Rab30 Rab30 subfamily

Probab=100.00  E-value=1.4e-33  Score=188.95  Aligned_cols=165  Identities=40%  Similarity=0.703  Sum_probs=146.6

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEE
Q 030364            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA   86 (178)
Q Consensus         7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~   86 (178)
                      ....++|+++|++|+|||||++++..+.+.+.+.++.+.+.....+.+++..+.+.+||+||+..+...+..++..+|++
T Consensus         4 ~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~   83 (169)
T cd04114           4 YDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANAL   83 (169)
T ss_pred             CCceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEE
Confidence            34579999999999999999999998888777778887777777788888888999999999999999889999999999


Q ss_pred             EEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Q 030364           87 VVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYE  166 (178)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  166 (178)
                      ++|||++++++++.+..|+..+......+.|+++++||+|+...+++.......+.+....+++++||++|.|++++|++
T Consensus        84 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~  163 (169)
T cd04114          84 ILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLD  163 (169)
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHH
Confidence            99999999999999999998888776668999999999999877777777677777777799999999999999999999


Q ss_pred             HHhhc
Q 030364          167 IGDCT  171 (178)
Q Consensus       167 l~~~i  171 (178)
                      |.+.+
T Consensus       164 i~~~~  168 (169)
T cd04114         164 LACRL  168 (169)
T ss_pred             HHHHh
Confidence            98754

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd01873 RhoBTB RhoBTB subfamily

Probab=100.00  E-value=5.1e-34  Score=194.45  Aligned_cols=158  Identities=25%  Similarity=0.410  Sum_probs=129.5

Q ss_pred             eeEEEEEcCCCCCHHHHHH-HHHhCc-----CCCCccCceee-eEEEEE--------EEeCCeEEEEEEEeCCCchhhhc
Q 030364           10 QVKLVLLGDMGTGKTSLVL-RFVKGQ-----FFDFQESTIGA-AFFTQV--------LSLNEVTIKFDIWDTAGQERYHS   74 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~-~l~~~~-----~~~~~~~~~~~-~~~~~~--------~~~~~~~~~~~i~d~~g~~~~~~   74 (178)
                      .+||+++|.+|+|||||+. ++.++.     +...+.||.+. +.+...        ..+++..+.+.+|||+|++.  .
T Consensus         2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~   79 (195)
T cd01873           2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K   79 (195)
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence            4799999999999999995 555443     44556777752 222211        25688899999999999875  3


Q ss_pred             cchhhhcCCcEEEEEEECCCHhHHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCcc-------------------ccccC
Q 030364           75 LAPMYYRGAAAAVVVYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE-------------------KRKVK  134 (178)
Q Consensus        75 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~ivv~nK~D~~~-------------------~~~~~  134 (178)
                      ....+++++|++++|||+++++||+.+. .|+..+.... ++.|+++|+||+|+..                   .+.+.
T Consensus        80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~-~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~  158 (195)
T cd01873          80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC-PRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILP  158 (195)
T ss_pred             hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhccccccchhhhcccccccccccCCccC
Confidence            4566889999999999999999999997 5888887653 5789999999999864                   36788


Q ss_pred             HHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHhh
Q 030364          135 NEEGELYAQENGLSFLETSAKSAHNVNELFYEIGDC  170 (178)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  170 (178)
                      .+++..+++.++++|++|||++|.|++++|+.+++.
T Consensus       159 ~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~  194 (195)
T cd01873         159 PETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA  194 (195)
T ss_pred             HHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence            899999999999999999999999999999999874

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>cd04103 Centaurin_gamma Centaurin gamma

Probab=100.00  E-value=5.8e-34  Score=188.54  Aligned_cols=154  Identities=20%  Similarity=0.375  Sum_probs=130.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEEE
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY   90 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~   90 (178)
                      +||+++|++|+|||||++++..+.+.+.+.++ ...+ ...+.+++..+.+.+||++|++.     ..+++.+|++++||
T Consensus         1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~-~~~~-~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~   73 (158)
T cd04103           1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPE-GGRF-KKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVF   73 (158)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCC-ccce-EEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEE
Confidence            58999999999999999999988887665544 3333 45678888889999999999864     34678899999999


Q ss_pred             ECCCHhHHHHHHHHHHHHHHhCC-CCceEEEEEeCCCCc--cccccCHHHHHHHHHHc-CCeEEEEeCCCCCCHHHHHHH
Q 030364           91 DITSMDSFERAKKWVQELQRQGN-PNLIMFLVANKVDLE--EKRKVKNEEGELYAQEN-GLSFLETSAKSAHNVNELFYE  166 (178)
Q Consensus        91 d~~~~~s~~~~~~~~~~~~~~~~-~~~~~ivv~nK~D~~--~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~~~~  166 (178)
                      |.++++||+++..|+..+..... ++.|+++|+||.|+.  ..+++..+++..+++.. +++|++|||++|.||+++|..
T Consensus        74 d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~  153 (158)
T cd04103          74 SLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQE  153 (158)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHH
Confidence            99999999999999999887653 678999999999985  35677778888888776 589999999999999999999


Q ss_pred             HHhhc
Q 030364          167 IGDCT  171 (178)
Q Consensus       167 l~~~i  171 (178)
                      +++.+
T Consensus       154 ~~~~~  158 (158)
T cd04103         154 AAQKI  158 (158)
T ss_pred             HHhhC
Confidence            98753

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>cd01863 Rab18 Rab18 subfamily

Probab=100.00  E-value=1.7e-33  Score=187.13  Aligned_cols=160  Identities=41%  Similarity=0.731  Sum_probs=142.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEEE
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY   90 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~   90 (178)
                      +||+++|++|+|||||++++.++.+.....++.+.++....+.+++..+.+.+||+||++.+......+++.+|++++||
T Consensus         1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd01863           1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence            58999999999999999999998887778888888877777778888899999999999999999999999999999999


Q ss_pred             ECCCHhHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHh
Q 030364           91 DITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIGD  169 (178)
Q Consensus        91 d~~~~~s~~~~~~~~~~~~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  169 (178)
                      |++++++++.+..|+..+.... .++.|+++++||+|+.. .....++...+++..+++++++||++|.|++++++++.+
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~~  159 (161)
T cd01863          81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKEN-REVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELVE  159 (161)
T ss_pred             ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccc-cccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHH
Confidence            9999999999999998887764 46899999999999873 445567788888889999999999999999999999987


Q ss_pred             hc
Q 030364          170 CT  171 (178)
Q Consensus       170 ~i  171 (178)
                      .+
T Consensus       160 ~~  161 (161)
T cd01863         160 KI  161 (161)
T ss_pred             hC
Confidence            63

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>cd04118 Rab24 Rab24 subfamily

Probab=100.00  E-value=1.4e-33  Score=192.82  Aligned_cols=161  Identities=43%  Similarity=0.694  Sum_probs=141.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCcCCC-CccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEE
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVKGQFFD-FQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVV   89 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v   89 (178)
                      +||+++|.+|+|||||++++.++.+.. .+.++.+..+....+..++..+.+.+||++|.+.+...+..++..+|++++|
T Consensus         1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv   80 (193)
T cd04118           1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC   80 (193)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence            589999999999999999999998864 5778888878778888899999999999999999999999999999999999


Q ss_pred             EECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccc----cccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Q 030364           90 YDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEK----RKVKNEEGELYAQENGLSFLETSAKSAHNVNELFY  165 (178)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  165 (178)
                      ||++++++++.+..|+..+... .++.|+++|+||+|+...    ..+...+...++...+++++++||++|.|++++|+
T Consensus        81 ~d~~~~~s~~~~~~~~~~i~~~-~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~  159 (193)
T cd04118          81 YDLTDSSSFERAKFWVKELQNL-EEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQ  159 (193)
T ss_pred             EECCCHHHHHHHHHHHHHHHhc-CCCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence            9999999999999999888765 357899999999998532    34445567778888889999999999999999999


Q ss_pred             HHHhhcc
Q 030364          166 EIGDCTE  172 (178)
Q Consensus       166 ~l~~~i~  172 (178)
                      +|.+.+.
T Consensus       160 ~i~~~~~  166 (193)
T cd04118         160 KVAEDFV  166 (193)
T ss_pred             HHHHHHH
Confidence            9998764

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>cd04177 RSR1 RSR1 subgroup

Probab=100.00  E-value=1.1e-33  Score=189.38  Aligned_cols=162  Identities=31%  Similarity=0.536  Sum_probs=142.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEE
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVV   89 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v   89 (178)
                      .+||+++|.+|+|||||++++.++.+...+.++.+..+ ...+..++..+.+.+||+||++.|..++..+++.++++++|
T Consensus         1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv   79 (168)
T cd04177           1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSY-RKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLV   79 (168)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEE
Confidence            47899999999999999999999998777777776443 56667788889999999999999999999999999999999


Q ss_pred             EECCCHhHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCccccccCHHHHHHHHHHcC-CeEEEEeCCCCCCHHHHHHHH
Q 030364           90 YDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYEI  167 (178)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~~~~l  167 (178)
                      ||++++++++.+..|...+.... ..+.|+++++||.|+...+.+..++...+++.++ ++++++||++|.|++++|+++
T Consensus        80 ~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i  159 (168)
T cd04177          80 YSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDL  159 (168)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHHH
Confidence            99999999999999988887643 4689999999999998777777777778888887 899999999999999999999


Q ss_pred             Hhhcc
Q 030364          168 GDCTE  172 (178)
Q Consensus       168 ~~~i~  172 (178)
                      +.++-
T Consensus       160 ~~~~~  164 (168)
T cd04177         160 VRQII  164 (168)
T ss_pred             HHHHh
Confidence            97653

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>cd04143 Rhes_like Rhes_like subfamily

Probab=100.00  E-value=7.9e-34  Score=199.68  Aligned_cols=161  Identities=25%  Similarity=0.426  Sum_probs=139.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEEE
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY   90 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~   90 (178)
                      +||+++|.+|+|||||++++..+.+...+.++.+ +.....+.+++..+.+.+||++|++.|..++..++..+|++|+||
T Consensus         1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVf   79 (247)
T cd04143           1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVF   79 (247)
T ss_pred             CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence            4899999999999999999999998877777776 455567788888999999999999999888888899999999999


Q ss_pred             ECCCHhHHHHHHHHHHHHHHh---------CCCCceEEEEEeCCCCccccccCHHHHHHHHHH-cCCeEEEEeCCCCCCH
Q 030364           91 DITSMDSFERAKKWVQELQRQ---------GNPNLIMFLVANKVDLEEKRKVKNEEGELYAQE-NGLSFLETSAKSAHNV  160 (178)
Q Consensus        91 d~~~~~s~~~~~~~~~~~~~~---------~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i  160 (178)
                      |++++++|+.+..|+..+...         ...+.|+++|+||+|+...+++..++...++.. .++.++++||++|.|+
T Consensus        80 dv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~gI  159 (247)
T cd04143          80 SLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNL  159 (247)
T ss_pred             eCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCCCH
Confidence            999999999999998888653         235799999999999976666777777766653 4689999999999999


Q ss_pred             HHHHHHHHhhcc
Q 030364          161 NELFYEIGDCTE  172 (178)
Q Consensus       161 ~~~~~~l~~~i~  172 (178)
                      +++|++|.+...
T Consensus       160 ~elf~~L~~~~~  171 (247)
T cd04143         160 DEMFRALFSLAK  171 (247)
T ss_pred             HHHHHHHHHHhc
Confidence            999999998654

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>PLN03118 Rab family protein; Provisional

Probab=100.00  E-value=2.1e-33  Score=194.27  Aligned_cols=168  Identities=38%  Similarity=0.622  Sum_probs=144.6

Q ss_pred             CCCCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCc
Q 030364            5 SNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAA   84 (178)
Q Consensus         5 ~~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d   84 (178)
                      ...+..+||+++|.+|+|||||+++|.++.+. .+.++.+.+.....+..++..+.+.+||+||++.+..++..+++.+|
T Consensus         9 ~~~~~~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d   87 (211)
T PLN03118          9 SGYDLSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQ   87 (211)
T ss_pred             cccCcceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCC
Confidence            34456899999999999999999999988764 47788887777777788888899999999999999999999999999


Q ss_pred             EEEEEEECCCHhHHHHHHH-HHHHHHHhC-CCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHH
Q 030364           85 AAVVVYDITSMDSFERAKK-WVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNE  162 (178)
Q Consensus        85 ~~i~v~d~~~~~s~~~~~~-~~~~~~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  162 (178)
                      ++++|||++++++|+.+.. |...+.... ..+.|+++|+||+|+.....+..++...++..++++|+++||++|.|+++
T Consensus        88 ~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v~~  167 (211)
T PLN03118         88 GIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRENVEQ  167 (211)
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence            9999999999999999876 444454432 35678999999999987777777788888888999999999999999999


Q ss_pred             HHHHHHhhccc
Q 030364          163 LFYEIGDCTEC  173 (178)
Q Consensus       163 ~~~~l~~~i~~  173 (178)
                      +|++|.+.+..
T Consensus       168 l~~~l~~~~~~  178 (211)
T PLN03118        168 CFEELALKIME  178 (211)
T ss_pred             HHHHHHHHHHh
Confidence            99999987754

>cd01862 Rab7 Rab7 subfamily

Probab=100.00  E-value=2e-33  Score=188.67  Aligned_cols=164  Identities=41%  Similarity=0.701  Sum_probs=143.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEEE
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY   90 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~   90 (178)
                      +||+++|++|+|||||++++.++.+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++|++|
T Consensus         1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (172)
T cd01862           1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   80 (172)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence            58999999999999999999999888777788888887778888888899999999999999999999999999999999


Q ss_pred             ECCCHhHHHHHHHHHHHHHHhCC----CCceEEEEEeCCCCccccccCHHHHHHHHHHcC-CeEEEEeCCCCCCHHHHHH
Q 030364           91 DITSMDSFERAKKWVQELQRQGN----PNLIMFLVANKVDLEEKRKVKNEEGELYAQENG-LSFLETSAKSAHNVNELFY  165 (178)
Q Consensus        91 d~~~~~s~~~~~~~~~~~~~~~~----~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~~~  165 (178)
                      |++++++++.+..|...+.....    .+.|+++|+||+|+..+.....+....+.+..+ ++++++|+++|.|++++++
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~  160 (172)
T cd01862          81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAFE  160 (172)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHHH
Confidence            99999999999888877655432    379999999999997656666677777877777 7999999999999999999


Q ss_pred             HHHhhcccc
Q 030364          166 EIGDCTECF  174 (178)
Q Consensus       166 ~l~~~i~~~  174 (178)
                      +|.+.+.+.
T Consensus       161 ~i~~~~~~~  169 (172)
T cd01862         161 TIARKALEQ  169 (172)
T ss_pred             HHHHHHHhc
Confidence            999876543

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=100.00  E-value=5.1e-34  Score=190.42  Aligned_cols=160  Identities=31%  Similarity=0.468  Sum_probs=136.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchh-hhccchhhhcCCcEEEEEE
Q 030364           12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER-YHSLAPMYYRGAAAAVVVY   90 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~-~~~~~~~~~~~~d~~i~v~   90 (178)
                      ||+++|++|+|||||++++..+.+...+.++....+ .....+++..+.+.+||+||+.. +......+++.+|++++||
T Consensus         1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~   79 (165)
T cd04146           1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLY-SRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVY   79 (165)
T ss_pred             CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhc-eEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEE
Confidence            689999999999999999998888776777665444 45567788889999999999875 3445677889999999999


Q ss_pred             ECCCHhHHHHHHHHHHHHHHhC--CCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCC-CCHHHHHHHH
Q 030364           91 DITSMDSFERAKKWVQELQRQG--NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSA-HNVNELFYEI  167 (178)
Q Consensus        91 d~~~~~s~~~~~~~~~~~~~~~--~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~-~~i~~~~~~l  167 (178)
                      |++++++++.+..|+..+....  ..+.|+++|+||+|+...+.+..++...+++..+++|+++||++| .|++++|++|
T Consensus        80 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~l  159 (165)
T cd04146          80 SITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFHEL  159 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHHH
Confidence            9999999999999988887753  457999999999999777777778888899989999999999999 5999999999


Q ss_pred             Hhhcc
Q 030364          168 GDCTE  172 (178)
Q Consensus       168 ~~~i~  172 (178)
                      ++.+.
T Consensus       160 ~~~~~  164 (165)
T cd04146         160 CREVR  164 (165)
T ss_pred             HHHHh
Confidence            98764

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>cd00154 Rab Rab family

Probab=100.00  E-value=2.7e-33  Score=185.25  Aligned_cols=159  Identities=51%  Similarity=0.885  Sum_probs=145.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEEE
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY   90 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~   90 (178)
                      +||+++|++|+|||||++++.++.+...+.++.+.++....+..++..+.+.+||+||+..+...+..+++++|++++|+
T Consensus         1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~   80 (159)
T cd00154           1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY   80 (159)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence            58999999999999999999999998878888888888888888888899999999999999999999999999999999


Q ss_pred             ECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHh
Q 030364           91 DITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIGD  169 (178)
Q Consensus        91 d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  169 (178)
                      |++++++++.+..|+..+........|+++++||+|+..+.....++...++...+++++++|++++.|+++++++|.+
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~  159 (159)
T cd00154          81 DITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQSLAE  159 (159)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHhC
Confidence            9999999999999999988876678999999999999756667778888888888999999999999999999999864

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=100.00  E-value=1.4e-33  Score=189.86  Aligned_cols=158  Identities=32%  Similarity=0.549  Sum_probs=137.0

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEEEEC
Q 030364           13 LVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDI   92 (178)
Q Consensus        13 i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~   92 (178)
                      |+|+|.+|+|||||++++.++.+...+.++....+ ...+..++..+.+.+||+||++.+...+..+++.+|++++|||+
T Consensus         1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~   79 (174)
T smart00174        1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENY-SADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSV   79 (174)
T ss_pred             CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeee-eEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEEC
Confidence            58999999999999999999999887777776554 34567788889999999999999999999999999999999999


Q ss_pred             CCHhHHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCcccc------------ccCHHHHHHHHHHcCC-eEEEEeCCCCC
Q 030364           93 TSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEEKR------------KVKNEEGELYAQENGL-SFLETSAKSAH  158 (178)
Q Consensus        93 ~~~~s~~~~~-~~~~~~~~~~~~~~~~ivv~nK~D~~~~~------------~~~~~~~~~~~~~~~~-~~~~~Sa~~~~  158 (178)
                      +++++|+.+. .|+..+... .++.|+++|+||+|+....            .+..+++..+++..++ +++++||++|.
T Consensus        80 ~~~~s~~~~~~~~~~~i~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~  158 (174)
T smart00174       80 DSPASFENVKEKWYPEVKHF-CPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQE  158 (174)
T ss_pred             CCHHHHHHHHHHHHHHHHhh-CCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCC
Confidence            9999999986 588877765 3689999999999986522            3667778889998886 99999999999


Q ss_pred             CHHHHHHHHHhhcc
Q 030364          159 NVNELFYEIGDCTE  172 (178)
Q Consensus       159 ~i~~~~~~l~~~i~  172 (178)
                      |++++|+.|++.+.
T Consensus       159 ~v~~lf~~l~~~~~  172 (174)
T smart00174      159 GVREVFEEAIRAAL  172 (174)
T ss_pred             CHHHHHHHHHHHhc
Confidence            99999999998764

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>cd01892 Miro2 Miro2 subfamily

Probab=100.00  E-value=1.1e-33  Score=189.38  Aligned_cols=162  Identities=20%  Similarity=0.263  Sum_probs=139.7

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCcCC-CCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEE
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFF-DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i   87 (178)
                      +.+||+++|.+|+|||||++++.++.+. ..+.++.+..+....+.+++..+.+.+||++|++.+...+..+++.+|+++
T Consensus         3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~l   82 (169)
T cd01892           3 NVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVAC   82 (169)
T ss_pred             eEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEEE
Confidence            4789999999999999999999999988 778888888777777788888889999999999999999999999999999


Q ss_pred             EEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCC-eEEEEeCCCCCCHHHHHHH
Q 030364           88 VVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGL-SFLETSAKSAHNVNELFYE  166 (178)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~  166 (178)
                      +|||++++++++.+..|+..+..  ..+.|+++|+||+|+.+.......+...+++.+++ .++++||++|.|++++|+.
T Consensus        83 lv~d~~~~~s~~~~~~~~~~~~~--~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~  160 (169)
T cd01892          83 LVYDSSDPKSFSYCAEVYKKYFM--LGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNELFTK  160 (169)
T ss_pred             EEEeCCCHHHHHHHHHHHHHhcc--CCCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCccHHHHHHH
Confidence            99999999999998888876533  24789999999999965554433455667777777 4799999999999999999


Q ss_pred             HHhhcc
Q 030364          167 IGDCTE  172 (178)
Q Consensus       167 l~~~i~  172 (178)
                      |.+.+.
T Consensus       161 l~~~~~  166 (169)
T cd01892         161 LATAAQ  166 (169)
T ss_pred             HHHHhh
Confidence            998764

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04135 Tc10 TC10 subfamily

Probab=100.00  E-value=3.1e-33  Score=188.14  Aligned_cols=159  Identities=28%  Similarity=0.488  Sum_probs=136.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEEE
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY   90 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~   90 (178)
                      +||+++|++|+|||||++++..+.+...+.++....+ ...+.+++..+.+.+||+||++.+...+..++..+|++++||
T Consensus         1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   79 (174)
T cd04135           1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF   79 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-EEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEE
Confidence            5899999999999999999999998877777765443 445677888899999999999999999999999999999999


Q ss_pred             ECCCHhHHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCccc------------cccCHHHHHHHHHHcCC-eEEEEeCCC
Q 030364           91 DITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEEK------------RKVKNEEGELYAQENGL-SFLETSAKS  156 (178)
Q Consensus        91 d~~~~~s~~~~~-~~~~~~~~~~~~~~~~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~  156 (178)
                      |.+++++|+.+. .|+..+... .++.|+++++||+|+.+.            ..+..+++..+++..++ ++++|||++
T Consensus        80 ~~~~~~s~~~~~~~~~~~l~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~  158 (174)
T cd04135          80 SVVNPASFQNVKEEWVPELKEY-APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALT  158 (174)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCc
Confidence            999999999985 576777655 678999999999998542            25666778888888886 899999999


Q ss_pred             CCCHHHHHHHHHhhc
Q 030364          157 AHNVNELFYEIGDCT  171 (178)
Q Consensus       157 ~~~i~~~~~~l~~~i  171 (178)
                      |.|++++|+.+++.+
T Consensus       159 ~~gi~~~f~~~~~~~  173 (174)
T cd04135         159 QKGLKTVFDEAILAI  173 (174)
T ss_pred             CCCHHHHHHHHHHHh
Confidence            999999999998865

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=100.00  E-value=4.7e-33  Score=187.11  Aligned_cols=157  Identities=26%  Similarity=0.485  Sum_probs=135.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEEE
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY   90 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~   90 (178)
                      +||+++|++|+|||||++++..+.+...+.++.. +........++..+.+.+||+||++.+...+..+++++|++++||
T Consensus         1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~   79 (173)
T cd04130           1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAF-DNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCF   79 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEE
Confidence            5899999999999999999999988887777764 344456777888899999999999999999999999999999999


Q ss_pred             ECCCHhHHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCcc------------ccccCHHHHHHHHHHcCC-eEEEEeCCC
Q 030364           91 DITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE------------KRKVKNEEGELYAQENGL-SFLETSAKS  156 (178)
Q Consensus        91 d~~~~~s~~~~~-~~~~~~~~~~~~~~~~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~  156 (178)
                      |++++++|+.+. .|+..+... .++.|+++++||+|+..            .+.+..+++..+++..+. +++++||++
T Consensus        80 d~~~~~sf~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~  158 (173)
T cd04130          80 SVVNPSSFQNISEKWIPEIRKH-NPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALT  158 (173)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCC
Confidence            999999999985 677777654 45799999999999853            346677788889998887 999999999


Q ss_pred             CCCHHHHHHHHHh
Q 030364          157 AHNVNELFYEIGD  169 (178)
Q Consensus       157 ~~~i~~~~~~l~~  169 (178)
                      |.|++++|+.++-
T Consensus       159 ~~~v~~lf~~~~~  171 (173)
T cd04130         159 QKNLKEVFDTAIL  171 (173)
T ss_pred             CCCHHHHHHHHHh
Confidence            9999999998764

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>cd04148 RGK RGK subfamily

Probab=100.00  E-value=2.7e-33  Score=194.63  Aligned_cols=161  Identities=30%  Similarity=0.374  Sum_probs=137.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCcCC-CCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhc-CCcEEEE
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVKGQFF-DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYR-GAAAAVV   88 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~-~~d~~i~   88 (178)
                      +||+++|++|+|||||++++..+.+. ..+.++.+.+.....+.+++..+.+.+||++|++.  .....++. .+|++++
T Consensus         1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~--~~~~~~~~~~ad~iil   78 (221)
T cd04148           1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM--WTEDSCMQYQGDAFVV   78 (221)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch--HHHhHHhhcCCCEEEE
Confidence            58999999999999999999888876 55666665566677778888889999999999972  23344566 8999999


Q ss_pred             EEECCCHhHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Q 030364           89 VYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI  167 (178)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  167 (178)
                      |||++++.+|+.+..|+..+.... ..+.|+++|+||+|+...+.+..++...++...+++++++||++|.|++++|++|
T Consensus        79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~l  158 (221)
T cd04148          79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEGI  158 (221)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence            999999999999999998887754 3689999999999998777777777888888889999999999999999999999


Q ss_pred             Hhhccc
Q 030364          168 GDCTEC  173 (178)
Q Consensus       168 ~~~i~~  173 (178)
                      ++.+..
T Consensus       159 ~~~~~~  164 (221)
T cd04148         159 VRQIRL  164 (221)
T ss_pred             HHHHHh
Confidence            998864

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=1e-35  Score=182.91  Aligned_cols=162  Identities=38%  Similarity=0.703  Sum_probs=151.5

Q ss_pred             EEEcCCCCCHHHHHHHHHhCcCC-CCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEEEEC
Q 030364           14 VLLGDMGTGKTSLVLRFVKGQFF-DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDI   92 (178)
Q Consensus        14 ~v~G~~~~GKStl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~   92 (178)
                      +++|.+++|||+|+-++..+.|. ....++.+.++..+.+..++..+++++||+.|+++|++....|++.+|+++++||+
T Consensus         1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi   80 (192)
T KOG0083|consen    1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI   80 (192)
T ss_pred             CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence            36899999999999888877764 45678999999999999999999999999999999999999999999999999999


Q ss_pred             CCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHhhcc
Q 030364           93 TSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIGDCTE  172 (178)
Q Consensus        93 ~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~  172 (178)
                      .++.||++.+.|+.++..+....+.+++++||+|+...+.+..++...+++.+++|++++||++|.+++..|..|.+.+.
T Consensus        81 ankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia~~l~  160 (192)
T KOG0083|consen   81 ANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIAEELK  160 (192)
T ss_pred             ccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhccccchHHHHHHHHCCCceeccccccccHhHHHHHHHHHHH
Confidence            99999999999999999988888889999999999888999999999999999999999999999999999999999888


Q ss_pred             ccc
Q 030364          173 CFS  175 (178)
Q Consensus       173 ~~~  175 (178)
                      +.+
T Consensus       161 k~~  163 (192)
T KOG0083|consen  161 KLK  163 (192)
T ss_pred             Hhc
Confidence            765

>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4e-35  Score=185.28  Aligned_cols=168  Identities=33%  Similarity=0.555  Sum_probs=152.1

Q ss_pred             CCCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEe---------CCeEEEEEEEeCCCchhhhccc
Q 030364            6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSL---------NEVTIKFDIWDTAGQERYHSLA   76 (178)
Q Consensus         6 ~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~i~d~~g~~~~~~~~   76 (178)
                      +-+.-+|.+.+|.+|+||||++.+++.++|.....++.+.+...+.+.+         .+..+.+++|||.|+++|+++.
T Consensus         5 dydylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLT   84 (219)
T KOG0081|consen    5 DYDYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLT   84 (219)
T ss_pred             cHHHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHH
Confidence            3456788999999999999999999999999999999999887777655         2356889999999999999999


Q ss_pred             hhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCC
Q 030364           77 PMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAK  155 (178)
Q Consensus        77 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  155 (178)
                      ..+++.+-+++++||+++..||-+++.|+..+..+. +.+..+++++||+|+++.+.+..+++..+++.+++|||++||-
T Consensus        85 TAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA~  164 (219)
T KOG0081|consen   85 TAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSAC  164 (219)
T ss_pred             HHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeeccc
Confidence            999999999999999999999999999999998875 4566689999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHhhccc
Q 030364          156 SAHNVNELFYEIGDCTEC  173 (178)
Q Consensus       156 ~~~~i~~~~~~l~~~i~~  173 (178)
                      +|.++++..+.|...+.+
T Consensus       165 tg~Nv~kave~LldlvM~  182 (219)
T KOG0081|consen  165 TGTNVEKAVELLLDLVMK  182 (219)
T ss_pred             cCcCHHHHHHHHHHHHHH
Confidence            999999998888776654

>cd00876 Ras Ras family

Probab=100.00  E-value=2.6e-32  Score=181.01  Aligned_cols=159  Identities=36%  Similarity=0.605  Sum_probs=140.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEEEE
Q 030364           12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYD   91 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d   91 (178)
                      ||+++|++|+|||||+++++++.+...+.++.. +........++..+.+++||+||+..+...+..++..+|++++|||
T Consensus         1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d   79 (160)
T cd00876           1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYS   79 (160)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEE
Confidence            689999999999999999998887777777766 4556666777778899999999999999999999999999999999


Q ss_pred             CCCHhHHHHHHHHHHHHHHhCC-CCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHhh
Q 030364           92 ITSMDSFERAKKWVQELQRQGN-PNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIGDC  170 (178)
Q Consensus        92 ~~~~~s~~~~~~~~~~~~~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  170 (178)
                      .+++++++.+..|+..+..... ...|+++++||+|+........+....++..++++++++|++++.|+++++++|.+.
T Consensus        80 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~  159 (160)
T cd00876          80 ITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLLVRE  159 (160)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHhh
Confidence            9999999999999888877644 689999999999998767777788888888888999999999999999999999876


Q ss_pred             c
Q 030364          171 T  171 (178)
Q Consensus       171 i  171 (178)
                      +
T Consensus       160 i  160 (160)
T cd00876         160 I  160 (160)
T ss_pred             C
Confidence            4

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=100.00  E-value=4.7e-32  Score=180.54  Aligned_cols=161  Identities=33%  Similarity=0.575  Sum_probs=140.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEEE
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY   90 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~   90 (178)
                      +||+++|.+|+|||||++++..+.+...+.++....+ ......++..+.+.+||+||+..+...+..+++.++++++|+
T Consensus         1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   79 (164)
T cd04139           1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVF   79 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhE-EEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEE
Confidence            5899999999999999999999888777777765443 455677888899999999999999999999999999999999


Q ss_pred             ECCCHhHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHh
Q 030364           91 DITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIGD  169 (178)
Q Consensus        91 d~~~~~s~~~~~~~~~~~~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  169 (178)
                      |++++.+++.+..|+..+.... ..+.|+++|+||+|+.........+...+++.++++++++||++|.|++++|++|.+
T Consensus        80 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  159 (164)
T cd04139          80 SITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLVR  159 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHHH
Confidence            9999999999999988887753 368999999999999765555667777788888899999999999999999999998


Q ss_pred             hcc
Q 030364          170 CTE  172 (178)
Q Consensus       170 ~i~  172 (178)
                      .+.
T Consensus       160 ~~~  162 (164)
T cd04139         160 EIR  162 (164)
T ss_pred             HHH
Confidence            764

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>cd04149 Arf6 Arf6 subfamily

Probab=100.00  E-value=1.2e-32  Score=184.08  Aligned_cols=156  Identities=22%  Similarity=0.364  Sum_probs=124.1

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEE
Q 030364            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (178)
Q Consensus         8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i   87 (178)
                      .+.+||+++|++|+|||||++++..+.+.. +.|+.+.+..  ....  ..+.+++||+||++.+...+..+++.+|++|
T Consensus         7 ~~~~kv~i~G~~~~GKTsli~~l~~~~~~~-~~~t~g~~~~--~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii   81 (168)
T cd04149           7 NKEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVE--TVTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLI   81 (168)
T ss_pred             CCccEEEEECcCCCCHHHHHHHHccCCCcc-ccCCcccceE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence            457899999999999999999998877653 5666665543  2222  4578999999999999999999999999999


Q ss_pred             EEEECCCHhHHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCccccccCHHHHHHHHHH-----cCCeEEEEeCCCCCCHH
Q 030364           88 VVYDITSMDSFERAKKWVQELQRQ-GNPNLIMFLVANKVDLEEKRKVKNEEGELYAQE-----NGLSFLETSAKSAHNVN  161 (178)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~i~  161 (178)
                      +|||++++.+++.+..++..+... ..++.|+++|+||+|+.+.  +..++...+.+.     ..++++++||++|.|++
T Consensus        82 ~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~  159 (168)
T cd04149          82 FVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDA--MKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLY  159 (168)
T ss_pred             EEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccC--CCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChH
Confidence            999999999999988877776543 2467899999999998652  344455444321     23578999999999999


Q ss_pred             HHHHHHHhh
Q 030364          162 ELFYEIGDC  170 (178)
Q Consensus       162 ~~~~~l~~~  170 (178)
                      ++|+||.++
T Consensus       160 ~~~~~l~~~  168 (168)
T cd04149         160 EGLTWLSSN  168 (168)
T ss_pred             HHHHHHhcC
Confidence            999999753

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>cd01870 RhoA_like RhoA-like subfamily

Probab=100.00  E-value=8.1e-32  Score=181.39  Aligned_cols=159  Identities=35%  Similarity=0.566  Sum_probs=133.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEEE
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY   90 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~   90 (178)
                      .||+++|++|||||||++++.++.+...+.++.+.... ..+.+++..+.+.+||++|++.+...+..++..+|++++||
T Consensus         2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (175)
T cd01870           2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF   80 (175)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceE-EEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence            68999999999999999999999988777777765543 35577888899999999999999998888899999999999


Q ss_pred             ECCCHhHHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCccc------------cccCHHHHHHHHHHcCC-eEEEEeCCC
Q 030364           91 DITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEEK------------RKVKNEEGELYAQENGL-SFLETSAKS  156 (178)
Q Consensus        91 d~~~~~s~~~~~-~~~~~~~~~~~~~~~~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~  156 (178)
                      |++++++++.+. .|...+... .++.|+++|+||+|+...            ..+...+...+++..+. ++++|||++
T Consensus        81 ~~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~  159 (175)
T cd01870          81 SIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKT  159 (175)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEecccc
Confidence            999999999985 466666554 458999999999998542            22445667777777764 899999999


Q ss_pred             CCCHHHHHHHHHhhc
Q 030364          157 AHNVNELFYEIGDCT  171 (178)
Q Consensus       157 ~~~i~~~~~~l~~~i  171 (178)
                      |.|++++|++|.+..
T Consensus       160 ~~~v~~lf~~l~~~~  174 (175)
T cd01870         160 KEGVREVFEMATRAA  174 (175)
T ss_pred             CcCHHHHHHHHHHHh
Confidence            999999999998754

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=100.00  E-value=1.3e-31  Score=181.16  Aligned_cols=163  Identities=34%  Similarity=0.499  Sum_probs=140.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEEE
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY   90 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~   90 (178)
                      .||+++|.+|+|||||++++..+.+...+.++..... ...+..++..+.+.+||+||++.+...+..++..+++++++|
T Consensus         2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (180)
T cd04137           2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY   80 (180)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence            6899999999999999999999888766666665443 445566777888999999999999999999999999999999


Q ss_pred             ECCCHhHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHh
Q 030364           91 DITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIGD  169 (178)
Q Consensus        91 d~~~~~s~~~~~~~~~~~~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  169 (178)
                      |.++..+++.+..|+..+.... ..+.|+++++||+|+...+.+...+...+++..+++++++||+++.|+++++.+|.+
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~  160 (180)
T cd04137          81 SVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSARENENVEEAFELLIE  160 (180)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence            9999999999999988877653 467899999999999766666666677778888899999999999999999999998


Q ss_pred             hcccc
Q 030364          170 CTECF  174 (178)
Q Consensus       170 ~i~~~  174 (178)
                      .+...
T Consensus       161 ~~~~~  165 (180)
T cd04137         161 EIEKV  165 (180)
T ss_pred             HHHHh
Confidence            87654

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=100.00  E-value=1.8e-32  Score=184.44  Aligned_cols=158  Identities=22%  Similarity=0.351  Sum_probs=123.5

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEE
Q 030364            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (178)
Q Consensus         8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i   87 (178)
                      .+.+||+++|++|+|||||++++..+.+.. +.|+.+.+...  ...  ..+.+.+||+||++.+...+..+++++|++|
T Consensus        11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~~~-~~~t~~~~~~~--~~~--~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii   85 (175)
T smart00177       11 NKEMRILMVGLDAAGKTTILYKLKLGESVT-TIPTIGFNVET--VTY--KNISFTVWDVGGQDKIRPLWRHYYTNTQGLI   85 (175)
T ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCCCC-cCCccccceEE--EEE--CCEEEEEEECCCChhhHHHHHHHhCCCCEEE
Confidence            347999999999999999999998777643 56666655432  233  3578999999999999999999999999999


Q ss_pred             EEEECCCHhHHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCccccccCHHHHHHHH-----HHcCCeEEEEeCCCCCCHH
Q 030364           88 VVYDITSMDSFERAKKWVQELQRQ-GNPNLIMFLVANKVDLEEKRKVKNEEGELYA-----QENGLSFLETSAKSAHNVN  161 (178)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~  161 (178)
                      +|||++++++++....++..+... ..++.|++||+||+|+.+..  ..++.....     +...+.++++||++|.|++
T Consensus        86 ~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~  163 (175)
T smart00177       86 FVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAM--KAAEITEKLGLHSIRDRNWYIQPTCATSGDGLY  163 (175)
T ss_pred             EEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCC--CHHHHHHHhCccccCCCcEEEEEeeCCCCCCHH
Confidence            999999999999988888777543 24678999999999986532  222222211     1123467899999999999


Q ss_pred             HHHHHHHhhcc
Q 030364          162 ELFYEIGDCTE  172 (178)
Q Consensus       162 ~~~~~l~~~i~  172 (178)
                      ++|+||.+.+.
T Consensus       164 e~~~~l~~~~~  174 (175)
T smart00177      164 EGLTWLSNNLK  174 (175)
T ss_pred             HHHHHHHHHhc
Confidence            99999987653

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=100.00  E-value=8.1e-33  Score=184.34  Aligned_cols=152  Identities=22%  Similarity=0.312  Sum_probs=126.4

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEEEEC
Q 030364           13 LVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDI   92 (178)
Q Consensus        13 i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~   92 (178)
                      |+++|++|+|||||++++.++.+...+.|+.+...    ..++...+.+.+||++|++.+...+..+++.+|++++|||.
T Consensus         2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~----~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~   77 (164)
T cd04162           2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS----VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDS   77 (164)
T ss_pred             EEEECCCCCCHHHHHHHHhcCCCcccccccCCcce----EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEEC
Confidence            79999999999999999999888777778876542    23445568899999999999999999999999999999999


Q ss_pred             CCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCH----HHHHHHHHHcCCeEEEEeCCC------CCCHHH
Q 030364           93 TSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKN----EEGELYAQENGLSFLETSAKS------AHNVNE  162 (178)
Q Consensus        93 ~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~----~~~~~~~~~~~~~~~~~Sa~~------~~~i~~  162 (178)
                      +++.++...+.|+..+.... ++.|+++|+||+|+...+.+..    .....+++..++++++|||++      ++|+++
T Consensus        78 t~~~s~~~~~~~l~~~~~~~-~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~~  156 (164)
T cd04162          78 ADSERLPLARQELHQLLQHP-PDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVKD  156 (164)
T ss_pred             CCHHHHHHHHHHHHHHHhCC-CCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHHH
Confidence            99999999988888876543 6899999999999876554322    123455666788999999888      999999


Q ss_pred             HHHHHHh
Q 030364          163 LFYEIGD  169 (178)
Q Consensus       163 ~~~~l~~  169 (178)
                      +|+.++.
T Consensus       157 ~~~~~~~  163 (164)
T cd04162         157 LLSQLIN  163 (164)
T ss_pred             HHHHHhc
Confidence            9998864

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>cd04129 Rho2 Rho2 subfamily

Probab=100.00  E-value=2.9e-31  Score=180.43  Aligned_cols=164  Identities=31%  Similarity=0.529  Sum_probs=136.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEE
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVV   89 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v   89 (178)
                      +.||+++|++|+|||||++++..+.+.+.+.++....+. ..+.+++..+.+.+||++|++.+....+.++..+|+++++
T Consensus         1 ~~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv   79 (187)
T cd04129           1 RRKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYV-TDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIG   79 (187)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEE-EEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEE
Confidence            368999999999999999999988887766666554443 3556677788899999999988887777788999999999


Q ss_pred             EECCCHhHHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCcc----------ccccCHHHHHHHHHHcCC-eEEEEeCCCC
Q 030364           90 YDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE----------KRKVKNEEGELYAQENGL-SFLETSAKSA  157 (178)
Q Consensus        90 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~ivv~nK~D~~~----------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~  157 (178)
                      ||++++++++.+. .|+..+..+ .++.|+++|+||+|+..          .+.+..++...+++..++ ++++|||++|
T Consensus        80 ~~i~~~~s~~~~~~~~~~~i~~~-~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~  158 (187)
T cd04129          80 FAVDTPDSLENVRTKWIEEVRRY-CPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTG  158 (187)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHh-CCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCC
Confidence            9999999999986 587877765 45799999999999854          234455677888888885 8999999999


Q ss_pred             CCHHHHHHHHHhhccccc
Q 030364          158 HNVNELFYEIGDCTECFS  175 (178)
Q Consensus       158 ~~i~~~~~~l~~~i~~~~  175 (178)
                      .|++++|+++.+.+...+
T Consensus       159 ~~v~~~f~~l~~~~~~~~  176 (187)
T cd04129         159 EGVDDVFEAATRAALLVR  176 (187)
T ss_pred             CCHHHHHHHHHHHHhccc
Confidence            999999999998776544

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>cd00157 Rho Rho (Ras homology) family

Probab=100.00  E-value=2.9e-31  Score=177.98  Aligned_cols=157  Identities=32%  Similarity=0.607  Sum_probs=131.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEEE
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY   90 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~   90 (178)
                      +||+++|.+|+|||||+++|.++.+...+.++.... .......++..+.+.+||+||++.+......+++.+|++++||
T Consensus         1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   79 (171)
T cd00157           1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDN-YSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICF   79 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeee-eEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEE
Confidence            589999999999999999999998866666666543 3445567788899999999999988888888889999999999


Q ss_pred             ECCCHhHHHHHHH-HHHHHHHhCCCCceEEEEEeCCCCcccc-----------ccCHHHHHHHHHHcCC-eEEEEeCCCC
Q 030364           91 DITSMDSFERAKK-WVQELQRQGNPNLIMFLVANKVDLEEKR-----------KVKNEEGELYAQENGL-SFLETSAKSA  157 (178)
Q Consensus        91 d~~~~~s~~~~~~-~~~~~~~~~~~~~~~ivv~nK~D~~~~~-----------~~~~~~~~~~~~~~~~-~~~~~Sa~~~  157 (178)
                      |.++++++..... |+..+... .++.|+++|+||+|+....           .+..++...++..+++ +++++||++|
T Consensus        80 d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~  158 (171)
T cd00157          80 SVDSPSSFENVKTKWIPEIRHY-CPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQ  158 (171)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCC
Confidence            9999999888654 55555554 4589999999999986554           2346677778888887 9999999999


Q ss_pred             CCHHHHHHHHHh
Q 030364          158 HNVNELFYEIGD  169 (178)
Q Consensus       158 ~~i~~~~~~l~~  169 (178)
                      .|+++++++|++
T Consensus       159 ~gi~~l~~~i~~  170 (171)
T cd00157         159 EGVKEVFEEAIR  170 (171)
T ss_pred             CCHHHHHHHHhh
Confidence            999999999876

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>KOG0395 consensus Ras-related GTPase [General function prediction only]

Probab=100.00  E-value=5.2e-32  Score=183.68  Aligned_cols=164  Identities=36%  Similarity=0.582  Sum_probs=152.1

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEE
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVV   88 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~   88 (178)
                      ...||+++|.+|+|||+|..++..+.|...+.|+.+ +.+.+...+++..+.+.|+|++|++++..+...++..+|++++
T Consensus         2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~l   80 (196)
T KOG0395|consen    2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLL   80 (196)
T ss_pred             CceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEE
Confidence            468999999999999999999999999999999998 5557777888999999999999999999999999999999999


Q ss_pred             EEECCCHhHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Q 030364           89 VYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI  167 (178)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  167 (178)
                      ||+++++.||+.+..++..+.+.. ....|+++|+||+|+...+.+..+++..++..++++|+++||+.+.+++++|..|
T Consensus        81 Vysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~~L  160 (196)
T KOG0395|consen   81 VYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFYEL  160 (196)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHHHH
Confidence            999999999999999999985533 4568999999999999989999999999999999999999999999999999999


Q ss_pred             Hhhccc
Q 030364          168 GDCTEC  173 (178)
Q Consensus       168 ~~~i~~  173 (178)
                      .+.+..
T Consensus       161 ~r~~~~  166 (196)
T KOG0395|consen  161 VREIRL  166 (196)
T ss_pred             HHHHHh
Confidence            998876

>cd04147 Ras_dva Ras-dva subfamily

Probab=100.00  E-value=2.1e-31  Score=182.69  Aligned_cols=160  Identities=27%  Similarity=0.416  Sum_probs=133.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEEEE
Q 030364           12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYD   91 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d   91 (178)
                      ||+++|.+|+|||||++++..+.+...+.++.. ......+.+.+..+.+.+||+||+..+..++..++..+|++++|||
T Consensus         1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d   79 (198)
T cd04147           1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYA   79 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEE
Confidence            689999999999999999999988776666664 3444566777888899999999999998888889999999999999


Q ss_pred             CCCHhHHHHHHHHHHHHHHhCC-CCceEEEEEeCCCCcc-ccccCHHHHHHHHH-HcCCeEEEEeCCCCCCHHHHHHHHH
Q 030364           92 ITSMDSFERAKKWVQELQRQGN-PNLIMFLVANKVDLEE-KRKVKNEEGELYAQ-ENGLSFLETSAKSAHNVNELFYEIG  168 (178)
Q Consensus        92 ~~~~~s~~~~~~~~~~~~~~~~-~~~~~ivv~nK~D~~~-~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~~~~~l~  168 (178)
                      ++++++++.+..|+..+..... .+.|+++|+||+|+.. ...+.......... ..+++++++||++|.|++++|++|+
T Consensus        80 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~  159 (198)
T cd04147          80 VDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKELL  159 (198)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHHH
Confidence            9999999999999888877543 5799999999999865 34444444443333 4567999999999999999999999


Q ss_pred             hhcc
Q 030364          169 DCTE  172 (178)
Q Consensus       169 ~~i~  172 (178)
                      +.+.
T Consensus       160 ~~~~  163 (198)
T cd04147         160 RQAN  163 (198)
T ss_pred             HHhh
Confidence            8765

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=100.00  E-value=2.1e-32  Score=181.51  Aligned_cols=152  Identities=20%  Similarity=0.359  Sum_probs=119.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEEE
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY   90 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~   90 (178)
                      +||+++|.++||||||++++..+.+.. +.|+.+.+..  .+..  ..+.+.+||+||++.+...+..+++++|++++||
T Consensus         1 ~kv~~~G~~~~GKTsli~~l~~~~~~~-~~pt~g~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~   75 (159)
T cd04150           1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   75 (159)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCcc-cCCCCCcceE--EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence            589999999999999999998887764 6677665442  2333  3578899999999999999999999999999999


Q ss_pred             ECCCHhHHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCccccccCHHH-HHHHH----HHcCCeEEEEeCCCCCCHHHHH
Q 030364           91 DITSMDSFERAKKWVQELQRQ-GNPNLIMFLVANKVDLEEKRKVKNEE-GELYA----QENGLSFLETSAKSAHNVNELF  164 (178)
Q Consensus        91 d~~~~~s~~~~~~~~~~~~~~-~~~~~~~ivv~nK~D~~~~~~~~~~~-~~~~~----~~~~~~~~~~Sa~~~~~i~~~~  164 (178)
                      |++++.+++.+..++..+... ...+.|+++++||+|+.+...  ..+ ...+.    ....+.++++||++|.|++++|
T Consensus        76 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~  153 (159)
T cd04150          76 DSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMS--AAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGL  153 (159)
T ss_pred             eCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCC--HHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHH
Confidence            999999999988877776543 235689999999999865322  222 22221    1224568899999999999999


Q ss_pred             HHHHh
Q 030364          165 YEIGD  169 (178)
Q Consensus       165 ~~l~~  169 (178)
                      +||.+
T Consensus       154 ~~l~~  158 (159)
T cd04150         154 DWLSN  158 (159)
T ss_pred             HHHhc
Confidence            99975

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>PLN00223 ADP-ribosylation factor; Provisional

Probab=100.00  E-value=1.4e-31  Score=180.95  Aligned_cols=159  Identities=19%  Similarity=0.293  Sum_probs=123.8

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEE
Q 030364            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (178)
Q Consensus         8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i   87 (178)
                      .+.+||+++|.++||||||++++..+.+.. +.|+.+.+..  .+..  ..+.+++||+||++.+...+..+++++|++|
T Consensus        15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~~-~~pt~g~~~~--~~~~--~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI   89 (181)
T PLN00223         15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLI   89 (181)
T ss_pred             CCccEEEEECCCCCCHHHHHHHHccCCCcc-ccCCcceeEE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence            456899999999999999999998877753 5667665442  2333  3578899999999999999999999999999


Q ss_pred             EEEECCCHhHHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCccccccCHHHHHHHHHHc-----CCeEEEEeCCCCCCHH
Q 030364           88 VVYDITSMDSFERAKKWVQELQRQ-GNPNLIMFLVANKVDLEEKRKVKNEEGELYAQEN-----GLSFLETSAKSAHNVN  161 (178)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~-----~~~~~~~Sa~~~~~i~  161 (178)
                      +|||++++++++.+..++..+... ..++.|++|++||+|+++..  ..++........     .+.++++||++|+|++
T Consensus        90 ~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~  167 (181)
T PLN00223         90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY  167 (181)
T ss_pred             EEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCC--CHHHHHHHhCccccCCCceEEEeccCCCCCCHH
Confidence            999999999999888777766542 23679999999999987643  223322222111     1246789999999999


Q ss_pred             HHHHHHHhhccc
Q 030364          162 ELFYEIGDCTEC  173 (178)
Q Consensus       162 ~~~~~l~~~i~~  173 (178)
                      ++|+||.+.+..
T Consensus       168 e~~~~l~~~~~~  179 (181)
T PLN00223        168 EGLDWLSNNIAN  179 (181)
T ss_pred             HHHHHHHHHHhh
Confidence            999999987653

>cd04158 ARD1 ARD1 subfamily

Probab=100.00  E-value=1.2e-31  Score=179.67  Aligned_cols=155  Identities=23%  Similarity=0.331  Sum_probs=124.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEEEE
Q 030364           12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYD   91 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d   91 (178)
                      ||+++|.++||||||++++.++.+.. +.+|.+....  ....  ..+.+.+||+||+..+...+..+++.+|++++|+|
T Consensus         1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~--~~~~--~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D   75 (169)
T cd04158           1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVE--TVEY--KNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVD   75 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEE--EEEE--CCEEEEEEECCCChhcchHHHHHhccCCEEEEEEe
Confidence            68999999999999999999886654 5666654442  2233  35788999999999999999999999999999999


Q ss_pred             CCCHhHHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCccccccCHHHHHHHHHHcC------CeEEEEeCCCCCCHHHHH
Q 030364           92 ITSMDSFERAKKWVQELQRQ-GNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENG------LSFLETSAKSAHNVNELF  164 (178)
Q Consensus        92 ~~~~~s~~~~~~~~~~~~~~-~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~------~~~~~~Sa~~~~~i~~~~  164 (178)
                      .+++++++.+..|+..+... ...+.|+++++||+|+..  .+..++...+.+..+      +.+++|||++|.|++++|
T Consensus        76 ~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f  153 (169)
T cd04158          76 SSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAG--ALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGL  153 (169)
T ss_pred             CCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCccc--CCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHH
Confidence            99999999999988887653 245689999999999864  344455555543222      378899999999999999


Q ss_pred             HHHHhhccc
Q 030364          165 YEIGDCTEC  173 (178)
Q Consensus       165 ~~l~~~i~~  173 (178)
                      +||.+.+..
T Consensus       154 ~~l~~~~~~  162 (169)
T cd04158         154 DWLSRQLVA  162 (169)
T ss_pred             HHHHHHHhh
Confidence            999987653

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>cd04154 Arl2 Arl2 subfamily

Probab=100.00  E-value=2.1e-31  Score=179.06  Aligned_cols=158  Identities=21%  Similarity=0.297  Sum_probs=124.4

Q ss_pred             CCCCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCc
Q 030364            5 SNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAA   84 (178)
Q Consensus         5 ~~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d   84 (178)
                      ..+...++|+++|++|+|||||++++.+..+ ..+.++.+..  ...+..+  .+.+.+||+||++.+...+..+++.+|
T Consensus         9 ~~~~~~~kv~ivG~~~~GKTsL~~~l~~~~~-~~~~~t~g~~--~~~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~~d   83 (173)
T cd04154           9 KLKEREMRILILGLDNAGKTTILKKLLGEDI-DTISPTLGFQ--IKTLEYE--GYKLNIWDVGGQKTLRPYWRNYFESTD   83 (173)
T ss_pred             hcCCCccEEEEECCCCCCHHHHHHHHccCCC-CCcCCccccc--eEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCC
Confidence            3445678999999999999999999997744 3455665533  2333444  477899999999998888999999999


Q ss_pred             EEEEEEECCCHhHHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCccccccCHHHHHHHHH-----HcCCeEEEEeCCCCC
Q 030364           85 AAVVVYDITSMDSFERAKKWVQELQRQ-GNPNLIMFLVANKVDLEEKRKVKNEEGELYAQ-----ENGLSFLETSAKSAH  158 (178)
Q Consensus        85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~  158 (178)
                      ++++|+|++++.+++....|+..+... ...+.|+++|+||+|+.+..  ..++...+..     ..+++++++||++|.
T Consensus        84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~  161 (173)
T cd04154          84 ALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGAL--SEEEIREALELDKISSHHWRIQPCSAVTGE  161 (173)
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCC--CHHHHHHHhCccccCCCceEEEeccCCCCc
Confidence            999999999999999988888776543 34689999999999986533  3344444432     245789999999999


Q ss_pred             CHHHHHHHHHh
Q 030364          159 NVNELFYEIGD  169 (178)
Q Consensus       159 ~i~~~~~~l~~  169 (178)
                      |++++|++|++
T Consensus       162 gi~~l~~~l~~  172 (173)
T cd04154         162 GLLQGIDWLVD  172 (173)
T ss_pred             CHHHHHHHHhc
Confidence            99999999875

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=100.00  E-value=5.6e-32  Score=183.06  Aligned_cols=159  Identities=19%  Similarity=0.317  Sum_probs=122.8

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEE
Q 030364            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (178)
Q Consensus         8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i   87 (178)
                      .+.+||+++|++|+|||||++++..+.+.. +.||.+.+..  .+..  ..+.+.+||+||++.+...+..+++.+|++|
T Consensus        15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI   89 (182)
T PTZ00133         15 KKEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE--TVEY--KNLKFTMWDVGGQDKLRPLWRHYYQNTNGLI   89 (182)
T ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE--EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence            346899999999999999999998877764 5566665443  2223  4578899999999999999999999999999


Q ss_pred             EEEECCCHhHHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCccccccCHHHHHHHH-----HHcCCeEEEEeCCCCCCHH
Q 030364           88 VVYDITSMDSFERAKKWVQELQRQ-GNPNLIMFLVANKVDLEEKRKVKNEEGELYA-----QENGLSFLETSAKSAHNVN  161 (178)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~  161 (178)
                      +|+|++++++++....++..+... ...+.|+++|+||.|+++..  ..++.....     +...+.++++||++|.|++
T Consensus        90 ~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~  167 (182)
T PTZ00133         90 FVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAM--STTEVTEKLGLHSVRQRNWYIQGCCATTAQGLY  167 (182)
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCC--CHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHH
Confidence            999999999999988777766432 23578999999999986522  222221111     1122467799999999999


Q ss_pred             HHHHHHHhhccc
Q 030364          162 ELFYEIGDCTEC  173 (178)
Q Consensus       162 ~~~~~l~~~i~~  173 (178)
                      ++|+||.+.+.+
T Consensus       168 e~~~~l~~~i~~  179 (182)
T PTZ00133        168 EGLDWLSANIKK  179 (182)
T ss_pred             HHHHHHHHHHHH
Confidence            999999987643

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=100.00  E-value=2.4e-31  Score=180.27  Aligned_cols=162  Identities=25%  Similarity=0.311  Sum_probs=127.6

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEe-CCeEEEEEEEeCCCchhhhccchhhhcCCcEEE
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSL-NEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i   87 (178)
                      +.+||+++|.+|||||||++++..+.+.. ..++.+.+.....+.. ++..+.+.+||+||++.+...+..+++.+|+++
T Consensus         2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii   80 (183)
T cd04152           2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVN-TVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIV   80 (183)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCcCC-cCCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEE
Confidence            46899999999999999999999888765 3566555554444443 446688999999999999999999999999999


Q ss_pred             EEEECCCHhHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCccccccCHHHHHHHHHH------cCCeEEEEeCCCCCCH
Q 030364           88 VVYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQE------NGLSFLETSAKSAHNV  160 (178)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~------~~~~~~~~Sa~~~~~i  160 (178)
                      +|+|++++++++.+..|+..+.... ..+.|+++|+||+|+...  ...++...+...      ..++++++||++|.|+
T Consensus        81 ~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi  158 (183)
T cd04152          81 FVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNA--LSVSEVEKLLALHELSASTPWHVQPACAIIGEGL  158 (183)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCcccc--CCHHHHHHHhCccccCCCCceEEEEeecccCCCH
Confidence            9999999999998888887776542 357999999999998642  223333333321      1357899999999999


Q ss_pred             HHHHHHHHhhccc
Q 030364          161 NELFYEIGDCTEC  173 (178)
Q Consensus       161 ~~~~~~l~~~i~~  173 (178)
                      ++++++|.+.+..
T Consensus       159 ~~l~~~l~~~l~~  171 (183)
T cd04152         159 QEGLEKLYEMILK  171 (183)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999987743

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=100.00  E-value=2.3e-30  Score=179.64  Aligned_cols=166  Identities=30%  Similarity=0.510  Sum_probs=143.7

Q ss_pred             CCCCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCc
Q 030364            5 SNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAA   84 (178)
Q Consensus         5 ~~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d   84 (178)
                      ......+||+++|++|||||||++++..+.+...+.++.+.++....+..++..+.+.+||++|++.+...+..++..++
T Consensus         4 ~~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~   83 (215)
T PTZ00132          4 MDEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQ   83 (215)
T ss_pred             ccCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCC
Confidence            44556899999999999999999988888888888999998888888878888999999999999999989999999999


Q ss_pred             EEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Q 030364           85 AAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELF  164 (178)
Q Consensus        85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  164 (178)
                      ++++|||++++.++..+..|+..+... ..+.|+++++||+|+... .... +...+++..++.++++||++|.|+++.|
T Consensus        84 ~~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~i~lv~nK~Dl~~~-~~~~-~~~~~~~~~~~~~~e~Sa~~~~~v~~~f  160 (215)
T PTZ00132         84 CAIIMFDVTSRITYKNVPNWHRDIVRV-CENIPIVLVGNKVDVKDR-QVKA-RQITFHRKKNLQYYDISAKSNYNFEKPF  160 (215)
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHh-CCCCCEEEEEECccCccc-cCCH-HHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence            999999999999999999999888765 367899999999998643 2322 3345677788999999999999999999


Q ss_pred             HHHHhhccc
Q 030364          165 YEIGDCTEC  173 (178)
Q Consensus       165 ~~l~~~i~~  173 (178)
                      .+|++.+..
T Consensus       161 ~~ia~~l~~  169 (215)
T PTZ00132        161 LWLARRLTN  169 (215)
T ss_pred             HHHHHHHhh
Confidence            999987653

>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.3e-31  Score=164.26  Aligned_cols=166  Identities=42%  Similarity=0.741  Sum_probs=155.2

Q ss_pred             CCCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcE
Q 030364            6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAA   85 (178)
Q Consensus         6 ~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~   85 (178)
                      +-...+|-+++|.-|+|||+|+..+...+|...-..+.+...-...+.+.+..+++++||+.|+++|+.....|++++.+
T Consensus         7 nysyifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaag   86 (215)
T KOG0097|consen    7 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAG   86 (215)
T ss_pred             chhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccc
Confidence            34568899999999999999999999999988788889999999999999999999999999999999999999999999


Q ss_pred             EEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Q 030364           86 AVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFY  165 (178)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  165 (178)
                      .+.|||++.+..+..+..|+........|+..+++++||.|+..++.+..+++..|+.++++.+.++||++|.++++.|-
T Consensus        87 almvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~qrdv~yeeak~faeengl~fle~saktg~nvedafl  166 (215)
T KOG0097|consen   87 ALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLMFLEASAKTGQNVEDAFL  166 (215)
T ss_pred             eeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhcccCcHHHHHHHHhhcCeEEEEecccccCcHHHHHH
Confidence            99999999999999999999998888889999999999999999999999999999999999999999999999999987


Q ss_pred             HHHhhc
Q 030364          166 EIGDCT  171 (178)
Q Consensus       166 ~l~~~i  171 (178)
                      .-.++|
T Consensus       167 e~akki  172 (215)
T KOG0097|consen  167 ETAKKI  172 (215)
T ss_pred             HHHHHH
Confidence            655544

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=100.00  E-value=2e-30  Score=177.12  Aligned_cols=149  Identities=20%  Similarity=0.380  Sum_probs=127.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeC-----CeEEEEEEEeCCCchhhhccchhhhcCCcE
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLN-----EVTIKFDIWDTAGQERYHSLAPMYYRGAAA   85 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~   85 (178)
                      +||+++|.+++|||||++++.++.+.+.+.+|.+.+...+.+.++     +..+.+.+||++|++.|..++..+++++|+
T Consensus         1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~   80 (202)
T cd04102           1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG   80 (202)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence            589999999999999999999999988888998877777766663     567899999999999999999999999999


Q ss_pred             EEEEEECCCHhHHHHHHHHHHHHHHhC-------------------CCCceEEEEEeCCCCccccccCHH----HHHHHH
Q 030364           86 AVVVYDITSMDSFERAKKWVQELQRQG-------------------NPNLIMFLVANKVDLEEKRKVKNE----EGELYA  142 (178)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-------------------~~~~~~ivv~nK~D~~~~~~~~~~----~~~~~~  142 (178)
                      +|+|||+++++|++++..|+..+....                   .++.|++||+||+|+.+.+.+..+    ....++
T Consensus        81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia  160 (202)
T cd04102          81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGFVA  160 (202)
T ss_pred             EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhHhhhHH
Confidence            999999999999999999999987631                   247899999999999766555444    245678


Q ss_pred             HHcCCeEEEEeCCCCCC
Q 030364          143 QENGLSFLETSAKSAHN  159 (178)
Q Consensus       143 ~~~~~~~~~~Sa~~~~~  159 (178)
                      ++.+++.++.++.++..
T Consensus       161 ~~~~~~~i~~~c~~~~~  177 (202)
T cd04102         161 EQGNAEEINLNCTNGRL  177 (202)
T ss_pred             HhcCCceEEEecCCccc
Confidence            88999999999876543

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>cd01893 Miro1 Miro1 subfamily

Probab=99.98  E-value=2.4e-30  Score=172.86  Aligned_cols=160  Identities=28%  Similarity=0.390  Sum_probs=123.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEEE
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY   90 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~   90 (178)
                      +||+++|.+|+|||||++++..+.+...+.++. ... .....+.+..+.+.+||+||...+...+..++..+|++++||
T Consensus         1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~   78 (166)
T cd01893           1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVL-PEI-TIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVY   78 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcc-cce-EeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEE
Confidence            489999999999999999999998866533322 222 233455667789999999999888777777889999999999


Q ss_pred             ECCCHhHHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCccccccC--HHHHHHHHHHc-C-CeEEEEeCCCCCCHHHHHH
Q 030364           91 DITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEEKRKVK--NEEGELYAQEN-G-LSFLETSAKSAHNVNELFY  165 (178)
Q Consensus        91 d~~~~~s~~~~~-~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~--~~~~~~~~~~~-~-~~~~~~Sa~~~~~i~~~~~  165 (178)
                      |++++++++.+. .|+..+.... ++.|+++|+||+|+.+.....  .+....+.... + .+++++||++|.|++++|+
T Consensus        79 d~~~~~s~~~~~~~~~~~i~~~~-~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~  157 (166)
T cd01893          79 SVDRPSTLERIRTKWLPLIRRLG-VKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFY  157 (166)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHH
Confidence            999999999975 5767776653 589999999999997654421  22223333333 2 3899999999999999999


Q ss_pred             HHHhhccc
Q 030364          166 EIGDCTEC  173 (178)
Q Consensus       166 ~l~~~i~~  173 (178)
                      .+.+.+.+
T Consensus       158 ~~~~~~~~  165 (166)
T cd01893         158 YAQKAVLH  165 (166)
T ss_pred             HHHHHhcC
Confidence            99887654

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04157 Arl6 Arl6 subfamily

Probab=99.97  E-value=1.3e-30  Score=173.36  Aligned_cols=153  Identities=16%  Similarity=0.244  Sum_probs=118.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCcC-CCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEEE
Q 030364           12 KLVLLGDMGTGKTSLVLRFVKGQF-FDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY   90 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~   90 (178)
                      +|+++|++|||||||++++.++.+ ...+.++.+.....  ..  ...+.+.+||+||+..+...+..+++.+|++++|+
T Consensus         1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~--~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~   76 (162)
T cd04157           1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVES--FE--KGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVI   76 (162)
T ss_pred             CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEE--EE--ECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEE
Confidence            589999999999999999998753 45566776644322  22  33578889999999999999999999999999999


Q ss_pred             ECCCHhHHHHHHHHHHHHHHhC---CCCceEEEEEeCCCCccccccCHHHHHHHHH-----HcCCeEEEEeCCCCCCHHH
Q 030364           91 DITSMDSFERAKKWVQELQRQG---NPNLIMFLVANKVDLEEKRKVKNEEGELYAQ-----ENGLSFLETSAKSAHNVNE  162 (178)
Q Consensus        91 d~~~~~s~~~~~~~~~~~~~~~---~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~  162 (178)
                      |++++.++..+..|+..+....   ..+.|+++|+||+|+.+...  ..+......     ...++++++||++|.|+++
T Consensus        77 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~--~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~  154 (162)
T cd04157          77 DSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALT--AVKITQLLGLENIKDKPWHIFASNALTGEGLDE  154 (162)
T ss_pred             eCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCC--HHHHHHHhCCccccCceEEEEEeeCCCCCchHH
Confidence            9999999988888887775532   25799999999999865322  222221111     1234689999999999999


Q ss_pred             HHHHHHhh
Q 030364          163 LFYEIGDC  170 (178)
Q Consensus       163 ~~~~l~~~  170 (178)
                      +|+||.++
T Consensus       155 ~~~~l~~~  162 (162)
T cd04157         155 GVQWLQAQ  162 (162)
T ss_pred             HHHHHhcC
Confidence            99999753

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=99.97  E-value=4.8e-30  Score=172.58  Aligned_cols=154  Identities=23%  Similarity=0.360  Sum_probs=120.9

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEE
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVV   88 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~   88 (178)
                      +.++|+++|++|+|||||++++..+.+.. +.++.+.++.  ....+  .+.+.+||+||++.+...+..+++.+|++++
T Consensus        14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~--~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~   88 (174)
T cd04153          14 KEYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVE--EIVYK--NIRFLMWDIGGQESLRSSWNTYYTNTDAVIL   88 (174)
T ss_pred             CccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceE--EEEEC--CeEEEEEECCCCHHHHHHHHHHhhcCCEEEE
Confidence            46899999999999999999999887765 4566554442  23333  4778899999999999999999999999999


Q ss_pred             EEECCCHhHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCccccccCHHH-HHHHH----HHcCCeEEEEeCCCCCCHHH
Q 030364           89 VYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEE-GELYA----QENGLSFLETSAKSAHNVNE  162 (178)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~-~~~~~----~~~~~~~~~~Sa~~~~~i~~  162 (178)
                      |+|+++++++.....++..+.... ..+.|+++++||+|+.+..  ..++ ...+.    +..+++++++||++|.|+++
T Consensus        89 V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~--~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e  166 (174)
T cd04153          89 VIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAM--TPAEISESLGLTSIRDHTWHIQGCCALTGEGLPE  166 (174)
T ss_pred             EEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCC--CHHHHHHHhCcccccCCceEEEecccCCCCCHHH
Confidence            999999999988877777665432 3578999999999986522  2222 22221    23456899999999999999


Q ss_pred             HHHHHHh
Q 030364          163 LFYEIGD  169 (178)
Q Consensus       163 ~~~~l~~  169 (178)
                      +|++|.+
T Consensus       167 ~~~~l~~  173 (174)
T cd04153         167 GLDWIAS  173 (174)
T ss_pred             HHHHHhc
Confidence            9999976

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=99.97  E-value=2.1e-30  Score=173.17  Aligned_cols=153  Identities=22%  Similarity=0.195  Sum_probs=120.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEEEE
Q 030364           12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYD   91 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d   91 (178)
                      +|+++|++|||||||++++.++ +...+.++.+...  ..+..+  .+.+.+||+||+..+...+..+++.+|++++|||
T Consensus         1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~~--~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D   75 (167)
T cd04161           1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFTP--TKLRLD--KYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVD   75 (167)
T ss_pred             CEEEECCCCCCHHHHHHHHhCC-CCccccCcccceE--EEEEEC--CEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEE
Confidence            4899999999999999999876 6566777776543  333343  4778899999999999999999999999999999


Q ss_pred             CCCHhHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCccccccCHHH----HHHHHHHc--CCeEEEEeCCCC------C
Q 030364           92 ITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEE----GELYAQEN--GLSFLETSAKSA------H  158 (178)
Q Consensus        92 ~~~~~s~~~~~~~~~~~~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~----~~~~~~~~--~~~~~~~Sa~~~------~  158 (178)
                      ++++.+++.+..|+..+.... ..+.|+++|+||+|+++........    ...+++..  .+.+++|||++|      .
T Consensus        76 ~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~  155 (167)
T cd04161          76 SSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDP  155 (167)
T ss_pred             CCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCcccc
Confidence            999999999999988887643 3689999999999997654221111    12223222  357888999998      8


Q ss_pred             CHHHHHHHHHh
Q 030364          159 NVNELFYEIGD  169 (178)
Q Consensus       159 ~i~~~~~~l~~  169 (178)
                      |+++.|+||.+
T Consensus       156 g~~~~~~wl~~  166 (167)
T cd04161         156 SIVEGLRWLLA  166 (167)
T ss_pred             CHHHHHHHHhc
Confidence            99999999975

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.97  E-value=3.5e-30  Score=173.14  Aligned_cols=159  Identities=27%  Similarity=0.420  Sum_probs=126.1

Q ss_pred             CCCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcE
Q 030364            6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAA   85 (178)
Q Consensus         6 ~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~   85 (178)
                      ..++.+||+++|+.||||||+++++..+.... ..||.+..  ...+.+++  +.+.+||.+|+..++..|..++..+|+
T Consensus        10 ~~~~~~~ililGl~~sGKTtll~~l~~~~~~~-~~pT~g~~--~~~i~~~~--~~~~~~d~gG~~~~~~~w~~y~~~~~~   84 (175)
T PF00025_consen   10 SKKKEIKILILGLDGSGKTTLLNRLKNGEISE-TIPTIGFN--IEEIKYKG--YSLTIWDLGGQESFRPLWKSYFQNADG   84 (175)
T ss_dssp             TTTSEEEEEEEESTTSSHHHHHHHHHSSSEEE-EEEESSEE--EEEEEETT--EEEEEEEESSSGGGGGGGGGGHTTESE
T ss_pred             ccCcEEEEEEECCCccchHHHHHHhhhccccc-cCcccccc--cceeeeCc--EEEEEEeccccccccccceeeccccce
Confidence            44779999999999999999999998765443 55555544  34455555  667899999999999999999999999


Q ss_pred             EEEEEECCCHhHHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCccccccCHHHHHHHHH------HcCCeEEEEeCCCCC
Q 030364           86 AVVVYDITSMDSFERAKKWVQELQRQ-GNPNLIMFLVANKVDLEEKRKVKNEEGELYAQ------ENGLSFLETSAKSAH  158 (178)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~  158 (178)
                      +|||+|.++.+.+.+....+..+... ...+.|+++++||+|++++.  ..++......      ...+.++.|||.+|+
T Consensus        85 iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~--~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~  162 (175)
T PF00025_consen   85 IIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAM--SEEEIKEYLGLEKLKNKRPWSVFSCSAKTGE  162 (175)
T ss_dssp             EEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSS--THHHHHHHTTGGGTTSSSCEEEEEEBTTTTB
T ss_pred             eEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcc--hhhHHHhhhhhhhcccCCceEEEeeeccCCc
Confidence            99999999998888888777776653 34689999999999987643  2333332221      234578999999999


Q ss_pred             CHHHHHHHHHhhc
Q 030364          159 NVNELFYEIGDCT  171 (178)
Q Consensus       159 ~i~~~~~~l~~~i  171 (178)
                      |+.+.++||.++|
T Consensus       163 Gv~e~l~WL~~~~  175 (175)
T PF00025_consen  163 GVDEGLEWLIEQI  175 (175)
T ss_dssp             THHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhcC
Confidence            9999999999875

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=99.97  E-value=3.9e-30  Score=170.80  Aligned_cols=152  Identities=22%  Similarity=0.378  Sum_probs=118.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEEEE
Q 030364           12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYD   91 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d   91 (178)
                      +|+++|++|+|||||++++.++.+.. ..++.+.+.  ..+... ..+.+.+||+||+..+...+..++..+|++++|+|
T Consensus         1 ~i~i~G~~~~GKTsl~~~~~~~~~~~-~~~t~~~~~--~~~~~~-~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D   76 (160)
T cd04156           1 QVLLLGLDSAGKSTLLYKLKHAELVT-TIPTVGFNV--EMLQLE-KHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVD   76 (160)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCccc-ccCccCcce--EEEEeC-CceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence            58999999999999999999888754 355555433  233333 35789999999999998889999999999999999


Q ss_pred             CCCHhHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCccccccCHHHHH------HHHHHcCCeEEEEeCCCCCCHHHHH
Q 030364           92 ITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGE------LYAQENGLSFLETSAKSAHNVNELF  164 (178)
Q Consensus        92 ~~~~~s~~~~~~~~~~~~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~------~~~~~~~~~~~~~Sa~~~~~i~~~~  164 (178)
                      .+++.++.....++..+.... ..+.|+++|+||+|+.....  ..+..      .++...++++++|||++|+|++++|
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~  154 (160)
T cd04156          77 SSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALT--AEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAF  154 (160)
T ss_pred             CCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcC--HHHHHHHcCCcccCCCCcEEEEecccccCCChHHHH
Confidence            999999999888887776532 36899999999999864221  12221      1222234579999999999999999


Q ss_pred             HHHHh
Q 030364          165 YEIGD  169 (178)
Q Consensus       165 ~~l~~  169 (178)
                      ++|.+
T Consensus       155 ~~i~~  159 (160)
T cd04156         155 RKLAS  159 (160)
T ss_pred             HHHhc
Confidence            99865

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=99.97  E-value=1e-29  Score=161.39  Aligned_cols=165  Identities=22%  Similarity=0.280  Sum_probs=131.6

Q ss_pred             cCCCCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCC
Q 030364            4 TSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGA   83 (178)
Q Consensus         4 ~~~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~   83 (178)
                      ...+.++++|+++|..||||||++++|.+.. .+...|+.+.+...  ..++  .+++++||.+|+...+..|.+||.++
T Consensus        10 ~k~kerE~riLiLGLdNsGKTti~~kl~~~~-~~~i~pt~gf~Ikt--l~~~--~~~L~iwDvGGq~~lr~~W~nYfest   84 (185)
T KOG0073|consen   10 QKLKEREVRILILGLDNSGKTTIVKKLLGED-TDTISPTLGFQIKT--LEYK--GYTLNIWDVGGQKTLRSYWKNYFEST   84 (185)
T ss_pred             HHhhhheeEEEEEecCCCCchhHHHHhcCCC-ccccCCccceeeEE--EEec--ceEEEEEEcCCcchhHHHHHHhhhcc
Confidence            3445679999999999999999999998655 44466777655433  3333  47888999999999999999999999


Q ss_pred             cEEEEEEECCCHhHHHHHHHHHHHHHH-hCCCCceEEEEEeCCCCccccccCHH----HHHHHHHHcCCeEEEEeCCCCC
Q 030364           84 AAAVVVYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNE----EGELYAQENGLSFLETSAKSAH  158 (178)
Q Consensus        84 d~~i~v~d~~~~~s~~~~~~~~~~~~~-~~~~~~~~ivv~nK~D~~~~~~~~~~----~~~~~~~~~~~~~~~~Sa~~~~  158 (178)
                      |++|+|+|.+|+..++.....+..+.. ....+.|++|++||.|++.+-.....    ....+++...++++.|||.+|+
T Consensus        85 dglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge  164 (185)
T KOG0073|consen   85 DGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCSAVTGE  164 (185)
T ss_pred             CeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEEEEeccccc
Confidence            999999999999999988777766544 33467899999999999753322111    2234456678999999999999


Q ss_pred             CHHHHHHHHHhhccc
Q 030364          159 NVNELFYEIGDCTEC  173 (178)
Q Consensus       159 ~i~~~~~~l~~~i~~  173 (178)
                      ++.+.++||+..+.+
T Consensus       165 ~l~~gidWL~~~l~~  179 (185)
T KOG0073|consen  165 DLLEGIDWLCDDLMS  179 (185)
T ss_pred             cHHHHHHHHHHHHHH
Confidence            999999999998876

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.97  E-value=2.8e-29  Score=167.74  Aligned_cols=153  Identities=24%  Similarity=0.296  Sum_probs=116.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCcC------CCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcE
Q 030364           12 KLVLLGDMGTGKTSLVLRFVKGQF------FDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAA   85 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~   85 (178)
                      +|+++|++|+|||||++++.+...      ...+.++.+...  ..+.++  ...+.+||+||++.+...+..++..+|+
T Consensus         1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~   76 (167)
T cd04160           1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNI--GTIEVG--NARLKFWDLGGQESLRSLWDKYYAECHA   76 (167)
T ss_pred             CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccce--EEEEEC--CEEEEEEECCCChhhHHHHHHHhCCCCE
Confidence            689999999999999999986432      222334443333  233444  4678899999999999999999999999


Q ss_pred             EEEEEECCCHhHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCccccccCHHHHHHHHHH-------cCCeEEEEeCCCC
Q 030364           86 AVVVYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQE-------NGLSFLETSAKSA  157 (178)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~-------~~~~~~~~Sa~~~  157 (178)
                      +++|+|+++++++.....++..+.+.. ..+.|+++++||+|+....  ...+...+...       .+++++++||++|
T Consensus        77 ~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  154 (167)
T cd04160          77 IIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDAL--SVEEIKEVFQDKAEEIGRRDCLVLPVSALEG  154 (167)
T ss_pred             EEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCC--CHHHHHHHhccccccccCCceEEEEeeCCCC
Confidence            999999999988988888887766532 4689999999999986532  22333333222       3468999999999


Q ss_pred             CCHHHHHHHHHhh
Q 030364          158 HNVNELFYEIGDC  170 (178)
Q Consensus       158 ~~i~~~~~~l~~~  170 (178)
                      .|++++++||.++
T Consensus       155 ~gv~e~~~~l~~~  167 (167)
T cd04160         155 TGVREGIEWLVER  167 (167)
T ss_pred             cCHHHHHHHHhcC
Confidence            9999999999763

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>cd00879 Sar1 Sar1 subfamily

Probab=99.97  E-value=3.4e-29  Score=170.72  Aligned_cols=157  Identities=22%  Similarity=0.313  Sum_probs=124.1

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEE
Q 030364            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (178)
Q Consensus         8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i   87 (178)
                      .+..+|+++|++|||||||++++.++.+. .+.++.+..  ...+.+++  +.+.+||+||+..+...+..+++.+|+++
T Consensus        17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~--~~~i~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~ii   91 (190)
T cd00879          17 NKEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPT--SEELTIGN--IKFKTFDLGGHEQARRLWKDYFPEVDGIV   91 (190)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcc--eEEEEECC--EEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence            45789999999999999999999987764 355555433  23344444  57789999999998888889999999999


Q ss_pred             EEEECCCHhHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCccccccCHHHHHHHHHH----------------cCCeEE
Q 030364           88 VVYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQE----------------NGLSFL  150 (178)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~----------------~~~~~~  150 (178)
                      +|+|.++.+++.....++..+.... ..+.|+++++||+|+..  .+..++.......                ..++++
T Consensus        92 lV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (190)
T cd00879          92 FLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPG--AVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVF  169 (190)
T ss_pred             EEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCC--CcCHHHHHHHhCcccccccccccccccCceeEEEE
Confidence            9999999999988888877776533 36799999999999864  3444555554432                225799


Q ss_pred             EEeCCCCCCHHHHHHHHHhhc
Q 030364          151 ETSAKSAHNVNELFYEIGDCT  171 (178)
Q Consensus       151 ~~Sa~~~~~i~~~~~~l~~~i  171 (178)
                      +|||++|.|++++|+||.+.+
T Consensus       170 ~~Sa~~~~gv~e~~~~l~~~~  190 (190)
T cd00879         170 MCSVVKRQGYGEAFRWLSQYL  190 (190)
T ss_pred             EeEecCCCChHHHHHHHHhhC
Confidence            999999999999999998754

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>cd04151 Arl1 Arl1 subfamily

Probab=99.97  E-value=6.7e-30  Score=169.38  Aligned_cols=151  Identities=23%  Similarity=0.355  Sum_probs=114.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEEEE
Q 030364           12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYD   91 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d   91 (178)
                      ||+++|++++|||||++++..+.+.. ..++.+.+..  .+..  ..+.+++||+||+..+...+..++..+|++++|+|
T Consensus         1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d   75 (158)
T cd04151           1 RILILGLDNAGKTTILYRLQLGEVVT-TIPTIGFNVE--TVTY--KNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVD   75 (158)
T ss_pred             CEEEECCCCCCHHHHHHHHccCCCcC-cCCccCcCeE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEE
Confidence            68999999999999999998777653 4455444332  2223  34788999999999999999999999999999999


Q ss_pred             CCCHhHHHHHHHHHHHHHH-hCCCCceEEEEEeCCCCccccccCHHHHH-HHH----HHcCCeEEEEeCCCCCCHHHHHH
Q 030364           92 ITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGE-LYA----QENGLSFLETSAKSAHNVNELFY  165 (178)
Q Consensus        92 ~~~~~s~~~~~~~~~~~~~-~~~~~~~~ivv~nK~D~~~~~~~~~~~~~-~~~----~~~~~~~~~~Sa~~~~~i~~~~~  165 (178)
                      ++++.++.....++..+.+ ....+.|+++++||+|+.+...  ..+.. .+.    ...+.+++++||++|.|++++|+
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  153 (158)
T cd04151          76 STDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALS--EAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMD  153 (158)
T ss_pred             CCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCC--HHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHH
Confidence            9998888776666655433 3346799999999999865331  12221 111    11235799999999999999999


Q ss_pred             HHHh
Q 030364          166 EIGD  169 (178)
Q Consensus       166 ~l~~  169 (178)
                      +|.+
T Consensus       154 ~l~~  157 (158)
T cd04151         154 WLVN  157 (158)
T ss_pred             HHhc
Confidence            9975

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]

Probab=99.97  E-value=4e-30  Score=171.13  Aligned_cols=164  Identities=30%  Similarity=0.532  Sum_probs=145.7

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEe-CCeEEEEEEEeCCCchhhhccchhhhcCCcEE
Q 030364            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSL-NEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA   86 (178)
Q Consensus         8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~   86 (178)
                      ...+|++|+|..++|||+|+-.+..+.|++.+.||....+ ...+.+ ++..+.+.+|||.|+++|+.+++..+..+|++
T Consensus         2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdny-s~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvf   80 (198)
T KOG0393|consen    2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNY-SANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVF   80 (198)
T ss_pred             ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccc-eEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEE
Confidence            3578999999999999999999999999999999999544 555677 59999999999999999999999999999999


Q ss_pred             EEEEECCCHhHHHHH-HHHHHHHHHhCCCCceEEEEEeCCCCcc------------ccccCHHHHHHHHHHcC-CeEEEE
Q 030364           87 VVVYDITSMDSFERA-KKWVQELQRQGNPNLIMFLVANKVDLEE------------KRKVKNEEGELYAQENG-LSFLET  152 (178)
Q Consensus        87 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~-~~~~~~  152 (178)
                      ++||++.+++|++++ ..|+.++..+ .++.|+++||+|.|+..            ...+..+++..++++.| ..|++|
T Consensus        81 l~cfsv~~p~S~~nv~~kW~pEi~~~-cp~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~Ec  159 (198)
T KOG0393|consen   81 LLCFSVVSPESFENVKSKWIPEIKHH-CPNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLEC  159 (198)
T ss_pred             EEEEEcCChhhHHHHHhhhhHHHHhh-CCCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeee
Confidence            999999999999996 5888888877 58999999999999863            23677788999999999 589999


Q ss_pred             eCCCCCCHHHHHHHHHhhccc
Q 030364          153 SAKSAHNVNELFYEIGDCTEC  173 (178)
Q Consensus       153 Sa~~~~~i~~~~~~l~~~i~~  173 (178)
                      ||++..|++++|+..++....
T Consensus       160 Sa~tq~~v~~vF~~a~~~~l~  180 (198)
T KOG0393|consen  160 SALTQKGVKEVFDEAIRAALR  180 (198)
T ss_pred             hhhhhCCcHHHHHHHHHHHhc
Confidence            999999999999988876644

>PTZ00099 rab6; Provisional

Probab=99.97  E-value=1.2e-28  Score=165.52  Aligned_cols=141  Identities=45%  Similarity=0.692  Sum_probs=128.1

Q ss_pred             CcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhC
Q 030364           33 GQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQG  112 (178)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~  112 (178)
                      +.|.+.+.+|.+.++....+.+++..+++.|||++|++.+...+..+++++|++|+|||++++++|+.+..|+..+....
T Consensus         3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~   82 (176)
T PTZ00099          3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER   82 (176)
T ss_pred             CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence            45677789999999988888899999999999999999999999999999999999999999999999999999887765


Q ss_pred             CCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHhhccc
Q 030364          113 NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIGDCTEC  173 (178)
Q Consensus       113 ~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~~  173 (178)
                      .++.|+++|+||+|+...+.+..+++..++..+++.++++||++|.|++++|++|++.+..
T Consensus        83 ~~~~piilVgNK~DL~~~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~  143 (176)
T PTZ00099         83 GKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPN  143 (176)
T ss_pred             CCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            5688999999999998767778888888888889999999999999999999999988754

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=99.97  E-value=2e-29  Score=167.08  Aligned_cols=151  Identities=22%  Similarity=0.318  Sum_probs=119.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEEEE
Q 030364           12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYD   91 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d   91 (178)
                      ||+++|.+|+|||||++++.++.. ..+.++.+....  .+.+.  .+.+.+||+||+..+...+..++..+|++++|||
T Consensus         1 ki~iiG~~~~GKssli~~~~~~~~-~~~~~t~~~~~~--~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D   75 (158)
T cd00878           1 RILILGLDGAGKTTILYKLKLGEV-VTTIPTIGFNVE--TVEYK--NVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVD   75 (158)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCcCcceE--EEEEC--CEEEEEEECCCChhhHHHHHHHhccCCEEEEEEE
Confidence            689999999999999999998874 335555554432  23333  4678899999999999999999999999999999


Q ss_pred             CCCHhHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCccccccCHHHHHHHHH-----HcCCeEEEEeCCCCCCHHHHHH
Q 030364           92 ITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQ-----ENGLSFLETSAKSAHNVNELFY  165 (178)
Q Consensus        92 ~~~~~s~~~~~~~~~~~~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~~~~  165 (178)
                      +++++++.....++..+.... ..+.|+++++||+|+....  ..++......     ...++++++||++|.|++++|+
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~  153 (158)
T cd00878          76 SSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGAL--SVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLD  153 (158)
T ss_pred             CCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcccc--CHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHH
Confidence            999999999888887776533 4689999999999986543  2222222222     2346899999999999999999


Q ss_pred             HHHh
Q 030364          166 EIGD  169 (178)
Q Consensus       166 ~l~~  169 (178)
                      +|..
T Consensus       154 ~l~~  157 (158)
T cd00878         154 WLLQ  157 (158)
T ss_pred             HHhh
Confidence            9875

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=99.97  E-value=5.8e-29  Score=168.65  Aligned_cols=158  Identities=19%  Similarity=0.249  Sum_probs=121.2

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEE
Q 030364            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA   86 (178)
Q Consensus         7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~   86 (178)
                      .++.++|+++|.+|+|||||++++.++.+.. +.++.+.+.  ..+..+  .+.+.+||+||+..+...+..++..+|++
T Consensus        14 ~~~~~~i~ivG~~~~GKTsli~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~ad~i   88 (184)
T smart00178       14 WNKHAKILFLGLDNAGKTTLLHMLKNDRLAQ-HQPTQHPTS--EELAIG--NIKFTTFDLGGHQQARRLWKDYFPEVNGI   88 (184)
T ss_pred             ccccCEEEEECCCCCCHHHHHHHHhcCCCcc-cCCccccce--EEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEE
Confidence            3567999999999999999999999876543 344443322  223333  36788999999999999999999999999


Q ss_pred             EEEEECCCHhHHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCccccccCHHHHHHHHHH------------cCCeEEEEe
Q 030364           87 VVVYDITSMDSFERAKKWVQELQRQ-GNPNLIMFLVANKVDLEEKRKVKNEEGELYAQE------------NGLSFLETS  153 (178)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~------------~~~~~~~~S  153 (178)
                      ++|+|+++++++.....++..+... ...+.|+++|+||+|++.  .+..++.......            ....+++||
T Consensus        89 i~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~--~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~S  166 (184)
T smart00178       89 VYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPY--AASEDELRYALGLTNTTGSKGKVGVRPLEVFMCS  166 (184)
T ss_pred             EEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccC--CCCHHHHHHHcCCCcccccccccCCceeEEEEee
Confidence            9999999999998888777776543 236789999999999864  2333333322210            234699999


Q ss_pred             CCCCCCHHHHHHHHHhhc
Q 030364          154 AKSAHNVNELFYEIGDCT  171 (178)
Q Consensus       154 a~~~~~i~~~~~~l~~~i  171 (178)
                      |++|.|++++++||.+++
T Consensus       167 a~~~~g~~~~~~wl~~~~  184 (184)
T smart00178      167 VVRRMGYGEGFKWLSQYI  184 (184)
T ss_pred             cccCCChHHHHHHHHhhC
Confidence            999999999999998753

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>PLN00023 GTP-binding protein; Provisional

Probab=99.96  E-value=2.6e-28  Score=174.46  Aligned_cols=141  Identities=26%  Similarity=0.470  Sum_probs=121.9

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeC-------------CeEEEEEEEeCCCchhhh
Q 030364            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLN-------------EVTIKFDIWDTAGQERYH   73 (178)
Q Consensus         7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~i~d~~g~~~~~   73 (178)
                      +...+||+++|..|||||||++++.++.+...+.++.+.++..+.+.++             +..+.++|||++|++.|.
T Consensus        18 ~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfr   97 (334)
T PLN00023         18 PCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYK   97 (334)
T ss_pred             CccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhh
Confidence            3458999999999999999999999999988888999888776766654             256889999999999999


Q ss_pred             ccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCC------------CCceEEEEEeCCCCcccc---c---cCH
Q 030364           74 SLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGN------------PNLIMFLVANKVDLEEKR---K---VKN  135 (178)
Q Consensus        74 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~------------~~~~~ivv~nK~D~~~~~---~---~~~  135 (178)
                      .++..+++++|++|+|||++++++++++..|+..+.....            .+.|++||+||+|+...+   .   +..
T Consensus        98 sL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~~~~  177 (334)
T PLN00023         98 DCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGNLV  177 (334)
T ss_pred             hhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccccccccccccccH
Confidence            9999999999999999999999999999999999987531            258999999999996542   2   357


Q ss_pred             HHHHHHHHHcCC
Q 030364          136 EEGELYAQENGL  147 (178)
Q Consensus       136 ~~~~~~~~~~~~  147 (178)
                      +++..|++.+++
T Consensus       178 e~a~~~A~~~g~  189 (334)
T PLN00023        178 DAARQWVEKQGL  189 (334)
T ss_pred             HHHHHHHHHcCC
Confidence            889999998874

>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=6.4e-29  Score=161.54  Aligned_cols=164  Identities=20%  Similarity=0.303  Sum_probs=132.6

Q ss_pred             CCCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcE
Q 030364            6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAA   85 (178)
Q Consensus         6 ~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~   85 (178)
                      ...++++|+++|..++||||++++|..+++... .||.+..+.  .+.+.  ++.|++||.+|++.++..|..|+.+.++
T Consensus        13 ~~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnVE--~v~yk--n~~f~vWDvGGq~k~R~lW~~Y~~~t~~   87 (181)
T KOG0070|consen   13 FGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNVE--TVEYK--NISFTVWDVGGQEKLRPLWKHYFQNTQG   87 (181)
T ss_pred             cCcceEEEEEEeccCCCceeeeEeeccCCcccC-CCcccccee--EEEEc--ceEEEEEecCCCcccccchhhhccCCcE
Confidence            356799999999999999999999998888764 777765543  33444  5888999999999999999999999999


Q ss_pred             EEEEEECCCHhHHHHHHHHHHHHHHhCC-CCceEEEEEeCCCCccccccCH---HHHHHHHHHcCCeEEEEeCCCCCCHH
Q 030364           86 AVVVYDITSMDSFERAKKWVQELQRQGN-PNLIMFLVANKVDLEEKRKVKN---EEGELYAQENGLSFLETSAKSAHNVN  161 (178)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~ivv~nK~D~~~~~~~~~---~~~~~~~~~~~~~~~~~Sa~~~~~i~  161 (178)
                      +|||+|.+|++-+...+..+..+..+.. ...|+++.+||.|++++-...+   .....-.....+.+-.|+|.+|+|+.
T Consensus        88 lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~~~w~iq~~~a~~G~GL~  167 (181)
T KOG0070|consen   88 LIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRSRNWHIQSTCAISGEGLY  167 (181)
T ss_pred             EEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhhhhccCCCCcEEeeccccccccHH
Confidence            9999999999999998888777776653 7899999999999987544221   11111122245678899999999999


Q ss_pred             HHHHHHHhhcccc
Q 030364          162 ELFYEIGDCTECF  174 (178)
Q Consensus       162 ~~~~~l~~~i~~~  174 (178)
                      +.++||.+.+...
T Consensus       168 egl~wl~~~~~~~  180 (181)
T KOG0070|consen  168 EGLDWLSNNLKKR  180 (181)
T ss_pred             HHHHHHHHHHhcc
Confidence            9999999988754

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.96  E-value=9.5e-28  Score=158.68  Aligned_cols=151  Identities=26%  Similarity=0.367  Sum_probs=119.7

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEEEEC
Q 030364           13 LVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDI   92 (178)
Q Consensus        13 i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~   92 (178)
                      |+++|++|+|||||++++.+.++...+.++.+.....  ...++  +.+.+||+||+..+...+..++..+|++++|+|+
T Consensus         2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~--~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~   77 (159)
T cd04159           2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRK--VTKGN--VTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDA   77 (159)
T ss_pred             EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEE--EEECC--EEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEEC
Confidence            7899999999999999999998888777777655432  23333  7889999999999999999999999999999999


Q ss_pred             CCHhHHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCccccccCHHHHHHHH-----HHcCCeEEEEeCCCCCCHHHHHHH
Q 030364           93 TSMDSFERAKKWVQELQRQ-GNPNLIMFLVANKVDLEEKRKVKNEEGELYA-----QENGLSFLETSAKSAHNVNELFYE  166 (178)
Q Consensus        93 ~~~~s~~~~~~~~~~~~~~-~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~~~~~  166 (178)
                      ++.+++.....++..+... ...+.|+++|+||+|+.+....  .+.....     ....++++++|+++|.|+++++++
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  155 (159)
T cd04159          78 ADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSV--DELIEQMNLKSITDREVSCYSISCKEKTNIDIVLDW  155 (159)
T ss_pred             CCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCH--HHHHHHhCcccccCCceEEEEEEeccCCChHHHHHH
Confidence            9999988887777766543 2367899999999998654322  1111111     123468999999999999999999


Q ss_pred             HHh
Q 030364          167 IGD  169 (178)
Q Consensus       167 l~~  169 (178)
                      |.+
T Consensus       156 l~~  158 (159)
T cd04159         156 LIK  158 (159)
T ss_pred             Hhh
Confidence            975

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>cd04155 Arl3 Arl3 subfamily

Probab=99.96  E-value=2.4e-27  Score=159.33  Aligned_cols=156  Identities=19%  Similarity=0.275  Sum_probs=118.1

Q ss_pred             CCCCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCc
Q 030364            5 SNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAA   84 (178)
Q Consensus         5 ~~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d   84 (178)
                      ......++|+++|++|+|||||++++.+..+.. +.++.+.+.  ..+..++  ..+.+||+||+..+...+..+++.+|
T Consensus         9 ~~~~~~~~v~i~G~~g~GKStLl~~l~~~~~~~-~~~t~g~~~--~~i~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~   83 (173)
T cd04155           9 RKSSEEPRILILGLDNAGKTTILKQLASEDISH-ITPTQGFNI--KTVQSDG--FKLNVWDIGGQRAIRPYWRNYFENTD   83 (173)
T ss_pred             hccCCccEEEEEccCCCCHHHHHHHHhcCCCcc-cCCCCCcce--EEEEECC--EEEEEEECCCCHHHHHHHHHHhcCCC
Confidence            344558999999999999999999999876533 455555332  2334444  56789999999888888888899999


Q ss_pred             EEEEEEECCCHhHHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCccccccCHHHHHHHHHHcC--------CeEEEEeCC
Q 030364           85 AAVVVYDITSMDSFERAKKWVQELQRQ-GNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENG--------LSFLETSAK  155 (178)
Q Consensus        85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--------~~~~~~Sa~  155 (178)
                      ++++|+|+++..++.....++..+... ...+.|+++++||+|+.+....  .   .+.+..+        .+++++||+
T Consensus        84 ~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~---~i~~~l~~~~~~~~~~~~~~~Sa~  158 (173)
T cd04155          84 CLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPA--E---EIAEALNLHDLRDRTWHIQACSAK  158 (173)
T ss_pred             EEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCCH--H---HHHHHcCCcccCCCeEEEEEeECC
Confidence            999999999988888877777665543 2357999999999998653321  1   1222222        257899999


Q ss_pred             CCCCHHHHHHHHHhh
Q 030364          156 SAHNVNELFYEIGDC  170 (178)
Q Consensus       156 ~~~~i~~~~~~l~~~  170 (178)
                      +|+|++++|+||+++
T Consensus       159 ~~~gi~~~~~~l~~~  173 (173)
T cd04155         159 TGEGLQEGMNWVCKN  173 (173)
T ss_pred             CCCCHHHHHHHHhcC
Confidence            999999999999763

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>cd01898 Obg Obg subfamily

Probab=99.96  E-value=9.5e-28  Score=160.78  Aligned_cols=158  Identities=18%  Similarity=0.160  Sum_probs=110.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchh----hhccchhh---hcCCc
Q 030364           12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER----YHSLAPMY---YRGAA   84 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~----~~~~~~~~---~~~~d   84 (178)
                      +|+++|.+|+|||||+++|.+........+..+.......+.+++ ...+.+||+||...    ...+...+   +..+|
T Consensus         2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d   80 (170)
T cd01898           2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDD-GRSFVVADIPGLIEGASEGKGLGHRFLRHIERTR   80 (170)
T ss_pred             CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCC-CCeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence            689999999999999999987554211111112222222233333 24788999999632    22223333   34699


Q ss_pred             EEEEEEECCCH-hHHHHHHHHHHHHHHhCC--CCceEEEEEeCCCCccccccCHHHHHHHHHH-cCCeEEEEeCCCCCCH
Q 030364           85 AAVVVYDITSM-DSFERAKKWVQELQRQGN--PNLIMFLVANKVDLEEKRKVKNEEGELYAQE-NGLSFLETSAKSAHNV  160 (178)
Q Consensus        85 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i  160 (178)
                      ++++|+|++++ ++++.+..|.+.+.....  .+.|+++|+||+|+....... .....+... .+.+++++||+++.|+
T Consensus        81 ~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~Sa~~~~gi  159 (170)
T cd01898          81 LLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELF-ELLKELLKELWGKPVFPISALTGEGL  159 (170)
T ss_pred             EEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhH-HHHHHHHhhCCCCCEEEEecCCCCCH
Confidence            99999999998 789888888888876532  478999999999986654432 333444444 3789999999999999


Q ss_pred             HHHHHHHHhhc
Q 030364          161 NELFYEIGDCT  171 (178)
Q Consensus       161 ~~~~~~l~~~i  171 (178)
                      +++|++|.+.+
T Consensus       160 ~~l~~~i~~~~  170 (170)
T cd01898         160 DELLRKLAELL  170 (170)
T ss_pred             HHHHHHHHhhC
Confidence            99999998753

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.96  E-value=1.2e-27  Score=159.98  Aligned_cols=156  Identities=19%  Similarity=0.171  Sum_probs=107.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhcc---------chhhhc
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSL---------APMYYR   81 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~---------~~~~~~   81 (178)
                      .+|+++|.+|+|||||+++|.++.+.....+..+.+......  ....+.+.+||+||.......         ......
T Consensus         1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~   78 (168)
T cd01897           1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHF--DYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAH   78 (168)
T ss_pred             CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEE--ccCceEEEEEECCCcCCccccCCchHHHHHHHHHHh
Confidence            379999999999999999999887643222222222222222  223478899999997321110         011122


Q ss_pred             CCcEEEEEEECCCHhH--HHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCC
Q 030364           82 GAAAAVVVYDITSMDS--FERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHN  159 (178)
Q Consensus        82 ~~d~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  159 (178)
                      .+|++++|+|++++.+  ++....|+..+... ..+.|+++|+||+|+.....+..  ...+.+..+++++++||++|.|
T Consensus        79 ~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~-~~~~pvilv~NK~Dl~~~~~~~~--~~~~~~~~~~~~~~~Sa~~~~g  155 (168)
T cd01897          79 LRAAVLFLFDPSETCGYSLEEQLSLFEEIKPL-FKNKPVIVVLNKIDLLTFEDLSE--IEEEEELEGEEVLKISTLTEEG  155 (168)
T ss_pred             ccCcEEEEEeCCcccccchHHHHHHHHHHHhh-cCcCCeEEEEEccccCchhhHHH--HHHhhhhccCceEEEEecccCC
Confidence            3689999999998754  35556677777554 25789999999999876544332  4455555678999999999999


Q ss_pred             HHHHHHHHHhhc
Q 030364          160 VNELFYEIGDCT  171 (178)
Q Consensus       160 i~~~~~~l~~~i  171 (178)
                      +++++++|.+.+
T Consensus       156 i~~l~~~l~~~~  167 (168)
T cd01897         156 VDEVKNKACELL  167 (168)
T ss_pred             HHHHHHHHHHHh
Confidence            999999998865

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>cd01890 LepA LepA subfamily

Probab=99.96  E-value=2e-27  Score=160.48  Aligned_cols=155  Identities=18%  Similarity=0.221  Sum_probs=113.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCc-------CCCCccC------ceeeeEEEEEE--Ee---CCeEEEEEEEeCCCchhhh
Q 030364           12 KLVLLGDMGTGKTSLVLRFVKGQ-------FFDFQES------TIGAAFFTQVL--SL---NEVTIKFDIWDTAGQERYH   73 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~~~-------~~~~~~~------~~~~~~~~~~~--~~---~~~~~~~~i~d~~g~~~~~   73 (178)
                      +|+++|++++|||||+++|++..       +...+.+      +.+.+......  .+   ++..+.+.+||+||++.+.
T Consensus         2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~   81 (179)
T cd01890           2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS   81 (179)
T ss_pred             cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence            79999999999999999998742       1111222      11223322222  22   5667889999999999999


Q ss_pred             ccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCC---eEE
Q 030364           74 SLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGL---SFL  150 (178)
Q Consensus        74 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~---~~~  150 (178)
                      ..+..++..+|++|+|+|++++.+......|....    ..+.|+++|+||+|+.+..  .......+++.+++   +++
T Consensus        82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~----~~~~~iiiv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~  155 (179)
T cd01890          82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL----ENNLEIIPVINKIDLPSAD--PERVKQQIEDVLGLDPSEAI  155 (179)
T ss_pred             HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH----HcCCCEEEEEECCCCCcCC--HHHHHHHHHHHhCCCcccEE
Confidence            99999999999999999999876665555443322    2467899999999986422  12233455555565   489


Q ss_pred             EEeCCCCCCHHHHHHHHHhhcc
Q 030364          151 ETSAKSAHNVNELFYEIGDCTE  172 (178)
Q Consensus       151 ~~Sa~~~~~i~~~~~~l~~~i~  172 (178)
                      ++||++|.|+++++++|.+.+.
T Consensus       156 ~~Sa~~g~gi~~l~~~l~~~~~  177 (179)
T cd01890         156 LVSAKTGLGVEDLLEAIVERIP  177 (179)
T ss_pred             EeeccCCCCHHHHHHHHHhhCC
Confidence            9999999999999999998764

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.96  E-value=4.3e-30  Score=165.62  Aligned_cols=167  Identities=30%  Similarity=0.496  Sum_probs=156.1

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEE
Q 030364            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (178)
Q Consensus         8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i   87 (178)
                      +.-+|++|+|..++||||++++++.+-|...+..+.+.+....++.+.+..+...+||++|+++|......|++++.+.+
T Consensus        18 e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~v   97 (246)
T KOG4252|consen   18 ERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASV   97 (246)
T ss_pred             hhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccceE
Confidence            35789999999999999999999999999999999999998888888888888999999999999999999999999999


Q ss_pred             EEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Q 030364           88 VVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI  167 (178)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  167 (178)
                      +||+.+|+.||+....|++.+... ...+|.++|-||+|+.+...+...+.+-+++.+.+.++.+|++...|+..+|..|
T Consensus        98 LVFSTTDr~SFea~~~w~~kv~~e-~~~IPtV~vqNKIDlveds~~~~~evE~lak~l~~RlyRtSvked~NV~~vF~YL  176 (246)
T KOG4252|consen   98 LVFSTTDRYSFEATLEWYNKVQKE-TERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHKRLYRTSVKEDFNVMHVFAYL  176 (246)
T ss_pred             EEEecccHHHHHHHHHHHHHHHHH-hccCCeEEeeccchhhHhhhcchHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHH
Confidence            999999999999999999999876 4689999999999999999999999999999999999999999999999999999


Q ss_pred             Hhhccccc
Q 030364          168 GDCTECFS  175 (178)
Q Consensus       168 ~~~i~~~~  175 (178)
                      ++++.+..
T Consensus       177 aeK~~q~~  184 (246)
T KOG4252|consen  177 AEKLTQQK  184 (246)
T ss_pred             HHHHHHHH
Confidence            98776543

>cd01878 HflX HflX subfamily

Probab=99.96  E-value=2.1e-27  Score=163.58  Aligned_cols=157  Identities=21%  Similarity=0.193  Sum_probs=114.5

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchh---------hhccchh
Q 030364            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER---------YHSLAPM   78 (178)
Q Consensus         8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~---------~~~~~~~   78 (178)
                      ++.++|+++|++|||||||++++.+..+.....+..+.+.....+.+++. ..+.+||+||...         +.... .
T Consensus        39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~~-~  116 (204)
T cd01878          39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRSTL-E  116 (204)
T ss_pred             cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHHH-H
Confidence            45689999999999999999999987643322223333333334444443 3678999999732         11111 2


Q ss_pred             hhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCC
Q 030364           79 YYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAH  158 (178)
Q Consensus        79 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  158 (178)
                      .+..+|++++|+|++++.++.....|...+......+.|+++|+||+|+.......     ......+.+++++||+++.
T Consensus       117 ~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~~-----~~~~~~~~~~~~~Sa~~~~  191 (204)
T cd01878         117 EVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEELE-----ERLEAGRPDAVFISAKTGE  191 (204)
T ss_pred             HHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHHH-----HHhhcCCCceEEEEcCCCC
Confidence            35789999999999998888877777777766555678999999999986543221     3344566799999999999


Q ss_pred             CHHHHHHHHHhhc
Q 030364          159 NVNELFYEIGDCT  171 (178)
Q Consensus       159 ~i~~~~~~l~~~i  171 (178)
                      |+++++++|.+.+
T Consensus       192 gi~~l~~~L~~~~  204 (204)
T cd01878         192 GLDELLEAIEELL  204 (204)
T ss_pred             CHHHHHHHHHhhC
Confidence            9999999998764

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.96  E-value=3.3e-27  Score=172.16  Aligned_cols=164  Identities=18%  Similarity=0.131  Sum_probs=119.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhh-------hccchhhhcCC
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERY-------HSLAPMYYRGA   83 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~-------~~~~~~~~~~~   83 (178)
                      ..|.++|.||||||||++++++.+..-...+.++.......+.+.+ ...+.+||+||..+-       ...+...++.+
T Consensus       159 adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~-~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a  237 (335)
T PRK12299        159 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDD-YKSFVIADIPGLIEGASEGAGLGHRFLKHIERT  237 (335)
T ss_pred             CCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCC-CcEEEEEeCCCccCCCCccccHHHHHHHHhhhc
Confidence            3789999999999999999997653321222233333333444422 345789999996321       11223345679


Q ss_pred             cEEEEEEECCCHhHHHHHHHHHHHHHHhCC--CCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHH
Q 030364           84 AAAVVVYDITSMDSFERAKKWVQELQRQGN--PNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVN  161 (178)
Q Consensus        84 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  161 (178)
                      +++++|+|+++.++++.+..|..++..+..  .++|+++|+||+|+........+....+.+..+++++++||++++|++
T Consensus       238 ~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~GI~  317 (335)
T PRK12299        238 RLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVTGEGLD  317 (335)
T ss_pred             CEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCCCCCHH
Confidence            999999999988889999899888877532  478999999999997655444344455555667899999999999999


Q ss_pred             HHHHHHHhhccccc
Q 030364          162 ELFYEIGDCTECFS  175 (178)
Q Consensus       162 ~~~~~l~~~i~~~~  175 (178)
                      +++++|.+.+.+.+
T Consensus       318 eL~~~L~~~l~~~~  331 (335)
T PRK12299        318 ELLRALWELLEEAR  331 (335)
T ss_pred             HHHHHHHHHHHhhh
Confidence            99999999887654

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=99.95  E-value=2.1e-26  Score=151.97  Aligned_cols=158  Identities=29%  Similarity=0.519  Sum_probs=127.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEE
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVV   89 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v   89 (178)
                      .+||+++|.+|+|||||++++..+.+...+.++.+.+.....+..++..+.+.+||+||+..+...+..+++.++.++.+
T Consensus         1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~   80 (161)
T TIGR00231         1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV   80 (161)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence            37999999999999999999999887777777887777777677777778899999999999988888889999999999


Q ss_pred             EECCCH-hHHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Q 030364           90 YDITSM-DSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI  167 (178)
Q Consensus        90 ~d~~~~-~s~~~~~-~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  167 (178)
                      +|.... .++.... .+...+......+.|+++++||+|+.... ........+......+++++||.+|.|+.+++++|
T Consensus        81 ~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~l  159 (161)
T TIGR00231        81 FDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAK-LKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIV  159 (161)
T ss_pred             EEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcch-hhHHHHHHHhhccCCceEEeecCCCCCHHHHHHHh
Confidence            999876 6666654 56666655443488999999999986543 33344444555556789999999999999999987


Q ss_pred             H
Q 030364          168 G  168 (178)
Q Consensus       168 ~  168 (178)
                      .
T Consensus       160 ~  160 (161)
T TIGR00231       160 E  160 (161)
T ss_pred             h
Confidence            4

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>cd04171 SelB SelB subfamily

Probab=99.95  E-value=2e-26  Score=153.41  Aligned_cols=152  Identities=16%  Similarity=0.137  Sum_probs=103.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCc---CCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEE
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVKGQ---FFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i   87 (178)
                      +.|+++|.+|+|||||+++|.+..   +.....+..+.+.......+.. ...+.+||+||++.+......++..+|+++
T Consensus         1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii   79 (164)
T cd04171           1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVL   79 (164)
T ss_pred             CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEE
Confidence            478999999999999999998642   2222233333333333344442 357889999999988776677788999999


Q ss_pred             EEEECCC---HhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccc--CHHHHHHHHHH---cCCeEEEEeCCCCCC
Q 030364           88 VVYDITS---MDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKV--KNEEGELYAQE---NGLSFLETSAKSAHN  159 (178)
Q Consensus        88 ~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~--~~~~~~~~~~~---~~~~~~~~Sa~~~~~  159 (178)
                      +|+|+++   +++.+.+    ..+...  ...|+++++||+|+......  ...+.....+.   .+.+++++||++|.|
T Consensus        80 ~V~d~~~~~~~~~~~~~----~~~~~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  153 (164)
T cd04171          80 LVVAADEGIMPQTREHL----EILELL--GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGEG  153 (164)
T ss_pred             EEEECCCCccHhHHHHH----HHHHHh--CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcC
Confidence            9999987   3333332    222222  22489999999998653211  11222333333   467999999999999


Q ss_pred             HHHHHHHHHh
Q 030364          160 VNELFYEIGD  169 (178)
Q Consensus       160 i~~~~~~l~~  169 (178)
                      ++++++.|.+
T Consensus       154 v~~l~~~l~~  163 (164)
T cd04171         154 IEELKEYLDE  163 (164)
T ss_pred             HHHHHHHHhh
Confidence            9999998864

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=99.95  E-value=1.5e-25  Score=146.77  Aligned_cols=154  Identities=45%  Similarity=0.784  Sum_probs=122.9

Q ss_pred             EEcCCCCCHHHHHHHHHhCcC-CCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEEEECC
Q 030364           15 LLGDMGTGKTSLVLRFVKGQF-FDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDIT   93 (178)
Q Consensus        15 v~G~~~~GKStl~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~   93 (178)
                      ++|++|+|||||++++.+... .....++. ................+.+||+||...+......++..+|++++|+|++
T Consensus         1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~   79 (157)
T cd00882           1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT   79 (157)
T ss_pred             CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence            589999999999999998877 44444554 6666666677777889999999999888888888899999999999999


Q ss_pred             CHhHHHHHHHHH-HHHHHhCCCCceEEEEEeCCCCccccccCHHH-HHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHh
Q 030364           94 SMDSFERAKKWV-QELQRQGNPNLIMFLVANKVDLEEKRKVKNEE-GELYAQENGLSFLETSAKSAHNVNELFYEIGD  169 (178)
Q Consensus        94 ~~~s~~~~~~~~-~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~-~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  169 (178)
                      ++.++.....|+ .........+.|+++++||+|+.......... ..........+++++|+.++.|+++++++|.+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~  157 (157)
T cd00882          80 DRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENVEELFEELAE  157 (157)
T ss_pred             CHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHhC
Confidence            999988887773 33333445789999999999987654433332 34455566789999999999999999999864

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=99.95  E-value=2.2e-25  Score=155.09  Aligned_cols=163  Identities=39%  Similarity=0.533  Sum_probs=135.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEE
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVV   89 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v   89 (178)
                      .+||+++|++|+|||||+++|.++.+...+.++.+..............+++.+||++|++.++..+..++.+++++++|
T Consensus         5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~   84 (219)
T COG1100           5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIV   84 (219)
T ss_pred             eEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEE
Confidence            48999999999999999999999999988999988888777777766688999999999999999999999999999999


Q ss_pred             EECCC-HhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccc------------ccCHHHHHHHHHHc---CCeEEEEe
Q 030364           90 YDITS-MDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR------------KVKNEEGELYAQEN---GLSFLETS  153 (178)
Q Consensus        90 ~d~~~-~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~------------~~~~~~~~~~~~~~---~~~~~~~S  153 (178)
                      +|..+ ..+++....|...+........|+++++||+|+....            ..............   ...++++|
T Consensus        85 ~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  164 (219)
T COG1100          85 YDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETS  164 (219)
T ss_pred             EecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEee
Confidence            99999 5556667888888888765679999999999997653            22222222222222   33489999


Q ss_pred             CC--CCCCHHHHHHHHHhhcc
Q 030364          154 AK--SAHNVNELFYEIGDCTE  172 (178)
Q Consensus       154 a~--~~~~i~~~~~~l~~~i~  172 (178)
                      ++  .+.++.++|..+.+.+.
T Consensus       165 ~~~~~~~~v~~~~~~~~~~~~  185 (219)
T COG1100         165 AKSLTGPNVNELFKELLRKLL  185 (219)
T ss_pred             cccCCCcCHHHHHHHHHHHHH
Confidence            99  99999999999988775

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.94  E-value=9e-26  Score=150.86  Aligned_cols=158  Identities=16%  Similarity=0.137  Sum_probs=109.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeC-CeEEEEEEEeCCCchhhhccchhhhcCCcEEEEEE
Q 030364           12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLN-EVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY   90 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~   90 (178)
                      .|+++|.+|+|||||+++|..+.+.....+..+.+........+ .....+.+||+||+..+...+..++..+|++++|+
T Consensus         2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~   81 (168)
T cd01887           2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV   81 (168)
T ss_pred             EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence            48999999999999999999888765444344433333333333 13567889999999988888888899999999999


Q ss_pred             ECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccC-HHHHHHHHH------HcCCeEEEEeCCCCCCHHHH
Q 030364           91 DITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVK-NEEGELYAQ------ENGLSFLETSAKSAHNVNEL  163 (178)
Q Consensus        91 d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~-~~~~~~~~~------~~~~~~~~~Sa~~~~~i~~~  163 (178)
                      |+++...... ...+..+..   .+.|+++|+||+|+....... ......+..      ...++++++|+++|.|++++
T Consensus        82 d~~~~~~~~~-~~~~~~~~~---~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  157 (168)
T cd01887          82 AADDGVMPQT-IEAIKLAKA---ANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDL  157 (168)
T ss_pred             ECCCCccHHH-HHHHHHHHH---cCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCCCHHHH
Confidence            9997432221 112222322   468899999999986432111 111111111      12368999999999999999


Q ss_pred             HHHHHhhccc
Q 030364          164 FYEIGDCTEC  173 (178)
Q Consensus       164 ~~~l~~~i~~  173 (178)
                      +++|.+...+
T Consensus       158 ~~~l~~~~~~  167 (168)
T cd01887         158 LEAILLLAEK  167 (168)
T ss_pred             HHHHHHhhhc
Confidence            9999887654

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.94  E-value=2e-26  Score=150.09  Aligned_cols=134  Identities=20%  Similarity=0.267  Sum_probs=97.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCch-----hhhccchhhhcCCcEE
Q 030364           12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE-----RYHSLAPMYYRGAAAA   86 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~-----~~~~~~~~~~~~~d~~   86 (178)
                      ||+++|++|+|||||++++.++.+.  +.++.+.+       +..     .+||+||..     .+..... .++++|++
T Consensus         2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~~~-------~~~-----~~iDt~G~~~~~~~~~~~~~~-~~~~ad~v   66 (142)
T TIGR02528         2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQAVE-------YND-----GAIDTPGEYVENRRLYSALIV-TAADADVI   66 (142)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCccc--cccceeEE-------EcC-----eeecCchhhhhhHHHHHHHHH-HhhcCCEE
Confidence            8999999999999999999977642  22322211       111     589999972     2333333 47899999


Q ss_pred             EEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCC-eEEEEeCCCCCCHHHHHH
Q 030364           87 VVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGL-SFLETSAKSAHNVNELFY  165 (178)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~  165 (178)
                      ++|||++++.++.. ..|...+      ..|+++|+||+|+.+ .....++...+++..+. +++++||++|.|++++|+
T Consensus        67 ilv~d~~~~~s~~~-~~~~~~~------~~p~ilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  138 (142)
T TIGR02528        67 ALVQSATDPESRFP-PGFASIF------VKPVIGLVTKIDLAE-ADVDIERAKELLETAGAEPIFEISSVDEQGLEALVD  138 (142)
T ss_pred             EEEecCCCCCcCCC-hhHHHhc------cCCeEEEEEeeccCC-cccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHH
Confidence            99999999888754 2333221      238999999999864 23344556677777776 899999999999999999


Q ss_pred             HHH
Q 030364          166 EIG  168 (178)
Q Consensus       166 ~l~  168 (178)
                      +|.
T Consensus       139 ~l~  141 (142)
T TIGR02528       139 YLN  141 (142)
T ss_pred             HHh
Confidence            885

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]

Probab=99.94  E-value=4.5e-25  Score=138.92  Aligned_cols=168  Identities=22%  Similarity=0.310  Sum_probs=145.4

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCcCC--CCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhh-hccchhhhcCCcE
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFF--DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERY-HSLAPMYYRGAAA   85 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~-~~~~~~~~~~~d~   85 (178)
                      +..||+|||..++|||+++..|..+...  .++.+|....+.....+-.+..-.+.++||.|...+ ..+-.+|+.-+|+
T Consensus         8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aDa   87 (198)
T KOG3883|consen    8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFADA   87 (198)
T ss_pred             cceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCce
Confidence            4789999999999999999998776543  446777777777666666777778899999998777 6677889999999


Q ss_pred             EEEEEECCCHhHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Q 030364           86 AVVVYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELF  164 (178)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  164 (178)
                      +++|||..+++||+.+..+-..|.++. ...+|++|++||+|+.+++++..+-+..|++...+..+++++.+..++-+.|
T Consensus        88 fVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL~epf  167 (198)
T KOG3883|consen   88 FVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKVKLWEVTAMDRPSLYEPF  167 (198)
T ss_pred             EEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHHHHHHhhhheeEEEEEeccchhhhhHH
Confidence            999999999999999877777777654 4689999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhcccccc
Q 030364          165 YEIGDCTECFSL  176 (178)
Q Consensus       165 ~~l~~~i~~~~~  176 (178)
                      ..+..++.++..
T Consensus       168 ~~l~~rl~~pqs  179 (198)
T KOG3883|consen  168 TYLASRLHQPQS  179 (198)
T ss_pred             HHHHHhccCCcc
Confidence            999998876543

>PRK04213 GTP-binding protein; Provisional

Probab=99.94  E-value=2.5e-26  Score=157.93  Aligned_cols=155  Identities=23%  Similarity=0.206  Sum_probs=105.3

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCC-----------chhhhccc
Q 030364            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAG-----------QERYHSLA   76 (178)
Q Consensus         8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g-----------~~~~~~~~   76 (178)
                      ...++|+++|.+|+|||||++++.+..+.....+  +.+.........    .+.+||+||           .+.+...+
T Consensus         7 ~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~--~~t~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~   80 (201)
T PRK04213          7 DRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRP--GVTRKPNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDEI   80 (201)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCC--ceeeCceEEeec----ceEEEeCCccccccccCHHHHHHHHHHH
Confidence            4578999999999999999999998876544444  333333333333    478999999           45566655


Q ss_pred             hhhhc----CCcEEEEEEECCCHhHH-H---------HHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHH
Q 030364           77 PMYYR----GAAAAVVVYDITSMDSF-E---------RAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYA  142 (178)
Q Consensus        77 ~~~~~----~~d~~i~v~d~~~~~s~-~---------~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~  142 (178)
                      ..++.    .++++++|+|.++.... +         .-..++..+.   ..+.|+++|+||+|+....   .+....+.
T Consensus        81 ~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~p~iiv~NK~Dl~~~~---~~~~~~~~  154 (201)
T PRK04213         81 VRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLR---ELGIPPIVAVNKMDKIKNR---DEVLDEIA  154 (201)
T ss_pred             HHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHH---HcCCCeEEEEECccccCcH---HHHHHHHH
Confidence            55553    45788888888653211 0         0011122222   2478999999999986533   23445555


Q ss_pred             HHcCC---------eEEEEeCCCCCCHHHHHHHHHhhccccc
Q 030364          143 QENGL---------SFLETSAKSAHNVNELFYEIGDCTECFS  175 (178)
Q Consensus       143 ~~~~~---------~~~~~Sa~~~~~i~~~~~~l~~~i~~~~  175 (178)
                      +.+++         +++++||++| |+++++++|.+.+...+
T Consensus       155 ~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~~~  195 (201)
T PRK04213        155 ERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHEAK  195 (201)
T ss_pred             HHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcCcc
Confidence            55554         5899999999 99999999999887654

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=99.94  E-value=1.9e-25  Score=147.79  Aligned_cols=149  Identities=21%  Similarity=0.197  Sum_probs=110.3

Q ss_pred             EEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhcc------chhhhc--CCcEE
Q 030364           15 LLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSL------APMYYR--GAAAA   86 (178)
Q Consensus        15 v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~------~~~~~~--~~d~~   86 (178)
                      ++|.+|+|||||++++.+........+..+.+.....+.+++  ..+.+|||||...+...      ...++.  .+|++
T Consensus         1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v   78 (158)
T cd01879           1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI   78 (158)
T ss_pred             CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence            589999999999999998765443445445555455556665  46789999998766542      445554  89999


Q ss_pred             EEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Q 030364           87 VVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYE  166 (178)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  166 (178)
                      ++|+|+++++...   .++..+..   .+.|+++++||+|+.....+... ...+...++++++++||++|.|+++++++
T Consensus        79 i~v~d~~~~~~~~---~~~~~~~~---~~~~~iiv~NK~Dl~~~~~~~~~-~~~~~~~~~~~~~~iSa~~~~~~~~l~~~  151 (158)
T cd01879          79 VNVVDATNLERNL---YLTLQLLE---LGLPVVVALNMIDEAEKRGIKID-LDKLSELLGVPVVPTSARKGEGIDELKDA  151 (158)
T ss_pred             EEEeeCCcchhHH---HHHHHHHH---cCCCEEEEEehhhhcccccchhh-HHHHHHhhCCCeEEEEccCCCCHHHHHHH
Confidence            9999999865432   23333333   36899999999999765444333 45667777899999999999999999999


Q ss_pred             HHhhcc
Q 030364          167 IGDCTE  172 (178)
Q Consensus       167 l~~~i~  172 (178)
                      |.+.++
T Consensus       152 l~~~~~  157 (158)
T cd01879         152 IAELAE  157 (158)
T ss_pred             HHHHhc
Confidence            988754

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]

Probab=99.94  E-value=3.1e-27  Score=147.63  Aligned_cols=160  Identities=22%  Similarity=0.346  Sum_probs=129.1

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEE
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVV   88 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~   88 (178)
                      .++.+.++|..++|||||+|....+.+.+...|+.+..    ...+....+.+.+||.||+..|+.+|..|.++++++++
T Consensus        19 ~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfn----mrk~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY   94 (186)
T KOG0075|consen   19 EEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFN----MRKVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVY   94 (186)
T ss_pred             heeeEEEEeeccCCcceEEEEEeeccchhhhcccccce----eEEeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEE
Confidence            37899999999999999999999888887788888744    34455567888999999999999999999999999999


Q ss_pred             EEECCCHhHHHHHHHHHHHHHH-hCCCCceEEEEEeCCCCccccccCHHHHHHH-----HHHcCCeEEEEeCCCCCCHHH
Q 030364           89 VYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY-----AQENGLSFLETSAKSAHNVNE  162 (178)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~-~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~i~~  162 (178)
                      |+|+++++.++..+..+..+.. ....+.|++|++||.|++++-.  ......-     .....+-+|.+|++...+++.
T Consensus        95 ~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~--~~~li~rmgL~sitdREvcC~siScke~~Nid~  172 (186)
T KOG0075|consen   95 VVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALS--KIALIERMGLSSITDREVCCFSISCKEKVNIDI  172 (186)
T ss_pred             EeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCccccc--HHHHHHHhCccccccceEEEEEEEEcCCccHHH
Confidence            9999999998888766666544 4468999999999999876432  2221111     112335789999999999999


Q ss_pred             HHHHHHhhcccc
Q 030364          163 LFYEIGDCTECF  174 (178)
Q Consensus       163 ~~~~l~~~i~~~  174 (178)
                      +.+||++..+..
T Consensus       173 ~~~Wli~hsk~~  184 (186)
T KOG0075|consen  173 TLDWLIEHSKSL  184 (186)
T ss_pred             HHHHHHHHhhhh
Confidence            999999876654

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.94  E-value=2e-25  Score=164.02  Aligned_cols=154  Identities=21%  Similarity=0.194  Sum_probs=111.6

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCch---------hhhccchhh
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE---------RYHSLAPMY   79 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~---------~~~~~~~~~   79 (178)
                      ..++|+++|.+|+|||||+|+|++........+..+.+.....+.+++. ..+.+|||+|..         .|... ...
T Consensus       188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~-~~i~l~DT~G~~~~l~~~lie~f~~t-le~  265 (351)
T TIGR03156       188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDG-GEVLLTDTVGFIRDLPHELVAAFRAT-LEE  265 (351)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCC-ceEEEEecCcccccCCHHHHHHHHHH-HHH
Confidence            3589999999999999999999987654333333334445555666432 467899999971         22222 224


Q ss_pred             hcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCC
Q 030364           80 YRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHN  159 (178)
Q Consensus        80 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  159 (178)
                      +..+|++++|+|++++.+.+....|...+......+.|+++|+||+|+.....+     ... .....+++.+||++|.|
T Consensus       266 ~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~~v-----~~~-~~~~~~~i~iSAktg~G  339 (351)
T TIGR03156       266 VREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEPRI-----ERL-EEGYPEAVFVSAKTGEG  339 (351)
T ss_pred             HHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChHhH-----HHH-HhCCCCEEEEEccCCCC
Confidence            788999999999999888887776666666654557899999999998643221     111 11235789999999999


Q ss_pred             HHHHHHHHHhh
Q 030364          160 VNELFYEIGDC  170 (178)
Q Consensus       160 i~~~~~~l~~~  170 (178)
                      +++++++|.+.
T Consensus       340 I~eL~~~I~~~  350 (351)
T TIGR03156       340 LDLLLEAIAER  350 (351)
T ss_pred             HHHHHHHHHhh
Confidence            99999999765

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=99.94  E-value=2.9e-25  Score=161.83  Aligned_cols=159  Identities=18%  Similarity=0.169  Sum_probs=114.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhh----ccc---hhhhcCC
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYH----SLA---PMYYRGA   83 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~----~~~---~~~~~~~   83 (178)
                      ..|+++|.||||||||++++...+......+.++.......+.+++ ...+.+||+||.....    .+.   ...++.+
T Consensus       158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrhiera  236 (329)
T TIGR02729       158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKHIERT  236 (329)
T ss_pred             ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHHHHhh
Confidence            4799999999999999999997653211112222333333344443 3567899999974221    222   2335579


Q ss_pred             cEEEEEEECCCH---hHHHHHHHHHHHHHHhC--CCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCC
Q 030364           84 AAAVVVYDITSM---DSFERAKKWVQELQRQG--NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAH  158 (178)
Q Consensus        84 d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~--~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  158 (178)
                      +++++|+|+++.   ++++.+..|.+++....  ..+.|+++|+||+|+..+.. ..+....+.+..+.+++++||++++
T Consensus       237 d~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~-~~~~~~~l~~~~~~~vi~iSAktg~  315 (329)
T TIGR02729       237 RVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEE-LAELLKELKKALGKPVFPISALTGE  315 (329)
T ss_pred             CEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHH-HHHHHHHHHHHcCCcEEEEEccCCc
Confidence            999999999986   67888888877776543  25789999999999876533 2334455666677899999999999


Q ss_pred             CHHHHHHHHHhhc
Q 030364          159 NVNELFYEIGDCT  171 (178)
Q Consensus       159 ~i~~~~~~l~~~i  171 (178)
                      |+++++++|.+.+
T Consensus       316 GI~eL~~~I~~~l  328 (329)
T TIGR02729       316 GLDELLYALAELL  328 (329)
T ss_pred             CHHHHHHHHHHHh
Confidence            9999999998865

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=7.5e-26  Score=140.41  Aligned_cols=159  Identities=23%  Similarity=0.389  Sum_probs=125.5

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEE
Q 030364            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (178)
Q Consensus         8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i   87 (178)
                      .++++|+++|..++||||++..|..+.... ..||.+..  ...+++.  +++|.+||.+|+++.+..|.+|+....++|
T Consensus        15 ~KE~~ilmlGLd~aGKTtiLyKLkl~~~~~-~ipTvGFn--vetVtyk--N~kfNvwdvGGqd~iRplWrhYy~gtqglI   89 (180)
T KOG0071|consen   15 NKEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFN--VETVTYK--NVKFNVWDVGGQDKIRPLWRHYYTGTQGLI   89 (180)
T ss_pred             cccceEEEEecccCCceehhhHHhcCCCcc-ccccccee--EEEEEee--eeEEeeeeccCchhhhHHHHhhccCCceEE
Confidence            458999999999999999999999776543 44555533  4444444  478889999999999999999999999999


Q ss_pred             EEEECCCHhHHHHHHHHHHHHHH-hCCCCceEEEEEeCCCCccccccCHHHHHHH-----HHHcCCeEEEEeCCCCCCHH
Q 030364           88 VVYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY-----AQENGLSFLETSAKSAHNVN  161 (178)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~-~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~i~  161 (178)
                      ||+|..+++..++.+..+..+.. ....+.|++|.+||.|++++..+  .+...+     ++...+-+.++|+.+|.|+.
T Consensus        90 FV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~p--qei~d~leLe~~r~~~W~vqp~~a~~gdgL~  167 (180)
T KOG0071|consen   90 FVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKP--QEIQDKLELERIRDRNWYVQPSCALSGDGLK  167 (180)
T ss_pred             EEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCH--HHHHHHhccccccCCccEeeccccccchhHH
Confidence            99999999888887765555444 44578999999999999875543  333222     33344678899999999999


Q ss_pred             HHHHHHHhhccc
Q 030364          162 ELFYEIGDCTEC  173 (178)
Q Consensus       162 ~~~~~l~~~i~~  173 (178)
                      +-|.||.+.++.
T Consensus       168 eglswlsnn~~~  179 (180)
T KOG0071|consen  168 EGLSWLSNNLKE  179 (180)
T ss_pred             HHHHHHHhhccC
Confidence            999999987753

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=99.94  E-value=8e-26  Score=154.56  Aligned_cols=149  Identities=19%  Similarity=0.217  Sum_probs=104.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh--CcCCCCc------------cCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccc
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVK--GQFFDFQ------------ESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLA   76 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~   76 (178)
                      .+|+++|.+++|||||+++|++  +.+...+            .++.+.+.......+....+.+.+||+||++.|...+
T Consensus         3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~   82 (194)
T cd01891           3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV   82 (194)
T ss_pred             cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence            5899999999999999999997  4443322            1233444444444555556788999999999999999


Q ss_pred             hhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccc-CHHHHHHHHH-------HcCCe
Q 030364           77 PMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKV-KNEEGELYAQ-------ENGLS  148 (178)
Q Consensus        77 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~-~~~~~~~~~~-------~~~~~  148 (178)
                      ..+++.+|++++|+|+++.. +.....++..+..   .+.|+++++||+|+...... ..++...+..       ..+++
T Consensus        83 ~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (194)
T cd01891          83 ERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE---LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDFP  158 (194)
T ss_pred             HHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH---cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCccC
Confidence            99999999999999998742 2333333443333   36889999999998643221 1223333331       23679


Q ss_pred             EEEEeCCCCCCHHHH
Q 030364          149 FLETSAKSAHNVNEL  163 (178)
Q Consensus       149 ~~~~Sa~~~~~i~~~  163 (178)
                      ++++||++|.|+++.
T Consensus       159 iv~~Sa~~g~~~~~~  173 (194)
T cd01891         159 VLYASAKNGWASLNL  173 (194)
T ss_pred             EEEeehhcccccccc
Confidence            999999999876443

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=99.93  E-value=2.8e-25  Score=144.48  Aligned_cols=148  Identities=19%  Similarity=0.274  Sum_probs=103.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhh------ccchhhh--cC
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYH------SLAPMYY--RG   82 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~------~~~~~~~--~~   82 (178)
                      ++|+++|.||+|||||+|+|++.+..-...|..+.+.....+.+.+  ..+.++|+||.-...      .....++  ..
T Consensus         1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~--~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~   78 (156)
T PF02421_consen    1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD--QQVELVDLPGIYSLSSKSEEERVARDYLLSEK   78 (156)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT--EEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC--ceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence            5899999999999999999999875433344455555555566666  466799999952222      1223333  68


Q ss_pred             CcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHH
Q 030364           83 AAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNE  162 (178)
Q Consensus        83 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  162 (178)
                      .|++++|+|+++.+   +-..+..++...   +.|+++++||+|......+. .....+++.+++|++.+||++++|+++
T Consensus        79 ~D~ii~VvDa~~l~---r~l~l~~ql~e~---g~P~vvvlN~~D~a~~~g~~-id~~~Ls~~Lg~pvi~~sa~~~~g~~~  151 (156)
T PF02421_consen   79 PDLIIVVVDATNLE---RNLYLTLQLLEL---GIPVVVVLNKMDEAERKGIE-IDAEKLSERLGVPVIPVSARTGEGIDE  151 (156)
T ss_dssp             SSEEEEEEEGGGHH---HHHHHHHHHHHT---TSSEEEEEETHHHHHHTTEE-E-HHHHHHHHTS-EEEEBTTTTBTHHH
T ss_pred             CCEEEEECCCCCHH---HHHHHHHHHHHc---CCCEEEEEeCHHHHHHcCCE-ECHHHHHHHhCCCEEEEEeCCCcCHHH
Confidence            99999999999743   323344455544   78999999999987654433 346677888999999999999999999


Q ss_pred             HHHHH
Q 030364          163 LFYEI  167 (178)
Q Consensus       163 ~~~~l  167 (178)
                      ++++|
T Consensus       152 L~~~I  156 (156)
T PF02421_consen  152 LKDAI  156 (156)
T ss_dssp             HHHHH
T ss_pred             HHhhC
Confidence            99875

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>TIGR00436 era GTP-binding protein Era

Probab=99.93  E-value=3.9e-25  Score=158.11  Aligned_cols=154  Identities=18%  Similarity=0.081  Sum_probs=103.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEE-EEEEEeCCeEEEEEEEeCCCchhhh--------ccchhhhcC
Q 030364           12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFF-TQVLSLNEVTIKFDIWDTAGQERYH--------SLAPMYYRG   82 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~--------~~~~~~~~~   82 (178)
                      +|+++|.||+|||||+|+|++.++.. ..+..+++.. ...+...+ ..++.+|||||.....        .....++..
T Consensus         2 ~V~liG~pnvGKSTLln~L~~~~~~~-vs~~~~TTr~~i~~i~~~~-~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~   79 (270)
T TIGR00436         2 FVAILGRPNVGKSTLLNQLHGQKISI-TSPKAQTTRNRISGIHTTG-ASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGG   79 (270)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCcEee-cCCCCCcccCcEEEEEEcC-CcEEEEEECcCCCCCcchHHHHHHHHHHHHHhh
Confidence            68999999999999999999876532 1221122111 12222222 2468899999974321        112346789


Q ss_pred             CcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCC-eEEEEeCCCCCCHH
Q 030364           83 AAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGL-SFLETSAKSAHNVN  161 (178)
Q Consensus        83 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~  161 (178)
                      +|++++|+|+++..+.+  ..++..+..   .+.|+++|+||+|+...... ......+....+. +++++||++|.|++
T Consensus        80 aDvvl~VvD~~~~~~~~--~~i~~~l~~---~~~p~ilV~NK~Dl~~~~~~-~~~~~~~~~~~~~~~v~~iSA~~g~gi~  153 (270)
T TIGR00436        80 VDLILFVVDSDQWNGDG--EFVLTKLQN---LKRPVVLTRNKLDNKFKDKL-LPLIDKYAILEDFKDIVPISALTGDNTS  153 (270)
T ss_pred             CCEEEEEEECCCCCchH--HHHHHHHHh---cCCCEEEEEECeeCCCHHHH-HHHHHHHHhhcCCCceEEEecCCCCCHH
Confidence            99999999999876554  333333433   36899999999998643322 2233344444444 89999999999999


Q ss_pred             HHHHHHHhhccc
Q 030364          162 ELFYEIGDCTEC  173 (178)
Q Consensus       162 ~~~~~l~~~i~~  173 (178)
                      +++++|.+.+..
T Consensus       154 ~L~~~l~~~l~~  165 (270)
T TIGR00436       154 FLAAFIEVHLPE  165 (270)
T ss_pred             HHHHHHHHhCCC
Confidence            999999987753

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=99.93  E-value=9.7e-25  Score=138.02  Aligned_cols=114  Identities=32%  Similarity=0.568  Sum_probs=89.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCcCC--CCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEE
Q 030364           12 KLVLLGDMGTGKTSLVLRFVKGQFF--DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVV   89 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v   89 (178)
                      ||+|+|++|||||||+++|.+..+.  ....+..+.++.............+.+||++|++.+...+..++..+|++++|
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv   80 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV   80 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred             CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence            7999999999999999999998876  22344455555555667777777799999999999998888889999999999


Q ss_pred             EECCCHhHHHHHHHH---HHHHHHhCCCCceEEEEEeCCC
Q 030364           90 YDITSMDSFERAKKW---VQELQRQGNPNLIMFLVANKVD  126 (178)
Q Consensus        90 ~d~~~~~s~~~~~~~---~~~~~~~~~~~~~~ivv~nK~D  126 (178)
                      ||++++++++.+..+   +..+... ..+.|++||+||.|
T Consensus        81 ~D~s~~~s~~~~~~~~~~l~~~~~~-~~~~piilv~nK~D  119 (119)
T PF08477_consen   81 YDLSDPESLEYLSQLLKWLKNIRKR-DKNIPIILVGNKSD  119 (119)
T ss_dssp             EECCGHHHHHHHHHHHHHHHHHHHH-SSCSEEEEEEE-TC
T ss_pred             EcCCChHHHHHHHHHHHHHHHHHcc-CCCCCEEEEEeccC
Confidence            999999999998655   4444443 45699999999998

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=99.93  E-value=9.1e-25  Score=147.01  Aligned_cols=155  Identities=21%  Similarity=0.192  Sum_probs=107.4

Q ss_pred             EEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhh----hccc---hhhhcCCcEEE
Q 030364           15 LLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERY----HSLA---PMYYRGAAAAV   87 (178)
Q Consensus        15 v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~----~~~~---~~~~~~~d~~i   87 (178)
                      ++|++|||||||+++|.+........+..+.........+++ ...+.+||+||....    ....   ...+..+|+++
T Consensus         1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii   79 (176)
T cd01881           1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPD-GARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAIL   79 (176)
T ss_pred             CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCC-CCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEE
Confidence            589999999999999998764211112222222223334441 356789999996321    1222   23467899999


Q ss_pred             EEEECCCH------hHHHHHHHHHHHHHHhCC-------CCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeC
Q 030364           88 VVYDITSM------DSFERAKKWVQELQRQGN-------PNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSA  154 (178)
Q Consensus        88 ~v~d~~~~------~s~~~~~~~~~~~~~~~~-------~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  154 (178)
                      +|+|++++      .+++....|...+.....       .+.|+++|+||+|+..................+.+++++||
T Consensus        80 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa  159 (176)
T cd01881          80 HVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPISA  159 (176)
T ss_pred             EEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEEeh
Confidence            99999987      577777777777765432       47899999999999765443333223344445678999999


Q ss_pred             CCCCCHHHHHHHHHhh
Q 030364          155 KSAHNVNELFYEIGDC  170 (178)
Q Consensus       155 ~~~~~i~~~~~~l~~~  170 (178)
                      +++.|++++++++.+.
T Consensus       160 ~~~~gl~~l~~~l~~~  175 (176)
T cd01881         160 KTEEGLDELIRAIYEL  175 (176)
T ss_pred             hhhcCHHHHHHHHHhh
Confidence            9999999999998765

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>PRK15494 era GTPase Era; Provisional

Probab=99.93  E-value=2.1e-24  Score=158.38  Aligned_cols=154  Identities=21%  Similarity=0.316  Sum_probs=104.8

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceee--eEEEEEEEeCCeEEEEEEEeCCCchh-hhccc-------h
Q 030364            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGA--AFFTQVLSLNEVTIKFDIWDTAGQER-YHSLA-------P   77 (178)
Q Consensus         8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~d~~g~~~-~~~~~-------~   77 (178)
                      ++..+|+++|.+|+|||||+|+|.+.++.. ..+..++  ......+..++  .++.||||||... +..+.       .
T Consensus        50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~i-vs~k~~tTr~~~~~~~~~~~--~qi~~~DTpG~~~~~~~l~~~~~r~~~  126 (339)
T PRK15494         50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSI-VTPKVQTTRSIITGIITLKD--TQVILYDTPGIFEPKGSLEKAMVRCAW  126 (339)
T ss_pred             cceeEEEEEcCCCCCHHHHHHHHhCCceee-ccCCCCCccCcEEEEEEeCC--eEEEEEECCCcCCCcccHHHHHHHHHH
Confidence            456799999999999999999999877642 2222222  22233344444  4678999999843 22211       2


Q ss_pred             hhhcCCcEEEEEEECCCHhHHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcC--CeEEEEeC
Q 030364           78 MYYRGAAAAVVVYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENG--LSFLETSA  154 (178)
Q Consensus        78 ~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa  154 (178)
                      ..+..+|++++|+|..+  ++.... .++..+...   +.|.++|+||+|+...   ...+...++...+  ..++++||
T Consensus       127 ~~l~~aDvil~VvD~~~--s~~~~~~~il~~l~~~---~~p~IlViNKiDl~~~---~~~~~~~~l~~~~~~~~i~~iSA  198 (339)
T PRK15494        127 SSLHSADLVLLIIDSLK--SFDDITHNILDKLRSL---NIVPIFLLNKIDIESK---YLNDIKAFLTENHPDSLLFPISA  198 (339)
T ss_pred             HHhhhCCEEEEEEECCC--CCCHHHHHHHHHHHhc---CCCEEEEEEhhcCccc---cHHHHHHHHHhcCCCcEEEEEec
Confidence            34679999999999775  344433 344444432   4577889999998643   1234444444443  68999999


Q ss_pred             CCCCCHHHHHHHHHhhcc
Q 030364          155 KSAHNVNELFYEIGDCTE  172 (178)
Q Consensus       155 ~~~~~i~~~~~~l~~~i~  172 (178)
                      ++|.|+++++++|.+.+.
T Consensus       199 ktg~gv~eL~~~L~~~l~  216 (339)
T PRK15494        199 LSGKNIDGLLEYITSKAK  216 (339)
T ss_pred             cCccCHHHHHHHHHHhCC
Confidence            999999999999998764

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=99.93  E-value=1.8e-24  Score=142.81  Aligned_cols=146  Identities=19%  Similarity=0.178  Sum_probs=104.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCcCCC-CccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhcc--------chhhhc
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVKGQFFD-FQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSL--------APMYYR   81 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~--------~~~~~~   81 (178)
                      ++|+++|++|+|||||++++.+..... ...+..+..........++  ..+.+||+||...+...        ....+.
T Consensus         2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~   79 (157)
T cd04164           2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGG--IPVRLIDTAGIRETEDEIEKIGIERAREAIE   79 (157)
T ss_pred             cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCC--EEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence            589999999999999999999876421 1222222233333334443  56789999997544321        234567


Q ss_pred             CCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHH
Q 030364           82 GAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVN  161 (178)
Q Consensus        82 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  161 (178)
                      .+|++++|+|++++.+......+..      ..+.|+++++||+|+......       .....+.+++++||+++.|++
T Consensus        80 ~~~~~v~v~d~~~~~~~~~~~~~~~------~~~~~vi~v~nK~D~~~~~~~-------~~~~~~~~~~~~Sa~~~~~v~  146 (157)
T cd04164          80 EADLVLFVIDASRGLDEEDLEILEL------PADKPIIVVLNKSDLLPDSEL-------LSLLAGKPIIAISAKTGEGLD  146 (157)
T ss_pred             hCCEEEEEEECCCCCCHHHHHHHHh------hcCCCEEEEEEchhcCCcccc-------ccccCCCceEEEECCCCCCHH
Confidence            8999999999998776666543322      357899999999998754433       334456799999999999999


Q ss_pred             HHHHHHHhhc
Q 030364          162 ELFYEIGDCT  171 (178)
Q Consensus       162 ~~~~~l~~~i  171 (178)
                      +++++|.+.+
T Consensus       147 ~l~~~l~~~~  156 (157)
T cd04164         147 ELKEALLELA  156 (157)
T ss_pred             HHHHHHHHhh
Confidence            9999998764

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.92  E-value=3.3e-24  Score=163.91  Aligned_cols=161  Identities=22%  Similarity=0.199  Sum_probs=112.3

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCcCC-CCccCceeeeEEEEEEEeCCeEEEEEEEeCCCc----------hhhhccc-
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFF-DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ----------ERYHSLA-   76 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~----------~~~~~~~-   76 (178)
                      ..++|+++|.+|+|||||+++|++.... ....+..+.+.....+..++..  +.+|||||.          +.+.... 
T Consensus       210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~--~~l~DTaG~~~~~~~~~~~e~~~~~~~  287 (472)
T PRK03003        210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKT--WRFVDTAGLRRRVKQASGHEYYASLRT  287 (472)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEE--EEEEECCCccccccccchHHHHHHHHH
Confidence            4689999999999999999999987642 2233444444444555666654  569999995          2222222 


Q ss_pred             hhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccC--HHHH-HHHHHHcCCeEEEEe
Q 030364           77 PMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVK--NEEG-ELYAQENGLSFLETS  153 (178)
Q Consensus        77 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~--~~~~-~~~~~~~~~~~~~~S  153 (178)
                      ..+++.+|++++|+|++++.++..+. ++..+..   .+.|+++|+||+|+.......  ..+. ..+.....++++++|
T Consensus       288 ~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~---~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~S  363 (472)
T PRK03003        288 HAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE---AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNIS  363 (472)
T ss_pred             HHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEE
Confidence            23578999999999999987777653 3344433   478999999999986422110  1111 122222347899999


Q ss_pred             CCCCCCHHHHHHHHHhhccccc
Q 030364          154 AKSAHNVNELFYEIGDCTECFS  175 (178)
Q Consensus       154 a~~~~~i~~~~~~l~~~i~~~~  175 (178)
                      |++|.|++++|+.+.+.++.++
T Consensus       364 Ak~g~gv~~lf~~i~~~~~~~~  385 (472)
T PRK03003        364 AKTGRAVDKLVPALETALESWD  385 (472)
T ss_pred             CCCCCCHHHHHHHHHHHHHHhc
Confidence            9999999999999998876554

>cd00881 GTP_translation_factor GTP translation factor family

Probab=99.92  E-value=7.1e-24  Score=144.15  Aligned_cols=157  Identities=18%  Similarity=0.150  Sum_probs=109.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCcCCCCccCce--------------eeeEEEEEEEeCCeEEEEEEEeCCCchhhhccch
Q 030364           12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTI--------------GAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAP   77 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~   77 (178)
                      +|+++|.+|+|||||++++.+...........              +.+..............+.+||+||...+...+.
T Consensus         1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~   80 (189)
T cd00881           1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI   80 (189)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence            58999999999999999999876654331111              1111122222222346788999999988888888


Q ss_pred             hhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccC--HHHHHHHHHH-----------
Q 030364           78 MYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVK--NEEGELYAQE-----------  144 (178)
Q Consensus        78 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~--~~~~~~~~~~-----------  144 (178)
                      .++..+|++++|+|++++..... ..++..+..   .+.|+++++||+|+..+....  ........+.           
T Consensus        81 ~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~---~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (189)
T cd00881          81 RGLSVSDGAILVVDANEGVQPQT-REHLRIARE---GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEGT  156 (189)
T ss_pred             HHHHhcCEEEEEEECCCCCcHHH-HHHHHHHHH---CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhhhc
Confidence            88999999999999997654332 233333332   578999999999987532221  1122222222           


Q ss_pred             ---cCCeEEEEeCCCCCCHHHHHHHHHhhcc
Q 030364          145 ---NGLSFLETSAKSAHNVNELFYEIGDCTE  172 (178)
Q Consensus       145 ---~~~~~~~~Sa~~~~~i~~~~~~l~~~i~  172 (178)
                         ...+++++||++|.|+++++.+|.+.+.
T Consensus       157 ~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~  187 (189)
T cd00881         157 RNGLLVPIVPGSALTGIGVEELLEAIVEHLP  187 (189)
T ss_pred             ccCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence               3578999999999999999999998874

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=99.92  E-value=7.3e-24  Score=159.88  Aligned_cols=151  Identities=20%  Similarity=0.207  Sum_probs=112.1

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCcC-CCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhcc--------chhh
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVKGQF-FDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSL--------APMY   79 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~--------~~~~   79 (178)
                      ..++|+++|.+|+|||||+|+|++... .....+.++.+.....+.+++.  .+.+|||||...+...        ...+
T Consensus       202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~--~v~l~DTaG~~~~~~~ie~~gi~~~~~~  279 (442)
T TIGR00450       202 DGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGI--LIKLLDTAGIREHADFVERLGIEKSFKA  279 (442)
T ss_pred             cCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCE--EEEEeeCCCcccchhHHHHHHHHHHHHH
Confidence            468999999999999999999998653 1222344445555666667664  5679999998554332        2357


Q ss_pred             hcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCC
Q 030364           80 YRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHN  159 (178)
Q Consensus        80 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  159 (178)
                      ++.+|++++|+|++++.+++..  |+..+..   .+.|+++|+||+|+...      ....+++.++.+++.+||++ .|
T Consensus       280 ~~~aD~il~V~D~s~~~s~~~~--~l~~~~~---~~~piIlV~NK~Dl~~~------~~~~~~~~~~~~~~~vSak~-~g  347 (442)
T TIGR00450       280 IKQADLVIYVLDASQPLTKDDF--LIIDLNK---SKKPFILVLNKIDLKIN------SLEFFVSSKVLNSSNLSAKQ-LK  347 (442)
T ss_pred             HhhCCEEEEEEECCCCCChhHH--HHHHHhh---CCCCEEEEEECccCCCc------chhhhhhhcCCceEEEEEec-CC
Confidence            7899999999999988877664  5554432   46899999999998643      12344566778999999998 69


Q ss_pred             HHHHHHHHHhhccc
Q 030364          160 VNELFYEIGDCTEC  173 (178)
Q Consensus       160 i~~~~~~l~~~i~~  173 (178)
                      ++++++.|.+.+.+
T Consensus       348 I~~~~~~L~~~i~~  361 (442)
T TIGR00450       348 IKALVDLLTQKINA  361 (442)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999998887754

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=99.92  E-value=1.9e-23  Score=156.09  Aligned_cols=158  Identities=22%  Similarity=0.184  Sum_probs=112.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhh----hccchh---hhcCCc
Q 030364           12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERY----HSLAPM---YYRGAA   84 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~----~~~~~~---~~~~~d   84 (178)
                      .|+++|.||||||||++++++.+..-...+.++.......+.++. ...+.+||+||....    ..+...   .++.++
T Consensus       160 dVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~-~~~~~laD~PGliega~~~~gLg~~fLrhier~~  238 (424)
T PRK12297        160 DVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDD-GRSFVMADIPGLIEGASEGVGLGHQFLRHIERTR  238 (424)
T ss_pred             cEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeC-CceEEEEECCCCcccccccchHHHHHHHHHhhCC
Confidence            899999999999999999997663211122223333333333331 356789999996321    112222   355699


Q ss_pred             EEEEEEECCCH---hHHHHHHHHHHHHHHhC--CCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCC
Q 030364           85 AAVVVYDITSM---DSFERAKKWVQELQRQG--NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHN  159 (178)
Q Consensus        85 ~~i~v~d~~~~---~s~~~~~~~~~~~~~~~--~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  159 (178)
                      ++++|+|+++.   ++++....|..++..+.  ..++|++||+||+|+...    .+....+.+..+.+++++||+++.|
T Consensus       239 llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~----~e~l~~l~~~l~~~i~~iSA~tgeG  314 (424)
T PRK12297        239 VIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEA----EENLEEFKEKLGPKVFPISALTGQG  314 (424)
T ss_pred             EEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCC----HHHHHHHHHHhCCcEEEEeCCCCCC
Confidence            99999999864   67777777777777653  247899999999998432    2344556666668999999999999


Q ss_pred             HHHHHHHHHhhcccc
Q 030364          160 VNELFYEIGDCTECF  174 (178)
Q Consensus       160 i~~~~~~l~~~i~~~  174 (178)
                      +++++++|.+.+...
T Consensus       315 I~eL~~~L~~~l~~~  329 (424)
T PRK12297        315 LDELLYAVAELLEET  329 (424)
T ss_pred             HHHHHHHHHHHHHhC
Confidence            999999999887654

>cd01889 SelB_euk SelB subfamily

Probab=99.92  E-value=7.7e-24  Score=144.55  Aligned_cols=158  Identities=20%  Similarity=0.152  Sum_probs=101.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC----cCCCC---cc--CceeeeEEEEEEE----------eCCeEEEEEEEeCCCchh
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVKG----QFFDF---QE--STIGAAFFTQVLS----------LNEVTIKFDIWDTAGQER   71 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~~----~~~~~---~~--~~~~~~~~~~~~~----------~~~~~~~~~i~d~~g~~~   71 (178)
                      ++|+++|++++|||||+++|+..    .+...   ..  .+.........+.          .++..+.+.+||+||+..
T Consensus         1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~   80 (192)
T cd01889           1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS   80 (192)
T ss_pred             CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence            58999999999999999999862    11111   11  1222222222222          123367889999999976


Q ss_pred             hhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccc--CHHHHHH-HHH-----
Q 030364           72 YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKV--KNEEGEL-YAQ-----  143 (178)
Q Consensus        72 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~--~~~~~~~-~~~-----  143 (178)
                      +..........+|++++|+|+++.........+ . +...  .+.|+++++||+|+......  ..++... +..     
T Consensus        81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~-~-~~~~--~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~  156 (192)
T cd01889          81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECL-V-IGEI--LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKT  156 (192)
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHH-H-HHHH--cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhc
Confidence            544444456678999999999975433322221 1 1121  25689999999998643221  1111111 111     


Q ss_pred             -HcCCeEEEEeCCCCCCHHHHHHHHHhhcc
Q 030364          144 -ENGLSFLETSAKSAHNVNELFYEIGDCTE  172 (178)
Q Consensus       144 -~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~  172 (178)
                       ..+++++++||++|.|+++++++|.++|-
T Consensus       157 ~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~  186 (192)
T cd01889         157 RFKNSPIIPVSAKPGGGEAELGKDLNNLIV  186 (192)
T ss_pred             CcCCCCEEEEeccCCCCHHHHHHHHHhccc
Confidence             24579999999999999999999998874

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=99.92  E-value=5.8e-24  Score=140.65  Aligned_cols=140  Identities=16%  Similarity=0.209  Sum_probs=97.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCch----hhhccchhhhcCCcEEE
Q 030364           12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE----RYHSLAPMYYRGAAAAV   87 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~----~~~~~~~~~~~~~d~~i   87 (178)
                      +|+++|.+|+|||||++++.+.....  ..+.       ...+...    .+||+||..    .+.......+..+|+++
T Consensus         3 ~i~~iG~~~~GKstl~~~l~~~~~~~--~~~~-------~v~~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il   69 (158)
T PRK15467          3 RIAFVGAVGAGKTTLFNALQGNYTLA--RKTQ-------AVEFNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLI   69 (158)
T ss_pred             EEEEECCCCCCHHHHHHHHcCCCccC--ccce-------EEEECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEE
Confidence            79999999999999999987543211  1111       1122222    269999962    12222223478999999


Q ss_pred             EEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCC--eEEEEeCCCCCCHHHHHH
Q 030364           88 VVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGL--SFLETSAKSAHNVNELFY  165 (178)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~--~~~~~Sa~~~~~i~~~~~  165 (178)
                      +|+|+++.+++..  .|+..+    ..+.|+++++||+|+.+.   ..+....++...++  |++++||++|+|++++|+
T Consensus        70 ~v~d~~~~~s~~~--~~~~~~----~~~~~ii~v~nK~Dl~~~---~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~  140 (158)
T PRK15467         70 YVHGANDPESRLP--AGLLDI----GVSKRQIAVISKTDMPDA---DVAATRKLLLETGFEEPIFELNSHDPQSVQQLVD  140 (158)
T ss_pred             EEEeCCCcccccC--HHHHhc----cCCCCeEEEEEccccCcc---cHHHHHHHHHHcCCCCCEEEEECCCccCHHHHHH
Confidence            9999998776522  233322    246789999999998642   34455666666764  999999999999999999


Q ss_pred             HHHhhccc
Q 030364          166 EIGDCTEC  173 (178)
Q Consensus       166 ~l~~~i~~  173 (178)
                      +|.+.+..
T Consensus       141 ~l~~~~~~  148 (158)
T PRK15467        141 YLASLTKQ  148 (158)
T ss_pred             HHHHhchh
Confidence            99987753

>cd01894 EngA1 EngA1 subfamily

Probab=99.92  E-value=3.1e-24  Score=141.80  Aligned_cols=146  Identities=18%  Similarity=0.142  Sum_probs=99.6

Q ss_pred             EEEcCCCCCHHHHHHHHHhCcC--CCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhc--------cchhhhcCC
Q 030364           14 VLLGDMGTGKTSLVLRFVKGQF--FDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHS--------LAPMYYRGA   83 (178)
Q Consensus        14 ~v~G~~~~GKStl~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~--------~~~~~~~~~   83 (178)
                      +++|.+|+|||||+++|.+...  .... +..+.+........++  ..+.+||+||...+..        .....+..+
T Consensus         1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~-~~~t~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~   77 (157)
T cd01894           1 AIVGRPNVGKSTLFNRLTGRRDAIVEDT-PGVTRDRIYGEAEWGG--REFILIDTGGIEPDDEGISKEIREQAELAIEEA   77 (157)
T ss_pred             CccCCCCCCHHHHHHHHhCCcEEeecCC-CCceeCceeEEEEECC--eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhC
Confidence            4799999999999999997642  2222 2222223333333444  5688999999866443        334567889


Q ss_pred             cEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCC-eEEEEeCCCCCCHHH
Q 030364           84 AAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGL-SFLETSAKSAHNVNE  162 (178)
Q Consensus        84 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~  162 (178)
                      |++++|+|+.++.+.... .+.+.+..   .+.|+++|+||+|+......     .......+. +++++|+++|.|+++
T Consensus        78 d~ii~v~d~~~~~~~~~~-~~~~~~~~---~~~piiiv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~Sa~~~~gv~~  148 (157)
T cd01894          78 DVILFVVDGREGLTPADE-EIAKYLRK---SKKPVILVVNKVDNIKEEDE-----AAEFYSLGFGEPIPISAEHGRGIGD  148 (157)
T ss_pred             CEEEEEEeccccCCccHH-HHHHHHHh---cCCCEEEEEECcccCChHHH-----HHHHHhcCCCCeEEEecccCCCHHH
Confidence            999999999875444332 22233332   25899999999998764332     122233555 889999999999999


Q ss_pred             HHHHHHhhc
Q 030364          163 LFYEIGDCT  171 (178)
Q Consensus       163 ~~~~l~~~i  171 (178)
                      ++++|++.+
T Consensus       149 l~~~l~~~~  157 (157)
T cd01894         149 LLDAILELL  157 (157)
T ss_pred             HHHHHHhhC
Confidence            999998764

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>TIGR01393 lepA GTP-binding protein LepA

Probab=99.92  E-value=1.6e-23  Score=163.04  Aligned_cols=159  Identities=16%  Similarity=0.173  Sum_probs=116.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCc-------CCCCccC------ceeeeEEEEEE--Ee---CCeEEEEEEEeCCCchh
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVKGQ-------FFDFQES------TIGAAFFTQVL--SL---NEVTIKFDIWDTAGQER   71 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~~~-------~~~~~~~------~~~~~~~~~~~--~~---~~~~~~~~i~d~~g~~~   71 (178)
                      ..+++++|+.++|||||+++|+...       +...+..      ..+.+......  .+   ++..+.+.+|||||+.+
T Consensus         3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d   82 (595)
T TIGR01393         3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD   82 (595)
T ss_pred             eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence            5689999999999999999998742       1111211      22333333322  22   46678999999999999


Q ss_pred             hhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCC---e
Q 030364           72 YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGL---S  148 (178)
Q Consensus        72 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~---~  148 (178)
                      |...+..+++.+|++++|+|++++.+......|...+.    .+.|+++++||+|+....  ......++.+.+++   .
T Consensus        83 F~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~----~~ipiIiViNKiDl~~~~--~~~~~~el~~~lg~~~~~  156 (595)
T TIGR01393        83 FSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE----NDLEIIPVINKIDLPSAD--PERVKKEIEEVIGLDASE  156 (595)
T ss_pred             HHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH----cCCCEEEEEECcCCCccC--HHHHHHHHHHHhCCCcce
Confidence            99999999999999999999998766665555544332    367899999999986432  12223445555555   4


Q ss_pred             EEEEeCCCCCCHHHHHHHHHhhcccc
Q 030364          149 FLETSAKSAHNVNELFYEIGDCTECF  174 (178)
Q Consensus       149 ~~~~Sa~~~~~i~~~~~~l~~~i~~~  174 (178)
                      ++.+||++|.|++++|++|.+.+...
T Consensus       157 vi~vSAktG~GI~~Lle~I~~~lp~p  182 (595)
T TIGR01393       157 AILASAKTGIGIEEILEAIVKRVPPP  182 (595)
T ss_pred             EEEeeccCCCCHHHHHHHHHHhCCCC
Confidence            89999999999999999999887654

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.92  E-value=5.3e-24  Score=162.75  Aligned_cols=154  Identities=22%  Similarity=0.188  Sum_probs=107.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCcCC-CCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchh--------hhccchhhh
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVKGQFF-DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER--------YHSLAPMYY   80 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~--------~~~~~~~~~   80 (178)
                      ..+|+++|.+|||||||+|+|++.... ....+..+.+.......+++.  .+.+|||||.+.        +......++
T Consensus        38 ~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~  115 (472)
T PRK03003         38 LPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGR--RFTVVDTGGWEPDAKGLQASVAEQAEVAM  115 (472)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCc--EEEEEeCCCcCCcchhHHHHHHHHHHHHH
Confidence            468999999999999999999987642 223333333444444455553  577999999752        334456678


Q ss_pred             cCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCH
Q 030364           81 RGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNV  160 (178)
Q Consensus        81 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  160 (178)
                      +.+|++++|+|++++.++.. ..+...+..   .+.|+++|+||+|+....   .+....+....+ ..+++||++|.|+
T Consensus       116 ~~aD~il~VvD~~~~~s~~~-~~i~~~l~~---~~~piilV~NK~Dl~~~~---~~~~~~~~~g~~-~~~~iSA~~g~gi  187 (472)
T PRK03003        116 RTADAVLFVVDATVGATATD-EAVARVLRR---SGKPVILAANKVDDERGE---ADAAALWSLGLG-EPHPVSALHGRGV  187 (472)
T ss_pred             HhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECccCCccc---hhhHHHHhcCCC-CeEEEEcCCCCCc
Confidence            99999999999998755433 233344433   478999999999986422   122222322233 3479999999999


Q ss_pred             HHHHHHHHhhccc
Q 030364          161 NELFYEIGDCTEC  173 (178)
Q Consensus       161 ~~~~~~l~~~i~~  173 (178)
                      +++|++|++.+..
T Consensus       188 ~eL~~~i~~~l~~  200 (472)
T PRK03003        188 GDLLDAVLAALPE  200 (472)
T ss_pred             HHHHHHHHhhccc
Confidence            9999999988754

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=99.92  E-value=6.6e-24  Score=160.87  Aligned_cols=149  Identities=21%  Similarity=0.216  Sum_probs=110.3

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCcCC-CCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhcc--------chhh
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFF-DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSL--------APMY   79 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~--------~~~~   79 (178)
                      ..++|+++|.+|+|||||+|+|++.... ....+..+.+.....+.+++  ..+.+|||||...+...        ...+
T Consensus       214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~i~l~DT~G~~~~~~~ie~~gi~~~~~~  291 (449)
T PRK05291        214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDG--IPLRLIDTAGIRETDDEVEKIGIERSREA  291 (449)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECC--eEEEEEeCCCCCCCccHHHHHHHHHHHHH
Confidence            3589999999999999999999987642 22333344444455556665  45789999998654322        2336


Q ss_pred             hcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCC
Q 030364           80 YRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHN  159 (178)
Q Consensus        80 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  159 (178)
                      +..+|++++|+|++++.+++....|..      ..+.|+++|+||+|+.......        ...+.+++++||++|.|
T Consensus       292 ~~~aD~il~VvD~s~~~s~~~~~~l~~------~~~~piiiV~NK~DL~~~~~~~--------~~~~~~~i~iSAktg~G  357 (449)
T PRK05291        292 IEEADLVLLVLDASEPLTEEDDEILEE------LKDKPVIVVLNKADLTGEIDLE--------EENGKPVIRISAKTGEG  357 (449)
T ss_pred             HHhCCEEEEEecCCCCCChhHHHHHHh------cCCCCcEEEEEhhhccccchhh--------hccCCceEEEEeeCCCC
Confidence            789999999999999877765433322      3578999999999986533221        33567899999999999


Q ss_pred             HHHHHHHHHhhccc
Q 030364          160 VNELFYEIGDCTEC  173 (178)
Q Consensus       160 i~~~~~~l~~~i~~  173 (178)
                      +++++++|.+.+..
T Consensus       358 I~~L~~~L~~~l~~  371 (449)
T PRK05291        358 IDELREAIKELAFG  371 (449)
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999988754

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=99.92  E-value=1.3e-23  Score=158.91  Aligned_cols=162  Identities=19%  Similarity=0.137  Sum_probs=109.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhh----h---ccchhhhcCC
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERY----H---SLAPMYYRGA   83 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~----~---~~~~~~~~~~   83 (178)
                      ..|+++|.||||||||+++|++.+..-...+.++.......+.+++  ..+.+||+||....    .   ......+..+
T Consensus       160 adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~--~~f~laDtPGliegas~g~gLg~~fLrhiera  237 (500)
T PRK12296        160 ADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGD--TRFTVADVPGLIPGASEGKGLGLDFLRHIERC  237 (500)
T ss_pred             ceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECC--eEEEEEECCCCccccchhhHHHHHHHHHHHhc
Confidence            4799999999999999999997654321222233333333444444  57889999995311    1   1122346789


Q ss_pred             cEEEEEEECCC----HhHHHHHHHHHHHHHHhC-----------CCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCe
Q 030364           84 AAAVVVYDITS----MDSFERAKKWVQELQRQG-----------NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLS  148 (178)
Q Consensus        84 d~~i~v~d~~~----~~s~~~~~~~~~~~~~~~-----------~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~  148 (178)
                      |++++|+|+++    ++.++.+..+..++..+.           ..+.|++||+||+|+++...... .........+++
T Consensus       238 dvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e-~l~~~l~~~g~~  316 (500)
T PRK12296        238 AVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAE-FVRPELEARGWP  316 (500)
T ss_pred             CEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHH-HHHHHHHHcCCe
Confidence            99999999985    234555555555554332           24789999999999975443322 222233345789


Q ss_pred             EEEEeCCCCCCHHHHHHHHHhhccccc
Q 030364          149 FLETSAKSAHNVNELFYEIGDCTECFS  175 (178)
Q Consensus       149 ~~~~Sa~~~~~i~~~~~~l~~~i~~~~  175 (178)
                      ++++||+++.|+++++.+|.+.+...+
T Consensus       317 Vf~ISA~tgeGLdEL~~~L~ell~~~r  343 (500)
T PRK12296        317 VFEVSAASREGLRELSFALAELVEEAR  343 (500)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHhhh
Confidence            999999999999999999999887654

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=99.92  E-value=3e-23  Score=142.04  Aligned_cols=159  Identities=16%  Similarity=0.165  Sum_probs=106.8

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCc----------hhhhccc
Q 030364            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ----------ERYHSLA   76 (178)
Q Consensus         7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~----------~~~~~~~   76 (178)
                      .+..++|+++|.+|+|||||++++.+..+...+.++.+.+........   ...+.+||+||.          +.+....
T Consensus        21 ~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~~~~   97 (196)
T PRK00454         21 PDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQKLI   97 (196)
T ss_pred             CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHHHHH
Confidence            345789999999999999999999987755555666555443333332   257889999994          3343444


Q ss_pred             hhhhcCC---cEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccC--HHHHHHHHHHcCCeEEE
Q 030364           77 PMYYRGA---AAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVK--NEEGELYAQENGLSFLE  151 (178)
Q Consensus        77 ~~~~~~~---d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~  151 (178)
                      ..+++.+   +++++++|.+++...... .+...+..   .+.|+++++||+|+....+..  .+...........++++
T Consensus        98 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~i~~~l~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~  173 (196)
T PRK00454         98 EEYLRTRENLKGVVLLIDSRHPLKELDL-QMIEWLKE---YGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVIL  173 (196)
T ss_pred             HHHHHhCccceEEEEEEecCCCCCHHHH-HHHHHHHH---cCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceEE
Confidence            4455544   678888998865433221 11122222   367899999999986543221  12233333334679999


Q ss_pred             EeCCCCCCHHHHHHHHHhhcc
Q 030364          152 TSAKSAHNVNELFYEIGDCTE  172 (178)
Q Consensus       152 ~Sa~~~~~i~~~~~~l~~~i~  172 (178)
                      +||+++.|++++++.|.+.+.
T Consensus       174 ~Sa~~~~gi~~l~~~i~~~~~  194 (196)
T PRK00454        174 FSSLKKQGIDELRAAIAKWLA  194 (196)
T ss_pred             EEcCCCCCHHHHHHHHHHHhc
Confidence            999999999999999987765

>PRK11058 GTPase HflX; Provisional

Probab=99.91  E-value=1.8e-23  Score=156.92  Aligned_cols=156  Identities=19%  Similarity=0.181  Sum_probs=109.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhh--hccc------hhhhcC
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERY--HSLA------PMYYRG   82 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~--~~~~------~~~~~~   82 (178)
                      .+|+++|.+|+|||||+|+|++........+..+.+.....+.+.+. ..+.+|||+|....  ...+      ...+..
T Consensus       198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~-~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~  276 (426)
T PRK11058        198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADV-GETVLADTVGFIRHLPHDLVAAFKATLQETRQ  276 (426)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCC-CeEEEEecCcccccCCHHHHHHHHHHHHHhhc
Confidence            58999999999999999999987654323333344444444555442 25679999997321  1112      233688


Q ss_pred             CcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCe-EEEEeCCCCCCHH
Q 030364           83 AAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLS-FLETSAKSAHNVN  161 (178)
Q Consensus        83 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~  161 (178)
                      +|++++|+|++++.+++.+..+...+......+.|+++|+||+|+.....   ....  ....+.+ ++.+||++|.|++
T Consensus       277 ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~---~~~~--~~~~~~~~~v~ISAktG~GId  351 (426)
T PRK11058        277 ATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFE---PRID--RDEENKPIRVWLSAQTGAGIP  351 (426)
T ss_pred             CCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchh---HHHH--HHhcCCCceEEEeCCCCCCHH
Confidence            99999999999998888776555555554445789999999999864211   1111  1123455 5889999999999


Q ss_pred             HHHHHHHhhcc
Q 030364          162 ELFYEIGDCTE  172 (178)
Q Consensus       162 ~~~~~l~~~i~  172 (178)
                      +++++|.+.+.
T Consensus       352 eL~e~I~~~l~  362 (426)
T PRK11058        352 LLFQALTERLS  362 (426)
T ss_pred             HHHHHHHHHhh
Confidence            99999998874

>KOG1673 consensus Ras GTPases [General function prediction only]

Probab=99.91  E-value=1.4e-23  Score=132.57  Aligned_cols=162  Identities=25%  Similarity=0.462  Sum_probs=142.0

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEE
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVV   88 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~   88 (178)
                      -.+||.++|.+..|||||+-++.++.+.+++..+.+.....+.+.+.+..+.+.+||.+|++++..+.+..-.++-+++|
T Consensus        19 Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlF   98 (205)
T KOG1673|consen   19 VSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAILF   98 (205)
T ss_pred             eEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEEE
Confidence            47899999999999999999999999988899999999999999999999999999999999999999999999999999


Q ss_pred             EEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccc-----cccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHH
Q 030364           89 VYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEK-----RKVKNEEGELYAQENGLSFLETSAKSAHNVNEL  163 (178)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~-----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~  163 (178)
                      +||++.++.+..+..|++..+.......| ++|++|.|..-.     .+....+++.+++-.+++.+.||+..+.|+..+
T Consensus        99 mFDLt~r~TLnSi~~WY~QAr~~NktAiP-ilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sINv~KI  177 (205)
T KOG1673|consen   99 MFDLTRRSTLNSIKEWYRQARGLNKTAIP-ILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSINVQKI  177 (205)
T ss_pred             EEecCchHHHHHHHHHHHHHhccCCccce-EEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeeccccccHHHH
Confidence            99999999999999999998876555566 678999996321     122234567788889999999999999999999


Q ss_pred             HHHHHhhc
Q 030364          164 FYEIGDCT  171 (178)
Q Consensus       164 ~~~l~~~i  171 (178)
                      |..+..++
T Consensus       178 FK~vlAkl  185 (205)
T KOG1673|consen  178 FKIVLAKL  185 (205)
T ss_pred             HHHHHHHH
Confidence            98776654

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.91  E-value=4.6e-23  Score=156.57  Aligned_cols=161  Identities=19%  Similarity=0.172  Sum_probs=107.4

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHHhCcCC-CCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhcc-----------
Q 030364            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFF-DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSL-----------   75 (178)
Q Consensus         8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~-----------   75 (178)
                      ...++|+++|.+|+|||||+++|++.... ....+..+.+.....+..++.  .+.+|||||.......           
T Consensus       170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~liDT~G~~~~~~~~~~~e~~~~~~  247 (429)
T TIGR03594       170 DGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGK--KYLLIDTAGIRRKGKVTEGVEKYSVLR  247 (429)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCc--EEEEEECCCccccccchhhHHHHHHHH
Confidence            34689999999999999999999976532 112222333333334444553  6779999997443322           


Q ss_pred             chhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHH----cCCeEEE
Q 030364           76 APMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQE----NGLSFLE  151 (178)
Q Consensus        76 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~----~~~~~~~  151 (178)
                      ...+++.+|++++|+|++++.+..... ++..+..   .+.|+++|+||+|+........+....+...    ..+++++
T Consensus       248 ~~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~~---~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vi~  323 (429)
T TIGR03594       248 TLKAIERADVVLLVLDATEGITEQDLR-IAGLILE---AGKALVIVVNKWDLVKDEKTREEFKKELRRKLPFLDFAPIVF  323 (429)
T ss_pred             HHHHHHhCCEEEEEEECCCCccHHHHH-HHHHHHH---cCCcEEEEEECcccCCCHHHHHHHHHHHHHhcccCCCCceEE
Confidence            124678999999999999876665542 3333333   3689999999999862111111111111111    2479999


Q ss_pred             EeCCCCCCHHHHHHHHHhhcccc
Q 030364          152 TSAKSAHNVNELFYEIGDCTECF  174 (178)
Q Consensus       152 ~Sa~~~~~i~~~~~~l~~~i~~~  174 (178)
                      +||++|.|++++|+++.+.+..+
T Consensus       324 ~SA~~g~~v~~l~~~i~~~~~~~  346 (429)
T TIGR03594       324 ISALTGQGVDKLLDAIDEVYENA  346 (429)
T ss_pred             EeCCCCCCHHHHHHHHHHHHHHh
Confidence            99999999999999998876644

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=99.91  E-value=4e-23  Score=142.05  Aligned_cols=161  Identities=14%  Similarity=0.103  Sum_probs=102.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCcCCC-CccCceeeeEEEEEE--Ee-------------------------C--C----
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVKGQFFD-FQESTIGAAFFTQVL--SL-------------------------N--E----   56 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~~~~~~--~~-------------------------~--~----   56 (178)
                      ++|+++|+.|+|||||+..+.+-.... ......+.+......  .+                         .  +    
T Consensus         1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (203)
T cd01888           1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK   80 (203)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence            479999999999999999996531111 000011111111000  00                         0  1    


Q ss_pred             eEEEEEEEeCCCchhhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccC--
Q 030364           57 VTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVK--  134 (178)
Q Consensus        57 ~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~--  134 (178)
                      ....+.|||+||++.+.......+..+|++++|+|++++.........+..+...  ...|+++++||+|+.......  
T Consensus        81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~--~~~~iiivvNK~Dl~~~~~~~~~  158 (203)
T cd01888          81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIM--GLKHIIIVQNKIDLVKEEQALEN  158 (203)
T ss_pred             cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHc--CCCcEEEEEEchhccCHHHHHHH
Confidence            1267889999999988887777888999999999999742111112222333222  224689999999986532211  


Q ss_pred             HHHHHHHHHH---cCCeEEEEeCCCCCCHHHHHHHHHhhccc
Q 030364          135 NEEGELYAQE---NGLSFLETSAKSAHNVNELFYEIGDCTEC  173 (178)
Q Consensus       135 ~~~~~~~~~~---~~~~~~~~Sa~~~~~i~~~~~~l~~~i~~  173 (178)
                      .+....+...   .+++++++||++|.|+++++++|.+.+..
T Consensus       159 ~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~  200 (203)
T cd01888         159 YEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPT  200 (203)
T ss_pred             HHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCC
Confidence            1222333332   25789999999999999999999987765

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=99.91  E-value=9.6e-23  Score=158.12  Aligned_cols=154  Identities=18%  Similarity=0.151  Sum_probs=109.4

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEE
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVV   88 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~   88 (178)
                      +..+|+++|++++|||||++++.+..+.....+..+.+.....+.+++. ..+.||||||++.|..++...+..+|++++
T Consensus        86 r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~-~~i~~iDTPGhe~F~~~r~rga~~aDiaIL  164 (587)
T TIGR00487        86 RPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG-KMITFLDTPGHEAFTSMRARGAKVTDIVVL  164 (587)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC-cEEEEEECCCCcchhhHHHhhhccCCEEEE
Confidence            4679999999999999999999988776544444444444444455432 267899999999999998888999999999


Q ss_pred             EEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHH-------HcC--CeEEEEeCCCCCC
Q 030364           89 VYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQ-------ENG--LSFLETSAKSAHN  159 (178)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~-------~~~--~~~~~~Sa~~~~~  159 (178)
                      |+|+++....... ..+....   ..+.|+++++||+|+++..   .+.......       .++  .+++++||++|.|
T Consensus       165 VVda~dgv~~qT~-e~i~~~~---~~~vPiIVviNKiDl~~~~---~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGeG  237 (587)
T TIGR00487       165 VVAADDGVMPQTI-EAISHAK---AANVPIIVAINKIDKPEAN---PDRVKQELSEYGLVPEDWGGDTIFVPVSALTGDG  237 (587)
T ss_pred             EEECCCCCCHhHH-HHHHHHH---HcCCCEEEEEECcccccCC---HHHHHHHHHHhhhhHHhcCCCceEEEEECCCCCC
Confidence            9999874221111 1122222   2478999999999986422   122222222       222  5799999999999


Q ss_pred             HHHHHHHHHhh
Q 030364          160 VNELFYEIGDC  170 (178)
Q Consensus       160 i~~~~~~l~~~  170 (178)
                      +++++++|...
T Consensus       238 I~eLl~~I~~~  248 (587)
T TIGR00487       238 IDELLDMILLQ  248 (587)
T ss_pred             hHHHHHhhhhh
Confidence            99999998653

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>cd04163 Era Era subfamily

Probab=99.91  E-value=8.1e-23  Score=136.02  Aligned_cols=157  Identities=17%  Similarity=0.084  Sum_probs=102.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhc--------cchhhhc
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHS--------LAPMYYR   81 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~--------~~~~~~~   81 (178)
                      ..+|+++|.+|+|||||++++.+........ .................+.+.+||+||......        .....+.
T Consensus         3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   81 (168)
T cd04163           3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSP-KPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALK   81 (168)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCceEeccC-CCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHH
Confidence            5789999999999999999999765432111 111111111122233346788999999643322        2344578


Q ss_pred             CCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHc-CCeEEEEeCCCCCCH
Q 030364           82 GAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQEN-GLSFLETSAKSAHNV  160 (178)
Q Consensus        82 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i  160 (178)
                      .+|++++|+|++++... ....+...+...   +.|+++++||+|+........+....+.... ..+++.+|++++.|+
T Consensus        82 ~~d~i~~v~d~~~~~~~-~~~~~~~~~~~~---~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~  157 (168)
T cd04163          82 DVDLVLFVVDASEPIGE-GDEFILELLKKS---KTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKGENV  157 (168)
T ss_pred             hCCEEEEEEECCCccCc-hHHHHHHHHHHh---CCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEeccCCCh
Confidence            89999999999986211 112223333332   6789999999998743332233334444444 368999999999999


Q ss_pred             HHHHHHHHhhc
Q 030364          161 NELFYEIGDCT  171 (178)
Q Consensus       161 ~~~~~~l~~~i  171 (178)
                      ++++++|.+.+
T Consensus       158 ~~l~~~l~~~~  168 (168)
T cd04163         158 DELLEEIVKYL  168 (168)
T ss_pred             HHHHHHHHhhC
Confidence            99999998753

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=99.91  E-value=5.4e-23  Score=138.89  Aligned_cols=149  Identities=15%  Similarity=0.201  Sum_probs=99.1

Q ss_pred             CCCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCch----------hhhcc
Q 030364            6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE----------RYHSL   75 (178)
Q Consensus         6 ~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~----------~~~~~   75 (178)
                      .+....+|+++|.+|+|||||++++.+..+...+.++.+.+........++   .+.+||+||..          .+...
T Consensus        14 ~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~   90 (179)
T TIGR03598        14 PPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQKL   90 (179)
T ss_pred             CCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHHH
Confidence            345688999999999999999999998765444555555544444344333   57899999942          23333


Q ss_pred             chhhhc---CCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccc--CHHHHHHHHHHcC--Ce
Q 030364           76 APMYYR---GAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKV--KNEEGELYAQENG--LS  148 (178)
Q Consensus        76 ~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~--~~~~~~~~~~~~~--~~  148 (178)
                      ...+++   .++++++|+|++++-+.... .++..+..   .+.|+++++||+|+..+.+.  ..++.....+..+  .+
T Consensus        91 ~~~~l~~~~~~~~ii~vvd~~~~~~~~~~-~~~~~~~~---~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~~  166 (179)
T TIGR03598        91 IEEYLEKRENLKGVVLLMDIRHPLKELDL-EMLEWLRE---RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDPS  166 (179)
T ss_pred             HHHHHHhChhhcEEEEEecCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCCc
Confidence            344554   35799999999875444443 22333332   36889999999998643322  1233334444443  58


Q ss_pred             EEEEeCCCCCCHH
Q 030364          149 FLETSAKSAHNVN  161 (178)
Q Consensus       149 ~~~~Sa~~~~~i~  161 (178)
                      ++++||++|+|++
T Consensus       167 v~~~Sa~~g~gi~  179 (179)
T TIGR03598       167 VQLFSSLKKTGID  179 (179)
T ss_pred             eEEEECCCCCCCC
Confidence            9999999999974

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.90  E-value=2.2e-24  Score=134.50  Aligned_cols=162  Identities=21%  Similarity=0.308  Sum_probs=123.1

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEE
Q 030364            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA   86 (178)
Q Consensus         7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~   86 (178)
                      ++..++|+++|..|+||+|++.++.-++... ..|+.+...  .  ++..++.++++||.+|+...+..|..|+.+.|++
T Consensus        15 ~e~e~rililgldGaGkttIlyrlqvgevvt-tkPtigfnv--e--~v~yKNLk~~vwdLggqtSirPyWRcYy~dt~av   89 (182)
T KOG0072|consen   15 PEREMRILILGLDGAGKTTILYRLQVGEVVT-TKPTIGFNV--E--TVPYKNLKFQVWDLGGQTSIRPYWRCYYADTDAV   89 (182)
T ss_pred             CccceEEEEeeccCCCeeEEEEEcccCcccc-cCCCCCcCc--c--ccccccccceeeEccCcccccHHHHHHhcccceE
Confidence            3478999999999999999999988776654 445555332  2  2333668899999999999999999999999999


Q ss_pred             EEEEECCCHhHHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCccccccC---HHHHHHHHHHcCCeEEEEeCCCCCCHHH
Q 030364           87 VVVYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEEKRKVK---NEEGELYAQENGLSFLETSAKSAHNVNE  162 (178)
Q Consensus        87 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~---~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  162 (178)
                      |+|+|.+|++...... .++.++.+....+..++|++||+|.+......   ......-.+..-+.++++||.+|+|++.
T Consensus        90 IyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld~  169 (182)
T KOG0072|consen   90 IYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLDP  169 (182)
T ss_pred             EEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhheeEEEeeccccccCCcH
Confidence            9999999987666544 44455555556788899999999986532211   1111222233447999999999999999


Q ss_pred             HHHHHHhhccc
Q 030364          163 LFYEIGDCTEC  173 (178)
Q Consensus       163 ~~~~l~~~i~~  173 (178)
                      +.+||.+.++.
T Consensus       170 ~~DWL~~~l~~  180 (182)
T KOG0072|consen  170 AMDWLQRPLKS  180 (182)
T ss_pred             HHHHHHHHHhc
Confidence            99999988764

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=99.90  E-value=1.2e-22  Score=158.08  Aligned_cols=155  Identities=19%  Similarity=0.206  Sum_probs=113.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC---cCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEE
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVKG---QFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i   87 (178)
                      +.|+++|++++|||||+++|++.   .+.++..+..+.+.....+..++  ..+.+||+||++.|.......+.++|+++
T Consensus         1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI   78 (581)
T TIGR00475         1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL   78 (581)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence            47899999999999999999963   33333444555555455555555  67889999999999888888899999999


Q ss_pred             EEEECCC---HhHHHHHHHHHHHHHHhCCCCce-EEEEEeCCCCcccccc--CHHHHHHHHHHc----CCeEEEEeCCCC
Q 030364           88 VVYDITS---MDSFERAKKWVQELQRQGNPNLI-MFLVANKVDLEEKRKV--KNEEGELYAQEN----GLSFLETSAKSA  157 (178)
Q Consensus        88 ~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~-~ivv~nK~D~~~~~~~--~~~~~~~~~~~~----~~~~~~~Sa~~~  157 (178)
                      +|+|+++   +++.+.+    ..+..   .+.| +++++||+|+.+....  ..++...+....    +++++++||++|
T Consensus        79 LVVDa~~G~~~qT~ehl----~il~~---lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG  151 (581)
T TIGR00475        79 LVVDADEGVMTQTGEHL----AVLDL---LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTG  151 (581)
T ss_pred             EEEECCCCCcHHHHHHH----HHHHH---cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCC
Confidence            9999998   3444333    22322   2566 9999999998654432  122344444443    579999999999


Q ss_pred             CCHHHHHHHHHhhcccc
Q 030364          158 HNVNELFYEIGDCTECF  174 (178)
Q Consensus       158 ~~i~~~~~~l~~~i~~~  174 (178)
                      .|+++++++|.+.+...
T Consensus       152 ~GI~eL~~~L~~l~~~~  168 (581)
T TIGR00475       152 QGIGELKKELKNLLESL  168 (581)
T ss_pred             CCchhHHHHHHHHHHhC
Confidence            99999999998776654

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=99.90  E-value=1.9e-22  Score=149.87  Aligned_cols=160  Identities=19%  Similarity=0.164  Sum_probs=111.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhh-------ccchhhhcCCc
Q 030364           12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYH-------SLAPMYYRGAA   84 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~-------~~~~~~~~~~d   84 (178)
                      .|+++|.||||||||+|+|++.+..-...|.++.....-.+...+ ...+.++|+||...-.       ......++.+|
T Consensus       161 dValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~-~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~rad  239 (390)
T PRK12298        161 DVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDD-ERSFVVADIPGLIEGASEGAGLGIRFLKHLERCR  239 (390)
T ss_pred             cEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCC-CcEEEEEeCCCccccccchhhHHHHHHHHHHhCC
Confidence            799999999999999999997664222222233333333344432 2357899999974311       11223578899


Q ss_pred             EEEEEEECC---CHhHHHHHHHHHHHHHHhC--CCCceEEEEEeCCCCccccccCHHHHHHHHHHcC--CeEEEEeCCCC
Q 030364           85 AAVVVYDIT---SMDSFERAKKWVQELQRQG--NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENG--LSFLETSAKSA  157 (178)
Q Consensus        85 ~~i~v~d~~---~~~s~~~~~~~~~~~~~~~--~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~  157 (178)
                      ++++|+|++   +.+.++....|.+.+....  ..+.|+++|+||+|+.....+ .+....+.+..+  .+++.+||+++
T Consensus       240 vlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el-~~~l~~l~~~~~~~~~Vi~ISA~tg  318 (390)
T PRK12298        240 VLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEA-EERAKAIVEALGWEGPVYLISAASG  318 (390)
T ss_pred             EEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHH-HHHHHHHHHHhCCCCCEEEEECCCC
Confidence            999999998   4566777777777776542  246899999999998654333 233334444434  47999999999


Q ss_pred             CCHHHHHHHHHhhccc
Q 030364          158 HNVNELFYEIGDCTEC  173 (178)
Q Consensus       158 ~~i~~~~~~l~~~i~~  173 (178)
                      .|+++++++|.+.+..
T Consensus       319 ~GIdeLl~~I~~~L~~  334 (390)
T PRK12298        319 LGVKELCWDLMTFIEE  334 (390)
T ss_pred             cCHHHHHHHHHHHhhh
Confidence            9999999999988754

>PRK00089 era GTPase Era; Reviewed

Probab=99.90  E-value=1.5e-22  Score=146.58  Aligned_cols=159  Identities=17%  Similarity=0.093  Sum_probs=103.5

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhh--------ccchhhh
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYH--------SLAPMYY   80 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~--------~~~~~~~   80 (178)
                      +.-.|+++|.+|||||||+|+|++.+... ..+...++.............++.+|||||.....        ......+
T Consensus         4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~-vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~   82 (292)
T PRK00089          4 KSGFVAIVGRPNVGKSTLLNALVGQKISI-VSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSL   82 (292)
T ss_pred             eeEEEEEECCCCCCHHHHHHHHhCCceee-cCCCCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHHH
Confidence            35579999999999999999999876532 12222222211111111123678899999964322        2234467


Q ss_pred             cCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcC-CeEEEEeCCCCCC
Q 030364           81 RGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENG-LSFLETSAKSAHN  159 (178)
Q Consensus        81 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~  159 (178)
                      ..+|++++|+|++++... .....+..+.   ..+.|+++|+||+|+.............+.+..+ .+++++||+++.|
T Consensus        83 ~~~D~il~vvd~~~~~~~-~~~~i~~~l~---~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~g  158 (292)
T PRK00089         83 KDVDLVLFVVDADEKIGP-GDEFILEKLK---KVKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKGDN  158 (292)
T ss_pred             hcCCEEEEEEeCCCCCCh-hHHHHHHHHh---hcCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCCC
Confidence            889999999999983211 1122222232   2368999999999987332222233444444333 6899999999999


Q ss_pred             HHHHHHHHHhhcc
Q 030364          160 VNELFYEIGDCTE  172 (178)
Q Consensus       160 i~~~~~~l~~~i~  172 (178)
                      +++++++|.+.+.
T Consensus       159 v~~L~~~L~~~l~  171 (292)
T PRK00089        159 VDELLDVIAKYLP  171 (292)
T ss_pred             HHHHHHHHHHhCC
Confidence            9999999998874

>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.90  E-value=8.8e-24  Score=135.78  Aligned_cols=164  Identities=22%  Similarity=0.242  Sum_probs=123.1

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHHhCcC---C----CCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhh
Q 030364            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQF---F----DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY   79 (178)
Q Consensus         7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~~---~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~   79 (178)
                      ++..+.|+++|+.++|||||+.++.....   .    ....++.+..  ...+.+.  ...+.+||.+|++..+++|..|
T Consensus        14 ~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLn--ig~i~v~--~~~l~fwdlgGQe~lrSlw~~y   89 (197)
T KOG0076|consen   14 KKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLN--IGTIEVC--NAPLSFWDLGGQESLRSLWKKY   89 (197)
T ss_pred             hhhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeeccccee--ecceeec--cceeEEEEcCChHHHHHHHHHH
Confidence            44588999999999999999988764221   1    1122333322  2333333  4567799999999999999999


Q ss_pred             hcCCcEEEEEEECCCHhHHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCccccccCHHHH----HHHHHHcCCeEEEEeC
Q 030364           80 YRGAAAAVVVYDITSMDSFERAKKWVQELQRQ-GNPNLIMFLVANKVDLEEKRKVKNEEG----ELYAQENGLSFLETSA  154 (178)
Q Consensus        80 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~ivv~nK~D~~~~~~~~~~~~----~~~~~~~~~~~~~~Sa  154 (178)
                      |..++++|+++|+++++-|+.....++.+... ...+.|+++.+||.|+.+..+..+...    ........+++.++||
T Consensus        90 Y~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~~~~e~~~~rd~~~~pvSa  169 (197)
T KOG0076|consen   90 YWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVFGLAELIPRRDNPFQPVSA  169 (197)
T ss_pred             HHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHHHHhhhhhhcCCccCccccchh
Confidence            99999999999999999999988777776554 358999999999999976544322111    1112234579999999


Q ss_pred             CCCCCHHHHHHHHHhhcccc
Q 030364          155 KSAHNVNELFYEIGDCTECF  174 (178)
Q Consensus       155 ~~~~~i~~~~~~l~~~i~~~  174 (178)
                      ++|+||++...|++..+.+.
T Consensus       170 l~gegv~egi~w~v~~~~kn  189 (197)
T KOG0076|consen  170 LTGEGVKEGIEWLVKKLEKN  189 (197)
T ss_pred             hhcccHHHHHHHHHHHHhhc
Confidence            99999999999999988765

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=99.90  E-value=3.3e-23  Score=140.94  Aligned_cols=159  Identities=21%  Similarity=0.208  Sum_probs=108.1

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCcCCCC------------------ccCceeeeEEEEEEEeCCeEEEEEEEeCCCch
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDF------------------QESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE   70 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~   70 (178)
                      +.++|+++|+.++|||||+++|........                  .....+................+.++|+||+.
T Consensus         2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~   81 (188)
T PF00009_consen    2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE   81 (188)
T ss_dssp             TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred             CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence            478999999999999999999986442110                  00111112222222212445678899999999


Q ss_pred             hhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccc--cCHHHHHHHHHHc---
Q 030364           71 RYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRK--VKNEEGELYAQEN---  145 (178)
Q Consensus        71 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~--~~~~~~~~~~~~~---  145 (178)
                      .|.......+..+|++|+|+|+.++-.. .....+..+...   +.|+++++||+|+...+.  ...+....+.+..   
T Consensus        82 ~f~~~~~~~~~~~D~ailvVda~~g~~~-~~~~~l~~~~~~---~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~~~  157 (188)
T PF00009_consen   82 DFIKEMIRGLRQADIAILVVDANDGIQP-QTEEHLKILREL---GIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYGEN  157 (188)
T ss_dssp             HHHHHHHHHHTTSSEEEEEEETTTBSTH-HHHHHHHHHHHT---T-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTTST
T ss_pred             ceeecccceecccccceeeeeccccccc-cccccccccccc---ccceEEeeeeccchhhhHHHHHHHHHHHhccccccC
Confidence            9988888889999999999999975332 233444445444   677999999999873221  1111122333322   


Q ss_pred             ---CCeEEEEeCCCCCCHHHHHHHHHhhc
Q 030364          146 ---GLSFLETSAKSAHNVNELFYEIGDCT  171 (178)
Q Consensus       146 ---~~~~~~~Sa~~~~~i~~~~~~l~~~i  171 (178)
                         .++++.+||++|.|++++++.|.+.+
T Consensus       158 ~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~  186 (188)
T PF00009_consen  158 GEEIVPVIPISALTGDGIDELLEALVELL  186 (188)
T ss_dssp             TTSTEEEEEEBTTTTBTHHHHHHHHHHHS
T ss_pred             ccccceEEEEecCCCCCHHHHHHHHHHhC
Confidence               35899999999999999999998875

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>CHL00189 infB translation initiation factor 2; Provisional

Probab=99.90  E-value=2.1e-22  Score=158.54  Aligned_cols=160  Identities=18%  Similarity=0.214  Sum_probs=110.7

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceee--eEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcE
Q 030364            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGA--AFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAA   85 (178)
Q Consensus         8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~   85 (178)
                      .+..+|+++|++++|||||+++|....+.....+..+.  ..+...+..++..+.+.||||||++.|..++..++..+|+
T Consensus       242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDi  321 (742)
T CHL00189        242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDI  321 (742)
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCE
Confidence            35679999999999999999999987665433322222  2222233334456889999999999999999999999999


Q ss_pred             EEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccC-HHHHHH---HHHHcC--CeEEEEeCCCCCC
Q 030364           86 AVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVK-NEEGEL---YAQENG--LSFLETSAKSAHN  159 (178)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~-~~~~~~---~~~~~~--~~~~~~Sa~~~~~  159 (178)
                      +|+|+|++++....... .+..+.   ..+.|+++++||+|+....... ..+...   +...++  ++++++||++|.|
T Consensus       322 aILVVDA~dGv~~QT~E-~I~~~k---~~~iPiIVViNKiDl~~~~~e~v~~eL~~~~ll~e~~g~~vpvv~VSAktG~G  397 (742)
T CHL00189        322 AILIIAADDGVKPQTIE-AINYIQ---AANVPIIVAINKIDKANANTERIKQQLAKYNLIPEKWGGDTPMIPISASQGTN  397 (742)
T ss_pred             EEEEEECcCCCChhhHH-HHHHHH---hcCceEEEEEECCCccccCHHHHHHHHHHhccchHhhCCCceEEEEECCCCCC
Confidence            99999998743222211 112222   3478999999999986532100 011111   122233  6899999999999


Q ss_pred             HHHHHHHHHhhc
Q 030364          160 VNELFYEIGDCT  171 (178)
Q Consensus       160 i~~~~~~l~~~i  171 (178)
                      +++++++|....
T Consensus       398 IdeLle~I~~l~  409 (742)
T CHL00189        398 IDKLLETILLLA  409 (742)
T ss_pred             HHHHHHhhhhhh
Confidence            999999998754

>cd01895 EngA2 EngA2 subfamily

Probab=99.90  E-value=8.2e-22  Score=132.09  Aligned_cols=155  Identities=19%  Similarity=0.185  Sum_probs=101.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCcCCC-CccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhc-----------cch
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVKGQFFD-FQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHS-----------LAP   77 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~-----------~~~   77 (178)
                      .++|+++|.+|+|||||++++.+..... ...+.............++.  .+.+||+||......           ...
T Consensus         2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~iiDtpG~~~~~~~~~~~e~~~~~~~~   79 (174)
T cd01895           2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGK--KYTLIDTAGIRRKGKVEEGIEKYSVLRTL   79 (174)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCe--eEEEEECCCCccccchhccHHHHHHHHHH
Confidence            5789999999999999999999865321 12222222222333444543  467999999643211           112


Q ss_pred             hhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHH-HHHHHHHc----CCeEEEE
Q 030364           78 MYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEE-GELYAQEN----GLSFLET  152 (178)
Q Consensus        78 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~-~~~~~~~~----~~~~~~~  152 (178)
                      ..+..+|++++|+|++++.+.... .++..+..   .+.|+++++||+|+.......... ...+.+..    ..+++++
T Consensus        80 ~~~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (174)
T cd01895          80 KAIERADVVLLVIDATEGITEQDL-RIAGLILE---EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFI  155 (174)
T ss_pred             HHHhhcCeEEEEEeCCCCcchhHH-HHHHHHHh---cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEE
Confidence            346789999999999987665443 22233322   368999999999987643221121 12222222    3689999


Q ss_pred             eCCCCCCHHHHHHHHHhh
Q 030364          153 SAKSAHNVNELFYEIGDC  170 (178)
Q Consensus       153 Sa~~~~~i~~~~~~l~~~  170 (178)
                      ||+++.|++++++++.+.
T Consensus       156 Sa~~~~~i~~~~~~l~~~  173 (174)
T cd01895         156 SALTGQGVDKLFDAIDEV  173 (174)
T ss_pred             eccCCCCHHHHHHHHHHh
Confidence            999999999999998764

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=99.89  E-value=4.5e-22  Score=136.70  Aligned_cols=117  Identities=19%  Similarity=0.294  Sum_probs=88.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCC-cEEEEEE
Q 030364           12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGA-AAAVVVY   90 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~-d~~i~v~   90 (178)
                      +|+++|+++||||||+++|..+.+...+.++.. ..........+....+.+||+||+..+...+..+++.+ +++|+|+
T Consensus         2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~~~-~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~Vv   80 (203)
T cd04105           2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSIEP-NVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVV   80 (203)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccCcEee-cceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEE
Confidence            689999999999999999999887665544322 22221222123456788999999999988888889998 9999999


Q ss_pred             ECCCH-hHHHHHHHHHHHHHH---hCCCCceEEEEEeCCCCcc
Q 030364           91 DITSM-DSFERAKKWVQELQR---QGNPNLIMFLVANKVDLEE  129 (178)
Q Consensus        91 d~~~~-~s~~~~~~~~~~~~~---~~~~~~~~ivv~nK~D~~~  129 (178)
                      |+++. .++..+..++..+..   ...++.|+++++||+|+..
T Consensus        81 D~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~  123 (203)
T cd04105          81 DSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFT  123 (203)
T ss_pred             ECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcc
Confidence            99987 677776666555432   2236899999999999854

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=99.89  E-value=3.2e-22  Score=158.75  Aligned_cols=154  Identities=21%  Similarity=0.210  Sum_probs=109.9

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEE
Q 030364            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (178)
Q Consensus         8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i   87 (178)
                      .+...|+++|+.++|||||+++|....+.....+..+.+.....+.+++  ..+.||||||+..|..++...+..+|++|
T Consensus       288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPGhe~F~~m~~rga~~aDiaI  365 (787)
T PRK05306        288 PRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPGHEAFTAMRARGAQVTDIVV  365 (787)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCCCccchhHHHhhhhhCCEEE
Confidence            4578999999999999999999988776544333333333333444444  56889999999999999988899999999


Q ss_pred             EEEECCCH---hHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccc--cCHHH--HHHHHHHcC--CeEEEEeCCCCC
Q 030364           88 VVYDITSM---DSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRK--VKNEE--GELYAQENG--LSFLETSAKSAH  158 (178)
Q Consensus        88 ~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~--~~~~~--~~~~~~~~~--~~~~~~Sa~~~~  158 (178)
                      +|+|+++.   ++.+.+    ....   ..+.|++|++||+|+.+...  +..+.  ...++..++  ++++++||++|.
T Consensus       366 LVVdAddGv~~qT~e~i----~~a~---~~~vPiIVviNKiDl~~a~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~  438 (787)
T PRK05306        366 LVVAADDGVMPQTIEAI----NHAK---AAGVPIIVAINKIDKPGANPDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGE  438 (787)
T ss_pred             EEEECCCCCCHhHHHHH----HHHH---hcCCcEEEEEECccccccCHHHHHHHHHHhcccHHHhCCCceEEEEeCCCCC
Confidence            99999874   333221    2222   34789999999999865321  11110  011223333  789999999999


Q ss_pred             CHHHHHHHHHhh
Q 030364          159 NVNELFYEIGDC  170 (178)
Q Consensus       159 ~i~~~~~~l~~~  170 (178)
                      |+++++++|...
T Consensus       439 GI~eLle~I~~~  450 (787)
T PRK05306        439 GIDELLEAILLQ  450 (787)
T ss_pred             CchHHHHhhhhh
Confidence            999999999754

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=99.89  E-value=7.6e-22  Score=157.13  Aligned_cols=153  Identities=14%  Similarity=0.188  Sum_probs=114.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhcc----------chhh
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSL----------APMY   79 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~----------~~~~   79 (178)
                      .++|+++|+||+|||||+|++++....  .....+.+...+...+.....++.+||+||...+...          ...+
T Consensus         3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~--vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~   80 (772)
T PRK09554          3 KLTIGLIGNPNSGKTTLFNQLTGARQR--VGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY   80 (772)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCCCCc--cCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHH
Confidence            578999999999999999999976542  3344555655555555556677889999998665432          1123


Q ss_pred             --hcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCC
Q 030364           80 --YRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSA  157 (178)
Q Consensus        80 --~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  157 (178)
                        ...+|++++|+|+++.+..   ..+...+.+.   +.|+++++||+|+.+.+.+ ......+.+.++++++++|+++|
T Consensus        81 l~~~~aD~vI~VvDat~ler~---l~l~~ql~e~---giPvIvVlNK~Dl~~~~~i-~id~~~L~~~LG~pVvpiSA~~g  153 (772)
T PRK09554         81 ILSGDADLLINVVDASNLERN---LYLTLQLLEL---GIPCIVALNMLDIAEKQNI-RIDIDALSARLGCPVIPLVSTRG  153 (772)
T ss_pred             HhccCCCEEEEEecCCcchhh---HHHHHHHHHc---CCCEEEEEEchhhhhccCc-HHHHHHHHHHhCCCEEEEEeecC
Confidence              2478999999999985432   2334444443   6899999999998755444 34567778889999999999999


Q ss_pred             CCHHHHHHHHHhhc
Q 030364          158 HNVNELFYEIGDCT  171 (178)
Q Consensus       158 ~~i~~~~~~l~~~i  171 (178)
                      +|++++++.+.+..
T Consensus       154 ~GIdeL~~~I~~~~  167 (772)
T PRK09554        154 RGIEALKLAIDRHQ  167 (772)
T ss_pred             CCHHHHHHHHHHhh
Confidence            99999999987754

>PRK05433 GTP-binding protein LepA; Provisional

Probab=99.89  E-value=9.6e-22  Score=153.32  Aligned_cols=162  Identities=17%  Similarity=0.182  Sum_probs=114.2

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHHhCc--CCC-----Cc------cCceeeeEEEEE--EEe---CCeEEEEEEEeCCC
Q 030364            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQ--FFD-----FQ------ESTIGAAFFTQV--LSL---NEVTIKFDIWDTAG   68 (178)
Q Consensus         7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~--~~~-----~~------~~~~~~~~~~~~--~~~---~~~~~~~~i~d~~g   68 (178)
                      .+...+++++|+.++|||||+.+|+...  +..     .+      +...+.+.....  +.+   ++..+.+.+|||||
T Consensus         4 ~~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPG   83 (600)
T PRK05433          4 MKNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPG   83 (600)
T ss_pred             cccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCC
Confidence            3446799999999999999999998632  111     00      112222322222  222   45578999999999


Q ss_pred             chhhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCC-
Q 030364           69 QERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGL-  147 (178)
Q Consensus        69 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-  147 (178)
                      +.+|...+..++..+|++++|+|++++........|....    ..+.|+++|+||+|+.....  ......+.+..++ 
T Consensus        84 h~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~----~~~lpiIvViNKiDl~~a~~--~~v~~ei~~~lg~~  157 (600)
T PRK05433         84 HVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL----ENDLEIIPVLNKIDLPAADP--ERVKQEIEDVIGID  157 (600)
T ss_pred             cHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH----HCCCCEEEEEECCCCCcccH--HHHHHHHHHHhCCC
Confidence            9999999999999999999999999865544444443322    23678999999999864321  2222334444555 


Q ss_pred             --eEEEEeCCCCCCHHHHHHHHHhhcccc
Q 030364          148 --SFLETSAKSAHNVNELFYEIGDCTECF  174 (178)
Q Consensus       148 --~~~~~Sa~~~~~i~~~~~~l~~~i~~~  174 (178)
                        .++.+||++|.|+++++++|.+.+...
T Consensus       158 ~~~vi~iSAktG~GI~~Ll~~I~~~lp~P  186 (600)
T PRK05433        158 ASDAVLVSAKTGIGIEEVLEAIVERIPPP  186 (600)
T ss_pred             cceEEEEecCCCCCHHHHHHHHHHhCccc
Confidence              489999999999999999999887654

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=99.89  E-value=4.5e-22  Score=155.02  Aligned_cols=146  Identities=19%  Similarity=0.190  Sum_probs=106.4

Q ss_pred             cCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhcc------chhhh--cCCcEEEE
Q 030364           17 GDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSL------APMYY--RGAAAAVV   88 (178)
Q Consensus        17 G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~------~~~~~--~~~d~~i~   88 (178)
                      |++|+|||||+|++++........+..+.+.....+.+++  .++++||+||+..+...      ...++  ..+|++++
T Consensus         1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~--~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~   78 (591)
T TIGR00437         1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQG--EDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN   78 (591)
T ss_pred             CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECC--eEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence            8999999999999998765433444444444444555555  35689999998766543      23333  37899999


Q ss_pred             EEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Q 030364           89 VYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIG  168 (178)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  168 (178)
                      |+|+++.+..   ..+..++.+   .+.|+++++||+|+.+...+. .+.+.+++..+++++++||++|+|++++++++.
T Consensus        79 VvDat~ler~---l~l~~ql~~---~~~PiIIVlNK~Dl~~~~~i~-~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i~  151 (591)
T TIGR00437        79 VVDASNLERN---LYLTLQLLE---LGIPMILALNLVDEAEKKGIR-IDEEKLEERLGVPVVPTSATEGRGIERLKDAIR  151 (591)
T ss_pred             EecCCcchhh---HHHHHHHHh---cCCCEEEEEehhHHHHhCCCh-hhHHHHHHHcCCCEEEEECCCCCCHHHHHHHHH
Confidence            9999974321   222233322   478999999999987655543 346778888899999999999999999999998


Q ss_pred             hhc
Q 030364          169 DCT  171 (178)
Q Consensus       169 ~~i  171 (178)
                      +..
T Consensus       152 ~~~  154 (591)
T TIGR00437       152 KAI  154 (591)
T ss_pred             HHh
Confidence            764

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]

Probab=99.89  E-value=1.6e-22  Score=125.84  Aligned_cols=163  Identities=21%  Similarity=0.258  Sum_probs=125.4

Q ss_pred             CCCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcE
Q 030364            6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAA   85 (178)
Q Consensus         6 ~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~   85 (178)
                      ...+++||+++|..++|||||+..|.+.. +.+..|+.+..  .+.+.+++ .+.+.+||.+|+...+..|.+|+.+.|+
T Consensus        13 ~t~rEirilllGldnAGKTT~LKqL~sED-~~hltpT~GFn--~k~v~~~g-~f~LnvwDiGGqr~IRpyWsNYyenvd~   88 (185)
T KOG0074|consen   13 RTRREIRILLLGLDNAGKTTFLKQLKSED-PRHLTPTNGFN--TKKVEYDG-TFHLNVWDIGGQRGIRPYWSNYYENVDG   88 (185)
T ss_pred             CCcceEEEEEEecCCCcchhHHHHHccCC-hhhccccCCcc--eEEEeecC-cEEEEEEecCCccccchhhhhhhhccce
Confidence            34679999999999999999999987544 34456666544  44555555 5789999999999999999999999999


Q ss_pred             EEEEEECCCHhHHHHHHHHHHHHHH-hCCCCceEEEEEeCCCCccccccCHHHH---HHHHHHcCCeEEEEeCCCCCCHH
Q 030364           86 AVVVYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEG---ELYAQENGLSFLETSAKSAHNVN  161 (178)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~-~~~~~~~~ivv~nK~D~~~~~~~~~~~~---~~~~~~~~~~~~~~Sa~~~~~i~  161 (178)
                      +|+|+|.+|..-|+++...+-++.. ......|+.+.+||.|+.-+..+.....   ....+...+.+-+|||.+++|+.
T Consensus        89 lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~eeia~klnl~~lrdRswhIq~csals~eg~~  168 (185)
T KOG0074|consen   89 LIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVEEIALKLNLAGLRDRSWHIQECSALSLEGST  168 (185)
T ss_pred             EEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchHHHHHhcchhhhhhceEEeeeCccccccCcc
Confidence            9999999998888887666655554 3457899999999999865443322211   11122234578899999999999


Q ss_pred             HHHHHHHhhcc
Q 030364          162 ELFYEIGDCTE  172 (178)
Q Consensus       162 ~~~~~l~~~i~  172 (178)
                      .-.+|+....+
T Consensus       169 dg~~wv~sn~~  179 (185)
T KOG0074|consen  169 DGSDWVQSNPE  179 (185)
T ss_pred             CcchhhhcCCC
Confidence            99999988776

>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.89  E-value=1.3e-22  Score=132.28  Aligned_cols=169  Identities=31%  Similarity=0.540  Sum_probs=147.2

Q ss_pred             CcccCCCCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhh
Q 030364            1 MARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYY   80 (178)
Q Consensus         1 m~~~~~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~   80 (178)
                      |..++.....++++++|..|.||||++++..-+++...+.++.+.........-+...+++..||+.|++.+......++
T Consensus         1 M~~p~~~~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyy   80 (216)
T KOG0096|consen    1 MTSPPQQGLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYY   80 (216)
T ss_pred             CCCCccccceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccE
Confidence            45555556789999999999999999999999999999999999998888877776689999999999999999999999


Q ss_pred             cCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCH
Q 030364           81 RGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNV  160 (178)
Q Consensus        81 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  160 (178)
                      -.....|++||+..+-.+.++.+|.+.+.+.+ .+.|+++.+||.|.....  ...+...+.+..++.|++.||+.+-|.
T Consensus        81 I~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~-~NiPiv~cGNKvDi~~r~--~k~k~v~~~rkknl~y~~iSaksn~Nf  157 (216)
T KOG0096|consen   81 IQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVR-ENIPIVLCGNKVDIKARK--VKAKPVSFHRKKNLQYYEISAKSNYNF  157 (216)
T ss_pred             EecceeEEEeeeeehhhhhcchHHHHHHHHHh-cCCCeeeeccceeccccc--cccccceeeecccceeEEeeccccccc
Confidence            99999999999999999999999999988764 469999999999976533  223445566677899999999999999


Q ss_pred             HHHHHHHHhhcc
Q 030364          161 NELFYEIGDCTE  172 (178)
Q Consensus       161 ~~~~~~l~~~i~  172 (178)
                      +.-|-|+.+.+.
T Consensus       158 ekPFl~LarKl~  169 (216)
T KOG0096|consen  158 ERPFLWLARKLT  169 (216)
T ss_pred             ccchHHHhhhhc
Confidence            999999998764

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.89  E-value=5.8e-22  Score=150.57  Aligned_cols=151  Identities=18%  Similarity=0.155  Sum_probs=105.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCcCC-CCccCceeeeEEEEEEEeCCeEEEEEEEeCCCc--------hhhhccchhhhcC
Q 030364           12 KLVLLGDMGTGKTSLVLRFVKGQFF-DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ--------ERYHSLAPMYYRG   82 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~--------~~~~~~~~~~~~~   82 (178)
                      +|+++|.+|+|||||+|+|.+.... ....+..+.+.......+++  ..+.+|||||.        ..+......+++.
T Consensus         1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~   78 (429)
T TIGR03594         1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGG--REFILIDTGGIEEDDDGLDKQIREQAEIAIEE   78 (429)
T ss_pred             CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECC--eEEEEEECCCCCCcchhHHHHHHHHHHHHHhh
Confidence            5899999999999999999987632 11223333334444445555  35789999996        3344556667899


Q ss_pred             CcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCC-eEEEEeCCCCCCHH
Q 030364           83 AAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGL-SFLETSAKSAHNVN  161 (178)
Q Consensus        83 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~  161 (178)
                      +|++++|+|+.++..... ..+...+.+   .+.|+++|+||+|.......    ...+ ..+++ +++++||.+|.|++
T Consensus        79 ad~vl~vvD~~~~~~~~d-~~i~~~l~~---~~~piilVvNK~D~~~~~~~----~~~~-~~lg~~~~~~vSa~~g~gv~  149 (429)
T TIGR03594        79 ADVILFVVDGREGLTPED-EEIAKWLRK---SGKPVILVANKIDGKKEDAV----AAEF-YSLGFGEPIPISAEHGRGIG  149 (429)
T ss_pred             CCEEEEEEeCCCCCCHHH-HHHHHHHHH---hCCCEEEEEECccCCccccc----HHHH-HhcCCCCeEEEeCCcCCChH
Confidence            999999999987543322 122233333   36889999999998653321    1222 34565 89999999999999


Q ss_pred             HHHHHHHhhccc
Q 030364          162 ELFYEIGDCTEC  173 (178)
Q Consensus       162 ~~~~~l~~~i~~  173 (178)
                      ++++++.+.+..
T Consensus       150 ~ll~~i~~~l~~  161 (429)
T TIGR03594       150 DLLDAILELLPE  161 (429)
T ss_pred             HHHHHHHHhcCc
Confidence            999999988754

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.89  E-value=1.4e-21  Score=148.71  Aligned_cols=148  Identities=20%  Similarity=0.160  Sum_probs=103.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCcCC-CCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchh--------hhccchhhhc
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVKGQFF-DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER--------YHSLAPMYYR   81 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~--------~~~~~~~~~~   81 (178)
                      .+|+++|.+|+|||||+|+|.+.... ....+..+.+.......+++  ..+.+|||||...        +......++.
T Consensus         2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~   79 (435)
T PRK00093          2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIE   79 (435)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence            58999999999999999999987642 11233333344444555555  6788999999865        2233455678


Q ss_pred             CCcEEEEEEECCCHhHHHH--HHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCC-eEEEEeCCCCC
Q 030364           82 GAAAAVVVYDITSMDSFER--AKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGL-SFLETSAKSAH  158 (178)
Q Consensus        82 ~~d~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~  158 (178)
                      .+|++++|+|+.++.+...  +..|   +..   .+.|+++|+||+|..+.    .....++ ...++ .++++||++|.
T Consensus        80 ~ad~il~vvd~~~~~~~~~~~~~~~---l~~---~~~piilv~NK~D~~~~----~~~~~~~-~~lg~~~~~~iSa~~g~  148 (435)
T PRK00093         80 EADVILFVVDGRAGLTPADEEIAKI---LRK---SNKPVILVVNKVDGPDE----EADAYEF-YSLGLGEPYPISAEHGR  148 (435)
T ss_pred             hCCEEEEEEECCCCCCHHHHHHHHH---HHH---cCCcEEEEEECccCccc----hhhHHHH-HhcCCCCCEEEEeeCCC
Confidence            9999999999987533322  2222   222   27899999999996541    1222222 23555 48999999999


Q ss_pred             CHHHHHHHHHhhc
Q 030364          159 NVNELFYEIGDCT  171 (178)
Q Consensus       159 ~i~~~~~~l~~~i  171 (178)
                      |++++++++.+..
T Consensus       149 gv~~l~~~I~~~~  161 (435)
T PRK00093        149 GIGDLLDAILEEL  161 (435)
T ss_pred             CHHHHHHHHHhhC
Confidence            9999999998743

>COG1159 Era GTPase [General function prediction only]

Probab=99.89  E-value=9.5e-22  Score=137.58  Aligned_cols=161  Identities=15%  Similarity=0.053  Sum_probs=108.9

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhh--------ccchhh
Q 030364            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYH--------SLAPMY   79 (178)
Q Consensus         8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~--------~~~~~~   79 (178)
                      .+.--|+++|.||+|||||+|++.+.+..- .++..+++......-+.....++.|+||||.....        ......
T Consensus         4 ~ksGfVaIiGrPNvGKSTLlN~l~G~KisI-vS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~s   82 (298)
T COG1159           4 FKSGFVAIIGRPNVGKSTLLNALVGQKISI-VSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSA   82 (298)
T ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCceEe-ecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHH
Confidence            345679999999999999999999877643 34444444444443333346789999999964332        233455


Q ss_pred             hcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHc-CCeEEEEeCCCCC
Q 030364           80 YRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQEN-GLSFLETSAKSAH  158 (178)
Q Consensus        80 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~  158 (178)
                      +.++|+++||+|++++-.-. -...++.+..   .+.|+++++||.|...+..........+.... ...++++||++|.
T Consensus        83 l~dvDlilfvvd~~~~~~~~-d~~il~~lk~---~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~g~  158 (298)
T COG1159          83 LKDVDLILFVVDADEGWGPG-DEFILEQLKK---TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALKGD  158 (298)
T ss_pred             hccCcEEEEEEeccccCCcc-HHHHHHHHhh---cCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeeccccC
Confidence            78999999999999732211 1222233333   36799999999998765542122222222222 2489999999999


Q ss_pred             CHHHHHHHHHhhccc
Q 030364          159 NVNELFYEIGDCTEC  173 (178)
Q Consensus       159 ~i~~~~~~l~~~i~~  173 (178)
                      |++.+.+.+...+.+
T Consensus       159 n~~~L~~~i~~~Lpe  173 (298)
T COG1159         159 NVDTLLEIIKEYLPE  173 (298)
T ss_pred             CHHHHHHHHHHhCCC
Confidence            999999999887764

>cd00880 Era_like Era (E

Probab=99.88  E-value=8.8e-22  Score=129.97  Aligned_cols=152  Identities=20%  Similarity=0.167  Sum_probs=102.8

Q ss_pred             EEcCCCCCHHHHHHHHHhCcCC-CCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhcc-------chhhhcCCcEE
Q 030364           15 LLGDMGTGKTSLVLRFVKGQFF-DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSL-------APMYYRGAAAA   86 (178)
Q Consensus        15 v~G~~~~GKStl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~-------~~~~~~~~d~~   86 (178)
                      ++|++|+|||||++++.+.... ....+............... ...+.+||+||.......       ...++..+|++
T Consensus         1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i   79 (163)
T cd00880           1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP-LGPVVLIDTPGIDEAGGLGREREELARRVLERADLI   79 (163)
T ss_pred             CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC-CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence            5899999999999999976543 22222222222222222221 457889999997655433       33477899999


Q ss_pred             EEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHH---HHHHHHHHcCCeEEEEeCCCCCCHHHH
Q 030364           87 VVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNE---EGELYAQENGLSFLETSAKSAHNVNEL  163 (178)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~---~~~~~~~~~~~~~~~~Sa~~~~~i~~~  163 (178)
                      ++|+|+++........ +.....   ..+.|+++++||+|+.........   .........+++++++|+.++.|++++
T Consensus        80 l~v~~~~~~~~~~~~~-~~~~~~---~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l  155 (163)
T cd00880          80 LFVVDADLRADEEEEK-LLELLR---ERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDEL  155 (163)
T ss_pred             EEEEeCCCCCCHHHHH-HHHHHH---hcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHH
Confidence            9999999877665543 222332   357889999999998654433222   122233345679999999999999999


Q ss_pred             HHHHHhhc
Q 030364          164 FYEIGDCT  171 (178)
Q Consensus       164 ~~~l~~~i  171 (178)
                      +++|.+.+
T Consensus       156 ~~~l~~~~  163 (163)
T cd00880         156 REALIEAL  163 (163)
T ss_pred             HHHHHhhC
Confidence            99998753

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.88  E-value=1e-21  Score=149.45  Aligned_cols=160  Identities=18%  Similarity=0.170  Sum_probs=105.8

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHHhCcC-CCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhc----------c-
Q 030364            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQF-FDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHS----------L-   75 (178)
Q Consensus         8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~----------~-   75 (178)
                      ...++|+++|.+|+|||||++++++... .....+..+.+.....+..++  ..+.+|||||......          . 
T Consensus       171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~lvDT~G~~~~~~~~~~~e~~~~~~  248 (435)
T PRK00093        171 DEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDG--QKYTLIDTAGIRRKGKVTEGVEKYSVIR  248 (435)
T ss_pred             ccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECC--eeEEEEECCCCCCCcchhhHHHHHHHHH
Confidence            3579999999999999999999997653 222223333333333334444  4567999999532211          1 


Q ss_pred             chhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHH----HHHcCCeEEE
Q 030364           76 APMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELY----AQENGLSFLE  151 (178)
Q Consensus        76 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~----~~~~~~~~~~  151 (178)
                      ...+++.+|++++|+|++++.+.... .++..+..   .+.|+++++||+|+.+.... .+....+    .....+++++
T Consensus       249 ~~~~~~~ad~~ilViD~~~~~~~~~~-~i~~~~~~---~~~~~ivv~NK~Dl~~~~~~-~~~~~~~~~~l~~~~~~~i~~  323 (435)
T PRK00093        249 TLKAIERADVVLLVIDATEGITEQDL-RIAGLALE---AGRALVIVVNKWDLVDEKTM-EEFKKELRRRLPFLDYAPIVF  323 (435)
T ss_pred             HHHHHHHCCEEEEEEeCCCCCCHHHH-HHHHHHHH---cCCcEEEEEECccCCCHHHH-HHHHHHHHHhcccccCCCEEE
Confidence            12467889999999999987665543 23333333   36889999999998643211 1111111    1223479999


Q ss_pred             EeCCCCCCHHHHHHHHHhhcccc
Q 030364          152 TSAKSAHNVNELFYEIGDCTECF  174 (178)
Q Consensus       152 ~Sa~~~~~i~~~~~~l~~~i~~~  174 (178)
                      +||++|.|++++++.+.+....+
T Consensus       324 ~SA~~~~gv~~l~~~i~~~~~~~  346 (435)
T PRK00093        324 ISALTGQGVDKLLEAIDEAYENA  346 (435)
T ss_pred             EeCCCCCCHHHHHHHHHHHHHHH
Confidence            99999999999999998866544

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=99.88  E-value=1e-21  Score=148.66  Aligned_cols=155  Identities=17%  Similarity=0.184  Sum_probs=103.2

Q ss_pred             CCCceeEEEEEcCCCCCHHHHHHHHHh--CcCCCC---------------------------ccCceeeeEEEEEEEeCC
Q 030364            6 NKNIQVKLVLLGDMGTGKTSLVLRFVK--GQFFDF---------------------------QESTIGAAFFTQVLSLNE   56 (178)
Q Consensus         6 ~~~~~~~i~v~G~~~~GKStl~~~l~~--~~~~~~---------------------------~~~~~~~~~~~~~~~~~~   56 (178)
                      .+.+.++|+++|+.++|||||+.+|+.  +.....                           .+...+.+.......+..
T Consensus         3 ~~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~   82 (426)
T TIGR00483         3 KEKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFET   82 (426)
T ss_pred             CCCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEcc
Confidence            356789999999999999999999986  221110                           011123333333344455


Q ss_pred             eEEEEEEEeCCCchhhhccchhhhcCCcEEEEEEECCCHhHHHHHH--HHHHHHHHhCCCCceEEEEEeCCCCccccc--
Q 030364           57 VTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAK--KWVQELQRQGNPNLIMFLVANKVDLEEKRK--  132 (178)
Q Consensus        57 ~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~--~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~--  132 (178)
                      ..+.+.+||+||++.|.......+..+|++++|+|+++++++...+  .++. +... ....|++|++||+|+.+..+  
T Consensus        83 ~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~-~~~~-~~~~~iIVviNK~Dl~~~~~~~  160 (426)
T TIGR00483        83 DKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAF-LART-LGINQLIVAINKMDSVNYDEEE  160 (426)
T ss_pred             CCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHH-HHHH-cCCCeEEEEEEChhccCccHHH
Confidence            5678899999999888776666778999999999999875432211  1112 2222 22357899999999864211  


Q ss_pred             --cCHHHHHHHHHHcC-----CeEEEEeCCCCCCHHH
Q 030364          133 --VKNEEGELYAQENG-----LSFLETSAKSAHNVNE  162 (178)
Q Consensus       133 --~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~  162 (178)
                        ....+...+++..+     ++++++||++|.|+++
T Consensus       161 ~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~  197 (426)
T TIGR00483       161 FEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIK  197 (426)
T ss_pred             HHHHHHHHHHHHHHcCCCcccceEEEeeccccccccc
Confidence              11234455555554     6899999999999986

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.88  E-value=3.9e-21  Score=153.27  Aligned_cols=156  Identities=21%  Similarity=0.175  Sum_probs=103.5

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHHhCcCCC-CccCceeeeEEEEEEEeCCeEEEEEEEeCCCchh--------hhccchh
Q 030364            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFD-FQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER--------YHSLAPM   78 (178)
Q Consensus         8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~--------~~~~~~~   78 (178)
                      ....+|+++|.+|+|||||+|+|++..... ...+..+.+.......+++  ..+.+|||||...        +......
T Consensus       273 ~~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~  350 (712)
T PRK09518        273 KAVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAG--TDFKLVDTGGWEADVEGIDSAIASQAQI  350 (712)
T ss_pred             ccCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECC--EEEEEEeCCCcCCCCccHHHHHHHHHHH
Confidence            345789999999999999999999765321 1223333333333334444  4678999999653        2334455


Q ss_pred             hhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCC
Q 030364           79 YYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAH  158 (178)
Q Consensus        79 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  158 (178)
                      ++..+|++++|+|+++.-.... ..+...+..   .+.|+++|+||+|+....   ......+....+ ..+++||++|.
T Consensus       351 ~~~~aD~iL~VvDa~~~~~~~d-~~i~~~Lr~---~~~pvIlV~NK~D~~~~~---~~~~~~~~lg~~-~~~~iSA~~g~  422 (712)
T PRK09518        351 AVSLADAVVFVVDGQVGLTSTD-ERIVRMLRR---AGKPVVLAVNKIDDQASE---YDAAEFWKLGLG-EPYPISAMHGR  422 (712)
T ss_pred             HHHhCCEEEEEEECCCCCCHHH-HHHHHHHHh---cCCCEEEEEECcccccch---hhHHHHHHcCCC-CeEEEECCCCC
Confidence            7889999999999986422111 233344433   478999999999985421   112222222222 45789999999


Q ss_pred             CHHHHHHHHHhhccc
Q 030364          159 NVNELFYEIGDCTEC  173 (178)
Q Consensus       159 ~i~~~~~~l~~~i~~  173 (178)
                      |+++++++|++.+..
T Consensus       423 GI~eLl~~i~~~l~~  437 (712)
T PRK09518        423 GVGDLLDEALDSLKV  437 (712)
T ss_pred             CchHHHHHHHHhccc
Confidence            999999999988753

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.87  E-value=4.9e-21  Score=152.69  Aligned_cols=159  Identities=19%  Similarity=0.191  Sum_probs=108.6

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCcCC-CCccCceeeeEEEEEEEeCCeEEEEEEEeCCCch----------hhhccc-
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFF-DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE----------RYHSLA-   76 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~----------~~~~~~-   76 (178)
                      ..++|+++|.+|+|||||+|+|++.... ....+.++.+.....+.+++..  +.+|||||..          .+.... 
T Consensus       449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~--~~liDTaG~~~~~~~~~~~e~~~~~r~  526 (712)
T PRK09518        449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGED--WLFIDTAGIKRRQHKLTGAEYYSSLRT  526 (712)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCE--EEEEECCCcccCcccchhHHHHHHHHH
Confidence            3589999999999999999999987642 1223333344444555666654  5599999953          122221 


Q ss_pred             hhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHH----cCCeEEEE
Q 030364           77 PMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQE----NGLSFLET  152 (178)
Q Consensus        77 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~----~~~~~~~~  152 (178)
                      ..+++.+|++++|+|++++.+..... ++..+..   .+.|+++|+||+|+.+..... .....+...    ...+++.+
T Consensus       527 ~~~i~~advvilViDat~~~s~~~~~-i~~~~~~---~~~piIiV~NK~DL~~~~~~~-~~~~~~~~~l~~~~~~~ii~i  601 (712)
T PRK09518        527 QAAIERSELALFLFDASQPISEQDLK-VMSMAVD---AGRALVLVFNKWDLMDEFRRQ-RLERLWKTEFDRVTWARRVNL  601 (712)
T ss_pred             HHHhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEEchhcCChhHHH-HHHHHHHHhccCCCCCCEEEE
Confidence            23468899999999999887776654 3333433   468999999999986532211 111111111    13578999


Q ss_pred             eCCCCCCHHHHHHHHHhhcccc
Q 030364          153 SAKSAHNVNELFYEIGDCTECF  174 (178)
Q Consensus       153 Sa~~~~~i~~~~~~l~~~i~~~  174 (178)
                      ||++|.|++++++.+.+.+..+
T Consensus       602 SAktg~gv~~L~~~i~~~~~~~  623 (712)
T PRK09518        602 SAKTGWHTNRLAPAMQEALESW  623 (712)
T ss_pred             ECCCCCCHHHHHHHHHHHHHHh
Confidence            9999999999999999987754

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=99.87  E-value=4e-20  Score=129.43  Aligned_cols=156  Identities=21%  Similarity=0.161  Sum_probs=104.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhh-------ccchhhhcCCc
Q 030364           12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYH-------SLAPMYYRGAA   84 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~-------~~~~~~~~~~d   84 (178)
                      +|+++|.+|+|||||+++|.+........+..+.+.....+.+++  ..+++||+||.....       ......++.+|
T Consensus         2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad   79 (233)
T cd01896           2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKG--AKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD   79 (233)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECC--eEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence            789999999999999999998653222222222333344445555  567899999974322       12345688999


Q ss_pred             EEEEEEECCCHh-HHHHHHHHHHH-----------------------------------------HHHh-----------
Q 030364           85 AAVVVYDITSMD-SFERAKKWVQE-----------------------------------------LQRQ-----------  111 (178)
Q Consensus        85 ~~i~v~d~~~~~-s~~~~~~~~~~-----------------------------------------~~~~-----------  111 (178)
                      ++++|+|+++++ ....+...+..                                         +.++           
T Consensus        80 ~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~  159 (233)
T cd01896          80 LILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIRE  159 (233)
T ss_pred             EEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEcc
Confidence            999999998755 33333222211                                         0000           


Q ss_pred             -----------C--CCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHhhcccccc
Q 030364          112 -----------G--NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIGDCTECFSL  176 (178)
Q Consensus       112 -----------~--~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~~~~~  176 (178)
                                 .  ....|+++|+||+|+..     .++...+++  ..+++++||++|.|++++++.|.+.+.-.|.
T Consensus       160 ~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~-----~~~~~~~~~--~~~~~~~SA~~g~gi~~l~~~i~~~L~~irv  230 (233)
T cd01896         160 DITVDDLIDVIEGNRVYIPCLYVYNKIDLIS-----IEELDLLAR--QPNSVVISAEKGLNLDELKERIWDKLGLIRV  230 (233)
T ss_pred             CCCHHHHHHHHhCCceEeeEEEEEECccCCC-----HHHHHHHhc--CCCEEEEcCCCCCCHHHHHHHHHHHhCcEEE
Confidence                       0  12468999999999854     233334444  3468999999999999999999998876553

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=99.87  E-value=9.5e-21  Score=146.89  Aligned_cols=155  Identities=18%  Similarity=0.170  Sum_probs=101.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCcCCCCccC----ceeeeEEEEEEE------------eCCeEEEEEEEeCCCchhhh
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQES----TIGAAFFTQVLS------------LNEVTIKFDIWDTAGQERYH   73 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~----~~~~~~~~~~~~------------~~~~~~~~~i~d~~g~~~~~   73 (178)
                      ..-|+++|++++|||||+++|.+..+......    +.+.........            +......+.+|||||++.|.
T Consensus         4 ~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~   83 (590)
T TIGR00491         4 SPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFT   83 (590)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHH
Confidence            34699999999999999999998766432211    111111111100            00111237899999999999


Q ss_pred             ccchhhhcCCcEEEEEEECCC---HhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccc------------CHHH-
Q 030364           74 SLAPMYYRGAAAAVVVYDITS---MDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKV------------KNEE-  137 (178)
Q Consensus        74 ~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~------------~~~~-  137 (178)
                      .++..++..+|++++|+|+++   +++++.+.    .+..   .+.|+++++||+|+......            .... 
T Consensus        84 ~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~----~l~~---~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v  156 (590)
T TIGR00491        84 NLRKRGGALADLAILIVDINEGFKPQTQEALN----ILRM---YKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQV  156 (590)
T ss_pred             HHHHHHHhhCCEEEEEEECCcCCCHhHHHHHH----HHHH---cCCCEEEEEECCCccchhhhccCchHHHHHHhhhHHH
Confidence            999989999999999999997   44444432    2222   36899999999998632110            0000 


Q ss_pred             -----------HHHHHH------------Hc--CCeEEEEeCCCCCCHHHHHHHHHhhc
Q 030364          138 -----------GELYAQ------------EN--GLSFLETSAKSAHNVNELFYEIGDCT  171 (178)
Q Consensus       138 -----------~~~~~~------------~~--~~~~~~~Sa~~~~~i~~~~~~l~~~i  171 (178)
                                 ...+..            .+  .++++++||++|+|+++++.+|....
T Consensus       157 ~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~  215 (590)
T TIGR00491       157 QQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLA  215 (590)
T ss_pred             HHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHH
Confidence                       001111            11  36899999999999999999886533

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=99.86  E-value=5.2e-21  Score=144.90  Aligned_cols=155  Identities=19%  Similarity=0.171  Sum_probs=101.0

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHHhCcCC--C---------------------------CccCceeeeEEEEEEEeCCe
Q 030364            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFF--D---------------------------FQESTIGAAFFTQVLSLNEV   57 (178)
Q Consensus         7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~~~--~---------------------------~~~~~~~~~~~~~~~~~~~~   57 (178)
                      +++.++|+++|++++|||||+++|+...-.  .                           ..+...+.+.......+...
T Consensus         3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~   82 (425)
T PRK12317          3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETD   82 (425)
T ss_pred             CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecC
Confidence            456899999999999999999999843210  0                           00112333444444445555


Q ss_pred             EEEEEEEeCCCchhhhccchhhhcCCcEEEEEEECCCHhHHHH-HHHHHHHHHHhCCCCceEEEEEeCCCCccccc----
Q 030364           58 TIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFER-AKKWVQELQRQGNPNLIMFLVANKVDLEEKRK----  132 (178)
Q Consensus        58 ~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~----  132 (178)
                      .+.+.+||+||++.|.......+..+|++++|+|++++..+.. ....+..+...  ...|+++++||+|+.+..+    
T Consensus        83 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~--~~~~iivviNK~Dl~~~~~~~~~  160 (425)
T PRK12317         83 KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL--GINQLIVAINKMDAVNYDEKRYE  160 (425)
T ss_pred             CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc--CCCeEEEEEEccccccccHHHHH
Confidence            6788999999998876655556788999999999997312211 12222223222  2246899999999864211    


Q ss_pred             cCHHHHHHHHHHcC-----CeEEEEeCCCCCCHHHH
Q 030364          133 VKNEEGELYAQENG-----LSFLETSAKSAHNVNEL  163 (178)
Q Consensus       133 ~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~~  163 (178)
                      ...++...+....+     ++++++||++|.|+++.
T Consensus       161 ~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~  196 (425)
T PRK12317        161 EVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKK  196 (425)
T ss_pred             HHHHHHHHHHHhhCCCcCcceEEEeecccCCCcccc
Confidence            11223344444444     57999999999999873

>COG2229 Predicted GTPase [General function prediction only]

Probab=99.86  E-value=2.2e-20  Score=121.68  Aligned_cols=160  Identities=23%  Similarity=0.289  Sum_probs=115.9

Q ss_pred             CCCCceeEEEEEcCCCCCHHHHHHHHHhCcCCCC--------ccC--ceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhc
Q 030364            5 SNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDF--------QES--TIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHS   74 (178)
Q Consensus         5 ~~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~--------~~~--~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~   74 (178)
                      ..+....||+|.|+.++||||+++.+........        ...  ..+.........+++ ...+.++++|||++|..
T Consensus         5 ~~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~-~~~v~LfgtPGq~RF~f   83 (187)
T COG2229           5 ANKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDE-DTGVHLFGTPGQERFKF   83 (187)
T ss_pred             cccccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcC-cceEEEecCCCcHHHHH
Confidence            4455688999999999999999999987653111        111  011111111222233 25678999999999999


Q ss_pred             cchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHH-H-cCCeEEEE
Q 030364           75 LAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQ-E-NGLSFLET  152 (178)
Q Consensus        75 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~-~-~~~~~~~~  152 (178)
                      +|..+.+++.++|+++|.+.+..+ .....++.+.....  .|++|++||.|+..+...  ++..+..+ . ...++++.
T Consensus        84 m~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~~~--ip~vVa~NK~DL~~a~pp--e~i~e~l~~~~~~~~vi~~  158 (187)
T COG2229          84 MWEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSRNP--IPVVVAINKQDLFDALPP--EKIREALKLELLSVPVIEI  158 (187)
T ss_pred             HHHHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhccC--CCEEEEeeccccCCCCCH--HHHHHHHHhccCCCceeee
Confidence            999999999999999999998877 44455555554422  899999999999886554  33333333 3 37899999


Q ss_pred             eCCCCCCHHHHHHHHHhh
Q 030364          153 SAKSAHNVNELFYEIGDC  170 (178)
Q Consensus       153 Sa~~~~~i~~~~~~l~~~  170 (178)
                      +|..+++..+.++.+...
T Consensus       159 ~a~e~~~~~~~L~~ll~~  176 (187)
T COG2229         159 DATEGEGARDQLDVLLLK  176 (187)
T ss_pred             ecccchhHHHHHHHHHhh
Confidence            999999999998877654

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=99.86  E-value=8.2e-21  Score=147.76  Aligned_cols=160  Identities=19%  Similarity=0.249  Sum_probs=113.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC--cCCCCc------------cCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccc
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVKG--QFFDFQ------------ESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLA   76 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~~--~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~   76 (178)
                      .+|+++|+.++|||||+++|+..  .+....            +...+.+.......+....+++.+|||||+.+|....
T Consensus         2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev   81 (594)
T TIGR01394         2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEV   81 (594)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHH
Confidence            48999999999999999999863  222211            1222344444444444455788899999999999888


Q ss_pred             hhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccc--cCHHHHHHHH------HHcCCe
Q 030364           77 PMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRK--VKNEEGELYA------QENGLS  148 (178)
Q Consensus        77 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~--~~~~~~~~~~------~~~~~~  148 (178)
                      ..+++.+|++++|+|+.+. .......++..+...   +.|+++++||+|+.+.+.  +..+....+.      +...++
T Consensus        82 ~~~l~~aD~alLVVDa~~G-~~~qT~~~l~~a~~~---~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~p  157 (594)
T TIGR01394        82 ERVLGMVDGVLLLVDASEG-PMPQTRFVLKKALEL---GLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDFP  157 (594)
T ss_pred             HHHHHhCCEEEEEEeCCCC-CcHHHHHHHHHHHHC---CCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccCc
Confidence            9999999999999999874 234445565665543   678999999999865332  2212222222      224578


Q ss_pred             EEEEeCCCCC----------CHHHHHHHHHhhcccc
Q 030364          149 FLETSAKSAH----------NVNELFYEIGDCTECF  174 (178)
Q Consensus       149 ~~~~Sa~~~~----------~i~~~~~~l~~~i~~~  174 (178)
                      ++.+||++|.          |++.+|+.|++.+...
T Consensus       158 vl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P  193 (594)
T TIGR01394       158 IVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAP  193 (594)
T ss_pred             EEechhhcCcccccCcccccCHHHHHHHHHHhCCCC
Confidence            9999999995          8999999999887654

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=99.86  E-value=1.2e-20  Score=141.95  Aligned_cols=164  Identities=17%  Similarity=0.139  Sum_probs=106.3

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHHhCcCCC---CccC--ceeeeEEE----------------EEEEeCC------eEEE
Q 030364            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFD---FQES--TIGAAFFT----------------QVLSLNE------VTIK   60 (178)
Q Consensus         8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~---~~~~--~~~~~~~~----------------~~~~~~~------~~~~   60 (178)
                      ++.++|+++|++++|||||+++|.+.....   +...  +....+..                .....++      ....
T Consensus         2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (406)
T TIGR03680         2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR   81 (406)
T ss_pred             CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence            568999999999999999999997532211   1110  01111000                0000011      1367


Q ss_pred             EEEEeCCCchhhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccC--HHHH
Q 030364           61 FDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVK--NEEG  138 (178)
Q Consensus        61 ~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~--~~~~  138 (178)
                      +.+||+||++.|...+......+|++++|+|++++.........+..+...  ...|+++++||+|+.+.....  .++.
T Consensus        82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~--gi~~iIVvvNK~Dl~~~~~~~~~~~~i  159 (406)
T TIGR03680        82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEII--GIKNIVIVQNKIDLVSKEKALENYEEI  159 (406)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHc--CCCeEEEEEEccccCCHHHHHHHHHHH
Confidence            889999999999888888888899999999999643112223333333322  234689999999986532211  1222


Q ss_pred             HHHHHHc---CCeEEEEeCCCCCCHHHHHHHHHhhccc
Q 030364          139 ELYAQEN---GLSFLETSAKSAHNVNELFYEIGDCTEC  173 (178)
Q Consensus       139 ~~~~~~~---~~~~~~~Sa~~~~~i~~~~~~l~~~i~~  173 (178)
                      ..+....   +++++++||++|.|+++++++|...+..
T Consensus       160 ~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~~  197 (406)
T TIGR03680       160 KEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIPT  197 (406)
T ss_pred             HhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCCC
Confidence            3333322   5789999999999999999999986653

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=99.86  E-value=2.8e-20  Score=124.06  Aligned_cols=153  Identities=18%  Similarity=0.209  Sum_probs=99.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCch----------hhhccchhhhc
Q 030364           12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE----------RYHSLAPMYYR   81 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~----------~~~~~~~~~~~   81 (178)
                      .|+++|.+|+|||||++.+.++.......++.+.+........++   .+.+||+||..          .+......++.
T Consensus         1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~   77 (170)
T cd01876           1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE   77 (170)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence            379999999999999999997666555555555554444444443   77899999943          23333334443


Q ss_pred             ---CCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccC--HHHHHHHHH--HcCCeEEEEeC
Q 030364           82 ---GAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVK--NEEGELYAQ--ENGLSFLETSA  154 (178)
Q Consensus        82 ---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~--~~~~~~~~~--~~~~~~~~~Sa  154 (178)
                         ..+++++++|..+..+... ....+.+...   +.|+++++||+|+.......  ........+  ....+++++|+
T Consensus        78 ~~~~~~~~~~v~d~~~~~~~~~-~~~~~~l~~~---~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sa  153 (170)
T cd01876          78 NRENLKGVVLLIDSRHGPTEID-LEMLDWLEEL---GIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFSS  153 (170)
T ss_pred             hChhhhEEEEEEEcCcCCCHhH-HHHHHHHHHc---CCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEEec
Confidence               3578899999986532211 1122223222   57899999999985432211  112222222  34468999999


Q ss_pred             CCCCCHHHHHHHHHhhc
Q 030364          155 KSAHNVNELFYEIGDCT  171 (178)
Q Consensus       155 ~~~~~i~~~~~~l~~~i  171 (178)
                      +++.|+++++++|.+.+
T Consensus       154 ~~~~~~~~l~~~l~~~~  170 (170)
T cd01876         154 LKGQGIDELRALIEKWL  170 (170)
T ss_pred             CCCCCHHHHHHHHHHhC
Confidence            99999999999998753

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>PRK10218 GTP-binding protein; Provisional

Probab=99.86  E-value=4.5e-20  Score=143.59  Aligned_cols=162  Identities=17%  Similarity=0.151  Sum_probs=116.1

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh--CcCCCC------------ccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhc
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVK--GQFFDF------------QESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHS   74 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~--~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~   74 (178)
                      ...+|+++|+.++|||||+++|+.  +.+...            .....+.+.......+....+++.+||+||+..|..
T Consensus         4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~   83 (607)
T PRK10218          4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG   83 (607)
T ss_pred             CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH
Confidence            367999999999999999999987  333221            123445555566666666678999999999999999


Q ss_pred             cchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccC-HHHHHHHH-------HHcC
Q 030364           75 LAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVK-NEEGELYA-------QENG  146 (178)
Q Consensus        75 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~-~~~~~~~~-------~~~~  146 (178)
                      .+..+++.+|++++|+|+.+.... ....++..+..   .+.|.++++||+|+...+... .++...+.       ....
T Consensus        84 ~v~~~l~~aDg~ILVVDa~~G~~~-qt~~~l~~a~~---~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~~  159 (607)
T PRK10218         84 EVERVMSMVDSVLLVVDAFDGPMP-QTRFVTKKAFA---YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLD  159 (607)
T ss_pred             HHHHHHHhCCEEEEEEecccCccH-HHHHHHHHHHH---cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccccC
Confidence            999999999999999999875322 22333344333   367889999999986533211 11222221       1234


Q ss_pred             CeEEEEeCCCCC----------CHHHHHHHHHhhcccc
Q 030364          147 LSFLETSAKSAH----------NVNELFYEIGDCTECF  174 (178)
Q Consensus       147 ~~~~~~Sa~~~~----------~i~~~~~~l~~~i~~~  174 (178)
                      +|++.+||++|.          |+..+++.|++.+-..
T Consensus       160 ~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P  197 (607)
T PRK10218        160 FPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAP  197 (607)
T ss_pred             CCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCC
Confidence            789999999998          6899999998877544

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=99.86  E-value=1.9e-20  Score=140.71  Aligned_cols=168  Identities=16%  Similarity=0.123  Sum_probs=105.3

Q ss_pred             cCCCCceeEEEEEcCCCCCHHHHHHHHHhCcCC---CCccCceeeeEEE--EEE----------------EeC--C----
Q 030364            4 TSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFF---DFQESTIGAAFFT--QVL----------------SLN--E----   56 (178)
Q Consensus         4 ~~~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~---~~~~~~~~~~~~~--~~~----------------~~~--~----   56 (178)
                      +...++.++|+++|+.++|||||+.+|.+....   .+.....+.....  ...                ..+  +    
T Consensus         3 ~~~~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (411)
T PRK04000          3 WEKVQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETE   82 (411)
T ss_pred             cccCCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccc
Confidence            345667899999999999999999999653111   1111111111100  000                000  0    


Q ss_pred             eEEEEEEEeCCCchhhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccC--
Q 030364           57 VTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVK--  134 (178)
Q Consensus        57 ~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~--  134 (178)
                      ....+.+||+||++.|..........+|++++|+|++++.........+..+...  ...|+++|+||+|+.+.....  
T Consensus        83 ~~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~--~i~~iiVVlNK~Dl~~~~~~~~~  160 (411)
T PRK04000         83 LLRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDII--GIKNIVIVQNKIDLVSKERALEN  160 (411)
T ss_pred             cccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHc--CCCcEEEEEEeeccccchhHHHH
Confidence            1357899999999888776555666789999999999643111111222223222  224689999999986533221  


Q ss_pred             HHHHHHHHHH---cCCeEEEEeCCCCCCHHHHHHHHHhhccc
Q 030364          135 NEEGELYAQE---NGLSFLETSAKSAHNVNELFYEIGDCTEC  173 (178)
Q Consensus       135 ~~~~~~~~~~---~~~~~~~~Sa~~~~~i~~~~~~l~~~i~~  173 (178)
                      .++...+.+.   .+++++++||++|.|+++++++|.+.+..
T Consensus       161 ~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~  202 (411)
T PRK04000        161 YEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIPT  202 (411)
T ss_pred             HHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCCC
Confidence            1223333332   24789999999999999999999987654

>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]

Probab=99.85  E-value=2.3e-23  Score=135.32  Aligned_cols=168  Identities=33%  Similarity=0.548  Sum_probs=143.4

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCe-EEEEEEEeCCCchhhhccchhhhcCCcEE
Q 030364            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEV-TIKFDIWDTAGQERYHSLAPMYYRGAAAA   86 (178)
Q Consensus         8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~d~~g~~~~~~~~~~~~~~~d~~   86 (178)
                      ..-++++|+|..|+|||+++.+.....+..++..+.+.+...+...++.. .+++++||..|++++..+..-+++.+.+.
T Consensus        23 ~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~  102 (229)
T KOG4423|consen   23 EHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGA  102 (229)
T ss_pred             hhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcce
Confidence            44679999999999999999999999998889999999888887777654 47789999999999999999999999999


Q ss_pred             EEEEECCCHhHHHHHHHHHHHHHHhC----CCCceEEEEEeCCCCccccccC-HHHHHHHHHHcCC-eEEEEeCCCCCCH
Q 030364           87 VVVYDITSMDSFERAKKWVQELQRQG----NPNLIMFLVANKVDLEEKRKVK-NEEGELYAQENGL-SFLETSAKSAHNV  160 (178)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~~~~ivv~nK~D~~~~~~~~-~~~~~~~~~~~~~-~~~~~Sa~~~~~i  160 (178)
                      ++|||+++.-.|+.+..|.+.+....    ..-.|+++++||||........ ......+++++++ .++++|++.+.++
T Consensus       103 ~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~Kenkni  182 (229)
T KOG4423|consen  103 FIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSAKENKNI  182 (229)
T ss_pred             EEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeeccccccCh
Confidence            99999999999999999999886643    2346789999999986533222 3567788888986 7999999999999


Q ss_pred             HHHHHHHHhhccccc
Q 030364          161 NELFYEIGDCTECFS  175 (178)
Q Consensus       161 ~~~~~~l~~~i~~~~  175 (178)
                      +|+-..|++.+..-+
T Consensus       183 ~Ea~r~lVe~~lvnd  197 (229)
T KOG4423|consen  183 PEAQRELVEKILVND  197 (229)
T ss_pred             hHHHHHHHHHHHhhc
Confidence            999999999876543

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=99.85  E-value=1.7e-20  Score=129.49  Aligned_cols=150  Identities=21%  Similarity=0.183  Sum_probs=93.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCcCCCC-----------------------------ccCceeeeEEEEEEEeCCeEEEEE
Q 030364           12 KLVLLGDMGTGKTSLVLRFVKGQFFDF-----------------------------QESTIGAAFFTQVLSLNEVTIKFD   62 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~   62 (178)
                      ||+++|++|+|||||+++|+...-.-.                             .+...+.+.......+......+.
T Consensus         1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~   80 (208)
T cd04166           1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI   80 (208)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence            689999999999999999975321100                             000022222222233333445778


Q ss_pred             EEeCCCchhhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccc----CHHHH
Q 030364           63 IWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKV----KNEEG  138 (178)
Q Consensus        63 i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~----~~~~~  138 (178)
                      +|||||+..|.......+..+|++++|+|++++..- ........+...  ...++++|+||+|+.+....    ...+.
T Consensus        81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~-~~~~~~~~~~~~--~~~~iIvviNK~D~~~~~~~~~~~i~~~~  157 (208)
T cd04166          81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVLE-QTRRHSYILSLL--GIRHVVVAVNKMDLVDYSEEVFEEIVADY  157 (208)
T ss_pred             EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccH-hHHHHHHHHHHc--CCCcEEEEEEchhcccCCHHHHHHHHHHH
Confidence            999999988876666778999999999999875321 112222222222  12357778999998642211    11233


Q ss_pred             HHHHHHcC---CeEEEEeCCCCCCHHHHH
Q 030364          139 ELYAQENG---LSFLETSAKSAHNVNELF  164 (178)
Q Consensus       139 ~~~~~~~~---~~~~~~Sa~~~~~i~~~~  164 (178)
                      ..+.+..+   .+++.+||++|.|+++..
T Consensus       158 ~~~~~~~~~~~~~ii~iSA~~g~ni~~~~  186 (208)
T cd04166         158 LAFAAKLGIEDITFIPISALDGDNVVSRS  186 (208)
T ss_pred             HHHHHHcCCCCceEEEEeCCCCCCCccCC
Confidence            44445555   459999999999997543

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>cd01884 EF_Tu EF-Tu subfamily

Probab=99.85  E-value=1.5e-19  Score=123.20  Aligned_cols=148  Identities=16%  Similarity=0.129  Sum_probs=98.0

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCcCC--------------CCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhc
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFF--------------DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHS   74 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~   74 (178)
                      +.++|+++|+.++|||||+++|++....              ...+...+.+.......+.....++.++||||+..|..
T Consensus         1 ~~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~   80 (195)
T cd01884           1 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIK   80 (195)
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHH
Confidence            3689999999999999999999864100              00111233344444444555556788999999998887


Q ss_pred             cchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCce-EEEEEeCCCCccccccC---HHHHHHHHHHc-----
Q 030364           75 LAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLI-MFLVANKVDLEEKRKVK---NEEGELYAQEN-----  145 (178)
Q Consensus        75 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-~ivv~nK~D~~~~~~~~---~~~~~~~~~~~-----  145 (178)
                      .....+..+|++++|+|+..+-. ......+..+...   +.| +++++||+|+....+..   ..+...+....     
T Consensus        81 ~~~~~~~~~D~~ilVvda~~g~~-~~~~~~~~~~~~~---~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~  156 (195)
T cd01884          81 NMITGAAQMDGAILVVSATDGPM-PQTREHLLLARQV---GVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGD  156 (195)
T ss_pred             HHHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhccccc
Confidence            77788899999999999986422 2223334444433   455 67889999985322211   12233333333     


Q ss_pred             CCeEEEEeCCCCCCH
Q 030364          146 GLSFLETSAKSAHNV  160 (178)
Q Consensus       146 ~~~~~~~Sa~~~~~i  160 (178)
                      +++++.+||++|.++
T Consensus       157 ~v~iipiSa~~g~n~  171 (195)
T cd01884         157 NTPIVRGSALKALEG  171 (195)
T ss_pred             CCeEEEeeCccccCC
Confidence            368999999999874

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>cd04168 TetM_like Tet(M)-like subfamily

Probab=99.85  E-value=4.8e-20  Score=129.17  Aligned_cols=113  Identities=19%  Similarity=0.207  Sum_probs=81.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCcCC--------C-----Cc---cCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhcc
Q 030364           12 KLVLLGDMGTGKTSLVLRFVKGQFF--------D-----FQ---ESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSL   75 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~~~~~--------~-----~~---~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~   75 (178)
                      +|+++|++|+|||||+++|+...-.        .     .+   ....+.+.......+....+++.+||+||+..|...
T Consensus         1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~   80 (237)
T cd04168           1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE   80 (237)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence            5899999999999999999863210        0     00   111222333334444445578899999999999888


Q ss_pred             chhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCc
Q 030364           76 APMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLE  128 (178)
Q Consensus        76 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~  128 (178)
                      +..+++.+|++++|+|+++.... ....++..+...   +.|+++++||+|+.
T Consensus        81 ~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~~---~~P~iivvNK~D~~  129 (237)
T cd04168          81 VERSLSVLDGAILVISAVEGVQA-QTRILWRLLRKL---NIPTIIFVNKIDRA  129 (237)
T ss_pred             HHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHHc---CCCEEEEEECcccc
Confidence            88899999999999999986433 334455555443   68899999999975

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.84  E-value=2.9e-20  Score=136.90  Aligned_cols=150  Identities=16%  Similarity=0.112  Sum_probs=105.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCcCC-CCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhh---------ccchhhh
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVKGQFF-DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYH---------SLAPMYY   80 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~---------~~~~~~~   80 (178)
                      ..|+++|.||+|||||+|+|++.+.. -...|..+.+.......+.+.  .|.++||+|.+...         ......+
T Consensus         4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~--~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai   81 (444)
T COG1160           4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGR--EFILIDTGGLDDGDEDELQELIREQALIAI   81 (444)
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCc--eEEEEECCCCCcCCchHHHHHHHHHHHHHH
Confidence            57999999999999999999987653 223344444555555555554  47899999965322         2345678


Q ss_pred             cCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcC-CeEEEEeCCCCCC
Q 030364           81 RGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENG-LSFLETSAKSAHN  159 (178)
Q Consensus        81 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~  159 (178)
                      ..||+++||+|....-+-.. ....+.+.   ..++|+++|+||+|-...    .+..-+|.. +| -+.+.+||..|.|
T Consensus        82 ~eADvilfvVD~~~Git~~D-~~ia~~Lr---~~~kpviLvvNK~D~~~~----e~~~~efys-lG~g~~~~ISA~Hg~G  152 (444)
T COG1160          82 EEADVILFVVDGREGITPAD-EEIAKILR---RSKKPVILVVNKIDNLKA----EELAYEFYS-LGFGEPVPISAEHGRG  152 (444)
T ss_pred             HhCCEEEEEEeCCCCCCHHH-HHHHHHHH---hcCCCEEEEEEcccCchh----hhhHHHHHh-cCCCCceEeehhhccC
Confidence            89999999999997543222 12223333   246899999999996421    122233333 44 4899999999999


Q ss_pred             HHHHHHHHHhhc
Q 030364          160 VNELFYEIGDCT  171 (178)
Q Consensus       160 i~~~~~~l~~~i  171 (178)
                      +.++++++++.+
T Consensus       153 i~dLld~v~~~l  164 (444)
T COG1160         153 IGDLLDAVLELL  164 (444)
T ss_pred             HHHHHHHHHhhc
Confidence            999999999886

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=99.84  E-value=4.3e-20  Score=136.31  Aligned_cols=154  Identities=21%  Similarity=0.192  Sum_probs=110.6

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCcCC-CCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhcc--------chhh
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFF-DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSL--------APMY   79 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~--------~~~~   79 (178)
                      ..++++++|.||+|||||+|.|.+.... -...+.++.++....+.++|  +.+.+.||.|..+....        ....
T Consensus       216 ~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G--~pv~l~DTAGiRet~d~VE~iGIeRs~~~  293 (454)
T COG0486         216 EGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNG--IPVRLVDTAGIRETDDVVERIGIERAKKA  293 (454)
T ss_pred             cCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECC--EEEEEEecCCcccCccHHHHHHHHHHHHH
Confidence            4789999999999999999999976532 22445555566666667777  55669999997654443        2345


Q ss_pred             hcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCC
Q 030364           80 YRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHN  159 (178)
Q Consensus        80 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  159 (178)
                      ++.+|.+++|+|.+.+.+-+.. ..+.    ....+.|+++|.||.|+..+......     .-..+.+++.+|+++|+|
T Consensus       294 i~~ADlvL~v~D~~~~~~~~d~-~~~~----~~~~~~~~i~v~NK~DL~~~~~~~~~-----~~~~~~~~i~iSa~t~~G  363 (454)
T COG0486         294 IEEADLVLFVLDASQPLDKEDL-ALIE----LLPKKKPIIVVLNKADLVSKIELESE-----KLANGDAIISISAKTGEG  363 (454)
T ss_pred             HHhCCEEEEEEeCCCCCchhhH-HHHH----hcccCCCEEEEEechhcccccccchh-----hccCCCceEEEEecCccC
Confidence            7899999999999985222221 1111    33467899999999999765442211     112345899999999999


Q ss_pred             HHHHHHHHHhhcccc
Q 030364          160 VNELFYEIGDCTECF  174 (178)
Q Consensus       160 i~~~~~~l~~~i~~~  174 (178)
                      ++.+.+.|.+.+...
T Consensus       364 l~~L~~~i~~~~~~~  378 (454)
T COG0486         364 LDALREAIKQLFGKG  378 (454)
T ss_pred             HHHHHHHHHHHHhhc
Confidence            999999998876543

>PRK04004 translation initiation factor IF-2; Validated

Probab=99.84  E-value=2.3e-19  Score=139.70  Aligned_cols=155  Identities=22%  Similarity=0.238  Sum_probs=100.1

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccC----ceeeeEEEEEEE--eCCeE-----E-----EEEEEeCCCchhh
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQES----TIGAAFFTQVLS--LNEVT-----I-----KFDIWDTAGQERY   72 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~----~~~~~~~~~~~~--~~~~~-----~-----~~~i~d~~g~~~~   72 (178)
                      +...|+++|++++|||||+++|.+.........    +.+.+.......  ..+..     .     .+.||||||++.|
T Consensus         5 R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f   84 (586)
T PRK04004          5 RQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAF   84 (586)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHH
Confidence            455799999999999999999986544322211    112111111100  00111     1     2679999999999


Q ss_pred             hccchhhhcCCcEEEEEEECCC---HhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccC---------------
Q 030364           73 HSLAPMYYRGAAAAVVVYDITS---MDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVK---------------  134 (178)
Q Consensus        73 ~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~---------------  134 (178)
                      ..++...+..+|++++|+|+++   +++++.+.    .+..   .+.|+++++||+|+.......               
T Consensus        85 ~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~----~~~~---~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~~  157 (586)
T PRK04004         85 TNLRKRGGALADIAILVVDINEGFQPQTIEAIN----ILKR---RKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQR  157 (586)
T ss_pred             HHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHH----HHHH---cCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhHH
Confidence            9988888899999999999997   55555443    2222   478899999999985211100               


Q ss_pred             -HH--------HHHHHHH------------H--cCCeEEEEeCCCCCCHHHHHHHHHhh
Q 030364          135 -NE--------EGELYAQ------------E--NGLSFLETSAKSAHNVNELFYEIGDC  170 (178)
Q Consensus       135 -~~--------~~~~~~~------------~--~~~~~~~~Sa~~~~~i~~~~~~l~~~  170 (178)
                       ..        ....+..            .  ..++++++||++|.|+++++..+...
T Consensus       158 v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~  216 (586)
T PRK04004        158 VQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGL  216 (586)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHH
Confidence             00        0001110            0  13689999999999999999887643

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=99.84  E-value=2.6e-19  Score=140.03  Aligned_cols=156  Identities=14%  Similarity=0.140  Sum_probs=103.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCc---CCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEE
Q 030364           12 KLVLLGDMGTGKTSLVLRFVKGQ---FFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVV   88 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~   88 (178)
                      -|.++|+.++|||||+++|++..   +.++.....+.+.........+ ...+.+||+||++.|.......+..+|++++
T Consensus         2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~-g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lL   80 (614)
T PRK10512          2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPD-GRVLGFIDVPGHEKFLSNMLAGVGGIDHALL   80 (614)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCC-CcEEEEEECCCHHHHHHHHHHHhhcCCEEEE
Confidence            57899999999999999998632   2222323333333222232222 2347899999999998777777899999999


Q ss_pred             EEECCCHhHHHHHHHHHHHHHHhCCCCce-EEEEEeCCCCccccccC--HHHHHHHHHHcC---CeEEEEeCCCCCCHHH
Q 030364           89 VYDITSMDSFERAKKWVQELQRQGNPNLI-MFLVANKVDLEEKRKVK--NEEGELYAQENG---LSFLETSAKSAHNVNE  162 (178)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-~ivv~nK~D~~~~~~~~--~~~~~~~~~~~~---~~~~~~Sa~~~~~i~~  162 (178)
                      |+|++++-. ......+..+...   +.| ++||+||+|+.+.....  .++...+....+   .+++++||++|.|+++
T Consensus        81 VVda~eg~~-~qT~ehl~il~~l---gi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~~  156 (614)
T PRK10512         81 VVACDDGVM-AQTREHLAILQLT---GNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRGIDA  156 (614)
T ss_pred             EEECCCCCc-HHHHHHHHHHHHc---CCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCHH
Confidence            999987321 1122222333322   344 57899999986532221  223334444333   6899999999999999


Q ss_pred             HHHHHHhhcc
Q 030364          163 LFYEIGDCTE  172 (178)
Q Consensus       163 ~~~~l~~~i~  172 (178)
                      ++++|.+...
T Consensus       157 L~~~L~~~~~  166 (614)
T PRK10512        157 LREHLLQLPE  166 (614)
T ss_pred             HHHHHHHhhc
Confidence            9999987554

>cd04167 Snu114p Snu114p subfamily

Probab=99.83  E-value=1.7e-19  Score=125.02  Aligned_cols=157  Identities=18%  Similarity=0.158  Sum_probs=101.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCcCCCCc-----------------cCceeeeEEEEEE--Ee---CCeEEEEEEEeCCCc
Q 030364           12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQ-----------------ESTIGAAFFTQVL--SL---NEVTIKFDIWDTAGQ   69 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~~~~~~~~-----------------~~~~~~~~~~~~~--~~---~~~~~~~~i~d~~g~   69 (178)
                      +|+++|+.++|||||+++|+........                 ....+.+......  .+   ++..+.+.+||+||+
T Consensus         2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~   81 (213)
T cd04167           2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH   81 (213)
T ss_pred             cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence            6899999999999999999875432210                 0111112111111  11   355688999999999


Q ss_pred             hhhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccc-cCH-----------HH
Q 030364           70 ERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRK-VKN-----------EE  137 (178)
Q Consensus        70 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~-~~~-----------~~  137 (178)
                      ..+......++..+|++++|+|+++..+... ..++.....   .+.|+++++||+|+..... ...           ++
T Consensus        82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~---~~~p~iiviNK~D~~~~~~~l~~~~~~~~l~~~i~~  157 (213)
T cd04167          82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL---EGLPIVLVINKIDRLILELKLPPNDAYFKLRHIIDE  157 (213)
T ss_pred             cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECcccCcccccCCHHHHHHHHHHHHHH
Confidence            9988888888999999999999987665433 233333332   3589999999999742110 000           11


Q ss_pred             HHHHHHHcC-------Ce----EEEEeCCCCCCHH--------HHHHHHHhhcc
Q 030364          138 GELYAQENG-------LS----FLETSAKSAHNVN--------ELFYEIGDCTE  172 (178)
Q Consensus       138 ~~~~~~~~~-------~~----~~~~Sa~~~~~i~--------~~~~~l~~~i~  172 (178)
                      ....+...+       +|    +++.|++.+.++.        ++++.|.+.+-
T Consensus       158 ~n~~~~~~~~~~~~~~~p~~~nv~~~s~~~~w~~~~~~~~~~~~~~~~~~~~~~  211 (213)
T cd04167         158 VNNIIASFSTTLSFLFSPENGNVCFASSKFGFCFTLESFAKKYGLVDSIVSNIP  211 (213)
T ss_pred             HHHHHHHhcCCCceEeccCCCeEEEEecCCCeEEecHHHHhhhhHHHHHHhhCC
Confidence            122222222       22    7788999998776        77777766553

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1

Probab=99.83  E-value=1.9e-19  Score=124.61  Aligned_cols=158  Identities=19%  Similarity=0.236  Sum_probs=99.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEe-CCeEEEEEEEeCCCchhhhc-----cchhhhcCCcE
Q 030364           12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSL-NEVTIKFDIWDTAGQERYHS-----LAPMYYRGAAA   85 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~d~~g~~~~~~-----~~~~~~~~~d~   85 (178)
                      ||+++|+.+|||||+.+.++++..+... ...+.+.......+ -...+.+.+||+||+..+..     .....++++++
T Consensus         1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT-~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~   79 (232)
T PF04670_consen    1 KILLMGPRRSGKTSIRSVIFHKYSPRDT-LRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGV   79 (232)
T ss_dssp             EEEEEESTTSSHHHHHHHHHS---GGGG-GG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESE
T ss_pred             CEEEEcCCCCChhhHHHHHHcCCCchhc-cccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCE
Confidence            7999999999999999998876544322 22222222222222 12246888999999865544     35677899999


Q ss_pred             EEEEEECCCHhHHHHHHHHHHHHHH--hCCCCceEEEEEeCCCCccccccC------HHHHHHHHHHcC---CeEEEEeC
Q 030364           86 AVVVYDITSMDSFERAKKWVQELQR--QGNPNLIMFLVANKVDLEEKRKVK------NEEGELYAQENG---LSFLETSA  154 (178)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~--~~~~~~~~ivv~nK~D~~~~~~~~------~~~~~~~~~~~~---~~~~~~Sa  154 (178)
                      +|+|+|+.+.+..+.+..+...+..  ...++..+.|+++|+|+..+....      .+.....+...+   +.++.||.
T Consensus        80 LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TSI  159 (232)
T PF04670_consen   80 LIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTSI  159 (232)
T ss_dssp             EEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-T
T ss_pred             EEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEeccC
Confidence            9999999955555555544444333  226899999999999985422111      112222333444   78999999


Q ss_pred             CCCCCHHHHHHHHHhhc
Q 030364          155 KSAHNVNELFYEIGDCT  171 (178)
Q Consensus       155 ~~~~~i~~~~~~l~~~i  171 (178)
                      .+ +.+-++|..+++.+
T Consensus       160 ~D-~Sly~A~S~Ivq~L  175 (232)
T PF04670_consen  160 WD-ESLYEAWSKIVQKL  175 (232)
T ss_dssp             TS-THHHHHHHHHHHTT
T ss_pred             cC-cHHHHHHHHHHHHH
Confidence            99 69999999999875

RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.

>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.83  E-value=2.5e-19  Score=125.42  Aligned_cols=163  Identities=15%  Similarity=0.174  Sum_probs=105.7

Q ss_pred             CCCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchh------hh------
Q 030364            6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER------YH------   73 (178)
Q Consensus         6 ~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~------~~------   73 (178)
                      +..+.++|+|+|.||+|||||.|.+.+.+..+...... ++.....-.+.....++.|+||||.-.      +.      
T Consensus        68 e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~-TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~l  146 (379)
T KOG1423|consen   68 EAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVH-TTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVL  146 (379)
T ss_pred             hcceEEEEEEEcCCCcchhhhhhHhhCCcccccccccc-ceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhh
Confidence            34578999999999999999999999988776433333 333344444445567899999999411      11      


Q ss_pred             ccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccc-------------cCH--HH-
Q 030364           74 SLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRK-------------VKN--EE-  137 (178)
Q Consensus        74 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~-------------~~~--~~-  137 (178)
                      ......+..+|.+++++|+++....-. .+.+..+..+  .+.|-++|+||.|...+..             +..  .+ 
T Consensus       147 q~~~~a~q~AD~vvVv~Das~tr~~l~-p~vl~~l~~y--s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v  223 (379)
T KOG1423|consen  147 QNPRDAAQNADCVVVVVDASATRTPLH-PRVLHMLEEY--SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEV  223 (379)
T ss_pred             hCHHHHHhhCCEEEEEEeccCCcCccC-hHHHHHHHHH--hcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhH
Confidence            122345678999999999996221111 1223334333  4677899999999754221             111  01 


Q ss_pred             HHHHHH---------HcCC----eEEEEeCCCCCCHHHHHHHHHhhcc
Q 030364          138 GELYAQ---------ENGL----SFLETSAKSAHNVNELFYEIGDCTE  172 (178)
Q Consensus       138 ~~~~~~---------~~~~----~~~~~Sa~~~~~i~~~~~~l~~~i~  172 (178)
                      ...+..         ..++    .+|.+||++|+|++++.++|..+..
T Consensus       224 ~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~  271 (379)
T KOG1423|consen  224 QEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAP  271 (379)
T ss_pred             HHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCC
Confidence            111111         0112    4899999999999999999988754

>COG0218 Predicted GTPase [General function prediction only]

Probab=99.83  E-value=5.9e-19  Score=117.43  Aligned_cols=159  Identities=16%  Similarity=0.174  Sum_probs=113.7

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCc----------hhhhccc
Q 030364            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ----------ERYHSLA   76 (178)
Q Consensus         7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~----------~~~~~~~   76 (178)
                      ++....|+++|.+|+|||||+|+|++.+.....+.++|.+.....+.+++.   +.+.|.||.          +.+..+.
T Consensus        21 ~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~~i   97 (200)
T COG0218          21 EDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKKLI   97 (200)
T ss_pred             CCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHHHH
Confidence            345779999999999999999999998866667888888888888888775   669999994          2333444


Q ss_pred             hhhhcC---CcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHH----cCCe-
Q 030364           77 PMYYRG---AAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQE----NGLS-  148 (178)
Q Consensus        77 ~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~----~~~~-  148 (178)
                      ..|++.   ..++++++|+..+-.-... .+++-+..   .+.|++|++||+|.....+... .....++.    .... 
T Consensus        98 ~~YL~~R~~L~~vvlliD~r~~~~~~D~-em~~~l~~---~~i~~~vv~tK~DKi~~~~~~k-~l~~v~~~l~~~~~~~~  172 (200)
T COG0218          98 EEYLEKRANLKGVVLLIDARHPPKDLDR-EMIEFLLE---LGIPVIVVLTKADKLKKSERNK-QLNKVAEELKKPPPDDQ  172 (200)
T ss_pred             HHHHhhchhheEEEEEEECCCCCcHHHH-HHHHHHHH---cCCCeEEEEEccccCChhHHHH-HHHHHHHHhcCCCCccc
Confidence            455543   4688999999875433221 33333333   4889999999999876544321 11222222    2222 


Q ss_pred             -EEEEeCCCCCCHHHHHHHHHhhccc
Q 030364          149 -FLETSAKSAHNVNELFYEIGDCTEC  173 (178)
Q Consensus       149 -~~~~Sa~~~~~i~~~~~~l~~~i~~  173 (178)
                       ++..|+.++.|++++...|.+.+..
T Consensus       173 ~~~~~ss~~k~Gi~~l~~~i~~~~~~  198 (200)
T COG0218         173 WVVLFSSLKKKGIDELKAKILEWLKE  198 (200)
T ss_pred             eEEEEecccccCHHHHHHHHHHHhhc
Confidence             7889999999999999999987764

>PRK12736 elongation factor Tu; Reviewed

Probab=99.83  E-value=3.9e-19  Score=133.24  Aligned_cols=164  Identities=17%  Similarity=0.166  Sum_probs=109.4

Q ss_pred             CCCCceeEEEEEcCCCCCHHHHHHHHHhCcCC--------------CCccCceeeeEEEEEEEeCCeEEEEEEEeCCCch
Q 030364            5 SNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFF--------------DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE   70 (178)
Q Consensus         5 ~~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~   70 (178)
                      ...++.++|+++|+.++|||||+++|++....              ...+...+.+.......+......+.++|+||++
T Consensus         7 ~~~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~   86 (394)
T PRK12736          7 DRSKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHA   86 (394)
T ss_pred             ccCCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHH
Confidence            34567899999999999999999999863110              0011123334444444554455677899999999


Q ss_pred             hhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCce-EEEEEeCCCCccccccC---HHHHHHHHHHcC
Q 030364           71 RYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLI-MFLVANKVDLEEKRKVK---NEEGELYAQENG  146 (178)
Q Consensus        71 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-~ivv~nK~D~~~~~~~~---~~~~~~~~~~~~  146 (178)
                      +|.......+..+|++++|+|+.+... ......+..+...   +.| +++++||+|+.+..+..   .++...+.+..+
T Consensus        87 ~f~~~~~~~~~~~d~~llVvd~~~g~~-~~t~~~~~~~~~~---g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~  162 (394)
T PRK12736         87 DYVKNMITGAAQMDGAILVVAATDGPM-PQTREHILLARQV---GVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYD  162 (394)
T ss_pred             HHHHHHHHHHhhCCEEEEEEECCCCCc-hhHHHHHHHHHHc---CCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhC
Confidence            887777777788999999999986422 1222333334333   566 67889999986433221   123334444443


Q ss_pred             -----CeEEEEeCCCCC--------CHHHHHHHHHhhcc
Q 030364          147 -----LSFLETSAKSAH--------NVNELFYEIGDCTE  172 (178)
Q Consensus       147 -----~~~~~~Sa~~~~--------~i~~~~~~l~~~i~  172 (178)
                           ++++++||++|.        ++.++++.|.+.+.
T Consensus       163 ~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp  201 (394)
T PRK12736        163 FPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP  201 (394)
T ss_pred             CCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence                 589999999983        67888888887664

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=99.83  E-value=8e-20  Score=127.03  Aligned_cols=149  Identities=16%  Similarity=0.139  Sum_probs=92.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCcC--C---------------------------CCccCceeeeEEEEEEEeCCeEEEEE
Q 030364           12 KLVLLGDMGTGKTSLVLRFVKGQF--F---------------------------DFQESTIGAAFFTQVLSLNEVTIKFD   62 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~~~~--~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~   62 (178)
                      +|+++|++++|||||+.+|+...-  .                           ...+...+.+.......+......+.
T Consensus         1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~   80 (219)
T cd01883           1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT   80 (219)
T ss_pred             CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence            589999999999999999864211  0                           00011122223333333434457788


Q ss_pred             EEeCCCchhhhccchhhhcCCcEEEEEEECCCHhH------HHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccc--cc-
Q 030364           63 IWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDS------FERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR--KV-  133 (178)
Q Consensus        63 i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s------~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~--~~-  133 (178)
                      +||+||+..+.......+..+|++++|+|+++...      .......+......  ...|+++++||+|+....  .. 
T Consensus        81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~iiivvNK~Dl~~~~~~~~~  158 (219)
T cd01883          81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTL--GVKQLIVAVNKMDDVTVNWSEER  158 (219)
T ss_pred             EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHc--CCCeEEEEEEccccccccccHHH
Confidence            99999998887766777788999999999998521      11122222222222  236789999999987321  10 


Q ss_pred             ---CHHHHHHHHHHc-----CCeEEEEeCCCCCCHHH
Q 030364          134 ---KNEEGELYAQEN-----GLSFLETSAKSAHNVNE  162 (178)
Q Consensus       134 ---~~~~~~~~~~~~-----~~~~~~~Sa~~~~~i~~  162 (178)
                         ..++...+....     .++++++||++|.|+++
T Consensus       159 ~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~~  195 (219)
T cd01883         159 YDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLIE  195 (219)
T ss_pred             HHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCCc
Confidence               011222223333     36799999999999873

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=99.82  E-value=3.8e-19  Score=113.39  Aligned_cols=135  Identities=21%  Similarity=0.252  Sum_probs=94.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCc----hhhhccchhhhcCCcEEE
Q 030364           12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ----ERYHSLAPMYYRGAAAAV   87 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~----~~~~~~~~~~~~~~d~~i   87 (178)
                      ||+++|+.|||||||+++|.+....  +..|....       +     .=.++||||.    ..+.........++|.++
T Consensus         3 rimliG~~g~GKTTL~q~L~~~~~~--~~KTq~i~-------~-----~~~~IDTPGEyiE~~~~y~aLi~ta~dad~V~   68 (143)
T PF10662_consen    3 RIMLIGPSGSGKTTLAQALNGEEIR--YKKTQAIE-------Y-----YDNTIDTPGEYIENPRFYHALIVTAQDADVVL   68 (143)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCCCC--cCccceeE-------e-----cccEEECChhheeCHHHHHHHHHHHhhCCEEE
Confidence            8999999999999999999876542  22332211       1     1136999994    333333344567899999


Q ss_pred             EEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCC-eEEEEeCCCCCCHHHHHHH
Q 030364           88 VVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGL-SFLETSAKSAHNVNELFYE  166 (178)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~  166 (178)
                      ++.|++++.+.-.     ..+...  -..|++=|+||+|+... ....+....+.+.-|+ ++|.+|+.+|+|++++.++
T Consensus        69 ll~dat~~~~~~p-----P~fa~~--f~~pvIGVITK~Dl~~~-~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~~  140 (143)
T PF10662_consen   69 LLQDATEPRSVFP-----PGFASM--FNKPVIGVITKIDLPSD-DANIERAKKWLKNAGVKEIFEVSAVTGEGIEELKDY  140 (143)
T ss_pred             EEecCCCCCccCC-----chhhcc--cCCCEEEEEECccCccc-hhhHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHHH
Confidence            9999998653211     111111  25789999999999732 2234566667777776 6799999999999999998


Q ss_pred             HH
Q 030364          167 IG  168 (178)
Q Consensus       167 l~  168 (178)
                      |.
T Consensus       141 L~  142 (143)
T PF10662_consen  141 LE  142 (143)
T ss_pred             Hh
Confidence            75

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>PRK12735 elongation factor Tu; Reviewed

Probab=99.82  E-value=9.4e-19  Score=131.28  Aligned_cols=164  Identities=15%  Similarity=0.147  Sum_probs=108.0

Q ss_pred             CCCCceeEEEEEcCCCCCHHHHHHHHHhC-------cCC-------CCccCceeeeEEEEEEEeCCeEEEEEEEeCCCch
Q 030364            5 SNKNIQVKLVLLGDMGTGKTSLVLRFVKG-------QFF-------DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE   70 (178)
Q Consensus         5 ~~~~~~~~i~v~G~~~~GKStl~~~l~~~-------~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~   70 (178)
                      ....+.++|+++|++++|||||+++|++.       .+.       ...+...+.+.......+.....++.|+|+||+.
T Consensus         7 ~~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~   86 (396)
T PRK12735          7 ERTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHA   86 (396)
T ss_pred             CCCCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHH
Confidence            44567999999999999999999999862       100       0011123333334444444445677899999998


Q ss_pred             hhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEE-EEEeCCCCccccccC---HHHHHHHHHHc-
Q 030364           71 RYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMF-LVANKVDLEEKRKVK---NEEGELYAQEN-  145 (178)
Q Consensus        71 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~i-vv~nK~D~~~~~~~~---~~~~~~~~~~~-  145 (178)
                      .|.......+..+|++++|+|+.+... .....++..+..   .+.|.+ +++||+|+.+..+..   ..+...+.... 
T Consensus        87 ~f~~~~~~~~~~aD~~llVvda~~g~~-~qt~e~l~~~~~---~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~  162 (396)
T PRK12735         87 DYVKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYD  162 (396)
T ss_pred             HHHHHHHhhhccCCEEEEEEECCCCCc-hhHHHHHHHHHH---cCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcC
Confidence            887766677889999999999987432 222233333333   356755 579999986422211   12334444443 


Q ss_pred             ----CCeEEEEeCCCCC----------CHHHHHHHHHhhcc
Q 030364          146 ----GLSFLETSAKSAH----------NVNELFYEIGDCTE  172 (178)
Q Consensus       146 ----~~~~~~~Sa~~~~----------~i~~~~~~l~~~i~  172 (178)
                          +++++++||++|.          ++.++++.|.+.+.
T Consensus       163 ~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~  203 (396)
T PRK12735        163 FPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIP  203 (396)
T ss_pred             CCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcCC
Confidence                2689999999984          67888888877653

>TIGR00485 EF-Tu translation elongation factor TU

Probab=99.82  E-value=6.7e-19  Score=132.12  Aligned_cols=161  Identities=16%  Similarity=0.163  Sum_probs=104.3

Q ss_pred             CCCCceeEEEEEcCCCCCHHHHHHHHHhCc-------C-----CC--CccCceeeeEEEEEEEeCCeEEEEEEEeCCCch
Q 030364            5 SNKNIQVKLVLLGDMGTGKTSLVLRFVKGQ-------F-----FD--FQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE   70 (178)
Q Consensus         5 ~~~~~~~~i~v~G~~~~GKStl~~~l~~~~-------~-----~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~   70 (178)
                      .+.++.++|+++|+.++|||||+++|++..       .     ..  ..+...+.+.......+.....++.+||+||++
T Consensus         7 ~~~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~   86 (394)
T TIGR00485         7 ERTKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHA   86 (394)
T ss_pred             cCCCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchH
Confidence            345679999999999999999999997420       0     00  011223334444455555556778899999999


Q ss_pred             hhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEE-EEEeCCCCccccccC---HHHHHHHHHHcC
Q 030364           71 RYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMF-LVANKVDLEEKRKVK---NEEGELYAQENG  146 (178)
Q Consensus        71 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~i-vv~nK~D~~~~~~~~---~~~~~~~~~~~~  146 (178)
                      +|..........+|++++|+|+.++... .....+..+...   +.|.+ +++||+|+.+..+..   .++...+....+
T Consensus        87 ~f~~~~~~~~~~~D~~ilVvda~~g~~~-qt~e~l~~~~~~---gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~  162 (394)
T TIGR00485        87 DYVKNMITGAAQMDGAILVVSATDGPMP-QTREHILLARQV---GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYD  162 (394)
T ss_pred             HHHHHHHHHHhhCCEEEEEEECCCCCcH-HHHHHHHHHHHc---CCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcC
Confidence            8877666667788999999999874221 122333334333   55655 689999986533221   123445555544


Q ss_pred             -----CeEEEEeCCCCC--------CHHHHHHHHHh
Q 030364          147 -----LSFLETSAKSAH--------NVNELFYEIGD  169 (178)
Q Consensus       147 -----~~~~~~Sa~~~~--------~i~~~~~~l~~  169 (178)
                           ++++++||++|.        ++.+++++|.+
T Consensus       163 ~~~~~~~ii~vSa~~g~~g~~~~~~~~~~ll~~l~~  198 (394)
T TIGR00485       163 FPGDDTPIIRGSALKALEGDAEWEAKILELMDAVDE  198 (394)
T ss_pred             CCccCccEEECccccccccCCchhHhHHHHHHHHHh
Confidence                 789999999874        34455555544

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>COG2262 HflX GTPases [General function prediction only]

Probab=99.81  E-value=2.2e-18  Score=125.39  Aligned_cols=161  Identities=19%  Similarity=0.142  Sum_probs=117.8

Q ss_pred             CCCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCch---------hhhccc
Q 030364            6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE---------RYHSLA   76 (178)
Q Consensus         6 ~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~---------~~~~~~   76 (178)
                      .+.....|.++|..|+|||||+|.|++........-..+.+.....+.+.+ ...+.+.||.|.-         .|.+. 
T Consensus       188 ~~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFksT-  265 (411)
T COG2262         188 SRSGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKST-  265 (411)
T ss_pred             cccCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-CceEEEecCccCcccCChHHHHHHHHH-
Confidence            345578999999999999999999997665544444445555566666665 3466799999942         12211 


Q ss_pred             hhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCC
Q 030364           77 PMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKS  156 (178)
Q Consensus        77 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  156 (178)
                      -.-...+|+++.|+|++++...+.+......+......+.|+++|.||.|+.....    .......... ..+.+||++
T Consensus       266 LEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~----~~~~~~~~~~-~~v~iSA~~  340 (411)
T COG2262         266 LEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEE----ILAELERGSP-NPVFISAKT  340 (411)
T ss_pred             HHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchh----hhhhhhhcCC-CeEEEEecc
Confidence            12246799999999999998888888888888887677899999999999754333    1111111112 589999999


Q ss_pred             CCCHHHHHHHHHhhccc
Q 030364          157 AHNVNELFYEIGDCTEC  173 (178)
Q Consensus       157 ~~~i~~~~~~l~~~i~~  173 (178)
                      |.|++.+.+.|.+.+..
T Consensus       341 ~~gl~~L~~~i~~~l~~  357 (411)
T COG2262         341 GEGLDLLRERIIELLSG  357 (411)
T ss_pred             CcCHHHHHHHHHHHhhh
Confidence            99999999999998774

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=99.81  E-value=2.4e-18  Score=132.18  Aligned_cols=154  Identities=21%  Similarity=0.204  Sum_probs=107.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhc------cchhhh--c
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHS------LAPMYY--R   81 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~------~~~~~~--~   81 (178)
                      ..+|+++|+||+|||||+|+|++....-  ..-.|.++..++.........+++.|.||.-....      ....++  .
T Consensus         3 ~~~valvGNPNvGKTtlFN~LTG~~q~V--gNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~   80 (653)
T COG0370           3 KLTVALVGNPNVGKTTLFNALTGANQKV--GNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEG   80 (653)
T ss_pred             cceEEEecCCCccHHHHHHHHhccCcee--cCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhcC
Confidence            5679999999999999999999865432  22234444444444433334577999999532222      223333  4


Q ss_pred             CCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHH
Q 030364           82 GAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVN  161 (178)
Q Consensus        82 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  161 (178)
                      .+|++|-|+|+++-+-   --.+-.++.+.   +.|++++.|++|.....-+ ......+.+.+|+|++++||++|.|++
T Consensus        81 ~~D~ivnVvDAtnLeR---nLyltlQLlE~---g~p~ilaLNm~D~A~~~Gi-~ID~~~L~~~LGvPVv~tvA~~g~G~~  153 (653)
T COG0370          81 KPDLIVNVVDATNLER---NLYLTLQLLEL---GIPMILALNMIDEAKKRGI-RIDIEKLSKLLGVPVVPTVAKRGEGLE  153 (653)
T ss_pred             CCCEEEEEcccchHHH---HHHHHHHHHHc---CCCeEEEeccHhhHHhcCC-cccHHHHHHHhCCCEEEEEeecCCCHH
Confidence            5799999999998542   11222333333   7789999999998664433 355677888899999999999999999


Q ss_pred             HHHHHHHhhcc
Q 030364          162 ELFYEIGDCTE  172 (178)
Q Consensus       162 ~~~~~l~~~i~  172 (178)
                      +++.++.+..+
T Consensus       154 ~l~~~i~~~~~  164 (653)
T COG0370         154 ELKRAIIELAE  164 (653)
T ss_pred             HHHHHHHHhcc
Confidence            99999986544

>cd04165 GTPBP1_like GTPBP1-like

Probab=99.81  E-value=3.1e-18  Score=119.03  Aligned_cols=154  Identities=16%  Similarity=0.196  Sum_probs=96.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCcCCCCccCc-----------------------eeeeEEEEE-------------EEeC
Q 030364           12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQEST-----------------------IGAAFFTQV-------------LSLN   55 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~-----------------------~~~~~~~~~-------------~~~~   55 (178)
                      ||+++|+.++|||||++++..+.+.......                       .+.+.....             ..+.
T Consensus         1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~   80 (224)
T cd04165           1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE   80 (224)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence            6899999999999999999976553211100                       000000000             0111


Q ss_pred             CeEEEEEEEeCCCchhhhccchhhhc--CCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccc
Q 030364           56 EVTIKFDIWDTAGQERYHSLAPMYYR--GAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKV  133 (178)
Q Consensus        56 ~~~~~~~i~d~~g~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~  133 (178)
                      .....+.++|+||++.|.......+.  .+|++++|+|+..+.. .....++..+...   +.|+++++||+|+.+....
T Consensus        81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~-~~d~~~l~~l~~~---~ip~ivvvNK~D~~~~~~~  156 (224)
T cd04165          81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGII-GMTKEHLGLALAL---NIPVFVVVTKIDLAPANIL  156 (224)
T ss_pred             eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCEEEEEECccccCHHHH
Confidence            12356789999999888765554454  6899999999886532 2223344444433   5789999999998543222


Q ss_pred             CH--HHHHHHHH--------------------------HcCCeEEEEeCCCCCCHHHHHHHHHh
Q 030364          134 KN--EEGELYAQ--------------------------ENGLSFLETSAKSAHNVNELFYEIGD  169 (178)
Q Consensus       134 ~~--~~~~~~~~--------------------------~~~~~~~~~Sa~~~~~i~~~~~~l~~  169 (178)
                      ..  .+...+..                          ...+|++.+||.+|+|++++...|..
T Consensus       157 ~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~  220 (224)
T cd04165         157 QETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL  220 (224)
T ss_pred             HHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence            11  11111211                          11248999999999999999987754

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.80  E-value=1.7e-18  Score=127.66  Aligned_cols=159  Identities=21%  Similarity=0.185  Sum_probs=107.9

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEE--EEEEEeCCeEEEEEEEeCCCchhh----------hc-c
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFF--TQVLSLNEVTIKFDIWDTAGQERY----------HS-L   75 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~d~~g~~~~----------~~-~   75 (178)
                      ..+||+++|.||+|||||+|++++.+-.- ..+..+++..  ...+.+++.  ++.++||.|...-          .. -
T Consensus       177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~I-v~~~aGTTRD~I~~~~e~~~~--~~~liDTAGiRrk~ki~e~~E~~Sv~r  253 (444)
T COG1160         177 DPIKIAIIGRPNVGKSSLINAILGEERVI-VSDIAGTTRDSIDIEFERDGR--KYVLIDTAGIRRKGKITESVEKYSVAR  253 (444)
T ss_pred             CceEEEEEeCCCCCchHHHHHhccCceEE-ecCCCCccccceeeeEEECCe--EEEEEECCCCCcccccccceEEEeehh
Confidence            46999999999999999999999765321 3344444444  444455564  4569999995322          11 1


Q ss_pred             chhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHH-----HcCCeEE
Q 030364           76 APMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQ-----ENGLSFL  150 (178)
Q Consensus        76 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~  150 (178)
                      ....+..+|++++|+|++.+-+-... +....+..   .+.++++|+||.|+.+......++.....+     -..++++
T Consensus       254 t~~aI~~a~vvllviDa~~~~~~qD~-~ia~~i~~---~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~  329 (444)
T COG1160         254 TLKAIERADVVLLVIDATEGISEQDL-RIAGLIEE---AGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIV  329 (444)
T ss_pred             hHhHHhhcCEEEEEEECCCCchHHHH-HHHHHHHH---cCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEE
Confidence            23457789999999999987654442 22233333   477899999999987653333333222221     1236999


Q ss_pred             EEeCCCCCCHHHHHHHHHhhcccc
Q 030364          151 ETSAKSAHNVNELFYEIGDCTECF  174 (178)
Q Consensus       151 ~~Sa~~~~~i~~~~~~l~~~i~~~  174 (178)
                      .+||++|.++..+|+++.+....+
T Consensus       330 ~iSA~~~~~i~~l~~~i~~~~~~~  353 (444)
T COG1160         330 FISALTGQGLDKLFEAIKEIYECA  353 (444)
T ss_pred             EEEecCCCChHHHHHHHHHHHHHh
Confidence            999999999999999998876654

>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=99.80  E-value=4e-18  Score=119.99  Aligned_cols=155  Identities=17%  Similarity=0.181  Sum_probs=109.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCcCC-CCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhcc-------chhhhcC
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVKGQFF-DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSL-------APMYYRG   82 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~-------~~~~~~~   82 (178)
                      ..|.++|.||+|||||++++...+.. ..|..| +.....-.+.+++. ..+.+-|.||.-+-.++       .-..++.
T Consensus       197 advGLVG~PNAGKSTLL~als~AKpkVa~YaFT-TL~P~iG~v~yddf-~q~tVADiPGiI~GAh~nkGlG~~FLrHiER  274 (366)
T KOG1489|consen  197 ADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFT-TLRPHIGTVNYDDF-SQITVADIPGIIEGAHMNKGLGYKFLRHIER  274 (366)
T ss_pred             cccceecCCCCcHHHHHHHhhccCCccccccee-eeccccceeecccc-ceeEeccCccccccccccCcccHHHHHHHHh
Confidence            36789999999999999999986653 223222 22222233444443 34889999996322221       2233577


Q ss_pred             CcEEEEEEECCCH---hHHHHHHHHHHHHHHhC--CCCceEEEEEeCCCCccccccCHHHHHHHHHHcCC-eEEEEeCCC
Q 030364           83 AAAAVVVYDITSM---DSFERAKKWVQELQRQG--NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGL-SFLETSAKS  156 (178)
Q Consensus        83 ~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~--~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~  156 (178)
                      ++.++||+|++.+   ..|+.++.+..++..+.  ..+.|.++|+||+|++++..   .....+.+...- .++++||++
T Consensus       275 ~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~---~~l~~L~~~lq~~~V~pvsA~~  351 (366)
T KOG1489|consen  275 CKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEK---NLLSSLAKRLQNPHVVPVSAKS  351 (366)
T ss_pred             hceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHH---HHHHHHHHHcCCCcEEEeeecc
Confidence            9999999999988   88888888887776543  57899999999999863221   123455555554 499999999


Q ss_pred             CCCHHHHHHHHHhh
Q 030364          157 AHNVNELFYEIGDC  170 (178)
Q Consensus       157 ~~~i~~~~~~l~~~  170 (178)
                      ++|+.++++.|.+.
T Consensus       352 ~egl~~ll~~lr~~  365 (366)
T KOG1489|consen  352 GEGLEELLNGLREL  365 (366)
T ss_pred             ccchHHHHHHHhhc
Confidence            99999999888654

>CHL00071 tufA elongation factor Tu

Probab=99.80  E-value=6.6e-18  Score=127.22  Aligned_cols=150  Identities=15%  Similarity=0.124  Sum_probs=99.1

Q ss_pred             CCCCceeEEEEEcCCCCCHHHHHHHHHhCcCC--------------CCccCceeeeEEEEEEEeCCeEEEEEEEeCCCch
Q 030364            5 SNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFF--------------DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE   70 (178)
Q Consensus         5 ~~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~   70 (178)
                      ..+.+.++|+++|++++|||||+++|++....              ...+...+.+.......+.....++.++|+||+.
T Consensus         7 ~~~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~   86 (409)
T CHL00071          7 ERKKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHA   86 (409)
T ss_pred             cCCCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChH
Confidence            34567899999999999999999999864110              0011123333433344444445677899999998


Q ss_pred             hhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCce-EEEEEeCCCCccccccCH---HHHHHHHHHcC
Q 030364           71 RYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLI-MFLVANKVDLEEKRKVKN---EEGELYAQENG  146 (178)
Q Consensus        71 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-~ivv~nK~D~~~~~~~~~---~~~~~~~~~~~  146 (178)
                      .|.......+..+|++++|+|+..... ......+..+...   +.| +++++||+|+.+..+...   .+...+.+..+
T Consensus        87 ~~~~~~~~~~~~~D~~ilVvda~~g~~-~qt~~~~~~~~~~---g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~  162 (409)
T CHL00071         87 DYVKNMITGAAQMDGAILVVSAADGPM-PQTKEHILLAKQV---GVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYD  162 (409)
T ss_pred             HHHHHHHHHHHhCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhC
Confidence            887777777889999999999986432 2223333444333   567 678899999865332211   23333444332


Q ss_pred             -----CeEEEEeCCCCC
Q 030364          147 -----LSFLETSAKSAH  158 (178)
Q Consensus       147 -----~~~~~~Sa~~~~  158 (178)
                           ++++.+||.+|.
T Consensus       163 ~~~~~~~ii~~Sa~~g~  179 (409)
T CHL00071        163 FPGDDIPIVSGSALLAL  179 (409)
T ss_pred             CCCCcceEEEcchhhcc
Confidence                 689999999886

>PRK00049 elongation factor Tu; Reviewed

Probab=99.79  E-value=1.1e-17  Score=125.47  Aligned_cols=164  Identities=15%  Similarity=0.135  Sum_probs=107.7

Q ss_pred             CCCCceeEEEEEcCCCCCHHHHHHHHHhCcCC--------------CCccCceeeeEEEEEEEeCCeEEEEEEEeCCCch
Q 030364            5 SNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFF--------------DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE   70 (178)
Q Consensus         5 ~~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~   70 (178)
                      ....+.++|+++|+.++|||||+++|++....              ...+...+.+.......+.....++.++|+||+.
T Consensus         7 ~~~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~   86 (396)
T PRK00049          7 ERTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHA   86 (396)
T ss_pred             cCCCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHH
Confidence            34567999999999999999999999863110              0011123334444444454445677899999998


Q ss_pred             hhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEE-EEEeCCCCccccccC---HHHHHHHHHHc-
Q 030364           71 RYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMF-LVANKVDLEEKRKVK---NEEGELYAQEN-  145 (178)
Q Consensus        71 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~i-vv~nK~D~~~~~~~~---~~~~~~~~~~~-  145 (178)
                      .|.......+..+|++++|+|+.++.. ......+..+...   +.|.+ +++||+|+.+..+..   ..+...+.... 
T Consensus        87 ~f~~~~~~~~~~aD~~llVVDa~~g~~-~qt~~~~~~~~~~---g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~  162 (396)
T PRK00049         87 DYVKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQV---GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYD  162 (396)
T ss_pred             HHHHHHHhhhccCCEEEEEEECCCCCc-hHHHHHHHHHHHc---CCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcC
Confidence            887777777889999999999987432 2223334444433   56765 579999986422211   11222333322 


Q ss_pred             ----CCeEEEEeCCCCC----------CHHHHHHHHHhhcc
Q 030364          146 ----GLSFLETSAKSAH----------NVNELFYEIGDCTE  172 (178)
Q Consensus       146 ----~~~~~~~Sa~~~~----------~i~~~~~~l~~~i~  172 (178)
                          +++++.+||++|.          ++.++++.|.+.+.
T Consensus       163 ~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~~  203 (396)
T PRK00049        163 FPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYIP  203 (396)
T ss_pred             CCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcCC
Confidence                3689999999875          57788888877553

>PLN03126 Elongation factor Tu; Provisional

Probab=99.79  E-value=9.6e-18  Score=127.73  Aligned_cols=150  Identities=16%  Similarity=0.129  Sum_probs=98.5

Q ss_pred             CCCCceeEEEEEcCCCCCHHHHHHHHHhCc------CCC--------CccCceeeeEEEEEEEeCCeEEEEEEEeCCCch
Q 030364            5 SNKNIQVKLVLLGDMGTGKTSLVLRFVKGQ------FFD--------FQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE   70 (178)
Q Consensus         5 ~~~~~~~~i~v~G~~~~GKStl~~~l~~~~------~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~   70 (178)
                      ..+.+.++|+++|++++|||||+++|+...      ...        ..+...+.+.......+......+.++|+||++
T Consensus        76 ~~~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~  155 (478)
T PLN03126         76 ERKKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHA  155 (478)
T ss_pred             hccCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHH
Confidence            345678999999999999999999998521      100        012223333333333343344577899999999


Q ss_pred             hhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCce-EEEEEeCCCCccccccCH---HHHHHHHHHc-
Q 030364           71 RYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLI-MFLVANKVDLEEKRKVKN---EEGELYAQEN-  145 (178)
Q Consensus        71 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-~ivv~nK~D~~~~~~~~~---~~~~~~~~~~-  145 (178)
                      +|.......+..+|++++|+|+.+... ....+++..+...   +.| +++++||+|+.+..+...   ++...+.+.. 
T Consensus       156 ~f~~~~~~g~~~aD~ailVVda~~G~~-~qt~e~~~~~~~~---gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g  231 (478)
T PLN03126        156 DYVKNMITGAAQMDGAILVVSGADGPM-PQTKEHILLAKQV---GVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYE  231 (478)
T ss_pred             HHHHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcC
Confidence            998877777889999999999997532 2223444444433   566 678899999865322211   2333343332 


Q ss_pred             ----CCeEEEEeCCCCC
Q 030364          146 ----GLSFLETSAKSAH  158 (178)
Q Consensus       146 ----~~~~~~~Sa~~~~  158 (178)
                          +++++.+|+.+|.
T Consensus       232 ~~~~~~~~vp~Sa~~g~  248 (478)
T PLN03126        232 FPGDDIPIISGSALLAL  248 (478)
T ss_pred             CCcCcceEEEEEccccc
Confidence                4689999998874

>cd04169 RF3 RF3 subfamily

Probab=99.78  E-value=1.9e-17  Score=117.98  Aligned_cols=116  Identities=17%  Similarity=0.185  Sum_probs=80.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCcCC-CCc-------------------cCceeeeEEEEEEEeCCeEEEEEEEeCCCch
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVKGQFF-DFQ-------------------ESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE   70 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~~~~~-~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~   70 (178)
                      .+|+++|++|+|||||+++|+...-. ...                   ....+.+.......+....+++.+|||||+.
T Consensus         3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~   82 (267)
T cd04169           3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE   82 (267)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence            58999999999999999999853110 000                   0011223334444555566888999999999


Q ss_pred             hhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccc
Q 030364           71 RYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEK  130 (178)
Q Consensus        71 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~  130 (178)
                      +|.......++.+|++++|+|+++.... ....++.....   .+.|+++++||+|+...
T Consensus        83 df~~~~~~~l~~aD~~IlVvda~~g~~~-~~~~i~~~~~~---~~~P~iivvNK~D~~~a  138 (267)
T cd04169          83 DFSEDTYRTLTAVDSAVMVIDAAKGVEP-QTRKLFEVCRL---RGIPIITFINKLDREGR  138 (267)
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCccH-HHHHHHHHHHh---cCCCEEEEEECCccCCC
Confidence            8887777788999999999999875321 22333333322   36899999999998654

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>PLN00043 elongation factor 1-alpha; Provisional

Probab=99.78  E-value=1e-17  Score=126.99  Aligned_cols=153  Identities=17%  Similarity=0.221  Sum_probs=103.2

Q ss_pred             CCCceeEEEEEcCCCCCHHHHHHHHHhCcC--CC---------------------------CccCceeeeEEEEEEEeCC
Q 030364            6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQF--FD---------------------------FQESTIGAAFFTQVLSLNE   56 (178)
Q Consensus         6 ~~~~~~~i~v~G~~~~GKStl~~~l~~~~~--~~---------------------------~~~~~~~~~~~~~~~~~~~   56 (178)
                      .+.+.++|+++|+.++|||||+.+|+...-  ..                           ..+...+.+.......+..
T Consensus         3 ~~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~   82 (447)
T PLN00043          3 KEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFET   82 (447)
T ss_pred             CCCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecC
Confidence            356789999999999999999998875211  00                           0111122233334444555


Q ss_pred             eEEEEEEEeCCCchhhhccchhhhcCCcEEEEEEECCCHhHHH-------HHHHHHHHHHHhCCCCc-eEEEEEeCCCCc
Q 030364           57 VTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFE-------RAKKWVQELQRQGNPNL-IMFLVANKVDLE  128 (178)
Q Consensus        57 ~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~-------~~~~~~~~~~~~~~~~~-~~ivv~nK~D~~  128 (178)
                      ..+.+.++|+||+++|.......+..+|++|+|+|+++. .++       ...+.+......   +. +++|++||+|+.
T Consensus        83 ~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~~~~~~---gi~~iIV~vNKmD~~  158 (447)
T PLN00043         83 TKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHALLAFTL---GVKQMICCCNKMDAT  158 (447)
T ss_pred             CCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHHHHHHc---CCCcEEEEEEcccCC
Confidence            567888999999999999888899999999999999973 232       333333333332   45 468889999975


Q ss_pred             ccc------ccCHHHHHHHHHHcC-----CeEEEEeCCCCCCHHH
Q 030364          129 EKR------KVKNEEGELYAQENG-----LSFLETSAKSAHNVNE  162 (178)
Q Consensus       129 ~~~------~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~  162 (178)
                      ...      ....++...+++..+     ++++++||++|+|+.+
T Consensus       159 ~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~  203 (447)
T PLN00043        159 TPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE  203 (447)
T ss_pred             chhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence            211      011234555555555     6899999999999853

>COG1084 Predicted GTPase [General function prediction only]

Probab=99.77  E-value=2e-17  Score=117.21  Aligned_cols=157  Identities=19%  Similarity=0.214  Sum_probs=108.1

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCc-----hhhhcc---c-hhh
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ-----ERYHSL---A-PMY   79 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~-----~~~~~~---~-~~~   79 (178)
                      ....|+|.|.||+|||||+++++..+..-..-|.++...+...+..++  ..++++||||.     ++.+..   . .+.
T Consensus       167 ~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~--~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL  244 (346)
T COG1084         167 DLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGY--LRIQVIDTPGLLDRPLEERNEIERQAILAL  244 (346)
T ss_pred             CCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCC--ceEEEecCCcccCCChHHhcHHHHHHHHHH
Confidence            467899999999999999999998776543444444444444444444  56779999994     111111   1 111


Q ss_pred             hcCCcEEEEEEECCC--HhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCC
Q 030364           80 YRGAAAAVVVYDITS--MDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSA  157 (178)
Q Consensus        80 ~~~~d~~i~v~d~~~--~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  157 (178)
                      -.-.++++|+||.+.  .-+.+....++.++.....  .|+++|+||+|..+.......+.. +....+.....+++..+
T Consensus       245 ~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~--~p~v~V~nK~D~~~~e~~~~~~~~-~~~~~~~~~~~~~~~~~  321 (346)
T COG1084         245 RHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFK--APIVVVINKIDIADEEKLEEIEAS-VLEEGGEEPLKISATKG  321 (346)
T ss_pred             HHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC--CCeEEEEecccccchhHHHHHHHH-HHhhccccccceeeeeh
Confidence            223678999999995  4567777788888887743  899999999998765544333322 33334445788999999


Q ss_pred             CCHHHHHHHHHhh
Q 030364          158 HNVNELFYEIGDC  170 (178)
Q Consensus       158 ~~i~~~~~~l~~~  170 (178)
                      .+++.+-..+...
T Consensus       322 ~~~d~~~~~v~~~  334 (346)
T COG1084         322 CGLDKLREEVRKT  334 (346)
T ss_pred             hhHHHHHHHHHHH
Confidence            9999887776665

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=99.77  E-value=1.5e-17  Score=115.19  Aligned_cols=113  Identities=18%  Similarity=0.208  Sum_probs=77.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCcCC--CCc------------cCceeeeE--EEEEEEeC--------CeEEEEEEEeCC
Q 030364           12 KLVLLGDMGTGKTSLVLRFVKGQFF--DFQ------------ESTIGAAF--FTQVLSLN--------EVTIKFDIWDTA   67 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~~~~~--~~~------------~~~~~~~~--~~~~~~~~--------~~~~~~~i~d~~   67 (178)
                      +|+++|+.++|||||+.+|+...-.  ...            +...+.+.  ......+.        +..+.+.+||||
T Consensus         2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP   81 (222)
T cd01885           2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP   81 (222)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence            7999999999999999999864311  000            00011111  11112222        447889999999


Q ss_pred             CchhhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCc
Q 030364           68 GQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLE  128 (178)
Q Consensus        68 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~  128 (178)
                      |+..|......+++.+|++++|+|+.++..... ...+.....   .+.|+++++||+|+.
T Consensus        82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t-~~~l~~~~~---~~~p~ilviNKiD~~  138 (222)
T cd01885          82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQT-ETVLRQALK---ERVKPVLVINKIDRL  138 (222)
T ss_pred             CccccHHHHHHHHHhcCeeEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECCCcc
Confidence            999999999999999999999999998654443 222333322   357899999999975

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.77  E-value=2.2e-18  Score=110.25  Aligned_cols=156  Identities=19%  Similarity=0.260  Sum_probs=116.4

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEE
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVV   88 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~   88 (178)
                      +.=|++++|..|+|||||++.|..++... +.||.-.  ......+.+  .+++-+|.+|+...+..|..|+..+|++++
T Consensus        19 K~gKllFlGLDNAGKTTLLHMLKdDrl~q-hvPTlHP--TSE~l~Ig~--m~ftt~DLGGH~qArr~wkdyf~~v~~iv~   93 (193)
T KOG0077|consen   19 KFGKLLFLGLDNAGKTTLLHMLKDDRLGQ-HVPTLHP--TSEELSIGG--MTFTTFDLGGHLQARRVWKDYFPQVDAIVY   93 (193)
T ss_pred             cCceEEEEeecCCchhhHHHHHccccccc-cCCCcCC--ChHHheecC--ceEEEEccccHHHHHHHHHHHHhhhceeEe
Confidence            45689999999999999999998776533 2232221  122334444  678899999999999999999999999999


Q ss_pred             EEECCCHhHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCccccccCHHHHHH------HHHHc--------C---CeEE
Q 030364           89 VYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGEL------YAQEN--------G---LSFL  150 (178)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~------~~~~~--------~---~~~~  150 (178)
                      .+|+.|.+-+.+.+..++.+.... ....|+++++||.|.+.+.  .+++.+.      ++-..        +   +.++
T Consensus        94 lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~--se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evf  171 (193)
T KOG0077|consen   94 LVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAA--SEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVF  171 (193)
T ss_pred             eeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcc--cHHHHHHHHHHHHHhcccccccccCCCCCeEEEE
Confidence            999999999998887777765543 5789999999999987654  2222211      11111        1   2568


Q ss_pred             EEeCCCCCCHHHHHHHHHhhc
Q 030364          151 ETSAKSAHNVNELFYEIGDCT  171 (178)
Q Consensus       151 ~~Sa~~~~~i~~~~~~l~~~i  171 (178)
                      -||...+.|--+.|.|+.+.+
T Consensus       172 mcsi~~~~gy~e~fkwl~qyi  192 (193)
T KOG0077|consen  172 MCSIVRKMGYGEGFKWLSQYI  192 (193)
T ss_pred             EEEEEccCccceeeeehhhhc
Confidence            899999999888888887755

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=99.77  E-value=1.4e-17  Score=118.72  Aligned_cols=113  Identities=19%  Similarity=0.155  Sum_probs=77.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCcC--CC--------------CccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhcc
Q 030364           12 KLVLLGDMGTGKTSLVLRFVKGQF--FD--------------FQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSL   75 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~~~~--~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~   75 (178)
                      +|+++|++++|||||+++|+...-  ..              ..+...+.+.......+....+++.+|||||+..+...
T Consensus         1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~   80 (270)
T cd01886           1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE   80 (270)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence            589999999999999999975211  00              00111222333333333334567889999999888888


Q ss_pred             chhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCc
Q 030364           76 APMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLE  128 (178)
Q Consensus        76 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~  128 (178)
                      +..+++.+|++++|+|+.+...-. ....+..+..   .+.|+++++||+|+.
T Consensus        81 ~~~~l~~aD~ailVVDa~~g~~~~-t~~~~~~~~~---~~~p~ivviNK~D~~  129 (270)
T cd01886          81 VERSLRVLDGAVAVFDAVAGVEPQ-TETVWRQADR---YNVPRIAFVNKMDRT  129 (270)
T ss_pred             HHHHHHHcCEEEEEEECCCCCCHH-HHHHHHHHHH---cCCCEEEEEECCCCC
Confidence            888999999999999998743211 2233344433   367899999999975

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=99.77  E-value=9.2e-18  Score=128.20  Aligned_cols=155  Identities=19%  Similarity=0.197  Sum_probs=96.3

Q ss_pred             CCCceeEEEEEcCCCCCHHHHHHHHHhCcC--CCC-----------c------------------cCceeeeEEEEEEEe
Q 030364            6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQF--FDF-----------Q------------------ESTIGAAFFTQVLSL   54 (178)
Q Consensus         6 ~~~~~~~i~v~G~~~~GKStl~~~l~~~~~--~~~-----------~------------------~~~~~~~~~~~~~~~   54 (178)
                      ..+..++|+++|++++|||||+.+|+...-  ...           .                  +...+.+.......+
T Consensus        23 ~~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~  102 (474)
T PRK05124         23 QHKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYF  102 (474)
T ss_pred             cccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEe
Confidence            346689999999999999999999975421  100           0                  000111222223333


Q ss_pred             CCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccC
Q 030364           55 NEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVK  134 (178)
Q Consensus        55 ~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~  134 (178)
                      .....++.|+|+||+..|.......+..+|++++|+|+..+..-. ....+..+....  ..|+++++||+|+.+..+..
T Consensus       103 ~~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~q-t~~~~~l~~~lg--~~~iIvvvNKiD~~~~~~~~  179 (474)
T PRK05124        103 STEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQ-TRRHSFIATLLG--IKHLVVAVNKMDLVDYSEEV  179 (474)
T ss_pred             ccCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCcccc-chHHHHHHHHhC--CCceEEEEEeeccccchhHH
Confidence            344567889999999888766666679999999999998642211 111112222221  24688999999986432211


Q ss_pred             HH----HHHHHHHHc----CCeEEEEeCCCCCCHHHH
Q 030364          135 NE----EGELYAQEN----GLSFLETSAKSAHNVNEL  163 (178)
Q Consensus       135 ~~----~~~~~~~~~----~~~~~~~Sa~~~~~i~~~  163 (178)
                      .+    +...+.+..    .++++++||++|.|+++.
T Consensus       180 ~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~  216 (474)
T PRK05124        180 FERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ  216 (474)
T ss_pred             HHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence            11    122223322    378999999999998764

>cd01850 CDC_Septin CDC/Septin

Probab=99.77  E-value=3.8e-17  Score=116.94  Aligned_cols=143  Identities=13%  Similarity=0.169  Sum_probs=92.5

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCcCCCC----------ccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhc----
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDF----------QESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHS----   74 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~----   74 (178)
                      ..++|+|+|.+|+|||||+|+|++..+...          ..++.+.......+..++..+.+.+|||||......    
T Consensus         3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~   82 (276)
T cd01850           3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDC   82 (276)
T ss_pred             cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhh
Confidence            368999999999999999999998876543          233444445555566677788999999999432111    


Q ss_pred             ----------------------cchhhhc--CCcEEEEEEECCCHhHHHHH-HHHHHHHHHhCCCCceEEEEEeCCCCcc
Q 030364           75 ----------------------LAPMYYR--GAAAAVVVYDITSMDSFERA-KKWVQELQRQGNPNLIMFLVANKVDLEE  129 (178)
Q Consensus        75 ----------------------~~~~~~~--~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~ivv~nK~D~~~  129 (178)
                                            .+...+.  .+|+++++++.+... +... ...++.+.    ..+|+++|+||+|+..
T Consensus        83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~-l~~~D~~~lk~l~----~~v~vi~VinK~D~l~  157 (276)
T cd01850          83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHG-LKPLDIEFMKRLS----KRVNIIPVIAKADTLT  157 (276)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCC-CCHHHHHHHHHHh----ccCCEEEEEECCCcCC
Confidence                                  1112223  367888888876421 1111 22233332    2688999999999855


Q ss_pred             ccc--cCHHHHHHHHHHcCCeEEEEeCCC
Q 030364          130 KRK--VKNEEGELYAQENGLSFLETSAKS  156 (178)
Q Consensus       130 ~~~--~~~~~~~~~~~~~~~~~~~~Sa~~  156 (178)
                      ..+  .......+.++.++++++......
T Consensus       158 ~~e~~~~k~~i~~~l~~~~i~~~~~~~~~  186 (276)
T cd01850         158 PEELKEFKQRIMEDIEEHNIKIYKFPEDE  186 (276)
T ss_pred             HHHHHHHHHHHHHHHHHcCCceECCCCCc
Confidence            332  233445666777888888776543

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=99.77  E-value=2.3e-17  Score=127.08  Aligned_cols=117  Identities=17%  Similarity=0.245  Sum_probs=80.8

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHHh--CcCCC------------------CccCceeeeEEEEEEEeCCeEEEEEEEeCC
Q 030364            8 NIQVKLVLLGDMGTGKTSLVLRFVK--GQFFD------------------FQESTIGAAFFTQVLSLNEVTIKFDIWDTA   67 (178)
Q Consensus         8 ~~~~~i~v~G~~~~GKStl~~~l~~--~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~   67 (178)
                      ....+|+++|++++|||||.++|+.  +....                  ......+.........+....+.+.+||||
T Consensus         8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTP   87 (526)
T PRK00741          8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTP   87 (526)
T ss_pred             hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECC
Confidence            4577999999999999999999974  11100                  000111222333334444455788899999


Q ss_pred             CchhhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCc
Q 030364           68 GQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLE  128 (178)
Q Consensus        68 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~  128 (178)
                      |+..|......++..+|++|+|+|+++... .....++.....   .+.|+++++||+|+.
T Consensus        88 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~~~---~~iPiiv~iNK~D~~  144 (526)
T PRK00741         88 GHEDFSEDTYRTLTAVDSALMVIDAAKGVE-PQTRKLMEVCRL---RDTPIFTFINKLDRD  144 (526)
T ss_pred             CchhhHHHHHHHHHHCCEEEEEEecCCCCC-HHHHHHHHHHHh---cCCCEEEEEECCccc
Confidence            999988877788999999999999987532 223333333332   478999999999975

>PLN03127 Elongation factor Tu; Provisional

Probab=99.76  E-value=3.2e-17  Score=124.24  Aligned_cols=164  Identities=15%  Similarity=0.161  Sum_probs=104.0

Q ss_pred             CCCCceeEEEEEcCCCCCHHHHHHHHHhC------cCC------C--CccCceeeeEEEEEEEeCCeEEEEEEEeCCCch
Q 030364            5 SNKNIQVKLVLLGDMGTGKTSLVLRFVKG------QFF------D--FQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE   70 (178)
Q Consensus         5 ~~~~~~~~i~v~G~~~~GKStl~~~l~~~------~~~------~--~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~   70 (178)
                      ....+.++|+++|+.++|||||+++|.+.      ...      .  ..+...+.+.......+.....++.++|+||+.
T Consensus        56 ~~~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~  135 (447)
T PLN03127         56 TRTKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHA  135 (447)
T ss_pred             hcCCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCcc
Confidence            34567899999999999999999999731      100      0  011123334444444555555678899999998


Q ss_pred             hhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCce-EEEEEeCCCCccccccCH---HHHHHHHHHc-
Q 030364           71 RYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLI-MFLVANKVDLEEKRKVKN---EEGELYAQEN-  145 (178)
Q Consensus        71 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-~ivv~nK~D~~~~~~~~~---~~~~~~~~~~-  145 (178)
                      .|.......+..+|++++|+|+.+... ......+..+...   +.| +++++||+|+.+..+...   .+...+.... 
T Consensus       136 ~f~~~~~~g~~~aD~allVVda~~g~~-~qt~e~l~~~~~~---gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~  211 (447)
T PLN03127        136 DYVKNMITGAAQMDGGILVVSAPDGPM-PQTKEHILLARQV---GVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYK  211 (447)
T ss_pred             chHHHHHHHHhhCCEEEEEEECCCCCc-hhHHHHHHHHHHc---CCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhC
Confidence            887766666778999999999986432 2223333444333   567 467899999864322111   1222222221 


Q ss_pred             ----CCeEEEEeCC---CCCC-------HHHHHHHHHhhcc
Q 030364          146 ----GLSFLETSAK---SAHN-------VNELFYEIGDCTE  172 (178)
Q Consensus       146 ----~~~~~~~Sa~---~~~~-------i~~~~~~l~~~i~  172 (178)
                          .++++.+|+.   +|.|       +.+++++|.+.+.
T Consensus       212 ~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp  252 (447)
T PLN03127        212 FPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIP  252 (447)
T ss_pred             CCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCC
Confidence                3688888875   4554       7788888877654

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=99.76  E-value=5.3e-18  Score=127.60  Aligned_cols=168  Identities=23%  Similarity=0.298  Sum_probs=121.2

Q ss_pred             CCCCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCc
Q 030364            5 SNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAA   84 (178)
Q Consensus         5 ~~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d   84 (178)
                      ....+.+||+++|..|+|||||+-.+...++.+...+.......+....-+  .+...+.|++..++-+.....-++.+|
T Consensus         4 ~~t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IPadvtPe--~vpt~ivD~ss~~~~~~~l~~EirkA~   81 (625)
T KOG1707|consen    4 DETLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIPADVTPE--NVPTSIVDTSSDSDDRLCLRKEIRKAD   81 (625)
T ss_pred             ccCccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccCCccCcC--cCceEEEecccccchhHHHHHHHhhcC
Confidence            344568999999999999999999999999877655444332222222222  344679999876655555566789999


Q ss_pred             EEEEEEECCCHhHHHHHH-HHHHHHHHhC--CCCceEEEEEeCCCCccccccCHHH-HHHHHHHc-CC-eEEEEeCCCCC
Q 030364           85 AAVVVYDITSMDSFERAK-KWVQELQRQG--NPNLIMFLVANKVDLEEKRKVKNEE-GELYAQEN-GL-SFLETSAKSAH  158 (178)
Q Consensus        85 ~~i~v~d~~~~~s~~~~~-~~~~~~~~~~--~~~~~~ivv~nK~D~~~~~~~~~~~-~~~~~~~~-~~-~~~~~Sa~~~~  158 (178)
                      +++++|+.+++++++.+. .|+..+++..  ..+.|+|+|+||+|.........+. ...+...+ .+ .+++|||++-.
T Consensus        82 vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtciecSA~~~~  161 (625)
T KOG1707|consen   82 VICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETCIECSALTLA  161 (625)
T ss_pred             EEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHHHhhhhhhhh
Confidence            999999999999999986 5556666554  2689999999999986544332222 22222222 23 68999999999


Q ss_pred             CHHHHHHHHHhhcccc
Q 030364          159 NVNELFYEIGDCTECF  174 (178)
Q Consensus       159 ~i~~~~~~l~~~i~~~  174 (178)
                      ++.++|....+.+-++
T Consensus       162 n~~e~fYyaqKaVihP  177 (625)
T KOG1707|consen  162 NVSELFYYAQKAVIHP  177 (625)
T ss_pred             hhHhhhhhhhheeecc
Confidence            9999999887776654

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=99.76  E-value=4e-17  Score=123.85  Aligned_cols=154  Identities=16%  Similarity=0.189  Sum_probs=100.3

Q ss_pred             CCCceeEEEEEcCCCCCHHHHHHHHHhCc--CCC---------------------------CccCceeeeEEEEEEEeCC
Q 030364            6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQ--FFD---------------------------FQESTIGAAFFTQVLSLNE   56 (178)
Q Consensus         6 ~~~~~~~i~v~G~~~~GKStl~~~l~~~~--~~~---------------------------~~~~~~~~~~~~~~~~~~~   56 (178)
                      .+.+.++|+++|+.++|||||+.+|+...  ...                           ..+...+.+.......+..
T Consensus         3 ~~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~   82 (446)
T PTZ00141          3 KEKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFET   82 (446)
T ss_pred             CCCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEcc
Confidence            45678999999999999999999987621  100                           0111122333334444555


Q ss_pred             eEEEEEEEeCCCchhhhccchhhhcCCcEEEEEEECCCHhH---H---HHHHHHHHHHHHhCCCCce-EEEEEeCCCCcc
Q 030364           57 VTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDS---F---ERAKKWVQELQRQGNPNLI-MFLVANKVDLEE  129 (178)
Q Consensus        57 ~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~-~ivv~nK~D~~~  129 (178)
                      ....+.|+|+||+.+|.......+..+|++++|+|++++.-   +   ....+.+..+...   +.| +++++||+|...
T Consensus        83 ~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~---gi~~iiv~vNKmD~~~  159 (446)
T PTZ00141         83 PKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTL---GVKQMIVCINKMDDKT  159 (446)
T ss_pred             CCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHc---CCCeEEEEEEcccccc
Confidence            56788899999999998888888899999999999987531   1   2233333444433   444 678999999532


Q ss_pred             --ccc----cCHHHHHHHHHHc-----CCeEEEEeCCCCCCHHH
Q 030364          130 --KRK----VKNEEGELYAQEN-----GLSFLETSAKSAHNVNE  162 (178)
Q Consensus       130 --~~~----~~~~~~~~~~~~~-----~~~~~~~Sa~~~~~i~~  162 (178)
                        ..+    ....+...+....     +++++++|+.+|+|+.+
T Consensus       160 ~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~  203 (446)
T PTZ00141        160 VNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE  203 (446)
T ss_pred             chhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence              110    1112223333322     36899999999999864

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=99.75  E-value=5.9e-18  Score=121.13  Aligned_cols=150  Identities=19%  Similarity=0.150  Sum_probs=92.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCcCCCCcc----C-c-----------eeeeEEEEEEEeCCeEEEEEEEeCCCchhhhcc
Q 030364           12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQE----S-T-----------IGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSL   75 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~~~~~~~~~----~-~-----------~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~   75 (178)
                      +|+++|++|+|||||+++|+.........    . +           .+.+.......+....+.+.+||+||+..+...
T Consensus         1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~   80 (268)
T cd04170           1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE   80 (268)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence            58999999999999999997532110000    0 0           011111222223333467889999999888888


Q ss_pred             chhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEE--e
Q 030364           76 APMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLET--S  153 (178)
Q Consensus        76 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~--S  153 (178)
                      ...++..+|++++|+|+++....... ..+..+..   .+.|.++++||+|.....  .......+....+.+++.+  .
T Consensus        81 ~~~~l~~aD~~i~Vvd~~~g~~~~~~-~~~~~~~~---~~~p~iivvNK~D~~~~~--~~~~~~~l~~~~~~~~~~~~ip  154 (268)
T cd04170          81 TRAALRAADAALVVVSAQSGVEVGTE-KLWEFADE---AGIPRIIFINKMDRERAD--FDKTLAALQEAFGRPVVPLQLP  154 (268)
T ss_pred             HHHHHHHCCEEEEEEeCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECCccCCCC--HHHHHHHHHHHhCCCeEEEEec
Confidence            88889999999999999986544322 22333333   367899999999987542  1223334444455544443  3


Q ss_pred             CCCCCCHHHHHHHH
Q 030364          154 AKSAHNVNELFYEI  167 (178)
Q Consensus       154 a~~~~~i~~~~~~l  167 (178)
                      ..+|.++..+.+.+
T Consensus       155 ~~~~~~~~~~vd~~  168 (268)
T cd04170         155 IGEGDDFKGVVDLL  168 (268)
T ss_pred             ccCCCceeEEEEcc
Confidence            55555554444433

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=99.75  E-value=6.9e-17  Score=110.62  Aligned_cols=157  Identities=15%  Similarity=0.162  Sum_probs=93.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceee---eEEEEEEEeCCeEEEEEEEeCCCchhhhccc-----hhhhc
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGA---AFFTQVLSLNEVTIKFDIWDTAGQERYHSLA-----PMYYR   81 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~-----~~~~~   81 (178)
                      .+||+++|.+|+|||||+|.+.+...........+.   +.....+.... ...+.+||+||........     ...+.
T Consensus         1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~~l~~~~~~   79 (197)
T cd04104           1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPK-FPNVTLWDLPGIGSTAFPPDDYLEEMKFS   79 (197)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCC-CCCceEEeCCCCCcccCCHHHHHHHhCcc
Confidence            378999999999999999999986543322222221   11111111111 2367899999975332222     22256


Q ss_pred             CCcEEEEEEECCCHhHHHHH-HHHHHHHHHhCCCCceEEEEEeCCCCcccccc-------CHHH----HH-HHH---HHc
Q 030364           82 GAAAAVVVYDITSMDSFERA-KKWVQELQRQGNPNLIMFLVANKVDLEEKRKV-------KNEE----GE-LYA---QEN  145 (178)
Q Consensus        82 ~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~-------~~~~----~~-~~~---~~~  145 (178)
                      .+|+++++.+..    +... ..+++.+...   +.|+++|+||+|+..+.+.       ..++    .. ...   ...
T Consensus        80 ~~d~~l~v~~~~----~~~~d~~~~~~l~~~---~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~  152 (197)
T cd04104          80 EYDFFIIISSTR----FSSNDVKLAKAIQCM---GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEA  152 (197)
T ss_pred             CcCEEEEEeCCC----CCHHHHHHHHHHHHh---CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHc
Confidence            789988875422    2222 3444555443   5789999999998432110       0111    11 111   111


Q ss_pred             C---CeEEEEeCC--CCCCHHHHHHHHHhhcccc
Q 030364          146 G---LSFLETSAK--SAHNVNELFYEIGDCTECF  174 (178)
Q Consensus       146 ~---~~~~~~Sa~--~~~~i~~~~~~l~~~i~~~  174 (178)
                      +   -++|.+|+.  .+.++..+.+.|+..+...
T Consensus       153 ~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~  186 (197)
T cd04104         153 GVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAH  186 (197)
T ss_pred             CCCCCCEEEEeCCChhhcChHHHHHHHHHHhhHH
Confidence            2   378999998  5789999999999887643

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.74  E-value=1.2e-16  Score=119.88  Aligned_cols=160  Identities=18%  Similarity=0.189  Sum_probs=110.5

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCC-eEEEEEEEeCCCchhhhccchhhhcCCcEEE
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNE-VTIKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i   87 (178)
                      +..=|.++|+..-|||||+..+-.......-.-..+.......+..+. ..-.+.|+|||||+.|..++..-..-+|.+|
T Consensus         4 R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaI   83 (509)
T COG0532           4 RPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAI   83 (509)
T ss_pred             CCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEE
Confidence            345689999999999999999887666543333333333344444431 2346789999999999999998889999999


Q ss_pred             EEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHH------HHHcC--CeEEEEeCCCCCC
Q 030364           88 VVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELY------AQENG--LSFLETSAKSAHN  159 (178)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~------~~~~~--~~~~~~Sa~~~~~  159 (178)
                      +|++++|.--...    .+.+......+.|++|++||+|.++....  ....++      ...++  ..++++||++|+|
T Consensus        84 LVVa~dDGv~pQT----iEAI~hak~a~vP~iVAiNKiDk~~~np~--~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~G  157 (509)
T COG0532          84 LVVAADDGVMPQT----IEAINHAKAAGVPIVVAINKIDKPEANPD--KVKQELQEYGLVPEEWGGDVIFVPVSAKTGEG  157 (509)
T ss_pred             EEEEccCCcchhH----HHHHHHHHHCCCCEEEEEecccCCCCCHH--HHHHHHHHcCCCHhhcCCceEEEEeeccCCCC
Confidence            9999998421111    12233333458999999999999853321  111111      11222  4899999999999


Q ss_pred             HHHHHHHHHhhcccc
Q 030364          160 VNELFYEIGDCTECF  174 (178)
Q Consensus       160 i~~~~~~l~~~i~~~  174 (178)
                      +++++..|.-..+.+
T Consensus       158 i~eLL~~ill~aev~  172 (509)
T COG0532         158 IDELLELILLLAEVL  172 (509)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999887654433

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=99.74  E-value=3.3e-17  Score=123.30  Aligned_cols=149  Identities=21%  Similarity=0.207  Sum_probs=92.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCcCC-CC------------------------------ccCceeeeEEEEEEEeCCeEE
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVKGQFF-DF------------------------------QESTIGAAFFTQVLSLNEVTI   59 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~~~~~-~~------------------------------~~~~~~~~~~~~~~~~~~~~~   59 (178)
                      +||+++|+.++|||||+.+|+...-. ..                              .+...+.+.......+.....
T Consensus         1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~   80 (406)
T TIGR02034         1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR   80 (406)
T ss_pred             CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence            58999999999999999999743210 00                              000111122222233333446


Q ss_pred             EEEEEeCCCchhhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccC----H
Q 030364           60 KFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVK----N  135 (178)
Q Consensus        60 ~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~----~  135 (178)
                      ++.|+|+||++.|.......+..+|++++|+|+..+..- .....+..+....  ..++++++||+|+.+.....    .
T Consensus        81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~-qt~~~~~~~~~~~--~~~iivviNK~D~~~~~~~~~~~i~  157 (406)
T TIGR02034        81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLE-QTRRHSYIASLLG--IRHVVLAVNKMDLVDYDEEVFENIK  157 (406)
T ss_pred             EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCcc-ccHHHHHHHHHcC--CCcEEEEEEecccccchHHHHHHHH
Confidence            788999999998877666778999999999999864321 1122223333322  23588899999986422111    1


Q ss_pred             HHHHHHHHHcC---CeEEEEeCCCCCCHHH
Q 030364          136 EEGELYAQENG---LSFLETSAKSAHNVNE  162 (178)
Q Consensus       136 ~~~~~~~~~~~---~~~~~~Sa~~~~~i~~  162 (178)
                      ++...+.+..+   ++++++||++|.|+++
T Consensus       158 ~~~~~~~~~~~~~~~~iipiSA~~g~ni~~  187 (406)
T TIGR02034       158 KDYLAFAEQLGFRDVTFIPLSALKGDNVVS  187 (406)
T ss_pred             HHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence            12222333333   5799999999999885

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>cd01899 Ygr210 Ygr210 subfamily

Probab=99.74  E-value=1.3e-16  Score=115.82  Aligned_cols=156  Identities=15%  Similarity=0.150  Sum_probs=95.4

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCcCCCC------ccCceeeeEEEEE---------------EEeCC-eEEEEEEEeCCCc-
Q 030364           13 LVLLGDMGTGKTSLVLRFVKGQFFDF------QESTIGAAFFTQV---------------LSLNE-VTIKFDIWDTAGQ-   69 (178)
Q Consensus        13 i~v~G~~~~GKStl~~~l~~~~~~~~------~~~~~~~~~~~~~---------------~~~~~-~~~~~~i~d~~g~-   69 (178)
                      |+++|.|++|||||++++++......      ..|..+.......               ...++ ..+.+++||+||. 
T Consensus         1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv   80 (318)
T cd01899           1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV   80 (318)
T ss_pred             CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence            57999999999999999998764321      2233332221110               00122 3467999999997 


Q ss_pred             ---hhhhccchh---hhcCCcEEEEEEECCC---------------H-hHHHHHHHHHHH------------HH------
Q 030364           70 ---ERYHSLAPM---YYRGAAAAVVVYDITS---------------M-DSFERAKKWVQE------------LQ------  109 (178)
Q Consensus        70 ---~~~~~~~~~---~~~~~d~~i~v~d~~~---------------~-~s~~~~~~~~~~------------~~------  109 (178)
                         +.+..+...   .++.+|++++|+|++.               + +.++.+...+..            +.      
T Consensus        81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~~~d~~~~~~~~~~~dp~~d~~~i~~El~~~d~~~~~~~~~~~~~~~~~~  160 (318)
T cd01899          81 PGAHEGKGLGNKFLDDLRDADALIHVVDASGGTDAEGNGVETGGHDPLEDIEFLENEIDMWIYGILEKNWEKIVRKADAE  160 (318)
T ss_pred             CCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence               334443333   4899999999999973               1 112111110000            00      


Q ss_pred             --------------------------Hh----------------------CCCCceEEEEEeCCCCccccccCHHHHHHH
Q 030364          110 --------------------------RQ----------------------GNPNLIMFLVANKVDLEEKRKVKNEEGELY  141 (178)
Q Consensus       110 --------------------------~~----------------------~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~  141 (178)
                                                ..                      ....+|+++++||.|+....+..    ..+
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~llt~KPvI~VlNK~Dl~~~~~~~----~~l  236 (318)
T cd01899         161 KTDIVEALSEQLSGFGVNEKDVIEALEELELPEDLSKWTDEDLLRLARALRKRSKPMVIAANKADIPDAENNI----SKL  236 (318)
T ss_pred             CccHHHHHHHHHhhccccHHHHHHHHHhCCCCCcccCCCHHHHHHHHHHHHhcCCcEEEEEEHHHccChHHHH----HHH
Confidence                                      00                      02357999999999975432211    112


Q ss_pred             -HHHcCCeEEEEeCCCCCCHHHHHH-HHHhhcc
Q 030364          142 -AQENGLSFLETSAKSAHNVNELFY-EIGDCTE  172 (178)
Q Consensus       142 -~~~~~~~~~~~Sa~~~~~i~~~~~-~l~~~i~  172 (178)
                       ......+++.+||+.+.+++++.+ .+.+.+-
T Consensus       237 ~~~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lP  269 (318)
T cd01899         237 RLKYPDEIVVPTSAEAELALRRAAKQGLIKYDP  269 (318)
T ss_pred             HhhCCCCeEEEEeCcccccHHHHHHhhHHHhCC
Confidence             222356899999999999999998 5888774

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]

Probab=99.74  E-value=1.2e-16  Score=119.77  Aligned_cols=164  Identities=16%  Similarity=0.141  Sum_probs=119.2

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHHhCcC--CC-----------CccCceeeeEEEE---EEEeCCeEEEEEEEeCCCchh
Q 030364            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQF--FD-----------FQESTIGAAFFTQ---VLSLNEVTIKFDIWDTAGQER   71 (178)
Q Consensus         8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~--~~-----------~~~~~~~~~~~~~---~~~~~~~~~~~~i~d~~g~~~   71 (178)
                      ++..++.|+-+-.-|||||..+|+...-  ..           ..+...+.+....   .+..++..+.++++||||+-+
T Consensus        58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvD  137 (650)
T KOG0462|consen   58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVD  137 (650)
T ss_pred             hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccc
Confidence            4567999999999999999999876221  00           0112222222221   222346779999999999999


Q ss_pred             hhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCH-HHHHHHHHHcCCeEE
Q 030364           72 YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKN-EEGELYAQENGLSFL  150 (178)
Q Consensus        72 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~-~~~~~~~~~~~~~~~  150 (178)
                      |.......+..|+++++|+|++.+-.-..+..++..+.    .+..+|.|+||.|++.++.-.. .+..++......+++
T Consensus       138 Fs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe----~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~~~~i  213 (650)
T KOG0462|consen  138 FSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFE----AGLAIIPVLNKIDLPSADPERVENQLFELFDIPPAEVI  213 (650)
T ss_pred             ccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHH----cCCeEEEeeeccCCCCCCHHHHHHHHHHHhcCCccceE
Confidence            99999999999999999999998765555555555553    3667899999999987654222 223333333456899


Q ss_pred             EEeCCCCCCHHHHHHHHHhhccccc
Q 030364          151 ETSAKSAHNVNELFYEIGDCTECFS  175 (178)
Q Consensus       151 ~~Sa~~~~~i~~~~~~l~~~i~~~~  175 (178)
                      .+||++|.|+++++++|++.+-...
T Consensus       214 ~vSAK~G~~v~~lL~AII~rVPpP~  238 (650)
T KOG0462|consen  214 YVSAKTGLNVEELLEAIIRRVPPPK  238 (650)
T ss_pred             EEEeccCccHHHHHHHHHhhCCCCC
Confidence            9999999999999999999987553

>PRK13351 elongation factor G; Reviewed

Probab=99.73  E-value=8.5e-17  Score=128.46  Aligned_cols=119  Identities=19%  Similarity=0.169  Sum_probs=82.4

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHHhCcCC--------C-----Ccc---CceeeeEEEEEEEeCCeEEEEEEEeCCCch
Q 030364            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFF--------D-----FQE---STIGAAFFTQVLSLNEVTIKFDIWDTAGQE   70 (178)
Q Consensus         7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~~~--------~-----~~~---~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~   70 (178)
                      .+...+|+|+|+.++|||||+++|+...-.        .     .+.   ...+.+.......+....+.+.+|||||+.
T Consensus         5 ~~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~   84 (687)
T PRK13351          5 LMQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHI   84 (687)
T ss_pred             cccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcH
Confidence            345789999999999999999999853210        0     000   001112222222233345788999999999


Q ss_pred             hhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcc
Q 030364           71 RYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEE  129 (178)
Q Consensus        71 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~  129 (178)
                      ++...+..+++.+|++++|+|+++.........| ..+..   .+.|+++++||+|+..
T Consensus        85 df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~-~~~~~---~~~p~iiviNK~D~~~  139 (687)
T PRK13351         85 DFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVW-RQADR---YGIPRLIFINKMDRVG  139 (687)
T ss_pred             HHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHh---cCCCEEEEEECCCCCC
Confidence            9988889999999999999999987655543333 33333   3689999999999753

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=99.73  E-value=4.8e-16  Score=110.01  Aligned_cols=157  Identities=18%  Similarity=0.147  Sum_probs=110.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhh-------ccchhhhcC
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYH-------SLAPMYYRG   82 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~-------~~~~~~~~~   82 (178)
                      .-+++++|.|++|||||+++|++.+......+.++.+..+-.+.+++  .++++.|+||.-.-.       ...-...++
T Consensus        63 da~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~g--a~IQild~Pgii~gas~g~grG~~vlsv~R~  140 (365)
T COG1163          63 DATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKG--AQIQLLDLPGIIEGASSGRGRGRQVLSVARN  140 (365)
T ss_pred             CeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecC--ceEEEEcCcccccCcccCCCCcceeeeeecc
Confidence            45899999999999999999998766544455555566667777777  567799999852211       223456789


Q ss_pred             CcEEEEEEECCCHhH-HHHHHHHHHHH-----------------------------------------HHh---------
Q 030364           83 AAAAVVVYDITSMDS-FERAKKWVQEL-----------------------------------------QRQ---------  111 (178)
Q Consensus        83 ~d~~i~v~d~~~~~s-~~~~~~~~~~~-----------------------------------------~~~---------  111 (178)
                      ||++++|+|+....+ .+.+.+.+...                                         ..+         
T Consensus       141 ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~I  220 (365)
T COG1163         141 ADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLI  220 (365)
T ss_pred             CCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEEE
Confidence            999999999996544 44443321110                                         000         


Q ss_pred             ---------------CCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHhhccccc
Q 030364          112 ---------------GNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIGDCTECFS  175 (178)
Q Consensus       112 ---------------~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~~~~  175 (178)
                                     ....+|.++|.||.|+..     .++...+.+..  .++.+||..+.|++++.+.|-+.+.-.|
T Consensus       221 r~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~-----~e~~~~l~~~~--~~v~isa~~~~nld~L~e~i~~~L~liR  292 (365)
T COG1163         221 REDVTLDDLIDALEGNRVYKPALYVVNKIDLPG-----LEELERLARKP--NSVPISAKKGINLDELKERIWDVLGLIR  292 (365)
T ss_pred             ecCCcHHHHHHHHhhcceeeeeEEEEecccccC-----HHHHHHHHhcc--ceEEEecccCCCHHHHHHHHHHhhCeEE
Confidence                           012578899999999865     23333333333  8999999999999999999998876554

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=99.73  E-value=1.6e-16  Score=120.46  Aligned_cols=166  Identities=12%  Similarity=0.131  Sum_probs=105.4

Q ss_pred             CCCceeEEEEEcCCCCCHHHHHHHHHhCcCCC---CccCcee--eeEEEE-------------EEEeCC-----------
Q 030364            6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFD---FQESTIG--AAFFTQ-------------VLSLNE-----------   56 (178)
Q Consensus         6 ~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~---~~~~~~~--~~~~~~-------------~~~~~~-----------   56 (178)
                      ..++.++|.++|+...|||||+.+|++-....   +.....+  ..+...             ....+.           
T Consensus        30 ~~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (460)
T PTZ00327         30 SRQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGC  109 (460)
T ss_pred             cCCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccc
Confidence            34678999999999999999999999643211   1111000  000000             000000           


Q ss_pred             -----eEEEEEEEeCCCchhhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccc
Q 030364           57 -----VTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR  131 (178)
Q Consensus        57 -----~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~  131 (178)
                           ....+.|+|+||++.|.......+..+|++++|+|+.++.......+.+..+....  -.|+++++||+|+.+..
T Consensus       110 ~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lg--i~~iIVvlNKiDlv~~~  187 (460)
T PTZ00327        110 GHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMK--LKHIIILQNKIDLVKEA  187 (460)
T ss_pred             cccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcC--CCcEEEEEecccccCHH
Confidence                 02367899999999998877777889999999999997421222223333333222  24688999999986432


Q ss_pred             ccC--HHHHHHHHHH---cCCeEEEEeCCCCCCHHHHHHHHHhhccc
Q 030364          132 KVK--NEEGELYAQE---NGLSFLETSAKSAHNVNELFYEIGDCTEC  173 (178)
Q Consensus       132 ~~~--~~~~~~~~~~---~~~~~~~~Sa~~~~~i~~~~~~l~~~i~~  173 (178)
                      ...  .++...+...   .+.+++++||++|.|++++++.|.+.+..
T Consensus       188 ~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~  234 (460)
T PTZ00327        188 QAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIPI  234 (460)
T ss_pred             HHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCCC
Confidence            221  1122222222   35799999999999999999999976654

>TIGR00503 prfC peptide chain release factor 3

Probab=99.73  E-value=3.2e-16  Score=120.89  Aligned_cols=118  Identities=16%  Similarity=0.198  Sum_probs=82.0

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHHhC-cCCCC-------------------ccCceeeeEEEEEEEeCCeEEEEEEEeC
Q 030364            7 KNIQVKLVLLGDMGTGKTSLVLRFVKG-QFFDF-------------------QESTIGAAFFTQVLSLNEVTIKFDIWDT   66 (178)
Q Consensus         7 ~~~~~~i~v~G~~~~GKStl~~~l~~~-~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~i~d~   66 (178)
                      .....+|+++|++++|||||+++|+.. .....                   .+...+.+.......++...+.+.+|||
T Consensus         8 ~~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDT   87 (527)
T TIGR00503         8 VDKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDT   87 (527)
T ss_pred             hccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEEC
Confidence            355789999999999999999998631 11100                   0111233344444555555688899999


Q ss_pred             CCchhhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCc
Q 030364           67 AGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLE  128 (178)
Q Consensus        67 ~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~  128 (178)
                      ||+..|.......+..+|++|+|+|+++.- ......+++....   .+.|+++++||+|+.
T Consensus        88 PG~~df~~~~~~~l~~aD~aIlVvDa~~gv-~~~t~~l~~~~~~---~~~PiivviNKiD~~  145 (527)
T TIGR00503        88 PGHEDFSEDTYRTLTAVDNCLMVIDAAKGV-ETRTRKLMEVTRL---RDTPIFTFMNKLDRD  145 (527)
T ss_pred             CChhhHHHHHHHHHHhCCEEEEEEECCCCC-CHHHHHHHHHHHh---cCCCEEEEEECcccc
Confidence            999888877777889999999999998742 1223334433332   468999999999974

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=99.72  E-value=1e-16  Score=114.11  Aligned_cols=162  Identities=19%  Similarity=0.126  Sum_probs=108.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCcCC-CCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhc-------cchhhhcCC
Q 030364           12 KLVLLGDMGTGKTSLVLRFVKGQFF-DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHS-------LAPMYYRGA   83 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~-------~~~~~~~~~   83 (178)
                      -|.++|.|++|||||++++...+.. ..|..|+ ....--.+.. ...-.|.+-|.||.-+-.+       ..-..++.+
T Consensus       161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpFTT-L~PnLGvV~~-~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt  238 (369)
T COG0536         161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTT-LVPNLGVVRV-DGGESFVVADIPGLIEGASEGVGLGLRFLRHIERT  238 (369)
T ss_pred             ccccccCCCCcHHHHHHHHhhcCCcccCCcccc-ccCcccEEEe-cCCCcEEEecCcccccccccCCCccHHHHHHHHhh
Confidence            4678999999999999999986543 3333332 2222223333 2234577999999522111       122335678


Q ss_pred             cEEEEEEECCCHh---HHHHHHHHHHHHHHhC--CCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEE-EeCCCC
Q 030364           84 AAAVVVYDITSMD---SFERAKKWVQELQRQG--NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLE-TSAKSA  157 (178)
Q Consensus        84 d~~i~v~d~~~~~---s~~~~~~~~~~~~~~~--~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~-~Sa~~~  157 (178)
                      .++++|+|++..+   ..+.......++..+.  ..++|.+||+||+|+....+........+.+..++..+. +|+.++
T Consensus       239 ~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~ISa~t~  318 (369)
T COG0536         239 RVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLISALTR  318 (369)
T ss_pred             heeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCcceeeehhcc
Confidence            8999999999543   4666666667776653  468999999999997655444444445555555543322 999999


Q ss_pred             CCHHHHHHHHHhhccccc
Q 030364          158 HNVNELFYEIGDCTECFS  175 (178)
Q Consensus       158 ~~i~~~~~~l~~~i~~~~  175 (178)
                      .|++++...+.+.+.+.+
T Consensus       319 ~g~~~L~~~~~~~l~~~~  336 (369)
T COG0536         319 EGLDELLRALAELLEETK  336 (369)
T ss_pred             cCHHHHHHHHHHHHHHhh
Confidence            999999999998887654

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.72  E-value=1.2e-16  Score=116.45  Aligned_cols=158  Identities=20%  Similarity=0.201  Sum_probs=104.4

Q ss_pred             CCCceeEEEEEcCCCCCHHHHHHHHHhCc--CC---------------------------CCccCceeeeEEEEEEEeCC
Q 030364            6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQ--FF---------------------------DFQESTIGAAFFTQVLSLNE   56 (178)
Q Consensus         6 ~~~~~~~i~v~G~~~~GKStl~~~l~~~~--~~---------------------------~~~~~~~~~~~~~~~~~~~~   56 (178)
                      ..+++++++++|+..+|||||+-+|+...  +.                           ...+...+.+.......+.-
T Consensus         3 ~~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet   82 (428)
T COG5256           3 SEKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFET   82 (428)
T ss_pred             CCCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeec
Confidence            45679999999999999999999887621  00                           00122234444455555555


Q ss_pred             eEEEEEEEeCCCchhhhccchhhhcCCcEEEEEEECCCHhH---HHH--HHHHHHHHHHhCCCCceEEEEEeCCCCcccc
Q 030364           57 VTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDS---FER--AKKWVQELQRQGNPNLIMFLVANKVDLEEKR  131 (178)
Q Consensus        57 ~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~~--~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~  131 (178)
                      ..+.+.++|+||+..|......-+..+|+.|+|+|+++.+.   |..  ..+..-.+.+. .--..++|++||+|..+-+
T Consensus        83 ~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~t-lGi~~lIVavNKMD~v~wd  161 (428)
T COG5256          83 DKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLART-LGIKQLIVAVNKMDLVSWD  161 (428)
T ss_pred             CCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHh-cCCceEEEEEEcccccccC
Confidence            56788999999999998888888899999999999998642   111  11222222222 2234478899999987632


Q ss_pred             ccCHH----HHHHHHHHcC-----CeEEEEeCCCCCCHHHHH
Q 030364          132 KVKNE----EGELYAQENG-----LSFLETSAKSAHNVNELF  164 (178)
Q Consensus       132 ~~~~~----~~~~~~~~~~-----~~~~~~Sa~~~~~i~~~~  164 (178)
                      +-..+    +...+.+..+     ++|+++|+..|.|+.+.-
T Consensus       162 e~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~s  203 (428)
T COG5256         162 EERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKKS  203 (428)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccccC
Confidence            21111    2233444433     579999999999987643

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=99.72  E-value=1.4e-16  Score=126.02  Aligned_cols=153  Identities=19%  Similarity=0.184  Sum_probs=94.4

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHHhCcCC-C-C-----------cc------------------CceeeeEEEEEEEeC
Q 030364            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFF-D-F-----------QE------------------STIGAAFFTQVLSLN   55 (178)
Q Consensus         7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~~~-~-~-----------~~------------------~~~~~~~~~~~~~~~   55 (178)
                      ..+.++|+++|++++|||||+++|+...-. . .           ..                  ...+.+.......+.
T Consensus        21 ~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~  100 (632)
T PRK05506         21 RKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFA  100 (632)
T ss_pred             CCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEc
Confidence            445789999999999999999999863211 0 0           00                  001111122222233


Q ss_pred             CeEEEEEEEeCCCchhhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccc-cC
Q 030364           56 EVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRK-VK  134 (178)
Q Consensus        56 ~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~-~~  134 (178)
                      ....++.|+|+||++.|.......+..+|++++|+|+..+..- .....+..+...  ...|++|++||+|+.+..+ ..
T Consensus       101 ~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~-~t~e~~~~~~~~--~~~~iivvvNK~D~~~~~~~~~  177 (632)
T PRK05506        101 TPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLT-QTRRHSFIASLL--GIRHVVLAVNKMDLVDYDQEVF  177 (632)
T ss_pred             cCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccc-cCHHHHHHHHHh--CCCeEEEEEEecccccchhHHH
Confidence            3345677999999988876666678899999999999864321 112222223222  2356889999999864211 11


Q ss_pred             H---HHHHHHHHHcC---CeEEEEeCCCCCCHHH
Q 030364          135 N---EEGELYAQENG---LSFLETSAKSAHNVNE  162 (178)
Q Consensus       135 ~---~~~~~~~~~~~---~~~~~~Sa~~~~~i~~  162 (178)
                      .   .+...+....+   ++++++||++|.|+++
T Consensus       178 ~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~  211 (632)
T PRK05506        178 DEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT  211 (632)
T ss_pred             HHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence            1   12222333444   4699999999999874

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=99.72  E-value=1.5e-17  Score=110.66  Aligned_cols=118  Identities=21%  Similarity=0.315  Sum_probs=71.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEe-CCeEEEEEEEeCCCchhhhccchh---hhcCCcE
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSL-NEVTIKFDIWDTAGQERYHSLAPM---YYRGAAA   85 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~d~~g~~~~~~~~~~---~~~~~d~   85 (178)
                      .-.|+++|+.|+|||+|+..|..+...+...+... ..   .... ......+.++|+||+.+.+.....   +...+.+
T Consensus         3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~e~-n~---~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~   78 (181)
T PF09439_consen    3 RPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSMEN-NI---AYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKG   78 (181)
T ss_dssp             --EEEEE-STTSSHHHHHHHHHHSS---B---SSE-EE---ECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEE
T ss_pred             CceEEEEcCCCCCHHHHHHHHhcCCcCCeeccccC-Cc---eEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCE
Confidence            45799999999999999999999976554444421 11   1112 222345679999999887764433   4778999


Q ss_pred             EEEEEECCC-HhHHHHHHHHH-HHHHHh--CCCCceEEEEEeCCCCcccc
Q 030364           86 AVVVYDITS-MDSFERAKKWV-QELQRQ--GNPNLIMFLVANKVDLEEKR  131 (178)
Q Consensus        86 ~i~v~d~~~-~~s~~~~~~~~-~~~~~~--~~~~~~~ivv~nK~D~~~~~  131 (178)
                      +|||+|.+. ......+.+++ ..+...  .....|++|++||+|+..+.
T Consensus        79 IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~  128 (181)
T PF09439_consen   79 IIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAK  128 (181)
T ss_dssp             EEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT--
T ss_pred             EEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccC
Confidence            999999984 33444444443 333332  24678999999999986543

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>COG3596 Predicted GTPase [General function prediction only]

Probab=99.72  E-value=8.3e-17  Score=111.65  Aligned_cols=162  Identities=15%  Similarity=0.230  Sum_probs=106.6

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEE-EeCCeEEEEEEEeCCCchh-------hhccchh
Q 030364            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVL-SLNEVTIKFDIWDTAGQER-------YHSLAPM   78 (178)
Q Consensus         7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~d~~g~~~-------~~~~~~~   78 (178)
                      ....++|+++|.+|+||||++|+|+.+...+...-..+.+...... .+++  -.+.+||+||.++       ++.....
T Consensus        36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~--~~l~lwDtPG~gdg~~~D~~~r~~~~d  113 (296)
T COG3596          36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDG--ENLVLWDTPGLGDGKDKDAEHRQLYRD  113 (296)
T ss_pred             ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccc--cceEEecCCCcccchhhhHHHHHHHHH
Confidence            3468999999999999999999999766544322222222222222 3344  3567999999644       6666778


Q ss_pred             hhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccc-------ccCHHHHHHHH--------H
Q 030364           79 YYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR-------KVKNEEGELYA--------Q  143 (178)
Q Consensus        79 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~-------~~~~~~~~~~~--------~  143 (178)
                      ++...|.++++.++.|+.---. ..+++.+.... -+.++++++|.+|...+-       ........++.        +
T Consensus       114 ~l~~~DLvL~l~~~~draL~~d-~~f~~dVi~~~-~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~  191 (296)
T COG3596         114 YLPKLDLVLWLIKADDRALGTD-EDFLRDVIILG-LDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGR  191 (296)
T ss_pred             HhhhccEEEEeccCCCccccCC-HHHHHHHHHhc-cCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHH
Confidence            8899999999999998763222 23334443332 247899999999975431       11111111111        1


Q ss_pred             Hc--CCeEEEEeCCCCCCHHHHHHHHHhhcc
Q 030364          144 EN--GLSFLETSAKSAHNVNELFYEIGDCTE  172 (178)
Q Consensus       144 ~~--~~~~~~~Sa~~~~~i~~~~~~l~~~i~  172 (178)
                      ..  --|++..+...+.|++++...+++.+.
T Consensus       192 ~~q~V~pV~~~~~r~~wgl~~l~~ali~~lp  222 (296)
T COG3596         192 LFQEVKPVVAVSGRLPWGLKELVRALITALP  222 (296)
T ss_pred             HHhhcCCeEEeccccCccHHHHHHHHHHhCc
Confidence            11  137888889999999999999998765

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=99.71  E-value=6.5e-16  Score=97.11  Aligned_cols=106  Identities=17%  Similarity=0.139  Sum_probs=68.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCcCC-CCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhh---------hccchhhhc
Q 030364           12 KLVLLGDMGTGKTSLVLRFVKGQFF-DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERY---------HSLAPMYYR   81 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~---------~~~~~~~~~   81 (178)
                      +|+++|.+|+|||||+|+|++.... ....+..+.......+.+++..+  .++|+||...-         .......+.
T Consensus         1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~--~~vDtpG~~~~~~~~~~~~~~~~~~~~~~   78 (116)
T PF01926_consen    1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKF--ILVDTPGINDGESQDNDGKEIRKFLEQIS   78 (116)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEE--EEEESSSCSSSSHHHHHHHHHHHHHHHHC
T ss_pred             CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeE--EEEeCCCCcccchhhHHHHHHHHHHHHHH
Confidence            6899999999999999999975431 11222222222334455666544  59999995321         111233348


Q ss_pred             CCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeC
Q 030364           82 GAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANK  124 (178)
Q Consensus        82 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK  124 (178)
                      .+|++++|+|++++.. +....+++.+.    .+.|+++|+||
T Consensus        79 ~~d~ii~vv~~~~~~~-~~~~~~~~~l~----~~~~~i~v~NK  116 (116)
T PF01926_consen   79 KSDLIIYVVDASNPIT-EDDKNILRELK----NKKPIILVLNK  116 (116)
T ss_dssp             TESEEEEEEETTSHSH-HHHHHHHHHHH----TTSEEEEEEES
T ss_pred             HCCEEEEEEECCCCCC-HHHHHHHHHHh----cCCCEEEEEcC
Confidence            8999999999887422 22333444442    57899999998

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=99.70  E-value=7.3e-16  Score=113.98  Aligned_cols=162  Identities=17%  Similarity=0.124  Sum_probs=118.6

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHHhCcC---------------CCCccCceeeeEEEEEEEe---CCeEEEEEEEeCCCc
Q 030364            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQF---------------FDFQESTIGAAFFTQVLSL---NEVTIKFDIWDTAGQ   69 (178)
Q Consensus         8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~---------------~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~d~~g~   69 (178)
                      ....+..++-+-.-|||||..+++...-               .-+.+...+...+...+.+   ++..|.++++||||+
T Consensus         7 ~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGH   86 (603)
T COG0481           7 KNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGH   86 (603)
T ss_pred             hhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCc
Confidence            3466889999999999999999986311               1111222222223333333   557899999999999


Q ss_pred             hhhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCC--
Q 030364           70 ERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGL--  147 (178)
Q Consensus        70 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~--  147 (178)
                      -+|.......+..|.+.++++|++.+-.-..+...+..+.    .+.-++-|+||.|++.+...  .-..+..+-.|+  
T Consensus        87 VDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle----~~LeIiPViNKIDLP~Adpe--rvk~eIe~~iGid~  160 (603)
T COG0481          87 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE----NNLEIIPVLNKIDLPAADPE--RVKQEIEDIIGIDA  160 (603)
T ss_pred             cceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHH----cCcEEEEeeecccCCCCCHH--HHHHHHHHHhCCCc
Confidence            9999998999999999999999998665555655555554    35668889999999875542  223334444555  


Q ss_pred             -eEEEEeCCCCCCHHHHHHHHHhhccccc
Q 030364          148 -SFLETSAKSAHNVNELFYEIGDCTECFS  175 (178)
Q Consensus       148 -~~~~~Sa~~~~~i~~~~~~l~~~i~~~~  175 (178)
                       ..+.+||++|.|+++++++|++++-..+
T Consensus       161 ~dav~~SAKtG~gI~~iLe~Iv~~iP~P~  189 (603)
T COG0481         161 SDAVLVSAKTGIGIEDVLEAIVEKIPPPK  189 (603)
T ss_pred             chheeEecccCCCHHHHHHHHHhhCCCCC
Confidence             5799999999999999999999987654

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=99.70  E-value=8.2e-16  Score=105.28  Aligned_cols=159  Identities=16%  Similarity=0.175  Sum_probs=95.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCcCCCCcc--CceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhc--------c---ch
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQE--STIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHS--------L---AP   77 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~--------~---~~   77 (178)
                      ++|+++|.+|+|||||+|++++.+......  +..+..........++  ..+.++||||......        .   ..
T Consensus         1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~viDTPG~~d~~~~~~~~~~~i~~~~~   78 (196)
T cd01852           1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDG--RRVNVIDTPGLFDTSVSPEQLSKEIVRCLS   78 (196)
T ss_pred             CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECC--eEEEEEECcCCCCccCChHHHHHHHHHHHH
Confidence            489999999999999999999876543221  1122222222333444  4678999999643321        1   11


Q ss_pred             hhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCC--CCceEEEEEeCCCCccccccC------HHHHHHHHHHcCCeE
Q 030364           78 MYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGN--PNLIMFLVANKVDLEEKRKVK------NEEGELYAQENGLSF  149 (178)
Q Consensus        78 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~~ivv~nK~D~~~~~~~~------~~~~~~~~~~~~~~~  149 (178)
                      ....++|++++|+++.+ .+-+ -...++.+.....  .-.+++++.|+.|......+.      ....+.+.+..+-.+
T Consensus        79 ~~~~g~~~illVi~~~~-~t~~-d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~  156 (196)
T cd01852          79 LSAPGPHAFLLVVPLGR-FTEE-EEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRY  156 (196)
T ss_pred             hcCCCCEEEEEEEECCC-cCHH-HHHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeE
Confidence            22467899999999886 2211 1223334433322  124688999999965432211      123344445555566


Q ss_pred             EEEe-----CCCCCCHHHHHHHHHhhccc
Q 030364          150 LETS-----AKSAHNVNELFYEIGDCTEC  173 (178)
Q Consensus       150 ~~~S-----a~~~~~i~~~~~~l~~~i~~  173 (178)
                      +..+     +..+.+++++++.|.+.+..
T Consensus       157 ~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~  185 (196)
T cd01852         157 VAFNNKAKGEEQEQQVKELLAKVESMVKE  185 (196)
T ss_pred             EEEeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence            5555     45678899999988887764

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>PRK12739 elongation factor G; Reviewed

Probab=99.69  E-value=1.8e-15  Score=120.75  Aligned_cols=117  Identities=17%  Similarity=0.106  Sum_probs=80.3

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHHhCcCC--C----------------CccCceeeeEEEEEEEeCCeEEEEEEEeCCC
Q 030364            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFF--D----------------FQESTIGAAFFTQVLSLNEVTIKFDIWDTAG   68 (178)
Q Consensus         7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~~~--~----------------~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g   68 (178)
                      .....+|+++|++++|||||+++|+...-.  .                +..+..+.+.....+.++  ..++.++||||
T Consensus         5 ~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~--~~~i~liDTPG   82 (691)
T PRK12739          5 LEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWK--GHRINIIDTPG   82 (691)
T ss_pred             ccCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEEC--CEEEEEEcCCC
Confidence            445789999999999999999999752110  0                011112222223333333  46788999999


Q ss_pred             chhhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcc
Q 030364           69 QERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEE  129 (178)
Q Consensus        69 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~  129 (178)
                      +..+...+...+..+|++++|+|+.++..... ...+..+..   .+.|.++++||+|+..
T Consensus        83 ~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt-~~i~~~~~~---~~~p~iv~iNK~D~~~  139 (691)
T PRK12739         83 HVDFTIEVERSLRVLDGAVAVFDAVSGVEPQS-ETVWRQADK---YGVPRIVFVNKMDRIG  139 (691)
T ss_pred             HHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHH-HHHHHHHHH---cCCCEEEEEECCCCCC
Confidence            98888888888999999999999987532222 233333333   3678999999999863

>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.69  E-value=1.9e-15  Score=113.39  Aligned_cols=157  Identities=15%  Similarity=0.144  Sum_probs=110.1

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEE
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVV   88 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~   88 (178)
                      +..-|-++|+..-|||||+..|-+........-..+...-...+..+. .-.++|.||||+..|..++..-..-+|++++
T Consensus       152 RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~-G~~iTFLDTPGHaAF~aMRaRGA~vtDIvVL  230 (683)
T KOG1145|consen  152 RPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPS-GKSITFLDTPGHAAFSAMRARGANVTDIVVL  230 (683)
T ss_pred             CCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCC-CCEEEEecCCcHHHHHHHHhccCccccEEEE
Confidence            455788999999999999999987766443333333333333344442 2567799999999999999999999999999


Q ss_pred             EEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHH------HHcC--CeEEEEeCCCCCCH
Q 030364           89 VYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYA------QENG--LSFLETSAKSAHNV  160 (178)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~------~~~~--~~~~~~Sa~~~~~i  160 (178)
                      |+.+.|.---..    .+.+......+.|++|++||+|.+++...  ....++.      ..+|  .+++++||++|+|+
T Consensus       231 VVAadDGVmpQT----~EaIkhAk~A~VpiVvAinKiDkp~a~pe--kv~~eL~~~gi~~E~~GGdVQvipiSAl~g~nl  304 (683)
T KOG1145|consen  231 VVAADDGVMPQT----LEAIKHAKSANVPIVVAINKIDKPGANPE--KVKRELLSQGIVVEDLGGDVQVIPISALTGENL  304 (683)
T ss_pred             EEEccCCccHhH----HHHHHHHHhcCCCEEEEEeccCCCCCCHH--HHHHHHHHcCccHHHcCCceeEEEeecccCCCh
Confidence            999998431111    12333333468999999999998764431  1122221      1222  58999999999999


Q ss_pred             HHHHHHHHhhcc
Q 030364          161 NELFYEIGDCTE  172 (178)
Q Consensus       161 ~~~~~~l~~~i~  172 (178)
                      +.+-+++.-..+
T Consensus       305 ~~L~eaill~Ae  316 (683)
T KOG1145|consen  305 DLLEEAILLLAE  316 (683)
T ss_pred             HHHHHHHHHHHH
Confidence            999998876544

>TIGR00484 EF-G translation elongation factor EF-G

Probab=99.67  E-value=1.7e-15  Score=120.88  Aligned_cols=121  Identities=16%  Similarity=0.060  Sum_probs=82.3

Q ss_pred             CCCceeEEEEEcCCCCCHHHHHHHHHhCcCCC----Ccc------------CceeeeEEEEEEEeCCeEEEEEEEeCCCc
Q 030364            6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFD----FQE------------STIGAAFFTQVLSLNEVTIKFDIWDTAGQ   69 (178)
Q Consensus         6 ~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~----~~~------------~~~~~~~~~~~~~~~~~~~~~~i~d~~g~   69 (178)
                      ......+|+|+|++++|||||+++|....-..    ...            ...+.+.......+....+++.+|||||+
T Consensus         6 ~~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~   85 (689)
T TIGR00484         6 DLNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGH   85 (689)
T ss_pred             ccccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCC
Confidence            34457799999999999999999997522110    000            01222222223333333467889999999


Q ss_pred             hhhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccc
Q 030364           70 ERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEK  130 (178)
Q Consensus        70 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~  130 (178)
                      .++......+++.+|++++|+|+.+...... ..++..+..   .+.|+++++||+|+...
T Consensus        86 ~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~-~~~~~~~~~---~~~p~ivviNK~D~~~~  142 (689)
T TIGR00484        86 VDFTVEVERSLRVLDGAVAVLDAVGGVQPQS-ETVWRQANR---YEVPRIAFVNKMDKTGA  142 (689)
T ss_pred             cchhHHHHHHHHHhCEEEEEEeCCCCCChhH-HHHHHHHHH---cCCCEEEEEECCCCCCC
Confidence            8888888888999999999999997544332 233333333   36889999999998753

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]

Probab=99.67  E-value=2.5e-16  Score=116.77  Aligned_cols=166  Identities=16%  Similarity=0.112  Sum_probs=105.5

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchh-hhc--------cchh
Q 030364            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER-YHS--------LAPM   78 (178)
Q Consensus         8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~-~~~--------~~~~   78 (178)
                      +..++|+++|.||+|||||+|.|.+....- ..|..|++.......++-..+.+.+.||.|..+ ...        ....
T Consensus       266 q~gl~iaIvGrPNvGKSSLlNaL~~~drsI-VSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k  344 (531)
T KOG1191|consen  266 QSGLQIAIVGRPNVGKSSLLNALSREDRSI-VSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARK  344 (531)
T ss_pred             hcCCeEEEEcCCCCCHHHHHHHHhcCCceE-eCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHH
Confidence            346899999999999999999999765432 455556555555544444446777999999755 111        1234


Q ss_pred             hhcCCcEEEEEEECCC--HhHHHHHHHHHHHHHHhC------CCCceEEEEEeCCCCccc-cccCHHHHHHHHH-Hc-CC
Q 030364           79 YYRGAAAAVVVYDITS--MDSFERAKKWVQELQRQG------NPNLIMFLVANKVDLEEK-RKVKNEEGELYAQ-EN-GL  147 (178)
Q Consensus        79 ~~~~~d~~i~v~d~~~--~~s~~~~~~~~~~~~~~~------~~~~~~ivv~nK~D~~~~-~~~~~~~~~~~~~-~~-~~  147 (178)
                      .+..+|++++|+|+..  -++...+.+.+.......      ....|++++.||.|+... .+....-...... .. ..
T Consensus       345 ~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~~~~~~~  424 (531)
T KOG1191|consen  345 RIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSAEGRSVF  424 (531)
T ss_pred             HHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceeccccccCccc
Confidence            5778999999999943  232222233333332211      235789999999998654 2222111111111 11 23


Q ss_pred             e-EEEEeCCCCCCHHHHHHHHHhhcccc
Q 030364          148 S-FLETSAKSAHNVNELFYEIGDCTECF  174 (178)
Q Consensus       148 ~-~~~~Sa~~~~~i~~~~~~l~~~i~~~  174 (178)
                      + ..++|+++++|++.+.+.|.......
T Consensus       425 ~i~~~vs~~tkeg~~~L~~all~~~~~~  452 (531)
T KOG1191|consen  425 PIVVEVSCTTKEGCERLSTALLNIVERL  452 (531)
T ss_pred             ceEEEeeechhhhHHHHHHHHHHHHHHh
Confidence            4 45599999999999999998876643

>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.67  E-value=1.2e-15  Score=101.92  Aligned_cols=157  Identities=22%  Similarity=0.249  Sum_probs=102.7

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhc---CCcE
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYR---GAAA   85 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~---~~d~   85 (178)
                      ..-.|+++|+.+||||+|+..|..+.+...+.+.   ........++...  ++++|.||+.+.+.....+++   .+-+
T Consensus        37 ~~~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSi---epn~a~~r~gs~~--~~LVD~PGH~rlR~kl~e~~~~~~~aka  111 (238)
T KOG0090|consen   37 KQNAVLLVGLSDSGKTSLFTQLITGSHRGTVTSI---EPNEATYRLGSEN--VTLVDLPGHSRLRRKLLEYLKHNYSAKA  111 (238)
T ss_pred             cCCcEEEEecCCCCceeeeeehhcCCccCeeeee---ccceeeEeecCcc--eEEEeCCCcHHHHHHHHHHcccccccee
Confidence            3467999999999999999999988654432222   2223333334433  679999999988887777777   7899


Q ss_pred             EEEEEECCC--HhHHHHHHHHHHHHHHh--CCCCceEEEEEeCCCCcccccc------------------------CHH-
Q 030364           86 AVVVYDITS--MDSFERAKKWVQELQRQ--GNPNLIMFLVANKVDLEEKRKV------------------------KNE-  136 (178)
Q Consensus        86 ~i~v~d~~~--~~s~~~~~~~~~~~~~~--~~~~~~~ivv~nK~D~~~~~~~------------------------~~~-  136 (178)
                      +|||+|...  ++.-+-...++..+...  .....|+++++||.|+.-+...                        ..+ 
T Consensus       112 iVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed  191 (238)
T KOG0090|consen  112 IVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDED  191 (238)
T ss_pred             EEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhcccccc
Confidence            999999874  23222233334444443  2567889999999998532110                        000 


Q ss_pred             ---------HH--HHHHHH--cCCeEEEEeCCCCCCHHHHHHHHHhhc
Q 030364          137 ---------EG--ELYAQE--NGLSFLETSAKSAHNVNELFYEIGDCT  171 (178)
Q Consensus       137 ---------~~--~~~~~~--~~~~~~~~Sa~~~~~i~~~~~~l~~~i  171 (178)
                               ++  ..|++.  ..+.+.++|++++ +++++-+||.+.+
T Consensus       192 ~~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~l  238 (238)
T KOG0090|consen  192 IAKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREAL  238 (238)
T ss_pred             ccccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHhC
Confidence                     00  111111  2357899999998 9999999998753

>PRK09866 hypothetical protein; Provisional

Probab=99.66  E-value=8.2e-15  Score=112.94  Aligned_cols=110  Identities=14%  Similarity=0.188  Sum_probs=72.3

Q ss_pred             EEEEEEeCCCchhh-----hccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccc
Q 030364           59 IKFDIWDTAGQERY-----HSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKV  133 (178)
Q Consensus        59 ~~~~i~d~~g~~~~-----~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~  133 (178)
                      .++.|+||||....     .......+..+|+++||+|+....+... ....+.+... ..+.|+++|+||+|..+....
T Consensus       230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D-eeIlk~Lkk~-~K~~PVILVVNKIDl~dreed  307 (741)
T PRK09866        230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD-EEVREAILAV-GQSVPLYVLVNKFDQQDRNSD  307 (741)
T ss_pred             CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH-HHHHHHHHhc-CCCCCEEEEEEcccCCCcccc
Confidence            45679999997542     2233447899999999999987433332 2233444332 223599999999998543322


Q ss_pred             CHHHHHHHHH----Hc---CCeEEEEeCCCCCCHHHHHHHHHhh
Q 030364          134 KNEEGELYAQ----EN---GLSFLETSAKSAHNVNELFYEIGDC  170 (178)
Q Consensus       134 ~~~~~~~~~~----~~---~~~~~~~Sa~~~~~i~~~~~~l~~~  170 (178)
                      ..+....+..    ..   ...++++||++|.|++.+++.|.+.
T Consensus       308 dkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~~  351 (741)
T PRK09866        308 DADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELANN  351 (741)
T ss_pred             hHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHhC
Confidence            2333333322    11   2379999999999999999999873

>PRK09602 translation-associated GTPase; Reviewed

Probab=99.64  E-value=1.4e-14  Score=108.25  Aligned_cols=83  Identities=18%  Similarity=0.159  Sum_probs=54.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEE---------------------eC-CeEEEEEEEeCCC
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLS---------------------LN-EVTIKFDIWDTAG   68 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~---------------------~~-~~~~~~~i~d~~g   68 (178)
                      ++|.++|.||+|||||+|+|++........+..+.+.......                     .+ .....+++||+||
T Consensus         2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG   81 (396)
T PRK09602          2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG   81 (396)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence            5899999999999999999998765432122222222121111                     11 2346789999999


Q ss_pred             c----hhhhccchhh---hcCCcEEEEEEECC
Q 030364           69 Q----ERYHSLAPMY---YRGAAAAVVVYDIT   93 (178)
Q Consensus        69 ~----~~~~~~~~~~---~~~~d~~i~v~d~~   93 (178)
                      .    +....+...+   ++.+|++++|+|..
T Consensus        82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~  113 (396)
T PRK09602         82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS  113 (396)
T ss_pred             cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence            5    2233333334   88999999999997

>PRK00007 elongation factor G; Reviewed

Probab=99.62  E-value=1.8e-14  Score=115.08  Aligned_cols=121  Identities=16%  Similarity=0.125  Sum_probs=80.5

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHHh--CcCCC--Cc------------cCceeeeEEEEEEEeCCeEEEEEEEeCCCch
Q 030364            7 KNIQVKLVLLGDMGTGKTSLVLRFVK--GQFFD--FQ------------ESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE   70 (178)
Q Consensus         7 ~~~~~~i~v~G~~~~GKStl~~~l~~--~~~~~--~~------------~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~   70 (178)
                      .....+|+++|++++|||||+++|+.  +....  ..            +...+.+.......+.....++.++||||+.
T Consensus         7 ~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~   86 (693)
T PRK00007          7 LERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHV   86 (693)
T ss_pred             ccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcH
Confidence            44577999999999999999999974  21100  00            0112222222222232234678899999998


Q ss_pred             hhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccc
Q 030364           71 RYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR  131 (178)
Q Consensus        71 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~  131 (178)
                      .|.......+..+|++++|+|+...-.... ...+..+...   +.|.++++||+|+..+.
T Consensus        87 ~f~~ev~~al~~~D~~vlVvda~~g~~~qt-~~~~~~~~~~---~~p~iv~vNK~D~~~~~  143 (693)
T PRK00007         87 DFTIEVERSLRVLDGAVAVFDAVGGVEPQS-ETVWRQADKY---KVPRIAFVNKMDRTGAD  143 (693)
T ss_pred             HHHHHHHHHHHHcCEEEEEEECCCCcchhh-HHHHHHHHHc---CCCEEEEEECCCCCCCC
Confidence            887777778899999999999886533322 2333444433   67889999999987533

>cd00066 G-alpha G protein alpha subunit

Probab=99.59  E-value=5.1e-14  Score=102.86  Aligned_cols=120  Identities=18%  Similarity=0.233  Sum_probs=86.1

Q ss_pred             eEEEEEEEeCCCchhhhccchhhhcCCcEEEEEEECCCH----------hHHHHHHHHHHHHHHhC-CCCceEEEEEeCC
Q 030364           57 VTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSM----------DSFERAKKWVQELQRQG-NPNLIMFLVANKV  125 (178)
Q Consensus        57 ~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~-~~~~~~ivv~nK~  125 (178)
                      ..+.+.+||++|+...+..|..++.+++++++|+|.++.          ..+......+..+.... ..+.|+++++||.
T Consensus       159 ~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~  238 (317)
T cd00066         159 KNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKK  238 (317)
T ss_pred             cceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccCh
Confidence            357788999999999999999999999999999999974          34555555555554433 3689999999999


Q ss_pred             CCcccc----------------ccCHHHHHHHHHH----------cCCeEEEEeCCCCCCHHHHHHHHHhhcccccc
Q 030364          126 DLEEKR----------------KVKNEEGELYAQE----------NGLSFLETSAKSAHNVNELFYEIGDCTECFSL  176 (178)
Q Consensus       126 D~~~~~----------------~~~~~~~~~~~~~----------~~~~~~~~Sa~~~~~i~~~~~~l~~~i~~~~~  176 (178)
                      |+....                .-..+.+..+...          ..+....++|.+..+++.+|+.+.+.|....+
T Consensus       239 D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~~~l  315 (317)
T cd00066         239 DLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQNNL  315 (317)
T ss_pred             HHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHHHHh
Confidence            963210                1122333333221          23456778999999999999999887765443

The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.

>PRK12740 elongation factor G; Reviewed

Probab=99.59  E-value=5.2e-14  Score=112.39  Aligned_cols=109  Identities=18%  Similarity=0.122  Sum_probs=72.9

Q ss_pred             EcCCCCCHHHHHHHHHhCcCC--C--Cc------------cCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhh
Q 030364           16 LGDMGTGKTSLVLRFVKGQFF--D--FQ------------ESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY   79 (178)
Q Consensus        16 ~G~~~~GKStl~~~l~~~~~~--~--~~------------~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~   79 (178)
                      +|++++|||||+++|....-.  .  ..            ....+.+.......+....+.+.+||+||+..+...+..+
T Consensus         1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~   80 (668)
T PRK12740          1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA   80 (668)
T ss_pred             CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence            699999999999999653211  0  00            0011112222222233334778899999998888878888


Q ss_pred             hcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCc
Q 030364           80 YRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLE  128 (178)
Q Consensus        80 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~  128 (178)
                      +..+|++++|+|++........ ..+..+..   .+.|+++++||+|+.
T Consensus        81 l~~aD~vllvvd~~~~~~~~~~-~~~~~~~~---~~~p~iiv~NK~D~~  125 (668)
T PRK12740         81 LRVLDGAVVVVCAVGGVEPQTE-TVWRQAEK---YGVPRIIFVNKMDRA  125 (668)
T ss_pred             HHHhCeEEEEEeCCCCcCHHHH-HHHHHHHH---cCCCEEEEEECCCCC
Confidence            9999999999999986554433 22333333   368899999999975

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=99.57  E-value=1.4e-13  Score=104.08  Aligned_cols=163  Identities=18%  Similarity=0.234  Sum_probs=122.6

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEE
Q 030364            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (178)
Q Consensus         8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i   87 (178)
                      ...+.+.|+|+.++|||.+++.++++.+...+..+....+....+...+....+.+-|.+-. ........- ..||+++
T Consensus       423 R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv~~  500 (625)
T KOG1707|consen  423 RKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDVAC  500 (625)
T ss_pred             ceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceeeeEE
Confidence            45789999999999999999999998887766666666666666666677777788887754 222222222 7799999


Q ss_pred             EEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCC-eEEEEeCCCCCCHHHHHHH
Q 030364           88 VVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGL-SFLETSAKSAHNVNELFYE  166 (178)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~  166 (178)
                      ++||.+++.+|+.+...++.-...  ...|+++|++|+|+.+..+.......++++.+++ +-+..|.+...+ .++|..
T Consensus       501 ~~YDsS~p~sf~~~a~v~~~~~~~--~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~P~~~S~~~~~s-~~lf~k  577 (625)
T KOG1707|consen  501 LVYDSSNPRSFEYLAEVYNKYFDL--YKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPPPIHISSKTLSS-NELFIK  577 (625)
T ss_pred             EecccCCchHHHHHHHHHHHhhhc--cCCceEEEeeccccchhhhccCCChHHHHHhcCCCCCeeeccCCCCC-chHHHH
Confidence            999999999999887666554433  6899999999999987665444445889999998 456777764333 899999


Q ss_pred             HHhhccccc
Q 030364          167 IGDCTECFS  175 (178)
Q Consensus       167 l~~~i~~~~  175 (178)
                      |.....-.+
T Consensus       578 L~~~A~~Ph  586 (625)
T KOG1707|consen  578 LATMAQYPH  586 (625)
T ss_pred             HHHhhhCCC
Confidence            887765443

>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]

Probab=99.57  E-value=8.8e-15  Score=108.90  Aligned_cols=165  Identities=15%  Similarity=0.129  Sum_probs=112.8

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhh--hc-----c--ch
Q 030364            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERY--HS-----L--AP   77 (178)
Q Consensus         7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~--~~-----~--~~   77 (178)
                      .+....+++||.|++|||||+|.++.....-...+.+  +.......++.....++++||||.-..  ..     +  ..
T Consensus       165 Dp~trTlllcG~PNVGKSSf~~~vtradvevqpYaFT--TksL~vGH~dykYlrwQViDTPGILD~plEdrN~IEmqsIT  242 (620)
T KOG1490|consen  165 DPNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFT--TKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQIIT  242 (620)
T ss_pred             CCCcCeEEEecCCCCCcHhhcccccccccccCCcccc--cchhhhhhhhhheeeeeecCCccccCcchhhhhHHHHHHHH
Confidence            3456789999999999999999988766543322222  222233344555677889999995211  00     0  01


Q ss_pred             hhhcCCcEEEEEEECCC--HhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHH---HHHHcCCeEEEE
Q 030364           78 MYYRGAAAAVVVYDITS--MDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGEL---YAQENGLSFLET  152 (178)
Q Consensus        78 ~~~~~~d~~i~v~d~~~--~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~---~~~~~~~~~~~~  152 (178)
                      ....--.+++|+.|++.  +-|.+....++..+... ..+.|.|+|+||+|...+..+..+....   ....-+++++++
T Consensus       243 ALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpL-FaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~t  321 (620)
T KOG1490|consen  243 ALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPL-FANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQT  321 (620)
T ss_pred             HHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHH-hcCCceEEEeecccccCccccCHHHHHHHHHHHhccCceEEEe
Confidence            11122346899999995  45677766777777765 3588999999999998877776655333   333345899999


Q ss_pred             eCCCCCCHHHHHHHHHhhcccc
Q 030364          153 SAKSAHNVNELFYEIGDCTECF  174 (178)
Q Consensus       153 Sa~~~~~i~~~~~~l~~~i~~~  174 (178)
                      |+.+.+|+-++.+..++.+.+.
T Consensus       322 S~~~eegVm~Vrt~ACe~LLa~  343 (620)
T KOG1490|consen  322 SCVQEEGVMDVRTTACEALLAA  343 (620)
T ss_pred             cccchhceeeHHHHHHHHHHHH
Confidence            9999999999888777766544

>TIGR00101 ureG urease accessory protein UreG

Probab=99.57  E-value=1.1e-13  Score=94.61  Aligned_cols=103  Identities=19%  Similarity=0.193  Sum_probs=64.4

Q ss_pred             EEEEEEeCCCchhhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHH
Q 030364           59 IKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEG  138 (178)
Q Consensus        59 ~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~  138 (178)
                      ....++++.|..-.....+.   -+|.+|.|+|+.+.++...  .....+.      ..-++++||+|+.+......+..
T Consensus        92 ~D~iiIEt~G~~l~~~~~~~---l~~~~i~vvD~~~~~~~~~--~~~~qi~------~ad~~~~~k~d~~~~~~~~~~~~  160 (199)
T TIGR00101        92 LEMVFIESGGDNLSATFSPE---LADLTIFVIDVAAGDKIPR--KGGPGIT------RSDLLVINKIDLAPMVGADLGVM  160 (199)
T ss_pred             CCEEEEECCCCCcccccchh---hhCcEEEEEEcchhhhhhh--hhHhHhh------hccEEEEEhhhccccccccHHHH
Confidence            44557788774222222221   2578999999998665321  1111121      11288999999975322223333


Q ss_pred             HHHHHH--cCCeEEEEeCCCCCCHHHHHHHHHhhcc
Q 030364          139 ELYAQE--NGLSFLETSAKSAHNVNELFYEIGDCTE  172 (178)
Q Consensus       139 ~~~~~~--~~~~~~~~Sa~~~~~i~~~~~~l~~~i~  172 (178)
                      .+..+.  .+.+++++||++|+|+++++++|.+.+.
T Consensus       161 ~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~~  196 (199)
T TIGR00101       161 ERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYAL  196 (199)
T ss_pred             HHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence            333333  4579999999999999999999997653

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=99.57  E-value=1.9e-14  Score=88.29  Aligned_cols=137  Identities=21%  Similarity=0.235  Sum_probs=93.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCch----hhhccchhhhcCCcEEE
Q 030364           12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE----RYHSLAPMYYRGAAAAV   87 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~----~~~~~~~~~~~~~d~~i   87 (178)
                      ||+++|..|+|||||.+.|.+...-  +..|..       +.+....    .+|+||.-    .+.........++|+++
T Consensus         3 ri~~vG~~gcGKTtL~q~L~G~~~l--ykKTQA-------ve~~d~~----~IDTPGEy~~~~~~Y~aL~tt~~dadvi~   69 (148)
T COG4917           3 RIAFVGQVGCGKTTLFQSLYGNDTL--YKKTQA-------VEFNDKG----DIDTPGEYFEHPRWYHALITTLQDADVII   69 (148)
T ss_pred             eeEEecccccCchhHHHHhhcchhh--hcccce-------eeccCcc----ccCCchhhhhhhHHHHHHHHHhhccceee
Confidence            7999999999999999999876542  122221       1222211    58999852    22222344567899999


Q ss_pred             EEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCC-eEEEEeCCCCCCHHHHHHH
Q 030364           88 VVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGL-SFLETSAKSAHNVNELFYE  166 (178)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~  166 (178)
                      +|-+++++++.-.     ..+..  .-..|+|=|++|.|+++...+  +....|..+-|. ++|.+|+.++.|++++++.
T Consensus        70 ~v~~and~~s~f~-----p~f~~--~~~k~vIgvVTK~DLaed~dI--~~~~~~L~eaGa~~IF~~s~~d~~gv~~l~~~  140 (148)
T COG4917          70 YVHAANDPESRFP-----PGFLD--IGVKKVIGVVTKADLAEDADI--SLVKRWLREAGAEPIFETSAVDNQGVEELVDY  140 (148)
T ss_pred             eeecccCccccCC-----ccccc--ccccceEEEEecccccchHhH--HHHHHHHHHcCCcceEEEeccCcccHHHHHHH
Confidence            9999999865221     11111  124558889999999864433  455666666776 7999999999999999998


Q ss_pred             HHhh
Q 030364          167 IGDC  170 (178)
Q Consensus       167 l~~~  170 (178)
                      |...
T Consensus       141 L~~~  144 (148)
T COG4917         141 LASL  144 (148)
T ss_pred             HHhh
Confidence            8754

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=99.57  E-value=7.2e-14  Score=98.50  Aligned_cols=121  Identities=12%  Similarity=0.132  Sum_probs=70.9

Q ss_pred             CCCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCc-cCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhc---c------
Q 030364            6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQ-ESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHS---L------   75 (178)
Q Consensus         6 ~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~---~------   75 (178)
                      ..+..++|+|+|.+|+|||||+|++++....... ....+..........++  ..+.+|||||......   .      
T Consensus        27 ~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g--~~i~vIDTPGl~~~~~~~~~~~~~~~  104 (249)
T cd01853          27 ELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDG--FKLNIIDTPGLLESVMDQRVNRKILS  104 (249)
T ss_pred             hccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCcCcchhhHHHHHHHHH
Confidence            4456899999999999999999999987653321 11122222222233344  5678999999754311   0      


Q ss_pred             -chhhhc--CCcEEEEEEECCCHh-HHHHHHHHHHHHHHhCCC--CceEEEEEeCCCCcc
Q 030364           76 -APMYYR--GAAAAVVVYDITSMD-SFERAKKWVQELQRQGNP--NLIMFLVANKVDLEE  129 (178)
Q Consensus        76 -~~~~~~--~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~--~~~~ivv~nK~D~~~  129 (178)
                       ...++.  ..|++++|..++... .... ...++.+......  -.++++|.||+|...
T Consensus       105 ~I~~~l~~~~idvIL~V~rlD~~r~~~~d-~~llk~I~e~fG~~i~~~~ivV~T~~d~~~  163 (249)
T cd01853         105 SIKRYLKKKTPDVVLYVDRLDMYRRDYLD-LPLLRAITDSFGPSIWRNAIVVLTHAASSP  163 (249)
T ss_pred             HHHHHHhccCCCEEEEEEcCCCCCCCHHH-HHHHHHHHHHhChhhHhCEEEEEeCCccCC
Confidence             112332  578888887665421 1221 2233333332211  245899999999754

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=99.57  E-value=2.3e-14  Score=101.01  Aligned_cols=99  Identities=21%  Similarity=0.315  Sum_probs=80.1

Q ss_pred             hhhhccchhhhcCCcEEEEEEECCCHh-HHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCe
Q 030364           70 ERYHSLAPMYYRGAAAAVVVYDITSMD-SFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLS  148 (178)
Q Consensus        70 ~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~  148 (178)
                      ++++.+.+.+++++|.+++|+|+.++. +++.+.+|+..+..   .+.|+++|+||+|+.+...+..+....+. ..+++
T Consensus        24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~---~~i~~vIV~NK~DL~~~~~~~~~~~~~~~-~~g~~   99 (245)
T TIGR00157        24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA---QNIEPIIVLNKIDLLDDEDMEKEQLDIYR-NIGYQ   99 (245)
T ss_pred             cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECcccCCCHHHHHHHHHHHH-HCCCe
Confidence            567777888999999999999999877 89999999876643   47899999999999654444334444444 47899


Q ss_pred             EEEEeCCCCCCHHHHHHHHHhhcc
Q 030364          149 FLETSAKSAHNVNELFYEIGDCTE  172 (178)
Q Consensus       149 ~~~~Sa~~~~~i~~~~~~l~~~i~  172 (178)
                      ++.+||++|.|++++|+.|.+.+.
T Consensus       100 v~~~SAktg~gi~eLf~~l~~~~~  123 (245)
T TIGR00157       100 VLMTSSKNQDGLKELIEALQNRIS  123 (245)
T ss_pred             EEEEecCCchhHHHHHhhhcCCEE
Confidence            999999999999999998876544

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=99.56  E-value=1.6e-14  Score=115.78  Aligned_cols=120  Identities=20%  Similarity=0.190  Sum_probs=81.4

Q ss_pred             CCCceeEEEEEcCCCCCHHHHHHHHHhCc---------------CCCC---ccCceeeeEEEEEEEeCCeEEEEEEEeCC
Q 030364            6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQ---------------FFDF---QESTIGAAFFTQVLSLNEVTIKFDIWDTA   67 (178)
Q Consensus         6 ~~~~~~~i~v~G~~~~GKStl~~~l~~~~---------------~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~d~~   67 (178)
                      +.....+|+++|+.++|||||+++|+...               +.+.   ...+...........+++..+.+.+||||
T Consensus        15 ~~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTP   94 (720)
T TIGR00490        15 KPKFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTP   94 (720)
T ss_pred             CcccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCC
Confidence            34457899999999999999999997531               1100   11122222222233456677899999999


Q ss_pred             CchhhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcc
Q 030364           68 GQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEE  129 (178)
Q Consensus        68 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~  129 (178)
                      |+..|.......+..+|++++|+|+.+.-..+. ...++....   .+.|.++++||+|...
T Consensus        95 G~~~f~~~~~~al~~aD~~llVvda~~g~~~~t-~~~~~~~~~---~~~p~ivviNKiD~~~  152 (720)
T TIGR00490        95 GHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQT-ETVLRQALK---ENVKPVLFINKVDRLI  152 (720)
T ss_pred             CccccHHHHHHHHHhcCEEEEEEecCCCCCccH-HHHHHHHHH---cCCCEEEEEEChhccc
Confidence            999888888889999999999999987432221 122222222   3567889999999853

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>PRK14845 translation initiation factor IF-2; Provisional

Probab=99.56  E-value=1.7e-13  Score=111.98  Aligned_cols=143  Identities=20%  Similarity=0.210  Sum_probs=91.0

Q ss_pred             CCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCe-----------E-----EEEEEEeCCCchhhhccchhhhcCCc
Q 030364           21 TGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEV-----------T-----IKFDIWDTAGQERYHSLAPMYYRGAA   84 (178)
Q Consensus        21 ~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~-----~~~~i~d~~g~~~~~~~~~~~~~~~d   84 (178)
                      ++||||+.++.+......-....+...-...+..+..           .     -.+.||||||++.|..+....+..+|
T Consensus       472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aD  551 (1049)
T PRK14845        472 VHNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLAD  551 (1049)
T ss_pred             cccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCC
Confidence            3499999999876654332222222222222222210           0     12789999999999888877888999


Q ss_pred             EEEEEEECCC---HhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCH------------H-HHHH--------
Q 030364           85 AAVVVYDITS---MDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKN------------E-EGEL--------  140 (178)
Q Consensus        85 ~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~------------~-~~~~--------  140 (178)
                      ++++|+|+++   +++++.+.    .+..   .+.|+++++||+|+........            + ...+        
T Consensus       552 ivlLVVDa~~Gi~~qT~e~I~----~lk~---~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v  624 (1049)
T PRK14845        552 LAVLVVDINEGFKPQTIEAIN----ILRQ---YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYEL  624 (1049)
T ss_pred             EEEEEEECcccCCHhHHHHHH----HHHH---cCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHHH
Confidence            9999999986   44444432    2322   2679999999999854222100            0 0000        


Q ss_pred             ---HHH------------H--cCCeEEEEeCCCCCCHHHHHHHHHhh
Q 030364          141 ---YAQ------------E--NGLSFLETSAKSAHNVNELFYEIGDC  170 (178)
Q Consensus       141 ---~~~------------~--~~~~~~~~Sa~~~~~i~~~~~~l~~~  170 (178)
                         +..            .  ..++++++||++|+|+++++.+|...
T Consensus       625 ~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l  671 (1049)
T PRK14845        625 IGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGL  671 (1049)
T ss_pred             hhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHh
Confidence               111            1  13589999999999999999988654

>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily

Probab=99.55  E-value=5.1e-14  Score=89.26  Aligned_cols=114  Identities=32%  Similarity=0.421  Sum_probs=82.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCcCCCCcc-CceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEE
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQE-STIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVV   89 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v   89 (178)
                      +|++++|..|+|||+|+.++..+.+...+. ++.+                           +......+.++++.+++|
T Consensus         1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~---------------------------~~~~~~~~~~s~~~~~~v   53 (124)
T smart00010        1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG---------------------------IDVYDPTSYESFDVVLQC   53 (124)
T ss_pred             CEEEEECCCChhHHHHHHHHhcCCccccCceehhh---------------------------hhhccccccCCCCEEEEE
Confidence            489999999999999999997776643332 2222                           233345567889999999


Q ss_pred             EECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHH
Q 030364           90 YDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVN  161 (178)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  161 (178)
                      ++..+.++++.+  |...+......+.|.++++||.|+....+......        .+++++|++++.|+.
T Consensus        54 ~~~~~~~s~~~~--~~~~i~~~~k~dl~~~~~~nk~dl~~~~~~~~~~~--------~~~~~~s~~~~~~~~  115 (124)
T smart00010       54 WRVDDRDSADNK--NVPEVLVGNKSDLPILVGGNRDVLEEERQVATEEG--------LEFAETSAKTPEEGE  115 (124)
T ss_pred             EEccCHHHHHHH--hHHHHHhcCCCCCcEEEEeechhhHhhCcCCHHHH--------HHHHHHhCCCcchhh
Confidence            999999998766  66666655456788999999999854333333222        345678889998874

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.

>KOG3905 consensus Dynein light intermediate chain [Cell motility]

Probab=99.55  E-value=3.6e-13  Score=95.72  Aligned_cols=163  Identities=17%  Similarity=0.278  Sum_probs=114.0

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEe--CCeEEEEEEEeCCCchhhhccchhhhcCC---
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSL--NEVTIKFDIWDTAGQERYHSLAPMYYRGA---   83 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~d~~g~~~~~~~~~~~~~~~---   83 (178)
                      ..-+|+|+|..++|||||+.+|.+.+.   +.+..+..|....+.-  .+...++.+|-..|+--+..+....+...   
T Consensus        51 sgk~VlvlGdn~sGKtsLi~klqg~e~---~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~a  127 (473)
T KOG3905|consen   51 SGKNVLVLGDNGSGKTSLISKLQGSET---VKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLA  127 (473)
T ss_pred             CCCeEEEEccCCCchhHHHHHhhcccc---cCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCcc
Confidence            366899999999999999999987663   4455555554444322  33345677898888765555544444333   


Q ss_pred             -cEEEEEEECCCH-hHHHHHHHHHHHHHHh-------------------------CC-----------------------
Q 030364           84 -AAAVVVYDITSM-DSFERAKKWVQELQRQ-------------------------GN-----------------------  113 (178)
Q Consensus        84 -d~~i~v~d~~~~-~s~~~~~~~~~~~~~~-------------------------~~-----------------------  113 (178)
                       ..+|++.|.+++ ..++.++.|...+.++                         ..                       
T Consensus       128 etlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~  207 (473)
T KOG3905|consen  128 ETLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEH  207 (473)
T ss_pred             ceEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCccccc
Confidence             378899999998 4566677775443211                         00                       


Q ss_pred             -------------CCceEEEEEeCCCCcc----cccc-------CHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHh
Q 030364          114 -------------PNLIMFLVANKVDLEE----KRKV-------KNEEGELYAQENGLSFLETSAKSAHNVNELFYEIGD  169 (178)
Q Consensus       114 -------------~~~~~ivv~nK~D~~~----~~~~-------~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  169 (178)
                                   -++|++||++|||...    .-+.       .....+.||..+|...+.+|++...|++-+...|++
T Consensus       208 ~llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYivh  287 (473)
T KOG3905|consen  208 VLLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIVH  287 (473)
T ss_pred             cccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHHH
Confidence                         0567999999999732    1111       123457788899999999999999999999999998


Q ss_pred             hcccc
Q 030364          170 CTECF  174 (178)
Q Consensus       170 ~i~~~  174 (178)
                      ++=.+
T Consensus       288 r~yG~  292 (473)
T KOG3905|consen  288 RSYGF  292 (473)
T ss_pred             HhcCc
Confidence            76543

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=99.54  E-value=2.2e-13  Score=97.67  Aligned_cols=118  Identities=12%  Similarity=0.157  Sum_probs=68.1

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHHhCcCCCC-ccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccc-------hhh
Q 030364            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDF-QESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLA-------PMY   79 (178)
Q Consensus         8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~-------~~~   79 (178)
                      ...++|+++|.+|+||||++|++++...... .....+..........+  ...+.++||||........       ..+
T Consensus        36 ~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~--G~~l~VIDTPGL~d~~~~~e~~~~~ik~~  113 (313)
T TIGR00991        36 VSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRA--GFTLNIIDTPGLIEGGYINDQAVNIIKRF  113 (313)
T ss_pred             ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEEC--CeEEEEEECCCCCchHHHHHHHHHHHHHH
Confidence            4688999999999999999999998764221 11111222212222334  3678899999965432211       111


Q ss_pred             h--cCCcEEEEEEECCC--HhHHHHHHHHHHHHHHhC--CCCceEEEEEeCCCCcc
Q 030364           80 Y--RGAAAAVVVYDITS--MDSFERAKKWVQELQRQG--NPNLIMFLVANKVDLEE  129 (178)
Q Consensus        80 ~--~~~d~~i~v~d~~~--~~s~~~~~~~~~~~~~~~--~~~~~~ivv~nK~D~~~  129 (178)
                      +  ...|++++|..++.  ....+  ...++.+....  ..-.+.+|+.|+.|...
T Consensus       114 l~~~g~DvVLyV~rLD~~R~~~~D--kqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~  167 (313)
T TIGR00991       114 LLGKTIDVLLYVDRLDAYRVDTLD--GQVIRAITDSFGKDIWRKSLVVLTHAQFSP  167 (313)
T ss_pred             hhcCCCCEEEEEeccCcccCCHHH--HHHHHHHHHHhhhhhhccEEEEEECCccCC
Confidence            1  26899999965542  22111  12223333221  11245899999999653

>PTZ00258 GTP-binding protein; Provisional

Probab=99.53  E-value=3.4e-13  Score=100.04  Aligned_cols=86  Identities=16%  Similarity=0.047  Sum_probs=57.7

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCe---------------EEEEEEEeCCCchhh
Q 030364            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEV---------------TIKFDIWDTAGQERY   72 (178)
Q Consensus         8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~d~~g~~~~   72 (178)
                      ...++|.++|.||+|||||+|+|++........|.++.+.....+.+++.               ..++.++|+||...-
T Consensus        19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~g   98 (390)
T PTZ00258         19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKG   98 (390)
T ss_pred             CCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcC
Confidence            45789999999999999999999876654333344443444444444332               235889999995321


Q ss_pred             h-------ccchhhhcCCcEEEEEEECC
Q 030364           73 H-------SLAPMYYRGAAAAVVVYDIT   93 (178)
Q Consensus        73 ~-------~~~~~~~~~~d~~i~v~d~~   93 (178)
                      .       ...-..++.+|++++|+|..
T Consensus        99 a~~g~gLg~~fL~~Ir~aD~il~VVd~f  126 (390)
T PTZ00258         99 ASEGEGLGNAFLSHIRAVDGIYHVVRAF  126 (390)
T ss_pred             CcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence            1       12233467899999999974

>PRK13768 GTPase; Provisional

Probab=99.52  E-value=2.9e-13  Score=95.98  Aligned_cols=112  Identities=20%  Similarity=0.192  Sum_probs=69.1

Q ss_pred             EEEEEeCCCchhhh---ccchhh---hcC--CcEEEEEEECCCHhHHHHH--HHHHHHHHHhCCCCceEEEEEeCCCCcc
Q 030364           60 KFDIWDTAGQERYH---SLAPMY---YRG--AAAAVVVYDITSMDSFERA--KKWVQELQRQGNPNLIMFLVANKVDLEE  129 (178)
Q Consensus        60 ~~~i~d~~g~~~~~---~~~~~~---~~~--~d~~i~v~d~~~~~s~~~~--~~~~~~~~~~~~~~~~~ivv~nK~D~~~  129 (178)
                      .+.+||+||+.+..   ..+..+   +..  .+++++++|+.........  ..++...... ..+.|+++|+||+|+.+
T Consensus        98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~-~~~~~~i~v~nK~D~~~  176 (253)
T PRK13768         98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQL-RLGLPQIPVLNKADLLS  176 (253)
T ss_pred             CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHH-HcCCCEEEEEEhHhhcC
Confidence            57799999986543   222222   222  8999999999754322221  1222221111 24789999999999865


Q ss_pred             ccccCHHHH--H------------------------HHHHHcC--CeEEEEeCCCCCCHHHHHHHHHhhcc
Q 030364          130 KRKVKNEEG--E------------------------LYAQENG--LSFLETSAKSAHNVNELFYEIGDCTE  172 (178)
Q Consensus       130 ~~~~~~~~~--~------------------------~~~~~~~--~~~~~~Sa~~~~~i~~~~~~l~~~i~  172 (178)
                      ..+......  .                        ...+..+  .+++++|++++.|+++++++|.+.+.
T Consensus       177 ~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~  247 (253)
T PRK13768        177 EEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFC  247 (253)
T ss_pred             chhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcC
Confidence            433211000  0                        0111223  58999999999999999999988763

>smart00275 G_alpha G protein alpha subunit

Probab=99.52  E-value=2.9e-13  Score=99.65  Aligned_cols=117  Identities=15%  Similarity=0.217  Sum_probs=83.0

Q ss_pred             EEEEEEEeCCCchhhhccchhhhcCCcEEEEEEECCCH----------hHHHHHHHHHHHHHHh-CCCCceEEEEEeCCC
Q 030364           58 TIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSM----------DSFERAKKWVQELQRQ-GNPNLIMFLVANKVD  126 (178)
Q Consensus        58 ~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~-~~~~~~~ivv~nK~D  126 (178)
                      .+.+.+||.+|+...+..|..++.+++++|||+|+++.          ..+......+..+... ...+.|+++++||.|
T Consensus       183 ~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D  262 (342)
T smart00275      183 KLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKID  262 (342)
T ss_pred             CeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHH
Confidence            35678999999999999999999999999999999963          3455555555555443 246899999999999


Q ss_pred             Ccccc---------------ccCHHHHHHHHHH-----------cCCeEEEEeCCCCCCHHHHHHHHHhhcccc
Q 030364          127 LEEKR---------------KVKNEEGELYAQE-----------NGLSFLETSAKSAHNVNELFYEIGDCTECF  174 (178)
Q Consensus       127 ~~~~~---------------~~~~~~~~~~~~~-----------~~~~~~~~Sa~~~~~i~~~~~~l~~~i~~~  174 (178)
                      +....               .-..+.+..+...           ..+-...|+|.+..++..+|+.+.+.|...
T Consensus       263 ~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~~  336 (342)
T smart00275      263 LFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQR  336 (342)
T ss_pred             hHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHHH
Confidence            74210               0122233322211           124557788999999999999887766543

Subunit of G proteins that contains the guanine nucleotide binding site

>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]

Probab=99.51  E-value=3.1e-13  Score=102.30  Aligned_cols=155  Identities=19%  Similarity=0.251  Sum_probs=104.9

Q ss_pred             CCCceeEEEEEcCCCCCHHHHHHHHHhC--------------------cC---------CCCccCceeeeEEEEEEEeCC
Q 030364            6 NKNIQVKLVLLGDMGTGKTSLVLRFVKG--------------------QF---------FDFQESTIGAAFFTQVLSLNE   56 (178)
Q Consensus         6 ~~~~~~~i~v~G~~~~GKStl~~~l~~~--------------------~~---------~~~~~~~~~~~~~~~~~~~~~   56 (178)
                      .+...++++++|+..+|||||+.+++..                    +.         ....++..+.+.......++-
T Consensus       173 ~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes  252 (603)
T KOG0458|consen  173 DPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFES  252 (603)
T ss_pred             CCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEec
Confidence            3446899999999999999999998761                    10         111233445555566666667


Q ss_pred             eEEEEEEEeCCCchhhhccchhhhcCCcEEEEEEECCCHhHHHH-------HHHHHHHHHHhCCCCceEEEEEeCCCCcc
Q 030364           57 VTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFER-------AKKWVQELQRQGNPNLIMFLVANKVDLEE  129 (178)
Q Consensus        57 ~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~-------~~~~~~~~~~~~~~~~~~ivv~nK~D~~~  129 (178)
                      ....+.+.|+||+..|......-...+|+.++|+|++..+ |+.       .++....++...  -..++|++||+|+.+
T Consensus       253 ~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~-FE~gfd~~gQtrEha~llr~Lg--i~qlivaiNKmD~V~  329 (603)
T KOG0458|consen  253 KSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGE-FESGFDPGGQTREHALLLRSLG--ISQLIVAINKMDLVS  329 (603)
T ss_pred             CceeEEEecCCCccccchhhhccccccceEEEEEECCcch-hhhccCCCCchHHHHHHHHHcC--cceEEEEeecccccC
Confidence            7788899999999888888888888999999999999532 322       222223333332  344789999999865


Q ss_pred             ccccCHH----HHHHHH-HHcC-----CeEEEEeCCCCCCHHHH
Q 030364          130 KRKVKNE----EGELYA-QENG-----LSFLETSAKSAHNVNEL  163 (178)
Q Consensus       130 ~~~~~~~----~~~~~~-~~~~-----~~~~~~Sa~~~~~i~~~  163 (178)
                      =.+-..+    ....|. +..|     +.|++||+..|+|+...
T Consensus       330 Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~  373 (603)
T KOG0458|consen  330 WSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI  373 (603)
T ss_pred             ccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence            3222122    222333 3333     48999999999997654

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=99.51  E-value=1.7e-13  Score=94.90  Aligned_cols=159  Identities=18%  Similarity=0.210  Sum_probs=89.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCcCCCCcc--CceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhc--------c---ch
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQE--STIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHS--------L---AP   77 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~--------~---~~   77 (178)
                      ++|+++|.+|+||||++|.+++........  ...+..........++  ..+.++||||..+...        .   ..
T Consensus         1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g--~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~   78 (212)
T PF04548_consen    1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDG--RQVTVIDTPGLFDSDGSDEEIIREIKRCLS   78 (212)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETT--EEEEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecc--eEEEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence            589999999999999999999887654432  1222233344446666  4566999999422111        1   11


Q ss_pred             hhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCC--CceEEEEEeCCCCccccccC-------HHHHHHHHHHcCCe
Q 030364           78 MYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNP--NLIMFLVANKVDLEEKRKVK-------NEEGELYAQENGLS  148 (178)
Q Consensus        78 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~~ivv~nK~D~~~~~~~~-------~~~~~~~~~~~~~~  148 (178)
                      ....+.+++++|+..... +... ...++.+.....+  -..++||.|..|...+..+.       ......+.+..+-.
T Consensus        79 ~~~~g~ha~llVi~~~r~-t~~~-~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R  156 (212)
T PF04548_consen   79 LCSPGPHAFLLVIPLGRF-TEED-REVLELLQEIFGEEIWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGGR  156 (212)
T ss_dssp             HTTT-ESEEEEEEETTB--SHHH-HHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             hccCCCeEEEEEEecCcc-hHHH-HHHHHHHHHHccHHHHhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCCE
Confidence            124568999999999832 2111 1222222222111  13478888988865544321       11234455666778


Q ss_pred             EEEEeCC------CCCCHHHHHHHHHhhccc
Q 030364          149 FLETSAK------SAHNVNELFYEIGDCTEC  173 (178)
Q Consensus       149 ~~~~Sa~------~~~~i~~~~~~l~~~i~~  173 (178)
                      |...+..      ....+.++++.+-+.+..
T Consensus       157 ~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~  187 (212)
T PF04548_consen  157 YHVFNNKTKDKEKDESQVSELLEKIEEMVQE  187 (212)
T ss_dssp             EEECCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEeccccchhhhHHHHHHHHHHHHHHHHH
Confidence            8888776      335677777776665543

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=99.50  E-value=6.8e-13  Score=95.20  Aligned_cols=153  Identities=21%  Similarity=0.207  Sum_probs=103.2

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHHhCcC------------CC-------------------CccCceeeeEEEEEEEeC
Q 030364            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQF------------FD-------------------FQESTIGAAFFTQVLSLN   55 (178)
Q Consensus         7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~~------------~~-------------------~~~~~~~~~~~~~~~~~~   55 (178)
                      .+..+|.+-||...-|||||+-+|+.+..            ..                   +.+...+.+.......+.
T Consensus         3 ~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFs   82 (431)
T COG2895           3 HKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFS   82 (431)
T ss_pred             cccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecc
Confidence            34578999999999999999999987320            00                   011223334444444444


Q ss_pred             CeEEEEEEEeCCCchhhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCH
Q 030364           56 EVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKN  135 (178)
Q Consensus        56 ~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~  135 (178)
                      -...+|.+-||||++.|......-...||+.|+++|+... -+++.++. ..+... .--..++|.+||+|+.+..+-..
T Consensus        83 T~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~G-vl~QTrRH-s~I~sL-LGIrhvvvAVNKmDLvdy~e~~F  159 (431)
T COG2895          83 TEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKG-VLEQTRRH-SFIASL-LGIRHVVVAVNKMDLVDYSEEVF  159 (431)
T ss_pred             cccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchh-hHHHhHHH-HHHHHH-hCCcEEEEEEeeecccccCHHHH
Confidence            4556888999999999999888888999999999999643 23332221 222221 11234788899999977554333


Q ss_pred             H----HHHHHHHHcCC---eEEEEeCCCCCCHHH
Q 030364          136 E----EGELYAQENGL---SFLETSAKSAHNVNE  162 (178)
Q Consensus       136 ~----~~~~~~~~~~~---~~~~~Sa~~~~~i~~  162 (178)
                      +    +-..|+..+++   .++++||+.|+|+-.
T Consensus       160 ~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~~  193 (431)
T COG2895         160 EAIVADYLAFAAQLGLKDVRFIPISALLGDNVVS  193 (431)
T ss_pred             HHHHHHHHHHHHHcCCCcceEEechhccCCcccc
Confidence            2    33556677764   799999999998753

>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]

Probab=99.50  E-value=1.8e-14  Score=100.00  Aligned_cols=170  Identities=15%  Similarity=0.203  Sum_probs=95.6

Q ss_pred             CCCCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCc-eeee------EEEE---------------------------
Q 030364            5 SNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQEST-IGAA------FFTQ---------------------------   50 (178)
Q Consensus         5 ~~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~-~~~~------~~~~---------------------------   50 (178)
                      ...++.+-|+|+|..|+|||||+++|...-......|. ...+      .+..                           
T Consensus        14 ~~~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~T   93 (366)
T KOG1532|consen   14 GAIQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVT   93 (366)
T ss_pred             ccccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhh
Confidence            34566889999999999999999998762211100000 0000      0000                           


Q ss_pred             --------------EEEeCCeEEEEEEEeCCCchhhh------ccchhhhcC--CcEEEEEEECCCHhHHHH-HHHHHHH
Q 030364           51 --------------VLSLNEVTIKFDIWDTAGQERYH------SLAPMYYRG--AAAAVVVYDITSMDSFER-AKKWVQE  107 (178)
Q Consensus        51 --------------~~~~~~~~~~~~i~d~~g~~~~~------~~~~~~~~~--~d~~i~v~d~~~~~s~~~-~~~~~~~  107 (178)
                                    .+......+...++||||+-+..      ......+..  .-++++++|.....+-.. +..++-.
T Consensus        94 sLNLF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYA  173 (366)
T KOG1532|consen   94 SLNLFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYA  173 (366)
T ss_pred             hHHHHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHH
Confidence                          00001234667799999973321      122222222  347778888764322111 2222222


Q ss_pred             HHHhCCCCceEEEEEeCCCCcccccc-----CHHH---H-H----------------HHHH-HcCCeEEEEeCCCCCCHH
Q 030364          108 LQRQGNPNLIMFLVANKVDLEEKRKV-----KNEE---G-E----------------LYAQ-ENGLSFLETSAKSAHNVN  161 (178)
Q Consensus       108 ~~~~~~~~~~~ivv~nK~D~~~~~~~-----~~~~---~-~----------------~~~~-~~~~~~~~~Sa~~~~~i~  161 (178)
                      .........|++++.||+|+.+..-.     ..+.   + .                .+-. ..++..+.+|+.+|.|++
T Consensus       174 cSilyktklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~d  253 (366)
T KOG1532|consen  174 CSILYKTKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFD  253 (366)
T ss_pred             HHHHHhccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHH
Confidence            22233468999999999998642100     0000   0 0                0011 134689999999999999


Q ss_pred             HHHHHHHhhcccc
Q 030364          162 ELFYEIGDCTECF  174 (178)
Q Consensus       162 ~~~~~l~~~i~~~  174 (178)
                      ++|.++-+.++++
T Consensus       254 df~~av~~~vdEy  266 (366)
T KOG1532|consen  254 DFFTAVDESVDEY  266 (366)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999888765

>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.50  E-value=1.7e-13  Score=97.21  Aligned_cols=172  Identities=17%  Similarity=0.176  Sum_probs=110.8

Q ss_pred             CcccCCCCceeEEEEEcCCCCCHHHHHHHHHhCcCCCC---ccCceee--e----------------EEEEEEEeC----
Q 030364            1 MARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDF---QESTIGA--A----------------FFTQVLSLN----   55 (178)
Q Consensus         1 m~~~~~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~---~~~~~~~--~----------------~~~~~~~~~----   55 (178)
                      |+.....++.++|.++|+..-|||||.++|.+--...+   .....+.  .                .+...-.++    
T Consensus         1 m~~~~~~Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~   80 (415)
T COG5257           1 MADPKHIQPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGA   80 (415)
T ss_pred             CCccccCCcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCC
Confidence            34444457899999999999999999999987321111   0000000  0                000000111    


Q ss_pred             --CeEEEEEEEeCCCchhhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccc
Q 030364           56 --EVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKV  133 (178)
Q Consensus        56 --~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~  133 (178)
                        .-...+.|.|.||++-.....-.-..-.|+.++|+.++.+..-.+.++.+-.+....  -..++++-||.|+......
T Consensus        81 ~~~l~R~VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIig--ik~iiIvQNKIDlV~~E~A  158 (415)
T COG5257          81 ETELVRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIG--IKNIIIVQNKIDLVSRERA  158 (415)
T ss_pred             CccEEEEEEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhc--cceEEEEecccceecHHHH
Confidence              123457899999998766655555566799999999997544344333333333332  2348899999998653322


Q ss_pred             --CHHHHHHHHHH---cCCeEEEEeCCCCCCHHHHHHHHHhhcccc
Q 030364          134 --KNEEGELYAQE---NGLSFLETSAKSAHNVNELFYEIGDCTECF  174 (178)
Q Consensus       134 --~~~~~~~~~~~---~~~~~~~~Sa~~~~~i~~~~~~l~~~i~~~  174 (178)
                        ..++..+|.+.   .+.|++++||..+.|++.++++|.+.|...
T Consensus       159 lE~y~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP  204 (415)
T COG5257         159 LENYEQIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTP  204 (415)
T ss_pred             HHHHHHHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCC
Confidence              23445555553   357999999999999999999999988754

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=99.49  E-value=7.8e-13  Score=98.00  Aligned_cols=163  Identities=18%  Similarity=0.243  Sum_probs=115.4

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCc--CCCC------------ccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhc
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVKGQ--FFDF------------QESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHS   74 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~~~--~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~   74 (178)
                      ...+|+++-+..-|||||+..|+.+.  |.+.            .+...+.+...+.-.+..+.+.+.+.||||+.+|..
T Consensus         4 ~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGG   83 (603)
T COG1217           4 DIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGG   83 (603)
T ss_pred             ccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccc
Confidence            35689999999999999999998743  1111            122334455555545555668899999999999999


Q ss_pred             cchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccc--cCHHHHHHHH------HHcC
Q 030364           75 LAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRK--VKNEEGELYA------QENG  146 (178)
Q Consensus        75 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~--~~~~~~~~~~------~~~~  146 (178)
                      .....++-+|++++++|+.+.. +.+.+..++....   .+.+.+||+||.|.+.++.  +..+-...|.      ++++
T Consensus        84 EVERvl~MVDgvlLlVDA~EGp-MPQTrFVlkKAl~---~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLd  159 (603)
T COG1217          84 EVERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALA---LGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQLD  159 (603)
T ss_pred             hhhhhhhhcceEEEEEEcccCC-CCchhhhHHHHHH---cCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhCC
Confidence            9999999999999999999743 3333333333333   3666799999999987653  2222222232      2356


Q ss_pred             CeEEEEeCCCCC----------CHHHHHHHHHhhccccc
Q 030364          147 LSFLETSAKSAH----------NVNELFYEIGDCTECFS  175 (178)
Q Consensus       147 ~~~~~~Sa~~~~----------~i~~~~~~l~~~i~~~~  175 (178)
                      +|++..|+..|.          ++.-+|+.|++.+....
T Consensus       160 FPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~  198 (603)
T COG1217         160 FPIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPK  198 (603)
T ss_pred             CcEEEeeccCceeccCccccccchhHHHHHHHHhCCCCC
Confidence            799999987764          58899999999887654

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=99.48  E-value=7.4e-13  Score=96.55  Aligned_cols=106  Identities=17%  Similarity=0.131  Sum_probs=67.4

Q ss_pred             EEEEEEEeCCCchhhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccC--H
Q 030364           58 TIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVK--N  135 (178)
Q Consensus        58 ~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~--~  135 (178)
                      .+.+.|+||+|.......   ....+|.++++.+...++.......   .+..     ..-++|+||+|+.......  .
T Consensus       148 g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k~---gi~E-----~aDIiVVNKaDl~~~~~a~~~~  216 (332)
T PRK09435        148 GYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIKK---GIME-----LADLIVINKADGDNKTAARRAA  216 (332)
T ss_pred             CCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHHh---hhhh-----hhheEEeehhcccchhHHHHHH
Confidence            467889999997633222   4677999999987555554443321   1111     1238999999986533211  1


Q ss_pred             HHHHHHHHH-------cCCeEEEEeCCCCCCHHHHHHHHHhhcccc
Q 030364          136 EEGELYAQE-------NGLSFLETSAKSAHNVNELFYEIGDCTECF  174 (178)
Q Consensus       136 ~~~~~~~~~-------~~~~~~~~Sa~~~~~i~~~~~~l~~~i~~~  174 (178)
                      .+.......       +..+++.+||+++.|+++++++|.+.+..+
T Consensus       217 ~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~~l  262 (332)
T PRK09435        217 AEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRAAL  262 (332)
T ss_pred             HHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence            111111111       235899999999999999999999876543

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=99.48  E-value=6.3e-13  Score=91.73  Aligned_cols=152  Identities=17%  Similarity=0.140  Sum_probs=83.1

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCcCCCCc------cCceee--------eEEEEEEEe------------------CC
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQ------ESTIGA--------AFFTQVLSL------------------NE   56 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~------~~~~~~--------~~~~~~~~~------------------~~   56 (178)
                      ....|.++|.+|+|||||++++.........      ....+.        ........-                  ..
T Consensus        21 ~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~~~~~  100 (207)
T TIGR00073        21 GLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALEDLPL  100 (207)
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHHHhcc
Confidence            3678899999999999999998764110000      000000        000000000                  00


Q ss_pred             eEEEEEEEeCCCchhhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHH
Q 030364           57 VTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNE  136 (178)
Q Consensus        57 ~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~  136 (178)
                      ....+.++|+.|.-. ..  ..+....+..+.++|+.+.+..  ..... ..     ...|.++++||+|+.+.......
T Consensus       101 ~~~d~IiIEt~G~l~-~~--~~~~~~~~~~i~Vvd~~~~d~~--~~~~~-~~-----~~~a~iiv~NK~Dl~~~~~~~~~  169 (207)
T TIGR00073       101 DDIDLLFIENVGNLV-CP--ADFDLGEHMRVVLLSVTEGDDK--PLKYP-GM-----FKEADLIVINKADLAEAVGFDVE  169 (207)
T ss_pred             CCCCEEEEecCCCcC-CC--cccccccCeEEEEEecCcccch--hhhhH-hH-----HhhCCEEEEEHHHccccchhhHH
Confidence            123556777776210 00  1111234555677787754321  11111 11     23567999999999653322223


Q ss_pred             HHHHHHHHc--CCeEEEEeCCCCCCHHHHHHHHHhhc
Q 030364          137 EGELYAQEN--GLSFLETSAKSAHNVNELFYEIGDCT  171 (178)
Q Consensus       137 ~~~~~~~~~--~~~~~~~Sa~~~~~i~~~~~~l~~~i  171 (178)
                      +.....+..  .++++.+||++|.|++++++++.+..
T Consensus       170 ~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~~  206 (207)
T TIGR00073       170 KMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQV  206 (207)
T ss_pred             HHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence            333333333  38999999999999999999998753

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.48  E-value=2.7e-13  Score=91.93  Aligned_cols=156  Identities=17%  Similarity=0.264  Sum_probs=100.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCcCC-CCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhc-----cchhhhcCC
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVKGQFF-DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHS-----LAPMYYRGA   83 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~-----~~~~~~~~~   83 (178)
                      +.||+++|.+|+|||++-..++.+... ....++.+.+.......+-| +..+.+||++|++.+..     .....+++.
T Consensus         4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflG-nl~LnlwDcGgqe~fmen~~~~q~d~iF~nV   82 (295)
T KOG3886|consen    4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLG-NLVLNLWDCGGQEEFMENYLSSQEDNIFRNV   82 (295)
T ss_pred             cceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhh-hheeehhccCCcHHHHHHHHhhcchhhheeh
Confidence            568999999999999987766654321 22333343444444444444 35678999999974432     456788999


Q ss_pred             cEEEEEEECCCHhHHHHHHHHHHH---HHHhCCCCceEEEEEeCCCCccccc--cCH----HHHHHHHHHcCCeEEEEeC
Q 030364           84 AAAVVVYDITSMDSFERAKKWVQE---LQRQGNPNLIMFLVANKVDLEEKRK--VKN----EEGELYAQENGLSFLETSA  154 (178)
Q Consensus        84 d~~i~v~d~~~~~s~~~~~~~~~~---~~~~~~~~~~~ivv~nK~D~~~~~~--~~~----~~~~~~~~~~~~~~~~~Sa  154 (178)
                      +++++|||++..+-...+..+-+.   +.++ .|...++...+|+|+.....  ...    +....+....++.++++|.
T Consensus        83 ~vli~vFDves~e~~~D~~~yqk~Le~ll~~-SP~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~~~~f~Tsi  161 (295)
T KOG3886|consen   83 QVLIYVFDVESREMEKDFHYYQKCLEALLQN-SPEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLECKCFPTSI  161 (295)
T ss_pred             eeeeeeeeccchhhhhhHHHHHHHHHHHHhc-CCcceEEEEEeechhcccchHHHHHHHHHHHHHHhcccccccccccch
Confidence            999999999987655555444442   3333 57788999999999854322  111    1223333445678899988


Q ss_pred             CCCCCHHHHHHHHH
Q 030364          155 KSAHNVNELFYEIG  168 (178)
Q Consensus       155 ~~~~~i~~~~~~l~  168 (178)
                      .+ +.+-.++..+.
T Consensus       162 wD-etl~KAWS~iv  174 (295)
T KOG3886|consen  162 WD-ETLYKAWSSIV  174 (295)
T ss_pred             hh-HHHHHHHHHHH
Confidence            77 34444444433

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=99.47  E-value=8.2e-14  Score=97.64  Aligned_cols=112  Identities=21%  Similarity=0.200  Sum_probs=59.2

Q ss_pred             EEEEEeCCCchhhhccchhhh--------cCCcEEEEEEECCCHhH-HHHHHHHHHHHHHhCCCCceEEEEEeCCCCccc
Q 030364           60 KFDIWDTAGQERYHSLAPMYY--------RGAAAAVVVYDITSMDS-FERAKKWVQELQRQGNPNLIMFLVANKVDLEEK  130 (178)
Q Consensus        60 ~~~i~d~~g~~~~~~~~~~~~--------~~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~  130 (178)
                      .+.++|||||.++...+....        ...-++++++|.....+ ...+..++..+.....-+.|.+.|+||+|+.++
T Consensus        92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~~  171 (238)
T PF03029_consen   92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLSK  171 (238)
T ss_dssp             SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-H
T ss_pred             cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcccc
Confidence            567999999987766655443        34558889999874332 111233333333222248999999999999652


Q ss_pred             cc------------c-------CHHHHHHHHHH---cC-C-eEEEEeCCCCCCHHHHHHHHHhhc
Q 030364          131 RK------------V-------KNEEGELYAQE---NG-L-SFLETSAKSAHNVNELFYEIGDCT  171 (178)
Q Consensus       131 ~~------------~-------~~~~~~~~~~~---~~-~-~~~~~Sa~~~~~i~~~~~~l~~~i  171 (178)
                      ..            .       ........++.   .+ . .++.+|+.+++|+++++..+-+.+
T Consensus       172 ~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~  236 (238)
T PF03029_consen  172 YLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN  236 (238)
T ss_dssp             HHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred             hhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence            20            0       00011112221   22 3 799999999999999999886653

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=99.47  E-value=4.3e-13  Score=109.15  Aligned_cols=120  Identities=17%  Similarity=0.140  Sum_probs=81.4

Q ss_pred             CCCCceeEEEEEcCCCCCHHHHHHHHHhCcCC--CC--------------ccCceeeeEEEEEEEe--------------
Q 030364            5 SNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFF--DF--------------QESTIGAAFFTQVLSL--------------   54 (178)
Q Consensus         5 ~~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~--~~--------------~~~~~~~~~~~~~~~~--------------   54 (178)
                      .++....+|+|+|+.++|||||+++|+...-.  ..              .....+.........+              
T Consensus        14 ~~~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~   93 (843)
T PLN00116         14 DKKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGER   93 (843)
T ss_pred             hCccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeeccccccccccccc
Confidence            34556789999999999999999999864311  00              0000111111111112              


Q ss_pred             CCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCc
Q 030364           55 NEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLE  128 (178)
Q Consensus        55 ~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~  128 (178)
                      +...+.+.++||||+.+|.......++.+|+.|+|+|+.++-.... ...++.+..   .+.|+++++||+|..
T Consensus        94 ~~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t-~~~~~~~~~---~~~p~i~~iNK~D~~  163 (843)
T PLN00116         94 DGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT-ETVLRQALG---ERIRPVLTVNKMDRC  163 (843)
T ss_pred             CCCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccH-HHHHHHHHH---CCCCEEEEEECCccc
Confidence            2236788999999999998888888999999999999997643332 223333333   478899999999986

>PTZ00416 elongation factor 2; Provisional

Probab=99.46  E-value=5.1e-13  Score=108.57  Aligned_cols=118  Identities=16%  Similarity=0.157  Sum_probs=79.5

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHHhCcC--CCCcc------------CceeeeEE--EEEEEeC--------CeEEEEE
Q 030364            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQF--FDFQE------------STIGAAFF--TQVLSLN--------EVTIKFD   62 (178)
Q Consensus         7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~~--~~~~~------------~~~~~~~~--~~~~~~~--------~~~~~~~   62 (178)
                      .+...+|+++|+.++|||||+++|+...-  .....            ...+.+..  .....+.        +..+.+.
T Consensus        16 ~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~   95 (836)
T PTZ00416         16 PDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLIN   95 (836)
T ss_pred             ccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEE
Confidence            45567999999999999999999986321  10000            00011111  1122222        2357789


Q ss_pred             EEeCCCchhhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCc
Q 030364           63 IWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLE  128 (178)
Q Consensus        63 i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~  128 (178)
                      ++||||+.+|.......++.+|++|+|+|+.++-... ....+..+..   .+.|+++++||+|+.
T Consensus        96 liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~-t~~~~~~~~~---~~~p~iv~iNK~D~~  157 (836)
T PTZ00416         96 LIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQ-TETVLRQALQ---ERIRPVLFINKVDRA  157 (836)
T ss_pred             EEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCcc-HHHHHHHHHH---cCCCEEEEEEChhhh
Confidence            9999999998888888899999999999999753222 2233344433   357899999999986

>cd01882 BMS1 Bms1

Probab=99.46  E-value=3.3e-12  Score=89.15  Aligned_cols=140  Identities=16%  Similarity=0.146  Sum_probs=82.1

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEE
Q 030364            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA   86 (178)
Q Consensus         7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~   86 (178)
                      ..+...|+++|.+|+|||||++.+.+...........+. .   .+ ......++.++|+||.-  .. .....+.+|++
T Consensus        36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i---~i-~~~~~~~i~~vDtPg~~--~~-~l~~ak~aDvV  107 (225)
T cd01882          36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-I---TV-VTGKKRRLTFIECPNDI--NA-MIDIAKVADLV  107 (225)
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-E---EE-EecCCceEEEEeCCchH--HH-HHHHHHhcCEE
Confidence            345678999999999999999999864322111111111 1   11 11234567899999863  22 23346889999


Q ss_pred             EEEEECCCHhHHHHHHHHHHHHHHhCCCCceE-EEEEeCCCCccccccCH---HHH-HHHHHH--cCCeEEEEeCCCCC
Q 030364           87 VVVYDITSMDSFERAKKWVQELQRQGNPNLIM-FLVANKVDLEEKRKVKN---EEG-ELYAQE--NGLSFLETSAKSAH  158 (178)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-ivv~nK~D~~~~~~~~~---~~~-~~~~~~--~~~~~~~~Sa~~~~  158 (178)
                      ++++|++....... ...+..+...   +.|. ++|+||.|+.+......   .+. ..+...  .+.+++.+||+++-
T Consensus       108 llviDa~~~~~~~~-~~i~~~l~~~---g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~  182 (225)
T cd01882         108 LLLIDASFGFEMET-FEFLNILQVH---GFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVHG  182 (225)
T ss_pred             EEEEecCcCCCHHH-HHHHHHHHHc---CCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccCC
Confidence            99999986433222 2233333332   4564 45999999864221111   111 112211  24699999998873

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>PRK07560 elongation factor EF-2; Reviewed

Probab=99.46  E-value=2.6e-12  Score=103.36  Aligned_cols=119  Identities=19%  Similarity=0.185  Sum_probs=78.9

Q ss_pred             CCCceeEEEEEcCCCCCHHHHHHHHHhCcCC--CCcc--------------Cceee--eEEEEEEEeCCeEEEEEEEeCC
Q 030364            6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFF--DFQE--------------STIGA--AFFTQVLSLNEVTIKFDIWDTA   67 (178)
Q Consensus         6 ~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~--~~~~--------------~~~~~--~~~~~~~~~~~~~~~~~i~d~~   67 (178)
                      +.+...+|+++|+.++|||||+.+|+...-.  ....              ...+.  ......+.+++..+.+.++|||
T Consensus        16 ~~~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP   95 (731)
T PRK07560         16 NPEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTP   95 (731)
T ss_pred             chhcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCC
Confidence            3455678999999999999999999863211  0000              00000  1111122334456788999999


Q ss_pred             CchhhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCc
Q 030364           68 GQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLE  128 (178)
Q Consensus        68 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~  128 (178)
                      |+.+|.......+..+|++++|+|+...-... ....+......   +.|.++++||+|..
T Consensus        96 G~~df~~~~~~~l~~~D~avlVvda~~g~~~~-t~~~~~~~~~~---~~~~iv~iNK~D~~  152 (731)
T PRK07560         96 GHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQ-TETVLRQALRE---RVKPVLFINKVDRL  152 (731)
T ss_pred             CccChHHHHHHHHHhcCEEEEEEECCCCCCcc-HHHHHHHHHHc---CCCeEEEEECchhh
Confidence            99998888888899999999999998753222 22333333332   45779999999975

>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins

Probab=99.44  E-value=9.8e-12  Score=94.49  Aligned_cols=164  Identities=20%  Similarity=0.283  Sum_probs=112.4

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeC--CeEEEEEEEeCCCchhhhccchhhhcCC--
Q 030364            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLN--EVTIKFDIWDTAGQERYHSLAPMYYRGA--   83 (178)
Q Consensus         8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~d~~g~~~~~~~~~~~~~~~--   83 (178)
                      ...-.|+|+|..++|||||+.+|.+.+   ...++.+..|....+.-+  +...++.+|...|...+..+....+...  
T Consensus        23 ~~~k~vlvlG~~~~GKttli~~L~~~e---~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l   99 (472)
T PF05783_consen   23 PSEKSVLVLGDKGSGKTTLIARLQGIE---DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENL   99 (472)
T ss_pred             CCCceEEEEeCCCCchHHHHHHhhccC---CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccc
Confidence            456799999999999999999987644   244556666655544332  2345688999988766666655444432  


Q ss_pred             --cEEEEEEECCCHhH-HHHHHHHHHHHH-------------------------HhC-----C-----------------
Q 030364           84 --AAAVVVYDITSMDS-FERAKKWVQELQ-------------------------RQG-----N-----------------  113 (178)
Q Consensus        84 --d~~i~v~d~~~~~s-~~~~~~~~~~~~-------------------------~~~-----~-----------------  113 (178)
                        -.+++|+|.+.|.. ++.+..|+..+.                         .+.     .                 
T Consensus       100 ~~t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~  179 (472)
T PF05783_consen  100 PNTLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDD  179 (472)
T ss_pred             cceEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCccccccccccccc
Confidence              37899999998854 444555533321                         000     0                 


Q ss_pred             ---------------CCceEEEEEeCCCCccc----cc-------cCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Q 030364          114 ---------------PNLIMFLVANKVDLEEK----RK-------VKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI  167 (178)
Q Consensus       114 ---------------~~~~~ivv~nK~D~~~~----~~-------~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  167 (178)
                                     -++|++||++|+|....    ..       ....-.+.+|..+|+.++.||++...+++.++..|
T Consensus       180 ~~~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi  259 (472)
T PF05783_consen  180 ESVLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYI  259 (472)
T ss_pred             ccccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHH
Confidence                           03789999999997431    11       11123566788899999999999999999999998


Q ss_pred             Hhhcccc
Q 030364          168 GDCTECF  174 (178)
Q Consensus       168 ~~~i~~~  174 (178)
                      ..++-.+
T Consensus       260 ~h~l~~~  266 (472)
T PF05783_consen  260 LHRLYGF  266 (472)
T ss_pred             HHHhccC
Confidence            8877544

The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].

>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.43  E-value=1.3e-12  Score=89.42  Aligned_cols=159  Identities=21%  Similarity=0.274  Sum_probs=104.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhcc---chhhhcCCcEE
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSL---APMYYRGAAAA   86 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~---~~~~~~~~d~~   86 (178)
                      +.+|+++|...+||||+.+.++++..+.+......+.. ...-.+.+.-+.+.+||.||+..+..-   ....++++.++
T Consensus        27 kp~ilLMG~rRsGKsSI~KVVFhkMsPneTlflESTsk-i~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gAL  105 (347)
T KOG3887|consen   27 KPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTSK-ITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGAL  105 (347)
T ss_pred             CceEEEEeecccCcchhhheeeeccCCCceeEeeccCc-ccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeE
Confidence            46799999999999999988887655433222111111 111122334578999999999766542   35668999999


Q ss_pred             EEEEECCCHhHHHHHHHHHHHHHHh--CCCCceEEEEEeCCCCcccc-------ccCHHHHHHHHHH----cCCeEEEEe
Q 030364           87 VVVYDITSMDSFERAKKWVQELQRQ--GNPNLIMFLVANKVDLEEKR-------KVKNEEGELYAQE----NGLSFLETS  153 (178)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~~~~ivv~nK~D~~~~~-------~~~~~~~~~~~~~----~~~~~~~~S  153 (178)
                      ++|+|+.+ +..+.+.++...+.+.  ..++..+-|.++|.|-....       .+.......+++.    ..+.|+.+|
T Consensus       106 ifvIDaQd-dy~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~vsf~LTS  184 (347)
T KOG3887|consen  106 IFVIDAQD-DYMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQVSFYLTS  184 (347)
T ss_pred             EEEEechH-HHHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceEEEEEee
Confidence            99999987 5566666655555442  25888899999999964321       1111122222221    234678888


Q ss_pred             CCCCCCHHHHHHHHHhhc
Q 030364          154 AKSAHNVNELFYEIGDCT  171 (178)
Q Consensus       154 a~~~~~i~~~~~~l~~~i  171 (178)
                      ..+ .++-|+|..++|++
T Consensus       185 IyD-HSIfEAFSkvVQkL  201 (347)
T KOG3887|consen  185 IYD-HSIFEAFSKVVQKL  201 (347)
T ss_pred             ecc-hHHHHHHHHHHHHH
Confidence            877 79999999888865

>PRK09601 GTP-binding protein YchF; Reviewed

Probab=99.43  E-value=1.3e-11  Score=90.72  Aligned_cols=83  Identities=17%  Similarity=0.054  Sum_probs=54.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeE---------------EEEEEEeCCCchhhh--
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVT---------------IKFDIWDTAGQERYH--   73 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~d~~g~~~~~--   73 (178)
                      ++|.++|.||+|||||+|+|++........|.++.+.......+.+..               ..+.+.|+||...-.  
T Consensus         3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~   82 (364)
T PRK09601          3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK   82 (364)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence            789999999999999999999877432222333333333333433321               358899999953211  


Q ss_pred             --c---cchhhhcCCcEEEEEEECC
Q 030364           74 --S---LAPMYYRGAAAAVVVYDIT   93 (178)
Q Consensus        74 --~---~~~~~~~~~d~~i~v~d~~   93 (178)
                        .   ..-..++.+|++++|+|+.
T Consensus        83 g~glg~~fL~~i~~aD~li~VVd~f  107 (364)
T PRK09601         83 GEGLGNQFLANIREVDAIVHVVRCF  107 (364)
T ss_pred             HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence              1   1223467899999999984

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=99.42  E-value=2.1e-12  Score=85.79  Aligned_cols=150  Identities=20%  Similarity=0.193  Sum_probs=87.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEE---------------EEEEe--------------------
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFT---------------QVLSL--------------------   54 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~---------------~~~~~--------------------   54 (178)
                      .++|-|.|++|||||+|+.+++..-...-.......+.+.               ..+..                    
T Consensus        13 ~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t~~Da~~l~~~~g~~i~~v~TG~~CH~da~m~~~ai~~l~~   92 (202)
T COG0378          13 MLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTKEDADRLRKLPGEPIIGVETGKGCHLDASMNLEAIEELVL   92 (202)
T ss_pred             eEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeechhhHHHHHhCCCCeeEEeccCCccCCcHHHHHHHHHHHhh
Confidence            4899999999999999999877532111000111111111               00000                    


Q ss_pred             CCeEEEEEEEeCCCchhhhccchhhhcCCc-EEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccc
Q 030364           55 NEVTIKFDIWDTAGQERYHSLAPMYYRGAA-AAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKV  133 (178)
Q Consensus        55 ~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d-~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~  133 (178)
                      ......+.|++..|.    -..+..+.-.| .-|+|+|++..+--..  +-...+      -..=++|+||.|+......
T Consensus        93 ~~~~~Dll~iEs~GN----L~~~~sp~L~d~~~v~VidvteGe~~P~--K~gP~i------~~aDllVInK~DLa~~v~~  160 (202)
T COG0378          93 DFPDLDLLFIESVGN----LVCPFSPDLGDHLRVVVIDVTEGEDIPR--KGGPGI------FKADLLVINKTDLAPYVGA  160 (202)
T ss_pred             cCCcCCEEEEecCcc----eecccCcchhhceEEEEEECCCCCCCcc--cCCCce------eEeeEEEEehHHhHHHhCc
Confidence            001134556666661    11111222234 7888999987642111  000000      1124899999999887766


Q ss_pred             CHHHHHHHHHHc--CCeEEEEeCCCCCCHHHHHHHHHhhc
Q 030364          134 KNEEGELYAQEN--GLSFLETSAKSAHNVNELFYEIGDCT  171 (178)
Q Consensus       134 ~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~~~~~l~~~i  171 (178)
                      +.+....-++..  +.+++.+|+++|+|++++++|+....
T Consensus       161 dlevm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~~~~  200 (202)
T COG0378         161 DLEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIEPQA  200 (202)
T ss_pred             cHHHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence            666665555554  47999999999999999999998754

>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.42  E-value=1.1e-11  Score=88.94  Aligned_cols=165  Identities=15%  Similarity=0.116  Sum_probs=99.3

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHHhCc----CCCCc---cCceeeeEEEEEEEe-------CCeEEEEEEEeCCCchhh
Q 030364            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQ----FFDFQ---ESTIGAAFFTQVLSL-------NEVTIKFDIWDTAGQERY   72 (178)
Q Consensus         7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~----~~~~~---~~~~~~~~~~~~~~~-------~~~~~~~~i~d~~g~~~~   72 (178)
                      ++..+++.++|+..+|||||.+++..-.    |..+.   +...+.+.-...+..       .+...++.++|+||+...
T Consensus         4 ~p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasL   83 (522)
T KOG0461|consen    4 PPSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASL   83 (522)
T ss_pred             CCceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHH
Confidence            3446999999999999999999987521    22111   111112211111111       456688999999998654


Q ss_pred             hccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccc---CHHHHHHHHHHc----
Q 030364           73 HSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKV---KNEEGELYAQEN----  145 (178)
Q Consensus        73 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~---~~~~~~~~~~~~----  145 (178)
                      -........-.|..++|+|+.....-.....+  .+-+..+  ...+||+||.|...+.+.   .++......+.+    
T Consensus        84 IRtiiggaqiiDlm~lviDv~kG~QtQtAEcL--iig~~~c--~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t~  159 (522)
T KOG0461|consen   84 IRTIIGGAQIIDLMILVIDVQKGKQTQTAECL--IIGELLC--KKLVVVINKIDVLPENQRASKIEKSAKKVRKTLESTG  159 (522)
T ss_pred             HHHHHhhhheeeeeeEEEehhcccccccchhh--hhhhhhc--cceEEEEeccccccchhhhhHHHHHHHHHHHHHHhcC
Confidence            44333344556899999999865332222221  1222222  236888888886432211   111222222221    


Q ss_pred             ---CCeEEEEeCCCC----CCHHHHHHHHHhhccccc
Q 030364          146 ---GLSFLETSAKSA----HNVNELFYEIGDCTECFS  175 (178)
Q Consensus       146 ---~~~~~~~Sa~~~----~~i~~~~~~l~~~i~~~~  175 (178)
                         +.|++++||+.|    +++.++.+.|.+++-...
T Consensus       160 f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P~  196 (522)
T KOG0461|consen  160 FDGNSPIVEVSAADGYFKEEMIQELKEALESRIFEPK  196 (522)
T ss_pred             cCCCCceeEEecCCCccchhHHHHHHHHHHHhhcCCC
Confidence               269999999999    899999999988887654

>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence

Probab=99.37  E-value=4.1e-12  Score=93.46  Aligned_cols=161  Identities=15%  Similarity=0.177  Sum_probs=78.9

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHHhCcCCCC-ccCc--eeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccch-----hh
Q 030364            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDF-QEST--IGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAP-----MY   79 (178)
Q Consensus         8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~-----~~   79 (178)
                      +..++|+|+|.+|+|||||+|+|.+-...+. ..++  ..++.....+..+.. =.+.+||.||.........     .-
T Consensus        33 ~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~-pnv~lWDlPG~gt~~f~~~~Yl~~~~  111 (376)
T PF05049_consen   33 NAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKF-PNVTLWDLPGIGTPNFPPEEYLKEVK  111 (376)
T ss_dssp             H--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS--TTEEEEEE--GGGSS--HHHHHHHTT
T ss_pred             cCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCC-CCCeEEeCCCCCCCCCCHHHHHHHcc
Confidence            3578999999999999999999975322111 1111  111111122222221 1366999999643222222     23


Q ss_pred             hcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCc-------cccccCHHH----HHHHHHH----
Q 030364           80 YRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLE-------EKRKVKNEE----GELYAQE----  144 (178)
Q Consensus        80 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~-------~~~~~~~~~----~~~~~~~----  144 (178)
                      +...|.+|++.+..=.+.   -..+.+.+.+.   ++|+.+|-+|+|..       .++....++    .++.+..    
T Consensus       112 ~~~yD~fiii~s~rf~~n---dv~La~~i~~~---gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k  185 (376)
T PF05049_consen  112 FYRYDFFIIISSERFTEN---DVQLAKEIQRM---GKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQK  185 (376)
T ss_dssp             GGG-SEEEEEESSS--HH---HHHHHHHHHHT---T-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHC
T ss_pred             ccccCEEEEEeCCCCchh---hHHHHHHHHHc---CCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHH
Confidence            566788887766442221   12333555554   78899999999951       111222221    1222221    


Q ss_pred             cC---CeEEEEeCCCC--CCHHHHHHHHHhhccccc
Q 030364          145 NG---LSFLETSAKSA--HNVNELFYEIGDCTECFS  175 (178)
Q Consensus       145 ~~---~~~~~~Sa~~~--~~i~~~~~~l~~~i~~~~  175 (178)
                      .+   -++|.+|+.+-  .++..+.+.|.+.+...+
T Consensus       186 ~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~K  221 (376)
T PF05049_consen  186 AGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAHK  221 (376)
T ss_dssp             TT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GGG
T ss_pred             cCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHHH
Confidence            23   37899998654  568888888888776654

IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.

>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]

Probab=99.37  E-value=7.2e-12  Score=92.33  Aligned_cols=116  Identities=18%  Similarity=0.219  Sum_probs=80.6

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh-CcCCCC-------------------ccCceeeeEEEEEEEeCCeEEEEEEEeCCC
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVK-GQFFDF-------------------QESTIGAAFFTQVLSLNEVTIKFDIWDTAG   68 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~-~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g   68 (178)
                      ++...+|+-+|.+|||||-.+|+- +.....                   .+...+..+....++++...+.+++.||||
T Consensus        11 rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPG   90 (528)
T COG4108          11 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPG   90 (528)
T ss_pred             hhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCC
Confidence            466789999999999999988753 110000                   112223333444444444556778999999


Q ss_pred             chhhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCc
Q 030364           69 QERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLE  128 (178)
Q Consensus        69 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~  128 (178)
                      +++|..-....+..+|..+.|+|+..+---.. .   +.+.-++..+.|++-++||.|..
T Consensus        91 HeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT-~---KLfeVcrlR~iPI~TFiNKlDR~  146 (528)
T COG4108          91 HEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQT-L---KLFEVCRLRDIPIFTFINKLDRE  146 (528)
T ss_pred             ccccchhHHHHHHhhheeeEEEecccCccHHH-H---HHHHHHhhcCCceEEEeeccccc
Confidence            99999999889999999999999996432222 2   22333335699999999999964

>TIGR00750 lao LAO/AO transport system ATPase

Probab=99.36  E-value=8.8e-12  Score=90.63  Aligned_cols=104  Identities=21%  Similarity=0.091  Sum_probs=64.5

Q ss_pred             EEEEEEEeCCCchhhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHH
Q 030364           58 TIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEE  137 (178)
Q Consensus        58 ~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~  137 (178)
                      .+.+.|+||+|.....   ......+|.++++......   +.+..+...+     .+.|.++++||+|+..........
T Consensus       126 g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~~~---~el~~~~~~l-----~~~~~ivv~NK~Dl~~~~~~~~~~  194 (300)
T TIGR00750       126 GYDVIIVETVGVGQSE---VDIANMADTFVVVTIPGTG---DDLQGIKAGL-----MEIADIYVVNKADGEGATNVTIAR  194 (300)
T ss_pred             CCCEEEEeCCCCchhh---hHHHHhhceEEEEecCCcc---HHHHHHHHHH-----hhhccEEEEEcccccchhHHHHHH
Confidence            4678899999854211   2346677888887544433   3333333333     245679999999987543211000


Q ss_pred             ------HHHHHH---HcCCeEEEEeCCCCCCHHHHHHHHHhhcc
Q 030364          138 ------GELYAQ---ENGLSFLETSAKSAHNVNELFYEIGDCTE  172 (178)
Q Consensus       138 ------~~~~~~---~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~  172 (178)
                            ...+..   .+..+++.+||+++.|+++++++|.+...
T Consensus       195 ~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~  238 (300)
T TIGR00750       195 LMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT  238 (300)
T ss_pred             HHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence                  011111   12346999999999999999999988654

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.36  E-value=2e-11  Score=88.82  Aligned_cols=127  Identities=19%  Similarity=0.240  Sum_probs=85.5

Q ss_pred             eEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEEEECCCHhH----------HHHHHHHHHHHHHhC-CC
Q 030364           46 AFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDS----------FERAKKWVQELQRQG-NP  114 (178)
Q Consensus        46 ~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s----------~~~~~~~~~~~~~~~-~~  114 (178)
                      ......+.+++  ..+.++|.+|+..-+.-|.+++.+++++|||+++++-+.          +.+...+++.+-... ..
T Consensus       184 GI~e~~F~~k~--~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~  261 (354)
T KOG0082|consen  184 GIVEVEFTIKG--LKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFA  261 (354)
T ss_pred             CeeEEEEEeCC--CceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccc
Confidence            33444455555  667799999999989999999999999999999995322          222233444444433 36


Q ss_pred             CceEEEEEeCCCCccc--------------cc-cCHHHHHHHHH-----H-----cCCeEEEEeCCCCCCHHHHHHHHHh
Q 030364          115 NLIMFLVANKVDLEEK--------------RK-VKNEEGELYAQ-----E-----NGLSFLETSAKSAHNVNELFYEIGD  169 (178)
Q Consensus       115 ~~~~ivv~nK~D~~~~--------------~~-~~~~~~~~~~~-----~-----~~~~~~~~Sa~~~~~i~~~~~~l~~  169 (178)
                      +.++++++||.|+...              .. -..+++..+..     .     ..+-+..+.|.+..+|+.+|..+.+
T Consensus       262 ~tsiiLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d  341 (354)
T KOG0082|consen  262 NTSIILFLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTD  341 (354)
T ss_pred             cCcEEEEeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHH
Confidence            8999999999998431              11 12223322221     1     1345677899999999999999888


Q ss_pred             hcccc
Q 030364          170 CTECF  174 (178)
Q Consensus       170 ~i~~~  174 (178)
                      .|-+.
T Consensus       342 ~Ii~~  346 (354)
T KOG0082|consen  342 TIIQN  346 (354)
T ss_pred             HHHHH
Confidence            76544

>TIGR02836 spore_IV_A stage IV sporulation protein A

Probab=99.34  E-value=9.5e-11  Score=86.72  Aligned_cols=154  Identities=15%  Similarity=0.182  Sum_probs=93.3

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCcCCCC--------------ccCcee---eeEEEE-------E-EEeCCeEEEEEE
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDF--------------QESTIG---AAFFTQ-------V-LSLNEVTIKFDI   63 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~~~--------------~~~~~~---~~~~~~-------~-~~~~~~~~~~~i   63 (178)
                      -.+.|.|+|+.++|||||+|+|.+.-..+.              ..+..|   ++..++       . ...++....+.+
T Consensus        16 G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vrl   95 (492)
T TIGR02836        16 GDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRL   95 (492)
T ss_pred             CcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEE
Confidence            368899999999999999999998722111              122233   221111       1 222455677889


Q ss_pred             EeCCCchhhhc-------c----------------------chhhhc-CCcEEEEEE-ECC----CHhH-HHHHHHHHHH
Q 030364           64 WDTAGQERYHS-------L----------------------APMYYR-GAAAAVVVY-DIT----SMDS-FERAKKWVQE  107 (178)
Q Consensus        64 ~d~~g~~~~~~-------~----------------------~~~~~~-~~d~~i~v~-d~~----~~~s-~~~~~~~~~~  107 (178)
                      +||+|...-..       .                      ....+. .++..++|. |.+    .++. .+.-.+++..
T Consensus        96 IDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~e  175 (492)
T TIGR02836        96 VDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEE  175 (492)
T ss_pred             EECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHH
Confidence            99999421111       0                      223344 788888888 764    1222 2223456666


Q ss_pred             HHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCC--CCCHHHHHHHH
Q 030364          108 LQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKS--AHNVNELFYEI  167 (178)
Q Consensus       108 ~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~--~~~i~~~~~~l  167 (178)
                      +...   ++|+++++|+.|...+.  .......+...++++++.+|+..  .+.+..+++.+
T Consensus       176 Lk~~---~kPfiivlN~~dp~~~e--t~~l~~~l~eky~vpvl~v~c~~l~~~DI~~il~~v  232 (492)
T TIGR02836       176 LKEL---NKPFIILLNSTHPYHPE--TEALRQELEEKYDVPVLAMDVESMRESDILSVLEEV  232 (492)
T ss_pred             HHhc---CCCEEEEEECcCCCCch--hHHHHHHHHHHhCCceEEEEHHHcCHHHHHHHHHHH
Confidence            6654   89999999999943222  23334455666889988888744  34555555543

A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.

>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]

Probab=99.34  E-value=3.8e-12  Score=98.96  Aligned_cols=157  Identities=23%  Similarity=0.227  Sum_probs=101.2

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCcee----eeEEEEE--------EEeCCe-E---EEEEEEeCCCchhh
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIG----AAFFTQV--------LSLNEV-T---IKFDIWDTAGQERY   72 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~----~~~~~~~--------~~~~~~-~---~~~~i~d~~g~~~~   72 (178)
                      +..-|+|+|+..+|||-|+..+-+..+........+    .++.+..        +.-++. .   =-+.++||||++.|
T Consensus       474 RSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsF  553 (1064)
T KOG1144|consen  474 RSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESF  553 (1064)
T ss_pred             CCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhh
Confidence            456789999999999999999877444322222211    1221111        000111 0   12568999999999


Q ss_pred             hccchhhhcCCcEEEEEEECCCH---hHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccc-----------------
Q 030364           73 HSLAPMYYRGAAAAVVVYDITSM---DSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRK-----------------  132 (178)
Q Consensus        73 ~~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~-----------------  132 (178)
                      ..++......||..|+|+|+.++   +..+.+    +.++   ..+.|+||++||.|..-.+.                 
T Consensus       554 tnlRsrgsslC~~aIlvvdImhGlepqtiESi----~lLR---~rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~  626 (1064)
T KOG1144|consen  554 TNLRSRGSSLCDLAILVVDIMHGLEPQTIESI----NLLR---MRKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKD  626 (1064)
T ss_pred             hhhhhccccccceEEEEeehhccCCcchhHHH----HHHH---hcCCCeEEeehhhhhhcccccCCCchHHHHHHHhhHH
Confidence            99999999999999999999864   333222    3333   35899999999999642111                 


Q ss_pred             c-------CHHHHHHHHHH-cC-------------CeEEEEeCCCCCCHHHHHHHHHhhcc
Q 030364          133 V-------KNEEGELYAQE-NG-------------LSFLETSAKSAHNVNELFYEIGDCTE  172 (178)
Q Consensus       133 ~-------~~~~~~~~~~~-~~-------------~~~~~~Sa~~~~~i~~~~~~l~~~i~  172 (178)
                      +       ......+|+.. ++             +.+++|||.+|+||.+++.+|++.-+
T Consensus       627 v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQ  687 (1064)
T KOG1144|consen  627 VQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQ  687 (1064)
T ss_pred             HHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHH
Confidence            0       00111222211 11             36789999999999999999998654

>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

Probab=99.32  E-value=2e-11  Score=96.65  Aligned_cols=125  Identities=20%  Similarity=0.137  Sum_probs=88.3

Q ss_pred             CcccCCCCceeEEEEEcCCCCCHHHHHHHHHhCcCCC----C------------ccCceeeeEEEEEEEeCCe-EEEEEE
Q 030364            1 MARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFD----F------------QESTIGAAFFTQVLSLNEV-TIKFDI   63 (178)
Q Consensus         1 m~~~~~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~----~------------~~~~~~~~~~~~~~~~~~~-~~~~~i   63 (178)
                      |.+........+|.++|+-.+|||||..+++...-.-    .            .+...+.+........... .+.+++
T Consensus         1 ~~~~~~~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNl   80 (697)
T COG0480           1 MARLMPLERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINL   80 (697)
T ss_pred             CCcccccccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEE
Confidence            3444446678899999999999999999987632100    0            1122333444444444444 588999


Q ss_pred             EeCCCchhhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcc
Q 030364           64 WDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEE  129 (178)
Q Consensus        64 ~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~  129 (178)
                      +||||+-+|.......++-+|+.++|+|+...-.... ...++...+   .++|.++++||+|...
T Consensus        81 IDTPGHVDFt~EV~rslrvlDgavvVvdaveGV~~QT-Etv~rqa~~---~~vp~i~fiNKmDR~~  142 (697)
T COG0480          81 IDTPGHVDFTIEVERSLRVLDGAVVVVDAVEGVEPQT-ETVWRQADK---YGVPRILFVNKMDRLG  142 (697)
T ss_pred             eCCCCccccHHHHHHHHHhhcceEEEEECCCCeeecH-HHHHHHHhh---cCCCeEEEEECccccc
Confidence            9999999999999999999999999999997543332 233344433   4789999999999754

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=99.30  E-value=4.6e-11  Score=79.76  Aligned_cols=62  Identities=19%  Similarity=0.169  Sum_probs=41.2

Q ss_pred             EEEEeCCCchh----hhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCC
Q 030364           61 FDIWDTAGQER----YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKV  125 (178)
Q Consensus        61 ~~i~d~~g~~~----~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~  125 (178)
                      +.|+|+||...    .......++..+|++++|.+++....-.....+.+.....   ...+++|.||.
T Consensus       103 ~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~---~~~~i~V~nk~  168 (168)
T PF00350_consen  103 LTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPD---KSRTIFVLNKA  168 (168)
T ss_dssp             EEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTT---CSSEEEEEE-G
T ss_pred             eEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCC---CCeEEEEEcCC
Confidence            56999999743    2245677889999999999999855444444443333332   33488888884

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=99.30  E-value=2.3e-12  Score=89.63  Aligned_cols=153  Identities=18%  Similarity=0.188  Sum_probs=87.0

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCcC-----------CCCccCcee----------------eeEEEEEEEe-------
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVKGQF-----------FDFQESTIG----------------AAFFTQVLSL-------   54 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~~~~-----------~~~~~~~~~----------------~~~~~~~~~~-------   54 (178)
                      +.+.|.+.|+||+|||||++.|...-.           .+ .+|.++                ...+..-...       
T Consensus        28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDP-SSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGl  106 (266)
T PF03308_consen   28 RAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDP-SSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGL  106 (266)
T ss_dssp             -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-G-GGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHH
T ss_pred             CceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECC-CCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCc
Confidence            467999999999999999999875110           00 000000                1112222111       


Q ss_pred             -----------CCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEe
Q 030364           55 -----------NEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVAN  123 (178)
Q Consensus        55 -----------~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~n  123 (178)
                                 +...+.+.|++|.|-....   .....-+|.+++|....-.+..+.++.-+-++.        =++|+|
T Consensus       107 s~~t~~~v~ll~aaG~D~IiiETVGvGQsE---~~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEia--------Di~vVN  175 (266)
T PF03308_consen  107 SRATRDAVRLLDAAGFDVIIIETVGVGQSE---VDIADMADTVVLVLVPGLGDEIQAIKAGIMEIA--------DIFVVN  175 (266)
T ss_dssp             HHHHHHHHHHHHHTT-SEEEEEEESSSTHH---HHHHTTSSEEEEEEESSTCCCCCTB-TTHHHH---------SEEEEE
T ss_pred             cHhHHHHHHHHHHcCCCEEEEeCCCCCccH---HHHHHhcCeEEEEecCCCccHHHHHhhhhhhhc--------cEEEEe
Confidence                       1123566788887643222   223466899999999887666555444333332        288999


Q ss_pred             CCCCccccccCHHHHHHHH--H----HcCCeEEEEeCCCCCCHHHHHHHHHhhccc
Q 030364          124 KVDLEEKRKVKNEEGELYA--Q----ENGLSFLETSAKSAHNVNELFYEIGDCTEC  173 (178)
Q Consensus       124 K~D~~~~~~~~~~~~~~~~--~----~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~~  173 (178)
                      |+|.+.......+....+.  .    .+..|++.|||.++.|+++++++|.+....
T Consensus       176 KaD~~gA~~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~~  231 (266)
T PF03308_consen  176 KADRPGADRTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHRDY  231 (266)
T ss_dssp             --SHHHHHHHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHHHH
T ss_pred             CCChHHHHHHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence            9997654433222222221  1    123599999999999999999998875543

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>KOG0410 consensus Predicted GTP binding protein [General function prediction only]

Probab=99.29  E-value=6e-12  Score=89.52  Aligned_cols=152  Identities=20%  Similarity=0.179  Sum_probs=99.7

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCch---------hhhccchhh
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE---------RYHSLAPMY   79 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~---------~~~~~~~~~   79 (178)
                      ...-|.|+|..|+|||||++.|+.....+...-..+.+........+.. ..+.+.||.|.-         .|+. .-.-
T Consensus       177 s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg-~~vlltDTvGFisdLP~~LvaAF~A-TLee  254 (410)
T KOG0410|consen  177 SSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSG-NFVLLTDTVGFISDLPIQLVAAFQA-TLEE  254 (410)
T ss_pred             CCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCC-cEEEEeechhhhhhCcHHHHHHHHH-HHHH
Confidence            3557999999999999999999965554433333333443444444443 245688999841         1111 1223


Q ss_pred             hcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCce----EEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCC
Q 030364           80 YRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLI----MFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAK  155 (178)
Q Consensus        80 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~----~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  155 (178)
                      ...+|.++.|.|+++|+.-......+..+.....+..|    ++=|-||.|..... ...+       .++  .+.+||+
T Consensus       255 VaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~-~e~E-------~n~--~v~isal  324 (410)
T KOG0410|consen  255 VAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDE-VEEE-------KNL--DVGISAL  324 (410)
T ss_pred             HhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhcccccccccc-Cccc-------cCC--ccccccc
Confidence            56799999999999998777766666667665444444    34456788864322 1111       122  5789999


Q ss_pred             CCCCHHHHHHHHHhhcc
Q 030364          156 SAHNVNELFYEIGDCTE  172 (178)
Q Consensus       156 ~~~~i~~~~~~l~~~i~  172 (178)
                      +|+|++++.+++-..+.
T Consensus       325 tgdgl~el~~a~~~kv~  341 (410)
T KOG0410|consen  325 TGDGLEELLKAEETKVA  341 (410)
T ss_pred             cCccHHHHHHHHHHHhh
Confidence            99999999998766543

>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.29  E-value=4.7e-11  Score=88.22  Aligned_cols=158  Identities=18%  Similarity=0.126  Sum_probs=105.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCcCCCC-ccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEE
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVKGQFFDF-QESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVV   89 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v   89 (178)
                      +.|.-.|+-.-|||||+..+.+...... .....+.+........+.....+.|+|.||++++-......+...|..++|
T Consensus         1 mii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alLv   80 (447)
T COG3276           1 MIIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALLV   80 (447)
T ss_pred             CeEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEEE
Confidence            3577889999999999999987654321 122333444444444444455888999999998888777778899999999


Q ss_pred             EECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHH---HcCCeEEEEeCCCCCCHHHHHHH
Q 030364           90 YDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQ---ENGLSFLETSAKSAHNVNELFYE  166 (178)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~---~~~~~~~~~Sa~~~~~i~~~~~~  166 (178)
                      ++.++.-..... +.+..+....  ....++|+||+|..+...+... ..+...   ..+.+++.+|+.+|.||+++.+.
T Consensus        81 V~~deGl~~qtg-EhL~iLdllg--i~~giivltk~D~~d~~r~e~~-i~~Il~~l~l~~~~i~~~s~~~g~GI~~Lk~~  156 (447)
T COG3276          81 VAADEGLMAQTG-EHLLILDLLG--IKNGIIVLTKADRVDEARIEQK-IKQILADLSLANAKIFKTSAKTGRGIEELKNE  156 (447)
T ss_pred             EeCccCcchhhH-HHHHHHHhcC--CCceEEEEeccccccHHHHHHH-HHHHHhhcccccccccccccccCCCHHHHHHH
Confidence            999754322221 1222222221  2235889999998764432222 222222   23468899999999999999999


Q ss_pred             HHhhcc
Q 030364          167 IGDCTE  172 (178)
Q Consensus       167 l~~~i~  172 (178)
                      |.+..+
T Consensus       157 l~~L~~  162 (447)
T COG3276         157 LIDLLE  162 (447)
T ss_pred             HHHhhh
Confidence            998773

>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []

Probab=99.27  E-value=1.3e-10  Score=83.41  Aligned_cols=139  Identities=17%  Similarity=0.211  Sum_probs=74.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCcCCCCc----------cCceeeeEEEEEEEeCCeEEEEEEEeCCCchh--------
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQ----------ESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER--------   71 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~--------   71 (178)
                      .++|+|+|.+|+|||||+|.|++.......          ..+...........-++..+.+.++||||...        
T Consensus         4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~   83 (281)
T PF00735_consen    4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW   83 (281)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence            689999999999999999999986543321          12222333334445577889999999999321        


Q ss_pred             ----------hhcc-------chhhh--cCCcEEEEEEECCCHh-HHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccc
Q 030364           72 ----------YHSL-------APMYY--RGAAAAVVVYDITSMD-SFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR  131 (178)
Q Consensus        72 ----------~~~~-------~~~~~--~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~  131 (178)
                                |...       ....+  ...|+++|+++.+... .-..+ ...+.+    ...+++|-|+.|+|...+.
T Consensus        84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di-~~mk~L----s~~vNvIPvIaKaD~lt~~  158 (281)
T PF00735_consen   84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDI-EFMKRL----SKRVNVIPVIAKADTLTPE  158 (281)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHH-HHHHHH----TTTSEEEEEESTGGGS-HH
T ss_pred             HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHH-HHHHHh----cccccEEeEEecccccCHH
Confidence                      1100       00001  2357999999987521 11112 122333    3467899999999986544


Q ss_pred             ccCH--HHHHHHHHHcCCeEEEEe
Q 030364          132 KVKN--EEGELYAQENGLSFLETS  153 (178)
Q Consensus       132 ~~~~--~~~~~~~~~~~~~~~~~S  153 (178)
                      +...  .....-.+.++++++...
T Consensus       159 el~~~k~~i~~~l~~~~I~~f~f~  182 (281)
T PF00735_consen  159 ELQAFKQRIREDLEENNIKIFDFP  182 (281)
T ss_dssp             HHHHHHHHHHHHHHHTT--S----
T ss_pred             HHHHHHHHHHHHHHHcCceeeccc
Confidence            3322  222333445677665543

Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.

>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]

Probab=99.26  E-value=7e-10  Score=76.69  Aligned_cols=87  Identities=16%  Similarity=0.151  Sum_probs=61.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhh-------ccchhhhcC
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYH-------SLAPMYYRG   82 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~-------~~~~~~~~~   82 (178)
                      .-+|+++|-|.+|||||+..++.-.........++.+..+..+.+++..  +++.|.||.-.-.       .......+.
T Consensus        62 daRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~ga~--IQllDLPGIieGAsqgkGRGRQviavArt  139 (364)
T KOG1486|consen   62 DARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNGAN--IQLLDLPGIIEGASQGKGRGRQVIAVART  139 (364)
T ss_pred             CeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecCce--EEEecCcccccccccCCCCCceEEEEeec
Confidence            4589999999999999999988654433333344455666677777754  5699999953221       123445688


Q ss_pred             CcEEEEEEECCCHhHH
Q 030364           83 AAAAVVVYDITSMDSF   98 (178)
Q Consensus        83 ~d~~i~v~d~~~~~s~   98 (178)
                      +|.++.|.|++..+.-
T Consensus       140 aDlilMvLDatk~e~q  155 (364)
T KOG1486|consen  140 ADLILMVLDATKSEDQ  155 (364)
T ss_pred             ccEEEEEecCCcchhH
Confidence            9999999999965543

>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]

Probab=99.26  E-value=1.5e-10  Score=81.51  Aligned_cols=164  Identities=16%  Similarity=0.203  Sum_probs=105.5

Q ss_pred             CCCCceeEEEEEcCCCCCHHHHHHHHHhC---c-------C---C-CCccCceeeeEEEEEEEeCCeEEEEEEEeCCCch
Q 030364            5 SNKNIQVKLVLLGDMGTGKTSLVLRFVKG---Q-------F---F-DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE   70 (178)
Q Consensus         5 ~~~~~~~~i~v~G~~~~GKStl~~~l~~~---~-------~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~   70 (178)
                      ....+.++|..+|+..-|||||..+++.-   .       +   . ...+...+.+.......++-....+...|+||+.
T Consensus         7 ~r~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHa   86 (394)
T COG0050           7 ERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHA   86 (394)
T ss_pred             cCCCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChH
Confidence            34467999999999999999999887641   1       0   0 1122334455555566665555566799999999


Q ss_pred             hhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCce-EEEEEeCCCCcccccc---CHHHHHHHHHHcC
Q 030364           71 RYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLI-MFLVANKVDLEEKRKV---KNEEGELYAQENG  146 (178)
Q Consensus        71 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-~ivv~nK~D~~~~~~~---~~~~~~~~~~~~~  146 (178)
                      +|-.....-..++|+.|+|+++.+..- .+.+..+...++.   +.| +++++||+|+.+..+.   ...+...+...++
T Consensus        87 DYvKNMItgAaqmDgAILVVsA~dGpm-PqTrEHiLlarqv---Gvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y~  162 (394)
T COG0050          87 DYVKNMITGAAQMDGAILVVAATDGPM-PQTREHILLARQV---GVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEYG  162 (394)
T ss_pred             HHHHHHhhhHHhcCccEEEEEcCCCCC-Ccchhhhhhhhhc---CCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHcC
Confidence            998877777788999999999998432 2222222222332   454 5666899999764432   2345566666666


Q ss_pred             C-----eEEEEeCCCC-C-------CHHHHHHHHHhhcc
Q 030364          147 L-----SFLETSAKSA-H-------NVNELFYEIGDCTE  172 (178)
Q Consensus       147 ~-----~~~~~Sa~~~-~-------~i~~~~~~l~~~i~  172 (178)
                      +     |++.-||+.- +       .|.++++++-..+.
T Consensus       163 f~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip  201 (394)
T COG0050         163 FPGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIP  201 (394)
T ss_pred             CCCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCC
Confidence            4     6777776443 2       24555555555544

>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]

Probab=99.26  E-value=4e-11  Score=92.46  Aligned_cols=119  Identities=21%  Similarity=0.241  Sum_probs=85.9

Q ss_pred             CCCCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCce-----------------eeeEEEEE---EEeCCeEEEEEEE
Q 030364            5 SNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTI-----------------GAAFFTQV---LSLNEVTIKFDIW   64 (178)
Q Consensus         5 ~~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~-----------------~~~~~~~~---~~~~~~~~~~~i~   64 (178)
                      ..+....+|.++|+-+.|||+|+..|.....+.....+.                 +.......   -..+++.+-+++.
T Consensus       123 ~~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nil  202 (971)
T KOG0468|consen  123 DNPERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNIL  202 (971)
T ss_pred             cCcceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeee
Confidence            455668899999999999999999998765433211111                 11111111   1236678889999


Q ss_pred             eCCCchhhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCC
Q 030364           65 DTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDL  127 (178)
Q Consensus        65 d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~  127 (178)
                      ||||+.+|.......++.+|++++++|+.+.-.+.. .+.++...   ..+.|+++|+||.|.
T Consensus       203 DTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlnt-Er~ikhai---q~~~~i~vviNKiDR  261 (971)
T KOG0468|consen  203 DTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNT-ERIIKHAI---QNRLPIVVVINKVDR  261 (971)
T ss_pred             cCCCcccchHHHHHHhhhcceEEEEEEcccCceeeH-HHHHHHHH---hccCcEEEEEehhHH
Confidence            999999999999999999999999999998765544 22222222   357899999999995

>smart00053 DYNc Dynamin, GTPase

Probab=99.23  E-value=2.1e-10  Score=80.31  Aligned_cols=68  Identities=15%  Similarity=0.154  Sum_probs=42.6

Q ss_pred             EEEEEEeCCCchh-------------hhccchhhhc-CCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeC
Q 030364           59 IKFDIWDTAGQER-------------YHSLAPMYYR-GAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANK  124 (178)
Q Consensus        59 ~~~~i~d~~g~~~-------------~~~~~~~~~~-~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK  124 (178)
                      ..+.++|+||...             ...+...|++ ..+++++|+|+...-.-.....+.+.+..   ...|+++|+||
T Consensus       125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~---~~~rti~ViTK  201 (240)
T smart00053      125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDP---QGERTIGVITK  201 (240)
T ss_pred             CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHH---cCCcEEEEEEC
Confidence            4577999999732             1123455667 45689999988753222222233333332   46789999999


Q ss_pred             CCCcc
Q 030364          125 VDLEE  129 (178)
Q Consensus       125 ~D~~~  129 (178)
                      .|..+
T Consensus       202 ~D~~~  206 (240)
T smart00053      202 LDLMD  206 (240)
T ss_pred             CCCCC
Confidence            99865

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=99.23  E-value=1.8e-10  Score=81.45  Aligned_cols=106  Identities=21%  Similarity=0.130  Sum_probs=66.6

Q ss_pred             eEEEEEEEeCCCchhhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHH
Q 030364           57 VTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNE  136 (178)
Q Consensus        57 ~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~  136 (178)
                      ..+.+.|++|.|-.....   ....-+|.++++.=..-.+...-++.-+-++.        =++|+||.|.........+
T Consensus       142 aG~DvIIVETVGvGQsev---~I~~~aDt~~~v~~pg~GD~~Q~iK~GimEia--------Di~vINKaD~~~A~~a~r~  210 (323)
T COG1703         142 AGYDVIIVETVGVGQSEV---DIANMADTFLVVMIPGAGDDLQGIKAGIMEIA--------DIIVINKADRKGAEKAARE  210 (323)
T ss_pred             cCCCEEEEEecCCCcchh---HHhhhcceEEEEecCCCCcHHHHHHhhhhhhh--------heeeEeccChhhHHHHHHH
Confidence            446677888887543322   23456888888887776665555543333332        3889999996543221111


Q ss_pred             HH--HHHH----H--HcCCeEEEEeCCCCCCHHHHHHHHHhhccc
Q 030364          137 EG--ELYA----Q--ENGLSFLETSAKSAHNVNELFYEIGDCTEC  173 (178)
Q Consensus       137 ~~--~~~~----~--~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~~  173 (178)
                      ..  ..+.    .  .+.-+++.+||.+|+|++++++++.+..+.
T Consensus       211 l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~  255 (323)
T COG1703         211 LRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKF  255 (323)
T ss_pred             HHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHH
Confidence            11  1111    1  133489999999999999999999886554

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=99.20  E-value=7.5e-11  Score=84.17  Aligned_cols=56  Identities=20%  Similarity=0.175  Sum_probs=39.3

Q ss_pred             ceEEEEEeCCCCccccccCHHHHHHHHHH--cCCeEEEEeCCCCCCHHHHHHHHHhhc
Q 030364          116 LIMFLVANKVDLEEKRKVKNEEGELYAQE--NGLSFLETSAKSAHNVNELFYEIGDCT  171 (178)
Q Consensus       116 ~~~ivv~nK~D~~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~~i~~~~~~l~~~i  171 (178)
                      .+-++|+||+|+........+......+.  ...+++.+|+++|+|++++.+||.++.
T Consensus       231 ~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~~  288 (290)
T PRK10463        231 AASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQR  288 (290)
T ss_pred             cCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence            34599999999965322112222222332  357999999999999999999998754

>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains

Probab=99.19  E-value=4.5e-10  Score=87.55  Aligned_cols=120  Identities=11%  Similarity=0.113  Sum_probs=69.7

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccC-ceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhc----------cc
Q 030364            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQES-TIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHS----------LA   76 (178)
Q Consensus         8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~----------~~   76 (178)
                      +..++|+++|.+|+||||++|.+++......... ..++.........++  ..+.++||||......          ..
T Consensus       116 dfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG--~~L~VIDTPGL~dt~~dq~~neeILk~I  193 (763)
T TIGR00993       116 DFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQG--VKIRVIDTPGLKSSASDQSKNEKILSSV  193 (763)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECC--ceEEEEECCCCCccccchHHHHHHHHHH
Confidence            3468999999999999999999998764332221 111122222223344  5678999999653211          11


Q ss_pred             hhhhc--CCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCC--CceEEEEEeCCCCcc
Q 030364           77 PMYYR--GAAAAVVVYDITSMDSFERAKKWVQELQRQGNP--NLIMFLVANKVDLEE  129 (178)
Q Consensus        77 ~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~~ivv~nK~D~~~  129 (178)
                      ..++.  .+|++++|..+........-...++.+.....+  -...|||.|+.|...
T Consensus       194 k~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp  250 (763)
T TIGR00993       194 KKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAP  250 (763)
T ss_pred             HHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence            12333  479999998876322211112334444433221  133788899999754

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=99.17  E-value=6.4e-11  Score=89.55  Aligned_cols=160  Identities=22%  Similarity=0.338  Sum_probs=119.4

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEE
Q 030364            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (178)
Q Consensus         8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i   87 (178)
                      -+++|+.|+|..++|||+|+.+++.+.+.....+..  ..+.+.+..++....+.+.|-+|..     ...|-..+|++|
T Consensus        28 ipelk~givg~~~sgktalvhr~ltgty~~~e~~e~--~~~kkE~vv~gqs~lLlirdeg~~~-----~aQft~wvdavI  100 (749)
T KOG0705|consen   28 IPELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEG--GRFKKEVVVDGQSHLLLIRDEGGHP-----DAQFCQWVDAVV  100 (749)
T ss_pred             cchhheeeeecccCCceeeeeeeccceeccccCCcC--ccceeeEEeeccceEeeeecccCCc-----hhhhhhhccceE
Confidence            468999999999999999999998888765333322  3446666677777778888888742     345667899999


Q ss_pred             EEEECCCHhHHHHHHHHHHHHHHhCC-CCceEEEEEeCCCCc--cccccCHHHHHHH-HHHcCCeEEEEeCCCCCCHHHH
Q 030364           88 VVYDITSMDSFERAKKWVQELQRQGN-PNLIMFLVANKVDLE--EKRKVKNEEGELY-AQENGLSFLETSAKSAHNVNEL  163 (178)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~ivv~nK~D~~--~~~~~~~~~~~~~-~~~~~~~~~~~Sa~~~~~i~~~  163 (178)
                      |||...+.++++.++.+...+..... ...|.++++++.-..  .++.+...+...+ ++...+.+|++++.+|.+++..
T Consensus       101 fvf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et~atyGlnv~rv  180 (749)
T KOG0705|consen  101 FVFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYETCATYGLNVERV  180 (749)
T ss_pred             EEEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeecchhhhhhHHHH
Confidence            99999999999999888888766543 567777777765442  2333444444444 4445589999999999999999


Q ss_pred             HHHHHhhcccc
Q 030364          164 FYEIGDCTECF  174 (178)
Q Consensus       164 ~~~l~~~i~~~  174 (178)
                      |+.+.+++-..
T Consensus       181 f~~~~~k~i~~  191 (749)
T KOG0705|consen  181 FQEVAQKIVQL  191 (749)
T ss_pred             HHHHHHHHHHH
Confidence            99988876544

>cd01900 YchF YchF subfamily

Probab=99.15  E-value=1.3e-10  Score=82.83  Aligned_cols=81  Identities=14%  Similarity=0.030  Sum_probs=53.3

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCe---------------EEEEEEEeCCCchhhh----
Q 030364           13 LVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEV---------------TIKFDIWDTAGQERYH----   73 (178)
Q Consensus        13 i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~d~~g~~~~~----   73 (178)
                      |.++|.||+|||||+|+|++........|.++.+.......+.+.               ...+.++|+||...-.    
T Consensus         1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~   80 (274)
T cd01900           1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE   80 (274)
T ss_pred             CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence            578999999999999999987764333344443444444444432               2358899999953211    


Q ss_pred             c---cchhhhcCCcEEEEEEECC
Q 030364           74 S---LAPMYYRGAAAAVVVYDIT   93 (178)
Q Consensus        74 ~---~~~~~~~~~d~~i~v~d~~   93 (178)
                      .   ..-..++.+|++++|+|..
T Consensus        81 glg~~fL~~i~~~D~li~VV~~f  103 (274)
T cd01900          81 GLGNKFLSHIREVDAIAHVVRCF  103 (274)
T ss_pred             HHHHHHHHHHHhCCEEEEEEeCc
Confidence            1   1223367899999999874

YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.

>cd01859 MJ1464 MJ1464

Probab=99.13  E-value=1.9e-10  Score=75.91  Aligned_cols=94  Identities=18%  Similarity=0.181  Sum_probs=63.6

Q ss_pred             hccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEE
Q 030364           73 HSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLET  152 (178)
Q Consensus        73 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (178)
                      +.+..+..+++|++++|+|++++..... ..+...+.   ..+.|+++|+||+|+......  .....+....+.+++.+
T Consensus         3 ~~~~~~i~~~aD~vl~V~D~~~~~~~~~-~~l~~~~~---~~~~p~iiv~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~i   76 (156)
T cd01859           3 KRLVRRIIKESDVVLEVLDARDPELTRS-RKLERYVL---ELGKKLLIVLNKADLVPKEVL--EKWKSIKESEGIPVVYV   76 (156)
T ss_pred             HHHHHHHHhhCCEEEEEeeCCCCcccCC-HHHHHHHH---hCCCcEEEEEEhHHhCCHHHH--HHHHHHHHhCCCcEEEE
Confidence            3456677888999999999987543222 11212222   236899999999998542221  11112334456789999


Q ss_pred             eCCCCCCHHHHHHHHHhhcc
Q 030364          153 SAKSAHNVNELFYEIGDCTE  172 (178)
Q Consensus       153 Sa~~~~~i~~~~~~l~~~i~  172 (178)
                      ||+++.|++++++.|.+.+.
T Consensus        77 Sa~~~~gi~~L~~~l~~~~~   96 (156)
T cd01859          77 SAKERLGTKILRRTIKELAK   96 (156)
T ss_pred             EccccccHHHHHHHHHHHHh
Confidence            99999999999999987653

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>cd01855 YqeH YqeH

Probab=99.13  E-value=4.3e-10  Score=76.64  Aligned_cols=93  Identities=27%  Similarity=0.215  Sum_probs=64.8

Q ss_pred             hhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHH-----HHcC
Q 030364           72 YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYA-----QENG  146 (178)
Q Consensus        72 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~  146 (178)
                      +......+++.+|++++|+|++++..-     |...+... ..+.|+++|+||+|+..... .......+.     +..+
T Consensus        24 ~~~~l~~~~~~ad~il~VvD~~~~~~~-----~~~~l~~~-~~~~~~ilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~   96 (190)
T cd01855          24 ILNLLSSISPKKALVVHVVDIFDFPGS-----LIPRLRLF-GGNNPVILVGNKIDLLPKDK-NLVRIKNWLRAKAAAGLG   96 (190)
T ss_pred             HHHHHHhcccCCcEEEEEEECccCCCc-----cchhHHHh-cCCCcEEEEEEchhcCCCCC-CHHHHHHHHHHHHHhhcC
Confidence            467778889999999999999875411     11222222 24689999999999864332 223333333     2233


Q ss_pred             C---eEEEEeCCCCCCHHHHHHHHHhhc
Q 030364          147 L---SFLETSAKSAHNVNELFYEIGDCT  171 (178)
Q Consensus       147 ~---~~~~~Sa~~~~~i~~~~~~l~~~i  171 (178)
                      .   +++.+||++|.|+++++++|.+.+
T Consensus        97 ~~~~~i~~vSA~~~~gi~eL~~~l~~~l  124 (190)
T cd01855          97 LKPKDVILISAKKGWGVEELINAIKKLA  124 (190)
T ss_pred             CCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence            3   689999999999999999998865

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []

Probab=99.12  E-value=3.7e-09  Score=79.76  Aligned_cols=113  Identities=18%  Similarity=0.236  Sum_probs=77.7

Q ss_pred             EEEEEEeCCCchhhhccchhhhcCCcEEEEEEECCCHh----------HHHHHHHHHHHHHHh-CCCCceEEEEEeCCCC
Q 030364           59 IKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMD----------SFERAKKWVQELQRQ-GNPNLIMFLVANKVDL  127 (178)
Q Consensus        59 ~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~----------s~~~~~~~~~~~~~~-~~~~~~~ivv~nK~D~  127 (178)
                      ..+.++|.+|+..-+.-|..++.+++++|||+++++-+          .+.....++..+-.. ...+.|++|+.||.|+
T Consensus       236 ~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~D~  315 (389)
T PF00503_consen  236 RKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKIDL  315 (389)
T ss_dssp             EEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-HHH
T ss_pred             cccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecHHH
Confidence            56779999999999999999999999999999987422          234434444554443 2368999999999996


Q ss_pred             cc------c----------cc--cCHHHHHHHHHH------------cCCeEEEEeCCCCCCHHHHHHHHHhhc
Q 030364          128 EE------K----------RK--VKNEEGELYAQE------------NGLSFLETSAKSAHNVNELFYEIGDCT  171 (178)
Q Consensus       128 ~~------~----------~~--~~~~~~~~~~~~------------~~~~~~~~Sa~~~~~i~~~~~~l~~~i  171 (178)
                      ..      +          ..  -..+.+..+...            ..+.+..|+|.+..++..+|+.+.+.|
T Consensus       316 f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~v~~~i  389 (389)
T PF00503_consen  316 FEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNAVKDII  389 (389)
T ss_dssp             HHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHHHHHHH
T ss_pred             HHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHHHhcCcC
Confidence            32      1          01  223344444322            123556889999999999999887643

G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....

>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]

Probab=99.09  E-value=8.5e-09  Score=75.36  Aligned_cols=84  Identities=15%  Similarity=0.020  Sum_probs=54.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEe------------C----CeEEEEEEEeCCCchh--
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSL------------N----EVTIKFDIWDTAGQER--   71 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~------------~----~~~~~~~i~d~~g~~~--   71 (178)
                      .+++.++|.||+|||||+|+++.........|..+.+.......+            .    -....+.|+|.+|.-.  
T Consensus         2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA   81 (372)
T COG0012           2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA   81 (372)
T ss_pred             CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence            478999999999999999999987754333333333322222221            1    1235678999998421  


Q ss_pred             --hhc---cchhhhcCCcEEEEEEECC
Q 030364           72 --YHS---LAPMYYRGAAAAVVVYDIT   93 (178)
Q Consensus        72 --~~~---~~~~~~~~~d~~i~v~d~~   93 (178)
                        -..   ..-.-++.+|+++.|++..
T Consensus        82 s~GeGLGNkFL~~IRevdaI~hVVr~f  108 (372)
T COG0012          82 SKGEGLGNKFLDNIREVDAIIHVVRCF  108 (372)
T ss_pred             ccCCCcchHHHHhhhhcCeEEEEEEec
Confidence              111   2233468899999999866

>PRK12289 GTPase RsgA; Reviewed

Probab=99.09  E-value=9.1e-10  Score=81.34  Aligned_cols=92  Identities=15%  Similarity=0.151  Sum_probs=67.1

Q ss_pred             cchhhhcCCcEEEEEEECCCHh-HHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEe
Q 030364           75 LAPMYYRGAAAAVVVYDITSMD-SFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETS  153 (178)
Q Consensus        75 ~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S  153 (178)
                      +....+.++|.+++|+|+.++. ....+.+|+....   ..+.|+++|+||+|+....+.  .........++++++.+|
T Consensus        82 L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~---~~~ip~ILVlNK~DLv~~~~~--~~~~~~~~~~g~~v~~iS  156 (352)
T PRK12289         82 LDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAE---STGLEIVLCLNKADLVSPTEQ--QQWQDRLQQWGYQPLFIS  156 (352)
T ss_pred             eechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHH---HCCCCEEEEEEchhcCChHHH--HHHHHHHHhcCCeEEEEE
Confidence            4445688999999999999765 3445566665443   247899999999998643221  112223346788999999


Q ss_pred             CCCCCCHHHHHHHHHhhc
Q 030364          154 AKSAHNVNELFYEIGDCT  171 (178)
Q Consensus       154 a~~~~~i~~~~~~l~~~i  171 (178)
                      |+++.|++++++.|...+
T Consensus       157 A~tg~GI~eL~~~L~~ki  174 (352)
T PRK12289        157 VETGIGLEALLEQLRNKI  174 (352)
T ss_pred             cCCCCCHHHHhhhhccce
Confidence            999999999999987654

>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]

Probab=99.09  E-value=3.7e-09  Score=76.79  Aligned_cols=139  Identities=14%  Similarity=0.211  Sum_probs=85.3

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHHhCcCCCC----------ccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhc---
Q 030364            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDF----------QESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHS---   74 (178)
Q Consensus         8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~---   74 (178)
                      ...++|+++|+.|.|||||+|.|++......          ..++.........+.-++..+.+.++||||..++-.   
T Consensus        21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~  100 (373)
T COG5019          21 GIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSK  100 (373)
T ss_pred             CCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccc
Confidence            4578999999999999999999998643222          234444555566666678889999999999422111   


Q ss_pred             -----------cchh------------hh--cCCcEEEEEEECCCHhHHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCc
Q 030364           75 -----------LAPM------------YY--RGAAAAVVVYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLE  128 (178)
Q Consensus        75 -----------~~~~------------~~--~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~ivv~nK~D~~  128 (178)
                                 ....            .+  ..+++++|.+..+.. .+..+. ...+.+.    ..+.+|=|+.|+|..
T Consensus       101 ~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh-~l~~~DIe~Mk~ls----~~vNlIPVI~KaD~l  175 (373)
T COG5019         101 CWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGH-GLKPLDIEAMKRLS----KRVNLIPVIAKADTL  175 (373)
T ss_pred             cHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCC-CCCHHHHHHHHHHh----cccCeeeeeeccccC
Confidence                       0001            11  125788888887642 222211 1223333    345678889999986


Q ss_pred             cccccCH--HHHHHHHHHcCCeEEE
Q 030364          129 EKRKVKN--EEGELYAQENGLSFLE  151 (178)
Q Consensus       129 ~~~~~~~--~~~~~~~~~~~~~~~~  151 (178)
                      ...+...  +...+....+++++|.
T Consensus       176 T~~El~~~K~~I~~~i~~~nI~vf~  200 (373)
T COG5019         176 TDDELAEFKERIREDLEQYNIPVFD  200 (373)
T ss_pred             CHHHHHHHHHHHHHHHHHhCCceeC
Confidence            5443322  2334445567777774

>cd01854 YjeQ_engC YjeQ/EngC

Probab=99.08  E-value=8.3e-10  Score=79.81  Aligned_cols=89  Identities=17%  Similarity=0.155  Sum_probs=68.4

Q ss_pred             hhhhcCCcEEEEEEECCCHh-HHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCC
Q 030364           77 PMYYRGAAAAVVVYDITSMD-SFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAK  155 (178)
Q Consensus        77 ~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  155 (178)
                      +..+.++|.+++|+|+.++. ++..+.+|+..+..   .+.|+++|+||+|+....+  ......+....+.+++.+||+
T Consensus        73 ~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~---~~ip~iIVlNK~DL~~~~~--~~~~~~~~~~~g~~v~~vSA~  147 (287)
T cd01854          73 QVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA---AGIEPVIVLTKADLLDDEE--EELELVEALALGYPVLAVSAK  147 (287)
T ss_pred             eeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH---cCCCEEEEEEHHHCCChHH--HHHHHHHHHhCCCeEEEEECC
Confidence            44578999999999999887 77888887776654   3688999999999865321  122233344578899999999


Q ss_pred             CCCCHHHHHHHHHhh
Q 030364          156 SAHNVNELFYEIGDC  170 (178)
Q Consensus       156 ~~~~i~~~~~~l~~~  170 (178)
                      ++.|+++++..|...
T Consensus       148 ~g~gi~~L~~~L~~k  162 (287)
T cd01854         148 TGEGLDELREYLKGK  162 (287)
T ss_pred             CCccHHHHHhhhccc
Confidence            999999999888753

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>PRK12288 GTPase RsgA; Reviewed

Probab=99.06  E-value=1.9e-09  Score=79.60  Aligned_cols=91  Identities=15%  Similarity=0.125  Sum_probs=68.6

Q ss_pred             hcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccc-CHHHHHHHHHHcCCeEEEEeCCCCC
Q 030364           80 YRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKV-KNEEGELYAQENGLSFLETSAKSAH  158 (178)
Q Consensus        80 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~  158 (178)
                      ..++|.+++|++.....++..+..|+.....   .+.|+++|+||+|+....+. ...+.....+..+++++.+||+++.
T Consensus       118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~---~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg~  194 (347)
T PRK12288        118 AANIDQIVIVSAVLPELSLNIIDRYLVACET---LGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTGE  194 (347)
T ss_pred             EEEccEEEEEEeCCCCCCHHHHHHHHHHHHh---cCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCCc
Confidence            4669999999999888889999888765532   46889999999999653221 1122223334577899999999999


Q ss_pred             CHHHHHHHHHhhccc
Q 030364          159 NVNELFYEIGDCTEC  173 (178)
Q Consensus       159 ~i~~~~~~l~~~i~~  173 (178)
                      |+++++++|...+..
T Consensus       195 GideL~~~L~~ki~~  209 (347)
T PRK12288        195 GLEELEAALTGRISI  209 (347)
T ss_pred             CHHHHHHHHhhCCEE
Confidence            999999999876543

>PRK00098 GTPase RsgA; Reviewed

Probab=99.04  E-value=1.3e-09  Score=79.30  Aligned_cols=89  Identities=20%  Similarity=0.185  Sum_probs=65.3

Q ss_pred             hhcCCcEEEEEEECCCHhHHHH-HHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCC
Q 030364           79 YYRGAAAAVVVYDITSMDSFER-AKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSA  157 (178)
Q Consensus        79 ~~~~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  157 (178)
                      .+.++|.+++|+|+.++++... +.+|+..+..   .+.|+++|+||+|+....+. ........+..+++++.+||+++
T Consensus        77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~---~~ip~iIVlNK~DL~~~~~~-~~~~~~~~~~~g~~v~~vSA~~g  152 (298)
T PRK00098         77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA---NGIKPIIVLNKIDLLDDLEE-ARELLALYRAIGYDVLELSAKEG  152 (298)
T ss_pred             eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEhHHcCCCHHH-HHHHHHHHHHCCCeEEEEeCCCC
Confidence            4689999999999988765444 4666655543   47889999999998532221 12233444567889999999999


Q ss_pred             CCHHHHHHHHHhhc
Q 030364          158 HNVNELFYEIGDCT  171 (178)
Q Consensus       158 ~~i~~~~~~l~~~i  171 (178)
                      .|++++++.|...+
T Consensus       153 ~gi~~L~~~l~gk~  166 (298)
T PRK00098        153 EGLDELKPLLAGKV  166 (298)
T ss_pred             ccHHHHHhhccCce
Confidence            99999999876543

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=99.02  E-value=8.8e-10  Score=71.55  Aligned_cols=54  Identities=24%  Similarity=0.287  Sum_probs=40.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCc
Q 030364           12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ   69 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~   69 (178)
                      +++++|.+|+|||||+|++.+..... .....+.+.....+.+++   .+.+|||||.
T Consensus        85 ~~~~~G~~~vGKstlin~l~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~i~DtpG~  138 (141)
T cd01857          85 TIGLVGYPNVGKSSLINALVGKKKVS-VSATPGKTKHFQTIFLTP---TITLCDCPGL  138 (141)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCcee-eCCCCCcccceEEEEeCC---CEEEEECCCc
Confidence            89999999999999999999877543 333444455555555554   4679999995

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>cd01858 NGP_1 NGP-1

Probab=99.01  E-value=1.5e-09  Score=71.79  Aligned_cols=57  Identities=18%  Similarity=0.247  Sum_probs=39.6

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCc
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ   69 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~   69 (178)
                      ..++|+++|.||+|||||+|+|.+..... ..+..+.+.....+..+.   .+.++||||.
T Consensus       101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~-~~~~~g~T~~~~~~~~~~---~~~liDtPGi  157 (157)
T cd01858         101 KQISVGFIGYPNVGKSSIINTLRSKKVCK-VAPIPGETKVWQYITLMK---RIYLIDCPGV  157 (157)
T ss_pred             cceEEEEEeCCCCChHHHHHHHhcCCcee-eCCCCCeeEeEEEEEcCC---CEEEEECcCC
Confidence            46789999999999999999999765432 344444444444444433   2569999983

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.00  E-value=2.3e-09  Score=78.14  Aligned_cols=155  Identities=17%  Similarity=0.250  Sum_probs=96.0

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCcCCCCc------------c-----------CceeeeEEEEEEEeC----------
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQ------------E-----------STIGAAFFTQVLSLN----------   55 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~------------~-----------~~~~~~~~~~~~~~~----------   55 (178)
                      ..++++|+|...+|||||+-.|+.++...-.            +           ...+.+...+.+++.          
T Consensus       166 ievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e  245 (591)
T KOG1143|consen  166 IEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVE  245 (591)
T ss_pred             eEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHh
Confidence            4789999999999999999988875432111            0           111112122222221          


Q ss_pred             CeEEEEEEEeCCCchhhhccchhhhc--CCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccc-
Q 030364           56 EVTIKFDIWDTAGQERYHSLAPMYYR--GAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRK-  132 (178)
Q Consensus        56 ~~~~~~~i~d~~g~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~-  132 (178)
                      ...--+.|+|..|+.+|.......+.  ..|..++++++.....+.. ++.+-.+..   -+.|++|+++|+|+..+.- 
T Consensus       246 ~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tT-rEHLgl~~A---L~iPfFvlvtK~Dl~~~~~~  321 (591)
T KOG1143|consen  246 KSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTT-REHLGLIAA---LNIPFFVLVTKMDLVDRQGL  321 (591)
T ss_pred             hhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCcccc-HHHHHHHHH---hCCCeEEEEEeeccccchhH
Confidence            12234679999999999876655444  3678899999887654433 222223333   3899999999999865311 


Q ss_pred             -----------------------cCHHH----HHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Q 030364          133 -----------------------VKNEE----GELYAQENGLSFLETSAKSAHNVNELFYEI  167 (178)
Q Consensus       133 -----------------------~~~~~----~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  167 (178)
                                             ....+    +++.+...-.|+|-+|+.+|+|++.+...|
T Consensus       322 ~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~fL  383 (591)
T KOG1143|consen  322 KKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRTFL  383 (591)
T ss_pred             HHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHHHH
Confidence                                   11111    222222233599999999999988765543

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=98.99  E-value=1.8e-09  Score=72.24  Aligned_cols=57  Identities=21%  Similarity=0.309  Sum_probs=41.0

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCc
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ   69 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~   69 (178)
                      ..++++++|.||+|||||+|++.+..... ..+..+.+.....+..+.   .+.++|+||.
T Consensus       116 ~~~~~~~vG~pnvGKSslin~l~~~~~~~-~~~~pg~T~~~~~~~~~~---~~~l~DtPGi  172 (172)
T cd04178         116 TSITVGVVGFPNVGKSSLINSLKRSRACN-VGATPGVTKSMQEVHLDK---KVKLLDSPGI  172 (172)
T ss_pred             cCcEEEEEcCCCCCHHHHHHHHhCcccce-ecCCCCeEcceEEEEeCC---CEEEEECcCC
Confidence            35899999999999999999999866533 344455555444444433   4679999983

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.93  E-value=4e-08  Score=71.94  Aligned_cols=143  Identities=13%  Similarity=0.206  Sum_probs=85.2

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCcCCCC---------ccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhc-----
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDF---------QESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHS-----   74 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~-----   74 (178)
                      ..++++++|.+|.|||||+|.|+...+...         ...+.........+.-++...+++++||||-.+...     
T Consensus        20 ~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w   99 (366)
T KOG2655|consen   20 FDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCW   99 (366)
T ss_pred             CceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccc
Confidence            468999999999999999999998744322         122333344444455577888999999999321110     


Q ss_pred             --------------------cchhhhc--CCcEEEEEEECCCHhHHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCcccc
Q 030364           75 --------------------LAPMYYR--GAAAAVVVYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEEKR  131 (178)
Q Consensus        75 --------------------~~~~~~~--~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~ivv~nK~D~~~~~  131 (178)
                                          ..+..+.  .+++++|.+..+.. .+..+. ...+.+    ...+++|=|+.|+|.....
T Consensus       100 ~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~gh-gL~p~Di~~Mk~l----~~~vNiIPVI~KaD~lT~~  174 (366)
T KOG2655|consen  100 RPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGH-GLKPLDIEFMKKL----SKKVNLIPVIAKADTLTKD  174 (366)
T ss_pred             hhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCC-CCcHhhHHHHHHH----hccccccceeeccccCCHH
Confidence                                1111222  46788888887742 111111 111222    3456688889999976544


Q ss_pred             ccCH--HHHHHHHHHcCCeEEEEeCCC
Q 030364          132 KVKN--EEGELYAQENGLSFLETSAKS  156 (178)
Q Consensus       132 ~~~~--~~~~~~~~~~~~~~~~~Sa~~  156 (178)
                      ++..  ....+....+++++|......
T Consensus       175 El~~~K~~I~~~i~~~nI~vf~fp~~~  201 (366)
T KOG2655|consen  175 ELNQFKKRIRQDIEEHNIKVFDFPTDE  201 (366)
T ss_pred             HHHHHHHHHHHHHHHcCcceecCCCCc
Confidence            4322  233444555677766655443

>KOG2486 consensus Predicted GTPase [General function prediction only]

Probab=98.92  E-value=3.8e-09  Score=74.01  Aligned_cols=157  Identities=17%  Similarity=0.174  Sum_probs=92.8

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccC-ceeeeEEEEEEEeCCeEEEEEEEeCCCc----------hhhhcc
Q 030364            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQES-TIGAAFFTQVLSLNEVTIKFDIWDTAGQ----------ERYHSL   75 (178)
Q Consensus         7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~d~~g~----------~~~~~~   75 (178)
                      +....+++++|.+|+|||+|+|.+...+....... ..+.+.....+.+..   .+.+.|.||.          .++..+
T Consensus       133 k~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~~---~~~~vDlPG~~~a~y~~~~~~d~~~~  209 (320)
T KOG2486|consen  133 KDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVGK---SWYEVDLPGYGRAGYGFELPADWDKF  209 (320)
T ss_pred             CCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeeccc---eEEEEecCCcccccCCccCcchHhHh
Confidence            45678999999999999999999988765443333 555554444444444   4568999992          223334


Q ss_pred             chhhhcCCc---EEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccc------cCHHH--HHHHHHH
Q 030364           76 APMYYRGAA---AAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRK------VKNEE--GELYAQE  144 (178)
Q Consensus        76 ~~~~~~~~d---~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~------~~~~~--~~~~~~~  144 (178)
                      ...|+.+-+   -+.+.+|++.+-.  ....  ..+.-....++|+.+|.||||......      .....  ...+.+.
T Consensus       210 t~~Y~leR~nLv~~FLLvd~sv~i~--~~D~--~~i~~~ge~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~~  285 (320)
T KOG2486|consen  210 TKSYLLERENLVRVFLLVDASVPIQ--PTDN--PEIAWLGENNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIRG  285 (320)
T ss_pred             HHHHHHhhhhhheeeeeeeccCCCC--CCCh--HHHHHHhhcCCCeEEeeehhhhhhhccccccCccccceeehhhcccc
Confidence            444443322   3445556653211  1111  112222235899999999999743211      11111  1111111


Q ss_pred             ---cCCeEEEEeCCCCCCHHHHHHHHHhh
Q 030364          145 ---NGLSFLETSAKSAHNVNELFYEIGDC  170 (178)
Q Consensus       145 ---~~~~~~~~Sa~~~~~i~~~~~~l~~~  170 (178)
                         ...|++.+|+.++.|+++++-.+.+.
T Consensus       286 ~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q~  314 (320)
T KOG2486|consen  286 VFLVDLPWIYVSSVTSLGRDLLLLHIAQL  314 (320)
T ss_pred             ceeccCCceeeecccccCceeeeeehhhh
Confidence               23478889999999999988766654

>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]

Probab=98.91  E-value=1.7e-08  Score=72.73  Aligned_cols=151  Identities=17%  Similarity=0.176  Sum_probs=100.5

Q ss_pred             CCCceeEEEEEcCCCCCHHHHHHHHHhC----------cCC----CCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchh
Q 030364            6 NKNIQVKLVLLGDMGTGKTSLVLRFVKG----------QFF----DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER   71 (178)
Q Consensus         6 ~~~~~~~i~v~G~~~~GKStl~~~l~~~----------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~   71 (178)
                      .+.++++|.-+|+..-|||||-.+++.-          ++.    ...+...+.+.....+.+.-....+-=.|+||+.+
T Consensus        50 R~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHAD  129 (449)
T KOG0460|consen   50 RDKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHAD  129 (449)
T ss_pred             cCCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHH
Confidence            4567999999999999999998877641          110    11233455566666666665555666789999999


Q ss_pred             hhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccc---ccCHHHHHHHHHHcC--
Q 030364           72 YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR---KVKNEEGELYAQENG--  146 (178)
Q Consensus        72 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~---~~~~~~~~~~~~~~~--  146 (178)
                      |-.....-....|+.|+|+.++|.. +.+.++.+...++-..  ..++|.+||.|+.+..   +..+-+.+++...++  
T Consensus       130 YIKNMItGaaqMDGaILVVaatDG~-MPQTrEHlLLArQVGV--~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf~  206 (449)
T KOG0460|consen  130 YIKNMITGAAQMDGAILVVAATDGP-MPQTREHLLLARQVGV--KHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGFD  206 (449)
T ss_pred             HHHHhhcCccccCceEEEEEcCCCC-CcchHHHHHHHHHcCC--ceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCCC
Confidence            8887777778899999999999854 3333433333333322  3377889999987433   233345566666665  


Q ss_pred             ---CeEEEEe---CCCCCC
Q 030364          147 ---LSFLETS---AKSAHN  159 (178)
Q Consensus       147 ---~~~~~~S---a~~~~~  159 (178)
                         +|++.=|   |+.|.+
T Consensus       207 Gd~~PvI~GSAL~ALeg~~  225 (449)
T KOG0460|consen  207 GDNTPVIRGSALCALEGRQ  225 (449)
T ss_pred             CCCCCeeecchhhhhcCCC
Confidence               4888766   455644

>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]

Probab=98.90  E-value=4.9e-08  Score=67.24  Aligned_cols=152  Identities=14%  Similarity=0.181  Sum_probs=82.0

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCcCCCC---------ccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhh-------
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDF---------QESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERY-------   72 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~-------   72 (178)
                      -.++|+|+|.+|.||||++|+++.......         +..|.........+.-++...++.++||||..+.       
T Consensus        45 F~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncW  124 (336)
T KOG1547|consen   45 FDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCW  124 (336)
T ss_pred             CceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchh
Confidence            478999999999999999999987544321         1112222223333444677788899999994211       


Q ss_pred             -----------hc--------cchhhhcC--CcEEEEEEECCCHhHHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCccc
Q 030364           73 -----------HS--------LAPMYYRG--AAAAVVVYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEEK  130 (178)
Q Consensus        73 -----------~~--------~~~~~~~~--~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~ivv~nK~D~~~~  130 (178)
                                 ..        .+...+.+  ++.+++.+..+- .++..+. .+++.+.+    -..++-|+.|+|...-
T Consensus       125 ePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptG-hsLrplDieflkrLt~----vvNvvPVIakaDtlTl  199 (336)
T KOG1547|consen  125 EPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTG-HSLRPLDIEFLKRLTE----VVNVVPVIAKADTLTL  199 (336)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCC-CccCcccHHHHHHHhh----hheeeeeEeecccccH
Confidence                       00        11222232  356666666653 3333322 22233322    3446778889995321


Q ss_pred             cc--cCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Q 030364          131 RK--VKNEEGELYAQENGLSFLETSAKSAHNVNELFY  165 (178)
Q Consensus       131 ~~--~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  165 (178)
                      .+  .-.+..++-...+++.+++--+.+...=+..++
T Consensus       200 eEr~~FkqrI~~el~~~~i~vYPq~~fded~ed~~lN  236 (336)
T KOG1547|consen  200 EERSAFKQRIRKELEKHGIDVYPQDSFDEDLEDKTLN  236 (336)
T ss_pred             HHHHHHHHHHHHHHHhcCcccccccccccchhHHHHH
Confidence            11  111222333345677777766555444344444

>cd01856 YlqF YlqF

Probab=98.89  E-value=7.3e-09  Score=69.42  Aligned_cols=58  Identities=17%  Similarity=0.205  Sum_probs=41.6

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCc
Q 030364            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ   69 (178)
Q Consensus         8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~   69 (178)
                      +..++++++|.+|+|||||+|++.+..+.. ..+..+++.....+.++   ..+.++||||.
T Consensus       113 ~~~~~~~~~G~~~vGKstlin~l~~~~~~~-~~~~~~~T~~~~~~~~~---~~~~~iDtpG~  170 (171)
T cd01856         113 PRGIRAMVVGIPNVGKSTLINRLRGKKVAK-VGNKPGVTKGIQWIKIS---PGIYLLDTPGI  170 (171)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCCCcee-ecCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence            345799999999999999999999876532 33444444444445544   34679999994

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.89  E-value=1e-08  Score=76.49  Aligned_cols=95  Identities=28%  Similarity=0.324  Sum_probs=68.0

Q ss_pred             chhhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHH----HHHHH
Q 030364           69 QERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGE----LYAQE  144 (178)
Q Consensus        69 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~----~~~~~  144 (178)
                      .+.|..+...+...++++++|+|+.+..     ..|...+.+.. .+.|+++|+||+|+... ....+...    .+++.
T Consensus        50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~-----~s~~~~l~~~~-~~~piilV~NK~DLl~k-~~~~~~~~~~l~~~~k~  122 (360)
T TIGR03597        50 DDDFLNLLNSLGDSNALIVYVVDIFDFE-----GSLIPELKRFV-GGNPVLLVGNKIDLLPK-SVNLSKIKEWMKKRAKE  122 (360)
T ss_pred             HHHHHHHHhhcccCCcEEEEEEECcCCC-----CCccHHHHHHh-CCCCEEEEEEchhhCCC-CCCHHHHHHHHHHHHHH
Confidence            4677778888888999999999998644     22333343332 36789999999998642 22233333    23556


Q ss_pred             cCC---eEEEEeCCCCCCHHHHHHHHHhh
Q 030364          145 NGL---SFLETSAKSAHNVNELFYEIGDC  170 (178)
Q Consensus       145 ~~~---~~~~~Sa~~~~~i~~~~~~l~~~  170 (178)
                      .++   .++.+||++|.|++++++.|.+.
T Consensus       123 ~g~~~~~i~~vSAk~g~gv~eL~~~l~~~  151 (360)
T TIGR03597       123 LGLKPVDIILVSAKKGNGIDELLDKIKKA  151 (360)
T ss_pred             cCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence            676   48999999999999999998754

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>cd01859 MJ1464 MJ1464

Probab=98.89  E-value=8.1e-09  Score=68.14  Aligned_cols=57  Identities=19%  Similarity=0.215  Sum_probs=40.3

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCC
Q 030364            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAG   68 (178)
Q Consensus         8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g   68 (178)
                      ....+++++|.+|+||||++|++.+... ....++.+.+.....+..+.   .+.+|||||
T Consensus        99 ~~~~~~~~ig~~~~Gkssl~~~l~~~~~-~~~~~~~~~t~~~~~~~~~~---~~~~~DtpG  155 (156)
T cd01859          99 GKEGKVGVVGYPNVGKSSIINALKGRHS-ASTSPSPGYTKGEQLVKITS---KIYLLDTPG  155 (156)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCCCc-cccCCCCCeeeeeEEEEcCC---CEEEEECcC
Confidence            3467899999999999999999996553 23455555554333333333   577999998

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>cd01855 YqeH YqeH

Probab=98.88  E-value=5.3e-09  Score=71.28  Aligned_cols=57  Identities=18%  Similarity=0.243  Sum_probs=40.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCcCCC-------CccCceeeeEEEEEEEeCCeEEEEEEEeCCCc
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVKGQFFD-------FQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ   69 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~   69 (178)
                      ..+++++|.+|+|||||+|+|.+.....       ......+++.....+..+.   .+.++||||.
T Consensus       127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~~~~~DtPG~  190 (190)
T cd01855         127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN---GKKLYDTPGI  190 (190)
T ss_pred             CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC---CCEEEeCcCC
Confidence            4689999999999999999999754321       2334445555555555543   3579999993

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.85  E-value=1.4e-08  Score=73.99  Aligned_cols=121  Identities=17%  Similarity=0.265  Sum_probs=79.7

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCcCCCCcc-CceeeeEEEEEEEe------CCeE-----------------------
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQE-STIGAAFFTQVLSL------NEVT-----------------------   58 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~-~~~~~~~~~~~~~~------~~~~-----------------------   58 (178)
                      .+.=|+++|+-..||||+++.|+.+.++.... |..++++....+.-      +|..                       
T Consensus        57 ~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf  136 (532)
T KOG1954|consen   57 AKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRF  136 (532)
T ss_pred             cCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHH
Confidence            35679999999999999999999998875432 33333333333222      1111                       


Q ss_pred             ----------EEEEEEeCCCch-----------hhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCce
Q 030364           59 ----------IKFDIWDTAGQE-----------RYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLI  117 (178)
Q Consensus        59 ----------~~~~i~d~~g~~-----------~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~  117 (178)
                                -.+.++|+||.-           .|....+-+...+|.++++||+..-+.-++....+..+..+   .-.
T Consensus       137 ~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~---Edk  213 (532)
T KOG1954|consen  137 MCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGH---EDK  213 (532)
T ss_pred             HHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCC---cce
Confidence                      125599999941           23334555678899999999998655444455555555544   445


Q ss_pred             EEEEEeCCCCccccc
Q 030364          118 MFLVANKVDLEEKRK  132 (178)
Q Consensus       118 ~ivv~nK~D~~~~~~  132 (178)
                      +=||.||+|..+..+
T Consensus       214 iRVVLNKADqVdtqq  228 (532)
T KOG1954|consen  214 IRVVLNKADQVDTQQ  228 (532)
T ss_pred             eEEEeccccccCHHH
Confidence            778899999866444

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.84  E-value=1.3e-08  Score=73.25  Aligned_cols=58  Identities=21%  Similarity=0.330  Sum_probs=41.3

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCc
Q 030364            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ   69 (178)
Q Consensus         8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~   69 (178)
                      .+.++++++|.||+|||||+|+|.+..... ..+..+.+.....+.++.   .+.++||||.
T Consensus       116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~~-~~~~~g~T~~~~~~~~~~---~~~l~DtPG~  173 (276)
T TIGR03596       116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAK-VGNRPGVTKGQQWIKLSD---GLELLDTPGI  173 (276)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCCCccc-cCCCCCeecceEEEEeCC---CEEEEECCCc
Confidence            346899999999999999999999765433 233344444444444433   3579999997

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.84  E-value=1.8e-08  Score=72.95  Aligned_cols=58  Identities=19%  Similarity=0.328  Sum_probs=41.9

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCc
Q 030364            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ   69 (178)
Q Consensus         8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~   69 (178)
                      ...++++++|.||+|||||+|+|.+..... ..+..+.+.....+..+.   .+.++||||.
T Consensus       119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~-~~~~~g~T~~~~~~~~~~---~~~l~DtPGi  176 (287)
T PRK09563        119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAK-TGNRPGVTKAQQWIKLGK---GLELLDTPGI  176 (287)
T ss_pred             cCceEEEEECCCCCCHHHHHHHHhcCCccc-cCCCCCeEEEEEEEEeCC---cEEEEECCCc
Confidence            356899999999999999999999866433 234445454444444443   3669999997

>cd01858 NGP_1 NGP-1

Probab=98.82  E-value=2.4e-08  Score=66.01  Aligned_cols=90  Identities=14%  Similarity=0.141  Sum_probs=57.6

Q ss_pred             hhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCC
Q 030364           79 YYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAH  158 (178)
Q Consensus        79 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  158 (178)
                      .++++|++++|+|+.++..-. ...+.+.+... ..+.|+++|+||+|+..+... ......+.+.+....+.+||+++.
T Consensus         5 ~l~~aD~il~VvD~~~p~~~~-~~~i~~~l~~~-~~~~p~ilVlNKiDl~~~~~~-~~~~~~~~~~~~~~~~~iSa~~~~   81 (157)
T cd01858           5 VIDSSDVVIQVLDARDPMGTR-CKHVEEYLKKE-KPHKHLIFVLNKCDLVPTWVT-ARWVKILSKEYPTIAFHASINNPF   81 (157)
T ss_pred             hhhhCCEEEEEEECCCCcccc-CHHHHHHHHhc-cCCCCEEEEEEchhcCCHHHH-HHHHHHHhcCCcEEEEEeeccccc
Confidence            468899999999999863211 11222223222 346899999999998543221 111222222222345789999999


Q ss_pred             CHHHHHHHHHhhc
Q 030364          159 NVNELFYEIGDCT  171 (178)
Q Consensus       159 ~i~~~~~~l~~~i  171 (178)
                      |++++.++|.+.+
T Consensus        82 ~~~~L~~~l~~~~   94 (157)
T cd01858          82 GKGSLIQLLRQFS   94 (157)
T ss_pred             cHHHHHHHHHHHH
Confidence            9999999997654

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>COG1161 Predicted GTPases [General function prediction only]

Probab=98.80  E-value=1.4e-08  Score=74.43  Aligned_cols=58  Identities=19%  Similarity=0.283  Sum_probs=45.4

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCc
Q 030364            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ   69 (178)
Q Consensus         8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~   69 (178)
                      ....+++|+|-||+|||||+|+|.+... ....+.+|.+.....+..+..   +.++||||.
T Consensus       130 ~~~~~v~vvG~PNVGKSslIN~L~~k~~-~~~s~~PG~Tk~~q~i~~~~~---i~LlDtPGi  187 (322)
T COG1161         130 KRKIRVGVVGYPNVGKSTLINRLLGKKV-AKTSNRPGTTKGIQWIKLDDG---IYLLDTPGI  187 (322)
T ss_pred             ccceEEEEEcCCCCcHHHHHHHHhcccc-eeeCCCCceecceEEEEcCCC---eEEecCCCc
Confidence            3468899999999999999999998766 335555677766666666654   669999996

>COG5258 GTPBP1 GTPase [General function prediction only]

Probab=98.78  E-value=6.6e-08  Score=70.89  Aligned_cols=160  Identities=18%  Similarity=0.149  Sum_probs=94.9

Q ss_pred             CCCCceeEEEEEcCCCCCHHHHHHHHHhCcCCCC--------------ccCceeeeEEEEEEEeCC--------------
Q 030364            5 SNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDF--------------QESTIGAAFFTQVLSLNE--------------   56 (178)
Q Consensus         5 ~~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~--------------~~~~~~~~~~~~~~~~~~--------------   56 (178)
                      ...+..+.|.+.|+.+.|||||+-.|.-+....-              .....+.+.....+-+++              
T Consensus       112 ~~~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE  191 (527)
T COG5258         112 EEAPEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAE  191 (527)
T ss_pred             cCCCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHH
Confidence            3456789999999999999999988776543221              111111222222222211              


Q ss_pred             -------eEEEEEEEeCCCchhhhccc--hhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCC
Q 030364           57 -------VTIKFDIWDTAGQERYHSLA--PMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDL  127 (178)
Q Consensus        57 -------~~~~~~i~d~~g~~~~~~~~--~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~  127 (178)
                             ..--+.|.|+.|++.|-...  -.+-.+.|..++++.+++.-+--. ++.+-.+.   .-+.|++|+.||+|+
T Consensus       192 ~~~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~t-kEHLgi~~---a~~lPviVvvTK~D~  267 (527)
T COG5258         192 KAAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMT-KEHLGIAL---AMELPVIVVVTKIDM  267 (527)
T ss_pred             HhHhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhh-hHhhhhhh---hhcCCEEEEEEeccc
Confidence                   11336699999998886533  334467899999999998543211 11111122   237899999999998


Q ss_pred             ccccccC--HHHHH----------------------HHHHHc---CCeEEEEeCCCCCCHHHHHHHHH
Q 030364          128 EEKRKVK--NEEGE----------------------LYAQEN---GLSFLETSAKSAHNVNELFYEIG  168 (178)
Q Consensus       128 ~~~~~~~--~~~~~----------------------~~~~~~---~~~~~~~Sa~~~~~i~~~~~~l~  168 (178)
                      .......  .++..                      ..+...   -+|+|.+|+.+|+|++-+.+.+.
T Consensus       268 ~~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f~  335 (527)
T COG5258         268 VPDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFFL  335 (527)
T ss_pred             CcHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHHH
Confidence            5421100  00110                      111111   25999999999999876665443

>TIGR00092 GTP-binding protein YchF

Probab=98.76  E-value=3.9e-08  Score=72.73  Aligned_cols=83  Identities=12%  Similarity=-0.073  Sum_probs=56.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCcC-CCCccCceeeeEEEEEEEeCCe---------------EEEEEEEeCCCchhhh-
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVKGQF-FDFQESTIGAAFFTQVLSLNEV---------------TIKFDIWDTAGQERYH-   73 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~d~~g~~~~~-   73 (178)
                      +++.++|.|++|||||++.+++... .....|..+.......+.+++.               ...+.+.|.||...-. 
T Consensus         3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs   82 (368)
T TIGR00092         3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS   82 (368)
T ss_pred             ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence            7899999999999999999998876 3333344433333444444332               2457899999963211 


Q ss_pred             ------ccchhhhcCCcEEEEEEECC
Q 030364           74 ------SLAPMYYRGAAAAVVVYDIT   93 (178)
Q Consensus        74 ------~~~~~~~~~~d~~i~v~d~~   93 (178)
                            ...-..++.+|+++.|++..
T Consensus        83 ~g~Glgn~fL~~ir~~d~l~hVvr~f  108 (368)
T TIGR00092        83 KGEGLGNQFLANIREVDIIQHVVRCF  108 (368)
T ss_pred             cccCcchHHHHHHHhCCEEEEEEeCC
Confidence                  12334578999999999975

This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.

>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=98.75  E-value=1.7e-07  Score=72.02  Aligned_cols=138  Identities=14%  Similarity=0.169  Sum_probs=83.5

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEE
Q 030364            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA   86 (178)
Q Consensus         7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~   86 (178)
                      .++.+-++|+|+||+|||||++.|.............     .......++...++|.++|.+  ...+ ....+-+|.+
T Consensus        66 ~PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~-----GPiTvvsgK~RRiTflEcp~D--l~~m-iDvaKIaDLV  137 (1077)
T COG5192          66 LPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIR-----GPITVVSGKTRRITFLECPSD--LHQM-IDVAKIADLV  137 (1077)
T ss_pred             CCCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccC-----CceEEeecceeEEEEEeChHH--HHHH-HhHHHhhhee
Confidence            3567888999999999999999887543211111111     111134566778899999943  2332 3345779999


Q ss_pred             EEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHH-----HHHHHH-cCCeEEEEeCC
Q 030364           87 VVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEG-----ELYAQE-NGLSFLETSAK  155 (178)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~-----~~~~~~-~~~~~~~~Sa~  155 (178)
                      ++++|.+-.-.++.+ .++..+..+..|.  ++-|+++.|+...........     +.|... .|+.+|.+|..
T Consensus       138 lLlIdgnfGfEMETm-EFLnil~~HGmPr--vlgV~ThlDlfk~~stLr~~KKrlkhRfWtEiyqGaKlFylsgV  209 (1077)
T COG5192         138 LLLIDGNFGFEMETM-EFLNILISHGMPR--VLGVVTHLDLFKNPSTLRSIKKRLKHRFWTEIYQGAKLFYLSGV  209 (1077)
T ss_pred             EEEeccccCceehHH-HHHHHHhhcCCCc--eEEEEeecccccChHHHHHHHHHHhhhHHHHHcCCceEEEeccc
Confidence            999999865434433 3445566664332  566789999865332211111     222222 36788888853

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=98.75  E-value=1.3e-08  Score=66.74  Aligned_cols=60  Identities=23%  Similarity=0.264  Sum_probs=35.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCcCCCC------ccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhh
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVKGQFFDF------QESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYH   73 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~   73 (178)
                      -.++++|++|||||||+|.|.+......      ......++.....+.+++..   .++|+||...+.
T Consensus        36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~g~---~iIDTPGf~~~~  101 (161)
T PF03193_consen   36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPDGG---YIIDTPGFRSFG  101 (161)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETTSE---EEECSHHHHT--
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCCCc---EEEECCCCCccc
Confidence            4789999999999999999998632211      11222233344555664443   389999975443

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>cd01856 YlqF YlqF

Probab=98.75  E-value=3.3e-08  Score=66.26  Aligned_cols=98  Identities=19%  Similarity=0.107  Sum_probs=63.4

Q ss_pred             CCCc-hhhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHH
Q 030364           66 TAGQ-ERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQE  144 (178)
Q Consensus        66 ~~g~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~  144 (178)
                      .||+ .+........++++|.+++|+|++++...... .+...     ..+.|+++|+||+|+.+....  ....++.+.
T Consensus         2 ~~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~-~i~~~-----~~~k~~ilVlNK~Dl~~~~~~--~~~~~~~~~   73 (171)
T cd01856           2 FPGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRNP-LLEKI-----LGNKPRIIVLNKADLADPKKT--KKWLKYFES   73 (171)
T ss_pred             CchHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCCh-hhHhH-----hcCCCEEEEEehhhcCChHHH--HHHHHHHHh
Confidence            3454 23334446678999999999999876432211 11111     135689999999998543211  111122233


Q ss_pred             cCCeEEEEeCCCCCCHHHHHHHHHhhc
Q 030364          145 NGLSFLETSAKSAHNVNELFYEIGDCT  171 (178)
Q Consensus       145 ~~~~~~~~Sa~~~~~i~~~~~~l~~~i  171 (178)
                      .+..++.+||+++.|++++.+.|.+.+
T Consensus        74 ~~~~vi~iSa~~~~gi~~L~~~l~~~l  100 (171)
T cd01856          74 KGEKVLFVNAKSGKGVKKLLKAAKKLL  100 (171)
T ss_pred             cCCeEEEEECCCcccHHHHHHHHHHHH
Confidence            456789999999999999999988764

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.74  E-value=6.4e-08  Score=63.81  Aligned_cols=83  Identities=13%  Similarity=0.029  Sum_probs=54.6

Q ss_pred             cEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHH
Q 030364           84 AAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNEL  163 (178)
Q Consensus        84 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~  163 (178)
                      |++++|+|+.++.+...  .++.. ......+.|+++|+||+|+.....+. .....+....+.+++.+||+++.|++++
T Consensus         1 Dvvl~VvD~~~p~~~~~--~~i~~-~~~~~~~~p~IiVlNK~Dl~~~~~~~-~~~~~~~~~~~~~ii~vSa~~~~gi~~L   76 (155)
T cd01849           1 DVILEVLDARDPLGTRS--PDIER-VLIKEKGKKLILVLNKADLVPKEVLR-KWLAYLRHSYPTIPFKISATNGQGIEKK   76 (155)
T ss_pred             CEEEEEEeccCCccccC--HHHHH-HHHhcCCCCEEEEEechhcCCHHHHH-HHHHHHHhhCCceEEEEeccCCcChhhH
Confidence            68999999988755432  12221 11123478999999999985432111 1111233334567899999999999999


Q ss_pred             HHHHHhh
Q 030364          164 FYEIGDC  170 (178)
Q Consensus       164 ~~~l~~~  170 (178)
                      .+.|.+.
T Consensus        77 ~~~i~~~   83 (155)
T cd01849          77 ESAFTKQ   83 (155)
T ss_pred             HHHHHHH
Confidence            9988764

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]

Probab=98.72  E-value=5.3e-07  Score=70.46  Aligned_cols=144  Identities=15%  Similarity=0.166  Sum_probs=80.1

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCc-cCceee----------e------------------------------
Q 030364            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQ-ESTIGA----------A------------------------------   46 (178)
Q Consensus         8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~-~~~~~~----------~------------------------------   46 (178)
                      ...+||++.|..++||||++|+++..+.-+.. .+++..          .                              
T Consensus       107 r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~  186 (749)
T KOG0448|consen  107 RRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDL  186 (749)
T ss_pred             hcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCccccc
Confidence            45789999999999999999999985432211 111000          0                              


Q ss_pred             --EEEEEEEeCCeE-----EEEEEEeCCCch---hhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCc
Q 030364           47 --FFTQVLSLNEVT-----IKFDIWDTAGQE---RYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNL  116 (178)
Q Consensus        47 --~~~~~~~~~~~~-----~~~~i~d~~g~~---~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~  116 (178)
                        .....+.++...     -.+.+.|.||-+   ........+..++|++|+|.++.+-....+ ..++....+.   +.
T Consensus       187 ~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~se-k~Ff~~vs~~---Kp  262 (749)
T KOG0448|consen  187 GAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSE-KQFFHKVSEE---KP  262 (749)
T ss_pred             CcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHH-HHHHHHhhcc---CC
Confidence              000001111110     134578888853   334445667789999999999987544433 3333333332   33


Q ss_pred             eEEEEEeCCCCccccccCHHHHHHHHHHcC--------CeEEEEeCC
Q 030364          117 IMFLVANKVDLEEKRKVKNEEGELYAQENG--------LSFLETSAK  155 (178)
Q Consensus       117 ~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--------~~~~~~Sa~  155 (178)
                      .++++-||.|.....+...+....-...+.        -.++.+||+
T Consensus       263 niFIlnnkwDasase~ec~e~V~~Qi~eL~v~~~~eA~DrvfFVS~~  309 (749)
T KOG0448|consen  263 NIFILNNKWDASASEPECKEDVLKQIHELSVVTEKEAADRVFFVSAK  309 (749)
T ss_pred             cEEEEechhhhhcccHHHHHHHHHHHHhcCcccHhhhcCeeEEEecc
Confidence            366667888976543333333222222222        267778843

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=98.72  E-value=2.7e-06  Score=55.34  Aligned_cols=147  Identities=20%  Similarity=0.228  Sum_probs=80.4

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCC-Cch--------------hh-
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTA-GQE--------------RY-   72 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~-g~~--------------~~-   72 (178)
                      ..+||.+.|+||+||||++.++...--..   ...--......+.-++...-|.+.|+. |..              .| 
T Consensus         4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~---g~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~   80 (179)
T COG1618           4 MAMKIFITGRPGVGKTTLVLKIAEKLREK---GYKVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYG   80 (179)
T ss_pred             cceEEEEeCCCCccHHHHHHHHHHHHHhc---CceeeeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEE
Confidence            47899999999999999999877421111   011122334444556666777777776 311              01 


Q ss_pred             ------h----ccchhhhcCCcEEEEEEECCCHhHHHH-HHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHH
Q 030364           73 ------H----SLAPMYYRGAAAAVVVYDITSMDSFER-AKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELY  141 (178)
Q Consensus        73 ------~----~~~~~~~~~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~  141 (178)
                            .    .....+++.+|++|+  |---+  ++. ...+...+...-..+.|++.++++.+. +  +    -.+.+
T Consensus        81 V~v~~le~i~~~al~rA~~~aDvIII--DEIGp--MElks~~f~~~ve~vl~~~kpliatlHrrsr-~--P----~v~~i  149 (179)
T COG1618          81 VNVEGLEEIAIPALRRALEEADVIII--DEIGP--MELKSKKFREAVEEVLKSGKPLIATLHRRSR-H--P----LVQRI  149 (179)
T ss_pred             eeHHHHHHHhHHHHHHHhhcCCEEEE--ecccc--hhhccHHHHHHHHHHhcCCCcEEEEEecccC-C--h----HHHHh
Confidence                  1    112334456676654  33222  222 234444444444467888887877754 1  1    12222


Q ss_pred             HHHcCCeEEEEeCCCCCCHHHHHHHHHhhccc
Q 030364          142 AQENGLSFLETSAKSAHNVNELFYEIGDCTEC  173 (178)
Q Consensus       142 ~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~~  173 (178)
                       +..+.-++.   .+..|-+.+++.+...+..
T Consensus       150 -k~~~~v~v~---lt~~NR~~i~~~Il~~L~~  177 (179)
T COG1618         150 -KKLGGVYVF---LTPENRNRILNEILSVLKG  177 (179)
T ss_pred             -hhcCCEEEE---EccchhhHHHHHHHHHhcc
Confidence             233333332   5556666888888776653

>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]

Probab=98.71  E-value=1.1e-08  Score=70.17  Aligned_cols=123  Identities=17%  Similarity=0.192  Sum_probs=83.9

Q ss_pred             eCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEEEECCC----------HhHHHHHHHHHHHHHHhCC-CCceEEEEE
Q 030364           54 LNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITS----------MDSFERAKKWVQELQRQGN-PNLIMFLVA  122 (178)
Q Consensus        54 ~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~-~~~~~ivv~  122 (178)
                      ++-..+.+.+.|.+|+..-+..|.+++++.-.+++++.++.          ..-+++...++..+..... .+.++++..
T Consensus       194 fdl~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~nssVIlFL  273 (359)
T KOG0085|consen  194 FDLQKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFL  273 (359)
T ss_pred             cchhhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccccCCceEEEe
Confidence            34456778899999998888899999999888888776653          2334555566666666553 678899999


Q ss_pred             eCCCCccc----------------cccCHHHHHHHHHHc----C-----C-eEEEEeCCCCCCHHHHHHHHHhhcccccc
Q 030364          123 NKVDLEEK----------------RKVKNEEGELYAQEN----G-----L-SFLETSAKSAHNVNELFYEIGDCTECFSL  176 (178)
Q Consensus       123 nK~D~~~~----------------~~~~~~~~~~~~~~~----~-----~-~~~~~Sa~~~~~i~~~~~~l~~~i~~~~~  176 (178)
                      ||.|+.+.                .......+..|....    +     + ---.+.|.+.+||.-+|.++.+.+.+..+
T Consensus       274 NKkDlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkDtiLq~~L  353 (359)
T KOG0085|consen  274 NKKDLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLNL  353 (359)
T ss_pred             chhhhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHHHHHHhhh
Confidence            99997531                112233444443221    1     1 22457788999999999998887766544

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.70  E-value=5.1e-08  Score=64.29  Aligned_cols=57  Identities=19%  Similarity=0.286  Sum_probs=37.9

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCC
Q 030364            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAG   68 (178)
Q Consensus         8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g   68 (178)
                      ....+++++|.+|+|||||+|.+.+..... ..+..+++........+   ..+.++||||
T Consensus        98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~-~~~~~~~t~~~~~~~~~---~~~~liDtPG  154 (155)
T cd01849          98 KKSITVGVIGYPNVGKSSVINALLNKLKLK-VGNVPGTTTSQQEVKLD---NKIKLLDTPG  154 (155)
T ss_pred             ccCcEEEEEccCCCCHHHHHHHHHcccccc-ccCCCCcccceEEEEec---CCEEEEECCC
Confidence            346889999999999999999999765322 12222333333333333   2467999998

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]

Probab=98.68  E-value=5.3e-07  Score=62.96  Aligned_cols=155  Identities=13%  Similarity=0.094  Sum_probs=91.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhh-------ccchhhhcCC
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYH-------SLAPMYYRGA   83 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~-------~~~~~~~~~~   83 (178)
                      -+|-++|-|.+||||++..|.+-...-.....+..+...-.+.+++  -++++.|.||.-+-.       .......+.|
T Consensus        60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~g--aKiqlldlpgiiegakdgkgrg~qviavartc  137 (358)
T KOG1487|consen   60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKG--AKIQLLDLPGIIEGAKDGKGRGKQVIAVARTC  137 (358)
T ss_pred             eeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccc--cceeeecCcchhcccccCCCCccEEEEEeecc
Confidence            3899999999999999999986443211111222222233344555  457799999952211       1233456788


Q ss_pred             cEEEEEEECCCHhHHHHHHH-HHHHH-------------------------------------HH---------------
Q 030364           84 AAAVVVYDITSMDSFERAKK-WVQEL-------------------------------------QR---------------  110 (178)
Q Consensus        84 d~~i~v~d~~~~~s~~~~~~-~~~~~-------------------------------------~~---------------  110 (178)
                      +.+++|.|+..|-+-..+-+ .++-+                                     ..               
T Consensus       138 nli~~vld~~kp~~hk~~ie~eleg~girlnk~pp~i~~kkKdkgGInlt~~~LdlD~~rsil~eyR~hsAdi~Lr~DaT  217 (358)
T KOG1487|consen  138 NLIFIVLDVLKPLSHKKIIEKELEGFGIRLNKQPPNIGTKKKDKGGINLTGTHLDLDLQRSILSEYRIHSADIALRFDAT  217 (358)
T ss_pred             cEEEEEeeccCcccHHHHHHHhhhcceeeccCCCCCccccccccCceeeecchhhHHHHHHHHHHhhhcchheeeecCcc
Confidence            99999999886654443221 10000                                     00               


Q ss_pred             -------hCC--CCceEEEEEeCCCCccccccCHHHHHHHHHHcCC-eEEEEeCCCCCCHHHHHHHHHhhccccc
Q 030364          111 -------QGN--PNLIMFLVANKVDLEEKRKVKNEEGELYAQENGL-SFLETSAKSAHNVNELFYEIGDCTECFS  175 (178)
Q Consensus       111 -------~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~l~~~i~~~~  175 (178)
                             ...  ..+|.+.+.||.|...-.+..     .   .+.+ ..+++||..+.|++++++.+-+.+.-.+
T Consensus       218 ~DdLIdvVegnr~yVp~iyvLNkIdsISiEELd-----i---i~~iphavpISA~~~wn~d~lL~~mweyL~Lvr  284 (358)
T KOG1487|consen  218 ADDLIDVVEGNRIYVPCIYVLNKIDSISIEELD-----I---IYTIPHAVPISAHTGWNFDKLLEKMWEYLKLVR  284 (358)
T ss_pred             hhhhhhhhccCceeeeeeeeecccceeeeeccc-----e---eeeccceeecccccccchHHHHHHHhhcchheE
Confidence                   000  145667777777753322111     0   1222 5789999999999999998877665443

>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A

Probab=98.65  E-value=2.9e-06  Score=63.39  Aligned_cols=152  Identities=16%  Similarity=0.263  Sum_probs=88.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCcCCCC--------------ccCceeeeE----------EEEEEEe-CCeEEEEEEE
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDF--------------QESTIGAAF----------FTQVLSL-NEVTIKFDIW   64 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~~~~~~~--------------~~~~~~~~~----------~~~~~~~-~~~~~~~~i~   64 (178)
                      .+=|.|+|+..+|||||+++|...-..+.              ..+..|.+.          ....+.+ ++..+++.++
T Consensus        17 dIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVRLi   96 (492)
T PF09547_consen   17 DIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVRLI   96 (492)
T ss_pred             ceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEEEE
Confidence            45688999999999999999987321111              111122111          1222333 5667899999


Q ss_pred             eCCCchh-----h------hcc---c---------------hhhhc--CCcEEEEEEECC----CHhHHHHH-HHHHHHH
Q 030364           65 DTAGQER-----Y------HSL---A---------------PMYYR--GAAAAVVVYDIT----SMDSFERA-KKWVQEL  108 (178)
Q Consensus        65 d~~g~~~-----~------~~~---~---------------~~~~~--~~d~~i~v~d~~----~~~s~~~~-~~~~~~~  108 (178)
                      |+.|..-     |      +..   |               ...+.  +.=++++.-|-+    .++.+... .+.+.++
T Consensus        97 DCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~EL  176 (492)
T PF09547_consen   97 DCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIEEL  176 (492)
T ss_pred             eecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHHHH
Confidence            9998310     0      000   1               00011  122677766665    24444433 3445555


Q ss_pred             HHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCC--CCCHHHHHHH
Q 030364          109 QRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKS--AHNVNELFYE  166 (178)
Q Consensus       109 ~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~--~~~i~~~~~~  166 (178)
                      ...   ++|+++++|-.+-..  +-..+....+...++++++.+++..  .+.+..++..
T Consensus       177 k~i---gKPFvillNs~~P~s--~et~~L~~eL~ekY~vpVlpvnc~~l~~~DI~~Il~~  231 (492)
T PF09547_consen  177 KEI---GKPFVILLNSTKPYS--EETQELAEELEEKYDVPVLPVNCEQLREEDITRILEE  231 (492)
T ss_pred             HHh---CCCEEEEEeCCCCCC--HHHHHHHHHHHHHhCCcEEEeehHHcCHHHHHHHHHH
Confidence            554   899999999887432  2234556677778999999988754  3445544443

It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.

>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.64  E-value=1.3e-08  Score=72.44  Aligned_cols=164  Identities=13%  Similarity=0.119  Sum_probs=97.8

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHHhCc---CCCCccCcee--eeE-----------------------------EEEEE-
Q 030364            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQ---FFDFQESTIG--AAF-----------------------------FTQVL-   52 (178)
Q Consensus         8 ~~~~~i~v~G~~~~GKStl~~~l~~~~---~~~~~~~~~~--~~~-----------------------------~~~~~-   52 (178)
                      +-.++|.-+|+..-||||+++++.+-.   |..+.+...+  ..|                             ..... 
T Consensus        36 QATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~~  115 (466)
T KOG0466|consen   36 QATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDRP  115 (466)
T ss_pred             eeeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCcccC
Confidence            457899999999999999999987621   1000000000  000                             00000 


Q ss_pred             EeCCe---EEEEEEEeCCCchhhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcc
Q 030364           53 SLNEV---TIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEE  129 (178)
Q Consensus        53 ~~~~~---~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~  129 (178)
                      ...++   -..+.|.|+||++......-+-..-.|+.++++..++.-.-.+..+.+-.+....  =+.++++-||.|+..
T Consensus       116 g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~--LkhiiilQNKiDli~  193 (466)
T KOG0466|consen  116 GCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMK--LKHIIILQNKIDLIK  193 (466)
T ss_pred             CCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhh--hceEEEEechhhhhh
Confidence            00110   1346699999998766655555555678888887775322111122222222221  133788899999965


Q ss_pred             cccc--CHHHHHHHHHH---cCCeEEEEeCCCCCCHHHHHHHHHhhccc
Q 030364          130 KRKV--KNEEGELYAQE---NGLSFLETSAKSAHNVNELFYEIGDCTEC  173 (178)
Q Consensus       130 ~~~~--~~~~~~~~~~~---~~~~~~~~Sa~~~~~i~~~~~~l~~~i~~  173 (178)
                      +.+.  ..++.+.|.+.   .++|++++||.-..|++.+.+.|++.|-.
T Consensus       194 e~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPv  242 (466)
T KOG0466|consen  194 ESQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPV  242 (466)
T ss_pred             HHHHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCC
Confidence            4332  22344555554   35799999999999999999999998754

>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=98.62  E-value=2.3e-07  Score=66.96  Aligned_cols=86  Identities=15%  Similarity=0.071  Sum_probs=60.7

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCC---------------eEEEEEEEeCCCchhh
Q 030364            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNE---------------VTIKFDIWDTAGQERY   72 (178)
Q Consensus         8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~i~d~~g~~~~   72 (178)
                      ...+++.++|.|++||||++|.|+.....+..-|..+.+.....+.+.+               ....++++|+.|.-.-
T Consensus        18 ~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkG   97 (391)
T KOG1491|consen   18 GNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKG   97 (391)
T ss_pred             CCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccC
Confidence            3578999999999999999999999887766666666665555554422               3456889999985221


Q ss_pred             h----cc---chhhhcCCcEEEEEEECC
Q 030364           73 H----SL---APMYYRGAAAAVVVYDIT   93 (178)
Q Consensus        73 ~----~~---~~~~~~~~d~~i~v~d~~   93 (178)
                      .    .+   .-.-++.+|+++-|+++.
T Consensus        98 As~G~GLGN~FLs~iR~vDaifhVVr~f  125 (391)
T KOG1491|consen   98 ASAGEGLGNKFLSHIRHVDAIFHVVRAF  125 (391)
T ss_pred             cccCcCchHHHHHhhhhccceeEEEEec
Confidence            1    11   223357789988888754

>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]

Probab=98.62  E-value=1.9e-07  Score=65.27  Aligned_cols=120  Identities=16%  Similarity=0.216  Sum_probs=77.7

Q ss_pred             eEEEEEEEeCCCchhhhccchhhhcCCcEEEEEEECCCHh-------HHHHHHHH---HHHH-HHhCCCCceEEEEEeCC
Q 030364           57 VTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMD-------SFERAKKW---VQEL-QRQGNPNLIMFLVANKV  125 (178)
Q Consensus        57 ~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~-------s~~~~~~~---~~~~-~~~~~~~~~~ivv~nK~  125 (178)
                      ..++|+.+|.+|+..-+..|..++.+..++|||...++-+       +-..+++-   ++.+ ..+-.....+++.+||.
T Consensus       200 dkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlFLNKq  279 (379)
T KOG0099|consen  200 DKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILFLNKQ  279 (379)
T ss_pred             cccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEEecHH
Confidence            3467889999999999999999999999999999877421       12223322   2222 12223466789999999


Q ss_pred             CCccc------------------------------cccCHHHHHHHHHH-------------cCCeEEEEeCCCCCCHHH
Q 030364          126 DLEEK------------------------------RKVKNEEGELYAQE-------------NGLSFLETSAKSAHNVNE  162 (178)
Q Consensus       126 D~~~~------------------------------~~~~~~~~~~~~~~-------------~~~~~~~~Sa~~~~~i~~  162 (178)
                      |+...                              .......+..+.+.             +-|-+-.+.|.+.++|..
T Consensus       280 DllaeKi~Agk~~i~dyFpEf~~y~~p~da~~es~~d~~v~raK~fird~FlRiSta~~Dg~h~CYpHFTcAvDTenIrr  359 (379)
T KOG0099|consen  280 DLLAEKILAGKSKIEDYFPEFARYTTPEDATPESGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRR  359 (379)
T ss_pred             HHHHHHHHcchhhHHHhChHHhccCCccccCCCCCCChhhHHHHHhhhhhHhhhccccCCCceecccceeEeechHHHHH
Confidence            97420                              00111122222221             124456688999999999


Q ss_pred             HHHHHHhhcccccc
Q 030364          163 LFYEIGDCTECFSL  176 (178)
Q Consensus       163 ~~~~l~~~i~~~~~  176 (178)
                      +|+...+.|...++
T Consensus       360 VFnDcrdiIqr~hl  373 (379)
T KOG0099|consen  360 VFNDCRDIIQRMHL  373 (379)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99988887776554

>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]

Probab=98.61  E-value=2.4e-07  Score=73.08  Aligned_cols=118  Identities=22%  Similarity=0.198  Sum_probs=82.4

Q ss_pred             CCCceeEEEEEcCCCCCHHHHHHHHHhCcC------------C--CCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchh
Q 030364            6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQF------------F--DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER   71 (178)
Q Consensus         6 ~~~~~~~i~v~G~~~~GKStl~~~l~~~~~------------~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~   71 (178)
                      +.....+++++-+..-|||||...|....-            .  ...+.+.+.+.....+..-.+.+.+.++|.||+.+
T Consensus         5 ~~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvd   84 (887)
T KOG0467|consen    5 GSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVD   84 (887)
T ss_pred             CCCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccc
Confidence            344577999999999999999999886421            1  11223344444444455555678899999999999


Q ss_pred             hhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCC
Q 030364           72 YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDL  127 (178)
Q Consensus        72 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~  127 (178)
                      |........+-+|+.++.+|+..+-.-....-..+.+.    .+...++|+||+|.
T Consensus        85 f~sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~----~~~~~~lvinkidr  136 (887)
T KOG0467|consen   85 FSSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWI----EGLKPILVINKIDR  136 (887)
T ss_pred             hhhhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHH----ccCceEEEEehhhh
Confidence            99999999999999999999997543322211112221    34457899999993

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.61  E-value=2.3e-07  Score=60.15  Aligned_cols=76  Identities=20%  Similarity=0.225  Sum_probs=51.0

Q ss_pred             hhhcCCcEEEEEEECCCHhHHH--HHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCC
Q 030364           78 MYYRGAAAAVVVYDITSMDSFE--RAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAK  155 (178)
Q Consensus        78 ~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  155 (178)
                      ..++.+|++++|+|+.++.+..  .+..++..   . ..++|+++|+||+|+......  .......+..+.+++.+||+
T Consensus         7 ~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~---~-~~~k~~iivlNK~DL~~~~~~--~~~~~~~~~~~~~ii~iSa~   80 (141)
T cd01857           7 RVVERSDIVVQIVDARNPLLFRPPDLERYVKE---V-DPRKKNILLLNKADLLTEEQR--KAWAEYFKKEGIVVVFFSAL   80 (141)
T ss_pred             HHHhhCCEEEEEEEccCCcccCCHHHHHHHHh---c-cCCCcEEEEEechhcCCHHHH--HHHHHHHHhcCCeEEEEEec
Confidence            4578899999999999876433  23333322   2 257899999999998543321  22334444566889999998


Q ss_pred             CCCC
Q 030364          156 SAHN  159 (178)
Q Consensus       156 ~~~~  159 (178)
                      ++.+
T Consensus        81 ~~~~   84 (141)
T cd01857          81 KENA   84 (141)
T ss_pred             CCCc
Confidence            8754

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>KOG4273 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.61  E-value=9.4e-07  Score=61.50  Aligned_cols=156  Identities=19%  Similarity=0.274  Sum_probs=96.4

Q ss_pred             eeEEEEEcCCCC--CHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeE--EEEEEEeCCCchhhhccchhhhcCCcE
Q 030364           10 QVKLVLLGDMGT--GKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVT--IKFDIWDTAGQERYHSLAPMYYRGAAA   85 (178)
Q Consensus        10 ~~~i~v~G~~~~--GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~d~   85 (178)
                      ...++|+|-+|+  ||.+++.+|....+.....+...+.+...++..+...  +.+.+.-.. .+.+- ..........+
T Consensus         4 rp~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwtid~kyysadi~lcishic-de~~l-pn~~~a~pl~a   81 (418)
T KOG4273|consen    4 RPCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWTIDNKYYSADINLCISHIC-DEKFL-PNAEIAEPLQA   81 (418)
T ss_pred             CceEEEecccccccchHHHHHHhcchhheeeccccCceeeeceEecceeeecceeEEeeccc-chhcc-CCcccccceee
Confidence            346789999998  9999999998877776555555555555544322211  222222111 11111 11222344568


Q ss_pred             EEEEEECCCHhHHHHHHHHHHHHHHhCCCCce-EEEEEeCCCCcc-----------------------------------
Q 030364           86 AVVVYDITSMDSFERAKKWVQELQRQGNPNLI-MFLVANKVDLEE-----------------------------------  129 (178)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-~ivv~nK~D~~~-----------------------------------  129 (178)
                      ++++||.+....+..++.|+......   ... .+.++||.|...                                   
T Consensus        82 ~vmvfdlse~s~l~alqdwl~htdin---sfdillcignkvdrvphhlahdeyrrrl~kasdpsrdl~~di~dfgisete  158 (418)
T KOG4273|consen   82 FVMVFDLSEKSGLDALQDWLPHTDIN---SFDILLCIGNKVDRVPHHLAHDEYRRRLAKASDPSRDLMIDICDFGISETE  158 (418)
T ss_pred             EEEEEeccchhhhHHHHhhccccccc---cchhheecccccccccchhhhhHHHHHHHhhcCcchhHhhhhhhccccccc
Confidence            99999999999999999987643222   111 345578988531                                   


Q ss_pred             ---------ccccCHHHHHHHHHHcCCeEEEEeCCC------------CCCHHHHHHHHHhh
Q 030364          130 ---------KRKVKNEEGELYAQENGLSFLETSAKS------------AHNVNELFYEIGDC  170 (178)
Q Consensus       130 ---------~~~~~~~~~~~~~~~~~~~~~~~Sa~~------------~~~i~~~~~~l~~~  170 (178)
                               ..-........|+..+++.+++.++.+            ..|++.+|.+|-..
T Consensus       159 gssllgsedasldirga~lewc~e~~~efieacasn~dfd~c~~~dgdsqgverifgal~ah  220 (418)
T KOG4273|consen  159 GSSLLGSEDASLDIRGAALEWCLEHGFEFIEACASNEDFDECDDDDGDSQGVERIFGALNAH  220 (418)
T ss_pred             cccccccccchhhHHHHHHHHHHhcCceeeeecCCccccchhhccCcchhhHHHHHHHhhhc
Confidence                     000112245778889999999998743            24788888777543

>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain

Probab=98.59  E-value=2.2e-06  Score=59.98  Aligned_cols=98  Identities=10%  Similarity=0.034  Sum_probs=56.2

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHHhC--cCCCCcc-CceeeeEEEEEEEeC-CeEEEEEEEeCCCchhhhc------cc
Q 030364            7 KNIQVKLVLLGDMGTGKTSLVLRFVKG--QFFDFQE-STIGAAFFTQVLSLN-EVTIKFDIWDTAGQERYHS------LA   76 (178)
Q Consensus         7 ~~~~~~i~v~G~~~~GKStl~~~l~~~--~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~i~d~~g~~~~~~------~~   76 (178)
                      ..+..-|.|+|++++|||+|+|.|.+.  .+..... ...+........... +....+.++||+|......      ..
T Consensus         4 ~~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~   83 (224)
T cd01851           4 GFPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDAR   83 (224)
T ss_pred             CCCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhH
Confidence            345678999999999999999999987  4432111 111111111111211 2346788999999643322      12


Q ss_pred             hhhhcC--CcEEEEEEECCC-HhHHHHHHHH
Q 030364           77 PMYYRG--AAAAVVVYDITS-MDSFERAKKW  104 (178)
Q Consensus        77 ~~~~~~--~d~~i~v~d~~~-~~s~~~~~~~  104 (178)
                      ...+..  ++.+|+..+... ....+.+...
T Consensus        84 ~~~l~~llss~~i~n~~~~~~~~~~~~l~~~  114 (224)
T cd01851          84 LFALATLLSSVLIYNSWETILGDDLAALMGL  114 (224)
T ss_pred             HHHHHHHHhCEEEEeccCcccHHHHHHHHHH
Confidence            223333  788888877764 3344444333

Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein

>PRK12288 GTPase RsgA; Reviewed

Probab=98.58  E-value=1.2e-07  Score=70.23  Aligned_cols=59  Identities=15%  Similarity=0.238  Sum_probs=37.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCcCCCC--ccC----ceeeeEEEEEEEeCCeEEEEEEEeCCCchhhh
Q 030364           12 KLVLLGDMGTGKTSLVLRFVKGQFFDF--QES----TIGAAFFTQVLSLNEVTIKFDIWDTAGQERYH   73 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~~~~~~~--~~~----~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~   73 (178)
                      .++++|.+|+|||||+|+|.+......  ...    ..-++.....+.+++..   .++||||...+.
T Consensus       207 i~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~~---~liDTPGir~~~  271 (347)
T PRK12288        207 ISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHGG---DLIDSPGVREFG  271 (347)
T ss_pred             CEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCCC---EEEECCCCCccc
Confidence            378999999999999999997643221  111    11133344445554332   389999975443

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=98.57  E-value=9.2e-08  Score=70.02  Aligned_cols=141  Identities=16%  Similarity=0.163  Sum_probs=77.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCcCCCC----------cc-----------CceeeeEEEEEEE-------------eC
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDF----------QE-----------STIGAAFFTQVLS-------------LN   55 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~~~~~~~----------~~-----------~~~~~~~~~~~~~-------------~~   55 (178)
                      .-.++++|++|+||||++..|...-....          +.           ...+..+......             ..
T Consensus       114 ~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~~  193 (318)
T PRK10416        114 PFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAAK  193 (318)
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHHH
Confidence            45788999999999999988865211000          00           0011111111000             01


Q ss_pred             CeEEEEEEEeCCCchhhhcc----chhh--------hcCCcEEEEEEECCCHh-HHHHHHHHHHHHHHhCCCCceEEEEE
Q 030364           56 EVTIKFDIWDTAGQERYHSL----APMY--------YRGAAAAVVVYDITSMD-SFERAKKWVQELQRQGNPNLIMFLVA  122 (178)
Q Consensus        56 ~~~~~~~i~d~~g~~~~~~~----~~~~--------~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~ivv~  122 (178)
                      ...+.+.++||||.......    ...+        -...+..++|+|++... .+...    .......   .+.-+|+
T Consensus       194 ~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a----~~f~~~~---~~~giIl  266 (318)
T PRK10416        194 ARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQA----KAFHEAV---GLTGIIL  266 (318)
T ss_pred             hCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHH----HHHHhhC---CCCEEEE
Confidence            23467889999997432211    1111        12467889999999643 23322    2222211   2347889


Q ss_pred             eCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHH
Q 030364          123 NKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNEL  163 (178)
Q Consensus       123 nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~  163 (178)
                      ||.|... .   .-.........++|+..++  +|++++++
T Consensus       267 TKlD~t~-~---~G~~l~~~~~~~~Pi~~v~--~Gq~~~Dl  301 (318)
T PRK10416        267 TKLDGTA-K---GGVVFAIADELGIPIKFIG--VGEGIDDL  301 (318)
T ss_pred             ECCCCCC-C---ccHHHHHHHHHCCCEEEEe--CCCChhhC
Confidence            9999532 2   1233344556789988888  77777665

>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]

Probab=98.57  E-value=1.3e-07  Score=69.29  Aligned_cols=155  Identities=15%  Similarity=0.220  Sum_probs=84.1

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCcCCC------------------CccCceeeeEEE-----EEEEe-----------
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFD------------------FQESTIGAAFFT-----QVLSL-----------   54 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~~------------------~~~~~~~~~~~~-----~~~~~-----------   54 (178)
                      .+.+|+|+|+..+|||||+-.|++++...                  -..+..+.+...     ..++.           
T Consensus       132 ~E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWv  211 (641)
T KOG0463|consen  132 IEARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWV  211 (641)
T ss_pred             eeEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCcccce
Confidence            47899999999999999998887754211                  112222222111     11111           


Q ss_pred             ---CCeEEEEEEEeCCCchhhhccchhh--hcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcc
Q 030364           55 ---NEVTIKFDIWDTAGQERYHSLAPMY--YRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEE  129 (178)
Q Consensus        55 ---~~~~~~~~i~d~~g~~~~~~~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~  129 (178)
                         .+..-.+.|+|..|+++|-.....-  -.-.|...+++-++-... ...++.+-...   .-++|++||.+|+|+..
T Consensus       212 kIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGIi-GmTKEHLgLAL---aL~VPVfvVVTKIDMCP  287 (641)
T KOG0463|consen  212 KICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGII-GMTKEHLGLAL---ALHVPVFVVVTKIDMCP  287 (641)
T ss_pred             eeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccce-eccHHhhhhhh---hhcCcEEEEEEeeccCc
Confidence               1222346799999999886533211  123455566665553211 11111111111   13677888888888754


Q ss_pred             ccccCHH----------------------------HHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Q 030364          130 KRKVKNE----------------------------EGELYAQENGLSFLETSAKSAHNVNELFYEI  167 (178)
Q Consensus       130 ~~~~~~~----------------------------~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  167 (178)
                      +....+.                            .+..|..+.-||+|++|..+|++++.+.-.|
T Consensus       288 ANiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLkmFL  353 (641)
T KOG0463|consen  288 ANILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLKMFL  353 (641)
T ss_pred             HHHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHHHHH
Confidence            3322111                            1112222334699999999999988765443

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.56  E-value=2.4e-07  Score=66.83  Aligned_cols=99  Identities=17%  Similarity=0.113  Sum_probs=64.5

Q ss_pred             CCCch-hhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHH
Q 030364           66 TAGQE-RYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQE  144 (178)
Q Consensus        66 ~~g~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~  144 (178)
                      .|||. .........++.+|++++|+|+.++.+.+.. .+.+.+     .+.|+++|+||+|+.+....  .........
T Consensus         4 fpgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~-~i~~~l-----~~kp~IiVlNK~DL~~~~~~--~~~~~~~~~   75 (276)
T TIGR03596         4 FPGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRNP-MIDEIR-----GNKPRLIVLNKADLADPAVT--KQWLKYFEE   75 (276)
T ss_pred             ChHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCCh-hHHHHH-----CCCCEEEEEEccccCCHHHH--HHHHHHHHH
Confidence            46653 2334456678999999999999876443221 111112     25789999999998542211  111112223


Q ss_pred             cCCeEEEEeCCCCCCHHHHHHHHHhhcc
Q 030364          145 NGLSFLETSAKSAHNVNELFYEIGDCTE  172 (178)
Q Consensus       145 ~~~~~~~~Sa~~~~~i~~~~~~l~~~i~  172 (178)
                      .+.+++.+||+++.|++++.+.|.+.+.
T Consensus        76 ~~~~vi~iSa~~~~gi~~L~~~i~~~~~  103 (276)
T TIGR03596        76 KGIKALAINAKKGKGVKKIIKAAKKLLK  103 (276)
T ss_pred             cCCeEEEEECCCcccHHHHHHHHHHHHH
Confidence            4578999999999999999998877654

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>PRK12289 GTPase RsgA; Reviewed

Probab=98.55  E-value=1.5e-07  Score=69.78  Aligned_cols=55  Identities=24%  Similarity=0.294  Sum_probs=36.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCcCCCCccCcee-------eeEEEEEEEeCCeEEEEEEEeCCCch
Q 030364           12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIG-------AAFFTQVLSLNEVTIKFDIWDTAGQE   70 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~i~d~~g~~   70 (178)
                      .++++|++|+|||||+|.|.+..... .....+       ++.....+..++..   .++||||..
T Consensus       174 i~v~iG~SgVGKSSLIN~L~~~~~~~-t~~vs~~~~rGrHTT~~~~l~~l~~g~---~liDTPG~~  235 (352)
T PRK12289        174 ITVVAGPSGVGKSSLINRLIPDVELR-VGKVSGKLGRGRHTTRHVELFELPNGG---LLADTPGFN  235 (352)
T ss_pred             eEEEEeCCCCCHHHHHHHHcCccccc-cccccCCCCCCCCcCceeEEEECCCCc---EEEeCCCcc
Confidence            37999999999999999999754322 111112       34444555554332   489999964

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.53  E-value=3.3e-07  Score=66.48  Aligned_cols=99  Identities=18%  Similarity=0.164  Sum_probs=64.6

Q ss_pred             CCCchh-hhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHH
Q 030364           66 TAGQER-YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQE  144 (178)
Q Consensus        66 ~~g~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~  144 (178)
                      .|||.. ........+..+|++++|+|+.++.+.+.  ..+....    .+.|+++|+||+|+.+....  .....+.+.
T Consensus         7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~----~~kp~iiVlNK~DL~~~~~~--~~~~~~~~~   78 (287)
T PRK09563          7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSEN--PMIDKII----GNKPRLLILNKSDLADPEVT--KKWIEYFEE   78 (287)
T ss_pred             cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHh----CCCCEEEEEEchhcCCHHHH--HHHHHHHHH
Confidence            567642 23344567889999999999987644322  1111111    26789999999998532111  111222234


Q ss_pred             cCCeEEEEeCCCCCCHHHHHHHHHhhcc
Q 030364          145 NGLSFLETSAKSAHNVNELFYEIGDCTE  172 (178)
Q Consensus       145 ~~~~~~~~Sa~~~~~i~~~~~~l~~~i~  172 (178)
                      .+.+++.+|++++.|++++.+.|.+.+.
T Consensus        79 ~~~~vi~vSa~~~~gi~~L~~~l~~~l~  106 (287)
T PRK09563         79 QGIKALAINAKKGQGVKKILKAAKKLLK  106 (287)
T ss_pred             cCCeEEEEECCCcccHHHHHHHHHHHHH
Confidence            4678899999999999999998877653

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=98.52  E-value=1.5e-07  Score=67.59  Aligned_cols=94  Identities=18%  Similarity=0.115  Sum_probs=55.1

Q ss_pred             EEEEEEEeCCCchhhhccc----h---hh-----hcCCcEEEEEEECCCHh-HHHHHHHHHHHHHHhCCCCceEEEEEeC
Q 030364           58 TIKFDIWDTAGQERYHSLA----P---MY-----YRGAAAAVVVYDITSMD-SFERAKKWVQELQRQGNPNLIMFLVANK  124 (178)
Q Consensus        58 ~~~~~i~d~~g~~~~~~~~----~---~~-----~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~ivv~nK  124 (178)
                      .+.+.++||||........    .   ..     -..+|..++|+|++... .+...    ..+.+..   .+.-+|+||
T Consensus       154 ~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~----~~f~~~~---~~~g~IlTK  226 (272)
T TIGR00064       154 NIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQA----KVFNEAV---GLTGIILTK  226 (272)
T ss_pred             CCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHH----HHHHhhC---CCCEEEEEc
Confidence            4678899999975332211    1   11     12488999999998532 33322    2222221   135788999


Q ss_pred             CCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Q 030364          125 VDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELF  164 (178)
Q Consensus       125 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  164 (178)
                      .|.....    -.........+.|+..++  +|++++++-
T Consensus       227 lDe~~~~----G~~l~~~~~~~~Pi~~~~--~Gq~~~dl~  260 (272)
T TIGR00064       227 LDGTAKG----GIILSIAYELKLPIKFIG--VGEKIDDLA  260 (272)
T ss_pred             cCCCCCc----cHHHHHHHHHCcCEEEEe--CCCChHhCc
Confidence            9964321    123334445678888887  777776653

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>PRK01889 GTPase RsgA; Reviewed

Probab=98.52  E-value=6.8e-07  Score=66.64  Aligned_cols=84  Identities=15%  Similarity=0.151  Sum_probs=58.5

Q ss_pred             hcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHH-HcCCeEEEEeCCCCC
Q 030364           80 YRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQ-ENGLSFLETSAKSAH  158 (178)
Q Consensus        80 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~  158 (178)
                      ..++|.+++|+++..+-....+.+++..+...   +.+.++|+||+|+.+...   +....+.. ..+.+++.+|++++.
T Consensus       110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~~---~i~piIVLNK~DL~~~~~---~~~~~~~~~~~g~~Vi~vSa~~g~  183 (356)
T PRK01889        110 AANVDTVFIVCSLNHDFNLRRIERYLALAWES---GAEPVIVLTKADLCEDAE---EKIAEVEALAPGVPVLAVSALDGE  183 (356)
T ss_pred             EEeCCEEEEEEecCCCCChhHHHHHHHHHHHc---CCCEEEEEEChhcCCCHH---HHHHHHHHhCCCCcEEEEECCCCc
Confidence            57899999999997443444555555554443   567799999999965311   11122222 356899999999999


Q ss_pred             CHHHHHHHHHh
Q 030364          159 NVNELFYEIGD  169 (178)
Q Consensus       159 ~i~~~~~~l~~  169 (178)
                      |++++..+|..
T Consensus       184 gl~~L~~~L~~  194 (356)
T PRK01889        184 GLDVLAAWLSG  194 (356)
T ss_pred             cHHHHHHHhhc
Confidence            99999998853

>COG1162 Predicted GTPases [General function prediction only]

Probab=98.51  E-value=2e-07  Score=66.76  Aligned_cols=59  Identities=22%  Similarity=0.235  Sum_probs=40.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCc------CCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhh
Q 030364           12 KLVLLGDMGTGKTSLVLRFVKGQ------FFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYH   73 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~   73 (178)
                      ..+++|++|+|||||+|+|....      .........-++.....+.+++...   ++||||...+.
T Consensus       166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG~---iiDTPGf~~~~  230 (301)
T COG1162         166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGGW---IIDTPGFRSLG  230 (301)
T ss_pred             eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCCE---EEeCCCCCccC
Confidence            67889999999999999998632      2222223333556667777754333   89999975443

>cd03112 CobW_like The function of this protein family is unkown

Probab=98.51  E-value=8.5e-07  Score=58.64  Aligned_cols=64  Identities=13%  Similarity=0.107  Sum_probs=36.9

Q ss_pred             EEEEEEEeCCCchhhhccchh--------hhcCCcEEEEEEECCCHhH-HHHHHHHHHHHHHhCCCCceEEEEEeCCCC
Q 030364           58 TIKFDIWDTAGQERYHSLAPM--------YYRGAAAAVVVYDITSMDS-FERAKKWVQELQRQGNPNLIMFLVANKVDL  127 (178)
Q Consensus        58 ~~~~~i~d~~g~~~~~~~~~~--------~~~~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~  127 (178)
                      .....++|++|-.........        ..-..|.+++++|+.+... +.+...+..++...      =++++||+|+
T Consensus        86 ~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~a------d~ivlnk~dl  158 (158)
T cd03112          86 AFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAFA------DRILLNKTDL  158 (158)
T ss_pred             CCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHHC------CEEEEecccC
Confidence            356678999996433322221        2335789999999875332 22222233333322      2779999995

The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.

>PRK13796 GTPase YqeH; Provisional

Probab=98.49  E-value=2.7e-07  Score=68.98  Aligned_cols=57  Identities=19%  Similarity=0.247  Sum_probs=39.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCcCCC----CccCceeeeEEEEEEEeCCeEEEEEEEeCCCc
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVKGQFFD----FQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ   69 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~   69 (178)
                      ..++.++|.+|+|||||+|+|.......    ...+..+++.....+.+++.   ..++||||.
T Consensus       160 ~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~~---~~l~DTPGi  220 (365)
T PRK13796        160 GRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDDG---SFLYDTPGI  220 (365)
T ss_pred             CCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCCC---cEEEECCCc
Confidence            3479999999999999999998643211    12344455555555555443   259999996

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.49  E-value=4.4e-07  Score=67.80  Aligned_cols=57  Identities=19%  Similarity=0.241  Sum_probs=38.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCcCC----CCccCceeeeEEEEEEEeCCeEEEEEEEeCCCch
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVKGQFF----DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE   70 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~   70 (178)
                      .+++++|.+|+|||||+|+|.+....    ....+..+++.....+..++.   +.++||||..
T Consensus       155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~~~---~~l~DtPG~~  215 (360)
T TIGR03597       155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLDDG---HSLYDTPGII  215 (360)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeCCC---CEEEECCCCC
Confidence            58999999999999999999975321    123334444544445555332   3599999964

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>PRK13796 GTPase YqeH; Provisional

Probab=98.48  E-value=1.3e-06  Score=65.36  Aligned_cols=93  Identities=30%  Similarity=0.364  Sum_probs=60.0

Q ss_pred             hhhccchhhhcCCc-EEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHH----HHHHc
Q 030364           71 RYHSLAPMYYRGAA-AAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGEL----YAQEN  145 (178)
Q Consensus        71 ~~~~~~~~~~~~~d-~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~----~~~~~  145 (178)
                      .|...... +...+ .+++|+|+.+..     ..|...+.+.. .+.|+++|+||+|+... ....+....    +++..
T Consensus        58 ~~~~~l~~-i~~~~~lIv~VVD~~D~~-----~s~~~~L~~~~-~~kpviLViNK~DLl~~-~~~~~~i~~~l~~~~k~~  129 (365)
T PRK13796         58 DFLKLLNG-IGDSDALVVNVVDIFDFN-----GSWIPGLHRFV-GNNPVLLVGNKADLLPK-SVKKNKVKNWLRQEAKEL  129 (365)
T ss_pred             HHHHHHHh-hcccCcEEEEEEECccCC-----CchhHHHHHHh-CCCCEEEEEEchhhCCC-ccCHHHHHHHHHHHHHhc
Confidence            44443333 34444 999999998743     22333343322 36789999999999642 222233332    34455


Q ss_pred             CC---eEEEEeCCCCCCHHHHHHHHHhhc
Q 030364          146 GL---SFLETSAKSAHNVNELFYEIGDCT  171 (178)
Q Consensus       146 ~~---~~~~~Sa~~~~~i~~~~~~l~~~i  171 (178)
                      ++   .++.+||+++.|++++++.|.+..
T Consensus       130 g~~~~~v~~vSAk~g~gI~eL~~~I~~~~  158 (365)
T PRK13796        130 GLRPVDVVLISAQKGHGIDELLEAIEKYR  158 (365)
T ss_pred             CCCcCcEEEEECCCCCCHHHHHHHHHHhc
Confidence            65   689999999999999999997653

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=98.47  E-value=4.5e-07  Score=64.23  Aligned_cols=57  Identities=21%  Similarity=0.169  Sum_probs=36.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCcCCCC--ccC----ceeeeEEEEEEEeCCeEEEEEEEeCCCchh
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVKGQFFDF--QES----TIGAAFFTQVLSLNEVTIKFDIWDTAGQER   71 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~~~~~~~--~~~----~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~   71 (178)
                      ..++++|.+|+|||||+|+|.+......  ...    ...++.....+.+.+.    .++||||...
T Consensus       121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l~~~----~liDtPG~~~  183 (245)
T TIGR00157       121 RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHFHGG----LIADTPGFNE  183 (245)
T ss_pred             CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEcCCc----EEEeCCCccc
Confidence            4688999999999999999997543221  111    1113333444444332    4999999743

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>PRK14974 cell division protein FtsY; Provisional

Probab=98.46  E-value=2.4e-07  Score=68.14  Aligned_cols=93  Identities=20%  Similarity=0.144  Sum_probs=54.1

Q ss_pred             EEEEEEeCCCchhhhc----cchhh--hcCCcEEEEEEECCCHhH-HHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccc
Q 030364           59 IKFDIWDTAGQERYHS----LAPMY--YRGAAAAVVVYDITSMDS-FERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR  131 (178)
Q Consensus        59 ~~~~i~d~~g~~~~~~----~~~~~--~~~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~  131 (178)
                      +.+.++||+|......    ....+  ....|..++|+|+..... .+.+    ..+....   ..--+++||.|.... 
T Consensus       223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a----~~f~~~~---~~~giIlTKlD~~~~-  294 (336)
T PRK14974        223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQA----REFNEAV---GIDGVILTKVDADAK-  294 (336)
T ss_pred             CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHH----HHHHhcC---CCCEEEEeeecCCCC-
Confidence            5688999999743211    11111  235788999999986432 2222    2222211   124788999996431 


Q ss_pred             ccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Q 030364          132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELF  164 (178)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  164 (178)
                       .  -.....+...+.|+..++  +|++++++.
T Consensus       295 -~--G~~ls~~~~~~~Pi~~i~--~Gq~v~Dl~  322 (336)
T PRK14974        295 -G--GAALSIAYVIGKPILFLG--VGQGYDDLI  322 (336)
T ss_pred             -c--cHHHHHHHHHCcCEEEEe--CCCChhhcc
Confidence             1  123333445688888887  788887764

>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]

Probab=98.46  E-value=3e-08  Score=73.43  Aligned_cols=117  Identities=17%  Similarity=0.182  Sum_probs=88.4

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCc--------CCC--------CccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhh
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVKGQ--------FFD--------FQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERY   72 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~~~--------~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~   72 (178)
                      +..+|.++.+-.+||||.-.+++.-.        ...        ......+.+.+...++++.+.+.+.++|+||+-+|
T Consensus        36 kirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf  115 (753)
T KOG0464|consen   36 KIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDF  115 (753)
T ss_pred             hhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceE
Confidence            46689999999999999998876411        110        02334556777788888888899999999999999


Q ss_pred             hccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcc
Q 030364           73 HSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEE  129 (178)
Q Consensus        73 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~  129 (178)
                      .-....+++-.|+++.|||++-.-....+.-|.+    ....+.|....+||+|...
T Consensus       116 ~leverclrvldgavav~dasagve~qtltvwrq----adk~~ip~~~finkmdk~~  168 (753)
T KOG0464|consen  116 RLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQ----ADKFKIPAHCFINKMDKLA  168 (753)
T ss_pred             EEEHHHHHHHhcCeEEEEeccCCcccceeeeehh----ccccCCchhhhhhhhhhhh
Confidence            9999999999999999999996544444434432    2234778888899999743

>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.45  E-value=3.3e-07  Score=70.74  Aligned_cols=116  Identities=18%  Similarity=0.134  Sum_probs=80.3

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCcCC-----C-----------CccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhh
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFF-----D-----------FQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERY   72 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~-----~-----------~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~   72 (178)
                      +..+|.+.-+-.+||||+-++++...-.     +           ......+.+.+..........+.+.++||||+-+|
T Consensus        38 k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDF  117 (721)
T KOG0465|consen   38 KIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDF  117 (721)
T ss_pred             hhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeE
Confidence            4668888899999999999887652110     0           01122233344444444555788999999999999


Q ss_pred             hccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCc
Q 030364           73 HSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLE  128 (178)
Q Consensus        73 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~  128 (178)
                      .-.....++-.|+.|+++++..+-.-. ....++.+.++   ++|.+..+||+|..
T Consensus       118 T~EVeRALrVlDGaVlvl~aV~GVqsQ-t~tV~rQ~~ry---~vP~i~FiNKmDRm  169 (721)
T KOG0465|consen  118 TFEVERALRVLDGAVLVLDAVAGVESQ-TETVWRQMKRY---NVPRICFINKMDRM  169 (721)
T ss_pred             EEEehhhhhhccCeEEEEEcccceehh-hHHHHHHHHhc---CCCeEEEEehhhhc
Confidence            888889999999999999988643222 22333445544   78899999999963

>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]

Probab=98.44  E-value=9.6e-06  Score=62.48  Aligned_cols=96  Identities=17%  Similarity=0.189  Sum_probs=59.1

Q ss_pred             EEEEEeCCCc-------------hhhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCC
Q 030364           60 KFDIWDTAGQ-------------ERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVD  126 (178)
Q Consensus        60 ~~~i~d~~g~-------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D  126 (178)
                      .+.+.|.||.             +....+..++..+.+++|+|+--.+-+.....  .-..+.+....+...|+|++|.|
T Consensus       413 RMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDAERSn--VTDLVsq~DP~GrRTIfVLTKVD  490 (980)
T KOG0447|consen  413 RMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDAERSI--VTDLVSQMDPHGRRTIFVLTKVD  490 (980)
T ss_pred             eeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcchhhhh--HHHHHHhcCCCCCeeEEEEeecc
Confidence            4568999993             22334567888999999999865543322221  11334444445777899999999


Q ss_pred             CccccccCHHHHHHHHHHcC-----CeEEEEeCCCC
Q 030364          127 LEEKRKVKNEEGELYAQENG-----LSFLETSAKSA  157 (178)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~Sa~~~  157 (178)
                      +.+.........+......-     +.||.+..=.|
T Consensus       491 lAEknlA~PdRI~kIleGKLFPMKALGYfaVVTGrG  526 (980)
T KOG0447|consen  491 LAEKNVASPSRIQQIIEGKLFPMKALGYFAVVTGKG  526 (980)
T ss_pred             hhhhccCCHHHHHHHHhcCccchhhcceeEEEecCC
Confidence            98765555555555544322     35666654444

>TIGR03348 VI_IcmF type VI secretion protein IcmF

Probab=98.44  E-value=1.3e-06  Score=74.28  Aligned_cols=112  Identities=21%  Similarity=0.214  Sum_probs=66.3

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCcCCCCc----cCceee-eEEEEEEEeCCeEEEEEEEeCCCch--------hhhccchhh
Q 030364           13 LVLLGDMGTGKTSLVLRFVKGQFFDFQ----ESTIGA-AFFTQVLSLNEVTIKFDIWDTAGQE--------RYHSLAPMY   79 (178)
Q Consensus        13 i~v~G~~~~GKStl~~~l~~~~~~~~~----~~~~~~-~~~~~~~~~~~~~~~~~i~d~~g~~--------~~~~~~~~~   79 (178)
                      .+|+|++|+||||+++.- +-.++-..    ..+.+. ....+...+.+.   ..++|++|.-        .....|..+
T Consensus       114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~wwf~~~---avliDtaG~y~~~~~~~~~~~~~W~~f  189 (1169)
T TIGR03348       114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDWWFTDE---AVLIDTAGRYTTQDSDPEEDAAAWLGF  189 (1169)
T ss_pred             EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccceEecCC---EEEEcCCCccccCCCcccccHHHHHHH
Confidence            589999999999999875 33332110    011110 011122223332   3489999942        112233333


Q ss_pred             h---------cCCcEEEEEEECCCH-----hH----HHHHHHHHHHHHHhCCCCceEEEEEeCCCCc
Q 030364           80 Y---------RGAAAAVVVYDITSM-----DS----FERAKKWVQELQRQGNPNLIMFLVANKVDLE  128 (178)
Q Consensus        80 ~---------~~~d~~i~v~d~~~~-----~s----~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~  128 (178)
                      +         +..|++|+++|+.+-     +.    -..++..+.++.....-..|+.|++||+|+.
T Consensus       190 L~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll  256 (1169)
T TIGR03348       190 LGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLL  256 (1169)
T ss_pred             HHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhh
Confidence            2         357999999998842     11    1234455566666666799999999999975

Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.

>COG1162 Predicted GTPases [General function prediction only]

Probab=98.37  E-value=5.2e-06  Score=59.66  Aligned_cols=95  Identities=17%  Similarity=0.142  Sum_probs=69.0

Q ss_pred             hhcCCcEEEEEEECCCHh-HHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCC
Q 030364           79 YYRGAAAAVVVYDITSMD-SFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSA  157 (178)
Q Consensus        79 ~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  157 (178)
                      -..+.|-.++++++.+|+ +...+.+++-....   .+...++++||+|+.+..+...++........+.+++.+|++++
T Consensus        76 ~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~---~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~~~s~~~~  152 (301)
T COG1162          76 PVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEA---GGIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVLFVSAKNG  152 (301)
T ss_pred             cccccceEEEEEeccCCCCCHHHHHHHHHHHHH---cCCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeEEEecCcCc
Confidence            345577788888888776 45555555444433   35567888999999765554434556666778999999999999


Q ss_pred             CCHHHHHHHHHhhcccccc
Q 030364          158 HNVNELFYEIGDCTECFSL  176 (178)
Q Consensus       158 ~~i~~~~~~l~~~i~~~~~  176 (178)
                      .|++++...+...+..+-.
T Consensus       153 ~~~~~l~~~l~~~~svl~G  171 (301)
T COG1162         153 DGLEELAELLAGKITVLLG  171 (301)
T ss_pred             ccHHHHHHHhcCCeEEEEC
Confidence            9999999999887765533

>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]

Probab=98.36  E-value=1.3e-06  Score=64.53  Aligned_cols=158  Identities=17%  Similarity=0.184  Sum_probs=92.4

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHHhCc----------C-------------CCCccCc------eeeeEEEEEEEeCCe
Q 030364            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQ----------F-------------FDFQEST------IGAAFFTQVLSLNEV   57 (178)
Q Consensus         7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~----------~-------------~~~~~~~------~~~~~~~~~~~~~~~   57 (178)
                      +...++++++|...+||||+-..+....          +             ...+..+      .+.+.....-.+.-.
T Consensus        76 pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte  155 (501)
T KOG0459|consen   76 PKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETE  155 (501)
T ss_pred             CCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEec
Confidence            3558999999999999999876654410          0             0000011      011111111111222


Q ss_pred             EEEEEEEeCCCchhhhccchhhhcCCcEEEEEEECCCHh---HHHHHH--HHHHHHHHhCCCCceEEEEEeCCCCccccc
Q 030364           58 TIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMD---SFERAK--KWVQELQRQGNPNLIMFLVANKVDLEEKRK  132 (178)
Q Consensus        58 ~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~--~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~  132 (178)
                      .-.+.+.|+||+..|......-...+|.-++|+++...+   .|+.-.  +..-.+.+. ..-...++++||+|-+....
T Consensus       156 ~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt-~gv~~lVv~vNKMddPtvnW  234 (501)
T KOG0459|consen  156 NKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT-AGVKHLIVLINKMDDPTVNW  234 (501)
T ss_pred             ceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHh-hccceEEEEEEeccCCccCc
Confidence            345779999999888887777778899999999986432   233321  112222222 23345788999999754221


Q ss_pred             c---C---HHHHHHHHHHcC------CeEEEEeCCCCCCHHHHHH
Q 030364          133 V---K---NEEGELYAQENG------LSFLETSAKSAHNVNELFY  165 (178)
Q Consensus       133 ~---~---~~~~~~~~~~~~------~~~~~~Sa~~~~~i~~~~~  165 (178)
                      -   .   .++...|.+..+      ..++++|..+|.++++...
T Consensus       235 s~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~  279 (501)
T KOG0459|consen  235 SNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD  279 (501)
T ss_pred             chhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence            1   1   122333444333      4799999999999987654

>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]

Probab=98.33  E-value=8.7e-07  Score=67.23  Aligned_cols=56  Identities=23%  Similarity=0.224  Sum_probs=46.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCc
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ   69 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~   69 (178)
                      .+.|.++|-|||||||+||.|.+.+... .+.|+|.+....++.+..   .+.+.|+||.
T Consensus       314 ~vtVG~VGYPNVGKSSTINaLvG~KkVs-VS~TPGkTKHFQTi~ls~---~v~LCDCPGL  369 (562)
T KOG1424|consen  314 VVTVGFVGYPNVGKSSTINALVGRKKVS-VSSTPGKTKHFQTIFLSP---SVCLCDCPGL  369 (562)
T ss_pred             eeEEEeecCCCCchhHHHHHHhcCceee-eecCCCCcceeEEEEcCC---CceecCCCCc
Confidence            6999999999999999999999988765 677777777666666655   3568999994

>PRK13695 putative NTPase; Provisional

Probab=98.33  E-value=3e-05  Score=52.12  Aligned_cols=22  Identities=41%  Similarity=0.699  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      ++|++.|.+|+|||||+..+.+
T Consensus         1 ~~i~ltG~~G~GKTTll~~i~~   22 (174)
T PRK13695          1 MKIGITGPPGVGKTTLVLKIAE   22 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999998654

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.29  E-value=2.1e-06  Score=62.22  Aligned_cols=59  Identities=19%  Similarity=0.240  Sum_probs=37.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCcCCCCc--c----CceeeeEEEEEEEeCCeEEEEEEEeCCCchhh
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQ--E----STIGAAFFTQVLSLNEVTIKFDIWDTAGQERY   72 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~~~~~~~~--~----~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~   72 (178)
                      ..++++|++|+|||||+|.|.+.......  .    ....++.....+...+..   .++|+||...+
T Consensus       162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~~---~liDtPG~~~~  226 (287)
T cd01854         162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGGG---LLIDTPGFREF  226 (287)
T ss_pred             ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCCC---EEEECCCCCcc
Confidence            47899999999999999999975432211  1    111123333444444322   48999998554

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>PRK00098 GTPase RsgA; Reviewed

Probab=98.27  E-value=2.2e-06  Score=62.52  Aligned_cols=57  Identities=19%  Similarity=0.156  Sum_probs=35.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCcCCCCccCce-------eeeEEEEEEEeCCeEEEEEEEeCCCchh
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTI-------GAAFFTQVLSLNEVTIKFDIWDTAGQER   71 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~i~d~~g~~~   71 (178)
                      ..++++|++|+|||||+|.|.+...... ....       .++.....+..++.   ..++|+||...
T Consensus       165 k~~~~~G~sgvGKStlin~l~~~~~~~~-g~v~~~~~~G~htT~~~~~~~~~~~---~~~~DtpG~~~  228 (298)
T PRK00098        165 KVTVLAGQSGVGKSTLLNALAPDLELKT-GEISEALGRGKHTTTHVELYDLPGG---GLLIDTPGFSS  228 (298)
T ss_pred             ceEEEECCCCCCHHHHHHHHhCCcCCCC-cceeccCCCCCcccccEEEEEcCCC---cEEEECCCcCc
Confidence            4688999999999999999987543221 1111       12233334444432   25899999743

>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]

Probab=98.22  E-value=8.7e-05  Score=51.43  Aligned_cols=48  Identities=29%  Similarity=0.312  Sum_probs=32.6

Q ss_pred             hhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCc
Q 030364           78 MYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLE  128 (178)
Q Consensus        78 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~  128 (178)
                      ...+++|.+|+|+|.+- .|+....+..+......  =.++.+|+||.|-.
T Consensus       151 g~~~~vD~vivVvDpS~-~sl~taeri~~L~~elg--~k~i~~V~NKv~e~  198 (255)
T COG3640         151 GTIEGVDLVIVVVDPSY-KSLRTAERIKELAEELG--IKRIFVVLNKVDEE  198 (255)
T ss_pred             ccccCCCEEEEEeCCcH-HHHHHHHHHHHHHHHhC--CceEEEEEeeccch
Confidence            34678999999999985 45555544433333331  37799999999953

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=98.19  E-value=7.2e-06  Score=62.18  Aligned_cols=65  Identities=14%  Similarity=0.075  Sum_probs=37.6

Q ss_pred             EEEEEEEeCCCchhhhcc----chhh--hcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCc
Q 030364           58 TIKFDIWDTAGQERYHSL----APMY--YRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLE  128 (178)
Q Consensus        58 ~~~~~i~d~~g~~~~~~~----~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~  128 (178)
                      .+.+.|+||+|.......    ...+  ...++-+++|+|+.-...-.+   ....+...   -.+.-+|+||.|..
T Consensus       182 ~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~---~a~~F~~~---~~~~g~IlTKlD~~  252 (429)
T TIGR01425       182 NFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEA---QAKAFKDS---VDVGSVIITKLDGH  252 (429)
T ss_pred             CCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHH---HHHHHHhc---cCCcEEEEECccCC
Confidence            468889999996433221    1111  235678999999886432222   12223222   12457889999963

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>cd03114 ArgK-like The function of this protein family is unkown

Probab=98.19  E-value=1.4e-05  Score=52.31  Aligned_cols=58  Identities=22%  Similarity=0.147  Sum_probs=36.8

Q ss_pred             EEEEEEEeCCCchhhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCC
Q 030364           58 TIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVD  126 (178)
Q Consensus        58 ~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D  126 (178)
                      .+.+.++|++|...   ....++..+|-++++....-.+.+.-++.  ..+...      -++++||.|
T Consensus        91 ~~D~iiIDtaG~~~---~~~~~~~~Ad~~ivv~tpe~~D~y~~~k~--~~~~~~------~~~~~~k~~  148 (148)
T cd03114          91 GFDVIIVETVGVGQ---SEVDIASMADTTVVVMAPGAGDDIQAIKA--GIMEIA------DIVVVNKAD  148 (148)
T ss_pred             CCCEEEEECCccCh---hhhhHHHhCCEEEEEECCCchhHHHHhhh--hHhhhc------CEEEEeCCC
Confidence            46788999988642   22347888999999888774333332211  222222      388899987

The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.

>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []

Probab=98.17  E-value=0.00018  Score=47.54  Aligned_cols=140  Identities=11%  Similarity=0.004  Sum_probs=100.5

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEE
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVV   88 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~   88 (178)
                      ..-.|+++|..+.++..|...+......                      +++++.-...-.--. .....-...|.++|
T Consensus        14 n~atiLLVg~e~~~~~~LA~a~l~~~~~----------------------~~l~Vh~a~sLPLp~-e~~~lRprIDlIVF   70 (176)
T PF11111_consen   14 NTATILLVGTEEALLQQLAEAMLEEDKE----------------------FKLKVHLAKSLPLPS-ENNNLRPRIDLIVF   70 (176)
T ss_pred             ceeEEEEecccHHHHHHHHHHHHhhccc----------------------eeEEEEEeccCCCcc-cccCCCceeEEEEE
Confidence            3779999999999999999998852210                      111121111100000 01112356899999


Q ss_pred             EEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Q 030364           89 VYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIG  168 (178)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  168 (178)
                      ++|.++..|+..++.-+..+.....- ..+.++++-....+...+...+..+++..+.+|++.+.-...++...+-+.|.
T Consensus        71 vinl~sk~SL~~ve~SL~~vd~~ffl-GKVCfl~t~a~~~~~~sv~~~~V~kla~~y~~plL~~~le~~~~~~~lAqRLL  149 (176)
T PF11111_consen   71 VINLHSKYSLQSVEASLSHVDPSFFL-GKVCFLATNAGRESHCSVHPNEVRKLAATYNSPLLFADLENEEGRTSLAQRLL  149 (176)
T ss_pred             EEecCCcccHHHHHHHHhhCChhhhc-cceEEEEcCCCcccccccCHHHHHHHHHHhCCCEEEeecccchHHHHHHHHHH
Confidence            99999999999988777776554332 34677777777777778888999999999999999999999999888888888


Q ss_pred             hhcc
Q 030364          169 DCTE  172 (178)
Q Consensus       169 ~~i~  172 (178)
                      +.++
T Consensus       150 ~~lq  153 (176)
T PF11111_consen  150 RMLQ  153 (176)
T ss_pred             HHHH
Confidence            7665

CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=98.11  E-value=2.9e-05  Score=52.07  Aligned_cols=83  Identities=13%  Similarity=0.078  Sum_probs=44.1

Q ss_pred             EEEEEEEeCCCchhhhc----cchhh--hcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccc
Q 030364           58 TIKFDIWDTAGQERYHS----LAPMY--YRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR  131 (178)
Q Consensus        58 ~~~~~i~d~~g~~~~~~----~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~  131 (178)
                      .+.+.++|++|......    ....+  ....+.+++|+|+......  + .....+.+...   ..-+|.||.|.....
T Consensus        82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~--~-~~~~~~~~~~~---~~~viltk~D~~~~~  155 (173)
T cd03115          82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDA--V-NQAKAFNEALG---ITGVILTKLDGDARG  155 (173)
T ss_pred             CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHH--H-HHHHHHHhhCC---CCEEEEECCcCCCCc
Confidence            45577899999743211    11111  1348999999998754321  2 23333332211   246778999964322


Q ss_pred             ccCHHHHHHHHHHcCCeEE
Q 030364          132 KVKNEEGELYAQENGLSFL  150 (178)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~  150 (178)
                          -.....+...++|+.
T Consensus       156 ----g~~~~~~~~~~~p~~  170 (173)
T cd03115         156 ----GAALSIRAVTGKPIK  170 (173)
T ss_pred             ----chhhhhHHHHCcCeE
Confidence                122224555565543

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>COG0523 Putative GTPases (G3E family) [General function prediction only]

Probab=98.09  E-value=0.00012  Score=53.81  Aligned_cols=97  Identities=19%  Similarity=0.153  Sum_probs=54.2

Q ss_pred             EEEEEEeCCCchhhhccchhhh--------cCCcEEEEEEECCCHhH-HHHHHH-HHHHHHHhCCCCceEEEEEeCCCCc
Q 030364           59 IKFDIWDTAGQERYHSLAPMYY--------RGAAAAVVVYDITSMDS-FERAKK-WVQELQRQGNPNLIMFLVANKVDLE  128 (178)
Q Consensus        59 ~~~~i~d~~g~~~~~~~~~~~~--------~~~d~~i~v~d~~~~~s-~~~~~~-~~~~~~~~~~~~~~~ivv~nK~D~~  128 (178)
                      ....++++.|..........+.        -..|++|-|+|+.+-.. ...+.. ...++...      =++++||.|+.
T Consensus        85 ~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~A------D~ivlNK~Dlv  158 (323)
T COG0523          85 PDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAFA------DVIVLNKTDLV  158 (323)
T ss_pred             CCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHhC------cEEEEecccCC
Confidence            4456788888644433322222        23478999999986432 221222 22233222      28899999998


Q ss_pred             cccccCHHHHHHHHHHc--CCeEEEEeCCCCCCHHHHH
Q 030364          129 EKRKVKNEEGELYAQEN--GLSFLETSAKSAHNVNELF  164 (178)
Q Consensus       129 ~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~~~  164 (178)
                      ++..  .+......+..  .++++.++. .+.+..+++
T Consensus       159 ~~~~--l~~l~~~l~~lnp~A~i~~~~~-~~~~~~~ll  193 (323)
T COG0523         159 DAEE--LEALEARLRKLNPRARIIETSY-GDVDLAELL  193 (323)
T ss_pred             CHHH--HHHHHHHHHHhCCCCeEEEccc-cCCCHHHhh
Confidence            7664  23334444444  468888887 334444444

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.08  E-value=8.8e-05  Score=55.52  Aligned_cols=140  Identities=12%  Similarity=0.065  Sum_probs=69.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCcCCC---CccCceeeeEE------------------EEEEEe---------CCeEE
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVKGQFFD---FQESTIGAAFF------------------TQVLSL---------NEVTI   59 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~~~~~~---~~~~~~~~~~~------------------~~~~~~---------~~~~~   59 (178)
                      .-.++++|++|+||||++..|.......   ........+.+                  ......         .....
T Consensus       137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~  216 (374)
T PRK14722        137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNK  216 (374)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCC
Confidence            4578899999999999999987532100   00000001100                  000100         11235


Q ss_pred             EEEEEeCCCchhhhccc---hhhh---cCCcEEEEEEECCC-HhHHHHHHHHHHHHHHhCCCC--ceEEEEEeCCCCccc
Q 030364           60 KFDIWDTAGQERYHSLA---PMYY---RGAAAAVVVYDITS-MDSFERAKKWVQELQRQGNPN--LIMFLVANKVDLEEK  130 (178)
Q Consensus        60 ~~~i~d~~g~~~~~~~~---~~~~---~~~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~--~~~ivv~nK~D~~~~  130 (178)
                      .+.++|++|........   ...+   ....-.++|++++. .+....+..-+..........  .+--+|+||.|... 
T Consensus       217 DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt~-  295 (374)
T PRK14722        217 HMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEAS-  295 (374)
T ss_pred             CEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccCC-
Confidence            67899999965332211   1112   22345688899886 344444333233322111100  12357789999533 


Q ss_pred             cccCHHHHHHHHHHcCCeEEEEe
Q 030364          131 RKVKNEEGELYAQENGLSFLETS  153 (178)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~S  153 (178)
                         ..=....+....+.|+..++
T Consensus       296 ---~~G~~l~~~~~~~lPi~yvt  315 (374)
T PRK14722        296 ---NLGGVLDTVIRYKLPVHYVS  315 (374)
T ss_pred             ---CccHHHHHHHHHCcCeEEEe
Confidence               11233444455566655544

>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]

Probab=98.08  E-value=1.4e-05  Score=61.05  Aligned_cols=119  Identities=22%  Similarity=0.275  Sum_probs=78.2

Q ss_pred             CCCCceeEEEEEcCCCCCHHHHHHHHHhCc------------CCCC--ccCceeeeEEEEEEEe----------------
Q 030364            5 SNKNIQVKLVLLGDMGTGKTSLVLRFVKGQ------------FFDF--QESTIGAAFFTQVLSL----------------   54 (178)
Q Consensus         5 ~~~~~~~~i~v~G~~~~GKStl~~~l~~~~------------~~~~--~~~~~~~~~~~~~~~~----------------   54 (178)
                      ..+....++.|+.+..-|||||-..|....            |...  .+...+.+.....+..                
T Consensus        14 ~k~~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~   93 (842)
T KOG0469|consen   14 DKKKNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEG   93 (842)
T ss_pred             ccccccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCC
Confidence            344456789999999999999999887532            1110  0111111221111111                


Q ss_pred             CCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCC
Q 030364           55 NEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDL  127 (178)
Q Consensus        55 ~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~  127 (178)
                      ++..+.+.++|.||+-+|.+.....++-.|+.++|+|.-+.-....-.-+.+.+..+    ...++++||+|.
T Consensus        94 d~~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~ER----IkPvlv~NK~DR  162 (842)
T KOG0469|consen   94 DGNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAER----IKPVLVMNKMDR  162 (842)
T ss_pred             CCcceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHhh----ccceEEeehhhH
Confidence            445678899999999999999999999999999999988764433322233344333    334788999996

>KOG2484 consensus GTPase [General function prediction only]

Probab=98.06  E-value=5e-06  Score=61.39  Aligned_cols=58  Identities=17%  Similarity=0.311  Sum_probs=44.6

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCc
Q 030364            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ   69 (178)
Q Consensus         8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~   69 (178)
                      .+.+++.|+|.|++||||++|+|...+... ..++.|.+.....+..+.   .+.|.|.||.
T Consensus       250 k~sIrvGViG~PNVGKSSvINsL~~~k~C~-vg~~pGvT~smqeV~Ldk---~i~llDsPgi  307 (435)
T KOG2484|consen  250 KTSIRVGIIGYPNVGKSSVINSLKRRKACN-VGNVPGVTRSMQEVKLDK---KIRLLDSPGI  307 (435)
T ss_pred             CcceEeeeecCCCCChhHHHHHHHHhcccc-CCCCccchhhhhheeccC---CceeccCCce
Confidence            568999999999999999999999877644 445556555555555544   4669999995

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=98.04  E-value=1.1e-06  Score=60.20  Aligned_cols=84  Identities=18%  Similarity=0.071  Sum_probs=46.7

Q ss_pred             EEEEEEeCCCchhhhcc----chhh--hcCCcEEEEEEECCCHh-HHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccc
Q 030364           59 IKFDIWDTAGQERYHSL----APMY--YRGAAAAVVVYDITSMD-SFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR  131 (178)
Q Consensus        59 ~~~~i~d~~g~~~~~~~----~~~~--~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~  131 (178)
                      +.+.++||+|.......    ...+  ....+-+++|.+++... ..+.+..+    ......   --+++||.|...  
T Consensus        84 ~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~----~~~~~~---~~lIlTKlDet~--  154 (196)
T PF00448_consen   84 YDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAF----YEAFGI---DGLILTKLDETA--  154 (196)
T ss_dssp             SSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHH----HHHSST---CEEEEESTTSSS--
T ss_pred             CCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHH----hhcccC---ceEEEEeecCCC--
Confidence            56789999996433221    1111  12577899999998643 33333222    222111   256799999633  


Q ss_pred             ccCHHHHHHHHHHcCCeEEEEe
Q 030364          132 KVKNEEGELYAQENGLSFLETS  153 (178)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~S  153 (178)
                        ..-....+....+.|+-.++
T Consensus       155 --~~G~~l~~~~~~~~Pi~~it  174 (196)
T PF00448_consen  155 --RLGALLSLAYESGLPISYIT  174 (196)
T ss_dssp             --TTHHHHHHHHHHTSEEEEEE
T ss_pred             --CcccceeHHHHhCCCeEEEE
Confidence              12345555666788776665

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1)

Probab=98.03  E-value=3.3e-05  Score=41.29  Aligned_cols=44  Identities=27%  Similarity=0.285  Sum_probs=29.6

Q ss_pred             CCcEEEEEEECCC--HhHHHHHHHHHHHHHHhCCCCceEEEEEeCCC
Q 030364           82 GAAAAVVVYDITS--MDSFERAKKWVQELQRQGNPNLIMFLVANKVD  126 (178)
Q Consensus        82 ~~d~~i~v~d~~~--~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D  126 (178)
                      -.++++|++|++.  +-+.+.-..+++.++.. .++.|+++|+||+|
T Consensus        13 L~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~-F~~~P~i~V~nK~D   58 (58)
T PF06858_consen   13 LADAILFIIDPSEQCGYSIEEQLSLFKEIKPL-FPNKPVIVVLNKID   58 (58)
T ss_dssp             T-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHH-TTTS-EEEEE--TT
T ss_pred             hcceEEEEEcCCCCCCCCHHHHHHHHHHHHHH-cCCCCEEEEEeccC
Confidence            4678999999995  45677767777888776 35899999999998

The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.

>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt

Probab=97.99  E-value=1.6e-05  Score=53.64  Aligned_cols=68  Identities=24%  Similarity=0.215  Sum_probs=37.1

Q ss_pred             EEEEEEeCCCchhhhcc---chh--hhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccc
Q 030364           59 IKFDIWDTAGQERYHSL---APM--YYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR  131 (178)
Q Consensus        59 ~~~~i~d~~g~~~~~~~---~~~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~  131 (178)
                      ....++++.|......+   ...  ..-..+.+|.|+|+.+-.........+..-...  .   =++++||+|+.+..
T Consensus        85 ~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~--A---DvIvlnK~D~~~~~  157 (178)
T PF02492_consen   85 PDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAF--A---DVIVLNKIDLVSDE  157 (178)
T ss_dssp             -SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT------SEEEEE-GGGHHHH
T ss_pred             cCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcchh--c---CEEEEeccccCChh
Confidence            45667888885443333   011  123457899999997753333333333222222  1   28899999987654

Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.

>KOG1534 consensus Putative transcription factor FET5 [Transcription]

Probab=97.97  E-value=3.5e-05  Score=52.47  Aligned_cols=23  Identities=17%  Similarity=0.440  Sum_probs=20.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      ++-++|+|+.||||||+++.+..
T Consensus         3 ~ya~lV~GpAgSGKSTyC~~~~~   25 (273)
T KOG1534|consen    3 RYAQLVMGPAGSGKSTYCSSMYE   25 (273)
T ss_pred             ceeEEEEccCCCCcchHHHHHHH
Confidence            45678999999999999998875

>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.96  E-value=2e-05  Score=66.24  Aligned_cols=113  Identities=21%  Similarity=0.205  Sum_probs=63.0

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCcCC-CCccC---ceeeeEEEEEEEeCCeEEEEEEEeCCCch--------hhhccchhh-
Q 030364           13 LVLLGDMGTGKTSLVLRFVKGQFF-DFQES---TIGAAFFTQVLSLNEVTIKFDIWDTAGQE--------RYHSLAPMY-   79 (178)
Q Consensus        13 i~v~G~~~~GKStl~~~l~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~i~d~~g~~--------~~~~~~~~~-   79 (178)
                      -+|+|++|+||||++..-. ..|+ .....   ..+.....+...+.+.   -.++||.|.-        .-...|..+ 
T Consensus       128 y~viG~pgsGKTtal~~sg-l~Fpl~~~~~~~~~~~~gT~~cdwwf~de---aVlIDtaGry~~q~s~~~~~~~~W~~fL  203 (1188)
T COG3523         128 YMVIGPPGSGKTTALLNSG-LQFPLAEQMGALGLAGPGTRNCDWWFTDE---AVLIDTAGRYITQDSADEVDRAEWLGFL  203 (1188)
T ss_pred             eEEecCCCCCcchHHhccc-ccCcchhhhccccccCCCCcccCcccccc---eEEEcCCcceecccCcchhhHHHHHHHH
Confidence            4799999999999986532 2221 11111   1111111222222332   3488998841        112233322 


Q ss_pred             --------hcCCcEEEEEEECCCH-----hH----HHHHHHHHHHHHHhCCCCceEEEEEeCCCCcc
Q 030364           80 --------YRGAAAAVVVYDITSM-----DS----FERAKKWVQELQRQGNPNLIMFLVANKVDLEE  129 (178)
Q Consensus        80 --------~~~~d~~i~v~d~~~~-----~s----~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~  129 (178)
                              .+..|++|+.+|+++-     ..    ...++.-++++...-.-..|+.|++||.|+..
T Consensus       204 ~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~  270 (1188)
T COG3523         204 GLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLP  270 (1188)
T ss_pred             HHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEecccccc
Confidence                    3567999999998742     11    11133334555555457899999999999854

>PRK11537 putative GTP-binding protein YjiA; Provisional

Probab=97.95  E-value=0.00017  Score=53.05  Aligned_cols=85  Identities=7%  Similarity=0.025  Sum_probs=45.8

Q ss_pred             EEEEEEeCCCchhhhccchhhhc--------CCcEEEEEEECCCHhHH-HHHHHHHHHHHHhCCCCceEEEEEeCCCCcc
Q 030364           59 IKFDIWDTAGQERYHSLAPMYYR--------GAAAAVVVYDITSMDSF-ERAKKWVQELQRQGNPNLIMFLVANKVDLEE  129 (178)
Q Consensus        59 ~~~~i~d~~g~~~~~~~~~~~~~--------~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~  129 (178)
                      ....++++.|......+...++.        ..+++|.|+|+.+.... +.......++..   .   =+|++||+|+..
T Consensus        91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~---A---D~IvlnK~Dl~~  164 (318)
T PRK11537         91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGY---A---DRILLTKTDVAG  164 (318)
T ss_pred             CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHHh---C---CEEEEeccccCC
Confidence            45568888887544443333321        24789999999863321 111111122222   2   288999999875


Q ss_pred             ccccCHHHHHHHHHHc--CCeEEEEe
Q 030364          130 KRKVKNEEGELYAQEN--GLSFLETS  153 (178)
Q Consensus       130 ~~~~~~~~~~~~~~~~--~~~~~~~S  153 (178)
                      ..    +......+..  .++++.++
T Consensus       165 ~~----~~~~~~l~~lnp~a~i~~~~  186 (318)
T PRK11537        165 EA----EKLRERLARINARAPVYTVV  186 (318)
T ss_pred             HH----HHHHHHHHHhCCCCEEEEec
Confidence            32    2333333333  35677654

>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation

Probab=97.93  E-value=9.8e-05  Score=45.11  Aligned_cols=82  Identities=13%  Similarity=0.166  Sum_probs=49.8

Q ss_pred             EEEEc-CCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEEEE
Q 030364           13 LVLLG-DMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYD   91 (178)
Q Consensus        13 i~v~G-~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d   91 (178)
                      |.+.| ..|+||||+...+...-. ....+       ...+..+. .+.+.++|+|+....  .....+..+|.++++.+
T Consensus         2 i~~~~~kgG~Gkst~~~~la~~~~-~~~~~-------vl~~d~d~-~~d~viiD~p~~~~~--~~~~~l~~ad~viv~~~   70 (104)
T cd02042           2 IAVANQKGGVGKTTTAVNLAAALA-RRGKR-------VLLIDLDP-QYDYIIIDTPPSLGL--LTRNALAAADLVLIPVQ   70 (104)
T ss_pred             EEEEeCCCCcCHHHHHHHHHHHHH-hCCCc-------EEEEeCCC-CCCEEEEeCcCCCCH--HHHHHHHHCCEEEEecc
Confidence            56666 568999999877653221 10111       11112222 167889999986422  23367788999999998


Q ss_pred             CCCHhHHHHHHHHHH
Q 030364           92 ITSMDSFERAKKWVQ  106 (178)
Q Consensus        92 ~~~~~s~~~~~~~~~  106 (178)
                      .+. .++..+..+++
T Consensus        71 ~~~-~s~~~~~~~~~   84 (104)
T cd02042          71 PSP-LDLDGLEKLLE   84 (104)
T ss_pred             CCH-HHHHHHHHHHH
Confidence            764 55666665555

ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=97.92  E-value=1.1e-05  Score=54.41  Aligned_cols=23  Identities=30%  Similarity=0.697  Sum_probs=21.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      +||+|+|+|||||||+.+.|...
T Consensus         1 ~riiilG~pGaGK~T~A~~La~~   23 (178)
T COG0563           1 MRILILGPPGAGKSTLAKKLAKK   23 (178)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            58999999999999999999876

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=97.92  E-value=2.3e-05  Score=59.85  Aligned_cols=85  Identities=18%  Similarity=0.057  Sum_probs=45.8

Q ss_pred             EEEEEEeCCCchhhhcc----c--hhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccc
Q 030364           59 IKFDIWDTAGQERYHSL----A--PMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRK  132 (178)
Q Consensus        59 ~~~~i~d~~g~~~~~~~----~--~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~  132 (178)
                      ..+.++||+|.......    .  ......+|.+++|+|++...   ........+....   ...-+|.||.|... +-
T Consensus       176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~av~~a~~F~~~l---~i~gvIlTKlD~~a-~~  248 (437)
T PRK00771        176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QAKNQAKAFHEAV---GIGGIIITKLDGTA-KG  248 (437)
T ss_pred             CCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HHHHHHHHHHhcC---CCCEEEEecccCCC-cc
Confidence            36789999997443221    1  11234678999999988643   1112223332211   12367889999532 11


Q ss_pred             cCHHHHHHHHHHcCCeEEEEe
Q 030364          133 VKNEEGELYAQENGLSFLETS  153 (178)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~S  153 (178)
                         =.+.......+.|+..++
T Consensus       249 ---G~~ls~~~~~~~Pi~fig  266 (437)
T PRK00771        249 ---GGALSAVAETGAPIKFIG  266 (437)
T ss_pred             ---cHHHHHHHHHCcCEEEEe
Confidence               123334445666665544

>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]

Probab=97.90  E-value=3.2e-05  Score=54.86  Aligned_cols=61  Identities=23%  Similarity=0.301  Sum_probs=43.7

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCcCCCC----ccCceeeeEEEEEEEeCCeEEEEEEEeCCCc
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDF----QESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ   69 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~   69 (178)
                      -.++|+.+|..|.|||||+++|++-.+...    ..|............-.+..+++.+.|+.|.
T Consensus        41 F~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGf  105 (406)
T KOG3859|consen   41 FCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGF  105 (406)
T ss_pred             ceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeeccc
Confidence            468999999999999999999998766432    2333333333333344566788899999983

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.89  E-value=0.00056  Score=53.38  Aligned_cols=134  Identities=13%  Similarity=0.120  Sum_probs=67.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCcCCC---CccCceeeeE-E---------------EEEEEe-----------CCeEE
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVKGQFFD---FQESTIGAAF-F---------------TQVLSL-----------NEVTI   59 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~~~~~~---~~~~~~~~~~-~---------------~~~~~~-----------~~~~~   59 (178)
                      .-.|+++|++|+||||++..|...-...   ........+. .               ......           ....+
T Consensus       350 G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~~~  429 (559)
T PRK12727        350 GGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRDY  429 (559)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhccC
Confidence            4578899999999999998886521100   0000000000 0               000000           11346


Q ss_pred             EEEEEeCCCchhhhccchh---hh--cCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccC
Q 030364           60 KFDIWDTAGQERYHSLAPM---YY--RGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVK  134 (178)
Q Consensus        60 ~~~i~d~~g~~~~~~~~~~---~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~  134 (178)
                      .+.|+|++|..........   .+  ......++|++.+..  ...+...++.+...    .+.-+|+||.|...  .  
T Consensus       430 DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAtss--~~Dl~eii~~f~~~----~~~gvILTKlDEt~--~--  499 (559)
T PRK12727        430 KLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANAH--FSDLDEVVRRFAHA----KPQGVVLTKLDETG--R--  499 (559)
T ss_pred             CEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCCC--hhHHHHHHHHHHhh----CCeEEEEecCcCcc--c--
Confidence            7889999996432211000   01  112345667776642  22333333333322    34678999999632  1  


Q ss_pred             HHHHHHHHHHcCCeEEEEe
Q 030364          135 NEEGELYAQENGLSFLETS  153 (178)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~S  153 (178)
                      .-.........+.++..++
T Consensus       500 lG~aLsv~~~~~LPI~yvt  518 (559)
T PRK12727        500 FGSALSVVVDHQMPITWVT  518 (559)
T ss_pred             hhHHHHHHHHhCCCEEEEe
Confidence            2234444556677765554

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=97.89  E-value=9.1e-06  Score=54.26  Aligned_cols=49  Identities=20%  Similarity=0.242  Sum_probs=33.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEE
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIK   60 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   60 (178)
                      ..=+++.|++|+||||+++.|....  ....+.+.++..+..-..+|..|.
T Consensus         4 G~l~vlsgPSG~GKsTl~k~L~~~~--~l~~SVS~TTR~pR~gEv~G~dY~   52 (191)
T COG0194           4 GLLIVLSGPSGVGKSTLVKALLEDD--KLRFSVSATTRKPRPGEVDGVDYF   52 (191)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhhc--CeEEEEEeccCCCCCCCcCCceeE
Confidence            4557888999999999999998766  333444444555555566665555

>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily

Probab=97.89  E-value=9.2e-05  Score=47.88  Aligned_cols=106  Identities=18%  Similarity=0.169  Sum_probs=61.8

Q ss_pred             EEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEEEECCC
Q 030364           15 LLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITS   94 (178)
Q Consensus        15 v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~   94 (178)
                      .-|..|+|||++.-.+...-. .....+.-.+...   ......+.+.++|+|+..  .......+..+|.++++.+.+.
T Consensus         5 ~~~kgg~gkt~~~~~~a~~~~-~~~~~~~~vd~D~---~~~~~~yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~~   78 (139)
T cd02038           5 TSGKGGVGKTNISANLALALA-KLGKRVLLLDADL---GLANLDYDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPEP   78 (139)
T ss_pred             EcCCCCCcHHHHHHHHHHHHH-HCCCcEEEEECCC---CCCCCCCCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCCh
Confidence            447889999999776653211 0011111111000   001112678899999753  3333567889999999999874


Q ss_pred             HhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCc
Q 030364           95 MDSFERAKKWVQELQRQGNPNLIMFLVANKVDLE  128 (178)
Q Consensus        95 ~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~  128 (178)
                       .++......++.+.... ...++.+|+|+.+..
T Consensus        79 -~s~~~~~~~l~~l~~~~-~~~~~~lVvN~~~~~  110 (139)
T cd02038          79 -TSITDAYALIKKLAKQL-RVLNFRVVVNRAESP  110 (139)
T ss_pred             -hHHHHHHHHHHHHHHhc-CCCCEEEEEeCCCCH
Confidence             44555555555554432 345678999999743

It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=97.88  E-value=0.00022  Score=45.83  Aligned_cols=25  Identities=36%  Similarity=0.480  Sum_probs=21.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCc
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVKGQ   34 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~~~   34 (178)
                      ...+++.|++|+|||++++.+...-
T Consensus        19 ~~~v~i~G~~G~GKT~l~~~i~~~~   43 (151)
T cd00009          19 PKNLLLYGPPGTGKTTLARAIANEL   43 (151)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHh
Confidence            4579999999999999999988644

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>PRK10867 signal recognition particle protein; Provisional

Probab=97.87  E-value=2.7e-05  Score=59.36  Aligned_cols=86  Identities=14%  Similarity=0.033  Sum_probs=46.3

Q ss_pred             EEEEEEEeCCCchhhhc----cchhh--hcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccc
Q 030364           58 TIKFDIWDTAGQERYHS----LAPMY--YRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR  131 (178)
Q Consensus        58 ~~~~~i~d~~g~~~~~~----~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~  131 (178)
                      .+.+.++||+|......    ....+  .-..+.+++|+|+...+   ........+....   ...-+|.||.|... +
T Consensus       183 ~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq---~av~~a~~F~~~~---~i~giIlTKlD~~~-r  255 (433)
T PRK10867        183 GYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQ---DAVNTAKAFNEAL---GLTGVILTKLDGDA-R  255 (433)
T ss_pred             CCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHH---HHHHHHHHHHhhC---CCCEEEEeCccCcc-c
Confidence            36788999999632211    11111  12567889999987643   2222333333221   11366789999532 1


Q ss_pred             ccCHHHHHHHHHHcCCeEEEEe
Q 030364          132 KVKNEEGELYAQENGLSFLETS  153 (178)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~S  153 (178)
                      .   -.+.......++|+..++
T Consensus       256 g---G~alsi~~~~~~PI~fig  274 (433)
T PRK10867        256 G---GAALSIRAVTGKPIKFIG  274 (433)
T ss_pred             c---cHHHHHHHHHCcCEEEEe
Confidence            1   124445556677765554

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

Probab=97.86  E-value=0.00027  Score=42.22  Aligned_cols=69  Identities=22%  Similarity=0.279  Sum_probs=43.8

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhcc-chhhhcCCcEEEEEEE
Q 030364           13 LVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSL-APMYYRGAAAAVVVYD   91 (178)
Q Consensus        13 i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~-~~~~~~~~d~~i~v~d   91 (178)
                      +++.|..|+||||+...+...-..      .+.    ....++    .+.++|+++....... .......+|.++++++
T Consensus         2 ~~~~g~~G~Gktt~~~~l~~~l~~------~g~----~v~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~   67 (99)
T cd01983           2 IVVTGKGGVGKTTLAANLAAALAK------RGK----RVLLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTT   67 (99)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHH------CCC----eEEEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecC
Confidence            678899999999999887653211      010    111111    5679999976432221 1456678899999998


Q ss_pred             CCCH
Q 030364           92 ITSM   95 (178)
Q Consensus        92 ~~~~   95 (178)
                      ....
T Consensus        68 ~~~~   71 (99)
T cd01983          68 PEAL   71 (99)
T ss_pred             Cchh
Confidence            7753

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=97.86  E-value=1.6e-05  Score=49.97  Aligned_cols=22  Identities=23%  Similarity=0.516  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 030364           12 KLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      .|+|.|++||||||+.+.|...
T Consensus         1 vI~I~G~~gsGKST~a~~La~~   22 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAER   22 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999999763

...

>PRK08118 topology modulation protein; Reviewed

Probab=97.86  E-value=1.6e-05  Score=53.02  Aligned_cols=23  Identities=30%  Similarity=0.593  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      .+|+|+|++|||||||.+.|...
T Consensus         2 ~rI~I~G~~GsGKSTlak~L~~~   24 (167)
T PRK08118          2 KKIILIGSGGSGKSTLARQLGEK   24 (167)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            38999999999999999998764

>TIGR00959 ffh signal recognition particle protein

Probab=97.85  E-value=2.3e-05  Score=59.67  Aligned_cols=87  Identities=15%  Similarity=0.070  Sum_probs=48.3

Q ss_pred             EEEEEEEeCCCchhhhcc----chh--hhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccc
Q 030364           58 TIKFDIWDTAGQERYHSL----APM--YYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR  131 (178)
Q Consensus        58 ~~~~~i~d~~g~~~~~~~----~~~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~  131 (178)
                      .+.+.++||+|.......    ...  ..-..+.+++|+|+...+   ....+...+.....   ..-+|.||.|... +
T Consensus       182 ~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq---~~~~~a~~f~~~v~---i~giIlTKlD~~~-~  254 (428)
T TIGR00959       182 GFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQ---DAVNTAKTFNERLG---LTGVVLTKLDGDA-R  254 (428)
T ss_pred             CCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchH---HHHHHHHHHHhhCC---CCEEEEeCccCcc-c
Confidence            366889999996332211    111  123578899999988643   23333344433211   2367799999532 1


Q ss_pred             ccCHHHHHHHHHHcCCeEEEEeC
Q 030364          132 KVKNEEGELYAQENGLSFLETSA  154 (178)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~Sa  154 (178)
                      .   -.+.......++|+..+..
T Consensus       255 ~---G~~lsi~~~~~~PI~fi~~  274 (428)
T TIGR00959       255 G---GAALSVRSVTGKPIKFIGV  274 (428)
T ss_pred             c---cHHHHHHHHHCcCEEEEeC
Confidence            1   1245555667777665543

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>PRK07261 topology modulation protein; Provisional

Probab=97.85  E-value=1.6e-05  Score=53.28  Aligned_cols=23  Identities=26%  Similarity=0.613  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      ++|+|+|++|+|||||.+.|...
T Consensus         1 ~ri~i~G~~GsGKSTla~~l~~~   23 (171)
T PRK07261          1 MKIAIIGYSGSGKSTLARKLSQH   23 (171)
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHH
Confidence            47999999999999999998643

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=97.82  E-value=0.00045  Score=46.53  Aligned_cols=25  Identities=28%  Similarity=0.298  Sum_probs=21.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCc
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVKGQ   34 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~~~   34 (178)
                      .-.++++|++|+|||||++.+.+-.
T Consensus        25 Ge~~~l~G~nGsGKSTLl~~l~Gl~   49 (177)
T cd03222          25 GEVIGIVGPNGTGKTTAVKILAGQL   49 (177)
T ss_pred             CCEEEEECCCCChHHHHHHHHHcCC
Confidence            4478999999999999999988643

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]

Probab=97.81  E-value=6e-05  Score=54.22  Aligned_cols=61  Identities=16%  Similarity=0.183  Sum_probs=38.8

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHHhCcCC----CCccCceeeeEEEEE-EEeCCeEEEEEEEeCCCc
Q 030364            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFF----DFQESTIGAAFFTQV-LSLNEVTIKFDIWDTAGQ   69 (178)
Q Consensus         8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~----~~~~~~~~~~~~~~~-~~~~~~~~~~~i~d~~g~   69 (178)
                      +.+.++.|+|-||+|||||+|++......    .......+.+..... +.+.+.. .+.+.|+||.
T Consensus       141 ~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp-~vy~iDTPGi  206 (335)
T KOG2485|consen  141 NSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRP-PVYLIDTPGI  206 (335)
T ss_pred             CCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCC-ceEEecCCCc
Confidence            46889999999999999999987653321    112222333333333 3443332 3679999995

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=97.80  E-value=2.8e-05  Score=42.62  Aligned_cols=21  Identities=24%  Similarity=0.409  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 030364           12 KLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~   32 (178)
                      ..++.|+.|+||||++.++.-
T Consensus        25 ~tli~G~nGsGKSTllDAi~~   45 (62)
T PF13555_consen   25 VTLITGPNGSGKSTLLDAIQT   45 (62)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            488999999999999998764

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=97.76  E-value=0.00012  Score=48.91  Aligned_cols=134  Identities=18%  Similarity=0.236  Sum_probs=63.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeC-CCc---------------------
Q 030364           12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDT-AGQ---------------------   69 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~-~g~---------------------   69 (178)
                      ||++.|.+|+||||+++++...--.. ..+..  .+......-++..+-|.+.|. .|.                     
T Consensus         1 ~i~iTG~pG~GKTTll~k~i~~l~~~-~~~v~--Gf~t~evr~~g~r~GF~iv~l~~g~~~~la~~~~~~~~~vgky~v~   77 (168)
T PF03266_consen    1 HIFITGPPGVGKTTLLKKVIEELKKK-GLPVG--GFYTEEVRENGRRIGFDIVDLNSGEEAILARVDFRSGPRVGKYFVD   77 (168)
T ss_dssp             EEEEES-TTSSHHHHHHHHHHHHHHT-CGGEE--EEEEEEEETTSSEEEEEEEET-TS-EEEEEETTSS-SCECTTCEE-
T ss_pred             CEEEECcCCCCHHHHHHHHHHHhhcc-CCccc--eEEeecccCCCceEEEEEEECcCCCccccccccccccccCCCEEEc
Confidence            68999999999999999987532100 11222  222333334555555666666 331                     


Q ss_pred             -hhhhcc----chhhhcCCcEEEEEEECCCH-hHHHHHHHHHHHHHHhCCCCceEEEEEeCC-CCccccccCHHHHHHHH
Q 030364           70 -ERYHSL----APMYYRGAAAAVVVYDITSM-DSFERAKKWVQELQRQGNPNLIMFLVANKV-DLEEKRKVKNEEGELYA  142 (178)
Q Consensus        70 -~~~~~~----~~~~~~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~-D~~~~~~~~~~~~~~~~  142 (178)
                       +.+...    ....+..+|  ++++|---+ +..  ...|.+.+...-..+.|++.++.+. +.        .-...+.
T Consensus        78 ~e~fe~~~~~~L~~~~~~~~--liviDEIG~mEl~--~~~F~~~v~~~l~s~~~vi~vv~~~~~~--------~~l~~i~  145 (168)
T PF03266_consen   78 LESFEEIGLPALRNALSSSD--LIVIDEIGKMELK--SPGFREAVEKLLDSNKPVIGVVHKRSDN--------PFLEEIK  145 (168)
T ss_dssp             HHHHHCCCCCCCHHHHHCCH--EEEE---STTCCC---CHHHHHHHHHHCTTSEEEEE--SS--S--------CCHHHHH
T ss_pred             HHHHHHHHHHHHHhhcCCCC--EEEEeccchhhhc--CHHHHHHHHHHHcCCCcEEEEEecCCCc--------HHHHHHH
Confidence             111111    111124555  555663321 110  1233344444334678888777766 32        1234455


Q ss_pred             HHcCCeEEEEeCCCCCCH
Q 030364          143 QENGLSFLETSAKSAHNV  160 (178)
Q Consensus       143 ~~~~~~~~~~Sa~~~~~i  160 (178)
                      ...++.+++++..+.+.+
T Consensus       146 ~~~~~~i~~vt~~NRd~l  163 (168)
T PF03266_consen  146 RRPDVKIFEVTEENRDAL  163 (168)
T ss_dssp             TTTTSEEEE--TTTCCCH
T ss_pred             hCCCcEEEEeChhHHhhH
Confidence            556788888876665444

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=97.75  E-value=2.6e-05  Score=50.48  Aligned_cols=20  Identities=40%  Similarity=0.747  Sum_probs=18.4

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q 030364           13 LVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        13 i~v~G~~~~GKStl~~~l~~   32 (178)
                      |+++|+|||||||+++.+..
T Consensus         2 ii~~G~pgsGKSt~a~~l~~   21 (143)
T PF13671_consen    2 IILCGPPGSGKSTLAKRLAK   21 (143)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999999874

...

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=97.74  E-value=0.00036  Score=53.32  Aligned_cols=50  Identities=18%  Similarity=0.256  Sum_probs=30.5

Q ss_pred             chhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCC
Q 030364           76 APMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVD  126 (178)
Q Consensus        76 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D  126 (178)
                      ....+++++.+|+== .+.--+..+++.++..+......++.++++-+|.+
T Consensus       152 lKaLyr~a~iLILDE-PTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~  201 (501)
T COG3845         152 LKALYRGARLLILDE-PTAVLTPQEADELFEILRRLAAEGKTIIFITHKLK  201 (501)
T ss_pred             HHHHhcCCCEEEEcC-CcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH
Confidence            455677887776621 11112345566666666665556777888888866

>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster

Probab=97.72  E-value=0.00027  Score=43.45  Aligned_cols=99  Identities=16%  Similarity=0.102  Sum_probs=57.8

Q ss_pred             cCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEEEECCCHh
Q 030364           17 GDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMD   96 (178)
Q Consensus        17 G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~   96 (178)
                      +..|+||||+...|...-.......+.     ........ ...+.++|+|+...  ......+..+|.++++.+.+. .
T Consensus         7 ~kgg~gkt~~~~~la~~~~~~~~~~~~-----l~d~d~~~-~~D~IIiDtpp~~~--~~~~~~l~~aD~vlvvv~~~~-~   77 (106)
T cd03111           7 AKGGVGATTLAANLAVALAKEAGRRVL-----LVDLDLQF-GDDYVVVDLGRSLD--EVSLAALDQADRVFLVTQQDL-P   77 (106)
T ss_pred             CCCCCcHHHHHHHHHHHHHhcCCCcEE-----EEECCCCC-CCCEEEEeCCCCcC--HHHHHHHHHcCeEEEEecCCh-H
Confidence            567899999887665322111011111     11111111 11677999998642  233456788999999988764 5


Q ss_pred             HHHHHHHHHHHHHHhCCC-CceEEEEEeC
Q 030364           97 SFERAKKWVQELQRQGNP-NLIMFLVANK  124 (178)
Q Consensus        97 s~~~~~~~~~~~~~~~~~-~~~~ivv~nK  124 (178)
                      +...+..+++.+.....+ ..++.+|+|+
T Consensus        78 s~~~~~~~~~~l~~~~~~~~~~~~lVvNr  106 (106)
T cd03111          78 SIRNAKRLLELLRVLDYSLPAKIELVLNR  106 (106)
T ss_pred             HHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence            566677777777665444 4556677775

The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.

>PRK14737 gmk guanylate kinase; Provisional

Probab=97.71  E-value=3.2e-05  Score=52.55  Aligned_cols=23  Identities=13%  Similarity=0.364  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      .=|+++|++|||||||+++|...
T Consensus         5 ~~ivl~GpsG~GK~tl~~~l~~~   27 (186)
T PRK14737          5 KLFIISSVAGGGKSTIIQALLEE   27 (186)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhc
Confidence            34889999999999999999864

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=97.71  E-value=0.00028  Score=45.06  Aligned_cols=25  Identities=40%  Similarity=0.707  Sum_probs=21.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCc
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVKGQ   34 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~~~   34 (178)
                      ..-|++.|+.|+|||||++.+...-
T Consensus        22 ~~~i~l~G~lGaGKTtl~~~l~~~l   46 (133)
T TIGR00150        22 GTVVLLKGDLGAGKTTLVQGLLQGL   46 (133)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHc
Confidence            4468899999999999999998754

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>PRK14738 gmk guanylate kinase; Provisional

Probab=97.69  E-value=5.1e-05  Score=52.43  Aligned_cols=27  Identities=22%  Similarity=0.388  Sum_probs=22.4

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHHhC
Q 030364            7 KNIQVKLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus         7 ~~~~~~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      +....-|+|+|++|||||||++.|...
T Consensus        10 ~~~~~~ivi~GpsG~GK~tl~~~L~~~   36 (206)
T PRK14738         10 PAKPLLVVISGPSGVGKDAVLARMRER   36 (206)
T ss_pred             CCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence            345667888999999999999999754

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=97.68  E-value=5.4e-05  Score=42.71  Aligned_cols=21  Identities=19%  Similarity=0.563  Sum_probs=18.8

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q 030364           13 LVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus        13 i~v~G~~~~GKStl~~~l~~~   33 (178)
                      |++.|++|+||||+.+.+...
T Consensus         2 i~i~G~~gsGKst~~~~l~~~   22 (69)
T cd02019           2 IAITGGSGSGKSTVAKKLAEQ   22 (69)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            688999999999999998754

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>TIGR02475 CobW cobalamin biosynthesis protein CobW

Probab=97.68  E-value=0.001  Score=49.55  Aligned_cols=21  Identities=29%  Similarity=0.626  Sum_probs=18.4

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q 030364           13 LVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus        13 i~v~G~~~~GKStl~~~l~~~   33 (178)
                      .+|.|--|+|||||+++++..
T Consensus         7 ~iltGFLGaGKTTll~~ll~~   27 (341)
T TIGR02475         7 TIVTGFLGAGKTTLIRHLLQN   27 (341)
T ss_pred             EEEEECCCCCHHHHHHHHHhc
Confidence            567799999999999999864

A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).

>KOG2423 consensus Nucleolar GTPase [General function prediction only]

Probab=97.67  E-value=1.7e-05  Score=58.80  Aligned_cols=85  Identities=16%  Similarity=0.201  Sum_probs=52.9

Q ss_pred             CCCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhh--hccchhhhcCC
Q 030364            6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERY--HSLAPMYYRGA   83 (178)
Q Consensus         6 ~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~--~~~~~~~~~~~   83 (178)
                      ...+.+.|.++|-||+||||++|+|-..+... ..|..+.+-....+.+   .-.+.++|+||.--.  .......++  
T Consensus       303 ~dkkqISVGfiGYPNvGKSSiINTLR~KkVCk-vAPIpGETKVWQYItL---mkrIfLIDcPGvVyps~dset~ivLk--  376 (572)
T KOG2423|consen  303 SDKKQISVGFIGYPNVGKSSIINTLRKKKVCK-VAPIPGETKVWQYITL---MKRIFLIDCPGVVYPSSDSETDIVLK--  376 (572)
T ss_pred             cCccceeeeeecCCCCchHHHHHHHhhccccc-ccCCCCcchHHHHHHH---HhceeEecCCCccCCCCCchHHHHhh--
Confidence            35668999999999999999999998877654 4444444322211111   124568999995221  122232332  


Q ss_pred             cEEEEEEECCCHhH
Q 030364           84 AAAVVVYDITSMDS   97 (178)
Q Consensus        84 d~~i~v~d~~~~~s   97 (178)
                       +++=|=++.+++.
T Consensus       377 -GvVRVenv~~pe~  389 (572)
T KOG2423|consen  377 -GVVRVENVKNPED  389 (572)
T ss_pred             -ceeeeeecCCHHH
Confidence             4666777777653

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.66  E-value=4.2e-05  Score=53.50  Aligned_cols=23  Identities=26%  Similarity=0.400  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCc
Q 030364           12 KLVLLGDMGTGKTSLVLRFVKGQ   34 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~~~   34 (178)
                      -|+++|++|||||||++-+.+-.
T Consensus        31 fvsilGpSGcGKSTLLriiAGL~   53 (248)
T COG1116          31 FVAILGPSGCGKSTLLRLIAGLE   53 (248)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999988743

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=97.64  E-value=6.4e-05  Score=51.53  Aligned_cols=25  Identities=24%  Similarity=0.349  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCcC
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVKGQF   35 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~~~~   35 (178)
                      =.++++|++|||||||++.+-+-+.
T Consensus        29 evv~iiGpSGSGKSTlLRclN~LE~   53 (240)
T COG1126          29 EVVVIIGPSGSGKSTLLRCLNGLEE   53 (240)
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCcC
Confidence            3689999999999999999876443

>TIGR00235 udk uridine kinase

Probab=97.64  E-value=7.6e-05  Score=51.59  Aligned_cols=26  Identities=23%  Similarity=0.371  Sum_probs=22.8

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHHh
Q 030364            7 KNIQVKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus         7 ~~~~~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      +++..-|+|+|++|||||||++.+.+
T Consensus         3 ~~~g~vi~I~G~sGsGKSTl~~~l~~   28 (207)
T TIGR00235         3 KPKGIIIGIGGGSGSGKTTVARKIYE   28 (207)
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHHHH
Confidence            45567899999999999999999875

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.64  E-value=0.00029  Score=53.40  Aligned_cols=23  Identities=22%  Similarity=0.511  Sum_probs=19.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      ..-++++|++||||||++..|..
T Consensus       223 ~~vi~lvGptGvGKTTtaaKLA~  245 (432)
T PRK12724        223 RKVVFFVGPTGSGKTTSIAKLAA  245 (432)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            34688999999999999998874

>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.63  E-value=2.6e-05  Score=57.72  Aligned_cols=93  Identities=15%  Similarity=0.189  Sum_probs=52.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhC--------------cCCCC-------ccCceeeeEEEEEE-------------EeC
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVKG--------------QFFDF-------QESTIGAAFFTQVL-------------SLN   55 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~~--------------~~~~~-------~~~~~~~~~~~~~~-------------~~~   55 (178)
                      .--|+++|..|+||||.+-.|...              .|...       .....+.+++....             ...
T Consensus       101 psVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~fK  180 (483)
T KOG0780|consen  101 PSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDRFK  180 (483)
T ss_pred             CcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHHHH
Confidence            445788999999999999877541              01000       00001111111111             113


Q ss_pred             CeEEEEEEEeCCCchhhh-----ccc-hhhhcCCcEEEEEEECCCHhHHHHHH
Q 030364           56 EVTIKFDIWDTAGQERYH-----SLA-PMYYRGAAAAVVVYDITSMDSFERAK  102 (178)
Q Consensus        56 ~~~~~~~i~d~~g~~~~~-----~~~-~~~~~~~d~~i~v~d~~~~~s~~~~~  102 (178)
                      ..++.+.|.||+|.+.-.     .+. ..-.-..|-+|+|.|++-.+.-+...
T Consensus       181 ke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa  233 (483)
T KOG0780|consen  181 KENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQA  233 (483)
T ss_pred             hcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHH
Confidence            456889999999964322     111 11134579999999999876554433

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=97.62  E-value=7e-05  Score=48.32  Aligned_cols=21  Identities=38%  Similarity=0.708  Sum_probs=18.9

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q 030364           13 LVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus        13 i~v~G~~~~GKStl~~~l~~~   33 (178)
                      |+++|++|+|||||++.|...
T Consensus         2 i~i~GpsGsGKstl~~~L~~~   22 (137)
T cd00071           2 IVLSGPSGVGKSTLLKRLLEE   22 (137)
T ss_pred             EEEECCCCCCHHHHHHHHHhc
Confidence            689999999999999999864

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>PRK06217 hypothetical protein; Validated

Probab=97.62  E-value=6.4e-05  Score=50.94  Aligned_cols=23  Identities=22%  Similarity=0.458  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      ++|+|+|.+||||||+.+.|...
T Consensus         2 ~~I~i~G~~GsGKSTla~~L~~~   24 (183)
T PRK06217          2 MRIHITGASGSGTTTLGAALAER   24 (183)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            57999999999999999998864

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.61  E-value=0.00071  Score=51.85  Aligned_cols=85  Identities=15%  Similarity=0.110  Sum_probs=46.2

Q ss_pred             EEEEEEEeCCCchhhh----ccchhhhc---CCcEEEEEEECCCH-hHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcc
Q 030364           58 TIKFDIWDTAGQERYH----SLAPMYYR---GAAAAVVVYDITSM-DSFERAKKWVQELQRQGNPNLIMFLVANKVDLEE  129 (178)
Q Consensus        58 ~~~~~i~d~~g~~~~~----~~~~~~~~---~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~  129 (178)
                      .+.+.++|++|.....    .....++.   ...-.++|++++.. ..+..+   +..+...   . +--++.||.|...
T Consensus       299 ~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~---~~~f~~~---~-~~~vI~TKlDet~  371 (424)
T PRK05703        299 DCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDI---YKHFSRL---P-LDGLIFTKLDETS  371 (424)
T ss_pred             CCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHH---HHHhCCC---C-CCEEEEecccccc
Confidence            3678899999974332    11222333   23466778888743 333332   2222211   1 2357899999632


Q ss_pred             ccccCHHHHHHHHHHcCCeEEEEe
Q 030364          130 KRKVKNEEGELYAQENGLSFLETS  153 (178)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~S  153 (178)
                      .    .-....+....++|+..++
T Consensus       372 ~----~G~i~~~~~~~~lPv~yit  391 (424)
T PRK05703        372 S----LGSILSLLIESGLPISYLT  391 (424)
T ss_pred             c----ccHHHHHHHHHCCCEEEEe
Confidence            1    1245556666788776654

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.60  E-value=0.00048  Score=51.64  Aligned_cols=24  Identities=25%  Similarity=0.423  Sum_probs=20.4

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      +.-.++++|++|+||||++..+..
T Consensus       205 ~~~ii~lvGptGvGKTTt~akLA~  228 (407)
T PRK12726        205 NHRIISLIGQTGVGKTTTLVKLGW  228 (407)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            355688999999999999988864

>PRK03839 putative kinase; Provisional

Probab=97.59  E-value=6.8e-05  Score=50.62  Aligned_cols=23  Identities=22%  Similarity=0.395  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      ++|+++|.|||||||+.+.|...
T Consensus         1 m~I~l~G~pGsGKsT~~~~La~~   23 (180)
T PRK03839          1 MIIAITGTPGVGKTTVSKLLAEK   23 (180)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            37999999999999999998764

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=97.59  E-value=4.7e-05  Score=50.55  Aligned_cols=22  Identities=32%  Similarity=0.543  Sum_probs=17.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 030364           12 KLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      ||+|.|.+++|||||++.|...
T Consensus         1 rI~i~G~~stGKTTL~~~L~~~   22 (163)
T PF13521_consen    1 RIVITGGPSTGKTTLIEALAAR   22 (163)
T ss_dssp             -EEEE--TTSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHc
Confidence            7999999999999999999854

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=97.58  E-value=6.2e-05  Score=48.35  Aligned_cols=24  Identities=21%  Similarity=0.351  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCc
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVKGQ   34 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~~~   34 (178)
                      -.++|+|++|+|||||++.+.+..
T Consensus        12 ~~~~i~G~nGsGKStLl~~l~g~~   35 (137)
T PF00005_consen   12 EIVAIVGPNGSGKSTLLKALAGLL   35 (137)
T ss_dssp             SEEEEEESTTSSHHHHHHHHTTSS
T ss_pred             CEEEEEccCCCccccceeeecccc
Confidence            468999999999999999888643

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=97.58  E-value=0.00042  Score=51.99  Aligned_cols=112  Identities=18%  Similarity=0.197  Sum_probs=60.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCc---eeeeEE------------------EEEEEe---------CCeEE
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQEST---IGAAFF------------------TQVLSL---------NEVTI   59 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~---~~~~~~------------------~~~~~~---------~~~~~   59 (178)
                      .-.|+++|+.|+||||-+-.|........-...   .+++.+                  .....-         .-..+
T Consensus       203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~  282 (407)
T COG1419         203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC  282 (407)
T ss_pred             CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence            667899999999999999887653320101111   111110                  000000         12346


Q ss_pred             EEEEEeCCCchhhhcc----chhhhcC--CcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCC
Q 030364           60 KFDIWDTAGQERYHSL----APMYYRG--AAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDL  127 (178)
Q Consensus        60 ~~~i~d~~g~~~~~~~----~~~~~~~--~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~  127 (178)
                      .+.++||.|...++..    ...++..  ..-..+|++++..  .+.+...+..+.....    --+++||.|.
T Consensus       283 d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K--~~dlkei~~~f~~~~i----~~~I~TKlDE  350 (407)
T COG1419         283 DVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK--YEDLKEIIKQFSLFPI----DGLIFTKLDE  350 (407)
T ss_pred             CEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc--hHHHHHHHHHhccCCc----ceeEEEcccc
Confidence            7889999997655432    2233332  2345667777753  2334444444443322    2567899995

>KOG1533 consensus Predicted GTPase [General function prediction only]

Probab=97.57  E-value=5.7e-05  Score=52.31  Aligned_cols=69  Identities=17%  Similarity=0.123  Sum_probs=36.5

Q ss_pred             EEEEEEEeCCCchhhhccc------hhhhcCCcEEEEEEECC------CHhHHHHHHHHHHHHHHhCCCCceEEEEEeCC
Q 030364           58 TIKFDIWDTAGQERYHSLA------PMYYRGAAAAVVVYDIT------SMDSFERAKKWVQELQRQGNPNLIMFLVANKV  125 (178)
Q Consensus        58 ~~~~~i~d~~g~~~~~~~~------~~~~~~~d~~i~v~d~~------~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~  125 (178)
                      +-...++|+||+-+.....      -..++.-+.-+.++...      ++..|-.  .++-.+.....-+.|-+=|+.|+
T Consensus        96 ~~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS--~lL~sl~tMl~melphVNvlSK~  173 (290)
T KOG1533|consen   96 TDHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFIS--SLLVSLATMLHMELPHVNVLSKA  173 (290)
T ss_pred             cCcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHH--HHHHHHHHHHhhcccchhhhhHh
Confidence            3445699999984432211      12344456555555443      4444433  22233333222356667788999


Q ss_pred             CCc
Q 030364          126 DLE  128 (178)
Q Consensus       126 D~~  128 (178)
                      |+.
T Consensus       174 Dl~  176 (290)
T KOG1533|consen  174 DLL  176 (290)
T ss_pred             HHH
Confidence            974

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=97.57  E-value=7e-05  Score=52.03  Aligned_cols=22  Identities=23%  Similarity=0.341  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 030364           12 KLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      -++|+|++|||||||++-+.+-
T Consensus        33 ~vaI~GpSGSGKSTLLniig~l   54 (226)
T COG1136          33 FVAIVGPSGSGKSTLLNLLGGL   54 (226)
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            4789999999999999987653

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=97.55  E-value=0.0032  Score=40.93  Aligned_cols=24  Identities=25%  Similarity=0.394  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCc
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVKGQ   34 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~~~   34 (178)
                      -.++++|++|+|||||++.+.+..
T Consensus        27 e~~~i~G~nGsGKStLl~~l~G~~   50 (144)
T cd03221          27 DRIGLVGRNGAGKSTLLKLIAGEL   50 (144)
T ss_pred             CEEEEECCCCCCHHHHHHHHcCCC
Confidence            367899999999999999988643

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>PRK08727 hypothetical protein; Validated

Probab=97.53  E-value=0.0014  Score=46.26  Aligned_cols=21  Identities=48%  Similarity=0.648  Sum_probs=19.0

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q 030364           13 LVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus        13 i~v~G~~~~GKStl~~~l~~~   33 (178)
                      +++.|++|+|||.|+..+...
T Consensus        44 l~l~G~~G~GKThL~~a~~~~   64 (233)
T PRK08727         44 LYLSGPAGTGKTHLALALCAA   64 (233)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            899999999999999998753

>PRK10646 ADP-binding protein; Provisional

Probab=97.52  E-value=0.0013  Score=42.98  Aligned_cols=23  Identities=35%  Similarity=0.668  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCc
Q 030364           12 KLVLLGDMGTGKTSLVLRFVKGQ   34 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~~~   34 (178)
                      -|++-|.-|+|||||++.+...-
T Consensus        30 vi~L~GdLGaGKTtf~rgl~~~L   52 (153)
T PRK10646         30 VIYLYGDLGAGKTTFSRGFLQAL   52 (153)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHc
Confidence            47889999999999999997654

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=97.50  E-value=0.00011  Score=46.65  Aligned_cols=21  Identities=38%  Similarity=0.540  Sum_probs=19.1

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q 030364           13 LVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus        13 i~v~G~~~~GKStl~~~l~~~   33 (178)
                      |++.|++|+|||++++.+...
T Consensus         1 ill~G~~G~GKT~l~~~la~~   21 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQY   21 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHH
T ss_pred             CEEECcCCCCeeHHHHHHHhh
Confidence            689999999999999998864

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>PRK14532 adenylate kinase; Provisional

Probab=97.50  E-value=0.00011  Score=50.03  Aligned_cols=22  Identities=32%  Similarity=0.576  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      ++|+++|+|||||||+..+|..
T Consensus         1 ~~i~~~G~pGsGKsT~a~~la~   22 (188)
T PRK14532          1 MNLILFGPPAAGKGTQAKRLVE   22 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999875

>PRK14530 adenylate kinase; Provisional

Probab=97.50  E-value=0.00011  Score=51.17  Aligned_cols=22  Identities=27%  Similarity=0.511  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      .+|+|+|+|||||||+.+.|..
T Consensus         4 ~~I~i~G~pGsGKsT~~~~La~   25 (215)
T PRK14530          4 PRILLLGAPGAGKGTQSSNLAE   25 (215)
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4899999999999999999864

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=97.49  E-value=9.6e-05  Score=52.38  Aligned_cols=21  Identities=29%  Similarity=0.433  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 030364           12 KLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~   32 (178)
                      -++++|+.|||||||++.+.+
T Consensus        30 i~~iiGpNG~GKSTLLk~l~g   50 (258)
T COG1120          30 ITGILGPNGSGKSTLLKCLAG   50 (258)
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            478999999999999999987

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=97.49  E-value=0.00011  Score=46.51  Aligned_cols=21  Identities=24%  Similarity=0.414  Sum_probs=18.9

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q 030364           13 LVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus        13 i~v~G~~~~GKStl~~~l~~~   33 (178)
                      |+|.|.+||||||+++.|...
T Consensus         1 I~i~G~~GsGKtTia~~L~~~   21 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAER   21 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999998754

...

>PRK01889 GTPase RsgA; Reviewed

Probab=97.47  E-value=0.00016  Score=54.06  Aligned_cols=24  Identities=33%  Similarity=0.567  Sum_probs=21.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCc
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVKGQ   34 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~~~   34 (178)
                      -+++++|.+|+|||||+|.+.+..
T Consensus       196 ~~~~lvG~sgvGKStLin~L~g~~  219 (356)
T PRK01889        196 KTVALLGSSGVGKSTLVNALLGEE  219 (356)
T ss_pred             CEEEEECCCCccHHHHHHHHHHhc
Confidence            479999999999999999998744

>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop

Probab=97.46  E-value=0.00047  Score=43.41  Aligned_cols=25  Identities=32%  Similarity=0.559  Sum_probs=20.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCc
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVKGQ   34 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~~~   34 (178)
                      .--|++-|+-|+|||||++.+...-
T Consensus        15 g~vi~L~GdLGaGKTtf~r~l~~~l   39 (123)
T PF02367_consen   15 GDVILLSGDLGAGKTTFVRGLARAL   39 (123)
T ss_dssp             -EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHc
Confidence            3458888999999999999987654

They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=97.46  E-value=0.00014  Score=46.40  Aligned_cols=26  Identities=23%  Similarity=0.331  Sum_probs=22.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCcCC
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVKGQFF   36 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~~~~~   36 (178)
                      -.++++|++|+||||+++.+...-..
T Consensus         3 ~~~~l~G~~G~GKTtl~~~l~~~~~~   28 (148)
T smart00382        3 EVILIVGPPGSGKTTLARALARELGP   28 (148)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhccCC
Confidence            47899999999999999999865543

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=97.45  E-value=0.00013  Score=49.53  Aligned_cols=22  Identities=32%  Similarity=0.516  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 030364           12 KLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      .++++|++|+|||||++.|.+.
T Consensus         4 ~i~l~G~sGsGKsTl~~~l~~~   25 (186)
T PRK10078          4 LIWLMGPSGSGKDSLLAALRQR   25 (186)
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            6899999999999999999654

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=97.45  E-value=0.00013  Score=49.20  Aligned_cols=22  Identities=23%  Similarity=0.312  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 030364           12 KLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      .++|+|++||||||+++.|...
T Consensus         3 ~~~i~G~sGsGKttl~~~l~~~   24 (179)
T TIGR02322         3 LIYVVGPSGAGKDTLLDYARAR   24 (179)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999998764

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>PRK13949 shikimate kinase; Provisional

Probab=97.44  E-value=0.00015  Score=48.52  Aligned_cols=21  Identities=38%  Similarity=0.687  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 030364           12 KLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~   32 (178)
                      +|+|+|++|+||||+.+.|..
T Consensus         3 ~I~liG~~GsGKstl~~~La~   23 (169)
T PRK13949          3 RIFLVGYMGAGKTTLGKALAR   23 (169)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            799999999999999998875

>PRK14531 adenylate kinase; Provisional

Probab=97.44  E-value=0.00015  Score=49.08  Aligned_cols=24  Identities=29%  Similarity=0.549  Sum_probs=20.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhC
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      +.+|+++|+|||||||+.+.+...
T Consensus         2 ~~~i~i~G~pGsGKsT~~~~la~~   25 (183)
T PRK14531          2 KQRLLFLGPPGAGKGTQAARLCAA   25 (183)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            358999999999999999988653

>cd01131 PilT Pilus retraction ATPase PilT

Probab=97.43  E-value=0.0011  Score=45.62  Aligned_cols=22  Identities=18%  Similarity=0.430  Sum_probs=19.3

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCc
Q 030364           13 LVLLGDMGTGKTSLVLRFVKGQ   34 (178)
Q Consensus        13 i~v~G~~~~GKStl~~~l~~~~   34 (178)
                      |+|+|++|+||||+++.+....
T Consensus         4 ilI~GptGSGKTTll~~ll~~~   25 (198)
T cd01131           4 VLVTGPTGSGKSTTLAAMIDYI   25 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            7899999999999999887643

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>COG0802 Predicted ATPase or kinase [General function prediction only]

Probab=97.42  E-value=0.0012  Score=42.73  Aligned_cols=26  Identities=42%  Similarity=0.556  Sum_probs=21.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCcC
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVKGQF   35 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~~~~   35 (178)
                      .--|++-|+-|+|||||.+.+..+--
T Consensus        25 g~Vv~L~GdLGAGKTtf~rgi~~~Lg   50 (149)
T COG0802          25 GDVVLLSGDLGAGKTTLVRGIAKGLG   50 (149)
T ss_pred             CCEEEEEcCCcCChHHHHHHHHHHcC
Confidence            34577889999999999999886544

>cd03110 Fer4_NifH_child This protein family's function is unkown

Probab=97.41  E-value=0.0019  Score=43.50  Aligned_cols=86  Identities=24%  Similarity=0.251  Sum_probs=58.4

Q ss_pred             eEEEEEEEeCCCchhhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHH
Q 030364           57 VTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNE  136 (178)
Q Consensus        57 ~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~  136 (178)
                      ..+.+.++|+|+...  ......+..+|.+++++..+. .+...+...++.+...   +.|+.+|+|++|....   ...
T Consensus        91 ~~~d~viiDtpp~~~--~~~~~~l~~aD~vliv~~~~~-~~~~~~~~~~~~l~~~---~~~~~vV~N~~~~~~~---~~~  161 (179)
T cd03110          91 EGAELIIIDGPPGIG--CPVIASLTGADAALLVTEPTP-SGLHDLERAVELVRHF---GIPVGVVINKYDLNDE---IAE  161 (179)
T ss_pred             cCCCEEEEECcCCCc--HHHHHHHHcCCEEEEEecCCc-ccHHHHHHHHHHHHHc---CCCEEEEEeCCCCCcc---hHH
Confidence            457889999996532  223455688999999999884 3555566666655543   4567899999996432   234


Q ss_pred             HHHHHHHHcCCeEEE
Q 030364          137 EGELYAQENGLSFLE  151 (178)
Q Consensus       137 ~~~~~~~~~~~~~~~  151 (178)
                      +..++.+..+++++.
T Consensus       162 ~~~~~~~~~~~~vl~  176 (179)
T cd03110         162 EIEDYCEEEGIPILG  176 (179)
T ss_pred             HHHHHHHHcCCCeEE
Confidence            556677777877654

It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.

>PRK04195 replication factor C large subunit; Provisional

Probab=97.41  E-value=0.0043  Score=48.52  Aligned_cols=24  Identities=38%  Similarity=0.534  Sum_probs=21.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhC
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      ...+++.|++|+||||+++.+...
T Consensus        39 ~~~lLL~GppG~GKTtla~ala~e   62 (482)
T PRK04195         39 KKALLLYGPPGVGKTSLAHALAND   62 (482)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            557899999999999999998764

>PRK00625 shikimate kinase; Provisional

Probab=97.41  E-value=0.00017  Score=48.37  Aligned_cols=22  Identities=32%  Similarity=0.356  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      ++|+++|.|||||||+.+.+..
T Consensus         1 ~~I~LiG~pGsGKTT~~k~La~   22 (173)
T PRK00625          1 MQIFLCGLPTVGKTSFGKALAK   22 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999998864

>PF03215 Rad17: Rad17 cell cycle checkpoint protein

Probab=97.41  E-value=0.002  Score=50.62  Aligned_cols=55  Identities=4%  Similarity=-0.001  Sum_probs=35.5

Q ss_pred             eEEEEEeCCCCccccc-c-------CHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHhhc
Q 030364          117 IMFLVANKVDLEEKRK-V-------KNEEGELYAQENGLSFLETSAKSAHNVNELFYEIGDCT  171 (178)
Q Consensus       117 ~~ivv~nK~D~~~~~~-~-------~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  171 (178)
                      |+|+|++-+|...... .       ...-..++....++..+..++....-+...+..|+..-
T Consensus       167 PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i~~I~FNpIa~T~mkKaL~rI~~~E  229 (519)
T PF03215_consen  167 PLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGITRIKFNPIAPTFMKKALKRILKKE  229 (519)
T ss_pred             CEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCceEEEecCCCHHHHHHHHHHHHHHH
Confidence            9999999665322111 0       00112334455678889998888888888888887754

>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=97.41  E-value=0.00012  Score=55.15  Aligned_cols=94  Identities=20%  Similarity=0.188  Sum_probs=52.5

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHHhC----cC------CCCccCc-----------eeeeEEEEE-------E------
Q 030364            7 KNIQVKLVLLGDMGTGKTSLVLRFVKG----QF------FDFQEST-----------IGAAFFTQV-------L------   52 (178)
Q Consensus         7 ~~~~~~i~v~G~~~~GKStl~~~l~~~----~~------~~~~~~~-----------~~~~~~~~~-------~------   52 (178)
                      ..+...|+++|..|+||||.+-.|...    ..      ...+.|.           .+.+++...       +      
T Consensus        97 ~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~  176 (451)
T COG0541          97 KKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALE  176 (451)
T ss_pred             CCCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHH
Confidence            345678999999999999988776541    00      0001111           111111110       0      


Q ss_pred             EeCCeEEEEEEEeCCCchhhhcc------chhhhcCCcEEEEEEECCCHhHHHH
Q 030364           53 SLNEVTIKFDIWDTAGQERYHSL------APMYYRGAAAAVVVYDITSMDSFER  100 (178)
Q Consensus        53 ~~~~~~~~~~i~d~~g~~~~~~~------~~~~~~~~d~~i~v~d~~~~~s~~~  100 (178)
                      ......+.+.|+||.|.......      ...-.-+.|=+++|+|+.-.+.-.+
T Consensus       177 ~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~  230 (451)
T COG0541         177 KAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVN  230 (451)
T ss_pred             HHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHH
Confidence            00223367889999996433221      1122346789999999997654444

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=97.41  E-value=0.00017  Score=48.34  Aligned_cols=23  Identities=26%  Similarity=0.358  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      =.++|+|++|+|||||+|-+.+=
T Consensus        26 e~vAi~GpSGaGKSTLLnLIAGF   48 (231)
T COG3840          26 EIVAILGPSGAGKSTLLNLIAGF   48 (231)
T ss_pred             cEEEEECCCCccHHHHHHHHHhc
Confidence            37899999999999999987763

>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=97.40  E-value=0.00098  Score=48.65  Aligned_cols=23  Identities=39%  Similarity=0.492  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCc
Q 030364           12 KLVLLGDMGTGKTSLVLRFVKGQ   34 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~~~   34 (178)
                      =|++-||||.|||||++.|...-
T Consensus       179 liLlhGPPGTGKTSLCKaLaQkL  201 (423)
T KOG0744|consen  179 LILLHGPPGTGKTSLCKALAQKL  201 (423)
T ss_pred             EEEEeCCCCCChhHHHHHHHHhh
Confidence            46777999999999999998643

>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell

Probab=97.40  E-value=0.0063  Score=40.75  Aligned_cols=84  Identities=14%  Similarity=0.049  Sum_probs=50.8

Q ss_pred             EEEEEeCCCchhhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHH
Q 030364           60 KFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGE  139 (178)
Q Consensus        60 ~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~  139 (178)
                      .+.++|+|+....  .....+..+|.++++.+.+. .+...+..+++.+...  ......+++|+.+.....  ..+...
T Consensus        64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~~~~~--~~~~~~iv~N~~~~~~~~--~~~~~~  136 (179)
T cd02036          64 DYILIDSPAGIER--GFITAIAPADEALLVTTPEI-SSLRDADRVKGLLEAL--GIKVVGVIVNRVRPDMVE--GGDMVE  136 (179)
T ss_pred             CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCCc-chHHHHHHHHHHHHHc--CCceEEEEEeCCcccccc--hhhHHH
Confidence            6789999975332  23455688999999998775 3455555555555543  223467889999854322  122233


Q ss_pred             HHHHHcCCeEE
Q 030364          140 LYAQENGLSFL  150 (178)
Q Consensus       140 ~~~~~~~~~~~  150 (178)
                      .+.+..+.+++
T Consensus       137 ~~~~~~~~~v~  147 (179)
T cd02036         137 DIEEILGVPLL  147 (179)
T ss_pred             HHHHHhCCCEE
Confidence            44455666654

The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.

>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]

Probab=97.40  E-value=0.00014  Score=46.86  Aligned_cols=25  Identities=28%  Similarity=0.515  Sum_probs=22.4

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHHh
Q 030364            8 NIQVKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus         8 ~~~~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      ....+|+|.|.||+||||+..++..
T Consensus         5 r~~PNILvtGTPG~GKstl~~~lae   29 (176)
T KOG3347|consen    5 RERPNILVTGTPGTGKSTLAERLAE   29 (176)
T ss_pred             hcCCCEEEeCCCCCCchhHHHHHHH
Confidence            4578999999999999999999874

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=97.40  E-value=0.00018  Score=46.56  Aligned_cols=22  Identities=23%  Similarity=0.533  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 030364           12 KLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      .|+|+|..|+|||||++.|++.
T Consensus         2 vv~VvG~~~sGKTTl~~~Li~~   23 (140)
T PF03205_consen    2 VVQVVGPKNSGKTTLIRKLINE   23 (140)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999999864

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=97.40  E-value=0.00018  Score=48.45  Aligned_cols=22  Identities=36%  Similarity=0.490  Sum_probs=19.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHH
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFV   31 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~   31 (178)
                      .-.++++|++|+|||||++.+.
T Consensus        21 G~~~~l~G~nG~GKSTLl~~il   42 (176)
T cd03238          21 NVLVVVTGVSGSGKSTLVNEGL   42 (176)
T ss_pred             CCEEEEECCCCCCHHHHHHHHh
Confidence            4478999999999999999875

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>PRK02496 adk adenylate kinase; Provisional

Probab=97.39  E-value=0.0002  Score=48.56  Aligned_cols=22  Identities=27%  Similarity=0.581  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      ++++|+|+|||||||+.+.|..
T Consensus         2 ~~i~i~G~pGsGKst~a~~la~   23 (184)
T PRK02496          2 TRLIFLGPPGAGKGTQAVVLAE   23 (184)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            6899999999999999998874

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=97.38  E-value=0.00018  Score=44.12  Aligned_cols=22  Identities=41%  Similarity=0.771  Sum_probs=19.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHH
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFV   31 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~   31 (178)
                      .-.++++|++|+|||||++.+.
T Consensus        15 ge~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820          15 KVGVLITGDSGIGKTELALELI   36 (107)
T ss_pred             CEEEEEEcCCCCCHHHHHHHhh
Confidence            3468999999999999999875

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=97.38  E-value=0.00019  Score=48.74  Aligned_cols=24  Identities=25%  Similarity=0.477  Sum_probs=21.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhC
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      .-.++++|++|+||||+++.+.+-
T Consensus        25 g~~i~I~G~tGSGKTTll~aL~~~   48 (186)
T cd01130          25 RKNILISGGTGSGKTTLLNALLAF   48 (186)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhh
Confidence            457999999999999999998864

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional

Probab=97.38  E-value=0.0053  Score=44.67  Aligned_cols=87  Identities=16%  Similarity=0.187  Sum_probs=48.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhc--CCcEEEE
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYR--GAAAAVV   88 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~--~~d~~i~   88 (178)
                      -.|+|.|.+||||||+++.|-...+                          ..+|......+.........  ..+.+.+
T Consensus         7 ~~i~i~G~~GsGKtt~~~~l~~~g~--------------------------~~~d~~~~~L~~~l~~~~~~~~~~~~~av   60 (288)
T PRK05416          7 RLVIVTGLSGAGKSVALRALEDLGY--------------------------YCVDNLPPSLLPKLVELLAQSGGIRKVAV   60 (288)
T ss_pred             eEEEEECCCCCcHHHHHHHHHHcCC--------------------------eEECCcCHHHHHHHHHHHHhcCCCCCeEE
Confidence            3688999999999999999842111                          12333333222222222222  2356788


Q ss_pred             EEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCC
Q 030364           89 VYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVD  126 (178)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D  126 (178)
                      ++|+.+.+.+......+..+...   +.++.++.-+++
T Consensus        61 ~iD~r~~~~~~~~~~~~~~L~~~---g~~~~iI~L~a~   95 (288)
T PRK05416         61 VIDVRSRPFFDDLPEALDELRER---GIDVRVLFLDAS   95 (288)
T ss_pred             EEccCchhhHHHHHHHHHHHHHc---CCcEEEEEEECC
Confidence            88888765444555555666554   333444444444

>TIGR03263 guanyl_kin guanylate kinase

Probab=97.37  E-value=0.00017  Score=48.57  Aligned_cols=22  Identities=32%  Similarity=0.570  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 030364           12 KLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      -|+++|++||||||+++.|...
T Consensus         3 ii~l~G~~GsGKsTl~~~L~~~   24 (180)
T TIGR03263         3 LIVISGPSGVGKSTLVKALLEE   24 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHcc
Confidence            4789999999999999999864

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>PRK05480 uridine/cytidine kinase; Provisional

Probab=97.37  E-value=0.00027  Score=48.88  Aligned_cols=26  Identities=19%  Similarity=0.357  Sum_probs=22.7

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHHhC
Q 030364            8 NIQVKLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus         8 ~~~~~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      .+...|+|.|++|||||||++.|...
T Consensus         4 ~~~~iI~I~G~sGsGKTTl~~~l~~~   29 (209)
T PRK05480          4 KKPIIIGIAGGSGSGKTTVASTIYEE   29 (209)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            35789999999999999999998763

>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]

Probab=97.37  E-value=0.00017  Score=47.64  Aligned_cols=21  Identities=24%  Similarity=0.414  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHH
Q 030364           11 VKLVLLGDMGTGKTSLVLRFV   31 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~   31 (178)
                      ++|+|.|.||+||||+.+.|.
T Consensus         1 m~I~ITGTPGvGKTT~~~~L~   21 (180)
T COG1936           1 MLIAITGTPGVGKTTVCKLLR   21 (180)
T ss_pred             CeEEEeCCCCCchHHHHHHHH
Confidence            579999999999999999887

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=97.37  E-value=0.00018  Score=48.81  Aligned_cols=22  Identities=23%  Similarity=0.459  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      ..|+++|++||||||+++.+..
T Consensus         4 ~ii~i~G~~GsGKsTl~~~l~~   25 (188)
T TIGR01360         4 KIIFIVGGPGSGKGTQCEKIVE   25 (188)
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            3688999999999999999873

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>PTZ00088 adenylate kinase 1; Provisional

Probab=97.37  E-value=0.0002  Score=50.27  Aligned_cols=23  Identities=35%  Similarity=0.563  Sum_probs=20.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      .++|+|+|+|||||||+.+.|..
T Consensus         6 ~mrIvl~G~PGsGK~T~a~~La~   28 (229)
T PTZ00088          6 PLKIVLFGAPGVGKGTFAEILSK   28 (229)
T ss_pred             CceEEEECCCCCCHHHHHHHHHH
Confidence            47899999999999999999875

>PRK13833 conjugal transfer protein TrbB; Provisional

Probab=97.36  E-value=0.0013  Score=48.48  Aligned_cols=24  Identities=29%  Similarity=0.577  Sum_probs=21.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhC
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      ..+|+|.|.+||||||+++.|...
T Consensus       144 ~~nilI~G~tGSGKTTll~aL~~~  167 (323)
T PRK13833        144 RLNIVISGGTGSGKTTLANAVIAE  167 (323)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            458999999999999999999864

>PLN02200 adenylate kinase family protein

Probab=97.36  E-value=0.00031  Score=49.55  Aligned_cols=24  Identities=25%  Similarity=0.394  Sum_probs=20.8

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      ..+.|+|+|+|||||||+...+..
T Consensus        42 ~~~ii~I~G~PGSGKsT~a~~La~   65 (234)
T PLN02200         42 TPFITFVLGGPGSGKGTQCEKIVE   65 (234)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            356799999999999999998875

>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=97.36  E-value=0.0022  Score=49.93  Aligned_cols=87  Identities=7%  Similarity=-0.009  Sum_probs=48.0

Q ss_pred             EEEEEEECCCHh---HHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHH
Q 030364           85 AAVVVYDITSMD---SFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVN  161 (178)
Q Consensus        85 ~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  161 (178)
                      .+|+|=|+=+.-   ..+..+..++...+  ....|+|++++-+-......-...-...+-...++..+..+.-...-++
T Consensus       196 ~liLveDLPn~~~~d~~~~f~evL~~y~s--~g~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri~~IsFNPIa~T~MK  273 (634)
T KOG1970|consen  196 KLILVEDLPNQFYRDDSETFREVLRLYVS--IGRCPLIFIITDSLSNGNNNQDRLFPKDIQEEPRISNISFNPIAPTIMK  273 (634)
T ss_pred             eEEEeeccchhhhhhhHHHHHHHHHHHHh--cCCCcEEEEEeccccCCCcchhhhchhhhhhccCcceEeecCCcHHHHH
Confidence            357776665433   33333433443322  3567889988877653221111111222234456777777777777788


Q ss_pred             HHHHHHHhhccc
Q 030364          162 ELFYEIGDCTEC  173 (178)
Q Consensus       162 ~~~~~l~~~i~~  173 (178)
                      ..+..|+.....
T Consensus       274 K~L~ric~~e~~  285 (634)
T KOG1970|consen  274 KFLKRICRIEAN  285 (634)
T ss_pred             HHHHHHHHHhcc
Confidence            888777765543

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=97.35  E-value=0.00017  Score=53.10  Aligned_cols=22  Identities=36%  Similarity=0.543  Sum_probs=19.7

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCc
Q 030364           13 LVLLGDMGTGKTSLVLRFVKGQ   34 (178)
Q Consensus        13 i~v~G~~~~GKStl~~~l~~~~   34 (178)
                      ++++|++||||||+++.+.+-.
T Consensus        32 ~vllGPSGcGKSTlLr~IAGLe   53 (338)
T COG3839          32 VVLLGPSGCGKSTLLRMIAGLE   53 (338)
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            7899999999999999988744

>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP)

Probab=97.35  E-value=0.00018  Score=48.98  Aligned_cols=22  Identities=36%  Similarity=0.632  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 030364           12 KLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      +|+|+|+|||||||+.+.|...
T Consensus         1 ~I~i~G~pGsGKst~a~~La~~   22 (194)
T cd01428           1 RILLLGPPGSGKGTQAERLAKK   22 (194)
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999998753

This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=97.34  E-value=0.0002  Score=49.81  Aligned_cols=22  Identities=23%  Similarity=0.338  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 030364           12 KLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      .++++|++|+|||||++.+.+-
T Consensus        32 ~~~l~G~nGsGKSTLl~~i~Gl   53 (218)
T cd03255          32 FVAIVGPSGSGKSTLLNILGGL   53 (218)
T ss_pred             EEEEEcCCCCCHHHHHHHHhCC
Confidence            6899999999999999999864

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=97.34  E-value=0.0002  Score=49.07  Aligned_cols=21  Identities=24%  Similarity=0.510  Sum_probs=18.8

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q 030364           13 LVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus        13 i~v~G~~~~GKStl~~~l~~~   33 (178)
                      |.|.|++|||||||++.|.+.
T Consensus         2 igi~G~~GsGKSTl~~~l~~~   22 (198)
T cd02023           2 IGIAGGSGSGKTTVAEEIIEQ   22 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            689999999999999998763

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>smart00072 GuKc Guanylate kinase homologues

Probab=97.34  E-value=0.0002  Score=48.61  Aligned_cols=23  Identities=30%  Similarity=0.547  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCc
Q 030364           12 KLVLLGDMGTGKTSLVLRFVKGQ   34 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~~~   34 (178)
                      =|+++|++||||+|+++.|....
T Consensus         4 ~ivl~Gpsg~GK~tl~~~L~~~~   26 (184)
T smart00072        4 PIVLSGPSGVGKGTLLAELIQEI   26 (184)
T ss_pred             EEEEECCCCCCHHHHHHHHHhcC
Confidence            47899999999999999998763

Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.33  E-value=0.0002  Score=49.80  Aligned_cols=21  Identities=24%  Similarity=0.520  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 030364           12 KLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~   32 (178)
                      -|+++|++|+|||||++.+-+
T Consensus        32 ~VaiIG~SGaGKSTLLR~lng   52 (258)
T COG3638          32 MVAIIGPSGAGKSTLLRSLNG   52 (258)
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            589999999999999999875

>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein

Probab=97.33  E-value=0.00024  Score=49.96  Aligned_cols=26  Identities=27%  Similarity=0.533  Sum_probs=22.5

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHHhC
Q 030364            8 NIQVKLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus         8 ~~~~~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      ...++++|+|.+|||||+|+..++..
T Consensus        11 ~~~fr~viIG~sGSGKT~li~~lL~~   36 (241)
T PF04665_consen   11 KDPFRMVIIGKSGSGKTTLIKSLLYY   36 (241)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHh
Confidence            34689999999999999999888754

This is thought to be an ATPase involved in viral DNA packaging [].

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=97.32  E-value=0.0002  Score=50.56  Aligned_cols=21  Identities=29%  Similarity=0.509  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 030364           12 KLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~   32 (178)
                      -+.++|+.|+|||||++.+++
T Consensus        32 ~~~iiGPNGaGKSTLlK~iLG   52 (254)
T COG1121          32 ITALIGPNGAGKSTLLKAILG   52 (254)
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            478999999999999999997

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.32  E-value=0.0002  Score=49.13  Aligned_cols=22  Identities=27%  Similarity=0.418  Sum_probs=18.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHH
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFV   31 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~   31 (178)
                      .--.+++|++|||||||++.+-
T Consensus        33 ~~VTAlIGPSGcGKST~LR~lN   54 (253)
T COG1117          33 NKVTALIGPSGCGKSTLLRCLN   54 (253)
T ss_pred             CceEEEECCCCcCHHHHHHHHH
Confidence            3346899999999999998763

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	178
2efc_B	181	Ara7-GdpATVPS9A Length = 181		1e-65
1huq_A	164	1.8a Crystal Structure Of The Monomeric Gtpase Rab5		2e-57
1tu3_A	171	Crystal Structure Of Rab5 Complex With Rabaptin5 C-		1e-56
1n6h_A	170	Crystal Structure Of Human Rab5a Length = 170		1e-56
2hei_A	179	Crystal Structure Of Human Rab5b In Complex With Gd		2e-56
1n6i_A	170	Crystal Structure Of Human Rab5a A30p Mutant Comple		2e-56
1z07_A	166	Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166		2e-56
1z0d_A	167	Gdp-bound Rab5c Gtpase Length = 167		2e-56
1n6o_A	170	Crystal Structure Of Human Rab5a A30k Mutant Comple		3e-56
1n6n_A	170	Crystal Structure Of Human Rab5a A30r Mutant Comple		3e-56
1n6p_A	170	Crystal Structure Of Human Rab5a A30e Mutant Comple		3e-56
1n6r_A	170	Crystal Structure Of Human Rab5a A30l Mutant Comple		4e-56
3mjh_A	168	Crystal Structure Of Human Rab5a In Complex With Th		7e-56
1tu4_A	171	Crystal Structure Of Rab5-Gdp Complex Length = 171		2e-55
1ek0_A	170	Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 17		1e-44
2fg5_A	192	Crystal Structure Of Human Rab31 In Complex With A		6e-39
1yvd_A	169	Gppnhp-Bound Rab22 Gtpase Length = 169		7e-37
2rhd_A	175	Crystal Structure Of Cryptosporidium Parvum Small G		1e-35
1z0j_A	170	Structure Of Gtp-Bound Rab22q64l Gtpase In Complex		1e-35
1z0a_A	174	Gdp-Bound Rab2a Gtpase Length = 174		2e-35
1z08_A	170	Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170		9e-35
1yzq_A	170	Gppnhp-Bound Rab6 Gtpase Length = 170		1e-34
2fe4_A	171	The Crystal Structure Of Human Neuronal Rab6b In It		1e-34
2gil_A	162	Structure Of The Extremely Slow Gtpase Rab6a In The		1e-34
2y8e_A	179	Crystal Structure Of D. Melanogaster Rab6 Gtpase Bo		2e-34
4dkx_A	216	Crystal Structure Of The Rab 6a'(Q72l) Length = 216		9e-34
1yzu_A	170	Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Leng		9e-34
2a5j_A	191	Crystal Structure Of Human Rab2b Length = 191		1e-33
3cwz_A	188	Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188		1e-33
1yzt_A	184	Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Leng		1e-33
3bbp_A	211	Rab6-Gtp:gcc185 Rab Binding Domain Complex Length =		2e-33
1yzk_A	184	Gppnhp Bound Rab11 Gtpase Length = 184		3e-33
1oiv_A	191	X-Ray Structure Of The Small G Protein Rab11a In Co		4e-33
2f9l_A	199	3d Structure Of Inactive Human Rab11b Gtpase Length		4e-33
1d5c_A	162	Crystal Structure Of Plasmodium Falciparum Rab6 Com		1e-32
3cpj_B	223	Crystal Structure Of Ypt31 In Complex With Yeast Ra		1e-32
2hv8_A	172	Crystal Structure Of Gtp-Bound Rab11 In Complex Wit		2e-32
1z0f_A	179	Gdp-Bound Rab14 Gtpase Length = 179		3e-32
1oiw_A	191	X-ray Structure Of The Small G Protein Rab11a In Co		3e-32
3bfk_A	181	Crystal Structure Of Plasmodium Falciparum Rab11a I		4e-32
2gzd_A	173	Crystal Structure Of Rab11 In Complex With Rab11-Fi		4e-32
2d7c_A	167	Crystal Structure Of Human Rab11 In Complex With Fi		5e-32
2ew1_A	201	Crystal Structure Of Rab30 In Complex With A Gtp An		1e-31
3jza_A	175	Crystal Structure Of Human Rab1b In Complex With Th		1e-31
4i1o_A	181	Crystal Structure Of The Legionella Pneumophila Gap		1e-31
4drz_A	196	Crystal Structure Of Human Rab14 Length = 196		2e-31
4fmd_F	164	Espg-Rab1 Complex Structure At 3.05 A Length = 164		3e-31
3clv_A	208	Crystal Structure Of Rab5a From Plasmodium Falcipar		3e-31
4fmb_B	171	Vira-Rab1 Complex Structure Length = 171		4e-31
4fmc_B	171	Espg-Rab1 Complex Length = 171		4e-31
3tkl_A	196	Crystal Structure Of The Gtp-Bound Rab1a In Complex		4e-31
2fol_A	191	Crystal Structure Of Human Rab1a In Complex With Gd		4e-31
3l0i_B	199	Complex Structure Of Sidm/drra With The Wild Type R		5e-31
3sfv_A	181	Crystal Structure Of The Gdp-Bound Rab1a S25n Mutan		7e-31
3tso_A	178	Structure Of The Cancer Associated Rab25 Protein In		2e-30
2oil_A	193	Crystal Structure Of Human Rab25 In Complex With Gd		3e-30
2wwx_A	175	Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Ra		5e-30
2g6b_A	180	Crystal Structure Of Human Rab26 In Complex With A		6e-30
1yzn_A	185	Gppnhp-Bound Ypt1p Gtpase Length = 185		8e-30
2bcg_Y	206	Structure Of Doubly Prenylated Ypt1:gdi Complex Len		9e-30
1ukv_Y	206	Structure Of Rabgdp-Dissociation Inhibitor In Compl		1e-29
2o52_A	200	Crystal Structure Of Human Rab4b In Complex With Gd		2e-29
1g17_A	170	Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)		2e-29
3rwm_B	185	Crystal Structure Of Ypt32 In Complex With Gppnhp L		5e-29
1g16_A	170	Crystal Structure Of Sec4-Gdp Length = 170		6e-29
3qbt_A	174	Crystal Structure Of Ocrl1 540-678 In Complex With		6e-29
2fu5_C	183	Structure Of Rab8 In Complex With Mss4 Length = 183		6e-29
2eqb_A	174	Crystal Structure Of The Rab Gtpase Sec4p, The Sec2		9e-29
3cph_A	213	Crystal Structure Of Sec4 In Complex With Rab-Gdi L		9e-29
2il1_A	192	Crystal Structure Of A Predicted Human Gtpase In Co		2e-28
2ocy_C	170	Complex Of The Guanine Exchange Factor Sec2p And Th		2e-28
2bmd_A	186	High Resolution Structure Of Gdp-Bound Human Rab4a		4e-28
3tw8_B	181	Gef Domain Of Dennd 1b In Complex With Rab Gtpase R		7e-28
2hup_A	201	Crystal Structure Of Human Rab43 In Complex With Gd		1e-27
1yu9_A	175	Gppnhp-Bound Rab4a Length = 175		1e-27
1z0k_A	172	Structure Of Gtp-Bound Rab4q67l Gtpase In Complex W		8e-27
1vg0_B	207	The Crystal Structures Of The Rep-1 Protein In Comp		2e-26
3dz8_A	191	Crystal Structure Of Human Rab3b Gtpase Bound With		2e-26
1vg1_A	185	Gdp-bound Rab7 Length = 185		2e-26
3law_A	207	Structure Of Gtp-Bound L129f Mutant Rab7 Length = 2		5e-26
1x3s_A	195	Crystal Structure Of Human Rab18 In Complex With Gp		8e-26
1t91_A	207	Crystal Structure Of Human Small Gtpase Rab7(Gtp) L		1e-25
2gf9_A	189	Crystal Structure Of Human Rab3d In Complex With Gd		2e-25
3rab_A	169	Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169		2e-25
1ky2_A	182	Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182		5e-25
1zbd_A	203	Structural Basis Of Rab Effector Specificity: Cryst		7e-24
4fmc_F	117	Espg-Rab1 Complex Length = 117		2e-23
1z06_A	189	Gppnhp-Bound Rab33 Gtpase Length = 189		9e-23
1qg4_A	216	Canine Gdp-Ran F72y Mutant Length = 216		4e-22
2ocb_A	180	Crystal Structure Of Human Rab9b In Complex With A		5e-22
1z22_A	168	Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Spac		6e-22
3ea5_A	216	Kap95p Binding Induces The Switch Loops Of Rangdp T		1e-21
1qbk_C	216	Structure Of The Karyopherin Beta2-ran Gppnhp Nucle		1e-21
1qg2_A	216	Canine Gdp-Ran R76e Mutant Length = 216		1e-21
1a2k_C	216	Gdpran-Ntf2 Complex Length = 216		1e-21
1wa5_A	176	Crystal Structure Of The Exportin Cse1p Complexed W		1e-21
2g77_B	198	Crystal Structure Of Gyp1 Tbc Domain In Complex Wit		2e-21
1byu_A	216	Canine Gdp-Ran Length = 216		2e-21
2bku_A	177	Kap95p:rangtp Complex Length = 177		2e-21
4dxa_A	169	Co-Crystal Structure Of Rap1 In Complex With Krit1		3e-21
3gj0_A	221	Crystal Structure Of Human Rangdp Length = 221		6e-21
1rrp_A	204	Structure Of The Ran-Gppnhp-Ranbd1 Complex Length =		8e-21
1s8f_A	177	Crystal Structure Of Rab9 Complexed To Gdp Reveals		9e-21
3nc1_C	182	Crystal Structure Of The Crm1-Rangtp Complex Length		9e-21
1wms_A	177	High Resolution Crystal Structure Of Human Rab9 Gtp		1e-20
3ran_A	216	Canine Gdp-Ran Q69l Mutant Length = 216		1e-20
3brw_D	167	Structure Of The Rap-Rapgap Complex Length = 167		1e-20
1yzl_A	179	Gppnhp-Bound Rab9 Gtpase Length = 179		2e-20
1gua_A	167	Human Rap1a, Residues 1-167, Double Mutant (E30d,K3		3e-20
2p5s_A	199	Rab Domain Of Human Rasef In Complex With Gdp Lengt		3e-20
2bov_A	206	Molecular Recognition Of An Adp-Ribosylating Clostr		3e-20
3nby_C	176	Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclea		5e-20
2a78_A	187	Crystal Structure Of The C3bot-Rala Complex Reveals		5e-20
1uad_A	175	Crystal Structure Of The Rala-gppnhp-sec5 Ral-bindi		5e-20
3gj4_A	221	Crystal Structure Of Human Rangdp-Nup153znf3 Comple		6e-20
1u8y_A	168	Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal		1e-19
1c1y_A	167	Crystal Structure Of Rap.Gmppnp In Complex With The		1e-19
2f7s_A	217	The Crystal Structure Of Human Rab27b Bound To Gdp		2e-19
3m1i_A	219	Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex		4e-19
2x19_A	172	Crystal Structure Of Importin13 - Rangtp Complex Le		4e-19
3icq_B	171	Karyopherin Nuclear State Length = 171		4e-19
1zc3_A	175	Crystal Structure Of The Ral-Binding Domain Of Exo8		5e-19
3bc1_A	195	Crystal Structure Of The Complex Rab27a-slp2a Lengt		6e-19
2if0_A	200	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		2e-18
2iez_A	220	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		2e-18
4dso_A	189	Small-Molecule Ligands Bind To A Distinct Pocket In		3e-18
2hxs_A	178	Crystal Structure Of Rab28a Gtpase In The Inactive		3e-18
2iey_A	195	Crystal Structure Of Mouse Rab27b Bound To Gdp In H		3e-18
2kwi_A	178	Ralb-Rlip76 (Ralbp1) Complex Length = 178		3e-18
2zet_A	203	Crystal Structure Of The Small Gtpase Rab27b Comple		3e-18
2ke5_A	174	Solution Structure And Dynamics Of The Small Gtpase		4e-18
421p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		6e-18
1clu_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		6e-18
4epr_A	170	Discovery Of Small Molecules That Bind To K-Ras And		7e-18
1jah_A	166	H-Ras P21 Protein Mutant G12p, Complexed With Guano		8e-18
1agp_A	166	Three-Dimensional Structures And Properties Of A Tr		9e-18
1cxz_A	182	Crystal Structure Of Human Rhoa Complexed With The		1e-17
4djt_A	218	Crystal Structure Of A Nuclear Gtp-Binding Protein		1e-17
2gcn_A	201	Crystal Structure Of The Human Rhoc-Gdp Complex Len		3e-17
2gco_A	201	Crystal Structure Of The Human Rhoc-gppnhp Complex		3e-17
3tvd_A	193	Crystal Structure Of Mouse Rhoa-Gtp Complex Length		3e-17
1s1c_A	183	Crystal Structure Of The Complex Between The Human		3e-17
4f38_A	195	Crystal Structure Of Geranylgeranylated Rhoa In Com		3e-17
3lw8_A	185	Shigella Ipgb2 In Complex With Human Rhoa, Gdp And		3e-17
2atv_A	196	The Crystal Structure Of Human Rerg In The Gdp Boun		3e-17
3kz1_E	182	Crystal Structure Of The Complex Of Pdz-Rhogef DhPH		3e-17
1x86_B	196	Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-A		3e-17
1lb1_B	192	Crystal Structure Of The Dbl And Pleckstrin Homolog		4e-17
2erx_A	172	Crystal Structure Of Diras2 In Complex With Gdp And		6e-17
2fv8_A	207	The Crystal Structure Of Rhob In The Gdp-Bound Stat		2e-16
1z2c_A	193	Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With		3e-16
1tx4_B	177	RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177		4e-16
1ow3_B	193	Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With		4e-16
1cc0_A	190	Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Le		4e-16
1xcg_B	178	Crystal Structure Of Human Rhoa In Complex With DhP		4e-16
3msx_A	180	Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With		4e-16
3a58_B	188	Crystal Structure Of Sec3p - Rho1p Complex From Sac		5e-16
2j0v_A	212	The Crystal Structure Of Arabidopsis Thaliana Rac7-		6e-16
1dpf_A	180	Crystal Structure Of A Mg-Free Form Of Rhoa Complex		6e-16
3bwd_D	182	Crystal Structure Of The Plant Rho Protein Rop5 Len		8e-16
3sea_A	167	Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bo		1e-15
3t5g_A	181	Structure Of Fully Modified Farnesylated Rheb In Co		1e-15
2l0x_A	169	Solution Structure Of The 21 Kda Gtpase Rheb Bound		1e-15
1xtq_A	177	Structure Of Small Gtpase Human Rheb In Complex Wit		1e-15
2wbl_C	180	Three-Dimensional Structure Of A Binary Rop-Prone C		1e-15
3oes_A	201	Crystal Structure Of The Small Gtpase Rhebl1 Length		2e-15
2nty_C	180	Rop4-Gdp-Prone8 Length = 180		3e-15
1kmq_A	184	Crystal Structure Of A Constitutively Activated Rho		3e-15
2j1l_A	214	Crystal Structure Of Human Rho-Related Gtp-Binding		4e-15
2ery_A	172	The Crystal Structure Of The Ras Related Protein Rr		5e-15
2q3h_A	201	The Crystal Structure Of Rhoua In The Gdp-bound Sta		7e-15
3i3s_R	166	Crystal Structure Of H-Ras With Thr50 Replaced By I		1e-14
4q21_A	189	Molecular Switch For Signal Transduction: Structura		2e-14
4epx_A	170	Discovery Of Small Molecules That Bind To K-Ras And		2e-14
4ept_A	170	Discovery Of Small Molecules That Bind To K-Ras And		2e-14
2c5l_A	173	Structure Of Plc Epsilon Ras Association Domain Wit		3e-14
221p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		3e-14
4efm_A	171	Crystal Structure Of H-Ras G12v In Complex With Gpp		3e-14
4efl_A	171	Crystal Structure Of H-Ras Wt In Complex With Gppnh		3e-14
1lfd_B	167	Crystal Structure Of The Active Ras Protein Complex		3e-14
1wq1_R	166	Ras-Rasgap Complex Length = 166		3e-14
1rvd_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		3e-14
6q21_A	171	Molecular Switch For Signal Transduction: Structura		4e-14
2q21_A	171	Crystal Structures At 2.2 Angstroms Resolution Of T		4e-14
2x1v_A	166	Crystal Structure Of The Activating H-Ras I163f Mut		4e-14
3gft_A	187	Human K-Ras In Complex With A Gtp Analogue Length =		5e-14
2cl0_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		5e-14
3lo5_A	166	Crystal Structure Of The Dominant Negative S17n Mut		5e-14
3v4f_A	166	H-Ras Peg 400CACL2, ORDERED OFF Length = 166		5e-14
2quz_A	166	Crystal Structure Of The Activating H-Rask117r Muta		6e-14
3k9n_A	166	Allosteric Modulation Of H-Ras Gtpase Length = 166		6e-14
2cld_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		6e-14
3kkm_A	172	Crystal Structure Of H-Ras T35s In Complex With Gpp		7e-14
1iaq_A	166	C-H-Ras P21 Protein Mutant With Thr 35 Replaced By		8e-14
1lf0_A	166	Crystal Structure Of Rasa59g In The Gtp-Bound Form		1e-13
521p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		1e-13
2rgb_A	166	Crystal Structure Of H-Rasq61k-Gppnhp Length = 166		1e-13
621p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		1e-13
3kkp_A	183	Crystal Structure Of M-Ras P40d In Complex With Gpp		1e-13
3ddc_A	166	Crystal Structure Of Nore1a In Complex With Ras Len		1e-13
2fn4_A	181	The Crystal Structure Of Human Ras-Related Protein,		1e-13
1zvq_A	166	Structure Of The Q61g Mutant Of Ras In The Gdp-Boun		2e-13
1xj0_A	166	Crystal Structure Of The Gdp-Bound Form Of The Rasg		2e-13
4efn_A	171	Crystal Structure Of H-Ras Q61l In Complex With Gpp		3e-13
1xcm_A	167	Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mu		3e-13
2rgc_A	166	Crystal Structure Of H-Rasq61v-Gppnhp Length = 166		3e-13
2gf0_A	199	The Crystal Structure Of The Human Diras1 Gtpase In		3e-13
1nvv_Q	166	Structural Evidence For Feedback Activation By Rasg		3e-13
721p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		3e-13
2rga_A	166	Crystal Structure Of H-Rasq61i-Gppnhp Length = 166		3e-13
1zw6_A	166	Crystal Structure Of The Gtp-Bound Form Of Rasq61g		3e-13
1m7b_A	184	Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATI		4e-13
3kko_A	183	Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX		4e-13
3con_A	190	Crystal Structure Of The Human Nras Gtpase Bound Wi		5e-13
3pir_A	183	Crystal Structure Of M-Rasd41e In Complex With Gppn		9e-13
1x1r_A	178	Crystal Structure Of M-Ras In Complex With Gdp Leng		9e-13
1gwn_A	205	The Crystal Structure Of The Core Domain Of RhoeRND		1e-12
2v55_B	200	Mechanism Of Multi-site Phosphorylation From A Rock		1e-12
3rap_R	167	The Small G Protein Rap2 In A Non Catalytic Complex		1e-12
2nzj_A	175	The Crystal Structure Of Rem1 In Complex With Gdp L		2e-12
4dvg_A	188	Crystal Structure Of E. Histolytica Formin1 Bound T		3e-12
3ref_B	194	Crystal Structure Of Ehrho1 Bound To Gdp And Magnes		3e-12
1hh4_A	192	Rac1-Rhogdi Complex Involved In Nadph Oxidase Activ		4e-12
2h7v_A	188	Co-crystal Structure Of Ypka-rac1 Length = 188		4e-12
1g4u_R	184	Crystal Structure Of The Salmonella Tyrosine Phosph		4e-12
1mh1_A	186	Small G-Protein Length = 186		4e-12
2yc2_C	208	Intraflagellar Transport Complex 25-27 From Chlamyd		4e-12
1i4d_D	192	Crystal Structure Analysis Of Rac1-Gdp Complexed Wi		6e-12
2vrw_A	184	Critical Structural Role For The Ph And C1 Domains		6e-12
2fju_A	178	Activated Rac1 Bound To Its Effector Phospholipase		7e-12
1he1_C	176	Crystal Structure Of The Complex Between The Gap Do		7e-12
1foe_B	177	Crystal Structure Of Rac1 In Complex With The Guani		7e-12
2yin_C	196	Structure Of The Complex Between Dock2 And Rac1. Le		8e-12
3sua_A	184	Crystal Structure Of The Intracellular Domain Of Pl		8e-12
3th5_A	204	Crystal Structure Of Wild-Type Rac1 Length = 204		9e-12
3sbd_A	187	Crystal Structure Of Rac1 P29s Mutant Length = 187		9e-12
2w2t_A	185	Rac2 (G12v) In Complex With Gdp Length = 185		2e-11
2c2h_A	192	Crystal Structure Of The Human Rac3 In Complex With		2e-11
2w2v_A	184	Rac2 (G12v) In Complex With Gtpgs Length = 184		2e-11
2g0n_A	179	The Crystal Structure Of The Human Rac3 In Complex		2e-11
2ic5_A	180	Crystal Structure Of Human Rac3 Grown In The Presen		2e-11
3b13_B	184	Crystal Structure Of The Dhr-2 Domain Of Dock2 In C		3e-11
4gzm_A	204	Crystal Structure Of Rac1 F28l Mutant Length = 204		4e-11
1e96_A	192	Structure Of The RacP67PHOX COMPLEX Length = 192		4e-11
1ds6_A	192	Crystal Structure Of A Rac-Rhogdi Complex Length =		4e-11
1i4t_D	192	Crystal Structure Analysis Of Rac1-Gmppnp In Comple		4e-11
3ryt_C	180	The Plexin A1 Intracellular Region In Complex With		5e-11
4gzl_A	204	Crystal Structure Of Rac1 Q61l Mutant Length = 204		7e-11
1a4r_B	191	G12v Mutant Of Human Placental Cdc42 Gtpase In The		2e-10
2wkp_A	332	Structure Of A Photoactivatable Rac1 Containing Lov		3e-10
2wkr_A	332	Structure Of A Photoactivatable Rac1 Containing The		3e-10
2wkq_A	332	Structure Of A Photoactivatable Rac1 Containing The		3e-10
3eg5_A	178	Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex W		5e-10
1am4_D	177	Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. S		5e-10
1grn_A	191	Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.		6e-10
2qrz_A	189	Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is		6e-10
2wm9_B	190	Structure Of The Complex Between Dock9 And Cdc42. L		6e-10
2odb_A	192	The Crystal Structure Of Human Cdc42 In Complex Wit		6e-10
2dfk_B	194	Crystal Structure Of The Cdc42-Collybistin Ii Compl		6e-10
1ees_A	178	Solution Structure Of Cdc42hs Complexed With A Pept		6e-10
1cee_A	179	Solution Structure Of Cdc42 In Complex With The Gtp		6e-10
4did_A	193	Crystal Structure Of Salmonella Effector N-Terminal		7e-10
3gcg_A	182	Crystal Structure Of Map And Cdc42 Complex Length =		7e-10
1gzs_A	180	Crystal Structure Of The Complex Between The Gef Do		7e-10
1aje_A	194	Cdc42 From Human, Nmr, 20 Structures Length = 194		8e-10
1doa_A	191	Structure Of The Rho Family Gtp-Binding Protein Cdc		8e-10
1kz7_B	188	Crystal Structure Of The DhPH FRAGMENT OF MURINE DB		8e-10
2rex_B	197	Crystal Structure Of The Effector Domain Of Plxnb1		8e-10
2cls_A	198	The Crystal Structure Of The Human Rnd1 Gtpase In T		8e-10
2ht6_A	174	Crystal Structure Of Human Gem G-Domain Bound To Gd		9e-10
2g3y_A	211	Crystal Structure Of The Human Small Gtpase Gem Len		9e-10
2atx_A	194	Crystal Structure Of The Tc10 Gppnhp Complex Length		9e-10
3q3j_B	214	Crystal Structure Of Plexin A2 Rbd In Complex With		9e-10
2cjw_B	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		1e-09
1ryf_A	203	Alternative Splicing Of Rac1 Generates Rac1b, A Sel		1e-09
2cjw_A	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		1e-09
1an0_A	190	Cdc42hs-Gdp Complex Length = 190		1e-09
3qbv_A	178	Structure Of Designed Orthogonal Interaction Betwee		2e-09
2kb0_A	178	Cdc42(T35a) Length = 178		2e-09
2ase_A	178	Nmr Structure Of The F28l Mutant Of Cdc42hs Length		3e-09
3vhl_B	195	Crystal Structure Of The Dhr-2 Domain Of Dock8 In C		3e-09
1nf3_A	195	Structure Of Cdc42 In A Complex With The Gtpase-Bin		5e-09
1cf4_A	184	Cdc42ACK GTPASE-Binding Domain Complex Length = 184		6e-09
3q72_A	166	Crystal Structure Of Rad G-Domain-Gtp Analog Comple		2e-08
2dpx_A	174	Crystal Structure Of Human Rad Gtpase Length = 174		2e-08
2gjs_A	176	The Crystal Structure Of Human Rrad In Complex With		2e-08
3cbq_A	195	Crystal Structure Of The Human Rem2 Gtpase With Bou		5e-08
4aii_A	180	Crystal Structure Of The Rat Rem2 Gtpase - G Domain		5e-08
3q85_A	169	Crystal Structure Of Rem2 G-Domain -Gtp Analog Comp		1e-07
3lvr_E	497	The Crystal Structure Of Asap3 In Complex With Arf6		3e-07
1zd9_A	188	Structure Of Human Adp-Ribosylation Factor-Like 10b		3e-07
2al7_A	186	Structure Of Human Adp-Ribosylation Factor-Like 10c		4e-07
1e0s_A	174	Small G Protein Arf6-Gdp Length = 174		5e-07
2h18_A	193	Structure Of Human Adp-Ribosylation Factor-Like 10b		5e-07
2a5d_A	175	Structural Basis For The Activation Of Cholera Toxi		5e-07
4fme_C	160	Espg-Rab1-Arf6 Complex Length = 160		1e-06
3n5c_A	162	Crystal Structure Of Arf6delta13 Complexed With Gdp		1e-06
3pcr_B	162	Structure Of Espg-Arf6 Complex Length = 162		3e-06
2a5g_A	175	Cholera Toxin A1 Subunit Bound To Arf6(Q67l) Length		3e-06
2w83_A	165	Crystal Structure Of The Arf6 Gtpase In Complex Wit		5e-06
3vhx_A	172	The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesi		5e-06
1mr3_F	181	Saccharomyces Cerevisiae Adp-Ribosylation Factor 2		2e-05
2zej_A	184	Structure Of The Roc Domain From The Parkinson's Di		3e-05
3d6t_B	171	Structure Of The Roc Domain From The Parkinson's Di		3e-05
2k5u_A	181	Solution Structure Of Myirstoylated Yeast Arf1 Prot		4e-05
2ksq_A	181	The Myristoylated Yeast Arf1 In A Gtp And Bicelle B		7e-05
3tjz_A	164	Crystal Structure Of Arf1 Bound To The GammaZETA-Co		1e-04
3rd1_A	178	Structure Of An Adp Ribosylation Factor From Entamo		4e-04
3c5c_A	187	Crystal Structure Of Human Ras-Like, Family 12 Prot		8e-04

>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A Length = 181

Iteration: 1
 Score =  245 bits (625), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 113/168 (67%), Positives = 134/168 (79%)
Query: 1   MARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIK 60
           MA   NK+I  KLVLLGD+G GK+SLVLRFVK QF +FQESTIGAAFF+Q L++N+ T+K
Sbjct: 3   MAAAGNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVK 62
Query: 61  FDIWDTAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFL 120
           F+IWDTAGQERYHSLAPMYYRG       +D+T+  SFERAKKWVQELQ QGNPN++M L
Sbjct: 63  FEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMAL 122
Query: 121 VANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIG 168
             NK DL + RKV  E+ + YAQENGL F+ETSAK+A NV E+FYEI 
Sbjct: 123 AGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIA 170

>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c (Mouse) Length = 164

Iteration: 1
 Score =  217 bits (553), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 99/159 (62%), Positives = 122/159 (76%)
Query: 10  QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ 69
           Q KLVLLG+   GK+SLVLRFVKGQF ++QESTIGAAF TQ + L++ T+KF+IWDTAGQ
Sbjct: 3   QFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQ 62
Query: 70  ERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEE 129
           ERYHSLAPMYYRG       YDIT+ D+F RAK WV+ELQRQ +PN+++ L  NK DL  
Sbjct: 63  ERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLAS 122
Query: 130 KRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIG 168
           KR V+ +E + YA +N L F+ETSAK+A NVNE+F  I 
Sbjct: 123 KRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIA 161

>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5 C-Terminal Domain Length = 171

Iteration: 1
 Score =  215 bits (548), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 101/163 (61%), Positives = 123/163 (75%)
Query: 6   NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWD 65
           NK  Q KLVLLG+   GK+SLVLRFVKGQF +FQESTIGAAF TQ + L++ T+KF+IWD
Sbjct: 3   NKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWD 62
Query: 66  TAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKV 125
           TAGQERYHSLAPMYYRG       YDIT+ +SF RAK WV+ELQRQ +PN+++ L  NK 
Sbjct: 63  TAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKA 122
Query: 126 DLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIG 168
           DL  KR V  +E + YA +N L F+ETSAK++ NVNE+F  I 
Sbjct: 123 DLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIA 165

>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a Length = 170

Iteration: 1
 Score =  215 bits (547), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 101/163 (61%), Positives = 123/163 (75%)
Query: 6   NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWD 65
           NK  Q KLVLLG+   GK+SLVLRFVKGQF +FQESTIGAAF TQ + L++ T+KF+IWD
Sbjct: 2   NKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWD 61
Query: 66  TAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKV 125
           TAGQERYHSLAPMYYRG       YDIT+ +SF RAK WV+ELQRQ +PN+++ L  NK 
Sbjct: 62  TAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKA 121
Query: 126 DLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIG 168
           DL  KR V  +E + YA +N L F+ETSAK++ NVNE+F  I 
Sbjct: 122 DLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIA 164

>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp Length = 179

Iteration: 1
 Score =  214 bits (545), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 99/165 (60%), Positives = 126/165 (76%)
Query: 4   TSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDI 63
           +++K  Q KLVLLG+   GK+SLVLRFVKGQF ++QESTIGAAF TQ + L++ T+KF+I
Sbjct: 2   SASKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEI 61
Query: 64  WDTAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVAN 123
           WDTAGQERYHSLAPMYYRG       YDIT+ ++F RAK WV+ELQRQ +P++++ L  N
Sbjct: 62  WDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGN 121
Query: 124 KVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIG 168
           K DL  KR V+ EE + YA +N L F+ETSAK+A NVN+LF  I 
Sbjct: 122 KADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIA 166

>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With Gdp Length = 170

Iteration: 1
 Score =  214 bits (545), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 101/163 (61%), Positives = 123/163 (75%)
Query: 6   NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWD 65
           NK  Q KLVLLG+   GK+SLVLRFVKGQF +FQESTIGAAF TQ + L++ T+KF+IWD
Sbjct: 2   NKICQFKLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWD 61
Query: 66  TAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKV 125
           TAGQERYHSLAPMYYRG       YDIT+ +SF RAK WV+ELQRQ +PN+++ L  NK 
Sbjct: 62  TAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKA 121
Query: 126 DLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIG 168
           DL  KR V  +E + YA +N L F+ETSAK++ NVNE+F  I 
Sbjct: 122 DLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIA 164

>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166

Iteration: 1
 Score =  214 bits (545), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 98/159 (61%), Positives = 121/159 (76%)
Query: 10  QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ 69
           Q KLVLLG+   GK+SLVLRFVKGQF ++QESTI AAF TQ + L++ T+KF+IWDTAGQ
Sbjct: 5   QFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDTAGQ 64
Query: 70  ERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEE 129
           ERYHSLAPMYYRG       YDIT+ D+F RAK WV+ELQRQ +PN+++ L  NK DL  
Sbjct: 65  ERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLAS 124
Query: 130 KRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIG 168
           KR V+ +E + YA +N L F+ETSAK+A NVNE+F  I 
Sbjct: 125 KRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIA 163

>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase Length = 167

Iteration: 1
 Score =  214 bits (545), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 98/159 (61%), Positives = 121/159 (76%)
Query: 10  QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ 69
           Q KLVLLG+   GK+SLVLRFVKGQF ++QESTIGAAF TQ + L++ T+KF+IWDTAG 
Sbjct: 5   QFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGL 64
Query: 70  ERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEE 129
           ERYHSLAPMYYRG       YDIT+ D+F RAK WV+ELQRQ +PN+++ L  NK DL  
Sbjct: 65  ERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLAS 124
Query: 130 KRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIG 168
           KR V+ +E + YA +N L F+ETSAK+A NVNE+F  I 
Sbjct: 125 KRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIA 163

>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  214 bits (544), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 101/163 (61%), Positives = 123/163 (75%)
Query: 6   NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWD 65
           NK  Q KLVLLG+   GK+SLVLRFVKGQF +FQESTIGAAF TQ + L++ T+KF+IWD
Sbjct: 2   NKICQFKLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWD 61
Query: 66  TAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKV 125
           TAGQERYHSLAPMYYRG       YDIT+ +SF RAK WV+ELQRQ +PN+++ L  NK 
Sbjct: 62  TAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKA 121
Query: 126 DLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIG 168
           DL  KR V  +E + YA +N L F+ETSAK++ NVNE+F  I 
Sbjct: 122 DLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIA 164

>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  214 bits (544), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 101/163 (61%), Positives = 123/163 (75%)
Query: 6   NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWD 65
           NK  Q KLVLLG+   GK+SLVLRFVKGQF +FQESTIGAAF TQ + L++ T+KF+IWD
Sbjct: 2   NKICQFKLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWD 61
Query: 66  TAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKV 125
           TAGQERYHSLAPMYYRG       YDIT+ +SF RAK WV+ELQRQ +PN+++ L  NK 
Sbjct: 62  TAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKA 121
Query: 126 DLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIG 168
           DL  KR V  +E + YA +N L F+ETSAK++ NVNE+F  I 
Sbjct: 122 DLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIA 164

>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  213 bits (543), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 101/163 (61%), Positives = 123/163 (75%)
Query: 6   NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWD 65
           NK  Q KLVLLG+   GK+SLVLRFVKGQF +FQESTIGAAF TQ + L++ T+KF+IWD
Sbjct: 2   NKICQFKLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWD 61
Query: 66  TAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKV 125
           TAGQERYHSLAPMYYRG       YDIT+ +SF RAK WV+ELQRQ +PN+++ L  NK 
Sbjct: 62  TAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKA 121
Query: 126 DLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIG 168
           DL  KR V  +E + YA +N L F+ETSAK++ NVNE+F  I 
Sbjct: 122 DLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIA 164

>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  213 bits (542), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 101/163 (61%), Positives = 123/163 (75%)
Query: 6   NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWD 65
           NK  Q KLVLLG+   GK+SLVLRFVKGQF +FQESTIGAAF TQ + L++ T+KF+IWD
Sbjct: 2   NKICQFKLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWD 61
Query: 66  TAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKV 125
           TAGQERYHSLAPMYYRG       YDIT+ +SF RAK WV+ELQRQ +PN+++ L  NK 
Sbjct: 62  TAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKA 121
Query: 126 DLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIG 168
           DL  KR V  +E + YA +N L F+ETSAK++ NVNE+F  I 
Sbjct: 122 DLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIA 164

>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2 Zinc Finger Of Eea1 Length = 168

Iteration: 1
 Score =  213 bits (541), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 100/163 (61%), Positives = 122/163 (74%)
Query: 6   NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWD 65
           NK  Q KLVLLG+   GK+SLVLRFVKGQF +FQESTIGAAF TQ + L++ T+KF+IWD
Sbjct: 1   NKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWD 60
Query: 66  TAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKV 125
           TAG ERYHSLAPMYYRG       YDIT+ +SF RAK WV+ELQRQ +PN+++ L  NK 
Sbjct: 61  TAGLERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKA 120
Query: 126 DLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIG 168
           DL  KR V  +E + YA +N L F+ETSAK++ NVNE+F  I 
Sbjct: 121 DLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIA 163

>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex Length = 171

Iteration: 1
 Score =  211 bits (537), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 100/163 (61%), Positives = 121/163 (74%)
Query: 6   NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWD 65
           NK  Q KLVLLG+   GK+SLVLRFVKGQF +FQESTIGAAF TQ + L++ T+KF+IWD
Sbjct: 3   NKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWD 62
Query: 66  TAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKV 125
           TAGQERYHSLAP YYRG       YDIT+ +SF RAK WV+ELQRQ +PN+++ L  NK 
Sbjct: 63  TAGQERYHSLAPXYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKA 122
Query: 126 DLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIG 168
           DL  KR V  +E + YA +N L F ETSAK++ NVNE+F  I 
Sbjct: 123 DLANKRAVDFQEAQSYADDNSLLFXETSAKTSXNVNEIFXAIA 165

>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 170

Iteration: 1
 Score =  175 bits (443), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 87/162 (53%), Positives = 115/162 (70%), Gaps = 3/162 (1%)
Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +KLVLLG+   GK+S+VLRFV   F + +E TIGAAF TQ +++NE T+KF+IWDTAGQE
Sbjct: 4   IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQE 63
Query: 71  RYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVD-LEE 129
           R+ SLAP YYR        YD+T   SF +A+ WV+EL  Q + ++I+ LV NK+D L+E
Sbjct: 64  RFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQE 123
Query: 130 --KRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIGD 169
             +RKV  EEGE  A+E GL F ETSAK+  NVN++F  IG+
Sbjct: 124 GGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGE 165

>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp Analogue Length = 192

Iteration: 1
 Score =  156 bits (394), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 77/158 (48%), Positives = 101/158 (63%)
Query: 10  QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ 69
           ++K+ LLGD G GK+S+V RFV+  F      TIGA+F T+ +       KF IWDTAGQ
Sbjct: 23  ELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQ 82
Query: 70  ERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEE 129
           ER+HSLAPMYYRG       YDIT  DSF   KKWV+EL+  G  N++M +  NK DL +
Sbjct: 83  ERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSD 142
Query: 130 KRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
            R+V  ++ + YA+  G   +ETSAK+A N+ ELF  I
Sbjct: 143 IREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGI 180

>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase Length = 169

Iteration: 1
 Score =  149 bits (376), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 73/158 (46%), Positives = 101/158 (63%)
Query: 10  QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ 69
           ++K+ LLGD G GK+S+V RFV+  F      TIGA+F T+ +       KF IWDTAGQ
Sbjct: 5   ELKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQ 64
Query: 70  ERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEE 129
           ER+ +LAPMYYRG       YDIT  ++F   K WV+EL++ G P++++ +  NK DL +
Sbjct: 65  ERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTD 124
Query: 130 KRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
            R+V   + + YA      F+ETSAK+A N+NELF EI
Sbjct: 125 VREVMERDAKDYADSIHAIFVETSAKNAININELFIEI 162

>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase Rab1a Length = 175

Iteration: 1
 Score =  145 bits (366), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 70/157 (44%), Positives = 97/157 (61%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           KL+L+GD G GK+ L+LRF    + D   STIG  F  + +SL   T+K  IWDTAGQER
Sbjct: 11  KLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQIWDTAGQER 70
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           + ++   YYRG       YD+T  DSF+  K+W+QE+ R    N+   LV NK DL  KR
Sbjct: 71  FRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQEIDRYAMENVNKLLVGNKCDLVSKR 130
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIG 168
            V ++EG   A  +G+ F+ETSAK+A+NV + F+ + 
Sbjct: 131 VVTSDEGRELADSHGIKFIETSAKNAYNVEQAFHTMA 167

>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With The Minimal Rab Binding Domain Of Rabenosyn-5 Length = 170

Iteration: 1
 Score =  145 bits (365), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 71/158 (44%), Positives = 100/158 (63%)
Query: 10  QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ 69
           ++K+ LLGD G GK+S++ RFV+  F      TIGA+F T+ +       KF IWDTAG 
Sbjct: 6   ELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGL 65
Query: 70  ERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEE 129
           ER+ +LAPMYYRG       YDIT  ++F   K WV+EL++ G P++++ +  NK DL +
Sbjct: 66  ERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTD 125
Query: 130 KRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
            R+V   + + YA      F+ETSAK+A N+NELF EI
Sbjct: 126 VREVMERDAKDYADSIHAIFVETSAKNAININELFIEI 163

>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase Length = 174

Iteration: 1
 Score =  144 bits (364), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 66/153 (43%), Positives = 99/153 (64%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K +++GD G GK+ L+L+F   +F    + TIG  F  ++++++   IK  IWDTAGQE 
Sbjct: 12  KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQES 71
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           + S+   YYRG       YDIT  D+F     W+++ ++  N N+++ L+ NK DLE +R
Sbjct: 72  FRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRR 131
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELF 164
           +VK EEGE +A+E+GL F+ETSAK+A NV E F
Sbjct: 132 EVKKEEGEAFAREHGLIFMETSAKTASNVEEAF 164

>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170

Iteration: 1
 Score =  142 bits (358), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 68/156 (43%), Positives = 99/156 (63%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K+VLLG+   GKTSLVLR+ + +F D   +T+GA+F T+ L++    +   IWDTAGQER
Sbjct: 8   KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQER 67
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           +H+L P+YYR        YDIT  DSF++ K WV+EL++     + + +V NK+DLE++R
Sbjct: 68  FHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKER 127
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
            V  +E E YA+  G     TSAK    + ELF ++
Sbjct: 128 HVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDL 163

>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase Length = 170

Iteration: 1
 Score =  142 bits (358), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 67/157 (42%), Positives = 102/157 (64%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           KLV LG+   GKTSL+ RF+   F +  ++TIG  F ++ + L + TI+  +WDTAGQER
Sbjct: 8   KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQER 67
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           + SL P Y R        YDIT+++SF++  KW+ +++ +   ++I+ LV NK DL +KR
Sbjct: 68  FRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKR 127
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIG 168
           +V  EEGE  A+E  + F+ETSAK+ +NV +LF  + 
Sbjct: 128 QVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 164

>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its Inactive Gdp-Bound Form Length = 171

Iteration: 1
 Score =  142 bits (358), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 65/159 (40%), Positives = 102/159 (64%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           KLV LG+   GKTSL+ RF+   F +  ++TIG  F ++ + L + T++  +WDTAGQER
Sbjct: 4   KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 63
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           + SL P Y R        YDIT+++SF++  KW+ +++ +   ++I+ LV NK DL +KR
Sbjct: 64  FRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKTDLADKR 123
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIGDC 170
           ++  EEGE  A+E  + F+ETSAK+ +NV +LF  +   
Sbjct: 124 QITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVASA 162

>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp Bound Form At 1.8 Resolution Length = 162

Iteration: 1
 Score =  142 bits (357), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 66/157 (42%), Positives = 102/157 (64%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           KLV LG+   GKTSL+ RF+   F +  ++TIG  F ++ + L + T++  +WDTAGQER
Sbjct: 3   KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 62
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           + SL P Y R        YDIT+++SF++  KW+ +++ +   ++I+ LV NK DL +KR
Sbjct: 63  FRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKR 122
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIG 168
           +V  EEGE  A+E  + F+ETSAK+ +NV +LF  + 
Sbjct: 123 QVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 159

>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To Gmppnp Length = 179

Iteration: 1
 Score =  141 bits (356), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 66/157 (42%), Positives = 100/157 (63%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           KLV LG+   GKTSL+ RF+   F +  ++TIG  F ++ + L + T++  +WDTAGQER
Sbjct: 16  KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 75
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           + SL P Y R        YDIT+ +SF +  KW+ +++ +   ++I+ LV NK DL +KR
Sbjct: 76  FRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKR 135
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIG 168
           +V  EEGE  A+E  + F+ETSAK+ +NV +LF  + 
Sbjct: 136 QVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 172

>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l) Length = 216

Iteration: 1
 Score =  139 bits (350), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 66/157 (42%), Positives = 101/157 (64%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           KLV LG+   GKTSL+ RF+   F +  ++TIG  F ++ + L + TI+  +WDTAG ER
Sbjct: 15  KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLER 74
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           + SL P Y R        YDIT+++SF++  KW+ +++ +   ++I+ LV NK DL +KR
Sbjct: 75  FRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKR 134
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIG 168
           +V  EEGE  A+E  + F+ETSAK+ +NV +LF  + 
Sbjct: 135 QVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 171

>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Length = 170

Iteration: 1
 Score =  139 bits (350), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 67/156 (42%), Positives = 98/156 (62%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K+VLLG+   GKTSLVLR+ + +F D   +T+ A+F T+ L++    +   IWDTAGQER
Sbjct: 8   KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQER 67
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           +H+L P+YYR        YDIT  DSF++ K WV+EL++     + + +V NK+DLE++R
Sbjct: 68  FHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKER 127
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
            V  +E E YA+  G     TSAK    + ELF ++
Sbjct: 128 HVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDL 163

>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b Length = 191

Iteration: 1
 Score =  139 bits (350), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 64/153 (41%), Positives = 98/153 (64%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K +++GD G GK+ L+L+F   +F    + TIG  F  ++++++   IK  IWDTAGQE 
Sbjct: 23  KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQES 82
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           + S+   YYRG       YDIT  ++F     W+++ ++  + N+++ L+ NK DLE +R
Sbjct: 83  FRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRR 142
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELF 164
            VK EEGE +A+E+GL F+ETSAK+A NV E F
Sbjct: 143 DVKREEGEAFAREHGLIFMETSAKTACNVEEAF 175

>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188

Iteration: 1
 Score =  139 bits (349), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 65/157 (41%), Positives = 101/157 (64%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           KLV LG+   GKTSL+ RF+   F +  ++TIG  F ++ + L + T++  +WDTAG ER
Sbjct: 8   KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLER 67
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           + SL P Y R        YDIT+++SF++  KW+ +++ +   ++I+ LV NK DL +KR
Sbjct: 68  FRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKR 127
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIG 168
           +V  EEGE  A+E  + F+ETSAK+ +NV +LF  + 
Sbjct: 128 QVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 164

>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Length = 184

Iteration: 1
 Score =  139 bits (349), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 67/156 (42%), Positives = 98/156 (62%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K+VLLG+   GKTSLVLR+ + +F D   +T+ A+F T+ L++    +   IWDTAGQER
Sbjct: 22  KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQER 81
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           +H+L P+YYR        YDIT  DSF++ K WV+EL++     + + +V NK+DLE++R
Sbjct: 82  FHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKER 141
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
            V  +E E YA+  G     TSAK    + ELF ++
Sbjct: 142 HVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDL 177

>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex Length = 211

Iteration: 1
 Score =  138 bits (347), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 65/157 (41%), Positives = 101/157 (64%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           KLV LG+   GKTSL+ RF+   F +  ++TIG  F ++ + L + T++  +WDTAG ER
Sbjct: 18  KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLER 77
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           + SL P Y R        YDIT+++SF++  KW+ +++ +   ++I+ LV NK DL +KR
Sbjct: 78  FRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKR 137
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIG 168
           +V  EEGE  A+E  + F+ETSAK+ +NV +LF  + 
Sbjct: 138 QVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 174

>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase Length = 184

Iteration: 1
 Score =  137 bits (346), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 68/165 (41%), Positives = 101/165 (61%), Gaps = 2/165 (1%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K+VL+GD G GK++L+ RF + +F    +STIG  F T+ + ++  TIK  IWDTAGQER
Sbjct: 22  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQER 81
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           Y ++   YYRG       YDI    ++E  ++W++EL+   + N+++ LV NK DL   R
Sbjct: 82  YRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLR 141
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIGDCTECFSL 176
            V  +E   +A++NGLSF+ETSA  + NV   F  I   TE + +
Sbjct: 142 AVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTI--LTEIYRI 184

>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex With Gdp Length = 191

Iteration: 1
 Score =  137 bits (345), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 68/163 (41%), Positives = 100/163 (61%), Gaps = 2/163 (1%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K+VL+GD G GK++L+ RF + +F    +STIG  F T+ + ++  TIK  IWDTAGQER
Sbjct: 31  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQER 90
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           Y ++   YYRG       YDI    ++E  ++W++EL+   + N+++ LV NK DL   R
Sbjct: 91  YRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLR 150
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIGDCTECF 174
            V  +E   +A++NGLSF+ETSA  + NV   F  I   TE +
Sbjct: 151 AVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTI--LTEIY 191

>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase Length = 199

Iteration: 1
 Score =  137 bits (344), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 68/165 (41%), Positives = 100/165 (60%), Gaps = 2/165 (1%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K+VL+GD G GK++L+ RF + +F    +STIG  F T+ + ++  TIK  IWDTAGQER
Sbjct: 7   KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQER 66
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           Y  +   YYRG       YDI    ++E  ++W++EL+   + N+++ LV NK DL   R
Sbjct: 67  YRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLR 126
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIGDCTECFSL 176
            V  +E   +A++N LSF+ETSA  + NV E F  I   TE + +
Sbjct: 127 AVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNI--LTEIYRI 169

>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed With Gdp Length = 162

Iteration: 1
 Score =  135 bits (341), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 69/153 (45%), Positives = 92/153 (60%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           KLV LG+   GKTS++ RF    F +  +STIG  F ++ L L+E  ++  +WDTAGQER
Sbjct: 3   KLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQER 62
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           + SL P Y R        YDIT+  SFE   KW+Q++  +   ++I+ LV NK DL + R
Sbjct: 63  FRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGDLR 122
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELF 164
           KV  EEG   AQE    F ETSAK+ HN+  LF
Sbjct: 123 KVTYEEGXQKAQEYNTXFHETSAKAGHNIKVLF 155

>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi Length = 223

Iteration: 1
 Score =  135 bits (340), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 68/156 (43%), Positives = 94/156 (60%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K+VL+GD G GK++L+ RF K +F    +STIG  F T+ L +    IK  IWDTAGQER
Sbjct: 15  KIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQER 74
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           Y ++   YYRG       YDI+   S+E    W+ EL+   + N+ + L+ NK DL   R
Sbjct: 75  YRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLR 134
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
            V  EE + +AQEN L F ETSA ++ NV++ F E+
Sbjct: 135 AVPTEESKTFAQENQLLFTETSALNSENVDKAFEEL 170

>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3 Length = 172

Iteration: 1
 Score =  134 bits (338), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 67/165 (40%), Positives = 100/165 (60%), Gaps = 2/165 (1%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K+VL+GD G GK++L+ RF + +F    +STIG  F T+ + ++  TIK  IWDTAG ER
Sbjct: 10  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLER 69
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           Y ++   YYRG       YDI    ++E  ++W++EL+   + N+++ LV NK DL   R
Sbjct: 70  YRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLR 129
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIGDCTECFSL 176
            V  +E   +A++NGLSF+ETSA  + NV   F  I   TE + +
Sbjct: 130 AVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTI--LTEIYRI 172

>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase Length = 179

Iteration: 1
 Score =  134 bits (337), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 63/155 (40%), Positives = 93/155 (60%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K +++GDMG GK+ L+ +F + +F      TIG  F T+++ ++   IK  IWDTAGQER
Sbjct: 17  KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQER 76
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           + ++   YYRG       YDIT   ++     W+ + +   NPN ++ L+ NK DLE +R
Sbjct: 77  FRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQR 136
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYE 166
            V  EE + +A+ENGL FLE SAK+  NV + F E
Sbjct: 137 DVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLE 171

>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex With Gtpgammas Length = 191

Iteration: 1
 Score =  134 bits (337), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 67/163 (41%), Positives = 99/163 (60%), Gaps = 2/163 (1%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K+VL+GD G GK++L+ RF + +F    +STIG  F T+ + ++  TIK  IWDTAG ER
Sbjct: 31  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLER 90
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           Y ++   YYRG       YDI    ++E  ++W++EL+   + N+++ LV NK DL   R
Sbjct: 91  YRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLR 150
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIGDCTECF 174
            V  +E   +A++NGLSF+ETSA  + NV   F  I   TE +
Sbjct: 151 AVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTI--LTEIY 191

>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In Complex With Gdp Length = 181

Iteration: 1
 Score =  133 bits (335), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 67/157 (42%), Positives = 99/157 (63%), Gaps = 1/157 (0%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSL-NEVTIKFDIWDTAGQE 70
           K+VL+GD G GK++L+ RF + +F    +STIG  F T+ + L N   IK  IWDTAGQE
Sbjct: 9   KIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQIWDTAGQE 68
Query: 71  RYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEK 130
           RY ++   YYRG       YDIT  +SFE  +KW++EL+   + N+++ LV NK DL+  
Sbjct: 69  RYRAITSAYYRGAVGALLVYDITKKNSFENIEKWLKELRDNADSNIVILLVGNKSDLKHL 128
Query: 131 RKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
           R + + +   YA++  L+F+ETSA  A NV   F+++
Sbjct: 129 RVINDNDATQYAKKEKLAFIETSALEATNVELAFHQL 165

>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2 Length = 173

Iteration: 1
 Score =  133 bits (335), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 67/163 (41%), Positives = 99/163 (60%), Gaps = 2/163 (1%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K+VL+GD G GK++L+ RF + +F    +STIG  F T+ + ++  TIK  IWDTAG ER
Sbjct: 13  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLER 72
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           Y ++   YYRG       YDI    ++E  ++W++EL+   + N+++ LV NK DL   R
Sbjct: 73  YRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNKSDLRHLR 132
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIGDCTECF 174
            V  +E   +A++NGLSF+ETSA  + NV   F  I   TE +
Sbjct: 133 AVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTI--LTEIY 173

>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab- Binding Domain Length = 167

Iteration: 1
 Score =  133 bits (335), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 67/163 (41%), Positives = 99/163 (60%), Gaps = 2/163 (1%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K+VL+GD G GK++L+ RF + +F    +STIG  F T+ + ++  TIK  IWDTAG ER
Sbjct: 7   KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLER 66
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           Y ++   YYRG       YDI    ++E  ++W++EL+   + N+++ LV NK DL   R
Sbjct: 67  YRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNKSDLRHLR 126
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIGDCTECF 174
            V  +E   +A++NGLSF+ETSA  + NV   F  I   TE +
Sbjct: 127 AVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTI--LTEIY 167

>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue Length = 201

Iteration: 1
 Score =  132 bits (332), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 63/157 (40%), Positives = 96/157 (61%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K+VL+G+ G GKT LV RF +G F   Q +TIG  F  + + +N   +K  IWDTAGQER
Sbjct: 28  KIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQER 87
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           + S+   YYR        YDIT  +SF    +W++E+++  +  +I  LV NK+DL E+R
Sbjct: 88  FRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERR 147
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIG 168
           +V  +  E +++   + +LETSAK + NV +LF ++ 
Sbjct: 148 EVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLA 184

>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA Length = 175

Iteration: 1
 Score =  132 bits (331), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 66/153 (43%), Positives = 92/153 (60%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           KL+L+GD G GK+ L+LRF    + +   STIG  F  + + L+  TIK  IWDTAGQER
Sbjct: 11  KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 70
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           + ++   YYRG       YD+T  +S+   K+W+QE+ R  + N+   LV NK DL  K+
Sbjct: 71  FRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKK 130
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELF 164
            V N   + +A   G+ FLETSAK+A NV + F
Sbjct: 131 VVDNTTAKEFADSLGIPFLETSAKNATNVEQAF 163

>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain Of Lepb In Complex With Rab1b Bound To Gdp And Bef3 Length = 181

Iteration: 1
 Score =  132 bits (331), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 66/153 (43%), Positives = 92/153 (60%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           KL+L+GD G GK+ L+LRF    + +   STIG  F  + + L+  TIK  IWDTAGQER
Sbjct: 11  KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 70
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           + ++   YYRG       YD+T  +S+   K+W+QE+ R  + N+   LV NK DL  K+
Sbjct: 71  FRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKK 130
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELF 164
            V N   + +A   G+ FLETSAK+A NV + F
Sbjct: 131 VVDNTTAKEFADSLGIPFLETSAKNATNVEQAF 163

>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14 Length = 196

Iteration: 1
 Score =  131 bits (330), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 62/155 (40%), Positives = 92/155 (59%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K +++GDMG GK+ L+ +F + +F      TIG  F T+++ ++   IK  IWDTAGQ R
Sbjct: 32  KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQGR 91
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           + ++   YYRG       YDIT   ++     W+ + +   NPN ++ L+ NK DLE +R
Sbjct: 92  FRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQR 151
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYE 166
            V  EE + +A+ENGL FLE SAK+  NV + F E
Sbjct: 152 DVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLE 186

>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A Length = 164

Iteration: 1
 Score =  130 bits (328), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 66/153 (43%), Positives = 91/153 (59%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           KL+L+GD G GK+ L+LRF    + +   STIG  F  + + L+  TIK  IWDTAGQER
Sbjct: 1   KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 60
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           + ++   YYRG       YD+T  +SF   K+W+QE+ R  + N+   LV NK DL  K+
Sbjct: 61  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKK 120
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELF 164
            V     + +A   G+ FLETSAK+A NV + F
Sbjct: 121 VVDYTTAKEFADSLGIPFLETSAKNATNVEQSF 153

>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum, Pfb0500c Length = 208

Iteration: 1
 Score =  130 bits (327), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 74/195 (37%), Positives = 105/195 (53%), Gaps = 40/195 (20%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSL----------------- 54
           K VLLG+   GK+S+VLR  K  F +   +TIGA+F T V++L                 
Sbjct: 9   KTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNI 68
Query: 55  --------------------NEVTIKFDIWDTAGQERYHSLAPMYYRGXXXXXXXYDITS 94
                               N   IKFDIWDTAGQERY S+ P+YYRG       +DI++
Sbjct: 69  NSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISN 128
Query: 95  MDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSA 154
            ++ +RAK WV +L+     N I+ LVANK+D + K +V   E + YAQ+N L F++TSA
Sbjct: 129 SNTLDRAKTWVNQLKIS--SNYIIILVANKID-KNKFQVDILEVQKYAQDNNLLFIQTSA 185
Query: 155 KSAHNVNELFYEIGD 169
           K+  N+  +FY + +
Sbjct: 186 KTGTNIKNIFYMLAE 200

>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure Length = 171

Iteration: 1
 Score =  130 bits (327), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 66/153 (43%), Positives = 91/153 (59%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           KL+L+GD G GK+ L+LRF    + +   STIG  F  + + L+  TIK  IWDTAGQER
Sbjct: 8   KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 67
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           + ++   YYRG       YD+T  +SF   K+W+QE+ R  + N+   LV NK DL  K+
Sbjct: 68  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKK 127
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELF 164
            V     + +A   G+ FLETSAK+A NV + F
Sbjct: 128 VVDYTTAKEFADSLGIPFLETSAKNATNVEQSF 160

>pdb|4FMC|B Chain B, Espg-Rab1 Complex Length = 171

Iteration: 1
 Score =  130 bits (327), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 66/153 (43%), Positives = 91/153 (59%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           KL+L+GD G GK+ L+LRF    + +   STIG  F  + + L+  TIK  IWDTAGQER
Sbjct: 8   KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 67
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           + ++   YYRG       YD+T  +SF   K+W+QE+ R  + N+   LV NK DL  K+
Sbjct: 68  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKK 127
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELF 164
            V     + +A   G+ FLETSAK+A NV + F
Sbjct: 128 VVDYTTAKEFADSLGIPFLETSAKNATNVEQSF 160

>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With The Coiled- Coil Domain Of Lida From Legionella Pneumophila Length = 196

Iteration: 1
 Score =  130 bits (327), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 66/153 (43%), Positives = 91/153 (59%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           KL+L+GD G GK+ L+LRF    + +   STIG  F  + + L+  TIK  IWDTAGQER
Sbjct: 18  KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 77
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           + ++   YYRG       YD+T  +SF   K+W+QE+ R  + N+   LV NK DL  K+
Sbjct: 78  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKK 137
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELF 164
            V     + +A   G+ FLETSAK+A NV + F
Sbjct: 138 VVDYTTAKEFADSLGIPFLETSAKNATNVEQSF 170

>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp Length = 191

Iteration: 1
 Score =  130 bits (327), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 66/153 (43%), Positives = 91/153 (59%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           KL+L+GD G GK+ L+LRF    + +   STIG  F  + + L+  TIK  IWDTAGQER
Sbjct: 27  KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 86
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           + ++   YYRG       YD+T  +SF   K+W+QE+ R  + N+   LV NK DL  K+
Sbjct: 87  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKK 146
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELF 164
            V     + +A   G+ FLETSAK+A NV + F
Sbjct: 147 VVDYTTAKEFADSLGIPFLETSAKNATNVEQSF 179

>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1 Length = 199

Iteration: 1
 Score =  130 bits (326), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 66/153 (43%), Positives = 91/153 (59%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           KL+L+GD G GK+ L+LRF    + +   STIG  F  + + L+  TIK  IWDTAGQER
Sbjct: 35  KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 94
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           + ++   YYRG       YD+T  +SF   K+W+QE+ R  + N+   LV NK DL  K+
Sbjct: 95  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKK 154
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELF 164
            V     + +A   G+ FLETSAK+A NV + F
Sbjct: 155 VVDYTTAKEFADSLGIPFLETSAKNATNVEQSF 187

>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In Complex With The Coiled-Coil Domain Of Lida From Legionella Pneumophila Length = 181

Iteration: 1
 Score =  129 bits (325), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 66/153 (43%), Positives = 90/153 (58%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           KL+L+GD G GK  L+LRF    + +   STIG  F  + + L+  TIK  IWDTAGQER
Sbjct: 18  KLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 77
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           + ++   YYRG       YD+T  +SF   K+W+QE+ R  + N+   LV NK DL  K+
Sbjct: 78  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKK 137
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELF 164
            V     + +A   G+ FLETSAK+A NV + F
Sbjct: 138 VVDYTTAKEFADSLGIPFLETSAKNATNVEQSF 170

>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In Complex With Fip2 Length = 178

Iteration: 1
 Score =  128 bits (321), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 63/159 (39%), Positives = 94/159 (59%), Gaps = 1/159 (0%)
Query: 8   NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTA 67
           N   K+VL+G+ G GKT+L+ RF + +F     +TIG  F T+ + L    +K  IWDTA
Sbjct: 8   NFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTA 67
Query: 68  GQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDL 127
           G ERY ++   YYRG       +D+T   ++   ++W++EL       +++ LV NK DL
Sbjct: 68  GLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDL 127
Query: 128 EEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYE 166
            + R+V  EE  ++A+ NGL FLETSA  + NV EL +E
Sbjct: 128 SQAREVPTEEARMFAENNGLLFLETSALDSTNV-ELAFE 165

>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp Length = 193

Iteration: 1
 Score =  127 bits (320), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 63/159 (39%), Positives = 94/159 (59%), Gaps = 1/159 (0%)
Query: 8   NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTA 67
           N   K+VL+G+ G GKT+L+ RF + +F     +TIG  F T+ + L    +K  IWDTA
Sbjct: 23  NFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTA 82
Query: 68  GQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDL 127
           G ERY ++   YYRG       +D+T   ++   ++W++EL       +++ LV NK DL
Sbjct: 83  GLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDL 142
Query: 128 EEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYE 166
            + R+V  EE  ++A+ NGL FLETSA  + NV EL +E
Sbjct: 143 SQAREVPTEEARMFAENNGLLFLETSALDSTNV-ELAFE 180

>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1 (Gtpase Domain) Complex Length = 175

Iteration: 1
 Score =  127 bits (318), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 65/153 (42%), Positives = 90/153 (58%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           KL+L+GD G GK+ L+LRF    + +   STIG  F  + + L+  TIK  IWDTAGQER
Sbjct: 10  KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 69
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           + ++   YYRG       YD+T  +SF   K+W+QE+ R  + N+   LV  K DL  K+
Sbjct: 70  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGIKCDLTTKK 129
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELF 164
            V     + +A   G+ FLETSAK+A NV + F
Sbjct: 130 VVDYTTAKEFADSLGIPFLETSAKNATNVEQSF 162

>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score =  126 bits (317), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 65/162 (40%), Positives = 96/162 (59%), Gaps = 1/162 (0%)
Query: 8   NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQ-ESTIGAAFFTQVLSLNEVTIKFDIWDT 66
           ++  K++L+GD G GKT L++RF  G F      ST+G  F  +VL ++ V +K  +WDT
Sbjct: 8   DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDT 67
Query: 67  AGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVD 126
           AGQER+ S+   YYR        YD+T+  SF+  + W+ E+      ++ + L+ NKVD
Sbjct: 68  AGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVD 127
Query: 127 LEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIG 168
              +R VK E+GE  A+E GL F+ETSAK+  NV+  F  I 
Sbjct: 128 SAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIA 169

>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase Length = 185

Iteration: 1
 Score =  126 bits (316), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 64/164 (39%), Positives = 95/164 (57%)
Query: 1   MARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIK 60
           + R S  +   KL+L+G+ G GK+ L+LRF    + +   STIG  F  + + L+  T+K
Sbjct: 12  VPRGSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVK 71
Query: 61  FDIWDTAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFL 120
             IWDTAGQER+ ++   YYRG       YD+T  +SF   K W+QE+ R     ++  L
Sbjct: 72  LQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLL 131
Query: 121 VANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELF 164
           V NK DL++KR V+ +  + +A  N + FLETSA  + NV + F
Sbjct: 132 VGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAF 175

>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex Length = 206

Iteration: 1
 Score =  125 bits (315), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 62/153 (40%), Positives = 91/153 (59%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           KL+L+G+ G GK+ L+LRF    + +   STIG  F  + + L+  T+K  IWDTAGQER
Sbjct: 10  KLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQER 69
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           + ++   YYRG       YD+T  +SF   K W+QE+ R     ++  LV NK DL++KR
Sbjct: 70  FRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKR 129
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELF 164
            V+ +  + +A  N + FLETSA  + NV + F
Sbjct: 130 VVEYDVAKEFADANKMPFLETSALDSTNVEDAF 162

>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With Prenylated Ypt1 Gtpase Length = 206

Iteration: 1
 Score =  125 bits (314), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 62/153 (40%), Positives = 91/153 (59%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           KL+L+G+ G GK+ L+LRF    + +   STIG  F  + + L+  T+K  IWDTAGQER
Sbjct: 10  KLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQER 69
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           + ++   YYRG       YD+T  +SF   K W+QE+ R     ++  LV NK DL++KR
Sbjct: 70  FRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKR 129
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELF 164
            V+ +  + +A  N + FLETSA  + NV + F
Sbjct: 130 VVEYDVAKEFADANKMPFLETSALDSTNVEDAF 162

>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp Length = 200

Iteration: 1
 Score =  125 bits (313), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 61/153 (39%), Positives = 93/153 (60%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K +++G  GTGK+ L+ +F++ +F      TIG  F ++V+++   T+K  IWDTAGQER
Sbjct: 27  KFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQER 86
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           + S+   YYRG       YDITS +++     W+ + +   +PN+++ L  NK DL+ +R
Sbjct: 87  FRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPER 146
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELF 164
           +V   E   +AQEN L FLETSA +  NV E F
Sbjct: 147 EVTFLEASRFAQENELMFLETSALTGENVEEAF 179

>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)- Imidotriphosphate Length = 170

Iteration: 1
 Score =  125 bits (313), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 62/158 (39%), Positives = 95/158 (60%), Gaps = 1/158 (0%)
Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +K++L+GD G GK+ L++RFV+ +F     +TIG  F  + + +N   +K  IWDTAGQE
Sbjct: 4   MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQE 63
Query: 71  RYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEK 130
           R+ ++   YYRG       YDIT   +F   K+W + +    N    + LV NK D+ E 
Sbjct: 64  RFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ET 122
Query: 131 RKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIG 168
           R V  ++GE  A+E G+ F+E+SAK+  NVNE+F+ + 
Sbjct: 123 RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLA 160

>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp Length = 185

Iteration: 1
 Score =  123 bits (309), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 62/156 (39%), Positives = 91/156 (58%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K+VL+GD G GK++L+ RF   +F    +STIG  F T+ + +    IK  IWDTAG ER
Sbjct: 12  KIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWDTAGLER 71
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           Y ++   YYRG       YDI+   S+E    W+ EL+   + N+ + L+ NK DL   R
Sbjct: 72  YRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTELRENADDNVAVGLIGNKSDLAHLR 131
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
            V  +E + +A EN + F ETSA ++ NV++ F E+
Sbjct: 132 AVPTDEAKNFAMENQMLFTETSALNSDNVDKAFREL 167

>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp Length = 170

Iteration: 1
 Score =  123 bits (308), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 63/157 (40%), Positives = 94/157 (59%), Gaps = 1/157 (0%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K++L+GD G GK+ L++RFV+ +F     +TIG  F  + + +N   +K  IWDTAGQER
Sbjct: 5   KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER 64
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           + ++   YYRG       YDIT   +F   K+W + +    N    + LV NK D  E R
Sbjct: 65  FRTITTAYYRGAXGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD-XETR 123
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIG 168
            V  ++GE  A+E G+ F+E+SAK+  NVNE+F+ + 
Sbjct: 124 VVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLA 160

>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With Rab8a:gppnhp Length = 174

Iteration: 1
 Score =  123 bits (308), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 60/157 (38%), Positives = 92/157 (58%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           KL+L+GD G GKT ++ RF +  F     STIG  F  + + L+   IK  IWDTAGQER
Sbjct: 8   KLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQER 67
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           + ++   YYRG       YDIT+  SF+  + W++ ++   + ++   ++ NK D+ +KR
Sbjct: 68  FRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKR 127
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIG 168
           +V  E GE  A + G+ F+ETSAK+  NV   F+ + 
Sbjct: 128 QVSKERGEKLALDYGIKFMETSAKANINVENAFFTLA 164

>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4 Length = 183

Iteration: 1
 Score =  123 bits (308), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 60/157 (38%), Positives = 92/157 (58%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           KL+L+GD G GKT ++ RF +  F     STIG  F  + + L+   IK  IWDTAGQER
Sbjct: 10  KLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQER 69
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           + ++   YYRG       YDIT+  SF+  + W++ ++   + ++   ++ NK D+ +KR
Sbjct: 70  FRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKR 129
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIG 168
           +V  E GE  A + G+ F+ETSAK+  NV   F+ + 
Sbjct: 130 QVSKERGEKLALDYGIKFMETSAKANINVENAFFTLA 166

>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef Domain, And Phosphate Complex Length = 174

Iteration: 1
 Score =  122 bits (307), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 60/158 (37%), Positives = 95/158 (60%), Gaps = 1/158 (0%)
Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +K++L+GD G GK+ L++RFV+ +F     +TIG  F  + + +N   +K  +WDTAGQE
Sbjct: 8   MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQE 67
Query: 71  RYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEK 130
           R+ ++   YYRG       YD+T   +F   K+W + +    N    + LV NK D+ E 
Sbjct: 68  RFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ET 126
Query: 131 RKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIG 168
           R V  ++GE  A+E G+ F+E+SAK+  NVNE+F+ + 
Sbjct: 127 RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLA 164

>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi Length = 213

Iteration: 1
 Score =  122 bits (307), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 60/157 (38%), Positives = 95/157 (60%), Gaps = 1/157 (0%)
Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +K++L+GD G GK+ L++RFV+ +F     +TIG  F  + + +N   +K  +WDTAGQE
Sbjct: 21  MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQE 80
Query: 71  RYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEK 130
           R+ ++   YYRG       YD+T   +F   K+W + +    N    + LV NK D+ E 
Sbjct: 81  RFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ET 139
Query: 131 RKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
           R V  ++GE  A+E G+ F+E+SAK+  NVNE+F+ +
Sbjct: 140 RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTL 176

>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex With Gdp Length = 192

Iteration: 1
 Score =  121 bits (304), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 58/163 (35%), Positives = 98/163 (60%), Gaps = 1/163 (0%)
Query: 8   NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTA 67
           + +++++++G  G GKTSL+ RF    F +  +ST+G  F  + + L    I+  IWDTA
Sbjct: 24  DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTA 83
Query: 68  GQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDL 127
           GQER++S+   YYR        YDIT  ++F+   KW++ + +  + +  + LV NK+D 
Sbjct: 84  GQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDC 143
Query: 128 EEKRKVKNEEGELYAQE-NGLSFLETSAKSAHNVNELFYEIGD 169
           E  R++  ++GE +AQ+  G+ F E SAK   NV+E+F ++ D
Sbjct: 144 ETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVD 186

>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab Gtpase Sec4p Length = 170

Iteration: 1
 Score =  121 bits (303), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 61/157 (38%), Positives = 94/157 (59%), Gaps = 1/157 (0%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K++L+GD G GK+ L++RFV+ +F     +TIG  F  + + +N   +K  +WDTAGQER
Sbjct: 5   KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQER 64
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           + ++   YYRG       YD+T   +F   K+W + +    N    + LV NK D  E R
Sbjct: 65  FRTITTAYYRGAXGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD-XETR 123
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIG 168
            V  ++GE  A+E G+ F+E+SAK+  NVNE+F+ + 
Sbjct: 124 VVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLA 160

>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a Length = 186

Iteration: 1
 Score =  120 bits (302), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 59/155 (38%), Positives = 93/155 (60%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K +++G+ GTGK+ L+ +F++ +F D    TIG  F ++++++    +K  IWDTAGQER
Sbjct: 12  KFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQER 71
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           + S+   YYRG       YDITS +++     W+ + +   + N+++ L  NK DL+  R
Sbjct: 72  FRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADR 131
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYE 166
           +V   E   +AQEN L FLETSA +  NV E F +
Sbjct: 132 EVTFLEASRFAQENELMFLETSALTGENVEEAFVQ 166

>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35 Length = 181

Iteration: 1
 Score =  119 bits (299), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 61/153 (39%), Positives = 89/153 (58%), Gaps = 1/153 (0%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           KL+++GD G GK+SL+LRF    F     +TIG  F  + + +N   +K  IWDTAGQER
Sbjct: 11  KLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQER 70
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           + ++   YYRG       YD+TS +SF   K+W+ E+  Q   ++   LV NK D  E++
Sbjct: 71  FRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEIN-QNCDDVCRILVGNKNDDPERK 129
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELF 164
            V+ E+   +A + G+   ETSAK   NV E+F
Sbjct: 130 VVETEDAYKFAGQMGIQLFETSAKENVNVEEMF 162

>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp Length = 201

Iteration: 1
 Score =  119 bits (297), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 62/157 (39%), Positives = 87/157 (55%), Gaps = 1/157 (0%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           KLVL+GD   GKT +V RF  G F + Q STIG  F  + L +    +K  IWDTAGQER
Sbjct: 31  KLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQER 90
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           + ++   YYR        YDIT   SF     W++++++    N++  L+ NK DL E R
Sbjct: 91  FRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELR 150
Query: 132 KVKNEEGELYAQE-NGLSFLETSAKSAHNVNELFYEI 167
           +V   E +  A+  + L  +ETSAK + NV E F  +
Sbjct: 151 EVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRV 187

>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a Length = 175

Iteration: 1
 Score =  119 bits (297), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 58/155 (37%), Positives = 93/155 (60%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K +++G+ GTGK+ L+ +F++ +F D    TIG  F ++++++    +K  IWDTAGQER
Sbjct: 13  KFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQER 72
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           + S+   YYRG       YDITS +++     W+ + +   + N+++ L  NK DL+  R
Sbjct: 73  FRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADR 132
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYE 166
           +V   E   +AQEN L FLETSA +  +V E F +
Sbjct: 133 EVTFLEASRFAQENELMFLETSALTGEDVEEAFVQ 167

>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The Central Rab Binding Domain Of Rabenosyn-5 Length = 172

Iteration: 1
 Score =  116 bits (290), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 57/155 (36%), Positives = 92/155 (59%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K +++G+ GTGK+ L+ +F++ +F D    TIG  F ++++++    +K  IWDTAG ER
Sbjct: 10  KFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGLER 69
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           + S+   YYRG       YDITS +++     W+ + +   + N+++ L  NK DL+  R
Sbjct: 70  FRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADR 129
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYE 166
           +V   E   +AQEN L FLETSA +  +V E F +
Sbjct: 130 EVTFLEASRFAQENELMFLETSALTGEDVEEAFVQ 164

>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex With Monoprenylated Rab7 Protein Length = 207

Iteration: 1
 Score =  115 bits (287), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 61/170 (35%), Positives = 99/170 (58%), Gaps = 6/170 (3%)
Query: 4   TSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDI 63
           TS K + +K+++LGD G GKTSL+ ++V  +F +  ++TIGA F T+ + +++  +   I
Sbjct: 2   TSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQI 61
Query: 64  WDTAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNP----NLIMF 119
           WDTAGQER+ SL   +YRG       +D+T+ ++F+    W  E   Q +P    N    
Sbjct: 62  WDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFV 121
Query: 120 LVANKVDLEEKRKVKNEEGELYA-QENGLSFLETSAKSAHNVNELFYEIG 168
           ++ NK+DL E R+V  +  + +   +N + + ETSAK A NV + F  I 
Sbjct: 122 VLGNKIDL-ENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIA 170

>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp Length = 191

Iteration: 1
 Score =  114 bits (286), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 60/165 (36%), Positives = 90/165 (54%)
Query: 6   NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWD 65
           N +   KL+++G+   GKTS + R+    F     ST+G  F  + +  +E  +K  IWD
Sbjct: 19  NFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWD 78
Query: 66  TAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKV 125
           TAGQERY ++   YYRG       YDIT+ +SF   + W  +++     N  + LV NK 
Sbjct: 79  TAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKC 138
Query: 126 DLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIGDC 170
           D+EE+R V  E+G+L A++ G  F E SAK   +V + F  + D 
Sbjct: 139 DMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDA 183

>pdb|1VG1|A Chain A, Gdp-bound Rab7 Length = 185

Iteration: 1
 Score =  114 bits (286), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 61/170 (35%), Positives = 99/170 (58%), Gaps = 6/170 (3%)
Query: 4   TSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDI 63
           TS K + +K+++LGD G GKTSL+ ++V  +F +  ++TIGA F T+ + +++  +   I
Sbjct: 2   TSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQI 61
Query: 64  WDTAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNP----NLIMF 119
           WDTAGQER+ SL   +YRG       +D+T+ ++F+    W  E   Q +P    N    
Sbjct: 62  WDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFV 121
Query: 120 LVANKVDLEEKRKVKNEEGELYA-QENGLSFLETSAKSAHNVNELFYEIG 168
           ++ NK+DL E R+V  +  + +   +N + + ETSAK A NV + F  I 
Sbjct: 122 VLGNKIDL-ENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIA 170

>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7 Length = 207

Iteration: 1
 Score =  113 bits (283), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 60/170 (35%), Positives = 98/170 (57%), Gaps = 6/170 (3%)
Query: 4   TSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDI 63
           TS K + +K+++LGD G GKTSL+ ++V  +F +  ++TIGA F T+ + +++  +   I
Sbjct: 2   TSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQI 61
Query: 64  WDTAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNP----NLIMF 119
           WDTAGQER+ SL   +YRG       +D+T+ ++F+    W  E   Q +P    N    
Sbjct: 62  WDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFV 121
Query: 120 LVANKVDLEEKRKVKNEEGELYA-QENGLSFLETSAKSAHNVNELFYEIG 168
           ++ NK+D  E R+V  +  + +   +N + + ETSAK A NV + F  I 
Sbjct: 122 VLGNKIDF-ENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIA 170

>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp Length = 195

Iteration: 1
 Score =  112 bits (281), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 60/158 (37%), Positives = 92/158 (58%), Gaps = 2/158 (1%)
Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +K++++G+ G GK+SL+LRF    F     +TIG  F  + +S++    K  IWDTAGQE
Sbjct: 16  LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 75
Query: 71  RYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPN-LIMFLVANKVDLEE 129
           R+ +L P YYRG       YD+T  D+F +   W+ EL+     N ++  LV NK+D +E
Sbjct: 76  RFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNXLVGNKID-KE 134
Query: 130 KRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
            R+V   EG  +A+++   F+E SAK+   V   F E+
Sbjct: 135 NREVDRNEGLKFARKHSXLFIEASAKTCDGVQCAFEEL 172

>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp) Length = 207

Iteration: 1
 Score =  112 bits (279), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 60/170 (35%), Positives = 98/170 (57%), Gaps = 6/170 (3%)
Query: 4   TSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDI 63
           TS K + +K+++LGD G GKTSL+ ++V  +F +  ++TIGA F T+ + +++  +   I
Sbjct: 2   TSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQI 61
Query: 64  WDTAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNP----NLIMF 119
           WDTAG ER+ SL   +YRG       +D+T+ ++F+    W  E   Q +P    N    
Sbjct: 62  WDTAGLERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFV 121
Query: 120 LVANKVDLEEKRKVKNEEGELYA-QENGLSFLETSAKSAHNVNELFYEIG 168
           ++ NK+DL E R+V  +  + +   +N + + ETSAK A NV + F  I 
Sbjct: 122 VLGNKIDL-ENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIA 170

>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp Length = 189

Iteration: 1
 Score =  112 bits (279), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 59/158 (37%), Positives = 85/158 (53%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           KL+L+G+   GKTS + R+    F     ST+G  F  + +  ++  IK  IWDTAGQER
Sbjct: 24  KLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQER 83
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           Y ++   YYRG       YDI + +SF   + W  +++     N  + LV NK DLE++R
Sbjct: 84  YRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDER 143
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIGD 169
            V  E+G   A + G  F E SAK   NV ++F  + D
Sbjct: 144 VVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVD 181

>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169

Iteration: 1
 Score =  111 bits (278), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 59/164 (35%), Positives = 86/164 (52%)
Query: 6   NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWD 65
           N +   K++++G+   GKTS + R+    F     ST+G  F  + +  N+  IK  IWD
Sbjct: 1   NFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWD 60
Query: 66  TAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKV 125
           TAGQERY ++   YYRG       YDIT+ +SF   + W  +++     N  + LV NK 
Sbjct: 61  TAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKC 120
Query: 126 DLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIGD 169
           D+E++R V +E G   A   G  F E SAK   NV + F  + D
Sbjct: 121 DMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVD 164

>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182

Iteration: 1
 Score =  110 bits (274), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 69/174 (39%), Positives = 96/174 (55%), Gaps = 18/174 (10%)
Query: 7   KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFD---- 62
           KNI +K+++LGD G GKTSL+ R+V  ++    ++TIGA F T+     EVT+  D    
Sbjct: 6   KNI-LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTK-----EVTVDGDKVAT 59
Query: 63  --IWDTAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGN---PNLI 117
             +WDTAGQER+ SL   +YRG       YD+T+  SFE  K W  E     N   P   
Sbjct: 60  MQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETF 119
Query: 118 MFLV-ANKVDLEEKRKVKNEEG--ELYAQENGLSFLETSAKSAHNVNELFYEIG 168
            F++  NK+D EE +K+ +E+   EL      +    TSAK+A NV+  F EI 
Sbjct: 120 PFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIA 173

>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal Structure Of The Small G Protein Rab3a Complexed With The Effector Domain Of Rabphilin-3a Length = 203

Iteration: 1
 Score =  106 bits (265), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 59/158 (37%), Positives = 84/158 (53%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K++++G+   GKTS + R+    F     ST+G  F  + +  N+  IK  IWDTAG ER
Sbjct: 10  KILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLER 69
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           Y ++   YYRG       YDIT+ +SF   + W  +++     N  + LV NK D E++R
Sbjct: 70  YRTITTAYYRGAXGFILXYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDXEDER 129
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIGD 169
            V +E G   A   G  F E SAK   NV + F  + D
Sbjct: 130 VVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVD 167

>pdb|4FMC|F Chain F, Espg-Rab1 Complex Length = 117

Iteration: 1
 Score =  105 bits (261), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 50/115 (43%), Positives = 69/115 (60%)
Query: 13  LVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERY 72
           L+L+GD G GK+ L+LRF    + +   STIG  F  + + L+  TIK  IWDTAGQER+
Sbjct: 1   LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 60
Query: 73  HSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDL 127
            ++   YYRG       YD+T  +SF   K+W+QE+ R  + N+   LV NK DL
Sbjct: 61  RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 115

>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase Length = 189

Iteration: 1
 Score =  102 bits (255), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 54/150 (36%), Positives = 82/150 (54%), Gaps = 2/150 (1%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K++++GD   GKT L  RF  G+F D  E+TIG  F  + + ++   IK  +WDTAGQER
Sbjct: 22  KIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQER 81
Query: 72  YH-SLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLI-MFLVANKVDLEE 129
           +  S+   YYR        YD+T+M SF     W++E ++    N I   LV NK DL  
Sbjct: 82  FRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRS 141
Query: 130 KRKVKNEEGELYAQENGLSFLETSAKSAHN 159
             +V  +  + +A  + +   ETSAK+ ++
Sbjct: 142 AIQVPTDLAQKFADTHSMPLFETSAKNPND 171

>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant Length = 216

Iteration: 1
 Score =  100 bits (249), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 60/164 (36%), Positives = 90/164 (54%), Gaps = 3/164 (1%)
Query: 1   MARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIK 60
           MA      +Q KLVL+GD GTGKT+ V R + G+F     +T+G      V   N   IK
Sbjct: 1   MAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIK 60
Query: 61  FDIWDTAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFL 120
           F++WDTAGQE+Y  L   YY         +D+TS  +++    W ++L R    N+ + L
Sbjct: 61  FNVWDTAGQEKYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVL 119
Query: 121 VANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELF 164
             NKVD+++ RKVK +    + ++N L + + SAKS +N  + F
Sbjct: 120 CGNKVDIKD-RKVKAKSIVFHRKKN-LQYYDISAKSNYNFEKPF 161

>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score =  100 bits (249), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 64/167 (38%), Positives = 89/167 (53%), Gaps = 6/167 (3%)
Query: 5   SNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIW 64
           S K++ +K++LLGD G GK+SL+ R+V  +F      TIG  F  + L ++   +   IW
Sbjct: 2   SGKSLLLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIW 61
Query: 65  DTAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQG---NPNLIMFLV 121
           DTAGQER+ SL   +YRG       + +    SFE    W +E        +P    F+V
Sbjct: 62  DTAGQERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVV 121
Query: 122 -ANKVDLEEKRKVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYE 166
             NKVD +E R+V  EE + +  ENG   +LETSAK   NV   F E
Sbjct: 122 LGNKVD-KEDRQVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAFEE 167

>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group Length = 168

Iteration: 1
 Score =  100 bits (248), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 52/156 (33%), Positives = 87/156 (55%), Gaps = 1/156 (0%)
Query: 9   IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAG 68
           + +K+V++G+   GK+S++ R+ KG F    + TIG  F  + + +N+  ++  +WDTAG
Sbjct: 4   VAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAG 63
Query: 69  QERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLE 128
           QE + ++   YYRG       +  T  +SFE    W +++  +   ++   LV NK+DL 
Sbjct: 64  QEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVG-DIPTALVQNKIDLL 122
Query: 129 EKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELF 164
           +   +KNEE E  A+   L F  TS K   NV+E+F
Sbjct: 123 DDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVF 158

>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt The Gtp- Bound Conformation: Implications For Nuclear Import Complex Assembly Dynamics Length = 216

Iteration: 1
 Score = 99.0 bits (245), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 59/164 (35%), Positives = 90/164 (54%), Gaps = 3/164 (1%)
Query: 1   MARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIK 60
           MA      +Q KLVL+GD GTGKT+ V R + G+F     +T+G      V   N   IK
Sbjct: 1   MAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIK 60
Query: 61  FDIWDTAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFL 120
           F++WDTAGQE++  L   YY         +D+TS  +++    W ++L R    N+ + L
Sbjct: 61  FNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVL 119
Query: 121 VANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELF 164
             NKVD+++ RKVK +    + ++N L + + SAKS +N  + F
Sbjct: 120 CGNKVDIKD-RKVKAKSIVFHRKKN-LQYYDISAKSNYNFEKPF 161

>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear Transport Complex Length = 216

Iteration: 1
 Score = 99.0 bits (245), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 60/164 (36%), Positives = 91/164 (55%), Gaps = 3/164 (1%)
Query: 1   MARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIK 60
           MA      +Q KLVL+GD GTGKT+ V R + G+F     +T+G      V   N   IK
Sbjct: 1   MAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIK 60
Query: 61  FDIWDTAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFL 120
           F++WDTAGQE++  L   YY         +D+TS  +++    W ++L R    N+ + L
Sbjct: 61  FNVWDTAGQEKFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVL 119
Query: 121 VANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELF 164
             NKVD+++ RKVK +    + ++N L + + SAKS +N  + F
Sbjct: 120 CGNKVDIKD-RKVKAKSIVFHRKKN-LQYYDISAKSNYNFEKPF 161

>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant Length = 216

Iteration: 1
 Score = 99.0 bits (245), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 59/164 (35%), Positives = 90/164 (54%), Gaps = 3/164 (1%)
Query: 1   MARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIK 60
           MA      +Q KLVL+GD GTGKT+ V R + G+F     +T+G      V   N   IK
Sbjct: 1   MAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIK 60
Query: 61  FDIWDTAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFL 120
           F++WDTAGQE++  L   YY         +D+TS  +++    W ++L R    N+ + L
Sbjct: 61  FNVWDTAGQEKFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVL 119
Query: 121 VANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELF 164
             NKVD+++ RKVK +    + ++N L + + SAKS +N  + F
Sbjct: 120 CGNKVDIKD-RKVKAKSIVFHRKKN-LQYYDISAKSNYNFEKPF 161

>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex Length = 216

Iteration: 1
 Score = 99.0 bits (245), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 59/164 (35%), Positives = 90/164 (54%), Gaps = 3/164 (1%)
Query: 1   MARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIK 60
           MA      +Q KLVL+GD GTGKT+ V R + G+F     +T+G      V   N   IK
Sbjct: 1   MAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIK 60
Query: 61  FDIWDTAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFL 120
           F++WDTAGQE++  L   YY         +D+TS  +++    W ++L R    N+ + L
Sbjct: 61  FNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVL 119
Query: 121 VANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELF 164
             NKVD+++ RKVK +    + ++N L + + SAKS +N  + F
Sbjct: 120 CGNKVDIKD-RKVKAKSIVFHRKKN-LQYYDISAKSNYNFEKPF 161

>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 176

Iteration: 1
 Score = 99.0 bits (245), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 59/164 (35%), Positives = 90/164 (54%), Gaps = 3/164 (1%)
Query: 1   MARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIK 60
           MA      +Q KLVL+GD GTGKT+ V R + G+F     +T+G      V   N   IK
Sbjct: 1   MAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIK 60
Query: 61  FDIWDTAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFL 120
           F++WDTAGQE++  L   YY         +D+TS  +++    W ++L R    N+ + L
Sbjct: 61  FNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVL 119
Query: 121 VANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELF 164
             NKVD+++ RKVK +    + ++N L + + SAKS +N  + F
Sbjct: 120 CGNKVDIKD-RKVKAKSIVFHRKKN-LQYYDISAKSNYNFEKPF 161

>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 198

Iteration: 1
 Score = 98.6 bits (244), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 53/150 (35%), Positives = 79/150 (52%), Gaps = 2/150 (1%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K++++GD   GKT L  RF  G+F D  E+TIG  F  + + ++   IK  +WDTAGQER
Sbjct: 31  KIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQER 90
Query: 72  YH-SLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLI-MFLVANKVDLEE 129
           +  S+   YYR        YD T+  SF     W++E ++    N I   LV NK DL  
Sbjct: 91  FRKSMVQHYYRNVHAVVFVYDXTNXASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRS 150
Query: 130 KRKVKNEEGELYAQENGLSFLETSAKSAHN 159
             +V  +  + +A  +     ETSAK+ ++
Sbjct: 151 AIQVPTDLAQKFADTHSXPLFETSAKNPND 180

>pdb|1BYU|A Chain A, Canine Gdp-Ran Length = 216

Iteration: 1
 Score = 98.6 bits (244), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 59/164 (35%), Positives = 89/164 (54%), Gaps = 3/164 (1%)
Query: 1   MARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIK 60
           MA      +Q KLVL+GD GTGKT+ V R + G+F      T+G      V   N   IK
Sbjct: 1   MAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIK 60
Query: 61  FDIWDTAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFL 120
           F++WDTAGQE++  L   YY         +D+TS  +++    W ++L R    N+ + L
Sbjct: 61  FNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVL 119
Query: 121 VANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELF 164
             NKVD+++ RKVK +    + ++N L + + SAKS +N  + F
Sbjct: 120 CGNKVDIKD-RKVKAKSIVFHRKKN-LQYYDISAKSNYNFEKPF 161

>pdb|2BKU|A Chain A, Kap95p:rangtp Complex Length = 177

Iteration: 1
 Score = 98.6 bits (244), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 59/164 (35%), Positives = 89/164 (54%), Gaps = 3/164 (1%)
Query: 1   MARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIK 60
           MA      +Q KLVL+GD GTGKT+ V R + G+F      T+G      V   N   IK
Sbjct: 1   MAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIK 60
Query: 61  FDIWDTAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFL 120
           F++WDTAGQE++  L   YY         +D+TS  +++    W ++L R    N+ + L
Sbjct: 61  FNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVL 119
Query: 121 VANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELF 164
             NKVD+++ RKVK +    + ++N L + + SAKS +N  + F
Sbjct: 120 CGNKVDIKD-RKVKAKSIVFHRKKN-LQYYDISAKSNYNFEKPF 161

>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1 Length = 169

Iteration: 1
 Score = 97.4 bits (241), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 57/158 (36%), Positives = 95/158 (60%), Gaps = 3/158 (1%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           KLV+LG +G GK++L ++FV+G F +  + TI  ++  QV  ++      +I DTAG E+
Sbjct: 7   KLVVLGSVGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQV-EVDAQQCMLEILDTAGTEQ 65
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEK 130
           + ++  +Y +        Y IT+  +F   +   +++ R +   ++ M LV NK DLE++
Sbjct: 66  FTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLEDE 125
Query: 131 RKVKNEEGE-LYAQENGLSFLETSAKSAHNVNELFYEI 167
           R V  E+G+ L  Q N  +FLE+SAKS  NVNE+FY++
Sbjct: 126 RVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDL 163

>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp Length = 221

Iteration: 1
 Score = 96.7 bits (239), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 58/163 (35%), Positives = 89/163 (54%), Gaps = 3/163 (1%)
Query: 2   ARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKF 61
           A      +Q KLVL+GD GTGKT+ V R + G+F     +T+G      V   N   IKF
Sbjct: 7   AAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKF 66
Query: 62  DIWDTAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLV 121
           ++WDTAGQE++  L   YY         +D+TS  +++    W ++L R    N+ + L 
Sbjct: 67  NVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLC 125
Query: 122 ANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELF 164
            NKVD+++ RKVK +    + ++N L + + SAKS +N  + F
Sbjct: 126 GNKVDIKD-RKVKAKSIVFHRKKN-LQYYDISAKSNYNFEKPF 166

>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex Length = 204

Iteration: 1
 Score = 96.3 bits (238), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 57/156 (36%), Positives = 88/156 (56%), Gaps = 3/156 (1%)
Query: 9   IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAG 68
           +Q KLVL+GD GTGKT+ V R + G+F     +T+G      V   N   IKF++WDTAG
Sbjct: 2   VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAG 61
Query: 69  QERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLE 128
           QE++  L   YY         +D+TS  +++    W ++L R    N+ + L  NKVD++
Sbjct: 62  QEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIK 120
Query: 129 EKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELF 164
           + RKVK +    + ++N L + + SAKS +N  + F
Sbjct: 121 D-RKVKAKSIVFHRKKN-LQYYDISAKSNYNFEKPF 154

>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer With An Active Conformation Of Switch Ii Length = 177

Iteration: 1
 Score = 95.9 bits (237), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 59/167 (35%), Positives = 88/167 (52%), Gaps = 6/167 (3%)
Query: 5   SNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIW 64
           + K+   K++LLGD G GK+SL+ R+V  +F      TIG  F  + L ++   +   IW
Sbjct: 4   AGKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIW 63
Query: 65  DTAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGN---PNLIMFLV 121
           DTAGQER+ SL   +YRG       + +    SF+    W +E     +   P    F++
Sbjct: 64  DTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVI 123
Query: 122 -ANKVDLEEKRKVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYE 166
             NK+D+ E R+V  EE + + ++NG   + ETSAK A NV   F E
Sbjct: 124 LGNKIDISE-RQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEE 169

>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex Length = 182

Iteration: 1
 Score = 95.9 bits (237), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 58/164 (35%), Positives = 89/164 (54%), Gaps = 3/164 (1%)
Query: 1   MARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIK 60
           MA      +Q KLVL+GD GTGKT+ V R + G+F     +T+G      V   N   IK
Sbjct: 3   MAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIK 62
Query: 61  FDIWDTAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFL 120
           F++WDTAG E++  L   YY         +D+TS  +++    W ++L R    N+ + L
Sbjct: 63  FNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVL 121
Query: 121 VANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELF 164
             NKVD+++ RKVK +    + ++N L + + SAKS +N  + F
Sbjct: 122 CGNKVDIKD-RKVKAKSIVFHRKKN-LQYYDISAKSNYNFEKPF 163

>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A Novel Antiviral Drug Target Length = 177

Iteration: 1
 Score = 95.9 bits (237), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 59/167 (35%), Positives = 88/167 (52%), Gaps = 6/167 (3%)
Query: 5   SNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIW 64
           + K+   K++LLGD G GK+SL+ R+V  +F      TIG  F  + L ++   +   IW
Sbjct: 2   AGKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIW 61
Query: 65  DTAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGN---PNLIMFLV 121
           DTAGQER+ SL   +YRG       + +    SF+    W +E     +   P    F++
Sbjct: 62  DTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVI 121
Query: 122 -ANKVDLEEKRKVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYE 166
             NK+D+ E R+V  EE + + ++NG   + ETSAK A NV   F E
Sbjct: 122 LGNKIDISE-RQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEE 167

>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant Length = 216

Iteration: 1
 Score = 95.9 bits (237), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 58/164 (35%), Positives = 89/164 (54%), Gaps = 3/164 (1%)
Query: 1   MARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIK 60
           MA      +Q KLVL+GD GTGKT+ V R + G+F     +T+G      V   N   IK
Sbjct: 1   MAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIK 60
Query: 61  FDIWDTAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFL 120
           F++WDTAG E++  L   YY         +D+TS  +++    W ++L R    N+ + L
Sbjct: 61  FNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVL 119
Query: 121 VANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELF 164
             NKVD+++ RKVK +    + ++N L + + SAKS +N  + F
Sbjct: 120 CGNKVDIKD-RKVKAKSIVFHRKKN-LQYYDISAKSNYNFEKPF 161

>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex Length = 167

Iteration: 1
 Score = 95.9 bits (237), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 57/158 (36%), Positives = 94/158 (59%), Gaps = 3/158 (1%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           KLV+LG  G GK++L ++FV+G F +  + TI  ++  QV  ++      +I DTAG E+
Sbjct: 5   KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQV-EVDAQQCMLEILDTAGTEQ 63
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEK 130
           + ++  +Y +        Y IT+  +F   +   +++ R +   ++ M LV NK DLE++
Sbjct: 64  FTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLEDE 123
Query: 131 RKVKNEEGE-LYAQENGLSFLETSAKSAHNVNELFYEI 167
           R V  E+G+ L  Q N  +FLE+SAKS  NVNE+FY++
Sbjct: 124 RVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDL 161

>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase Length = 179

Iteration: 1
 Score = 95.1 bits (235), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 58/168 (34%), Positives = 89/168 (52%), Gaps = 6/168 (3%)
Query: 4   TSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDI 63
           ++ K+   K++LLGD G GK+SL+ R+V  +F      TIG  F  + L ++   +   I
Sbjct: 5   SAGKSSLFKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQI 64
Query: 64  WDTAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGN---PNLIMFL 120
           WDTAGQER+ SL   +YRG       + +    SF+    W +E     +   P    F+
Sbjct: 65  WDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFV 124
Query: 121 V-ANKVDLEEKRKVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYE 166
           +  NK D++E R+V  EE + + ++NG   + ETSAK + NV   F E
Sbjct: 125 ILGNKTDIKE-RQVSTEEAQAWCKDNGDYPYFETSAKDSTNVAAAFEE 171

>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e) Complexed With Gppnhp And The Ras-Binding-Domain Of Human C-Raf1, Residues 51-131 Length = 167

Iteration: 1
 Score = 94.4 bits (233), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 57/158 (36%), Positives = 93/158 (58%), Gaps = 3/158 (1%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           KLV+LG  G GK++L ++FV+G F D  + TI  ++  QV  ++      +I DTAG E+
Sbjct: 5   KLVVLGSGGVGKSALTVQFVQGIFVDEYDPTIEDSYRKQV-EVDCQQCMLEILDTAGTEQ 63
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEK 130
           + ++  +Y +        Y IT+  +F   +   +++ R +   ++ M LV NK DLE++
Sbjct: 64  FTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDE 123
Query: 131 RKVKNEEGE-LYAQENGLSFLETSAKSAHNVNELFYEI 167
           R V  E+G+ L  Q    +FLE+SAKS  NVNE+FY++
Sbjct: 124 RVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDL 161

>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp Length = 199

Iteration: 1
 Score = 94.4 bits (233), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 53/157 (33%), Positives = 80/157 (50%), Gaps = 6/157 (3%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K+VL GD   GK+S ++R  K +F +   +T+G  F  + L ++       +WDTAGQER
Sbjct: 30  KIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQER 89
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDL---- 127
           + S+A  Y+R        YD+T   SF   ++WV  ++   +  + + LV NK D+    
Sbjct: 90  FRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTA 149
Query: 128 --EEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNE 162
             E ++ V    GE  A   G  F ETSAK   N+ E
Sbjct: 150 ATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVE 186

>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium Botulinum C3 Exoenzyme By Rala Gtpase Length = 206

Iteration: 1
 Score = 94.4 bits (233), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 52/157 (33%), Positives = 97/157 (61%), Gaps = 2/157 (1%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K++++G  G GK++L L+F+  +F +  E T   ++  +V+ L+   ++ DI DTAGQE 
Sbjct: 16  KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQED 74
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEK 130
           Y ++   Y+R        + IT M+SF     + +++ R + + N+   LV NK DLE+K
Sbjct: 75  YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 134
Query: 131 RKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
           R+V  EE +  A++  ++++ETSAK+  NV+++F+++
Sbjct: 135 RQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDL 171

>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear Export Complex Length = 176

Iteration: 1
 Score = 93.6 bits (231), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 56/156 (35%), Positives = 87/156 (55%), Gaps = 3/156 (1%)
Query: 9   IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAG 68
           +Q KLVL+GD GTGKT+ V R + G+F     +T+G      V   N   IKF++WDTAG
Sbjct: 5   VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAG 64
Query: 69  QERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLE 128
            E++  L   YY         +D+TS  +++    W ++L R    N+ + L  NKVD++
Sbjct: 65  LEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIK 123
Query: 129 EKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELF 164
           + RKVK +    + ++N L + + SAKS +N  + F
Sbjct: 124 D-RKVKAKSIVFHRKKN-LQYYDISAKSNYNFEKPF 157

>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A Novel Type Of Action Of A Bacterial Exoenzyme Length = 187

Iteration: 1
 Score = 93.6 bits (231), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 52/157 (33%), Positives = 97/157 (61%), Gaps = 2/157 (1%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K++++G  G GK++L L+F+  +F +  E T   ++  +V+ L+   ++ DI DTAGQE 
Sbjct: 20  KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQED 78
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEK 130
           Y ++   Y+R        + IT M+SF     + +++ R + + N+   LV NK DLE+K
Sbjct: 79  YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 138
Query: 131 RKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
           R+V  EE +  A++  ++++ETSAK+  NV+++F+++
Sbjct: 139 RQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDL 175

>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding Domain Complex Length = 175

Iteration: 1
 Score = 93.6 bits (231), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 52/157 (33%), Positives = 97/157 (61%), Gaps = 2/157 (1%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K++++G  G GK++L L+F+  +F +  E T   ++  +V+ L+   ++ DI DTAGQE 
Sbjct: 8   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQED 66
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEK 130
           Y ++   Y+R        + IT M+SF     + +++ R + + N+   LV NK DLE+K
Sbjct: 67  YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 126
Query: 131 RKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
           R+V  EE +  A++  ++++ETSAK+  NV+++F+++
Sbjct: 127 RQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDL 163

>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex Length = 221

Iteration: 1
 Score = 93.6 bits (231), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 57/163 (34%), Positives = 88/163 (53%), Gaps = 3/163 (1%)
Query: 2   ARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKF 61
           A      +Q KLVL+GD GTGKT+ V R + G+      +T+G      V   N   IKF
Sbjct: 7   AAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGESEKKYVATLGVEVHPLVFHTNRGPIKF 66
Query: 62  DIWDTAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLV 121
           ++WDTAGQE++  L   YY         +D+TS  +++    W ++L R    N+ + L 
Sbjct: 67  NVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLC 125
Query: 122 ANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELF 164
            NKVD+++ RKVK +    + ++N L + + SAKS +N  + F
Sbjct: 126 GNKVDIKD-RKVKAKSIVFHRKKN-LQYYDISAKSNYNFEKPF 166

>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two Novel Binding Sites That Are Also Present In Ras And Rap Length = 168

Iteration: 1
 Score = 92.8 bits (229), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 52/157 (33%), Positives = 96/157 (61%), Gaps = 2/157 (1%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K++++G  G GK++L L+F+  +F +  E T   ++  +V+ L+   ++ DI DTAGQE 
Sbjct: 6   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQED 64
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEK 130
           Y ++   Y+R        + IT M+SF     + +++ R + + N+   LV NK DLE+K
Sbjct: 65  YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 124
Query: 131 RKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
           R+V  EE +  A +  ++++ETSAK+  NV+++F+++
Sbjct: 125 RQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDL 161

>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras- Binding-Domain Of C-Raf1 Kinase (Rafrbd) Length = 167

Iteration: 1
 Score = 92.4 bits (228), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 56/158 (35%), Positives = 93/158 (58%), Gaps = 3/158 (1%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           KLV+LG  G GK++L ++FV+G F +  + TI  ++  QV  ++      +I DTAG E+
Sbjct: 5   KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQV-EVDCQQCMLEILDTAGTEQ 63
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEK 130
           + ++  +Y +        Y IT+  +F   +   +++ R +   ++ M LV NK DLE++
Sbjct: 64  FTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDE 123
Query: 131 RKVKNEEGE-LYAQENGLSFLETSAKSAHNVNELFYEI 167
           R V  E+G+ L  Q    +FLE+SAKS  NVNE+FY++
Sbjct: 124 RVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDL 161

>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp Length = 217

Iteration: 1
 Score = 92.0 bits (227), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 83/163 (50%), Gaps = 15/163 (9%)
Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNE----------VTIK 60
           +KL+ LGD G GKT+ + R+   +F     +T+G  F  + +  N             + 
Sbjct: 26  IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVH 85
Query: 61  FDIWDTAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQG---NPNLI 117
             +WDTAGQER+ SL   ++R        +D+TS  SF   + W+ +LQ      NP+++
Sbjct: 86  LQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV 145
Query: 118 MFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNV 160
             L+ NK DL ++R+V   +    A + G+ + ETSA +  NV
Sbjct: 146 --LIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNV 186

>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp) Length = 219

Iteration: 1
 Score = 90.9 bits (224), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 57/153 (37%), Positives = 84/153 (54%), Gaps = 3/153 (1%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           KLVL+GD GTGKT+ V R + G+F     +TIG          N   IKFD+WDTAG E+
Sbjct: 14  KLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLEK 73
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           +  L   YY         +D+TS  +++    W ++L R    N+ + L  NKVD++E R
Sbjct: 74  FGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-NIPIVLCGNKVDVKE-R 131
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELF 164
           KVK +    + ++N L + + SAKS +N  + F
Sbjct: 132 KVKAKTITFHRKKN-LQYYDISAKSNYNFEKPF 163

>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex Length = 172

Iteration: 1
 Score = 90.5 bits (223), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 57/153 (37%), Positives = 84/153 (54%), Gaps = 3/153 (1%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           KLVL+GD GTGKT+ V R + G+F     +TIG          N   IKFD+WDTAG E+
Sbjct: 7   KLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLEK 66
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           +  L   YY         +D+TS  +++    W ++L R    N+ + L  NKVD++E R
Sbjct: 67  FGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-NIPIVLCGNKVDVKE-R 124
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELF 164
           KVK +    + ++N L + + SAKS +N  + F
Sbjct: 125 KVKAKTITFHRKKN-LQYYDISAKSNYNFEKPF 156

>pdb|3ICQ|B Chain B, Karyopherin Nuclear State Length = 171

Iteration: 1
 Score = 90.5 bits (223), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 57/153 (37%), Positives = 84/153 (54%), Gaps = 3/153 (1%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           KLVL+GD GTGKT+ V R + G+F     +TIG          N   IKFD+WDTAG E+
Sbjct: 6   KLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLEK 65
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           +  L   YY         +D+TS  +++    W ++L R    N+ + L  NKVD++E R
Sbjct: 66  FGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-NIPIVLCGNKVDVKE-R 123
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELF 164
           KVK +    + ++N L + + SAKS +N  + F
Sbjct: 124 KVKAKTITFHRKKN-LQYYDISAKSNYNFEKPF 155

>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In Complex With The Active Rala Length = 175

Iteration: 1
 Score = 90.1 bits (222), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 96/157 (61%), Gaps = 2/157 (1%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K++++G  G GK++L L+F+  +F +  E T   ++  +V+ L+   ++ DI DTAG E 
Sbjct: 8   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGLED 66
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEK 130
           Y ++   Y+R        + IT M+SF     + +++ R + + N+   LV NK DLE+K
Sbjct: 67  YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 126
Query: 131 RKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
           R+V  EE +  A++  ++++ETSAK+  NV+++F+++
Sbjct: 127 RQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDL 163

>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a Length = 195

Iteration: 1
 Score = 90.1 bits (222), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 54/165 (32%), Positives = 86/165 (52%), Gaps = 15/165 (9%)
Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQ--VLSLNEVT--------IK 60
           +K + LGD G GKTS++ ++  G+F     +T+G  F  +  V   N           I 
Sbjct: 12  IKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIH 71
Query: 61  FDIWDTAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQG---NPNLI 117
             +WDTAG ER+ SL   ++R        +D+T+  SF   + W+ +LQ      NP+++
Sbjct: 72  LQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIV 131
Query: 118 MFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNE 162
             L  NK DLE++R VK EE    A++ G+ + ETSA +  N++ 
Sbjct: 132 --LCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISH 174

>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 200

Iteration: 1
 Score = 88.6 bits (218), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 83/163 (50%), Gaps = 15/163 (9%)
Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVL----------SLNEVTIK 60
           +KL+ LGD G GKT+ + R+   +F     +T+G  F  + +          S     + 
Sbjct: 12  IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVH 71
Query: 61  FDIWDTAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQG---NPNLI 117
             +WDTAG ER+ SL   ++R        +D+TS  SF   + W+ +LQ      NP+++
Sbjct: 72  LQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV 131
Query: 118 MFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNV 160
             L+ NK DL ++R+V   +    A++ G+ + ETSA +  NV
Sbjct: 132 --LIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNV 172

>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 220

Iteration: 1
 Score = 88.6 bits (218), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 84/165 (50%), Gaps = 19/165 (11%)
Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQF---------FDFQESTIGAAFFTQVL---SLNEVT 58
           +KL+ LGD G GKT+ + R+   +F          DF+E  +   + TQ     S     
Sbjct: 12  IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRV--VYDTQGADGASGKAFK 69
Query: 59  IKFDIWDTAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQG---NPN 115
           +   +WDTAG ER+ SL   ++R        +D+TS  SF   + W+ +LQ      NP+
Sbjct: 70  VHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPD 129
Query: 116 LIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNV 160
           ++  L+ NK DL ++R+V   +    A++ G+ + ETSA +  NV
Sbjct: 130 IV--LIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNV 172

>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras And Inhibit Sos-Mediated Nucleotide Exchange Activity Length = 189

Iteration: 1
 Score = 87.8 bits (216), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 52/157 (33%), Positives = 87/157 (55%), Gaps = 3/157 (1%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           KLV++G  G GK++L ++ ++  F D  + TI  ++  QV+   E T   DI DTAGQE 
Sbjct: 6   KLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGQEE 64
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEK 130
           Y ++   Y R        + I +  SFE    + ++++R + + ++ M LV NK DL   
Sbjct: 65  YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL-PS 123
Query: 131 RKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
           R V  ++ +  A+  G+ F+ETSAK+   V++ FY +
Sbjct: 124 RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTL 160

>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive (Gdp-3'p- Bound) Form Length = 178

Iteration: 1
 Score = 87.8 bits (216), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 55/162 (33%), Positives = 83/162 (51%), Gaps = 4/162 (2%)
Query: 10  QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSL-NEVTIKFDIWDTAG 68
           Q+K+V+LGD  +GKTSL   F +  F    + TIG  FF + ++L   + +   IWD  G
Sbjct: 6   QLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGG 65
Query: 69  QERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKW---VQELQRQGNPNLIMFLVANKV 125
           Q     +   Y  G       YDIT+  SFE  + W   V+++  +     ++ LV NK+
Sbjct: 66  QTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKI 125
Query: 126 DLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
           DLE  R +K E+   + QENG S    SAK+  +V   F ++
Sbjct: 126 DLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKV 167

>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Hexagonal Space Group Length = 195

Iteration: 1
 Score = 87.8 bits (216), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 84/163 (51%), Gaps = 15/163 (9%)
Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVL----------SLNEVTIK 60
           +KL+ LGD G GKT+ + R+   +F     +T+G  F  + +          S     + 
Sbjct: 12  IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVH 71
Query: 61  FDIWDTAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQG---NPNLI 117
             +WDTAG ER+ SL   ++R        +D+TS  SF   + W  +LQ      NP+++
Sbjct: 72  LQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPDIV 131
Query: 118 MFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNV 160
             L+ NK DL ++R+V   +    A++ G+ + ETSA +  NV
Sbjct: 132 --LIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNV 172

>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex Length = 178

Iteration: 1
 Score = 87.8 bits (216), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 93/158 (58%), Gaps = 3/158 (1%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K++++G  G GK++L L+F+  +F +  E T   ++  +V+ L+   ++ DI DTAG E 
Sbjct: 9   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGLED 67
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQR--QGNPNLIMFLVANKVDLEE 129
           Y ++   Y+R        + IT  +SF    ++ +++ R       + + +V NK DLEE
Sbjct: 68  YAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEE 127
Query: 130 KRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
           +R+V  EE    A+E G+ ++ETSAK+  NV+++F+++
Sbjct: 128 RRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDL 165

>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed With The Slp Homology Domain Of Slac2-AMELANOPHILIN Length = 203

Iteration: 1
 Score = 87.8 bits (216), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 84/163 (51%), Gaps = 15/163 (9%)
Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVL----------SLNEVTIK 60
           +KL+ LGD G GKT+ + R+   +F     +T+G  F  + +          S     + 
Sbjct: 12  IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVH 71
Query: 61  FDIWDTAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQG---NPNLI 117
             +WDTAG ER+ SL   ++R        +D+TS  SF   + W  +LQ      NP+++
Sbjct: 72  LQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPDIV 131
Query: 118 MFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNV 160
             L+ NK DL ++R+V   +    A++ G+ + ETSA +  NV
Sbjct: 132 --LIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNV 172

>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb In Its Active Conformation: Significance For Effector Protein Binding Length = 174

Iteration: 1
 Score = 87.4 bits (215), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 93/158 (58%), Gaps = 3/158 (1%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K++++G  G GK++L L+F+  +F +  E T   ++  +V+ L+   ++ DI DTAG E 
Sbjct: 5   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGLED 63
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQR--QGNPNLIMFLVANKVDLEE 129
           Y ++   Y+R        + IT  +SF    ++ +++ R       + + +V NK DLEE
Sbjct: 64  YAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEE 123
Query: 130 KRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
           +R+V  EE    A+E G+ ++ETSAK+  NV+++F+++
Sbjct: 124 RRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDL 161

>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 86.7 bits (213), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 88/157 (56%), Gaps = 3/157 (1%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           KLV++G  G GK++L ++ ++  F D  + TI  ++  QV+   E T   DI DTAGQE 
Sbjct: 5   KLVVVGARGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGQEE 63
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEK 130
           Y ++   Y R        + I +  SFE   ++ ++++R + + ++ M LV NK DL   
Sbjct: 64  YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AA 122
Query: 131 RKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
           R V++ + +  A+  G+ ++ETSAK+   V + FY +
Sbjct: 123 RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159

>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 86.7 bits (213), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 88/157 (56%), Gaps = 3/157 (1%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           KLV++G  G GK++L ++ ++  F D  + TI  ++  QV+   E T   DI DTAGQE 
Sbjct: 5   KLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGQEE 63
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEK 130
           Y ++   Y R        + I +  SFE   ++ ++++R + + ++ M LV NK DL   
Sbjct: 64  YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AA 122
Query: 131 RKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
           R V++ + +  A+  G+ ++ETSAK+   V + FY +
Sbjct: 123 RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159

>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 86.7 bits (213), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 52/157 (33%), Positives = 87/157 (55%), Gaps = 3/157 (1%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           KLV++G  G GK++L ++ ++  F D  + TI  ++  QV+   E T   DI DTAGQE 
Sbjct: 6   KLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGQEE 64
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEK 130
           Y ++   Y R        + I +  SFE    + ++++R + + ++ M LV NK DL   
Sbjct: 65  YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDL-PS 123
Query: 131 RKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
           R V  ++ +  A+  G+ F+ETSAK+   V++ FY +
Sbjct: 124 RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTL 160

>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And Magnesium Length = 166

Iteration: 1
 Score = 86.3 bits (212), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 88/157 (56%), Gaps = 3/157 (1%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           KLV++G  G GK++L ++ ++  F D  + TI  ++  QV+   E T   DI DTAGQE 
Sbjct: 5   KLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGQEE 63
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEK 130
           Y ++   Y R        + I +  SFE   ++ ++++R + + ++ M LV NK DL   
Sbjct: 64  YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AG 122
Query: 131 RKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
           R V++ + +  A+  G+ ++ETSAK+   V + FY +
Sbjct: 123 RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159

>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A Transforming And A Nontransforming Gly-12 Mutant Of P21-H-Ras Length = 166

Iteration: 1
 Score = 86.3 bits (212), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 51/155 (32%), Positives = 87/155 (56%), Gaps = 3/155 (1%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           KLV++G  G GK++L ++ ++  F D  + TI  ++  QV+   E T   DI DTAGQE 
Sbjct: 5   KLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGQEE 63
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEK 130
           Y ++   Y R        + I +  SFE   ++ ++++R + + ++ M LV NK DL   
Sbjct: 64  YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AA 122
Query: 131 RKVKNEEGELYAQENGLSFLETSAKSAHNVNELFY 165
           R V++ + +  A+  G+ ++ETSAK+   V + FY
Sbjct: 123 RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFY 157

>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The Effector Domain Of The Protein Kinase PknPRK1 Length = 182

Iteration: 1
 Score = 85.9 bits (211), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 58/170 (34%), Positives = 85/170 (50%), Gaps = 16/170 (9%)
Query: 9   IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAG 68
           I+ KLV++GD+  GKT L++ F K QF +    T+   +   +  ++   ++  +WDTAG
Sbjct: 5   IRKKLVIVGDVACGKTCLLIVFSKDQFPEVYVPTVFENYVADI-EVDGKQVELALWDTAG 63
Query: 69  QERYHSLAPMYYRGXXXXXXXYDITSMDSFER-AKKWVQELQRQGNPNLIMFLVANKVDL 127
           QE Y  L P+ Y         + I S DS E   +KW  E+ +   PN+ + LV NK DL
Sbjct: 64  QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDL 122
Query: 128 ---EEKRK---------VKNEEGELYAQENG-LSFLETSAKSAHNVNELF 164
              E  R+         VK EEG   A   G   ++E SAK+   V E+F
Sbjct: 123 RNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 172

>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From Encephalitozoon Cuniculi Bound To Gdp-Mg2+ Length = 218

Iteration: 1
 Score = 85.9 bits (211), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 48/154 (31%), Positives = 80/154 (51%), Gaps = 1/154 (0%)
Query: 7   KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAA-FFTQVLSLNEVTIKFDIWD 65
           + +  K+ L+GD G GKT+ + R + G+F     +T+GA       L      IKF++WD
Sbjct: 8   RELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWD 67
Query: 66  TAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKV 125
           TAGQE+   L  +YY G       +D+TS  + +   +WV+E Q        + + ANK+
Sbjct: 68  TAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKI 127
Query: 126 DLEEKRKVKNEEGELYAQENGLSFLETSAKSAHN 159
           D++ ++K+  +      +     + E SAK+AHN
Sbjct: 128 DIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHN 161

>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex Length = 201

Iteration: 1
 Score = 84.3 bits (207), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 55/170 (32%), Positives = 84/170 (49%), Gaps = 16/170 (9%)
Query: 9   IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAG 68
           I+ KLV++GD   GKT L++ F K QF +    T+   +   +  ++   ++  +WDTAG
Sbjct: 24  IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADI-EVDGKQVELALWDTAG 82
Query: 69  QERYHSLAPMYYRGXXXXXXXYDITSMDSFER-AKKWVQELQRQGNPNLIMFLVANKVDL 127
           QE Y  L P+ Y         + I S DS E   +KW  E+ +   PN+ + LV NK DL
Sbjct: 83  QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDL 141
Query: 128 EE------------KRKVKNEEGELYAQE-NGLSFLETSAKSAHNVNELF 164
            +            +  V++EEG   A   +   +LE SAK+   V E+F
Sbjct: 142 RQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF 191

>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex Length = 201

Iteration: 1
 Score = 84.3 bits (207), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 55/170 (32%), Positives = 84/170 (49%), Gaps = 16/170 (9%)
Query: 9   IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAG 68
           I+ KLV++GD   GKT L++ F K QF +    T+   +   +  ++   ++  +WDTAG
Sbjct: 24  IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADI-EVDGKQVELALWDTAG 82
Query: 69  QERYHSLAPMYYRGXXXXXXXYDITSMDSFER-AKKWVQELQRQGNPNLIMFLVANKVDL 127
           QE Y  L P+ Y         + I S DS E   +KW  E+ +   PN+ + LV NK DL
Sbjct: 83  QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFXPNVPIILVGNKKDL 141
Query: 128 EE------------KRKVKNEEGELYAQE-NGLSFLETSAKSAHNVNELF 164
            +            +  V++EEG   A   +   +LE SAK+   V E+F
Sbjct: 142 RQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF 191

>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex Length = 193

Iteration: 1
 Score = 84.3 bits (207), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 58/170 (34%), Positives = 84/170 (49%), Gaps = 16/170 (9%)
Query: 9   IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAG 68
           I+ KLV++GD   GKT L++ F K QF +    T+   +   +  ++   ++  +WDTAG
Sbjct: 4   IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADI-EVDGKQVELALWDTAG 62
Query: 69  QERYHSLAPMYYRGXXXXXXXYDITSMDSFER-AKKWVQELQRQGNPNLIMFLVANKVDL 127
           QE Y  L P+ Y         + I S DS E   +KW  E+ +   PN+ + LV NK DL
Sbjct: 63  QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDL 121
Query: 128 ---EEKRK---------VKNEEGELYAQENG-LSFLETSAKSAHNVNELF 164
              E  R+         VK EEG   A   G   ++E SAK+   V E+F
Sbjct: 122 RNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171

>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa And Rho-Binding Domain Of Human Rocki Length = 183

Iteration: 1
 Score = 84.3 bits (207), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 58/170 (34%), Positives = 84/170 (49%), Gaps = 16/170 (9%)
Query: 9   IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAG 68
           I+ KLV++GD   GKT L++ F K QF +    T+   +   +  ++   ++  +WDTAG
Sbjct: 6   IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADI-EVDGKQVELALWDTAG 64
Query: 69  QERYHSLAPMYYRGXXXXXXXYDITSMDSFER-AKKWVQELQRQGNPNLIMFLVANKVDL 127
           QE Y  L P+ Y         + I S DS E   +KW  E+ +   PN+ + LV NK DL
Sbjct: 65  QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDL 123
Query: 128 ---EEKRK---------VKNEEGELYAQENG-LSFLETSAKSAHNVNELF 164
              E  R+         VK EEG   A   G   ++E SAK+   V E+F
Sbjct: 124 RNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 173

>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex With Rhogdi In Its Active Gppnhp-Bound Form Length = 195

Iteration: 1
 Score = 84.3 bits (207), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 58/170 (34%), Positives = 84/170 (49%), Gaps = 16/170 (9%)
Query: 9   IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAG 68
           I+ KLV++GD   GKT L++ F K QF +    T+   +   +  ++   ++  +WDTAG
Sbjct: 6   IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADI-EVDGKQVELALWDTAG 64
Query: 69  QERYHSLAPMYYRGXXXXXXXYDITSMDSFER-AKKWVQELQRQGNPNLIMFLVANKVDL 127
           QE Y  L P+ Y         + I S DS E   +KW  E+ +   PN+ + LV NK DL
Sbjct: 65  QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDL 123
Query: 128 ---EEKRK---------VKNEEGELYAQENG-LSFLETSAKSAHNVNELF 164
              E  R+         VK EEG   A   G   ++E SAK+   V E+F
Sbjct: 124 RNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 173

>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+ (Complex A) Length = 185

Iteration: 1
 Score = 84.3 bits (207), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 58/170 (34%), Positives = 84/170 (49%), Gaps = 16/170 (9%)
Query: 9   IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAG 68
           I+ KLV++GD   GKT L++ F K QF +    T+   +   +  ++   ++  +WDTAG
Sbjct: 8   IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADI-EVDGKQVELALWDTAG 66
Query: 69  QERYHSLAPMYYRGXXXXXXXYDITSMDSFER-AKKWVQELQRQGNPNLIMFLVANKVDL 127
           QE Y  L P+ Y         + I S DS E   +KW  E+ +   PN+ + LV NK DL
Sbjct: 67  QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDL 125
Query: 128 ---EEKRK---------VKNEEGELYAQENG-LSFLETSAKSAHNVNELF 164
              E  R+         VK EEG   A   G   ++E SAK+   V E+F
Sbjct: 126 RNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 175

>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State Length = 196

Iteration: 1
 Score = 84.3 bits (207), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 60/170 (35%), Positives = 90/170 (52%), Gaps = 10/170 (5%)
Query: 7   KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDT 66
           K+ +VKL + G  G GK++LV+RF+  +F    + T+ + +  Q  ++++  +  +I DT
Sbjct: 25  KSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQA-TIDDEVVSMEILDT 83
Query: 67  AGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERA---KKWVQELQRQGNPNLIMFLVAN 123
           AGQE        + R        YDIT   SFE     K  + E+++  N  LI  LV N
Sbjct: 84  AGQEDTIQREG-HMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLI--LVGN 140
Query: 124 KVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAH-NVNELFYEIGDCTE 172
           K DL+  R+V  EEGE  A E   +F E SA +   N+ E+FYE+  C E
Sbjct: 141 KADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYEL--CRE 188

>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH DOMAINS WITH GTP- Gamma-S Activated Rhoa Length = 182

Iteration: 1
 Score = 84.3 bits (207), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 58/170 (34%), Positives = 84/170 (49%), Gaps = 16/170 (9%)
Query: 9   IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAG 68
           I+ KLV++GD   GKT L++ F K QF +    T+   +   +  ++   ++  +WDTAG
Sbjct: 5   IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADI-EVDGKQVELALWDTAG 63
Query: 69  QERYHSLAPMYYRGXXXXXXXYDITSMDSFER-AKKWVQELQRQGNPNLIMFLVANKVDL 127
           QE Y  L P+ Y         + I S DS E   +KW  E+ +   PN+ + LV NK DL
Sbjct: 64  QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDL 122
Query: 128 ---EEKRK---------VKNEEGELYAQENG-LSFLETSAKSAHNVNELF 164
              E  R+         VK EEG   A   G   ++E SAK+   V E+F
Sbjct: 123 RNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 172

>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-Associated Rhogef In Complex With Rhoa Length = 196

Iteration: 1
 Score = 84.3 bits (207), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 58/170 (34%), Positives = 84/170 (49%), Gaps = 16/170 (9%)
Query: 9   IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAG 68
           I+ KLV++GD   GKT L++ F K QF +    T+   +   +  ++   ++  +WDTAG
Sbjct: 7   IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADI-EVDGKQVELALWDTAG 65
Query: 69  QERYHSLAPMYYRGXXXXXXXYDITSMDSFER-AKKWVQELQRQGNPNLIMFLVANKVDL 127
           QE Y  L P+ Y         + I S DS E   +KW  E+ +   PN+ + LV NK DL
Sbjct: 66  QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDL 124
Query: 128 ---EEKRK---------VKNEEGELYAQENG-LSFLETSAKSAHNVNELF 164
              E  R+         VK EEG   A   G   ++E SAK+   V E+F
Sbjct: 125 RNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 174

>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology Domains Of Dbs In Complex With Rhoa Length = 192

Iteration: 1
 Score = 84.0 bits (206), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 58/170 (34%), Positives = 84/170 (49%), Gaps = 16/170 (9%)
Query: 9   IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAG 68
           I+ KLV++GD   GKT L++ F K QF +    T+   +   +  ++   ++  +WDTAG
Sbjct: 6   IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADI-EVDGKQVELALWDTAG 64
Query: 69  QERYHSLAPMYYRGXXXXXXXYDITSMDSFER-AKKWVQELQRQGNPNLIMFLVANKVDL 127
           QE Y  L P+ Y         + I S DS E   +KW  E+ +   PN+ + LV NK DL
Sbjct: 65  QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDL 123
Query: 128 ---EEKRK---------VKNEEGELYAQENG-LSFLETSAKSAHNVNELF 164
              E  R+         VK EEG   A   G   ++E SAK+   V E+F
Sbjct: 124 RNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 173

>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And Inorganic Phosphate Length = 172

Iteration: 1
 Score = 83.2 bits (204), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 55/160 (34%), Positives = 85/160 (53%), Gaps = 7/160 (4%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAA--FFTQVLSLNEVTIKFDIWDTAGQ 69
           ++ + G  G GK+SLVLRFVKG    F+ES I      + QV+S ++      I DT G 
Sbjct: 5   RVAVFGAGGVGKSSLVLRFVKG---TFRESYIPTVEDTYRQVISCDKSICTLQITDTTGS 61
Query: 70  ERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQEL-QRQGN-PNLIMFLVANKVDL 127
            ++ ++  +           Y ITS  S E  K   +++ + +G+  ++ + LV NK D 
Sbjct: 62  HQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDE 121
Query: 128 EEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
              R+V++ E E  A+    +F+ETSAK  HNV ELF E+
Sbjct: 122 SPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQEL 161

>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State Length = 207

Iteration: 1
 Score = 82.0 bits (201), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 52/170 (30%), Positives = 81/170 (47%), Gaps = 16/170 (9%)
Query: 9   IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAG 68
           I+ KLV++GD   GKT L++ F K +F +    T+   +   +  ++   ++  +WDTAG
Sbjct: 24  IRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADI-EVDGKQVELALWDTAG 82
Query: 69  QERYHSLAPMYYRGXXXXXXXYDITSMDSFER-AKKWVQELQRQGNPNLIMFLVANKVDL 127
           QE Y  L P+ Y         + + S DS E   +KWV E+ +   PN+ + LVANK DL
Sbjct: 83  QEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEV-KHFCPNVPIILVANKKDL 141
Query: 128 EEKRKVKNEEGELYAQE-------------NGLSFLETSAKSAHNVNELF 164
                V+ E   +  +                  +LE SAK+   V E+F
Sbjct: 142 RSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVF 191

>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc- Gmppnp Length = 193

Iteration: 1
 Score = 81.3 bits (199), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 54/170 (31%), Positives = 83/170 (48%), Gaps = 16/170 (9%)
Query: 9   IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAG 68
           I+ KLV++GD   GKT L++   K QF +    T+   +   +  ++   ++  +WDTAG
Sbjct: 4   IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYIADI-EVDGKQVELALWDTAG 62
Query: 69  QERYHSLAPMYYRGXXXXXXXYDITSMDSFER-AKKWVQELQRQGNPNLIMFLVANKVDL 127
           QE Y  L P+ Y         + I S DS E   +KW  E+ +   PN+ + LV NK DL
Sbjct: 63  QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDL 121
Query: 128 EE------------KRKVKNEEGELYAQE-NGLSFLETSAKSAHNVNELF 164
            +            +  V++EEG   A   +   +LE SAK+   V E+F
Sbjct: 122 RQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF 171

>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177

Iteration: 1
 Score = 80.9 bits (198), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 57/170 (33%), Positives = 83/170 (48%), Gaps = 16/170 (9%)
Query: 9   IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAG 68
           I+ KLV++GD   GKT L++   K QF +    T+   +   +  ++   ++  +WDTAG
Sbjct: 2   IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADI-EVDGKQVELALWDTAG 60
Query: 69  QERYHSLAPMYYRGXXXXXXXYDITSMDSFER-AKKWVQELQRQGNPNLIMFLVANKVDL 127
           QE Y  L P+ Y         + I S DS E   +KW  E+ +   PN+ + LV NK DL
Sbjct: 61  QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDL 119
Query: 128 ---EEKRK---------VKNEEGELYAQENG-LSFLETSAKSAHNVNELF 164
              E  R+         VK EEG   A   G   ++E SAK+   V E+F
Sbjct: 120 RNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 169

>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap Length = 193

Iteration: 1
 Score = 80.9 bits (198), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 57/170 (33%), Positives = 83/170 (48%), Gaps = 16/170 (9%)
Query: 9   IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAG 68
           I+ KLV++GD   GKT L++   K QF +    T+   +   +  ++   ++  +WDTAG
Sbjct: 4   IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADI-EVDGKQVELALWDTAG 62
Query: 69  QERYHSLAPMYYRGXXXXXXXYDITSMDSFER-AKKWVQELQRQGNPNLIMFLVANKVDL 127
           QE Y  L P+ Y         + I S DS E   +KW  E+ +   PN+ + LV NK DL
Sbjct: 63  QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDL 121
Query: 128 ---EEKRK---------VKNEEGELYAQENG-LSFLETSAKSAHNVNELF 164
              E  R+         VK EEG   A   G   ++E SAK+   V E+F
Sbjct: 122 RNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171

>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Length = 190

Iteration: 1
 Score = 80.9 bits (198), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 57/170 (33%), Positives = 83/170 (48%), Gaps = 16/170 (9%)
Query: 9   IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAG 68
           I+ KLV++GD   GKT L++   K QF +    T+   +   +  ++   ++  +WDTAG
Sbjct: 4   IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADI-EVDGKQVELALWDTAG 62
Query: 69  QERYHSLAPMYYRGXXXXXXXYDITSMDSFER-AKKWVQELQRQGNPNLIMFLVANKVDL 127
           QE Y  L P+ Y         + I S DS E   +KW  E+ +   PN+ + LV NK DL
Sbjct: 63  QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDL 121
Query: 128 ---EEKRK---------VKNEEGELYAQENG-LSFLETSAKSAHNVNELF 164
              E  R+         VK EEG   A   G   ++E SAK+   V E+F
Sbjct: 122 RNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171

>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH Fragment Of Pdzrhogef Length = 178

Iteration: 1
 Score = 80.9 bits (198), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 57/170 (33%), Positives = 83/170 (48%), Gaps = 16/170 (9%)
Query: 9   IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAG 68
           I+ KLV++GD   GKT L++   K QF +    T+   +   +  ++   ++  +WDTAG
Sbjct: 2   IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADI-EVDGKQVELALWDTAG 60
Query: 69  QERYHSLAPMYYRGXXXXXXXYDITSMDSFER-AKKWVQELQRQGNPNLIMFLVANKVDL 127
           QE Y  L P+ Y         + I S DS E   +KW  E+ +   PN+ + LV NK DL
Sbjct: 61  QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDL 119
Query: 128 ---EEKRK---------VKNEEGELYAQENG-LSFLETSAKSAHNVNELF 164
              E  R+         VK EEG   A   G   ++E SAK+   V E+F
Sbjct: 120 RNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 169

>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap Domain Of Arhgap20 Length = 180

Iteration: 1
 Score = 80.5 bits (197), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 57/170 (33%), Positives = 83/170 (48%), Gaps = 16/170 (9%)
Query: 9   IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAG 68
           I+ KLV++GD   GKT L++   K QF +    T+   +   +  ++   ++  +WDTAG
Sbjct: 4   IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADI-EVDGKQVELALWDTAG 62
Query: 69  QERYHSLAPMYYRGXXXXXXXYDITSMDSFER-AKKWVQELQRQGNPNLIMFLVANKVDL 127
           QE Y  L P+ Y         + I S DS E   +KW  E+ +   PN+ + LV NK DL
Sbjct: 63  QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDL 121
Query: 128 ---EEKRK---------VKNEEGELYAQENG-LSFLETSAKSAHNVNELF 164
              E  R+         VK EEG   A   G   ++E SAK+   V E+F
Sbjct: 122 RNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171

>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From Saccharomyces Cerevisiae Length = 188

Iteration: 1
 Score = 80.5 bits (197), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 57/180 (31%), Positives = 90/180 (50%), Gaps = 20/180 (11%)
Query: 1   MARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIK 60
           M++    +I+ KLV++GD   GKT L++   KGQF +    T+   +   V  ++   ++
Sbjct: 1   MSQQVGNSIRRKLVIVGDGACGKTCLLIVNSKGQFPEVYVPTVFENYVADV-EVDGRRVE 59
Query: 61  FDIWDTAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQR--QGNPNLI 117
             +WDTAGQE Y  L P+ Y         + I   DS E  + KW+ E+    QG P   
Sbjct: 60  LALWDTAGQEDYDRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEVLHFCQGVP--- 116
Query: 118 MFLVANKVDL------------EEKRKVKNEEGELYAQENGLS-FLETSAKSAHNVNELF 164
           + LV  KVDL            E ++ V ++EG+  A + G + + E SAK+ + V E+F
Sbjct: 117 IILVGCKVDLRNDPQTIEQLRQEGQQPVTSQEGQSVADQIGATGYYECSAKTGYGVREVF 176

>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9: The First Ras Superfamily Gtpase From The Plant Kingdom Length = 212

Iteration: 1
 Score = 80.1 bits (196), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 50/164 (30%), Positives = 83/164 (50%), Gaps = 12/164 (7%)
Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +K V +GD   GKT +++ +   +F      T+   F   V +++   +   +WDTAGQE
Sbjct: 10  IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANV-AVDGQIVNLGLWDTAGQE 68
Query: 71  RYHSLAPMYYRGXXXXXXXYDITSMDSFERA-KKWVQELQRQGNPNLIMFLVANKVDLEE 129
            Y  L P+ YRG       + + S  S+E   KKW+ EL+R   PN+ + LV  K+DL +
Sbjct: 69  DYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRD 127
Query: 130 KRK--------VKNEEG-ELYAQENGLSFLETSAKSAHNVNELF 164
            +         + + +G EL  Q    +++E S+K+  NV  +F
Sbjct: 128 DKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVF 171

>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With Gdp Length = 180

Iteration: 1
 Score = 80.1 bits (196), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 54/170 (31%), Positives = 81/170 (47%), Gaps = 16/170 (9%)
Query: 9   IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAG 68
           I+ KLV++GD+  GKT L++ F K QF      T+   +   +  ++   ++  +WDTAG
Sbjct: 4   IRKKLVIVGDVACGKTCLLIVFSKDQFPAVYVPTVFENYVADI-EVDGKQVELALWDTAG 62
Query: 69  QERYHSLAPMYYRGXXXXXXXYDITSMDSFER-AKKWVQELQRQGNPNLIMFLVANKVDL 127
           QE Y    P+ Y         + I S DS E   +KW  E+ +   PN+ + LV NK DL
Sbjct: 63  QEDYDRARPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDL 121
Query: 128 E------------EKRKVKNEEGELYAQENG-LSFLETSAKSAHNVNELF 164
                        ++  VK  EG   A   G   ++E SAK+   V E+F
Sbjct: 122 RNDEHTARELAKMKQEPVKPAEGRDMANRIGAFGYMECSAKTKDGVREVF 171

>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5 Length = 182

Iteration: 1
 Score = 79.7 bits (195), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 82/166 (49%), Gaps = 14/166 (8%)
Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +K V +GD   GKT L++ +    F      T+   F   V+ +N  T+   +WDTAGQE
Sbjct: 9   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGATVNLGLWDTAGQE 67
Query: 71  RYHSLAPMYYRGXXXXXXXYDITSMDSFER-AKKWVQELQRQGNPNLIMFLVANKVDLEE 129
            Y+ L P+ YRG       + + S  S+E  +KKW+ EL+    P + + LV  K+DL +
Sbjct: 68  DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIVLVGTKLDLRD 126
Query: 130 KRK----------VKNEEG-ELYAQENGLSFLETSAKSAHNVNELF 164
            ++          +   +G EL       +++E S+KS  NV  +F
Sbjct: 127 DKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVF 172

>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound Forms Length = 167

Iteration: 1
 Score = 79.3 bits (194), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 53/157 (33%), Positives = 80/157 (50%), Gaps = 2/157 (1%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K+ +LG    GK+SL ++FV+GQF D  + TI   F T+++++N       + DTAGQ+ 
Sbjct: 6   KIAILGYRSVGKSSLTIQFVEGQFVDSADPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 64
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQEL-QRQGNPNLIMFLVANKVDLEEK 130
           Y      Y          Y +TS+ SFE  K    +L    G   + + LV NK DL  +
Sbjct: 65  YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHME 124
Query: 131 RKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
           R +  EEG+  A+    +FLE+SAK      ++F  I
Sbjct: 125 RVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRI 161

>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex With Pde6d Length = 181

Iteration: 1
 Score = 79.3 bits (194), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 53/157 (33%), Positives = 80/157 (50%), Gaps = 2/157 (1%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K+ +LG    GK+SL ++FV+GQF D  + TI   F T+++++N       + DTAGQ+ 
Sbjct: 8   KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 66
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQEL-QRQGNPNLIMFLVANKVDLEEK 130
           Y      Y          Y +TS+ SFE  K    +L    G   + + LV NK DL  +
Sbjct: 67  YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHME 126
Query: 131 RKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
           R +  EEG+  A+    +FLE+SAK      ++F  I
Sbjct: 127 RVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRI 163

>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp Length = 169

Iteration: 1
 Score = 79.0 bits (193), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 53/157 (33%), Positives = 80/157 (50%), Gaps = 2/157 (1%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K+ +LG    GK+SL ++FV+GQF D  + TI   F T+++++N       + DTAGQ+ 
Sbjct: 3   KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 61
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQEL-QRQGNPNLIMFLVANKVDLEEK 130
           Y      Y          Y +TS+ SFE  K    +L    G   + + LV NK DL  +
Sbjct: 62  YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHME 121
Query: 131 RKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
           R +  EEG+  A+    +FLE+SAK      ++F  I
Sbjct: 122 RVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRI 158

>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp Length = 177

Iteration: 1
 Score = 79.0 bits (193), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 53/157 (33%), Positives = 80/157 (50%), Gaps = 2/157 (1%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K+ +LG    GK+SL ++FV+GQF D  + TI   F T+++++N       + DTAGQ+ 
Sbjct: 8   KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 66
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQEL-QRQGNPNLIMFLVANKVDLEEK 130
           Y      Y          Y +TS+ SFE  K    +L    G   + + LV NK DL  +
Sbjct: 67  YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHME 126
Query: 131 RKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
           R +  EEG+  A+    +FLE+SAK      ++F  I
Sbjct: 127 RVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRI 163

>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex Length = 180

Iteration: 1
 Score = 79.0 bits (193), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 83/166 (50%), Gaps = 14/166 (8%)
Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +K V +GD   GKT +++ +    F      T+   F   V+ ++  T+   +WDTAGQE
Sbjct: 7   IKCVTVGDGAVGKTCMLISYTGNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQE 65
Query: 71  RYHSLAPMYYRGXXXXXXXYDITSMDSFERA-KKWVQELQRQGNPNLIMFLVANKVDL-E 128
            Y+ L P+ YRG       + + S  S+E   KKW+ EL+    P + + LV  K+DL +
Sbjct: 66  DYNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPELKHYA-PGIPIVLVGTKLDLRD 124
Query: 129 EKRKVKNEEG----------ELYAQENGLSFLETSAKSAHNVNELF 164
           +K+ +K+  G          EL      + +LE S+K+  NV  +F
Sbjct: 125 DKQFLKDHPGAASITTAQGEELRKMIGAVRYLECSSKTQQNVKAVF 170

>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1 Length = 201

Iteration: 1
 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 47/145 (32%), Positives = 81/145 (55%), Gaps = 2/145 (1%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K+V+LG    GKTSL  +FV+G+F +  + T+   + +++++L +      + DTAGQ+ 
Sbjct: 26  KVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDE 84
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEK 130
           Y  L   +  G       Y +TS+ SF+  +   Q+L    G   + + LV NK DL  +
Sbjct: 85  YSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPE 144
Query: 131 RKVKNEEGELYAQENGLSFLETSAK 155
           R+V+  EG+  A+  G +F+E+SA+
Sbjct: 145 REVQAVEGKKLAESWGATFMESSAR 169

>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8 Length = 180

Iteration: 1
 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 80/166 (48%), Gaps = 14/166 (8%)
Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +K V +GD   GKT +++ +    F      T+   F   V+ ++  T+   +WDTAGQE
Sbjct: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGNTVNLGLWDTAGQE 65
Query: 71  RYHSLAPMYYRGXXXXXXXYDITSMDSFER-AKKWVQELQRQGNPNLIMFLVANKVDLEE 129
            Y+ L P+ YRG       + + S  S+E  AKKW+ EL R   P + + LV  K+DL +
Sbjct: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPEL-RHYAPGVPIILVGTKLDLRD 124
Query: 130 KRK-----------VKNEEGELYAQENGLSFLETSAKSAHNVNELF 164
            ++             N+  EL        ++E S+K+  NV  +F
Sbjct: 125 DKQFFIDHPGAVPITTNQGEELKKLIGSPIYIECSSKTQQNVKAVF 170

>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa Mutant (Q63l) Length = 184

Iteration: 1
 Score = 77.8 bits (190), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 56/170 (32%), Positives = 82/170 (48%), Gaps = 16/170 (9%)
Query: 9   IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAG 68
           I+ KLV++GD   GKT L++   K QF +    T+   +   +  ++   ++  +WDTAG
Sbjct: 7   IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADI-EVDGKQVELALWDTAG 65
Query: 69  QERYHSLAPMYYRGXXXXXXXYDITSMDSFER-AKKWVQELQRQGNPNLIMFLVANKVDL 127
            E Y  L P+ Y         + I S DS E   +KW  E+ +   PN+ + LV NK DL
Sbjct: 66  LEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDL 124
Query: 128 ---EEKRK---------VKNEEGELYAQENG-LSFLETSAKSAHNVNELF 164
              E  R+         VK EEG   A   G   ++E SAK+   V E+F
Sbjct: 125 RNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 174

>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein Rhod Length = 214

Iteration: 1
 Score = 77.4 bits (189), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 85/174 (48%), Gaps = 16/174 (9%)
Query: 10  QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ 69
            VK+VL+GD G GKTSL++ F  G F +    T+   +    L +    +   IWDTAGQ
Sbjct: 34  SVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVN-LQVKGKPVHLHIWDTAGQ 92
Query: 70  ERYHSLAPMYYRGXXXXXXXYDITSMDSFERA-KKWVQELQRQGNPNLIMFLVANKVDLE 128
           + Y  L P++Y         +D+TS +SF+    +W  E+       + + +V  K DL 
Sbjct: 93  DDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCK-KVPIIVVGCKTDLR 151
Query: 129 EKRKVKNE------------EGELYAQENG-LSFLETSAKSAHNVNELFYEIGD 169
           + + + N+             G+  A+  G +++LE SA+   NV+ +F E  +
Sbjct: 152 KDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAAE 205

>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2 (Rras2) In The Gdp Bound State Length = 172

Iteration: 1
 Score = 77.0 bits (188), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 43/146 (29%), Positives = 82/146 (56%), Gaps = 2/146 (1%)
Query: 23  KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 82
           K++L ++F++  F    + TI  ++  Q + +++   + DI DTAGQE + ++   Y R 
Sbjct: 18  KSALTIQFIQSYFVTDYDPTIEDSYTKQCV-IDDRAARLDILDTAGQEEFGAMREQYMRT 76
Query: 83  XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 141
                  + +T   SFE   K+ +++ R +      M L+ NK DL+ +R+V  EEG+  
Sbjct: 77  GEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQL 136
Query: 142 AQENGLSFLETSAKSAHNVNELFYEI 167
           A++  ++++E SAK   NV++ F+E+
Sbjct: 137 ARQLKVTYMEASAKIRMNVDQAFHEL 162

>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State Length = 201

Iteration: 1
 Score = 76.6 bits (187), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 52/170 (30%), Positives = 83/170 (48%), Gaps = 20/170 (11%)
Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAF--FTQVLSLNEVTIKFDIWDTAG 68
           VK VL+GD   GKTSLV+ +       +    I  AF  F+ V+S++   ++  + DTAG
Sbjct: 21  VKCVLVGDGAVGKTSLVVSYTTN---GYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAG 77
Query: 69  QERYHSLAPMYYRGXXXXXXXYDITSMDSFER-AKKWVQELQRQGNPNLIMFLVANKVDL 127
           Q+ +  L P+ Y         + + S  SF+  ++KWV E+ R   P   + LV  + DL
Sbjct: 78  QDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEI-RCHCPKAPIILVGTQSDL 136
Query: 128 EE------------KRKVKNEEGELYAQE-NGLSFLETSAKSAHNVNELF 164
            E            ++ V  E  +L A+E    S++E SA +  N+ E+F
Sbjct: 137 REDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVF 186

>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By Isoleucine Length = 166

Iteration: 1
 Score = 75.5 bits (184), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 44/144 (30%), Positives = 80/144 (55%), Gaps = 3/144 (2%)
Query: 23  KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 82
           K++L ++ ++  F D  + TI  ++  QV+   E+ +  DI DTAGQE Y ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGEICL-LDILDTAGQEEYSAMRDQYMRT 74
Query: 83  XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 141
                  + I +  SFE   ++ ++++R + + ++ M LV NK DL   R V++ + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 142 AQENGLSFLETSAKSAHNVNELFY 165
           A+  G+ ++ETSAK+   V + FY
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFY 157

>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 189

Iteration: 1
 Score = 75.1 bits (183), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 80/146 (54%), Gaps = 3/146 (2%)
Query: 23  KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 82
           K++L ++ ++  F D  + TI  ++  QV+   E  +  DI DTAGQE Y ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCL-LDILDTAGQEEYSAMRDQYMRT 74
Query: 83  XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 141
                  + I +  SFE   ++ ++++R + + ++ M LV NK DL   R V++ + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 142 AQENGLSFLETSAKSAHNVNELFYEI 167
           A+  G+ ++ETSAK+   V + FY +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTL 159

>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 74.7 bits (182), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 45/144 (31%), Positives = 78/144 (54%), Gaps = 3/144 (2%)
Query: 23  KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 82
           K++L ++ ++  F D  + TI  ++  QV+   E  +  DI DTAGQE Y ++   Y R 
Sbjct: 17  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCL-LDILDTAGQEEYSAMRDQYMRT 75
Query: 83  XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 141
                  + I +  SFE    + ++++R + + ++ M LV NK DL   R V  ++ +  
Sbjct: 76  GEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDL-PSRTVDTKQAQDL 134
Query: 142 AQENGLSFLETSAKSAHNVNELFY 165
           A+  G+ F+ETSAK+   V++ FY
Sbjct: 135 ARSYGIPFIETSAKTRQGVDDAFY 158

>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 74.7 bits (182), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 45/144 (31%), Positives = 78/144 (54%), Gaps = 3/144 (2%)
Query: 23  KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 82
           K++L ++ ++  F D  + TI  ++  QV+   E  +  DI DTAGQE Y ++   Y R 
Sbjct: 17  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCL-LDILDTAGQEEYSAMRDQYMRT 75
Query: 83  XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 141
                  + I +  SFE    + ++++R + + ++ M LV NK DL   R V  ++ +  
Sbjct: 76  GEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDL-PSRTVDTKQAQDL 134
Query: 142 AQENGLSFLETSAKSAHNVNELFY 165
           A+  G+ F+ETSAK+   V++ FY
Sbjct: 135 ARSYGIPFIETSAKTRQGVDDAFY 158

>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras Length = 173

Iteration: 1
 Score = 74.7 bits (182), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 45/146 (30%), Positives = 80/146 (54%), Gaps = 3/146 (2%)
Query: 23  KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 82
           K++L ++ ++  F D  + TI  ++  QV+   E T   DI DTAGQE Y ++   Y R 
Sbjct: 23  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGQEEYSAMRDQYMRT 81
Query: 83  XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 141
                  + I +  SFE   ++ ++++R + + ++ M LV NK DL   R V++ + +  
Sbjct: 82  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 140
Query: 142 AQENGLSFLETSAKSAHNVNELFYEI 167
           A+  G+ ++ETSAK+   V + FY +
Sbjct: 141 ARSYGIPYIETSAKTRQGVEDAFYTL 166

>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 74.3 bits (181), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 45/144 (31%), Positives = 79/144 (54%), Gaps = 3/144 (2%)
Query: 23  KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 82
           K++L ++ ++  F D  + TI  ++  QV+   E T   DI DTAGQE Y ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEESYRKQVVIDGE-TCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 83  XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 141
                  + I +  SFE   ++ ++++R + + ++ M LV NK DL   R V++ + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 142 AQENGLSFLETSAKSAHNVNELFY 165
           A+  G+ ++ETSAK+   V + FY
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFY 157

>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 74.3 bits (181), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 45/146 (30%), Positives = 80/146 (54%), Gaps = 3/146 (2%)
Query: 23  KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 82
           K++L ++ ++  F D  + TI  ++  QV+   E T   DI DTAGQE Y ++   Y R 
Sbjct: 21  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGQEEYSAMRDQYMRT 79
Query: 83  XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 141
                  + I +  SFE   ++ ++++R + + ++ M LV NK DL   R V++ + +  
Sbjct: 80  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 138
Query: 142 AQENGLSFLETSAKSAHNVNELFYEI 167
           A+  G+ ++ETSAK+   V + FY +
Sbjct: 139 ARSYGIPYIETSAKTRQGVEDAFYTL 164

>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 74.3 bits (181), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 45/146 (30%), Positives = 80/146 (54%), Gaps = 3/146 (2%)
Query: 23  KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 82
           K++L ++ ++  F D  + TI  ++  QV+   E T   DI DTAGQE Y ++   Y R 
Sbjct: 21  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGQEEYSAMRDQYMRT 79
Query: 83  XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 141
                  + I +  SFE   ++ ++++R + + ++ M LV NK DL   R V++ + +  
Sbjct: 80  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 138
Query: 142 AQENGLSFLETSAKSAHNVNELFYEI 167
           A+  G+ ++ETSAK+   V + FY +
Sbjct: 139 ARSYGIPYIETSAKTRQGVEDAFYTL 164

>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With The Ras-interacting Domain Of Ralgds Length = 167

Iteration: 1
 Score = 74.3 bits (181), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 80/146 (54%), Gaps = 3/146 (2%)
Query: 23  KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 82
           K++L ++ ++  F D  + TI  ++  QV+   E  +  DI DTAGQE Y ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDKYDPTIEDSYRKQVVIDGETCL-LDILDTAGQEEYSAMRDQYMRT 74
Query: 83  XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 141
                  + I +  SFE   ++ ++++R + + ++ M LV NK DL   R V++ + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 142 AQENGLSFLETSAKSAHNVNELFYEI 167
           A+  G+ ++ETSAK+   V + FY +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTL 159

>pdb|1WQ1|R Chain R, Ras-Rasgap Complex Length = 166

Iteration: 1
 Score = 74.3 bits (181), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 45/144 (31%), Positives = 79/144 (54%), Gaps = 3/144 (2%)
Query: 23  KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 82
           K++L ++ ++  F D  + TI  ++  QV+   E T   DI DTAGQE Y ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 83  XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 141
                  + I +  SFE   ++ ++++R + + ++ M LV NK DL   R V++ + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 142 AQENGLSFLETSAKSAHNVNELFY 165
           A+  G+ ++ETSAK+   V + FY
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFY 157

>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 74.3 bits (181), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 45/144 (31%), Positives = 79/144 (54%), Gaps = 3/144 (2%)
Query: 23  KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 82
           K++L ++ ++  F D  + TI  ++  QV+   E T   DI DTAGQE Y ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 83  XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 141
                  + I +  SFE   ++ ++++R + + ++ M LV NK DL   R V++ + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 142 AQENGLSFLETSAKSAHNVNELFY 165
           A+  G+ ++ETSAK+   V + FY
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFY 157

>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 171

Iteration: 1
 Score = 74.3 bits (181), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 45/146 (30%), Positives = 80/146 (54%), Gaps = 3/146 (2%)
Query: 23  KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 82
           K++L ++ ++  F D  + TI  ++  QV+   E T   DI DTAGQE Y ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 83  XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 141
                  + I +  SFE   ++ ++++R + + ++ M LV NK DL   R V++ + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 142 AQENGLSFLETSAKSAHNVNELFYEI 167
           A+  G+ ++ETSAK+   V + FY +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTL 159

>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The Catalytic Domains Of Normal Ras Protein And An Oncogenic Mutant Complexed With Gsp Length = 171

Iteration: 1
 Score = 74.3 bits (181), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 45/146 (30%), Positives = 80/146 (54%), Gaps = 3/146 (2%)
Query: 23  KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 82
           K++L ++ ++  F D  + TI  ++  QV+   E T   DI DTAGQE Y ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 83  XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 141
                  + I +  SFE   ++ ++++R + + ++ M LV NK DL   R V++ + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 142 AQENGLSFLETSAKSAHNVNELFYEI 167
           A+  G+ ++ETSAK+   V + FY +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTL 159

>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 73.9 bits (180), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 45/146 (30%), Positives = 80/146 (54%), Gaps = 3/146 (2%)
Query: 23  KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 82
           K++L ++ ++  F D  + TI  ++  QV+   E T   DI DTAGQE Y ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 83  XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 141
                  + I +  SFE   ++ ++++R + + ++ M LV NK DL   R V++ + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 142 AQENGLSFLETSAKSAHNVNELFYEI 167
           A+  G+ ++ETSAK+   V + FY +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTL 159

>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue Length = 187

Iteration: 1
 Score = 73.6 bits (179), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 78/146 (53%), Gaps = 3/146 (2%)
Query: 23  KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 82
           K++L ++ ++  F D  + TI  ++  QV+   E  +  DI DTAG E Y ++   Y R 
Sbjct: 34  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCL-LDILDTAGHEEYSAMRDQYMRT 92
Query: 83  XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 141
                  + I +  SFE    + ++++R + + ++ M LV NK DL   R V  ++ +  
Sbjct: 93  GEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL-PSRTVDTKQAQDL 151
Query: 142 AQENGLSFLETSAKSAHNVNELFYEI 167
           A+  G+ F+ETSAK+   V++ FY +
Sbjct: 152 ARSYGIPFIETSAKTRQGVDDAFYTL 177

>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras P21 In Complex With Gppnhp Length = 166

Iteration: 1
 Score = 73.6 bits (179), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 45/144 (31%), Positives = 79/144 (54%), Gaps = 3/144 (2%)
Query: 23  KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 82
           K++L ++ ++  F D  + TI  ++  QV+   E T   DI DTAGQE Y ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGE-TCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 83  XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 141
                  + I +  SFE   ++ ++++R + + ++ M LV NK DL   R V++ + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDL-AARTVESRQAQDL 133
Query: 142 AQENGLSFLETSAKSAHNVNELFY 165
           A+  G+ ++ETSAK+   V + FY
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFY 157

>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of Ras Length = 166

Iteration: 1
 Score = 73.6 bits (179), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 45/144 (31%), Positives = 78/144 (54%), Gaps = 3/144 (2%)
Query: 23  KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 82
           K +L ++ ++  F D  + TI  ++  QV+   E T   DI DTAGQE Y ++   Y R 
Sbjct: 16  KNALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 83  XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 141
                  + I +  SFE   ++ ++++R + + ++ M LV NK DL   R V++ + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 142 AQENGLSFLETSAKSAHNVNELFY 165
           A+  G+ ++ETSAK+   V + FY
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFY 157

>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF Length = 166

Iteration: 1
 Score = 73.6 bits (179), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 45/144 (31%), Positives = 79/144 (54%), Gaps = 3/144 (2%)
Query: 23  KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 82
           K++L ++ ++  F D  + TI  ++  QV+   E T   DI DTAGQE Y ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGQEEYSAMRDEYMRT 74
Query: 83  XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 141
                  + I +  SFE   ++ ++++R + + ++ M LV NK DL   R V++ + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 142 AQENGLSFLETSAKSAHNVNELFY 165
           A+  G+ ++ETSAK+   V + FY
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFY 157

>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 73.6 bits (179), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 44/144 (30%), Positives = 79/144 (54%), Gaps = 3/144 (2%)
Query: 23  KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 82
           K++L ++ ++  F D  + TI  ++  QV+   E T   DI DTAGQE Y ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 83  XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 141
                  + I +  SFE   ++ ++++R + + ++ M LV N+ DL   R V++ + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNRCDL-AARTVESRQAQDL 133
Query: 142 AQENGLSFLETSAKSAHNVNELFY 165
           A+  G+ ++ETSAK+   V + FY
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFY 157

>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase Length = 166

Iteration: 1
 Score = 73.6 bits (179), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 45/144 (31%), Positives = 79/144 (54%), Gaps = 3/144 (2%)
Query: 23  KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 82
           K++L ++ ++  F D  + TI  ++  QV+   E T   DI DTAGQE Y ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEFDPTIEDSYRKQVVIDGE-TCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 83  XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 141
                  + I +  SFE   ++ ++++R + + ++ M LV NK DL   R V++ + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 142 AQENGLSFLETSAKSAHNVNELFY 165
           A+  G+ ++ETSAK+   V + FY
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFY 157

>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp Length = 172

Iteration: 1
 Score = 73.2 bits (178), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 80/146 (54%), Gaps = 3/146 (2%)
Query: 23  KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 82
           K++L ++ ++  F D  + +I  ++  QV+   E T   DI DTAGQE Y ++   Y R 
Sbjct: 22  KSALTIQLIQNHFVDEYDPSIEDSYRKQVVIDGE-TCLLDILDTAGQEEYSAMRDQYMRT 80
Query: 83  XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 141
                  + I +  SFE   ++ ++++R + + ++ M LV NK DL   R V++ + +  
Sbjct: 81  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 139
Query: 142 AQENGLSFLETSAKSAHNVNELFYEI 167
           A+  G+ ++ETSAK+   V + FY +
Sbjct: 140 ARSYGIPYIETSAKTRQGVEDAFYTL 165

>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser (T35s) Complexed With Guanosine-5'-[b,G-Imido] Triphosphate Length = 166

Iteration: 1
 Score = 73.2 bits (178), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 44/144 (30%), Positives = 79/144 (54%), Gaps = 3/144 (2%)
Query: 23  KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 82
           K++L ++ ++  F D  + +I  ++  QV+   E T   DI DTAGQE Y ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPSIEDSYRKQVVIDGE-TCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 83  XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 141
                  + I +  SFE   ++ ++++R + + ++ M LV NK DL   R V++ + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 142 AQENGLSFLETSAKSAHNVNELFY 165
           A+  G+ ++ETSAK+   V + FY
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFY 157

>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form Length = 166

Iteration: 1
 Score = 72.8 bits (177), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 44/144 (30%), Positives = 78/144 (54%), Gaps = 3/144 (2%)
Query: 23  KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 82
           K++L ++ ++  F D  + TI  ++  QV+   E T   DI DT GQE Y ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTGGQEEYSAMRDQYMRT 74
Query: 83  XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 141
                  + I +  SFE   ++ ++++R + + ++ M LV NK DL   R V++ + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 142 AQENGLSFLETSAKSAHNVNELFY 165
           A+  G+ ++ETSAK+   V + FY
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFY 157

>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 72.8 bits (177), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 44/144 (30%), Positives = 78/144 (54%), Gaps = 3/144 (2%)
Query: 23  KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 82
           K++L ++ ++  F D  + TI  ++  QV+   E T   DI DT GQE Y ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTTGQEEYSAMRDQYMRT 74
Query: 83  XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 141
                  + I +  SFE   ++ ++++R + + ++ M LV NK DL   R V++ + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 142 AQENGLSFLETSAKSAHNVNELFY 165
           A+  G+ ++ETSAK+   V + FY
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFY 157

>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp Length = 166

Iteration: 1
 Score = 72.4 bits (176), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 44/144 (30%), Positives = 79/144 (54%), Gaps = 3/144 (2%)
Query: 23  KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 82
           K++L ++ ++  F D  + TI  ++  QV+   E T   DI DTAG+E Y ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGKEEYSAMRDQYMRT 74
Query: 83  XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 141
                  + I +  SFE   ++ ++++R + + ++ M LV NK DL   R V++ + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 142 AQENGLSFLETSAKSAHNVNELFY 165
           A+  G+ ++ETSAK+   V + FY
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFY 157

>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 72.4 bits (176), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 44/144 (30%), Positives = 78/144 (54%), Gaps = 3/144 (2%)
Query: 23  KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 82
           K++L ++ ++  F D  + TI  ++  QV+   E T   DI DTAG E Y ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGHEEYSAMRDQYMRT 74
Query: 83  XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 141
                  + I +  SFE   ++ ++++R + + ++ M LV NK DL   R V++ + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 142 AQENGLSFLETSAKSAHNVNELFY 165
           A+  G+ ++ETSAK+   V + FY
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFY 157

>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp Length = 183

Iteration: 1
 Score = 72.4 bits (176), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 47/147 (31%), Positives = 78/147 (53%), Gaps = 3/147 (2%)
Query: 23  KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 82
           K++L ++F +  F D  + TI  ++       N+  I  D+ DTAGQE + ++   Y R 
Sbjct: 31  KSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAI-LDVLDTAGQEEFSAMREQYMRT 89
Query: 83  XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 141
                  Y +T   SFE   ++ Q + R +   +  M LVANKVDL   RKV  ++G+  
Sbjct: 90  GDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEM 149
Query: 142 AQENGLSFLETSAKSAH-NVNELFYEI 167
           A +  + ++ETSAK    NV++ F+++
Sbjct: 150 ATKYNIPYIETSAKDPPLNVDKTFHDL 176

>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras Length = 166

Iteration: 1
 Score = 72.4 bits (176), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 44/144 (30%), Positives = 79/144 (54%), Gaps = 3/144 (2%)
Query: 23  KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 82
           K++L ++ ++  F +  + TI  ++  QV+   E T   DI DTAGQE Y ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVEKYDPTIEDSYRKQVVIDGE-TCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 83  XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 141
                  + I +  SFE   ++ ++++R + + ++ M LV NK DL   R V++ + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 142 AQENGLSFLETSAKSAHNVNELFY 165
           A+  G+ ++ETSAK+   V + FY
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFY 157

>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras, In The Gdp- Bound State Length = 181

Iteration: 1
 Score = 72.0 bits (175), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 43/146 (29%), Positives = 77/146 (52%), Gaps = 2/146 (1%)
Query: 23  KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 82
           K++L ++F++  F    + TI  ++ T++ S++ +  + DI DTAGQE + ++   Y R 
Sbjct: 22  KSALTIQFIQSYFVSDYDPTIEDSY-TKICSVDGIPARLDILDTAGQEEFGAMREQYMRA 80
Query: 83  XXXXXXXYDITSMDSF-ERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELY 141
                  + I    SF E  K + Q L+ +   +  + LV NK DLE +R+V   E   +
Sbjct: 81  GHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAF 140
Query: 142 AQENGLSFLETSAKSAHNVNELFYEI 167
              + +++ E SAK   NV+E F ++
Sbjct: 141 GASHHVAYFEASAKLRLNVDEAFEQL 166

>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form Length = 166

Iteration: 1
 Score = 71.6 bits (174), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/144 (30%), Positives = 78/144 (54%), Gaps = 3/144 (2%)
Query: 23  KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 82
           K++L ++ ++  F D  + TI  ++  QV+   E T   DI DTAG E Y ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGGEEYSAMRDQYMRT 74
Query: 83  XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 141
                  + I +  SFE   ++ ++++R + + ++ M LV NK DL   R V++ + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 142 AQENGLSFLETSAKSAHNVNELFY 165
           A+  G+ ++ETSAK+   V + FY
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFY 157

>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a Mutant Length = 166

Iteration: 1
 Score = 71.2 bits (173), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/144 (30%), Positives = 78/144 (54%), Gaps = 3/144 (2%)
Query: 23  KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 82
           K++L ++ ++  F D  + TI  ++  QV+   E T   DI DTA QE Y ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAAQEEYSAMRDQYMRT 74
Query: 83  XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 141
                  + I +  SFE   ++ ++++R + + ++ M LV NK DL   R V++ + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXDL-AARTVESRQAQDL 133
Query: 142 AQENGLSFLETSAKSAHNVNELFY 165
           A+  G+ ++ETSAK+   V + FY
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFY 157

>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 71.2 bits (173), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 79/146 (54%), Gaps = 3/146 (2%)
Query: 23  KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 82
           K++L ++ ++  F D  + TI  ++  QV+   E T   DI DTAG E Y ++   Y R 
Sbjct: 21  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGLEEYSAMRDQYMRT 79
Query: 83  XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 141
                  + I +  SFE   ++ ++++R + + ++ M LV NK DL   R V++ + +  
Sbjct: 80  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 138
Query: 142 AQENGLSFLETSAKSAHNVNELFYEI 167
           A+  G+ ++ETSAK+   V + FY +
Sbjct: 139 ARSYGIPYIETSAKTRQGVEDAFYTL 164

>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant Length = 167

Iteration: 1
 Score = 71.2 bits (173), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 44/144 (30%), Positives = 78/144 (54%), Gaps = 3/144 (2%)
Query: 23  KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 82
           K++L ++ ++  F D  + TI  ++  QV+   E T   DI DTA QE Y ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAAQEEYSAMRDQYMRT 74
Query: 83  XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 141
                  + I +  SFE   ++ ++++R + + ++ M LV NK DL   R V++ + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXDL-AARTVESRQAQDL 133
Query: 142 AQENGLSFLETSAKSAHNVNELFY 165
           A+  G+ ++ETSAK+   V + FY
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFY 157

>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp Length = 166

Iteration: 1
 Score = 71.2 bits (173), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 44/144 (30%), Positives = 78/144 (54%), Gaps = 3/144 (2%)
Query: 23  KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 82
           K++L ++ ++  F D  + TI  ++  QV+   E T   DI DTAG E Y ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGVEEYSAMRDQYMRT 74
Query: 83  XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 141
                  + I +  SFE   ++ ++++R + + ++ M LV NK DL   R V++ + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 142 AQENGLSFLETSAKSAHNVNELFY 165
           A+  G+ ++ETSAK+   V + FY
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFY 157

>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The Inactive Gdp Bound State Length = 199

Iteration: 1
 Score = 71.2 bits (173), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 51/147 (34%), Positives = 77/147 (52%), Gaps = 4/147 (2%)
Query: 23  KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 82
           K+SLVLRFVKG F D    TI   +  QV+S ++      I DT G  ++ ++  +    
Sbjct: 21  KSSLVLRFVKGTFRDTYIPTIEDTY-RQVISCDKSVCTLQITDTTGSHQFPAMQRLSISK 79
Query: 83  XXXXXXXYDITSMDSFERAKKWVQEL-QRQGN-PNLIMFLVANKVDLEEKRKVKNEEGEL 140
                  + +TS  S E      + + Q +G+  ++ + LV NK D E +R+V   E + 
Sbjct: 80  GHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCD-ETQREVDTREAQA 138
Query: 141 YAQENGLSFLETSAKSAHNVNELFYEI 167
            AQE   +F+ETSAK  +NV ELF E+
Sbjct: 139 VAQEWKCAFMETSAKMNYNVKELFQEL 165

>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of The Ras-specific Nucleotide Exchange Factor Sos Length = 166

Iteration: 1
 Score = 71.2 bits (173), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 44/144 (30%), Positives = 78/144 (54%), Gaps = 3/144 (2%)
Query: 23  KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 82
           K++L ++ ++  F D  + TI  ++  QV+   E T   DI DTAGQE   ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGQEEASAMRDQYMRT 74
Query: 83  XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 141
                  + I +  SFE   ++ ++++R + + ++ M LV NK DL   R V++ + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 142 AQENGLSFLETSAKSAHNVNELFY 165
           A+  G+ ++ETSAK+   V + FY
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFY 157

>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 71.2 bits (173), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 44/144 (30%), Positives = 78/144 (54%), Gaps = 3/144 (2%)
Query: 23  KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 82
           K++L ++ ++  F D  + TI  ++  QV+   E T   DI DTAG E Y ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGLEEYSAMRDQYMRT 74
Query: 83  XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 141
                  + I +  SFE   ++ ++++R + + ++ M LV NK DL   R V++ + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 142 AQENGLSFLETSAKSAHNVNELFY 165
           A+  G+ ++ETSAK+   V + FY
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFY 157

>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp Length = 166

Iteration: 1
 Score = 71.2 bits (173), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 44/144 (30%), Positives = 78/144 (54%), Gaps = 3/144 (2%)
Query: 23  KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 82
           K++L ++ ++  F D  + TI  ++  QV+   E T   DI DTAG E Y ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGIEEYSAMRDQYMRT 74
Query: 83  XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 141
                  + I +  SFE   ++ ++++R + + ++ M LV NK DL   R V++ + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 142 AQENGLSFLETSAKSAHNVNELFY 165
           A+  G+ ++ETSAK+   V + FY
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFY 157

>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g Length = 166

Iteration: 1
 Score = 70.9 bits (172), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 78/144 (54%), Gaps = 3/144 (2%)
Query: 23  KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 82
           K++L ++ ++  F D  + TI  ++  QV+   E  +  DI DTAG E Y ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETXL-LDILDTAGGEEYSAMRDQYMRT 74
Query: 83  XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 141
                  + I +  SFE   ++ ++++R + + ++ M LV NK DL   R V++ + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 142 AQENGLSFLETSAKSAHNVNELFY 165
           A+  G+ ++ETSAK+   V + FY
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFY 157

>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS Length = 184

Iteration: 1
 Score = 70.9 bits (172), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 50/178 (28%), Positives = 90/178 (50%), Gaps = 21/178 (11%)
Query: 5   SNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAF--FTQVLSLNEVTIKFD 62
           SN+N++ K+V++GD   GKT+L+  F K     F E+ +   F  +T    ++   I+  
Sbjct: 2   SNQNVKCKIVVVGDSQCGKTALLHVFAKDC---FPENYVPTVFENYTASFEIDTQRIELS 58
Query: 63  IWDTAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERA-KKWVQELQRQGNPNLIMFLV 121
           +WDT+G   Y ++ P+ Y         +DI+  ++ +   KKW  E+Q +  PN  M LV
Sbjct: 59  LWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQ-EFCPNTKMLLV 117
Query: 122 ANKVDL------------EEKRKVKNEEGELYAQENG-LSFLETSA-KSAHNVNELFY 165
             K DL              +  V  ++G   A++ G  +++E SA +S ++V ++F+
Sbjct: 118 GCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFH 175

>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP Length = 183

Iteration: 1
 Score = 70.9 bits (172), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 47/147 (31%), Positives = 78/147 (53%), Gaps = 3/147 (2%)
Query: 23  KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 82
           K++L ++F +  F D  + TI  ++       N+  I  D+ DTAGQE + ++   Y R 
Sbjct: 31  KSALTIQFFQKIFVDEYDPTIEDSYRKHTEIDNQWAI-LDVLDTAGQEEFSAMREQYMRT 89
Query: 83  XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 141
                  Y +T   SFE   ++ Q + R +   +  M LVANKVDL   RKV  ++G+  
Sbjct: 90  GDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEM 149
Query: 142 AQENGLSFLETSAKSAH-NVNELFYEI 167
           A +  + ++ETSAK    NV++ F+++
Sbjct: 150 ATKYNIPYIETSAKDPPLNVDKTFHDL 176

>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp Length = 190

Iteration: 1
 Score = 70.5 bits (171), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 76/146 (52%), Gaps = 3/146 (2%)
Query: 23  KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 82
           K++L ++ ++  F D  + TI  ++  QV+   E  +  DI DTAGQE Y ++   Y R 
Sbjct: 34  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCL-LDILDTAGQEEYSAMRDQYMRT 92
Query: 83  XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 141
                  + I +  SF     + ++++R + + ++ M LV NK DL   R V  ++    
Sbjct: 93  GEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDL-PTRTVDTKQAHEL 151
Query: 142 AQENGLSFLETSAKSAHNVNELFYEI 167
           A+  G+ F+ETSAK+   V + FY +
Sbjct: 152 AKSYGIPFIETSAKTRQGVEDAFYTL 177

>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp (Type 1) Length = 183

Iteration: 1
 Score = 69.7 bits (169), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 46/147 (31%), Positives = 77/147 (52%), Gaps = 3/147 (2%)
Query: 23  KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 82
           K++L ++F +  F    + TI  ++       N+  I  D+ DTAGQE + ++   Y R 
Sbjct: 31  KSALTIQFFQKIFVPEYDPTIEDSYLKHTEIDNQWAI-LDVLDTAGQEEFSAMREQYMRT 89
Query: 83  XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 141
                  Y +T   SFE   ++ Q + R +   +  M LVANKVDL   RKV  ++G+  
Sbjct: 90  GDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEM 149
Query: 142 AQENGLSFLETSAKSAH-NVNELFYEI 167
           A +  + ++ETSAK    NV++ F+++
Sbjct: 150 ATKYNIPYIETSAKDPPLNVDKTFHDL 176

>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp Length = 178

Iteration: 1
 Score = 69.3 bits (168), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 46/147 (31%), Positives = 77/147 (52%), Gaps = 3/147 (2%)
Query: 23  KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 82
           K++L ++F +  F    + TI  ++       N+  I  D+ DTAGQE + ++   Y R 
Sbjct: 26  KSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAI-LDVLDTAGQEEFSAMREQYMRT 84
Query: 83  XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 141
                  Y +T   SFE   ++ Q + R +   +  M LVANKVDL   RKV  ++G+  
Sbjct: 85  GDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEM 144
Query: 142 AQENGLSFLETSAKSAH-NVNELFYEI 167
           A +  + ++ETSAK    NV++ F+++
Sbjct: 145 ATKYNIPYIETSAKDPPLNVDKTFHDL 171

>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A Constitutively Activated Small G Protein Length = 205

Iteration: 1
 Score = 69.3 bits (168), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 89/178 (50%), Gaps = 21/178 (11%)
Query: 5   SNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAF--FTQVLSLNEVTIKFD 62
            N+N++ K+V++GD   GKT+L+  F K     F E+ +   F  +T    ++   I+  
Sbjct: 23  PNQNVKCKIVVVGDSQCGKTALLHVFAKDC---FPENYVPTVFENYTASFEIDTQRIELS 79
Query: 63  IWDTAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERA-KKWVQELQRQGNPNLIMFLV 121
           +WDT+G   Y ++ P+ Y         +DI+  ++ +   KKW  E+Q +  PN  M LV
Sbjct: 80  LWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQ-EFCPNTKMLLV 138
Query: 122 ANKVDL------------EEKRKVKNEEGELYAQENG-LSFLETSA-KSAHNVNELFY 165
             K DL              +  V  ++G   A++ G  +++E SA +S ++V ++F+
Sbjct: 139 GCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFH 196

>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe Complex Structure Length = 200

Iteration: 1
 Score = 69.3 bits (168), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 89/177 (50%), Gaps = 21/177 (11%)
Query: 6   NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAF--FTQVLSLNEVTIKFDI 63
           N+N++ K+V++GD   GKT+L+  F K     F E+ +   F  +T    ++   I+  +
Sbjct: 19  NQNVKCKIVVVGDSQCGKTALLHVFAKDC---FPENYVPTVFENYTASFEIDTQRIELSL 75
Query: 64  WDTAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERA-KKWVQELQRQGNPNLIMFLVA 122
           WDT+G   Y ++ P+ Y         +DI+  ++ +   KKW  E+Q +  PN  M LV 
Sbjct: 76  WDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQ-EFCPNTKMLLVG 134
Query: 123 NKVDL------------EEKRKVKNEEGELYAQENG-LSFLETSA-KSAHNVNELFY 165
            K DL              +  V  ++G   A++ G  +++E SA +S ++V ++F+
Sbjct: 135 CKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFH 191

>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With Gtp Length = 167

Iteration: 1
 Score = 68.9 bits (167), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 50/146 (34%), Positives = 81/146 (55%), Gaps = 2/146 (1%)
Query: 23  KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 82
           K++L ++FV G F +  + TI   F+ + + ++      +I DTAG E++ S+  +Y + 
Sbjct: 16  KSALTVQFVTGTFIEKYDPTI-EDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKN 74
Query: 83  XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 141
                  Y + +  SF+  K    ++ R +    + + LV NKVDLE +R+V + EG   
Sbjct: 75  GQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRAL 134
Query: 142 AQENGLSFLETSAKSAHNVNELFYEI 167
           A+E G  F+ETSAKS   V+ELF EI
Sbjct: 135 AEEWGCPFMETSAKSKTMVDELFAEI 160

>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp Length = 175

Iteration: 1
 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/157 (33%), Positives = 73/157 (46%), Gaps = 6/157 (3%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLN---EVTIKFDIWDTAG 68
           ++VLLGD G GKTSL   F   Q  D  E  +G   + + L+++      +  D W+   
Sbjct: 6   RVVLLGDPGVGKTSLASLFAGKQERDLHEQ-LGEDVYERTLTVDGEDTTLVVVDTWEAEK 64
Query: 69  QERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLI-MFLVANKVDL 127
            ++  S      +G       Y I    SFE A +   +L+R    + + + LV NK DL
Sbjct: 65  LDKSWSQESCL-QGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADL 123
Query: 128 EEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELF 164
              R+V  EEG   A      F+ETSA   HNV ELF
Sbjct: 124 ARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELF 160

>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To Ehrho1-Gtpgammas Length = 188

Iteration: 1
 Score = 68.2 bits (165), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 85/175 (48%), Gaps = 10/175 (5%)
Query: 2   ARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAF--FTQVLSLNEVTI 59
            +  N    +K+V++GD   GKT L+L F KG+      + +   F  F+ V+       
Sbjct: 14  GKIENGKKALKIVVVGDGAVGKTCLLLAFSKGEI---PTAYVPTVFENFSHVMKYKNEEF 70
Query: 60  KFDIWDTAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFER-AKKWVQELQRQGNPNLIM 118
              +WDTAGQE Y  L P+ Y         + + +  SF+  + KW  E++   +    +
Sbjct: 71  ILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTV 130
Query: 119 FLVANKVDLEE--KRKVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYEIGDC 170
            LV  KVDL +     V  +EG+   Q+ G ++++E S+ +   +NE+F +  DC
Sbjct: 131 -LVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDC 184

>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium Length = 194

Iteration: 1
 Score = 67.8 bits (164), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 85/175 (48%), Gaps = 10/175 (5%)
Query: 2   ARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAF--FTQVLSLNEVTI 59
            +  N    +K+V++GD   GKT L+L F KG+      + +   F  F+ V+       
Sbjct: 15  GKIENGKKALKIVVVGDGAVGKTCLLLAFSKGEI---PTAYVPTVFENFSHVMKYKNEEF 71
Query: 60  KFDIWDTAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFER-AKKWVQELQRQGNPNLIM 118
              +WDTAGQE Y  L P+ Y         + + +  SF+  + KW  E++   +    +
Sbjct: 72  ILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTV 131
Query: 119 FLVANKVDLEE--KRKVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYEIGDC 170
            LV  KVDL +     V  +EG+   Q+ G ++++E S+ +   +NE+F +  DC
Sbjct: 132 -LVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDC 185

>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation Length = 192

Iteration: 1
 Score = 67.4 bits (163), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 77/170 (45%), Gaps = 16/170 (9%)
Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +K V++GD   GKT L++ +    F      T+   +   V+ ++   +   +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 62
Query: 71  RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
            Y  L P+ Y         + + S  SFE  + KW  E+ R   PN  + LV  K+DL +
Sbjct: 63  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRD 121
Query: 130 KR------------KVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYE 166
            +             +   +G   A+E G + +LE SA +   +  +F E
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 171

>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1 Length = 188

Iteration: 1
 Score = 67.4 bits (163), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 77/170 (45%), Gaps = 16/170 (9%)
Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +K V++GD   GKT L++ +    F      T+   +   V+ ++   +   +WDTAGQE
Sbjct: 8   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 66
Query: 71  RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
            Y  L P+ Y         + + S  SFE  + KW  E+ R   PN  + LV  K+DL +
Sbjct: 67  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRD 125
Query: 130 KR------------KVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYE 166
            +             +   +G   A+E G + +LE SA +   +  +F E
Sbjct: 126 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 175

>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase And Gtpase Activating Protein Sptp Bound To Rac1 Length = 184

Iteration: 1
 Score = 67.4 bits (163), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 77/170 (45%), Gaps = 16/170 (9%)
Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +K V++GD   GKT L++ +    F      T+   +   V+ ++   +   +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 62
Query: 71  RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
            Y  L P+ Y         + + S  SFE  + KW  E+ R   PN  + LV  K+DL +
Sbjct: 63  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRD 121
Query: 130 KR------------KVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYE 166
            +             +   +G   A+E G + +LE SA +   +  +F E
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 171

>pdb|1MH1|A Chain A, Small G-Protein Length = 186

Iteration: 1
 Score = 67.4 bits (163), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 77/170 (45%), Gaps = 16/170 (9%)
Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +K V++GD   GKT L++ +    F      T+   +   V+ ++   +   +WDTAGQE
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 64
Query: 71  RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
            Y  L P+ Y         + + S  SFE  + KW  E+ R   PN  + LV  K+DL +
Sbjct: 65  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRD 123
Query: 130 KR------------KVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYE 166
            +             +   +G   A+E G + +LE SA +   +  +F E
Sbjct: 124 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 173

>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas Length = 208

Iteration: 1
 Score = 67.4 bits (163), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 79/156 (50%), Gaps = 10/156 (6%)
Query: 8   NIQVKLVLLGDMGTGKTSLVLRFV-KG-QFFDFQESTIGAAFFTQVLSLNEVTIKFDIW- 64
            ++ K+ ++G+   GK++L+  F  KG +F      T G       +++ + T+  +++ 
Sbjct: 18  TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFL 77
Query: 65  -DTAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPN----LIMF 119
            DTAG + Y      Y+ G       +D++SM+SFE  K W  EL +   P+    L   
Sbjct: 78  LDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWF-ELLKSARPDRERPLRAV 136
Query: 120 LVANKVDLEEKR-KVKNEEGELYAQENGLSFLETSA 154
           LVANK DL  +R +V+ +  + +A  N L F + SA
Sbjct: 137 LVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSA 172

>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With Arfaptin (P21) Length = 192

Iteration: 1
 Score = 67.0 bits (162), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 77/170 (45%), Gaps = 16/170 (9%)
Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +K V++GD   GKT L++ +    F      T+   +   V+ ++   +   +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 62
Query: 71  RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
            Y  L P+ Y         + + S  SFE  + KW  E+ R   PN  + LV  K+DL +
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRD 121
Query: 130 KR------------KVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYE 166
            +             +   +G   A+E G + +LE SA +   +  +F E
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 171

>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The Vav1 Exchange Factor Length = 184

Iteration: 1
 Score = 66.6 bits (161), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 77/170 (45%), Gaps = 16/170 (9%)
Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +K V++GD   GKT L++ +    F      T+   +   V+ ++   +   +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 62
Query: 71  RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
            Y  L P+ Y         + + S  SFE  + KW  E+ R   PN  + LV  K+DL +
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRD 121
Query: 130 KR------------KVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYE 166
            +             +   +G   A+E G + +LE SA +   +  +F E
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 171

>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta 2 Length = 178

Iteration: 1
 Score = 66.6 bits (161), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 77/170 (45%), Gaps = 16/170 (9%)
Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +K V++GD   GKT L++ +    F      T+   +   V+ ++   +   +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 62
Query: 71  RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
            Y  L P+ Y         + + S  SFE  + KW  E+ R   PN  + LV  K+DL +
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRD 121
Query: 130 KR------------KVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYE 166
            +             +   +G   A+E G + +LE SA +   +  +F E
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 171

>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of The Pseudomonas Aeruginosa Exos Toxin And Human Rac Length = 176

Iteration: 1
 Score = 66.6 bits (161), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 77/170 (45%), Gaps = 16/170 (9%)
Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +K V++GD   GKT L++ +    F      T+   +   V+ ++   +   +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 62
Query: 71  RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
            Y  L P+ Y         + + S  SFE  + KW  E+ R   PN  + LV  K+DL +
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRD 121
Query: 130 KR------------KVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYE 166
            +             +   +G   A+E G + +LE SA +   +  +F E
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 171

>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine Nucleotide Exchange Region Of Tiam1 Length = 177

Iteration: 1
 Score = 66.6 bits (161), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 77/170 (45%), Gaps = 16/170 (9%)
Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +K V++GD   GKT L++ +    F      T+   +   V+ ++   +   +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 62
Query: 71  RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
            Y  L P+ Y         + + S  SFE  + KW  E+ R   PN  + LV  K+DL +
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRD 121
Query: 130 KR------------KVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYE 166
            +             +   +G   A+E G + +LE SA +   +  +F E
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 171

>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1. Length = 196

Iteration: 1
 Score = 66.6 bits (161), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 77/170 (45%), Gaps = 16/170 (9%)
Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +K V++GD   GKT L++ +    F      T+   +   V+ ++   +   +WDTAGQE
Sbjct: 23  IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 81
Query: 71  RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
            Y  L P+ Y         + + S  SFE  + KW  E+ R   PN  + LV  K+DL +
Sbjct: 82  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRD 140
Query: 130 KR------------KVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYE 166
            +             +   +G   A+E G + +LE SA +   +  +F E
Sbjct: 141 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 190

>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1 In Complex With Rac1 Length = 184

Iteration: 1
 Score = 66.6 bits (161), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 77/170 (45%), Gaps = 16/170 (9%)
Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +K V++GD   GKT L++ +    F      T+   +   V+ ++   +   +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 62
Query: 71  RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
            Y  L P+ Y         + + S  SFE  + KW  E+ R   PN  + LV  K+DL +
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRD 121
Query: 130 KR------------KVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYE 166
            +             +   +G   A+E G + +LE SA +   +  +F E
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 171

>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1 Length = 204

Iteration: 1
 Score = 66.2 bits (160), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 77/170 (45%), Gaps = 16/170 (9%)
Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +K V++GD   GKT L++ +    F      T+   +   V+ ++   +   +WDTAGQE
Sbjct: 31  IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 89
Query: 71  RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
            Y  L P+ Y         + + S  SFE  + KW  E+ R   PN  + LV  K+DL +
Sbjct: 90  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRD 148
Query: 130 KR------------KVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYE 166
            +             +   +G   A+E G + +LE SA +   +  +F E
Sbjct: 149 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 198

>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant Length = 187

Iteration: 1
 Score = 66.2 bits (160), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 77/170 (45%), Gaps = 16/170 (9%)
Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +K V++GD   GKT L++ +    F      T+   +   V+ ++   +   +WDTAGQE
Sbjct: 14  IKCVVVGDGAVGKTCLLISYTTNAFSGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 72
Query: 71  RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
            Y  L P+ Y         + + S  SFE  + KW  E+ R   PN  + LV  K+DL +
Sbjct: 73  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRD 131
Query: 130 KR------------KVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYE 166
            +             +   +G   A+E G + +LE SA +   +  +F E
Sbjct: 132 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 181

>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp Length = 185

Iteration: 1
 Score = 65.1 bits (157), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 78/170 (45%), Gaps = 16/170 (9%)
Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +K V++GD+  GKT L++ +    F      T+   +   V+ ++   +   +WDTAGQE
Sbjct: 10  IKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDSKPVNLGLWDTAGQE 68
Query: 71  RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
            Y  L P+ Y         + + S  S+E  + KW  E+ R   P+  + LV  K+DL +
Sbjct: 69  DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEV-RHHCPSTPIILVGTKLDLRD 127
Query: 130 KR------------KVKNEEGELYAQE-NGLSFLETSAKSAHNVNELFYE 166
            +             +   +G   A+E + + +LE SA +   +  +F E
Sbjct: 128 DKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDE 177

>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp Length = 192

Iteration: 1
 Score = 65.1 bits (157), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 77/170 (45%), Gaps = 16/170 (9%)
Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +K V++GD   GKT L++ +    F      T+   +   V+ ++   +   +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 62
Query: 71  RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
            Y  L P+ Y         + + S  SFE  + KW  E+ R   P+  + LV  K+DL +
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPHTPILLVGTKLDLRD 121
Query: 130 KR------------KVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYE 166
            +             +   +G   A+E G + +LE SA +   +  +F E
Sbjct: 122 DKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDE 171

>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs Length = 184

Iteration: 1
 Score = 64.7 bits (156), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 78/170 (45%), Gaps = 16/170 (9%)
Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +K V++GD+  GKT L++ +    F      T+   +   V+ ++   +   +WDTAGQE
Sbjct: 11  IKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDSKPVNLGLWDTAGQE 69
Query: 71  RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
            Y  L P+ Y         + + S  S+E  + KW  E+ R   P+  + LV  K+DL +
Sbjct: 70  DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEV-RHHCPSTPIILVGTKLDLRD 128
Query: 130 KR------------KVKNEEGELYAQE-NGLSFLETSAKSAHNVNELFYE 166
            +             +   +G   A+E + + +LE SA +   +  +F E
Sbjct: 129 DKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDE 178

>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With Gdp And Chloride Length = 179

Iteration: 1
 Score = 64.7 bits (156), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 77/170 (45%), Gaps = 16/170 (9%)
Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +K V++GD   GKT L++ +    F      T+   +   V+ ++   +   +WDTAGQE
Sbjct: 5   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 63
Query: 71  RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
            Y  L P+ Y         + + S  SFE  + KW  E+ R   P+  + LV  K+DL +
Sbjct: 64  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPHTPILLVGTKLDLRD 122
Query: 130 KR------------KVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYE 166
            +             +   +G   A+E G + +LE SA +   +  +F E
Sbjct: 123 DKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDE 172

>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of Gpp(Nh)p. Length = 180

Iteration: 1
 Score = 64.7 bits (156), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 77/170 (45%), Gaps = 16/170 (9%)
Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +K V++GD   GKT L++ +    F      T+   +   V+ ++   +   +WDTAGQE
Sbjct: 5   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 63
Query: 71  RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
            Y  L P+ Y         + + S  SFE  + KW  E+ R   P+  + LV  K+DL +
Sbjct: 64  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPHTPILLVGTKLDLRD 122
Query: 130 KR------------KVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYE 166
            +             +   +G   A+E G + +LE SA +   +  +F E
Sbjct: 123 DKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDE 172

>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex With Rac1 (T17n Mutant) Length = 184

Iteration: 1
 Score = 64.7 bits (156), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 76/170 (44%), Gaps = 16/170 (9%)
Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +K V++GD   GK  L++ +    F      T+   +   V+ ++   +   +WDTAGQE
Sbjct: 11  IKCVVVGDGAVGKNCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 69
Query: 71  RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
            Y  L P+ Y         + + S  SFE  + KW  E+ R   PN  + LV  K+DL +
Sbjct: 70  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRD 128
Query: 130 KR------------KVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYE 166
            +             +   +G   A+E G + +LE SA +   +  +F E
Sbjct: 129 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 178

>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant Length = 204

Iteration: 1
 Score = 64.3 bits (155), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 76/170 (44%), Gaps = 16/170 (9%)
Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +K V++GD   GKT L++ +           T+   +   V+ ++   +   +WDTAGQE
Sbjct: 31  IKCVVVGDGAVGKTCLLISYTTNALPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 89
Query: 71  RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
            Y  L P+ Y         + + S  SFE  + KW  E+ R   PN  + LV  K+DL +
Sbjct: 90  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRD 148
Query: 130 KR------------KVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYE 166
            +             +   +G   A+E G + +LE SA +   +  +F E
Sbjct: 149 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 198

>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX Length = 192

Iteration: 1
 Score = 63.9 bits (154), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 76/170 (44%), Gaps = 16/170 (9%)
Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +K V++GD   GKT L++ +    F      T+   +   V+ ++   +   +WDTAG E
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGLE 62
Query: 71  RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
            Y  L P+ Y         + + S  SFE  + KW  E+ R   PN  + LV  K+DL +
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRD 121
Query: 130 KR------------KVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYE 166
            +             +   +G   A+E G + +LE SA +   +  +F E
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 171

>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex Length = 192

Iteration: 1
 Score = 63.9 bits (154), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 77/170 (45%), Gaps = 16/170 (9%)
Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +K V++GD   GKT L++ +    F      T+   +   V+ ++   +   +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDSKPVNLGLWDTAGQE 62
Query: 71  RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
            Y  L P+ Y         + + S  S+E  + KW  E+ R   P+  + LV  K+DL +
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEV-RHHCPSTPIILVGTKLDLRD 121
Query: 130 KR------------KVKNEEGELYAQE-NGLSFLETSAKSAHNVNELFYE 166
            +             +   +G   A+E + + +LE SA +   +  +F E
Sbjct: 122 DKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDE 171

>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With Arfaptin Length = 192

Iteration: 1
 Score = 63.9 bits (154), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 76/170 (44%), Gaps = 16/170 (9%)
Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +K V++GD   GKT L++ +    F      T+   +   V+ ++   +   +WDTAG E
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGLE 62
Query: 71  RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
            Y  L P+ Y         + + S  SFE  + KW  E+ R   PN  + LV  K+DL +
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRD 121
Query: 130 KR------------KVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYE 166
            +             +   +G   A+E G + +LE SA +   +  +F E
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 171

>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1 Length = 180

Iteration: 1
 Score = 63.5 bits (153), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 76/170 (44%), Gaps = 16/170 (9%)
Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +K V++GD   GKT L++ +    F      T+   +   V+ ++   +   +WDTAG E
Sbjct: 7   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGLE 65
Query: 71  RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
            Y  L P+ Y         + + S  SFE  + KW  E+ R   PN  + LV  K+DL +
Sbjct: 66  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRD 124
Query: 130 KR------------KVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYE 166
            +             +   +G   A+E G + +LE SA +   +  +F E
Sbjct: 125 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 174

>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant Length = 204

Iteration: 1
 Score = 63.2 bits (152), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 76/170 (44%), Gaps = 16/170 (9%)
Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +K V++GD   GKT L++ +    F      T+   +   V+ ++   +   +WDTAG E
Sbjct: 31  IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGLE 89
Query: 71  RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
            Y  L P+ Y         + + S  SFE  + KW  E+ R   PN  + LV  K+DL +
Sbjct: 90  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRD 148
Query: 130 KR------------KVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYE 166
            +             +   +G   A+E G + +LE SA +   +  +F E
Sbjct: 149 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 198

>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp Form Length = 191

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 75/170 (44%), Gaps = 16/170 (9%)
Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +K V++GD+  GKT L++ +   +F      T+   +   V+   E      ++DTAGQE
Sbjct: 4   IKCVVVGDVAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGE-PYTLGLFDTAGQE 62
Query: 71  RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
            Y  L P+ Y         + + S  SFE  K KWV E+     P     LV  ++DL +
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 121
Query: 130 ------------KRKVKNEEGELYAQE-NGLSFLETSAKSAHNVNELFYE 166
                       ++ +  E  E  A++   + ++E SA +   +  +F E
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 171

>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2 Wildtype Length = 332

Iteration: 1
 Score = 61.2 bits (147), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 75/170 (44%), Gaps = 16/170 (9%)
Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +K V++GD   GKT L++ +    F      T+   +   V+ ++   +   +WDTAG E
Sbjct: 156 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGLE 214
Query: 71  RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
            Y  L P+ Y         + + S  SF   + KW  E+ R   PN  + LV  K+DL +
Sbjct: 215 DYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEV-RHHCPNTPIILVGTKLDLRD 273
Query: 130 KR------------KVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYE 166
            +             +   +G   A+E G + +LE SA +   +  +F E
Sbjct: 274 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 323

>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450m Mutant Length = 332

Iteration: 1
 Score = 61.2 bits (147), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 75/170 (44%), Gaps = 16/170 (9%)
Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +K V++GD   GKT L++ +    F      T+   +   V+ ++   +   +WDTAG E
Sbjct: 156 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGLE 214
Query: 71  RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
            Y  L P+ Y         + + S  SF   + KW  E+ R   PN  + LV  K+DL +
Sbjct: 215 DYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEV-RHHCPNTPIILVGTKLDLRD 273
Query: 130 KR------------KVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYE 166
            +             +   +G   A+E G + +LE SA +   +  +F E
Sbjct: 274 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 323

>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450a Mutant Length = 332

Iteration: 1
 Score = 61.2 bits (147), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 75/170 (44%), Gaps = 16/170 (9%)
Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +K V++GD   GKT L++ +    F      T+   +   V+ ++   +   +WDTAG E
Sbjct: 156 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGLE 214
Query: 71  RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
            Y  L P+ Y         + + S  SF   + KW  E+ R   PN  + LV  K+DL +
Sbjct: 215 DYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEV-RHHCPNTPIILVGTKLDLRD 273
Query: 130 KR------------KVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYE 166
            +             +   +G   A+E G + +LE SA +   +  +F E
Sbjct: 274 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 323

>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With Cdc42-Gmppnp Length = 178

Iteration: 1
 Score = 60.5 bits (145), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 74/170 (43%), Gaps = 16/170 (9%)
Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +K V++GD   GKT L++ +   +F      T+   +   V+   E      ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGE-PYTLGLFDTAGQE 62
Query: 71  RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
            Y  L P+ Y         + + S  SFE  K KWV E+     P     LV  ++DL +
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 121
Query: 130 ------------KRKVKNEEGELYAQE-NGLSFLETSAKSAHNVNELFYE 166
                       ++ +  E  E  A++   + ++E SA +   +  +F E
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFDE 171

>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens) Length = 177

Iteration: 1
 Score = 60.5 bits (145), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 74/170 (43%), Gaps = 16/170 (9%)
Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +K V++GD   GKT L++ +   +F      T+   +   V+   E      ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGE-PYTLGLFDTAGQE 62
Query: 71  RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
            Y  L P+ Y         + + S  SFE  K KWV E+     P     LV  ++DL +
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 121
Query: 130 ------------KRKVKNEEGELYAQE-NGLSFLETSAKSAHNVNELFYE 166
                       ++ +  E  E  A++   + ++E SA +   +  +F E
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFDE 171

>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX. Length = 191

Iteration: 1
 Score = 60.1 bits (144), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 74/170 (43%), Gaps = 16/170 (9%)
Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +K V++GD   GKT L++ +   +F      T+   +   V+   E      ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGE-PYTLGLFDTAGQE 62
Query: 71  RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
            Y  L P+ Y         + + S  SFE  K KWV E+     P     LV  ++DL +
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 121
Query: 130 ------------KRKVKNEEGELYAQE-NGLSFLETSAKSAHNVNELFYE 166
                       ++ +  E  E  A++   + ++E SA +   +  +F E
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 171

>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is Required Length = 189

Iteration: 1
 Score = 60.1 bits (144), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 74/170 (43%), Gaps = 16/170 (9%)
Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +K V++GD   GKT L++ +   +F      T+   +   V+   E      ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGE-PYTLGLFDTAGQE 62
Query: 71  RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
            Y  L P+ Y         + + S  SFE  K KWV E+     P     LV  ++DL +
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 121
Query: 130 ------------KRKVKNEEGELYAQE-NGLSFLETSAKSAHNVNELFYE 166
                       ++ +  E  E  A++   + ++E SA +   +  +F E
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 171

>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42. Length = 190

Iteration: 1
 Score = 60.1 bits (144), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 74/170 (43%), Gaps = 16/170 (9%)
Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +K V++GD   GKT L++ +   +F      T+   +   V+   E      ++DTAGQE
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGE-PYTLGLFDTAGQE 64
Query: 71  RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
            Y  L P+ Y         + + S  SFE  K KWV E+     P     LV  ++DL +
Sbjct: 65  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 123
Query: 130 ------------KRKVKNEEGELYAQE-NGLSFLETSAKSAHNVNELFYE 166
                       ++ +  E  E  A++   + ++E SA +   +  +F E
Sbjct: 124 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 173

>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The Crib Domain Of Human P21-Activated Kinase 6 (Pak6) Length = 192

Iteration: 1
 Score = 60.1 bits (144), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 74/170 (43%), Gaps = 16/170 (9%)
Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +K V++GD   GKT L++ +   +F      T+   +   V+   E      ++DTAGQE
Sbjct: 5   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGE-PYTLGLFDTAGQE 63
Query: 71  RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
            Y  L P+ Y         + + S  SFE  K KWV E+     P     LV  ++DL +
Sbjct: 64  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 122
Query: 130 ------------KRKVKNEEGELYAQE-NGLSFLETSAKSAHNVNELFYE 166
                       ++ +  E  E  A++   + ++E SA +   +  +F E
Sbjct: 123 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 172

>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex Length = 194

Iteration: 1
 Score = 60.1 bits (144), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 74/170 (43%), Gaps = 16/170 (9%)
Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +K V++GD   GKT L++ +   +F      T+   +   V+   E      ++DTAGQE
Sbjct: 7   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGE-PYTLGLFDTAGQE 65
Query: 71  RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
            Y  L P+ Y         + + S  SFE  K KWV E+     P     LV  ++DL +
Sbjct: 66  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 124
Query: 130 ------------KRKVKNEEGELYAQE-NGLSFLETSAKSAHNVNELFYE 166
                       ++ +  E  E  A++   + ++E SA +   +  +F E
Sbjct: 125 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 174

>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide Derived From P-21 Activated Kinase, Nmr, 20 Structures Length = 178

Iteration: 1
 Score = 60.1 bits (144), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 74/170 (43%), Gaps = 16/170 (9%)
Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +K V++GD   GKT L++ +   +F      T+   +   V+   E      ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGE-PYTLGLFDTAGQE 62
Query: 71  RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
            Y  L P+ Y         + + S  SFE  K KWV E+     P     LV  ++DL +
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 121
Query: 130 ------------KRKVKNEEGELYAQE-NGLSFLETSAKSAHNVNELFYE 166
                       ++ +  E  E  A++   + ++E SA +   +  +F E
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 171

>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase Binding Domain Of Wasp Length = 179

Iteration: 1
 Score = 60.1 bits (144), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 74/170 (43%), Gaps = 16/170 (9%)
Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +K V++GD   GKT L++ +   +F      T+   +   V+   E      ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGE-PYTLGLFDTAGQE 62
Query: 71  RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
            Y  L P+ Y         + + S  SFE  K KWV E+     P     LV  ++DL +
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 121
Query: 130 ------------KRKVKNEEGELYAQE-NGLSFLETSAKSAHNVNELFYE 166
                       ++ +  E  E  A++   + ++E SA +   +  +F E
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 171

>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain Sopb In Complex With Cdc42 Length = 193

Iteration: 1
 Score = 60.1 bits (144), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 74/170 (43%), Gaps = 16/170 (9%)
Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +K V++GD   GKT L++ +   +F      T+   +   V+   E      ++DTAGQE
Sbjct: 14  IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGE-PYTLGLFDTAGQE 72
Query: 71  RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
            Y  L P+ Y         + + S  SFE  K KWV E+     P     LV  ++DL +
Sbjct: 73  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 131
Query: 130 ------------KRKVKNEEGELYAQE-NGLSFLETSAKSAHNVNELFYE 166
                       ++ +  E  E  A++   + ++E SA +   +  +F E
Sbjct: 132 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 181

>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex Length = 182

Iteration: 1
 Score = 60.1 bits (144), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 74/170 (43%), Gaps = 16/170 (9%)
Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +K V++GD   GKT L++ +   +F      T+   +   V+   E      ++DTAGQE
Sbjct: 8   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGE-PYTLGLFDTAGQE 66
Query: 71  RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
            Y  L P+ Y         + + S  SFE  K KWV E+     P     LV  ++DL +
Sbjct: 67  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH-CPKTPFLLVGTQIDLRD 125
Query: 130 ------------KRKVKNEEGELYAQE-NGLSFLETSAKSAHNVNELFYE 166
                       ++ +  E  E  A++   + ++E SA +   +  +F E
Sbjct: 126 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 175

>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of The Salmonella Typhimurium Sope Toxin And Human Cdc42 Length = 180

Iteration: 1
 Score = 60.1 bits (144), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 74/170 (43%), Gaps = 16/170 (9%)
Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +K V++GD   GKT L++ +   +F      T+   +   V+   E      ++DTAGQE
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGE-PYTLGLFDTAGQE 64
Query: 71  RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
            Y  L P+ Y         + + S  SFE  K KWV E+     P     LV  ++DL +
Sbjct: 65  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 123
Query: 130 ------------KRKVKNEEGELYAQE-NGLSFLETSAKSAHNVNELFYE 166
                       ++ +  E  E  A++   + ++E SA +   +  +F E
Sbjct: 124 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 173

>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures Length = 194

Iteration: 1
 Score = 59.7 bits (143), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 74/170 (43%), Gaps = 16/170 (9%)
Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +K V++GD   GKT L++ +   +F      T+   +   V+   E      ++DTAGQE
Sbjct: 11  IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGE-PYTLGLFDTAGQE 69
Query: 71  RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
            Y  L P+ Y         + + S  SFE  K KWV E+     P     LV  ++DL +
Sbjct: 70  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 128
Query: 130 ------------KRKVKNEEGELYAQE-NGLSFLETSAKSAHNVNELFYE 166
                       ++ +  E  E  A++   + ++E SA +   +  +F E
Sbjct: 129 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 178

>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In Complex With The Multifunctional Regulator Rhogdi Length = 191

Iteration: 1
 Score = 59.7 bits (143), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 74/170 (43%), Gaps = 16/170 (9%)
Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +K V++GD   GKT L++ +   +F      T+   +   V+   E      ++DTAGQE
Sbjct: 7   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGE-PYTLGLFDTAGQE 65
Query: 71  RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
            Y  L P+ Y         + + S  SFE  K KWV E+     P     LV  ++DL +
Sbjct: 66  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 124
Query: 130 ------------KRKVKNEEGELYAQE-NGLSFLETSAKSAHNVNELFYE 166
                       ++ +  E  E  A++   + ++E SA +   +  +F E
Sbjct: 125 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 174

>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN Complex With The Placental Isoform Of Human Cdc42 Length = 188

Iteration: 1
 Score = 59.7 bits (143), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 74/170 (43%), Gaps = 16/170 (9%)
Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +K V++GD   GKT L++ +   +F      T+   +   V+   E      ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGE-PYTLGLFDTAGQE 62
Query: 71  RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
            Y  L P+ Y         + + S  SFE  K KWV E+     P     LV  ++DL +
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 121
Query: 130 ------------KRKVKNEEGELYAQE-NGLSFLETSAKSAHNVNELFYE 166
                       ++ +  E  E  A++   + ++E SA +   +  +F E
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 171

>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound With Rnd1 Gtpase Length = 197

Iteration: 1
 Score = 59.7 bits (143), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 81/171 (47%), Gaps = 24/171 (14%)
Query: 10  QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAF--FTQVLSLNEVTIKFDIWDTA 67
           + KLVL+GD+  GKT+++    K  +    E+ +   F  +T  L   E  ++  +WDT+
Sbjct: 10  RCKLVLVGDVQCGKTAMLQVLAKDCY---PETYVPTVFENYTACLETEEQRVELSLWDTS 66
Query: 68  GQERYHSLAPMYYRGXXXXXXXYDITSMDSFERA-KKWVQELQRQGNPNLIMFLVANKVD 126
           G   Y ++ P+ Y         +DI+  ++ + A KKW  E+     P+  + L+  K D
Sbjct: 67  GSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEI-LDYCPSTRVLLIGCKTD 125
Query: 127 L------------EEKRKVKNEEGELYAQENGLS-FLE----TSAKSAHNV 160
           L            +++  +  E+G   A++ G   +LE    TS KS H++
Sbjct: 126 LRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSI 176

>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The Active Gtp Bound State Length = 198

Iteration: 1
 Score = 59.7 bits (143), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 81/171 (47%), Gaps = 24/171 (14%)
Query: 10  QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAF--FTQVLSLNEVTIKFDIWDTA 67
           + KLVL+GD+  GKT+++    K  +    E+ +   F  +T  L   E  ++  +WDT+
Sbjct: 11  RCKLVLVGDVQCGKTAMLQVLAKDCY---PETYVPTVFENYTACLETEEQRVELSLWDTS 67
Query: 68  GQERYHSLAPMYYRGXXXXXXXYDITSMDSFERA-KKWVQELQRQGNPNLIMFLVANKVD 126
           G   Y ++ P+ Y         +DI+  ++ + A KKW  E+     P+  + L+  K D
Sbjct: 68  GSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEI-LDYCPSTRVLLIGCKTD 126
Query: 127 L------------EEKRKVKNEEGELYAQENGLS-FLE----TSAKSAHNV 160
           L            +++  +  E+G   A++ G   +LE    TS KS H++
Sbjct: 127 LRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSI 177

>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp Length = 174

Iteration: 1
 Score = 59.7 bits (143), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 74/162 (45%), Gaps = 7/162 (4%)
Query: 8   NIQVKLVLLGDMGTGKTSLVLRFVK-GQFFDFQESTIGAAFFTQVLSLN---EVTIKFDI 63
           N   ++VL+G+ G GK++L   F       D     +G   + + L ++      I  D+
Sbjct: 4   NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDM 63
Query: 64  WDTAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVA 122
           W+  G+  +  L     +        Y IT   SFE+A +   +L+R +   ++ + LV 
Sbjct: 64  WENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVG 121
Query: 123 NKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELF 164
           NK DL   R+V   EG   A      F+ETSA   HNV ELF
Sbjct: 122 NKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELF 163

>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem Length = 211

Iteration: 1
 Score = 59.7 bits (143), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 74/162 (45%), Gaps = 7/162 (4%)
Query: 8   NIQVKLVLLGDMGTGKTSLVLRFVK-GQFFDFQESTIGAAFFTQVLSLN---EVTIKFDI 63
           N   ++VL+G+ G GK++L   F       D     +G   + + L ++      I  D+
Sbjct: 35  NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDM 94
Query: 64  WDTAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVA 122
           W+  G+  +  L     +        Y IT   SFE+A +   +L+R +   ++ + LV 
Sbjct: 95  WENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVG 152
Query: 123 NKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELF 164
           NK DL   R+V   EG   A      F+ETSA   HNV ELF
Sbjct: 153 NKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELF 194

>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex Length = 194

Iteration: 1
 Score = 59.7 bits (143), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 79/172 (45%), Gaps = 16/172 (9%)
Query: 9   IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAG 68
           + +K V++GD   GKT L++ +    F +    T+   +   V ++        ++DTAG
Sbjct: 17  LMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSV-TVGGKQYLLGLYDTAG 75
Query: 69  QERYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDL 127
           QE Y  L P+ Y         + + +  SF+  K +WV EL+    PN+   L+  ++DL
Sbjct: 76  QEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYA-PNVPFLLIGTQIDL 134
Query: 128 EEKRK------------VKNEEGELYAQENG-LSFLETSAKSAHNVNELFYE 166
            +  K            +  E+G+  A+E G   ++E SA +   +  +F E
Sbjct: 135 RDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDE 186

>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1 Length = 214

Iteration: 1
 Score = 59.7 bits (143), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 81/171 (47%), Gaps = 24/171 (14%)
Query: 10  QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAF--FTQVLSLNEVTIKFDIWDTA 67
           + KLVL+GD+  GKT+++    K  +    E+ +   F  +T  L   E  ++  +WDT+
Sbjct: 27  RCKLVLVGDVQCGKTAMLQVLAKDCY---PETYVPTVFENYTACLETEEQRVELSLWDTS 83
Query: 68  GQERYHSLAPMYYRGXXXXXXXYDITSMDSFERA-KKWVQELQRQGNPNLIMFLVANKVD 126
           G   Y ++ P+ Y         +DI+  ++ + A KKW  E+     P+  + L+  K D
Sbjct: 84  GSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEI-LDYCPSTRVLLIGCKTD 142
Query: 127 L------------EEKRKVKNEEGELYAQENGLS-FLE----TSAKSAHNV 160
           L            +++  +  E+G   A++ G   +LE    TS KS H++
Sbjct: 143 LRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSI 193

>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 73/158 (46%), Gaps = 7/158 (4%)
Query: 12  KLVLLGDMGTGKTSLVLRFVK-GQFFDFQESTIGAAFFTQVLSLN---EVTIKFDIWDTA 67
           ++VL+G+ G GK++L   F       D     +G   + + L ++      I  D+W+  
Sbjct: 8   RVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENK 67
Query: 68  GQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVD 126
           G+  +  L     +        Y IT   SFE+A +   +L+R +   ++ + LV NK D
Sbjct: 68  GENEW--LHDHXMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSD 125
Query: 127 LEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELF 164
           L   R+V   EG   A      F+ETSA   HNV ELF
Sbjct: 126 LVRXREVSVSEGRAXAVVFDCKFIETSAAVQHNVKELF 163

>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A Self-Activating Gtpase Length = 203

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 50/189 (26%), Positives = 78/189 (41%), Gaps = 35/189 (18%)
Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +K V++GD   GKT L++ +    F      T+   +   V+ ++   +   +WDTAGQE
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 64
Query: 71  RYHSLAPMYYRGXXXXXXXYDITSMD-------------------SFERAK-KWVQELQR 110
            Y  L P+ Y          DITS                     SFE  + KW  E+ R
Sbjct: 65  DYDRLRPLSYPQTVGETYGKDITSRGKDKPIADVFLICFSLVSPASFENVRAKWYPEV-R 123
Query: 111 QGNPNLIMFLVANKVDLEEKR------------KVKNEEGELYAQENG-LSFLETSAKSA 157
              PN  + LV  K+DL + +             +   +G   A+E G + +LE SA + 
Sbjct: 124 HHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 183
Query: 158 HNVNELFYE 166
             +  +F E
Sbjct: 184 RGLKTVFDE 192

>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 73/158 (46%), Gaps = 7/158 (4%)
Query: 12  KLVLLGDMGTGKTSLVLRFVK-GQFFDFQESTIGAAFFTQVLSLN---EVTIKFDIWDTA 67
           ++VL+G+ G GK++L   F       D     +G   + + L ++      I  D+W+  
Sbjct: 8   RVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENK 67
Query: 68  GQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVD 126
           G+  +  L     +        Y IT   SFE+A +   +L+R +   ++ + LV NK D
Sbjct: 68  GENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSD 125
Query: 127 LEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELF 164
           L   R+V   EG   A      F+ETSA   HNV ELF
Sbjct: 126 LVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELF 163

>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex Length = 190

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 73/170 (42%), Gaps = 16/170 (9%)
Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +K V++GD   GKT L++ +   +F      T+   +   V    E      ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVXIGGE-PYTLGLFDTAGQE 62
Query: 71  RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
            Y  L P+ Y         + + S  SFE  K KWV E+     P     LV  ++DL +
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 121
Query: 130 ------------KRKVKNEEGELYAQE-NGLSFLETSAKSAHNVNELFYE 166
                       ++ +  E  E  A++   + ++E SA +   +  +F E
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 171

>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42 And Nucleotide Exchange Domains Of Intersectin Length = 178

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 73/170 (42%), Gaps = 16/170 (9%)
Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +K V++GD   GKT L++ +   +F      T+   +   V+   E      + DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGE-PYTLGLRDTAGQE 62
Query: 71  RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
            Y  L P+ Y         + + S  SFE  K KWV E+     P     LV  ++DL +
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 121
Query: 130 ------------KRKVKNEEGELYAQE-NGLSFLETSAKSAHNVNELFYE 166
                       ++ +  E  E  A++   + ++E SA +   +  +F E
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 171

>pdb|2KB0|A Chain A, Cdc42(T35a) Length = 178

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 74/172 (43%), Gaps = 20/172 (11%)
Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAF--FTQVLSLNEVTIKFDIWDTAG 68
           +K V++GD   GKT L++ +   +F       + A F  +   + +        ++DTAG
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKF---PSEYVPAVFDNYAVTVMIGGEPYTLGLFDTAG 60
Query: 69  QERYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDL 127
           QE Y  L P+ Y         + + S  SFE  K KWV E+     P     LV  ++DL
Sbjct: 61  QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDL 119
Query: 128 EE------------KRKVKNEEGELYAQE-NGLSFLETSAKSAHNVNELFYE 166
            +            ++ +  E  E  A++   + ++E SA +   +  +F E
Sbjct: 120 RDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 171

>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs Length = 178

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 73/170 (42%), Gaps = 16/170 (9%)
Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +K V++GD   GKT L++ +   +       T+   +   V+   E      ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKLPSEYVPTVFDNYAVTVMIGGE-PYTLGLFDTAGQE 62
Query: 71  RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
            Y  L P+ Y         + + S  SFE  K KWV E+     P     LV  ++DL +
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 121
Query: 130 ------------KRKVKNEEGELYAQE-NGLSFLETSAKSAHNVNELFYE 166
                       ++ +  E  E  A++   + ++E SA +   +  +F E
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 171

>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex With Cdc42 (T17n Mutant) Length = 195

Iteration: 1
 Score = 57.8 bits (138), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 73/170 (42%), Gaps = 16/170 (9%)
Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +K V++GD   GK  L++ +   +F      T+   +   V+   E      ++DTAGQE
Sbjct: 11  IKCVVVGDGAVGKNCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGE-PYTLGLFDTAGQE 69
Query: 71  RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
            Y  L P+ Y         + + S  SFE  K KWV E+     P     LV  ++DL +
Sbjct: 70  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 128
Query: 130 ------------KRKVKNEEGELYAQE-NGLSFLETSAKSAHNVNELFYE 166
                       ++ +  E  E  A++   + ++E SA +   +  +F E
Sbjct: 129 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 178

>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding Domain Of The Cell Polarity Protein, Par6 Length = 195

Iteration: 1
 Score = 57.0 bits (136), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 73/170 (42%), Gaps = 16/170 (9%)
Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +K V++GD   GKT L++ +   +F      T+   +   V+   E      ++DTAG E
Sbjct: 8   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGE-PYTLGLFDTAGLE 66
Query: 71  RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
            Y  L P+ Y         + + S  SFE  K KWV E+     P     LV  ++DL +
Sbjct: 67  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 125
Query: 130 ------------KRKVKNEEGELYAQE-NGLSFLETSAKSAHNVNELFYE 166
                       ++ +  E  E  A++   + ++E SA +   +  +F E
Sbjct: 126 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 175

>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex Length = 184

Iteration: 1
 Score = 57.0 bits (136), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 73/170 (42%), Gaps = 16/170 (9%)
Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +K V++GD   GKT L++ +   +F      T+   +   V+   E      ++DTAG E
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGE-PYTLGLFDTAGLE 62
Query: 71  RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
            Y  L P+ Y         + + S  SFE  K KWV E+     P     LV  ++DL +
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 121
Query: 130 ------------KRKVKNEEGELYAQE-NGLSFLETSAKSAHNVNELFYE 166
                       ++ +  E  E  A++   + ++E SA +   +  +F E
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 171

>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex Length = 166

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 75/159 (47%), Gaps = 13/159 (8%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLN--EVTIK-FDIWDTAG 68
           K++LLG  G GK++L   F  G   D  E+      + + + ++  E ++  +DIW+  G
Sbjct: 4   KVLLLGAPGVGKSALARIF--GGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDG 61
Query: 69  QE--RYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKV 125
                 H +A             Y +T   SFE+A +   +L+R +   ++ + LV NK 
Sbjct: 62  GRWLPGHCMAM-----GDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKS 116
Query: 126 DLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELF 164
           DL   R+V  +EG   A      F+ETSA   HNV  LF
Sbjct: 117 DLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALF 155

>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase Length = 174

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 75/159 (47%), Gaps = 13/159 (8%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLN--EVTIK-FDIWDTAG 68
           K++LLG  G GK++L   F  G   D  E+      + + + ++  E ++  +DIW+  G
Sbjct: 9   KVLLLGAPGVGKSALARIF--GGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDG 66
Query: 69  QE--RYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKV 125
                 H +A             Y +T   SFE+A +   +L+R +   ++ + LV NK 
Sbjct: 67  GRWLPGHCMAM-----GDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKS 121
Query: 126 DLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELF 164
           DL   R+V  +EG   A      F+ETSA   HNV  LF
Sbjct: 122 DLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALF 160

>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp Length = 176

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 75/159 (47%), Gaps = 13/159 (8%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLN--EVTIK-FDIWDTAG 68
           K++LLG  G GK++L   F  G   D  E+      + + + ++  E ++  +DIW+  G
Sbjct: 9   KVLLLGAPGVGKSALARIF--GGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDG 66
Query: 69  QE--RYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKV 125
                 H +A             Y +T   SFE+A +   +L+R +   ++ + LV NK 
Sbjct: 67  GRWLPGHCMAM-----GDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKS 121
Query: 126 DLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELF 164
           DL   R+V  +EG   A      F+ETSA   HNV  LF
Sbjct: 122 DLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALF 160

>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp Length = 195

Iteration: 1
 Score = 53.9 bits (128), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 72/161 (44%), Gaps = 14/161 (8%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLN--EVT-IKFDIW---D 65
           K++L+G+ G GK++L   F   Q     E       + + + ++  EVT + +DIW   D
Sbjct: 25  KVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGD 84
Query: 66  TAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNP--NLIMFLVAN 123
             G  R H L              + +T   SF +  + +  L R G P  +L + LV N
Sbjct: 85  AGGWLRDHCLQT-----GDAFLIVFSVTDRRSFSKVPETLLRL-RAGRPHHDLPVILVGN 138
Query: 124 KVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELF 164
           K DL   R+V  EEG   A       +ETSA   HN  ELF
Sbjct: 139 KSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELF 179

>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound To Gdp Length = 180

Iteration: 1
 Score = 53.9 bits (128), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 73/161 (45%), Gaps = 14/161 (8%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLN--EVT-IKFDIW---D 65
           K++LLG+ G GK++L   F   Q  +  E       + + + ++  EVT I +DIW   D
Sbjct: 14  KVMLLGESGVGKSTLAGTFGGLQGDNAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGD 73
Query: 66  TAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNP--NLIMFLVAN 123
             G  + H L              + +T   SF +  + +  L R G P  +L + LV N
Sbjct: 74  AGGWLQDHCLQT-----GDAFLIVFSVTDRRSFSKVPETLLRL-RAGRPHHDLPVILVGN 127
Query: 124 KVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELF 164
           K DL   R+V  EEG   A       +ETSA   HN  ELF
Sbjct: 128 KSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELF 168

>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex Length = 169

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 73/161 (45%), Gaps = 14/161 (8%)
Query: 12  KLVLLGDMGTGKTSLVLRF--VKGQFFDFQESTIGAAFFTQVLSLNEVT-IKFDIW---D 65
           K++L+G+ G GK++L   F  ++G      E++        ++   EVT I +DIW   D
Sbjct: 4   KVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGD 63
Query: 66  TAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNP--NLIMFLVAN 123
             G  + H L              + +T   SF +  + +  L R G P  +L + LV N
Sbjct: 64  AGGWLQDHCLQT-----GDAFLIVFSVTDRRSFSKVPETLLRL-RAGRPHHDLPVILVGN 117
Query: 124 KVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELF 164
           K DL   R+V  EEG   A       +ETSA   HN  ELF
Sbjct: 118 KSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELF 158

>pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In Trans State Soaked With Calcium Length = 497

Iteration: 1
 Score = 51.2 bits (121), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 37/129 (28%), Positives = 61/129 (47%), Gaps = 12/129 (9%)
Query: 8   NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTA 67
           N ++++++LG    GKT+++ +   GQ      +TI    F  V ++    +KF++WD  
Sbjct: 320 NKEMRILMLGLDAAGKTTILYKLKLGQSV----TTIPTVGF-NVETVTYKNVKFNVWDVG 374
Query: 68  GQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNP----NLIMFLVAN 123
           GQ++   L   YY G        D    D  + A+   QEL R  N     + I+ + AN
Sbjct: 375 GQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR---QELHRIINDREMRDAIILIFAN 431
Query: 124 KVDLEEKRK 132
           K DL +  K
Sbjct: 432 KQDLPDAMK 440

>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b Length = 188

Iteration: 1
 Score = 51.2 bits (121), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 58/122 (47%), Gaps = 11/122 (9%)
Query: 10  QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ 69
           +++L L+G   +GKT+ V     GQF +    T+G  F  + ++   VTIK  +WD  GQ
Sbjct: 22  EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG--FNMRKITKGNVTIK--LWDIGGQ 77
Query: 70  ERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQEL----QRQGNPNLIMFLVANKV 125
            R+ S+   Y RG        D    +  E +K  +  L    Q QG P L++    NK 
Sbjct: 78  PRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVL---GNKR 134
Query: 126 DL 127
           DL
Sbjct: 135 DL 136

>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c Length = 186

Iteration: 1
 Score = 50.8 bits (120), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 75/161 (46%), Gaps = 18/161 (11%)
Query: 10  QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ 69
           +++L L+G   +GKT+ V     GQF +    T+G  F  + ++   VTIK  IWD  GQ
Sbjct: 22  EMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVG--FNMRKVTKGNVTIK--IWDIGGQ 77
Query: 70  ERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQEL----QRQGNPNLIMFLVANKV 125
            R+ S+   Y RG        D    +  E ++  +  L    Q QG P L++    NK 
Sbjct: 78  PRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVL---GNKR 134
Query: 126 D----LEEKRKVKNEEGELYA-QENGLSFLETSAKSAHNVN 161
           D    L+EK+ +  E+  L A Q+  +     S K   N++
Sbjct: 135 DLPNALDEKQLI--EKMNLSAIQDREICCYSISCKEKDNID 173

>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp Length = 174

Iteration: 1
 Score = 50.4 bits (119), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 37/129 (28%), Positives = 61/129 (47%), Gaps = 12/129 (9%)
Query: 8   NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTA 67
           N ++++++LG    GKT+++ +   GQ      +TI    F  V ++    +KF++WD  
Sbjct: 10  NKEMRILMLGLDAAGKTTILYKLKLGQSV----TTIPTVGF-NVETVTYKNVKFNVWDVG 64
Query: 68  GQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNP----NLIMFLVAN 123
           GQ++   L   YY G        D    D  + A+   QEL R  N     + I+ + AN
Sbjct: 65  GQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR---QELHRIINDREMRDAIILIFAN 121
Query: 124 KVDLEEKRK 132
           K DL +  K
Sbjct: 122 KQDLPDAMK 130

>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b (Arl10b) Length = 193

Iteration: 1
 Score = 50.4 bits (119), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 58/122 (47%), Gaps = 11/122 (9%)
Query: 10  QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ 69
           +++L L+G   +GKT+ V     GQF +    T+G  F  + ++   VTIK  +WD  GQ
Sbjct: 31  EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG--FNMRKITKGNVTIK--LWDIGGQ 86
Query: 70  ERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQEL----QRQGNPNLIMFLVANKV 125
            R+ S+   Y RG        D    +  E +K  +  L    Q QG P L++    NK 
Sbjct: 87  PRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVL---GNKR 143
Query: 126 DL 127
           DL
Sbjct: 144 DL 145

>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By Human Arf6-Gtp Length = 175

Iteration: 1
 Score = 50.4 bits (119), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 37/129 (28%), Positives = 61/129 (47%), Gaps = 12/129 (9%)
Query: 8   NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTA 67
           N ++++++LG    GKT+++ +   GQ      +TI    F  V ++    +KF++WD  
Sbjct: 11  NKEMRILMLGLDAAGKTTILYKLKLGQSV----TTIPTVGF-NVETVTYKNVKFNVWDVG 65
Query: 68  GQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNP----NLIMFLVAN 123
           GQ++   L   YY G        D    D  + A+   QEL R  N     + I+ + AN
Sbjct: 66  GQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR---QELHRIINDREMRDAIILIFAN 122
Query: 124 KVDLEEKRK 132
           K DL +  K
Sbjct: 123 KQDLPDAMK 131

>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex Length = 160

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/126 (28%), Positives = 59/126 (46%), Gaps = 12/126 (9%)
Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +++++LG    GKT+++ +   GQ      +TI    F  V ++    +KF++WD  GQ+
Sbjct: 1   MRILMLGLDAAGKTTILYKLKLGQSV----TTIPTVGF-NVETVTYKNVKFNVWDVGGQD 55
Query: 71  RYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNP----NLIMFLVANKVD 126
           +   L   YY G        D    D  + A+   QEL R  N     + I+ + ANK D
Sbjct: 56  KIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR---QELHRIINDREMRDAIILIFANKQD 112
Query: 127 LEEKRK 132
           L +  K
Sbjct: 113 LPDAMK 118

>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp Length = 162

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/126 (28%), Positives = 59/126 (46%), Gaps = 12/126 (9%)
Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +++++LG    GKT+++ +   GQ      +TI    F  V ++    +KF++WD  GQ+
Sbjct: 1   MRILMLGLDAAGKTTILYKLKLGQSV----TTIPTVGF-NVETVTYKNVKFNVWDVGGQD 55
Query: 71  RYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNP----NLIMFLVANKVD 126
           +   L   YY G        D    D  + A+   QEL R  N     + I+ + ANK D
Sbjct: 56  KIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR---QELHRIINDREMRDAIILIFANKQD 112
Query: 127 LEEKRK 132
           L +  K
Sbjct: 113 LPDAMK 118

>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex Length = 162

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 57/125 (45%), Gaps = 12/125 (9%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           +++ LG    GKT+++ +   GQ      +TI    F  V ++    +KF++WD  GQ++
Sbjct: 2   RILXLGLDAAGKTTILYKLKLGQSV----TTIPTVGF-NVETVTYKNVKFNVWDVGGQDK 56
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNP----NLIMFLVANKVDL 127
              L   YY G        D    D  + A+   QEL R  N     + I+ + ANK DL
Sbjct: 57  IRPLWRHYYTGTQGLIFVVDCADRDRIDEAR---QELHRIINDREXRDAIILIFANKQDL 113
Query: 128 EEKRK 132
            +  K
Sbjct: 114 PDAXK 118

>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l) Length = 175

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 60/129 (46%), Gaps = 12/129 (9%)
Query: 8   NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTA 67
           N ++++++LG    GKT+++ +   GQ      +TI    F  V ++    +KF++WD  
Sbjct: 11  NKEMRILMLGLDAAGKTTILYKLKLGQ----SVTTIPTVGF-NVETVTYKNVKFNVWDVG 65
Query: 68  GQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNP----NLIMFLVAN 123
           G ++   L   YY G        D    D  + A+   QEL R  N     + I+ + AN
Sbjct: 66  GLDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR---QELHRIINDREMRDAIILIFAN 122
Query: 124 KVDLEEKRK 132
           K DL +  K
Sbjct: 123 KQDLPDAMK 131

>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A Specific Effector, Jip4 Length = 165

Iteration: 1
 Score = 47.4 bits (111), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 60/128 (46%), Gaps = 12/128 (9%)
Query: 9   IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAG 68
           +++++++LG    GKT+++ +   GQ      +TI    F  V ++    +KF++WD  G
Sbjct: 2   MEMRILMLGLDAAGKTTILYKLKLGQSV----TTIPTVGF-NVETVTYKNVKFNVWDVGG 56
Query: 69  QERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNP----NLIMFLVANK 124
            ++   L   YY G        D    D  + A+   QEL R  N     + I+ + ANK
Sbjct: 57  LDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR---QELHRIINDREMRDAIILIFANK 113
Query: 125 VDLEEKRK 132
            DL +  K
Sbjct: 114 QDLPDAMK 121

>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like Protein 1) Complex Length = 172

Iteration: 1
 Score = 47.4 bits (111), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 60/128 (46%), Gaps = 12/128 (9%)
Query: 9   IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAG 68
           +++++++LG    GKT+++ +   GQ      +TI    F  V ++    +KF++WD  G
Sbjct: 1   MEMRILMLGLDAAGKTTILYKLKLGQSV----TTIPTVGF-NVETVTYKNVKFNVWDVGG 55
Query: 69  QERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNP----NLIMFLVANK 124
            ++   L   YY G        D    D  + A+   QEL R  N     + I+ + ANK
Sbjct: 56  LDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR---QELHRIINDREMRDAIILIFANK 112
Query: 125 VDLEEKRK 132
            DL +  K
Sbjct: 113 QDLPDAMK 120

>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2 (Scarf2) Complexed With Gdp-3'p At 1.6a Resolution Length = 181

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/123 (26%), Positives = 57/123 (46%), Gaps = 6/123 (4%)
Query: 8   NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTA 67
           N +++++++G  G GKT+++ +   G+      +TI    F  V ++    I F +WD  
Sbjct: 15  NKEMRILMVGLDGAGKTTVLYKLKLGEVI----TTIPTIGF-NVETVQYKNISFTVWDVG 69
Query: 68  GQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGN-PNLIMFLVANKVD 126
           GQ+R  SL   YYR         D         A++ +Q +  +    N +  + ANK D
Sbjct: 70  GQDRIRSLWRHYYRNTEGVIFVIDSNDRSRIGEAREVMQRMLNEDELRNAVWLVFANKQD 129
Query: 127 LEE 129
           L E
Sbjct: 130 LPE 132

>pdb|2ZEJ|A Chain A, Structure Of The Roc Domain From The Parkinson's Disease-associated Leucine-rich Repeat Kinase 2 Reveals A Dimeric Gtpase Length = 184

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/131 (22%), Positives = 68/131 (51%), Gaps = 7/131 (5%)
Query: 10  QVKLVLLGDMGTGKTSLVLRFVKGQFFDF--QESTIG---AAFFTQVLSLNEVTIKFDIW 64
           + KL ++G+ G+GKT+L+ +  K +  D   Q +T+G     +  Q+    +  +  ++W
Sbjct: 2   RXKLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVW 61
Query: 65  DTAGQERYHSLAPMYYRGXXXXXXXYDITSMDS-FERAKKWVQELQRQGNPNLIMFLVAN 123
           D AG+E ++S  P +          YD++   +  +  K W+  ++ + + + ++ LV  
Sbjct: 62  DFAGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSSPVI-LVGT 120
Query: 124 KVDLEEKRKVK 134
            +D+ ++++ K
Sbjct: 121 HLDVSDEKQRK 131

>pdb|3D6T|B Chain B, Structure Of The Roc Domain From The Parkinson's Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals A Dimeric Gtpase Length = 171

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/129 (22%), Positives = 67/129 (51%), Gaps = 7/129 (5%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDF--QESTIG---AAFFTQVLSLNEVTIKFDIWDT 66
           KL ++G+ G+GKT+L+ +  K +  D   Q +T+G     +  Q+    +  +  ++WD 
Sbjct: 2   KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 61
Query: 67  AGQERYHSLAPMYYRGXXXXXXXYDITSMDS-FERAKKWVQELQRQGNPNLIMFLVANKV 125
           AG+E ++S  P +          YD++   +  +  K W+  ++ + + + ++ LV   +
Sbjct: 62  AGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSSPVI-LVGTHL 120
Query: 126 DLEEKRKVK 134
           D+ ++++ K
Sbjct: 121 DVSDEKQRK 129

>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein, Gdp- Bound Length = 181

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/123 (27%), Positives = 57/123 (46%), Gaps = 6/123 (4%)
Query: 8   NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTA 67
           N +++++++G  G GKT+++ +   G+      +TI    F  V ++    I F +WD  
Sbjct: 15  NKEMRILMVGLDGAGKTTVLYKLKLGEVI----TTIPTIGF-NVETVQYKNISFTVWDVG 69
Query: 68  GQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLV-ANKVD 126
           GQ+R  SL   YYR         D         A++ +Q +  +       +LV ANK D
Sbjct: 70  GQDRIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAWLVFANKQD 129
Query: 127 LEE 129
           L E
Sbjct: 130 LPE 132

>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound Conformation Length = 181

Iteration: 1
 Score = 43.5 bits (101), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 71/167 (42%), Gaps = 9/167 (5%)
Query: 8   NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTA 67
           N +++++++G  G GKT+++ +   G+      +TI    F  V  +    I F +WD  
Sbjct: 15  NKEMRILMVGLDGAGKTTVLYKLKLGEVI----TTIPTIGF-NVECVQYCNISFTVWDVG 69
Query: 68  GQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGN-PNLIMFLVANKVD 126
           GQ+R  SL   YY          D         A++ +Q +  +    N    + ANK D
Sbjct: 70  GQDRIRSLWRHYYCNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELCNAAWLVFANKQD 129
Query: 127 LEEKRKVK--NEEGELYAQENGLSFLE-TSAKSAHNVNELFYEIGDC 170
           L E        E+  L++  N   F++ T A S   + E    + +C
Sbjct: 130 LPEAMSAAEITEKLGLHSIRNRPWFIQATCATSGEGLYEGLEWLSNC 176

>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core Complex Length = 164

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/120 (27%), Positives = 55/120 (45%), Gaps = 6/120 (5%)
Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           ++++++G  G GKT+++ +   G+      +TI    F  V ++    I F +WD  GQ+
Sbjct: 1   MRILMVGLDGAGKTTVLYKLKLGEVI----TTIPTIGF-NVETVQYKNISFTVWDVGGQD 55
Query: 71  RYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLV-ANKVDLEE 129
           R  SL   YYR         D         A++ +Q +  +       +LV ANK DL E
Sbjct: 56  RIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAWLVFANKQDLPE 115

>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba Histolytica Hm- 1:imss Bound To Mg-Gdp Length = 178

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/128 (25%), Positives = 57/128 (44%), Gaps = 12/128 (9%)
Query: 10  QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ 69
           +++++++G    GKTS++ +   G+      +TI    F  V ++    I F +WD  GQ
Sbjct: 17  EMRILMVGLDAAGKTSILYKLKLGEIV----TTIPTIGF-NVETVEYKNISFTVWDVGGQ 71
Query: 70  ERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNP----NLIMFLVANKV 125
           ++   L   YY+         D    D    A+   +EL +  N     N I+ + ANK 
Sbjct: 72  DKIRPLWRHYYQNTQAIIFVVDSNDRDRIGEAR---EELMKMLNEDEMRNAILLVFANKH 128
Query: 126 DLEEKRKV 133
           DL +   +
Sbjct: 129 DLPQAMSI 136

>pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein In Complex With Gdp Length = 187

Iteration: 1
 Score = 39.7 bits (91), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 39/165 (23%), Positives = 72/165 (43%), Gaps = 12/165 (7%)
Query: 9   IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTA- 67
           ++V L +LG  G GK++L ++F+  +F    +  +   + ++  +++   +   + DTA 
Sbjct: 20  LEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEE-TVDHQPVHLRVMDTAD 78
Query: 68  -----GQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVA 122
                  ERY + A  +             +S    E      +E QR    ++   L+ 
Sbjct: 79  LDTPRNCERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQR----SIPALLLG 134
Query: 123 NKVDLEEKRKVKNEEGELYAQENGLSFLETSAK-SAHNVNELFYE 166
           NK+D+ + R+V   EG   A   G  F E SA     +V  +F+E
Sbjct: 135 NKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHE 179

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	178
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	1e-100
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	5e-97
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	9e-97
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	2e-96
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	2e-94
3bbp_A	211	RAB-6, RAS-related protein RAB-6A; golgi complex,	4e-94
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	1e-93
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	6e-84
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	8e-84
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	5e-83
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	2e-82
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	1e-81
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	2e-80
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	5e-80
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	6e-79
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	1e-78
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	1e-78
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	2e-78
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	2e-78
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	4e-78
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	1e-77
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	1e-77
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	6e-77
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	1e-75
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	4e-75
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	6e-75
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	8e-75
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	3e-74
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	4e-73
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	4e-72
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	6e-72
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	1e-71
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	1e-71
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	2e-71
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	4e-71
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	6e-71
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	6e-71
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	7e-71
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	2e-70
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	4e-70
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	4e-70
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	5e-70
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	2e-69
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	3e-68
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	1e-67
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	5e-67
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	2e-66
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	5e-66
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	1e-65
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	2e-65
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	3e-65
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	4e-64
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	6e-64
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	7e-64
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	8e-64
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	4e-63
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	3e-62
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	5e-62
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	1e-61
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	1e-60
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	2e-60
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	2e-60
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	2e-60
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	8e-60
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	2e-59
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	3e-59
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	7e-59
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	7e-59
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	1e-58
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	2e-53
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	6e-45
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	5e-42
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	1e-41
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	1e-41
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	2e-41
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	3e-41
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	6e-41
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	2e-40
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	7e-40
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	8e-39
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	1e-38
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	6e-38
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	1e-35
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	4e-27
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	3e-24
3llu_A	196	RAS-related GTP-binding protein C; structural geno	2e-18
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	3e-17
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	4e-17
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	9e-12
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	2e-11
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	2e-10
2fh5_B	214	SR-beta, signal recognition particle receptor beta	2e-10
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	2e-10
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	4e-10
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	5e-10
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	5e-10
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	5e-10
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	5e-10
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	8e-10
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	8e-10
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	8e-10
1nrj_B	218	SR-beta, signal recognition particle receptor beta	1e-09
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	1e-09
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	2e-09
2ged_A	193	SR-beta, signal recognition particle receptor beta	4e-09
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	4e-06
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	5e-06
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	5e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	4e-04

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* Length = 181

 Score =  285 bits (732), Expect = e-100
 Identities = 118/167 (70%), Positives = 141/167 (84%)

Query: 1   MARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIK 60
           MA   NK+I  KLVLLGD+G GK+SLVLRFVK QF +FQESTIGAAFF+Q L++N+ T+K
Sbjct: 3   MAAAGNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVK 62

Query: 61  FDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFL 120
           F+IWDTAGQERYHSLAPMYYRGAAAA++V+D+T+  SFERAKKWVQELQ QGNPN++M L
Sbjct: 63  FEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMAL 122

Query: 121 VANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
             NK DL + RKV  E+ + YAQENGL F+ETSAK+A NV E+FYEI
Sbjct: 123 AGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEI 169

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 Length = 192

 Score =  277 bits (712), Expect = 5e-97
 Identities = 82/167 (49%), Positives = 110/167 (65%)

Query: 1   MARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIK 60
           +    +   ++K+ LLGD G GK+S+V RFV+  F      TIGA+F T+ +       K
Sbjct: 14  LVPRGSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHK 73

Query: 61  FDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFL 120
           F IWDTAGQER+HSLAPMYYRG+AAAV+VYDIT  DSF   KKWV+EL+  G  N++M +
Sbjct: 74  FLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAI 133

Query: 121 VANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
             NK DL + R+V  ++ + YA+  G   +ETSAK+A N+ ELF  I
Sbjct: 134 AGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGI 180

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* Length = 170

 Score =  276 bits (708), Expect = 9e-97
 Identities = 106/162 (65%), Positives = 129/162 (79%)

Query: 6   NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWD 65
           NK  Q KLVLLG+   GK+SLVLRFVKGQF +FQESTIGAAF TQ + L++ T+KF+IWD
Sbjct: 2   NKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWD 61

Query: 66  TAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKV 125
           TAGQERYHSLAPMYYRGA AA+VVYDIT+ +SF RAK WV+ELQRQ +PN+++ L  NK 
Sbjct: 62  TAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKA 121

Query: 126 DLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
           DL  KR V  +E + YA +N L F+ETSAK++ NVNE+F  I
Sbjct: 122 DLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAI 163

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Length = 170

 Score =  275 bits (707), Expect = 2e-96
 Identities = 75/162 (46%), Positives = 108/162 (66%)

Query: 6   NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWD 65
           +   ++K+ LLGD G GK+S++ RFV+  F      TIGA+F T+ +       KF IWD
Sbjct: 2   SALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWD 61

Query: 66  TAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKV 125
           TAG ER+ +LAPMYYRG+AAA++VYDIT  ++F   K WV+EL++ G P++++ +  NK 
Sbjct: 62  TAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKC 121

Query: 126 DLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
           DL + R+V   + + YA      F+ETSAK+A N+NELF EI
Sbjct: 122 DLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEI 163

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* Length = 179

 Score =  270 bits (693), Expect = 2e-94
 Identities = 71/166 (42%), Positives = 107/166 (64%)

Query: 2   ARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKF 61
               N   + KLV LG+   GKTSL+ RF+   F +  ++TIG  F ++ + L + T++ 
Sbjct: 6   GDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRL 65

Query: 62  DIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLV 121
            +WDTAGQER+ SL P Y R +  AVVVYDIT+ +SF +  KW+ +++ +   ++I+ LV
Sbjct: 66  QLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLV 125

Query: 122 ANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
            NK DL +KR+V  EEGE  A+E  + F+ETSAK+ +NV +LF  +
Sbjct: 126 GNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 171

>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens} Length = 211

 Score =  271 bits (694), Expect = 4e-94
 Identities = 70/166 (42%), Positives = 108/166 (65%)

Query: 2   ARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKF 61
               N   + KLV LG+   GKTSL+ RF+   F +  ++TIG  F ++ + L + T++ 
Sbjct: 8   GDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRL 67

Query: 62  DIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLV 121
            +WDTAG ER+ SL P Y R +  AVVVYDIT+++SF++  KW+ +++ +   ++I+ LV
Sbjct: 68  QLWDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLV 127

Query: 122 ANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
            NK DL +KR+V  EEGE  A+E  + F+ETSAK+ +NV +LF  +
Sbjct: 128 GNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 173

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Length = 170

 Score =  268 bits (687), Expect = 1e-93
 Identities = 70/162 (43%), Positives = 106/162 (65%)

Query: 6   NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWD 65
           ++    K+VLLG+   GKTSLVLR+ + +F D   +T+GA+F T+ L++    +   IWD
Sbjct: 2   SRAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWD 61

Query: 66  TAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKV 125
           TAGQER+H+L P+YYR +  A++VYDIT  DSF++ K WV+EL++     + + +V NK+
Sbjct: 62  TAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKI 121

Query: 126 DLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
           DLE++R V  +E E YA+  G     TSAK    + ELF ++
Sbjct: 122 DLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDL 163

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Length = 178

 Score =  244 bits (625), Expect = 6e-84
 Identities = 57/166 (34%), Positives = 88/166 (53%), Gaps = 4/166 (2%)

Query: 6   NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLN-EVTIKFDIW 64
           +   Q+K+V+LGD  +GKTSL   F +  F    + TIG  FF + ++L   + +   IW
Sbjct: 2   SHMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIW 61

Query: 65  DTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKW---VQELQRQGNPNLIMFLV 121
           D  GQ     +   Y  GA   ++VYDIT+  SFE  + W   V+++  +     ++ LV
Sbjct: 62  DIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALV 121

Query: 122 ANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
            NK+DLE  R +K E+   + QENG S    SAK+  +V   F ++
Sbjct: 122 GNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKV 167

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} Length = 218

 Score =  245 bits (628), Expect = 8e-84
 Identities = 51/167 (30%), Positives = 87/167 (52%), Gaps = 1/167 (0%)

Query: 2   ARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQ-VLSLNEVTIK 60
                + +  K+ L+GD G GKT+ + R + G+F     +T+GA       L      IK
Sbjct: 3   GSMERRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIK 62

Query: 61  FDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFL 120
           F++WDTAGQE+   L  +YY GA+ A++ +D+TS  + +   +WV+E Q        + +
Sbjct: 63  FNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVV 122

Query: 121 VANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
            ANK+D++ ++K+  +      +     + E SAK+AHN    F  +
Sbjct: 123 CANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHL 169

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} Length = 193

 Score =  242 bits (620), Expect = 5e-83
 Identities = 63/169 (37%), Positives = 100/169 (59%), Gaps = 2/169 (1%)

Query: 1   MARTSNKNI--QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVT 58
           +    +++     K+VL+G+ G GKT+L+ RF + +F     +TIG  F T+ + L    
Sbjct: 14  LVPRGSEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAA 73

Query: 59  IKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIM 118
           +K  IWDTAG ERY ++   YYRGA  A++V+D+T   ++   ++W++EL       +++
Sbjct: 74  VKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVV 133

Query: 119 FLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
            LV NK DL + R+V  EE  ++A+ NGL FLETSA  + NV   F  +
Sbjct: 134 MLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETV 182

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* Length = 191

 Score =  240 bits (616), Expect = 2e-82
 Identities = 68/156 (43%), Positives = 101/156 (64%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K+VL+GD G GK++L+ RF + +F    +STIG  F T+ + ++  TIK  IWDTAG ER
Sbjct: 31  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLER 90

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           Y ++   YYRGA  A++VYDI    ++E  ++W++EL+   + N+++ LV NK DL   R
Sbjct: 91  YRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLR 150

Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
            V  +E   +A++NGLSF+ETSA  + NV   F  I
Sbjct: 151 AVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTI 186

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Length = 199

 Score =  239 bits (612), Expect = 1e-81
 Identities = 69/156 (44%), Positives = 101/156 (64%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K+VL+GD G GK++L+ RF + +F    +STIG  F T+ + ++  TIK  IWDTAGQER
Sbjct: 7   KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQER 66

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           Y  +   YYRGA  A++VYDI    ++E  ++W++EL+   + N+++ LV NK DL   R
Sbjct: 67  YRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLR 126

Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
            V  +E   +A++N LSF+ETSA  + NV E F  I
Sbjct: 127 AVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNI 162

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} Length = 223

 Score =  236 bits (605), Expect = 2e-80
 Identities = 71/156 (45%), Positives = 99/156 (63%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K+VL+GD G GK++L+ RF K +F    +STIG  F T+ L +    IK  IWDTAGQER
Sbjct: 15  KIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQER 74

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           Y ++   YYRGA  A++VYDI+   S+E    W+ EL+   + N+ + L+ NK DL   R
Sbjct: 75  YRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLR 134

Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
            V  EE + +AQEN L F ETSA ++ NV++ F E+
Sbjct: 135 AVPTEESKTFAQENQLLFTETSALNSENVDKAFEEL 170

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* Length = 179

 Score =  234 bits (599), Expect = 5e-80
 Identities = 67/156 (42%), Positives = 99/156 (63%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K +++GDMG GK+ L+ +F + +F      TIG  F T+++ ++   IK  IWDTAGQER
Sbjct: 17  KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQER 76

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           + ++   YYRGAA A++VYDIT   ++     W+ + +   NPN ++ L+ NK DLE +R
Sbjct: 77  FRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQR 136

Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
            V  EE + +A+ENGL FLE SAK+  NV + F E 
Sbjct: 137 DVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEA 172

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} Length = 200

 Score =  232 bits (594), Expect = 6e-79
 Identities = 65/156 (41%), Positives = 100/156 (64%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K +++G  GTGK+ L+ +F++ +F      TIG  F ++V+++   T+K  IWDTAGQER
Sbjct: 27  KFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQER 86

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           + S+   YYRGAA A++VYDITS +++     W+ + +   +PN+++ L  NK DL+ +R
Sbjct: 87  FRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPER 146

Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
           +V   E   +AQEN L FLETSA +  NV E F + 
Sbjct: 147 EVTFLEASRFAQENELMFLETSALTGENVEEAFLKC 182

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* Length = 191

 Score =  231 bits (591), Expect = 1e-78
 Identities = 68/156 (43%), Positives = 104/156 (66%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K +++GD G GK+ L+L+F   +F    + TIG  F  ++++++   IK  IWDTAGQE 
Sbjct: 23  KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQES 82

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           + S+   YYRGAA A++VYDIT  ++F     W+++ ++  + N+++ L+ NK DLE +R
Sbjct: 83  FRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRR 142

Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
            VK EEGE +A+E+GL F+ETSAK+A NV E F   
Sbjct: 143 DVKREEGEAFAREHGLIFMETSAKTACNVEEAFINT 178

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Length = 168

 Score =  230 bits (589), Expect = 1e-78
 Identities = 56/156 (35%), Positives = 91/156 (58%), Gaps = 1/156 (0%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K+V++G+   GK+S++ R+ KG F    + TIG  F  + + +N+  ++  +WDTAGQE 
Sbjct: 7   KMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEE 66

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           + ++   YYRGA A V+V+  T  +SFE    W +++  +   ++   LV NK+DL +  
Sbjct: 67  FDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVG-DIPTALVQNKIDLLDDS 125

Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
            +KNEE E  A+   L F  TS K   NV+E+F  +
Sbjct: 126 CIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYL 161

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ... Length = 221

 Score =  231 bits (592), Expect = 2e-78
 Identities = 57/169 (33%), Positives = 95/169 (56%), Gaps = 5/169 (2%)

Query: 1   MARTSNKNIQV--KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVT 58
           MA  +    QV  KLVL+GD GTGKT+ V R + G+F     +T+G      V   N   
Sbjct: 4   MASAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGP 63

Query: 59  IKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIM 118
           IKF++WDTAGQE++  L   YY  A  A++++D+TS  +++    W ++L R    N+ +
Sbjct: 64  IKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-ENIPI 122

Query: 119 FLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
            L  NKVD+++++     +  ++ ++  L + + SAKS +N  + F  +
Sbjct: 123 VLCGNKVDIKDRKVK--AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWL 169

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} Length = 208

 Score =  231 bits (590), Expect = 2e-78
 Identities = 79/199 (39%), Positives = 112/199 (56%), Gaps = 40/199 (20%)

Query: 6   NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIK----- 60
            K    K VLLG+   GK+S+VLR  K  F +   +TIGA+F T V++LN++ IK     
Sbjct: 3   EKKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNN 62

Query: 61  --------------------------------FDIWDTAGQERYHSLAPMYYRGAAAAVV 88
                                           FDIWDTAGQERY S+ P+YYRGA  A+V
Sbjct: 63  EKNNNINSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIV 122

Query: 89  VYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLS 148
           V+DI++ ++ +RAK WV +L+   + N I+ LVANK+D   K +V   E + YAQ+N L 
Sbjct: 123 VFDISNSNTLDRAKTWVNQLKI--SSNYIIILVANKIDK-NKFQVDILEVQKYAQDNNLL 179

Query: 149 FLETSAKSAHNVNELFYEI 167
           F++TSAK+  N+  +FY +
Sbjct: 180 FIQTSAKTGTNIKNIFYML 198

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* Length = 207

 Score =  230 bits (589), Expect = 4e-78
 Identities = 62/168 (36%), Positives = 99/168 (58%), Gaps = 4/168 (2%)

Query: 4   TSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDI 63
           TS K + +K+++LGD G GKTSL+ ++V  +F +  ++TIGA F T+ + +++  +   I
Sbjct: 2   TSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQI 61

Query: 64  WDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNP----NLIMF 119
           WDTAGQER+ SL   +YRGA   V+V+D+T+ ++F+    W  E   Q +P    N    
Sbjct: 62  WDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFV 121

Query: 120 LVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
           ++ NK+DLE ++            +N + + ETSAK A NV + F  I
Sbjct: 122 VLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTI 169

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C Length = 208

 Score =  229 bits (586), Expect = 1e-77
 Identities = 46/172 (26%), Positives = 82/172 (47%), Gaps = 9/172 (5%)

Query: 5   SNKNIQVKLVLLGDMGTGKTSLVLRFVK--GQFFDFQESTIGAAFFTQVLSLNEVTIKFD 62
               ++ K+ ++G+   GK++L+  F     +F      T G       +++ + T+  +
Sbjct: 15  ITATLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVE 74

Query: 63  IW--DTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQ---GNPNLI 117
           ++  DTAG + Y      Y+ G   A++V+D++SM+SFE  K W + L+         L 
Sbjct: 75  LFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLR 134

Query: 118 MFLVANKVDLEEKRK-VKNEEGELYAQENGLSFLETSAK-SAHNVNELFYEI 167
             LVANK DL  +R  V+ +  + +A  N L F + SA     + +  F  I
Sbjct: 135 AVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSI 186

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 201

 Score =  229 bits (585), Expect = 1e-77
 Identities = 65/156 (41%), Positives = 100/156 (64%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K+VL+G+ G GKT LV RF +G F   Q +TIG  F  + + +N   +K  IWDTAGQER
Sbjct: 28  KIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQER 87

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           + S+   YYR A A ++ YDIT  +SF    +W++E+++  +  +I  LV NK+DL E+R
Sbjct: 88  FRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERR 147

Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
           +V  +  E +++   + +LETSAK + NV +LF ++
Sbjct: 148 EVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDL 183

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* Length = 186

 Score =  226 bits (579), Expect = 6e-77
 Identities = 63/156 (40%), Positives = 99/156 (63%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K +++G+ GTGK+ L+ +F++ +F D    TIG  F ++++++    +K  IWDTAGQER
Sbjct: 12  KFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQER 71

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           + S+   YYRGAA A++VYDITS +++     W+ + +   + N+++ L  NK DL+  R
Sbjct: 72  FRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADR 131

Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
           +V   E   +AQEN L FLETSA +  NV E F + 
Sbjct: 132 EVTFLEASRFAQENELMFLETSALTGENVEEAFVQC 167

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 170

 Score =  223 bits (569), Expect = 1e-75
 Identities = 89/161 (55%), Positives = 116/161 (72%), Gaps = 3/161 (1%)

Query: 10  QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ 69
            +KLVLLG+   GK+S+VLRFV   F + +E TIGAAF TQ +++NE T+KF+IWDTAGQ
Sbjct: 3   SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQ 62

Query: 70  ERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVD--- 126
           ER+ SLAP YYR A AA+VVYD+T   SF +A+ WV+EL  Q + ++I+ LV NK+D   
Sbjct: 63  ERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQ 122

Query: 127 LEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
              +RKV  EEGE  A+E GL F ETSAK+  NVN++F  I
Sbjct: 123 EGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGI 163

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} Length = 199

 Score =  222 bits (569), Expect = 4e-75
 Identities = 69/156 (44%), Positives = 96/156 (61%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           KL+L+GD G GK+ L+LRF    + +   STIG  F  + + L+  TIK  IWDTAGQER
Sbjct: 35  KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 94

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           + ++   YYRGA   +VVYD+T  +SF   K+W+QE+ R  + N+   LV NK DL  K+
Sbjct: 95  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKK 154

Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
            V     + +A   G+ FLETSAK+A NV + F  +
Sbjct: 155 VVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTM 190

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} Length = 196

 Score =  222 bits (567), Expect = 6e-75
 Identities = 69/156 (44%), Positives = 96/156 (61%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           KL+L+GD G GK+ L+LRF    + +   STIG  F  + + L+  TIK  IWDTAGQER
Sbjct: 18  KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 77

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           + ++   YYRGA   +VVYD+T  +SF   K+W+QE+ R  + N+   LV NK DL  K+
Sbjct: 78  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKK 137

Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
            V     + +A   G+ FLETSAK+A NV + F  +
Sbjct: 138 VVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTM 173

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* Length = 206

 Score =  222 bits (567), Expect = 8e-75
 Identities = 63/156 (40%), Positives = 96/156 (61%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           KL+L+G+ G GK+ L+LRF    + +   STIG  F  + + L+  T+K  IWDTAGQER
Sbjct: 10  KLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQER 69

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           + ++   YYRG+   ++VYD+T  +SF   K W+QE+ R     ++  LV NK DL++KR
Sbjct: 70  FRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKR 129

Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
            V+ +  + +A  N + FLETSA  + NV + F  +
Sbjct: 130 VVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTM 165

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} Length = 201

 Score =  220 bits (563), Expect = 3e-74
 Identities = 64/157 (40%), Positives = 90/157 (57%), Gaps = 1/157 (0%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           KLVL+GD   GKT +V RF  G F + Q STIG  F  + L +    +K  IWDTAGQER
Sbjct: 31  KLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQER 90

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           + ++   YYR A  A++ YDIT   SF     W++++++    N++  L+ NK DL E R
Sbjct: 91  FRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELR 150

Query: 132 KVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYEI 167
           +V   E +  A+    L  +ETSAK + NV E F  +
Sbjct: 151 EVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRV 187

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} Length = 199

 Score =  217 bits (555), Expect = 4e-73
 Identities = 54/162 (33%), Positives = 85/162 (52%), Gaps = 6/162 (3%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K+VL GD   GK+S ++R  K +F +   +T+G  F  + L ++       +WDTAGQER
Sbjct: 30  KIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQER 89

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDL---- 127
           + S+A  Y+R A   +++YD+T   SF   ++WV  ++   +  + + LV NK D+    
Sbjct: 90  FRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTA 149

Query: 128 --EEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
             E ++ V    GE  A   G  F ETSAK   N+ E    +
Sbjct: 150 ATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHL 191

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* Length = 189

 Score =  214 bits (548), Expect = 4e-72
 Identities = 59/172 (34%), Positives = 93/172 (54%), Gaps = 5/172 (2%)

Query: 1   MARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIK 60
           +    +++   K++++GD   GKT L  RF  G+F D  E+TIG  F  + + ++   IK
Sbjct: 11  LVPRGSRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIK 70

Query: 61  FDIWDTAGQERYH-SLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLI-M 118
             +WDTAGQER+  S+   YYR   A V VYD+T+M SF     W++E ++    N I  
Sbjct: 71  IQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPR 130

Query: 119 FLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAH---NVNELFYEI 167
            LV NK DL    +V  +  + +A  + +   ETSAK+ +   +V  +F  +
Sbjct: 131 ILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTL 182

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* Length = 183

 Score =  213 bits (546), Expect = 6e-72
 Identities = 62/156 (39%), Positives = 96/156 (61%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           KL+L+GD G GKT ++ RF +  F     STIG  F  + + L+   IK  IWDTAGQER
Sbjct: 10  KLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQER 69

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           + ++   YYRGA   ++VYDIT+  SF+  + W++ ++   + ++   ++ NK D+ +KR
Sbjct: 70  FRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKR 129

Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
           +V  E GE  A + G+ F+ETSAK+  NV   F+ +
Sbjct: 130 QVSKERGEKLALDYGIKFMETSAKANINVENAFFTL 165

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 Length = 203

 Score =  214 bits (547), Expect = 1e-71
 Identities = 57/156 (36%), Positives = 86/156 (55%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K++++G+   GKTS + R+    F     ST+G  F  + +  N+  IK  IWDTAG ER
Sbjct: 10  KILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLER 69

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           Y ++   YYRGA   +++YDIT+ +SF   + W  +++     N  + LV NK D+E++R
Sbjct: 70  YRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDER 129

Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
            V +E G   A   G  F E SAK   NV + F  +
Sbjct: 130 VVSSERGRQLADHLGFEFFEASAKDNINVKQTFERL 165

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 Length = 195

 Score =  213 bits (545), Expect = 1e-71
 Identities = 63/157 (40%), Positives = 94/157 (59%), Gaps = 2/157 (1%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K++++G+ G GK+SL+LRF    F     +TIG  F  + +S++    K  IWDTAGQER
Sbjct: 17  KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQER 76

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLI-MFLVANKVDLEEK 130
           + +L P YYRGA   ++VYD+T  D+F +   W+ EL+     N I   LV NK+D  E 
Sbjct: 77  FRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDK-EN 135

Query: 131 RKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
           R+V   EG  +A+++ + F+E SAK+   V   F E+
Sbjct: 136 REVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEEL 172

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* Length = 189

 Score =  213 bits (544), Expect = 2e-71
 Identities = 59/156 (37%), Positives = 88/156 (56%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           KL+L+G+   GKTS + R+    F     ST+G  F  + +  ++  IK  IWDTAGQER
Sbjct: 24  KLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQER 83

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           Y ++   YYRGA   +++YDI + +SF   + W  +++     N  + LV NK DLE++R
Sbjct: 84  YRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDER 143

Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
            V  E+G   A + G  F E SAK   NV ++F  +
Sbjct: 144 VVPAEDGRRLADDLGFEFFEASAKENINVKQVFERL 179

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* Length = 177

 Score =  211 bits (541), Expect = 4e-71
 Identities = 57/168 (33%), Positives = 90/168 (53%), Gaps = 6/168 (3%)

Query: 5   SNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIW 64
           + K+   K++LLGD G GK+SL+ R+V  +F      TIG  F  + L ++   +   IW
Sbjct: 2   AGKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIW 61

Query: 65  DTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNP----NLIMFL 120
           DTAGQER+ SL   +YRG+   ++ + +    SF+    W +E     +     +    +
Sbjct: 62  DTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVI 121

Query: 121 VANKVDLEEKRKVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYEI 167
           + NK+D+ E R+V  EE + + ++NG   + ETSAK A NV   F E 
Sbjct: 122 LGNKIDISE-RQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEA 168

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} Length = 192

 Score =  211 bits (540), Expect = 6e-71
 Identities = 59/157 (37%), Positives = 98/157 (62%), Gaps = 1/157 (0%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           +++++G  G GKTSL+ RF    F +  +ST+G  F  + + L    I+  IWDTAGQER
Sbjct: 28  QVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQER 87

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           ++S+   YYR A   ++VYDIT  ++F+   KW++ + +  + +  + LV NK+D E  R
Sbjct: 88  FNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDR 147

Query: 132 KVKNEEGELYAQE-NGLSFLETSAKSAHNVNELFYEI 167
           ++  ++GE +AQ+  G+ F E SAK   NV+E+F ++
Sbjct: 148 EITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKL 184

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 180

 Score =  211 bits (539), Expect = 6e-71
 Identities = 67/157 (42%), Positives = 99/157 (63%), Gaps = 1/157 (0%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQE-STIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           K++L+GD G GKT L++RF  G F      ST+G  F  +VL ++ V +K  +WDTAGQE
Sbjct: 12  KVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQE 71

Query: 71  RYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEK 130
           R+ S+   YYR A A +++YD+T+  SF+  + W+ E+      ++ + L+ NKVD   +
Sbjct: 72  RFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHE 131

Query: 131 RKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
           R VK E+GE  A+E GL F+ETSAK+  NV+  F  I
Sbjct: 132 RVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAI 168

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} Length = 191

 Score =  211 bits (540), Expect = 7e-71
 Identities = 59/156 (37%), Positives = 91/156 (58%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           KL+++G+   GKTS + R+    F     ST+G  F  + +  +E  +K  IWDTAGQER
Sbjct: 25  KLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQER 84

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           Y ++   YYRGA   +++YDIT+ +SF   + W  +++     N  + LV NK D+EE+R
Sbjct: 85  YRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEER 144

Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
            V  E+G+L A++ G  F E SAK   +V + F  +
Sbjct: 145 VVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERL 180

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* Length = 182

 Score =  210 bits (536), Expect = 2e-70
 Identities = 66/174 (37%), Positives = 99/174 (56%), Gaps = 9/174 (5%)

Query: 1   MARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLN-EVTI 59
           M+  S K   +K+++LGD G GKTSL+ R+V  ++    ++TIGA F T+ ++++ +   
Sbjct: 1   MS--SRKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVA 58

Query: 60  KFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNP----N 115
              +WDTAGQER+ SL   +YRGA   V+VYD+T+  SFE  K W  E     N      
Sbjct: 59  TMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPET 118

Query: 116 LIMFLVANKVDLEE-KRKVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYEI 167
               ++ NK+D EE K+ V  +  +  A+  G +    TSAK+A NV+  F EI
Sbjct: 119 FPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEI 172

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Length = 181

 Score =  209 bits (534), Expect = 4e-70
 Identities = 63/156 (40%), Positives = 93/156 (59%), Gaps = 1/156 (0%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           KL+++GD G GK+SL+LRF    F     +TIG  F  + + +N   +K  IWDTAGQER
Sbjct: 11  KLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQER 70

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           + ++   YYRG    +VVYD+TS +SF   K+W+ E+ +    ++   LV NK D  E++
Sbjct: 71  FRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNC-DDVCRILVGNKNDDPERK 129

Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
            V+ E+   +A + G+   ETSAK   NV E+F  I
Sbjct: 130 VVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCI 165

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 213

 Score =  210 bits (537), Expect = 4e-70
 Identities = 62/156 (39%), Positives = 98/156 (62%), Gaps = 1/156 (0%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K++L+GD G GK+ L++RFV+ +F     +TIG  F  + + +N   +K  +WDTAGQER
Sbjct: 22  KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQER 81

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           + ++   YYRGA   ++VYD+T   +F   K+W + +    N    + LV NK D+ E R
Sbjct: 82  FRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETR 140

Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
            V  ++GE  A+E G+ F+E+SAK+  NVNE+F+ +
Sbjct: 141 VVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTL 176

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A Length = 170

 Score =  208 bits (532), Expect = 5e-70
 Identities = 64/156 (41%), Positives = 98/156 (62%), Gaps = 1/156 (0%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K++L+GD G GK+ L++RFV+ +F     +TIG  F  + + +N   +K  IWDTAGQER
Sbjct: 5   KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER 64

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           + ++   YYRGA   ++VYDIT   +F   K+W + +    N    + LV NK D+ E R
Sbjct: 65  FRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETR 123

Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
            V  ++GE  A+E G+ F+E+SAK+  NVNE+F+ +
Sbjct: 124 VVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTL 159

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} Length = 201

 Score =  208 bits (532), Expect = 2e-69
 Identities = 50/159 (31%), Positives = 88/159 (55%), Gaps = 2/159 (1%)

Query: 10  QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ 69
             K+V+LG    GKTSL  +FV+G+F +  + T+    ++++++L +      + DTAGQ
Sbjct: 24  YRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVEN-TYSKIVTLGKDEFHLHLVDTAGQ 82

Query: 70  ERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQ-GNPNLIMFLVANKVDLE 128
           + Y  L   +  G    V+VY +TS+ SF+  +   Q+L    G   + + LV NK DL 
Sbjct: 83  DEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLS 142

Query: 129 EKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
            +R+V+  EG+  A+  G +F+E+SA+       +F ++
Sbjct: 143 PEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKV 181

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* Length = 217

 Score =  206 bits (525), Expect = 3e-68
 Identities = 51/180 (28%), Positives = 89/180 (49%), Gaps = 13/180 (7%)

Query: 1   MARTSNKN--IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLN--- 55
           +    + +    +KL+ LGD G GKT+ + R+   +F     +T+G  F  + +  N   
Sbjct: 14  LVPRGSGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQG 73

Query: 56  -------EVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQEL 108
                     +   +WDTAGQER+ SL   ++R A   ++++D+TS  SF   + W+ +L
Sbjct: 74  PNGSSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQL 133

Query: 109 QRQGNP-NLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
           Q      N  + L+ NK DL ++R+V   +    A + G+ + ETSA +  NV +    +
Sbjct: 134 QANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETL 193

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* Length = 181

 Score =  203 bits (518), Expect = 1e-67
 Identities = 54/159 (33%), Positives = 83/159 (52%), Gaps = 2/159 (1%)

Query: 10  QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ 69
             K+ +LG    GK+SL ++FV+GQF D  + TI    FT+++++N       + DTAGQ
Sbjct: 6   SRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIEN-TFTKLITVNGQEYHLQLVDTAGQ 64

Query: 70  ERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQ-GNPNLIMFLVANKVDLE 128
           + Y      Y       ++VY +TS+ SFE  K    +L    G   + + LV NK DL 
Sbjct: 65  DEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLH 124

Query: 129 EKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
            +R +  EEG+  A+    +FLE+SAK      ++F  I
Sbjct: 125 MERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRI 163

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* Length = 195

 Score =  202 bits (515), Expect = 5e-67
 Identities = 52/167 (31%), Positives = 87/167 (52%), Gaps = 11/167 (6%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEV----------TIKF 61
           K + LGD G GKTS++ ++  G+F     +T+G  F  + +                I  
Sbjct: 13  KFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHL 72

Query: 62  DIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQG-NPNLIMFL 120
            +WDTAG ER+ SL   ++R A   ++++D+T+  SF   + W+ +LQ    + N  + L
Sbjct: 73  QLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVL 132

Query: 121 VANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
             NK DLE++R VK EE    A++ G+ + ETSA +  N++     +
Sbjct: 133 CGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEML 179

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} Length = 169

 Score =  199 bits (509), Expect = 2e-66
 Identities = 40/158 (25%), Positives = 69/158 (43%), Gaps = 2/158 (1%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K++L+G+ G GK++L   F   Q     E       + + + +++  +   ++D   Q  
Sbjct: 4   KVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGD 63

Query: 72  YHSLAP-MYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQ-GNPNLIMFLVANKVDLEE 129
                     +   A ++V+ +T   SF +  + +  L+    + +L + LV NK DL  
Sbjct: 64  AGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLAR 123

Query: 130 KRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
            R+V  EEG   A       +ETSA   HN  ELF   
Sbjct: 124 SREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGA 161

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 196

 Score =  199 bits (508), Expect = 5e-66
 Identities = 56/167 (33%), Positives = 87/167 (52%), Gaps = 4/167 (2%)

Query: 3   RTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFD 62
           ++  K+ +VKL + G  G GK++LV+RF+  +F    + T+ + +     ++++  +  +
Sbjct: 21  QSMAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSME 79

Query: 63  IWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQ-GNPNLIMFLV 121
           I DTAGQE        + R     V+VYDIT   SFE        L       N+ + LV
Sbjct: 80  ILDTAGQEDTIQREG-HMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILV 138

Query: 122 ANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAH-NVNELFYEI 167
            NK DL+  R+V  EEGE  A E   +F E SA +   N+ E+FYE+
Sbjct: 139 GNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYEL 185

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Length = 187

 Score =  198 bits (506), Expect = 1e-65
 Identities = 53/167 (31%), Positives = 99/167 (59%), Gaps = 2/167 (1%)

Query: 2   ARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKF 61
             + N     K++++G  G GK++L L+F+  +F +  E T     + + + L+   ++ 
Sbjct: 10  GGSQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKAD-SYRKKVVLDGEEVQI 68

Query: 62  DIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQR-QGNPNLIMFL 120
           DI DTAGQE Y ++   Y+R     + V+ IT M+SF     + +++ R + + N+   L
Sbjct: 69  DILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLL 128

Query: 121 VANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
           V NK DLE+KR+V  EE +  A++  ++++ETSAK+  NV+++F+++
Sbjct: 129 VGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDL 175

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} Length = 195

 Score =  198 bits (505), Expect = 2e-65
 Identities = 41/169 (24%), Positives = 72/169 (42%), Gaps = 2/169 (1%)

Query: 1   MARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIK 60
           +     K+   K++L+G+ G GK++L   F   Q     E       + + + +++  + 
Sbjct: 14  LYFQGQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVT 73

Query: 61  FDIWDTAGQERYHSLAP-MYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQ-GNPNLIM 118
             ++D   Q            +   A ++V+ +T   SF +  + +  L+    + +L +
Sbjct: 74  LVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPV 133

Query: 119 FLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
            LV NK DL   R+V  EEG   A       +ETSA   HN  ELF   
Sbjct: 134 ILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGA 182

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* Length = 181

 Score =  196 bits (502), Expect = 3e-65
 Identities = 48/157 (30%), Positives = 84/157 (53%), Gaps = 2/157 (1%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           KLV++G  G GK++L ++F++  F    + TI    +T++ S++ +  + DI DTAGQE 
Sbjct: 11  KLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIED-SYTKICSVDGIPARLDILDTAGQEE 69

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQ-GNPNLIMFLVANKVDLEEK 130
           + ++   Y R     ++V+ I    SF    K   ++ R     +  + LV NK DLE +
Sbjct: 70  FGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQ 129

Query: 131 RKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
           R+V   E   +   + +++ E SAK   NV+E F ++
Sbjct: 130 RQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQL 166

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* Length = 168

 Score =  193 bits (493), Expect = 4e-64
 Identities = 52/157 (33%), Positives = 95/157 (60%), Gaps = 2/157 (1%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K++++G  G GK++L L+F+  +F +  E T     + + + L+   ++ DI DTAGQE 
Sbjct: 6   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKAD-SYRKKVVLDGEEVQIDILDTAGQED 64

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQ-GNPNLIMFLVANKVDLEEK 130
           Y ++   Y+R     + V+ IT M+SF     + +++ R   + N+   LV NK DLE+K
Sbjct: 65  YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 124

Query: 131 RKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
           R+V  EE +  A +  ++++ETSAK+  NV+++F+++
Sbjct: 125 RQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDL 161

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Length = 167

 Score =  193 bits (493), Expect = 6e-64
 Identities = 57/159 (35%), Positives = 92/159 (57%), Gaps = 2/159 (1%)

Query: 10  QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ 69
           + K+V+LG  G GK++L ++FV G F +  + TI   F+ + + ++      +I DTAG 
Sbjct: 3   EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIED-FYRKEIEVDSSPSVLEILDTAGT 61

Query: 70  ERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQ-GNPNLIMFLVANKVDLE 128
           E++ S+  +Y +     ++VY + +  SF+  K    ++ R      + + LV NKVDLE
Sbjct: 62  EQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLE 121

Query: 129 EKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
            +R+V + EG   A+E G  F+ETSAKS   V+ELF EI
Sbjct: 122 SEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEI 160

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* Length = 166

 Score =  193 bits (492), Expect = 7e-64
 Identities = 46/157 (29%), Positives = 73/157 (46%), Gaps = 3/157 (1%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K++LLG  G GK++L   F  G     +    G   + + + ++       ++D   Q+ 
Sbjct: 4   KVLLLGAPGVGKSALARIFG-GVEDGPEAEAAGH-TYDRSIVVDGEEASLMVYDIWEQDG 61

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEK 130
              L         A V+VY +T   SFE+A +   +L+R +   ++ + LV NK DL   
Sbjct: 62  GRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRS 121

Query: 131 RKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
           R+V  +EG   A      F+ETSA   HNV  LF  +
Sbjct: 122 REVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGV 158

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Length = 172

 Score =  193 bits (492), Expect = 8e-64
 Identities = 54/158 (34%), Positives = 84/158 (53%), Gaps = 3/158 (1%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           ++ + G  G GK+SLVLRFVKG F +    T+    + QV+S ++      I DT G  +
Sbjct: 5   RVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVED-TYRQVISCDKSICTLQITDTTGSHQ 63

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQR--QGNPNLIMFLVANKVDLEE 129
           + ++  +      A ++VY ITS  S E  K   +++        ++ + LV NK D   
Sbjct: 64  FPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESP 123

Query: 130 KRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
            R+V++ E E  A+    +F+ETSAK  HNV ELF E+
Sbjct: 124 SREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQEL 161

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} Length = 206

 Score =  192 bits (491), Expect = 4e-63
 Identities = 53/168 (31%), Positives = 98/168 (58%), Gaps = 2/168 (1%)

Query: 1   MARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIK 60
             +  N     K++++G  G GK++L L+F+  +F +  E T     + + + L+   ++
Sbjct: 5   KPKGQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKAD-SYRKKVVLDGEEVQ 63

Query: 61  FDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQ-GNPNLIMF 119
            DI DTAGQE Y ++   Y+R     + V+ IT M+SF     + +++ R   + N+   
Sbjct: 64  IDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFL 123

Query: 120 LVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
           LV NK DLE+KR+V  EE +  A++  ++++ETSAK+  NV+++F+++
Sbjct: 124 LVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDL 171

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} Length = 175

 Score =  189 bits (482), Expect = 3e-62
 Identities = 54/159 (33%), Positives = 76/159 (47%), Gaps = 4/159 (2%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           ++VLLGD G GKTSL   F   Q  D     +G   + + L+++       + DT   E+
Sbjct: 6   RVVLLGDPGVGKTSLASLFAGKQERD-LHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEK 64

Query: 72  YHSLAPM--YYRGAAAAVVVYDITSMDSFERAKKWVQELQRQ-GNPNLIMFLVANKVDLE 128
                      +G +A V+VY I    SFE A +   +L+R     ++ + LV NK DL 
Sbjct: 65  LDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLA 124

Query: 129 EKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
             R+V  EEG   A      F+ETSA   HNV ELF  +
Sbjct: 125 RCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFEGV 163

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535

 Score =  199 bits (507), Expect = 5e-62
 Identities = 31/174 (17%), Positives = 64/174 (36%), Gaps = 12/174 (6%)

Query: 2   ARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEV---- 57
                   ++K+ L+GD   GKTSL+ + +   F   +  T G    T+     +     
Sbjct: 33  GEALVHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLEND 92

Query: 58  ----TIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGN 113
                  F  WD  GQE  H+    +   ++  +++ D     +      W++ +++ G 
Sbjct: 93  DELKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSR---TDSNKHYWLRHIEKYG- 148

Query: 114 PNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
               + +V NK+D      ++ ++           F   S K+   V  +   +
Sbjct: 149 GKSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGDGVESIAKSL 202

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* Length = 183

 Score =  188 bits (479), Expect = 1e-61
 Identities = 53/158 (33%), Positives = 88/158 (55%), Gaps = 3/158 (1%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           KLV++GD G GK++L ++F +  F D  + TI    + +   ++      D+ DTAGQE 
Sbjct: 20  KLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIED-SYLKHTEIDNQWAILDVLDTAGQEE 78

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQ-GNPNLIMFLVANKVDLEEK 130
           + ++   Y R     ++VY +T   SFE   ++ Q + R     +  M LVANKVDL   
Sbjct: 79  FSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHL 138

Query: 131 RKVKNEEGELYAQENGLSFLETSAKSAH-NVNELFYEI 167
           RKV  ++G+  A +  + ++ETSAK    NV++ F+++
Sbjct: 139 RKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDL 176

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A Length = 178

 Score =  185 bits (472), Expect = 1e-60
 Identities = 37/170 (21%), Positives = 71/170 (41%), Gaps = 13/170 (7%)

Query: 4   TSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDI 63
           +     +++L +LGD  +GK+SL+ RF+ G +    E T     + + + ++  T    I
Sbjct: 1   SMRSIPELRLGVLGDARSGKSSLIHRFLTGSYQVL-EKTESE-QYKKEMLVDGQTHLVLI 58

Query: 64  WDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQR-----QGNPNLIM 118
            + AG          +   A A + V+ +   +SF+   +   +L       +G   L +
Sbjct: 59  REEAGAPDAK-----FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALAL 113

Query: 119 FLVANKVDLEEKRKVKNEEG-ELYAQENGLSFLETSAKSAHNVNELFYEI 167
               +++     R V +     L A     S+ ET A    NV+ +F E+
Sbjct: 114 VGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEV 163

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 199

 Score =  185 bits (472), Expect = 2e-60
 Identities = 54/163 (33%), Positives = 86/163 (52%), Gaps = 4/163 (2%)

Query: 7   KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDT 66
           ++   ++V+ G  G GK+SLVLRFVKG F D    TI    + QV+S ++      I DT
Sbjct: 5   QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIED-TYRQVISCDKSVCTLQITDT 63

Query: 67  AGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQR--QGNPNLIMFLVANK 124
            G  ++ ++  +      A ++V+ +TS  S E      + + +      ++ + LV NK
Sbjct: 64  TGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNK 123

Query: 125 VDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
            D  + R+V   E +  AQE   +F+ETSAK  +NV ELF E+
Sbjct: 124 CDETQ-REVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQEL 165

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Length = 166

 Score =  184 bits (469), Expect = 2e-60
 Identities = 49/159 (30%), Positives = 89/159 (55%), Gaps = 3/159 (1%)

Query: 10  QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ 69
           + KLV++G  G GK++L ++ ++  F D  + TI    + + + ++  T   DI DTAGQ
Sbjct: 3   EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIED-SYRKQVVIDGETCLLDILDTAGQ 61

Query: 70  ERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQ-GNPNLIMFLVANKVDLE 128
           E Y ++   Y R     + V+ I +  SFE   ++ ++++R   + ++ M LV NK DL 
Sbjct: 62  EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLA 121

Query: 129 EKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
             R V++ + +  A+  G+ ++ETSAK+   V + FY +
Sbjct: 122 A-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Length = 184

 Score =  184 bits (470), Expect = 2e-60
 Identities = 33/174 (18%), Positives = 87/174 (50%), Gaps = 15/174 (8%)

Query: 10  QVKLVLLGDMGTGKTSLVLRFVKGQFFDF--QESTIGAAFFTQVLSLN---EVTIKFDIW 64
           ++KL+++G+ G+GKT+L+ + +K +  D   Q +T+G       + +    +  +  ++W
Sbjct: 2   RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVW 61

Query: 65  DTAGQERYHSLAPMYYRGAAAAVVVYDITSMDS-FERAKKWVQELQRQGNPNLIMFLVAN 123
           D AG+E ++S  P +    A  + VYD++   +  +  K W+  ++ + + + ++ LV  
Sbjct: 62  DFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVI-LVGT 120

Query: 124 KVDLEEKRKVK---NEEGELYAQENGLSFL-----ETSAKSAHNVNELFYEIGD 169
            +D+ ++++ K   ++  +    + G   +       + + +  + +L   I +
Sbjct: 121 HLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIIN 174

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 Length = 211

 Score =  184 bits (469), Expect = 8e-60
 Identities = 50/161 (31%), Positives = 78/161 (48%), Gaps = 7/161 (4%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQF-FDFQESTIGAAFFTQVLSLNEVT---IKFDIWDTA 67
           ++VL+G+ G GK++L   F       D     +G   + + L ++  +   I  D+W+  
Sbjct: 39  RVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENK 98

Query: 68  GQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQ-GNPNLIMFLVANKVD 126
           G+  +  L     +   A ++VY IT   SFE+A +   +L+R     ++ + LV NK D
Sbjct: 99  GENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSD 156

Query: 127 LEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
           L   R+V   EG   A      F+ETSA   HNV ELF  I
Sbjct: 157 LVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGI 197

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} Length = 187

 Score =  182 bits (464), Expect = 2e-59
 Identities = 40/171 (23%), Positives = 77/171 (45%), Gaps = 6/171 (3%)

Query: 1   MARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIK 60
                   ++V L +LG  G GK++L ++F+  +F    +  +    ++   +++   + 
Sbjct: 12  ENLYFQGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLED-TYSSEETVDHQPVH 70

Query: 61  FDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQ---GNPNLI 117
             + DTA  +   +    Y   A A +VVY + S  SF+ +  +++ L         ++ 
Sbjct: 71  LRVMDTADLDTPRNC-ERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIP 129

Query: 118 MFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAK-SAHNVNELFYEI 167
             L+ NK+D+ + R+V   EG   A   G  F E SA     +V  +F+E 
Sbjct: 130 ALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEA 180

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Length = 167

 Score =  181 bits (461), Expect = 3e-59
 Identities = 54/160 (33%), Positives = 95/160 (59%), Gaps = 3/160 (1%)

Query: 10  QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ 69
           + KLV+LG  G GK++L ++FV+G F +  + TI    + + + ++      +I DTAG 
Sbjct: 3   EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIED-SYRKQVEVDCQQCMLEILDTAGT 61

Query: 70  ERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQ-GNPNLIMFLVANKVDLE 128
           E++ ++  +Y +      +VY IT+  +F   +   +++ R     ++ M LV NK DLE
Sbjct: 62  EQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLE 121

Query: 129 EKRKVKNEEGELYAQE-NGLSFLETSAKSAHNVNELFYEI 167
           ++R V  E+G+  A++    +FLE+SAKS  NVNE+FY++
Sbjct: 122 DERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDL 161

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* Length = 189

 Score =  181 bits (461), Expect = 7e-59
 Identities = 50/159 (31%), Positives = 88/159 (55%), Gaps = 3/159 (1%)

Query: 10  QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ 69
           + KLV++G  G GK++L ++ ++  F D  + TI    + + + ++  T   DI DTAGQ
Sbjct: 4   EYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIED-SYRKQVVIDGETCLLDILDTAGQ 62

Query: 70  ERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQ-GNPNLIMFLVANKVDLE 128
           E Y ++   Y R     + V+ I +  SFE    + ++++R   + ++ M LV NK DL 
Sbjct: 63  EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLP 122

Query: 129 EKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
             R V  ++ +  A+  G+ F+ETSAK+   V++ FY +
Sbjct: 123 S-RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTL 160

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* Length = 192

 Score =  181 bits (461), Expect = 7e-59
 Identities = 50/161 (31%), Positives = 78/161 (48%), Gaps = 7/161 (4%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQF-FDFQESTIGAAFFTQVLSLNEVT---IKFDIWDTA 67
           ++VL+G+ G GK++L   F       D     +G   + + L ++  +   I  D+W+  
Sbjct: 8   RVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENK 67

Query: 68  GQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQ-GNPNLIMFLVANKVD 126
           G+  +  L     +   A ++VY IT   SFE+A +   +L+R     ++ + LV NK D
Sbjct: 68  GENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSD 125

Query: 127 LEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
           L   R+V   EG   A      F+ETSA   HNV ELF  I
Sbjct: 126 LVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGI 166

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* Length = 190

 Score =  180 bits (460), Expect = 1e-58
 Identities = 49/159 (30%), Positives = 86/159 (54%), Gaps = 3/159 (1%)

Query: 10  QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ 69
           + KLV++G  G GK++L ++ ++  F D  + TI    + + + ++  T   DI DTAGQ
Sbjct: 21  EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIED-SYRKQVVIDGETCLLDILDTAGQ 79

Query: 70  ERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLE 128
           E Y ++   Y R     + V+ I +  SF     + ++++R + + ++ M LV NK DL 
Sbjct: 80  EEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLP 139

Query: 129 EKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
             R V  ++    A+  G+ F+ETSAK+   V + FY +
Sbjct: 140 T-RTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTL 177

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} Length = 184

 Score =  167 bits (425), Expect = 2e-53
 Identities = 32/169 (18%), Positives = 70/169 (41%), Gaps = 11/169 (6%)

Query: 3   RTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFD 62
               +  ++K+ ++G++ +GK++LV R++ G +   +ES  G   F + + ++  +    
Sbjct: 13  NLYFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQ-EESPEGG-RFKKEIVVDGQSYLLL 70

Query: 63  IWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLI-MFLV 121
           I D  G          +     A V V+ +    SF+    +   L    N + + M LV
Sbjct: 71  IRDEGGPPELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLV 125

Query: 122 ANKVDL--EEKRKVKNEEGELYAQENGL-SFLETSAKSAHNVNELFYEI 167
             +  +     R + +      + +    ++ ET A    NV  +F ++
Sbjct: 126 GTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDV 174

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* Length = 194

 Score =  145 bits (369), Expect = 6e-45
 Identities = 47/169 (27%), Positives = 80/169 (47%), Gaps = 6/169 (3%)

Query: 2   ARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKF 61
            +  N    +K+V++GD   GKT L+L F KG+       T+   F   +          
Sbjct: 15  GKIENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVM-KYKNEEFIL 73

Query: 62  DIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAK-KWVQELQRQGNPNLIMFL 120
            +WDTAGQE Y  L P+ Y  +   ++ + + +  SF+    KW  E+ +         L
Sbjct: 74  HLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEI-KHYIDTAKTVL 132

Query: 121 VANKVDLEE--KRKVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYE 166
           V  KVDL +     V  +EG+   Q+ G ++++E S+ +   +NE+F +
Sbjct: 133 VGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEK 181

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... Length = 201

 Score =  138 bits (350), Expect = 5e-42
 Identities = 57/181 (31%), Positives = 87/181 (48%), Gaps = 17/181 (9%)

Query: 1   MARTSNKN-IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTI 59
           + R S+   I+ KLV++GD   GKT L++ F K QF +    T+    +   + ++   +
Sbjct: 15  VPRGSHMAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFE-NYIADIEVDGKQV 73

Query: 60  KFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAK-KWVQELQRQGNPNLIM 118
           +  +WDTAGQE Y  L P+ Y      ++ + I S DS E    KW  E+ +   PN+ +
Sbjct: 74  ELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPI 132

Query: 119 FLVANKVDLEEKRK------------VKNEEGELYAQENG-LSFLETSAKSAHNVNELFY 165
            LV NK DL +               V++EEG   A       +LE SAK+   V E+F 
Sbjct: 133 ILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFE 192

Query: 166 E 166
            
Sbjct: 193 M 193

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C Length = 182

 Score =  137 bits (346), Expect = 1e-41
 Identities = 51/175 (29%), Positives = 86/175 (49%), Gaps = 14/175 (8%)

Query: 4   TSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDI 63
           + + +  +K V +GD   GKT L++ +    F      T+   F   V  +N  T+   +
Sbjct: 2   SMSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANV-VVNGATVNLGL 60

Query: 64  WDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVA 122
           WDTAGQE Y+ L P+ YRGA   ++ + + S  S+E    KW+ EL +   P + + LV 
Sbjct: 61  WDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPEL-KHYAPGVPIVLVG 119

Query: 123 NKVDLEEKRK----------VKNEEGELYAQENG-LSFLETSAKSAHNVNELFYE 166
            K+DL + ++          +   +GE   +  G  +++E S+KS  NV  +F  
Sbjct: 120 TKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDA 174

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} Length = 212

 Score =  138 bits (349), Expect = 1e-41
 Identities = 50/166 (30%), Positives = 85/166 (51%), Gaps = 12/166 (7%)

Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +K V +GD   GKT +++ +   +F      T+   F   V +++   +   +WDTAGQE
Sbjct: 10  IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANV-AVDGQIVNLGLWDTAGQE 68

Query: 71  RYHSLAPMYYRGAAAAVVVYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
            Y  L P+ YRGA   V+ + + S  S+E    KW+ EL R+  PN+ + LV  K+DL +
Sbjct: 69  DYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPEL-RRFAPNVPIVLVGTKLDLRD 127

Query: 130 --------KRKVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYE 166
                      + + +GE   ++ G  +++E S+K+  NV  +F  
Sbjct: 128 DKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDT 173

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} Length = 214

 Score =  137 bits (348), Expect = 2e-41
 Identities = 51/170 (30%), Positives = 86/170 (50%), Gaps = 16/170 (9%)

Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           VK+VL+GD G GKTSL++ F  G F +    T+   +   +  +    +   IWDTAGQ+
Sbjct: 35  VKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNL-QVKGKPVHLHIWDTAGQD 93

Query: 71  RYHSLAPMYYRGAAAAVVVYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
            Y  L P++Y  A+  ++ +D+TS +SF+    +W  E+       + + +V  K DL +
Sbjct: 94  DYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEV-NHFCKKVPIIVVGCKTDLRK 152

Query: 130 KRK------------VKNEEGELYAQENG-LSFLETSAKSAHNVNELFYE 166
            +             V    G+  A+  G +++LE SA+   NV+ +F E
Sbjct: 153 DKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQE 202

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} Length = 204

 Score =  136 bits (345), Expect = 3e-41
 Identities = 48/180 (26%), Positives = 80/180 (44%), Gaps = 16/180 (8%)

Query: 1   MARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIK 60
           M     +   +K V++GD   GKT L++ +    F      T+   +   V  ++   + 
Sbjct: 21  MENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANV-MVDGKPVN 79

Query: 61  FDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAK-KWVQELQRQGNPNLIMF 119
             +WDTAGQE Y  L P+ Y      ++ + + S  SFE  + KW  E+ R   PN  + 
Sbjct: 80  LGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPII 138

Query: 120 LVANKVDLEEKRK------------VKNEEGELYAQENG-LSFLETSAKSAHNVNELFYE 166
           LV  K+DL + +             +   +G   A+E G + +LE SA +   +  +F E
Sbjct: 139 LVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 198

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 207

 Score =  136 bits (343), Expect = 6e-41
 Identities = 53/177 (29%), Positives = 83/177 (46%), Gaps = 16/177 (9%)

Query: 4   TSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDI 63
                I+ KLV++GD   GKT L++ F K +F +    T+   +   +  ++   ++  +
Sbjct: 19  YFQSMIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADI-EVDGKQVELAL 77

Query: 64  WDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVA 122
           WDTAGQE Y  L P+ Y      ++ + + S DS E    KWV E+ +   PN+ + LVA
Sbjct: 78  WDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEV-KHFCPNVPIILVA 136

Query: 123 NKVDLEEKRK------------VKNEEGELYAQENG-LSFLETSAKSAHNVNELFYE 166
           NK DL                 V+ ++G   A       +LE SAK+   V E+F  
Sbjct: 137 NKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFET 193

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} Length = 201

 Score =  134 bits (339), Expect = 2e-40
 Identities = 51/171 (29%), Positives = 78/171 (45%), Gaps = 16/171 (9%)

Query: 10  QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ 69
            VK VL+GD   GKTSLV+ +    +      T    F   V S++   ++  + DTAGQ
Sbjct: 20  GVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVV-SVDGRPVRLQLCDTAGQ 78

Query: 70  ERYHSLAPMYYRGAAAAVVVYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLE 128
           + +  L P+ Y      ++ + + S  SF+    KWV E+ R   P   + LV  + DL 
Sbjct: 79  DEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEI-RCHCPKAPIILVGTQSDLR 137

Query: 129 EKRK------------VKNEEGELYAQENG-LSFLETSAKSAHNVNELFYE 166
           E  K            V  E  +L A+E    S++E SA +  N+ E+F  
Sbjct: 138 EDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDA 188

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* Length = 184

 Score =  132 bits (334), Expect = 7e-40
 Identities = 47/177 (26%), Positives = 88/177 (49%), Gaps = 17/177 (9%)

Query: 5   SNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIW 64
           SN+N++ K+V++GD   GKT+L+  F K  F +    T+   +      ++   I+  +W
Sbjct: 2   SNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASF-EIDTQRIELSLW 60

Query: 65  DTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVAN 123
           DT+G   Y ++ P+ Y  + A ++ +DI+  ++ +    KW  E+ ++  PN  M LV  
Sbjct: 61  DTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEI-QEFCPNTKMLLVGC 119

Query: 124 KVDLEEKRK------------VKNEEGELYAQENG-LSFLETSAKSAHN-VNELFYE 166
           K DL                 V  ++G   A++ G  +++E SA  + N V ++F+ 
Sbjct: 120 KSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHV 176

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 Length = 194

 Score =  130 bits (328), Expect = 8e-39
 Identities = 44/177 (24%), Positives = 83/177 (46%), Gaps = 20/177 (11%)

Query: 7   KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAF--FTQVLSLNEVTIKFDIW 64
             + +K V++GD   GKT L++ +    F +    T+   F  +   +++        ++
Sbjct: 15  GALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV---FDHYAVSVTVGGKQYLLGLY 71

Query: 65  DTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVAN 123
           DTAGQE Y  L P+ Y      ++ + + +  SF+  K +WV EL ++  PN+   L+  
Sbjct: 72  DTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPEL-KEYAPNVPFLLIGT 130

Query: 124 KVDLEEKRK------------VKNEEGELYAQENG-LSFLETSAKSAHNVNELFYEI 167
           ++DL +  K            +  E+G+  A+E G   ++E SA +   +  +F E 
Sbjct: 131 QIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEA 187

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... Length = 186

 Score =  129 bits (326), Expect = 1e-38
 Identities = 47/172 (27%), Positives = 79/172 (45%), Gaps = 16/172 (9%)

Query: 9   IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAG 68
             +K V++GD   GKT L++ +    F      T+   +   V  ++   +   +WDTAG
Sbjct: 4   QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANV-MVDGKPVNLGLWDTAG 62

Query: 69  QERYHSLAPMYYRGAAAAVVVYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDL 127
           QE Y  L P+ Y     +++ + + S  SFE  + KW  E+ R   PN  + LV  K+DL
Sbjct: 63  QEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDL 121

Query: 128 EEKRK------------VKNEEGELYAQENG-LSFLETSAKSAHNVNELFYE 166
            + +             +   +G   A+E G + +LE SA +   +  +F E
Sbjct: 122 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 173

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 Length = 205

 Score =  128 bits (323), Expect = 6e-38
 Identities = 46/180 (25%), Positives = 87/180 (48%), Gaps = 17/180 (9%)

Query: 2   ARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKF 61
               N+N++ K+V++GD   GKT+L+  F K  F +    T+   +      ++   I+ 
Sbjct: 20  HMDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASF-EIDTQRIEL 78

Query: 62  DIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAK-KWVQELQRQGNPNLIMFL 120
            +WDT+G   Y ++ P+ Y  + A ++ +DI+  ++ +    KW  E+ ++  PN  M L
Sbjct: 79  SLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEI-QEFCPNTKMLL 137

Query: 121 VANKVDLEEKRK------------VKNEEGELYAQENG-LSFLETSAKSAHN-VNELFYE 166
           V  K DL                 V  ++G   A++ G  +++E SA  + N V ++F+ 
Sbjct: 138 VGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHV 197

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* Length = 214

 Score =  123 bits (309), Expect = 1e-35
 Identities = 42/178 (23%), Positives = 81/178 (45%), Gaps = 17/178 (9%)

Query: 4   TSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDI 63
                 + KLVL+GD+  GKT+++    K  + +    T+   +   +    E  ++  +
Sbjct: 21  PQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACL-ETEEQRVELSL 79

Query: 64  WDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERA-KKWVQELQRQGNPNLIMFLVA 122
           WDT+G   Y ++ P+ Y  + A ++ +DI+  ++ + A KKW  E+     P+  + L+ 
Sbjct: 80  WDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEI-LDYCPSTRVLLIG 138

Query: 123 NKVDLEEKRK------------VKNEEGELYAQENG-LSFLETSAK-SAHNVNELFYE 166
            K DL                 +  E+G   A++ G   +LE SA  S  +++ +F  
Sbjct: 139 CKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRT 196

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} Length = 255

 Score =  101 bits (253), Expect = 4e-27
 Identities = 29/147 (19%), Positives = 57/147 (38%), Gaps = 9/147 (6%)

Query: 29  RFVKGQFFDFQESTIGAAFFTQVLSLNEVT---IKFDIWDTAGQERY--HSLAPMYYRGA 83
            F+  Q F    ST    +  +  +    +   + +   D  G E+       P      
Sbjct: 104 EFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLV 163

Query: 84  AAAVVVYDITSMD--SFERAKKWVQELQRQ-GNPNLIMFLVANKVDLEEKRKVKNEEGEL 140
              ++  D++     +F+   K+V  L  Q       + +V  K D   +R +++     
Sbjct: 164 DGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDAHTFA 223

Query: 141 YAQENGLSFLETSAKSAHNVNELFYEI 167
            +++N L  +ETSA+S  NV+  F  +
Sbjct: 224 LSKKN-LQVVETSARSNVNVDLAFSTL 249

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* Length = 332

 Score = 95.8 bits (238), Expect = 3e-24
 Identities = 45/180 (25%), Positives = 76/180 (42%), Gaps = 16/180 (8%)

Query: 1   MARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIK 60
                     +K V++GD   GKT L++ +    F      T+   +   V  ++   + 
Sbjct: 146 ENIDEAAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANV-MVDGKPVN 204

Query: 61  FDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAK-KWVQELQRQGNPNLIMF 119
             +WDTAG E Y  L P+ Y      ++ + + S  SF   + KW  E+ R   PN  + 
Sbjct: 205 LGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEV-RHHCPNTPII 263

Query: 120 LVANKVDLEEKRK------------VKNEEGELYAQENG-LSFLETSAKSAHNVNELFYE 166
           LV  K+DL + +             +   +G   A+E G + +LE SA +   +  +F E
Sbjct: 264 LVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 323

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* Length = 196

 Score = 78.1 bits (192), Expect = 2e-18
 Identities = 40/184 (21%), Positives = 77/184 (41%), Gaps = 24/184 (13%)

Query: 3   RTSNKNIQVKLVLLGDMGTGKTSLV-LRFVKGQFFD--FQESTIGAAFFTQVLSLNEVTI 59
               +  + +++L+G   +GK+S+  + F K    +  F EST       +    N   +
Sbjct: 13  NLYFQGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNK---IYKDDISNSSFV 69

Query: 60  KFDIWDTAGQERYHSLAP---MYYRGAAAAVVVYDITS--MDSFERAKKWVQELQRQGNP 114
            F IWD  GQ  +        M +RG  A + V D     M++  R    V +  +  NP
Sbjct: 70  NFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKV-NP 128

Query: 115 NLIMFLVANKVDL--EEKR---------KVKNEEGELYAQENGLSFLETSAKSAHNVNEL 163
           ++   +  +KVD   ++ +         +  ++  +   ++  LSF  TS    H++ E 
Sbjct: 129 DMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSFYLTSIYD-HSIFEA 187

Query: 164 FYEI 167
           F ++
Sbjct: 188 FSKV 191

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198

 Score = 74.4 bits (183), Expect = 3e-17
 Identities = 34/177 (19%), Positives = 64/177 (36%), Gaps = 19/177 (10%)

Query: 5   SNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQES-----------TIGAAFFT-QVL 52
           +N+ I  K+V  G   +GKT+  L+++  +  + ++            T+   F    + 
Sbjct: 9   ANREINFKIVYYGPGLSGKTTN-LKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIG 67

Query: 53  SLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKW---VQELQ 109
            +     +F ++   GQ  Y++   +  RG    V V D         A+      + L 
Sbjct: 68  EVKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLA 127

Query: 110 RQG-NPNLIMFLV-ANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELF 164
             G   + +  ++  NK DL +   V+     +   E     LE  A     V E  
Sbjct: 128 EYGLTLDDVPIVIQVNKRDLPDALPVE-MVRAVVDPEGKFPVLEAVATEGKGVFETL 183

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 307

 Score = 75.8 bits (186), Expect = 4e-17
 Identities = 32/167 (19%), Positives = 72/167 (43%), Gaps = 15/167 (8%)

Query: 9   IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSL-NEVTIKFDIWDTA 67
           +  KL+L+G  G+GK+S+    +   +  F    +GA    +   L     +  ++WD  
Sbjct: 2   LGSKLLLMGRSGSGKSSM-RSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCG 60

Query: 68  GQERY-----HSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQ--RQGNPNLIMFL 120
           GQ+ +            ++     + V+D+ S +  +  + + + L+  R+ +P+  +F+
Sbjct: 61  GQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFV 120

Query: 121 VANKVDL------EEKRKVKNEEGELYAQENGLSFLETSAKSAHNVN 161
           + +K+DL      EE  ++  +     + E G   L     S  + +
Sbjct: 121 LLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWDES 167

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 331

 Score = 61.2 bits (148), Expect = 9e-12
 Identities = 33/173 (19%), Positives = 65/173 (37%), Gaps = 24/173 (13%)

Query: 13  LVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVT--IKFDIWDTAGQE 70
           ++L+G    GK+S+  + V           + +   T   SL   +  I   + +  GQ 
Sbjct: 2   VLLMGVRRCGKSSI-CKVVFHNMQPLDTLYLES---TSNPSLEHFSTLIDLAVMELPGQL 57

Query: 71  RYHSLA---PMYYRGAAAAVVVYDITS--MDSFERAKKWVQELQRQGNPNLIMFLVANKV 125
            Y   +      ++   A V V D     +++       ++    + NP++ + ++ +KV
Sbjct: 58  NYFEPSYDSERLFKSVGALVYVIDSQDEYINAITNLAMIIEYAY-KVNPSINIEVLIHKV 116

Query: 126 DL-----------EEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
           D            +  ++   E  EL      +SF  TS    H++ E F  I
Sbjct: 117 DGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIFD-HSIYEAFSRI 168

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* Length = 188

 Score = 58.7 bits (143), Expect = 2e-11
 Identities = 37/129 (28%), Positives = 58/129 (44%), Gaps = 17/129 (13%)

Query: 7   KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDT 66
              +++L L+G   +GKT+ V     GQF +    T+G   F  +  + +  +   +WD 
Sbjct: 19  SKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG---FN-MRKITKGNVTIKLWDI 74

Query: 67  AGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQR-------QGNPNLIMF 119
            GQ R+ S+   Y RG +A V + D    +  E +K    EL         QG P L++ 
Sbjct: 75  GGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASK---NELHNLLDKPQLQGIPVLVL- 130

Query: 120 LVANKVDLE 128
              NK DL 
Sbjct: 131 --GNKRDLP 137

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... Length = 164

 Score = 55.7 bits (135), Expect = 2e-10
 Identities = 31/123 (25%), Positives = 54/123 (43%), Gaps = 12/123 (9%)

Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           ++++++G    GKT+++ +   G+       TIG  F  + +      I F +WD  GQ+
Sbjct: 1   MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETVEYK--NISFTVWDVGGQD 55

Query: 71  RYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQ-GNPNL--IMFLV-ANKVD 126
           +   L   Y++     + V D    +    A+   +EL R      L   + LV ANK D
Sbjct: 56  KIRPLWRHYFQNTQGLIFVVDSNDRERVNEAR---EELMRMLAEDELRDAVLLVFANKQD 112

Query: 127 LEE 129
           L  
Sbjct: 113 LPN 115

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 Length = 214

 Score = 56.7 bits (137), Expect = 2e-10
 Identities = 29/130 (22%), Positives = 49/130 (37%), Gaps = 11/130 (8%)

Query: 5   SNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIW 64
           + K+ Q  ++ +G   +GKT L +R + GQ+ D Q ++I  +        N       + 
Sbjct: 2   ARKSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQ-TSITDSSAI-YKVNNNRGNSLTLI 59

Query: 65  DTAGQERY-HSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQR-----QGNPNLIM 118
           D  G E     L   +   A A V V D  +     +     + L +         N   
Sbjct: 60  DLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVA--EFLYQVLIDSMALKNSPS 117

Query: 119 FLV-ANKVDL 127
            L+  NK D+
Sbjct: 118 LLIACNKQDI 127

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 183

 Score = 56.1 bits (136), Expect = 2e-10
 Identities = 38/127 (29%), Positives = 55/127 (43%), Gaps = 12/127 (9%)

Query: 6   NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWD 65
             N ++++++LG  G GKT+++ R   G+    +  TIG  F  + LS     +K ++WD
Sbjct: 14  GSNKELRILILGLDGAGKTTILYRLQIGEVVTTK-PTIG--FNVETLSYK--NLKLNVWD 68

Query: 66  TAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQ-GNPNL--IMFLV- 121
             GQ         YY   AA + V D T  D    A    +EL        L     LV 
Sbjct: 69  LGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTAS---KELHLMLQEEELQDAALLVF 125

Query: 122 ANKVDLE 128
           ANK D  
Sbjct: 126 ANKQDQP 132

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 187

 Score = 55.3 bits (134), Expect = 4e-10
 Identities = 32/127 (25%), Positives = 55/127 (43%), Gaps = 18/127 (14%)

Query: 10  QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ 69
           + K++++G    GKT+++ +F   +       TIG     + + +N    +F +WD  GQ
Sbjct: 16  EHKVIIVGLDNAGKTTILYQFSMNEVVHTS-PTIG--SNVEEIVIN--NTRFLMWDIGGQ 70

Query: 70  ERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQR-------QGNPNLIMFLVA 122
           E   S    YY      +VV D T  +     +   +EL +       +    LI    A
Sbjct: 71  ESLRSSWNTYYTNTEFVIVVVDSTDRERISVTR---EELYKMLAHEDLRKAGLLIF---A 124

Query: 123 NKVDLEE 129
           NK D++E
Sbjct: 125 NKQDVKE 131

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} Length = 190

 Score = 55.0 bits (133), Expect = 5e-10
 Identities = 31/132 (23%), Positives = 59/132 (44%), Gaps = 14/132 (10%)

Query: 5   SNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQES-TIGAAFFTQVLSLNEVTIKFDI 63
              + +V ++ LG   +GKT+++ +             TIG   F+ +      ++ F +
Sbjct: 16  PRGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG---FS-IEKFKSSSLSFTV 71

Query: 64  WDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQ------ELQRQGNPNLI 117
           +D +GQ RY +L   YY+   A + V D +       AK+ +       +++ +  P L 
Sbjct: 72  FDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILF 131

Query: 118 MFLVANKVDLEE 129
               ANK+DL +
Sbjct: 132 F---ANKMDLRD 140

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} Length = 189

 Score = 54.9 bits (133), Expect = 5e-10
 Identities = 34/124 (27%), Positives = 51/124 (41%), Gaps = 12/124 (9%)

Query: 10  QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ 69
           ++++++LG    GKTS++ R   G        T+G     + L      I F++WD  GQ
Sbjct: 22  KIRVLMLGLDNAGKTSILYRLHLGDVVTTV-PTVG--VNLETLQYK--NISFEVWDLGGQ 76

Query: 70  ERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQ-GNPNL--IMFLV-ANKV 125
                    Y+    A + V D T  D    AK    EL        L   + L+ ANK 
Sbjct: 77  TGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAK---HELYALLDEDELRKSLLLIFANKQ 133

Query: 126 DLEE 129
           DL +
Sbjct: 134 DLPD 137

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* Length = 186

 Score = 54.9 bits (133), Expect = 5e-10
 Identities = 33/129 (25%), Positives = 51/129 (39%), Gaps = 18/129 (13%)

Query: 7   KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDT 66
           K  +++L++LG    GKT+++ +F           T+G  F  + L       K +IWD 
Sbjct: 15  KERELRLLMLGLDNAGKTTILKKFNGEDVDTIS-PTLG--FNIKTLEHR--GFKLNIWDV 69

Query: 67  AGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQR-------QGNPNLIMF 119
            GQ+   S    Y+      + V D       +  +   +ELQ         G   LI  
Sbjct: 70  GGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQ---RELQSLLVEERLAGATLLIF- 125

Query: 120 LVANKVDLE 128
             ANK DL 
Sbjct: 126 --ANKQDLP 132

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* Length = 181

 Score = 54.9 bits (133), Expect = 5e-10
 Identities = 32/129 (24%), Positives = 58/129 (44%), Gaps = 12/129 (9%)

Query: 5   SNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIW 64
              + + K++++G    GKT+++ +F   +       TIG     + + +N    +F +W
Sbjct: 16  PRGSQEHKVIIVGLDNAGKTTILYQFSMNEVVH-TSPTIG--SNVEEIVIN--NTRFLMW 70

Query: 65  DTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQ-GNPNL--IMFLV 121
           D  GQE   S    YY      +VV D T  +     +   +EL +   + +L     L+
Sbjct: 71  DIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTR---EELYKMLAHEDLRKAGLLI 127

Query: 122 -ANKVDLEE 129
            ANK D++E
Sbjct: 128 FANKQDVKE 136

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* Length = 192

 Score = 54.2 bits (131), Expect = 8e-10
 Identities = 28/127 (22%), Positives = 54/127 (42%), Gaps = 18/127 (14%)

Query: 10  QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ 69
           Q++++++G    GKT+++ +   G+       TIG  F  + +      I F +WD  GQ
Sbjct: 29  QMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIG--FNVETVEYK--NICFTVWDVGGQ 83

Query: 70  ERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQR-------QGNPNLIMFLVA 122
           ++   L   Y++     + V D    +  + +     ELQ+       +    L+    A
Sbjct: 84  DKIRPLWRHYFQNTQGLIFVVDSNDRERVQESA---DELQKMLQEDELRDAVLLVF---A 137

Query: 123 NKVDLEE 129
           NK D+  
Sbjct: 138 NKQDMPN 144

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* Length = 181

 Score = 54.1 bits (131), Expect = 8e-10
 Identities = 33/131 (25%), Positives = 48/131 (36%), Gaps = 18/131 (13%)

Query: 5   SNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIW 64
           S  + +V+++LLG    GKT+L+ +            T G  F  + +       K ++W
Sbjct: 11  SAPDQEVRILLLGLDNAGKTTLLKQLASEDISH-ITPTQG--FNIKSVQSQ--GFKLNVW 65

Query: 65  DTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQR-------QGNPNLI 117
           D  GQ +       Y+      + V D      FE      QEL            P LI
Sbjct: 66  DIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETG---QELTELLEEEKLSCVPVLI 122

Query: 118 MFLVANKVDLE 128
               ANK DL 
Sbjct: 123 F---ANKQDLL 130

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* Length = 171

 Score = 54.1 bits (131), Expect = 8e-10
 Identities = 34/123 (27%), Positives = 53/123 (43%), Gaps = 12/123 (9%)

Query: 10  QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ 69
           ++++++LG  G GKT+++ R   G+       TIG   F  V ++    +KF +WD  G 
Sbjct: 7   EMRILILGLDGAGKTTILYRLQVGEVVTTI-PTIG---FN-VETVTYKNLKFQVWDLGGL 61

Query: 70  ERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQ-GNPNL--IMFLV-ANKV 125
                    YY    A + V D    D    +K    EL        L   + +V ANK 
Sbjct: 62  TSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISK---SELVAMLEEEELRKAILVVFANKQ 118

Query: 126 DLE 128
           D+E
Sbjct: 119 DME 121

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 218

 Score = 54.4 bits (131), Expect = 1e-09
 Identities = 21/132 (15%), Positives = 43/132 (32%), Gaps = 15/132 (11%)

Query: 5   SNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIW 64
             K+ Q  +++ G   +GKTSL+              +        + + +       + 
Sbjct: 7   KQKSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTV-VSQEP-----LSAADYDGSGVTLV 60

Query: 65  DTAGQERYHSLAPMYYRGAAAAV--VVYDITSMDSFERAKKWVQELQR------QGNPNL 116
           D  G  +       Y +  A  V  +++ + S    ++     + L            N 
Sbjct: 61  DFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENG 120

Query: 117 IMFLV-ANKVDL 127
           I  L+  NK +L
Sbjct: 121 IDILIACNKSEL 132

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* Length = 198

 Score = 53.8 bits (130), Expect = 1e-09
 Identities = 25/127 (19%), Positives = 46/127 (36%), Gaps = 12/127 (9%)

Query: 7   KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDT 66
                KLV LG    GKT+L+      +       T+     ++ L++    + F  +D 
Sbjct: 22  YKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHV-PTLH--PTSEELTIA--GMTFTTFDL 76

Query: 67  AGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQ-GNPNL--IMFLV-A 122
            G  +   +   Y       V + D    +    +K   +EL     +  +  +  L+  
Sbjct: 77  GGHIQARRVWKNYLPAINGIVFLVDCADHERLLESK---EELDSLMTDETIANVPILILG 133

Query: 123 NKVDLEE 129
           NK+D  E
Sbjct: 134 NKIDRPE 140

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* Length = 190

 Score = 53.0 bits (128), Expect = 2e-09
 Identities = 32/130 (24%), Positives = 47/130 (36%), Gaps = 20/130 (15%)

Query: 7   KNIQVKLVLLG-DMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWD 65
            N   KL+ LG D   GKT+L+      +    Q  T      T    L    IKF  +D
Sbjct: 20  WNKHGKLLFLGLD-NAGKTTLLHMLKNDRLATLQ-PTWH---PT-SEELAIGNIKFTTFD 73

Query: 66  TAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQR-------QGNPNLIM 118
             G  +   L   Y+      V + D    + F+ A+    EL         +  P +I+
Sbjct: 74  LGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEAR---VELDALFNIAELKDVPFVIL 130

Query: 119 FLVANKVDLE 128
               NK+D  
Sbjct: 131 ---GNKIDAP 137

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} Length = 193

 Score = 52.8 bits (127), Expect = 4e-09
 Identities = 20/132 (15%), Positives = 42/132 (31%), Gaps = 15/132 (11%)

Query: 5   SNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIW 64
              + Q  +++ G   +GKTSL+              +        + + +       + 
Sbjct: 43  GGGSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTV-VSQE-----PLSAADYDGSGVTLV 96

Query: 65  DTAGQERYHSLAPMYYRGAAAAV--VVYDITSMDSFERAKKWVQELQR------QGNPNL 116
           D  G  +       Y +  A  V  +++ + S    ++     + L            N 
Sbjct: 97  DFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENG 156

Query: 117 IMFLV-ANKVDL 127
           I  L+  NK +L
Sbjct: 157 IDILIACNKSEL 168

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Length = 329

 Score = 44.5 bits (105), Expect = 5e-06
 Identities = 20/77 (25%), Positives = 31/77 (40%), Gaps = 13/77 (16%)

Query: 59  IKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQR-------Q 111
           I F +WD  GQ++   L   Y++     + V D    +    A+   +EL R       +
Sbjct: 209 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAR---EELMRMLAEDELR 265

Query: 112 GNPNLIMFLVANKVDLE 128
               L+    ANK DL 
Sbjct: 266 DAVLLVF---ANKQDLP 279

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana} Length = 423

 Score = 41.6 bits (98), Expect = 5e-05
 Identities = 18/108 (16%), Positives = 33/108 (30%), Gaps = 11/108 (10%)

Query: 65  DTAGQERYHSLAPMYYRGAAAA-----VVVYDITSMDSFERAKKWVQELQRQGNPNLIMF 119
           DT G +    L  +    A          +  +T           V   +    P     
Sbjct: 89  DTPGLDDVGELGRLRVEKARRVFYRADCGIL-VTDSAPTPYEDDVVNLFKEMEIP---FV 144

Query: 120 LVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
           +V NK+D+  ++  + +   LY        L  SA      +++   I
Sbjct: 145 VVVNKIDVLGEKAEELK--GLYESRYEAKVLLVSALQKKGFDDIGKTI 190

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.0 bits (95), Expect = 1e-04
 Identities = 32/196 (16%), Positives = 58/196 (29%), Gaps = 53/196 (27%)

Query: 5   SNKNIQVKLVLLGDMGTGKTSL---VLRFVKGQ-FFDFQES--TIG------------AA 46
             KN+    ++ G +G+GKT +   V    K Q   DF+     +               
Sbjct: 149 PAKNV----LIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK 204

Query: 47  FFTQV------LSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVV---VYDITSMDS 97
              Q+       S +   IK  I     + R    +  Y       +V   V +  + ++
Sbjct: 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN---CLLVLLNVQNAKAWNA 261

Query: 98  FE-RAKKWVQELQRQGNPNLIMFLVANK---VDLEEKRKV--KNEEGELYAQENGLSFLE 151
           F    K  +    R     +  FL A     + L+        +E   L  +     +L+
Sbjct: 262 FNLSCKILL--TTR--FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK-----YLD 312

Query: 152 TSAKS----AHNVNEL 163
              +         N  
Sbjct: 313 CRPQDLPREVLTTNPR 328

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* Length = 476

 Score = 39.1 bits (92), Expect = 4e-04
 Identities = 14/88 (15%), Positives = 29/88 (32%), Gaps = 5/88 (5%)

Query: 83  AAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYA 142
           A   + + D+ +    +   +  +          +   VANK+D        +      A
Sbjct: 313 ADLILYLLDLGTERLDDELTEIRELKAAHPAAKFL--TVANKLDRAAN---ADALIRAIA 367

Query: 143 QENGLSFLETSAKSAHNVNELFYEIGDC 170
              G   +  SA +   ++ L   +GD 
Sbjct: 368 DGTGTEVIGISALNGDGIDTLKQHMGDL 395

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	178
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	100.0
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	100.0
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	100.0
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	100.0
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	100.0
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	100.0
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	100.0
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	100.0
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	100.0
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	100.0
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	100.0
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	100.0
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	100.0
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	100.0
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	100.0
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	100.0
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	100.0
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	100.0
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	100.0
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	100.0
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	100.0
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	100.0
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	100.0
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	100.0
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	100.0
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	100.0
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	100.0
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	100.0
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	100.0
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	100.0
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	100.0
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	100.0
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	100.0
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	100.0
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	100.0
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	100.0
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	100.0
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	100.0
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	100.0
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	100.0
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	100.0
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	100.0
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	100.0
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	100.0
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	100.0
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	100.0
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	100.0
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	100.0
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	100.0
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	100.0
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	100.0
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	100.0
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	100.0
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	100.0
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	100.0
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	100.0
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	100.0
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	100.0
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	100.0
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	100.0
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	100.0
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	100.0
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	100.0
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	100.0
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	100.0
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	100.0
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	100.0
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	100.0
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	100.0
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	100.0
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	100.0
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	100.0
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	100.0
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	100.0
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	100.0
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	100.0
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	100.0
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	100.0
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	100.0
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	100.0
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	100.0
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	100.0
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	100.0
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	100.0
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	100.0
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	100.0
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	100.0
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	100.0
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	100.0
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	100.0
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	100.0
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	100.0
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	100.0
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	100.0
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	100.0
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	100.0
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	100.0
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	99.98
3llu_A	196	RAS-related GTP-binding protein C; structural geno	99.98
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	99.97
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.97
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	99.97
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.97
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.97
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.97
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.97
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.97
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.97
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.96
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.96
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	99.96
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	99.96
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.96
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.96
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.96
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	99.96
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.96
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	99.95
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	99.95
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.95
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.95
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	99.95
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.94
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.94
1nrj_B	218	SR-beta, signal recognition particle receptor beta	99.94
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.93
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.93
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.93
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.93
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	99.93
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	99.92
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	99.92
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	99.92
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	99.92
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	99.92
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	99.92
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.91
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	99.91
1wb1_A	482	Translation elongation factor SELB; selenocysteine	99.91
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	99.91
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	99.91
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	99.91
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	99.91
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	99.9
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	99.9
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	99.9
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.9
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	99.9
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	99.9
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	99.9
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	99.9
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	99.9
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	99.9
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.9
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	99.89
2ged_A	193	SR-beta, signal recognition particle receptor beta	99.89
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	99.89
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	99.89
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	99.89
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	99.89
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	99.89
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	99.88
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	99.88
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	99.88
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	99.88
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	99.88
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.88
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	99.87
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	99.87
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	99.87
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	99.86
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	99.86
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.85
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	99.85
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	99.84
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	99.84
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.83
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	99.83
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	99.82
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	99.82
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	99.82
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	99.81
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.81
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	99.81
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	99.81
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	99.81
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.8
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	99.8
1wxq_A	397	GTP-binding protein; structural genomics, riken st	99.79
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.79
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	99.75
2hf9_A	226	Probable hydrogenase nickel incorporation protein	99.74
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	99.74
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	99.73
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	99.72
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	99.7
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	99.69
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	99.68
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	99.68
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	99.66
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	99.64
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	99.62
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	99.62
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	99.62
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	99.6
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	99.58
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	99.57
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	99.55
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	99.54
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	99.45
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	99.44
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	99.43
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	99.14
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	99.11
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	99.1
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	99.09
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	99.07
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	99.01
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	99.0
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.98
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	98.95
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.81
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.74
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	98.58
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.5
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	98.49
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	98.45
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	98.36
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	98.34
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	98.34
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	98.3
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	98.21
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	98.18
3q5d_A	447	Atlastin-1; G protein, GTPase, GDP/GTP binding, hy	97.95
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	97.91
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	97.78
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	97.75
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	97.73
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	97.72
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	97.7
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	97.68
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	97.63
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	97.62
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	97.61
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	97.61
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	97.6
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	97.59
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	97.59
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	97.58
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	97.56
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	97.56
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	97.54
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	97.52
2xxa_A	433	Signal recognition particle protein; protein trans	97.52
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	97.51
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	97.51
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	97.51
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	97.5
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	97.5
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	97.5
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	97.49
3cwq_A	209	Para family chromosome partitioning protein; alpha	97.48
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	97.47
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	97.47
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	97.46
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	97.46
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	97.45
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	97.45
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	97.45
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	97.43
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	97.43
1sgw_A	214	Putative ABC transporter; structural genomics, P p	97.41
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	97.41
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.41
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	97.4
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	97.4
1b0u_A	262	Histidine permease; ABC transporter, transport pro	97.39
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	97.39
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	97.39
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	97.39
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	97.38
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	97.38
1g6h_A	257	High-affinity branched-chain amino acid transport	97.37
2eyu_A	261	Twitching motility protein PILT; pilus retraction	97.37
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	97.37
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	97.37
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	97.37
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	97.36
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	97.36
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	97.36
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	97.36
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	97.36
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	97.35
1ji0_A	240	ABC transporter; ATP binding protein, structural g	97.35
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	97.35
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	97.35
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	97.34
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	97.34
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	97.34
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	97.34
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	97.33
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	97.33
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	97.33
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	97.33
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	97.33
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	97.33
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	97.33
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	97.33
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	97.33
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	97.32
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	97.32
2ghi_A	260	Transport protein; multidrug resistance protein, M	97.31
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	97.31
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	97.3
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	97.3
3end_A	307	Light-independent protochlorophyllide reductase ir	97.29
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	97.29
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	97.29
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	97.29
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	97.28
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	97.28
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	97.28
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	97.26
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	97.26
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	97.26
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	97.25
2chg_A	226	Replication factor C small subunit; DNA-binding pr	97.25
4a74_A	231	DNA repair and recombination protein RADA; hydrola	97.25
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	97.25
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	97.24
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	97.24
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	97.23
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	97.23
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	97.23
3co5_A	143	Putative two-component system transcriptional RES	97.22
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	97.22
1via_A	175	Shikimate kinase; structural genomics, transferase	97.22
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	97.22
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	97.2
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	97.2
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	97.19
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	97.19
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	97.19
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	97.19
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	97.17
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	97.17
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	97.17
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	97.16
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	97.16
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	97.15
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	97.15
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	97.15
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	97.15
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	97.14
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	97.14
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	97.14
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	97.14
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	97.14
3uc9_A	233	Increased recombination centers protein 6; rossman	97.14
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	97.13
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	97.13
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	97.12
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	97.12
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	97.12
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	97.11
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	97.11
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	97.11
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	97.1
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	97.1
2vli_A	183	Antibiotic resistance protein; transferase, tunica	97.1
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	97.09
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	97.09
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	97.09
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	97.09
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	97.09
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	97.09
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	97.08
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	97.08
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	97.07
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	97.05
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	97.05
2ewv_A	372	Twitching motility protein PILT; pilus retraction	97.05
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	97.04
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	97.03
1p9r_A	418	General secretion pathway protein E; bacterial typ	97.02
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	97.01
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	97.0
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	97.0
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	97.0
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	96.99
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	96.99
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	96.99
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	96.99
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	96.98
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	96.96
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	96.96
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	96.96
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	96.95
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	96.95
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	96.95
3kta_A	182	Chromosome segregation protein SMC; structural mai	96.94
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	96.94
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	96.93
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	96.93
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	96.93
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	96.92
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	96.92
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	96.88
2og2_A	359	Putative signal recognition particle receptor; nuc	96.88
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	96.86
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	96.86
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	96.85
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	96.84
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	96.84
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	96.83
3bos_A	242	Putative DNA replication factor; P-loop containing	96.82
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	96.82
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	96.81
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	96.8
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	96.8
2cvh_A	220	DNA repair and recombination protein RADB; filamen	96.78
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	96.77
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	96.77
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	96.77
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	96.76
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	96.75
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	96.75
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	96.74
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	96.73
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	96.72
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	96.68
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	96.68
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	96.67
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	96.66
3k9g_A	267	PF-32 protein; ssgcid, SBRI, decode biostructures,	96.66
4ido_A	457	Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE	96.66
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	96.61
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	96.61
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	96.6
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	96.59
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	96.58
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	96.58
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	96.58
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	96.57
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	96.57
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	96.57
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	96.55
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	96.55
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	96.54
1tue_A	212	Replication protein E1; helicase, replication, E1E	96.54
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	96.52
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	96.52
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	96.51
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	96.5
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	96.5
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	96.5
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	96.47
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	96.47
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	96.45
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	96.4
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	96.38
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	96.38
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	96.37
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	96.37
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	96.35
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	96.35
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	96.34
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	96.34
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	96.34
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	96.33
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	96.33
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	96.33
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	96.32
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	96.32
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	96.31
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	96.29
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	96.26
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	96.26
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	96.25
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	96.25
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	96.24
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	96.24
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	96.23
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	96.21
2qgz_A	308	Helicase loader, putative primosome component; str	96.19
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	96.19
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	96.16
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	96.15
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	96.14
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	96.13
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	96.12
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	96.12
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	96.11
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	96.11
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	96.09
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	96.07
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	96.06
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	96.06
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	96.06
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	96.06

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=100.00  E-value=4.6e-43  Score=241.81  Aligned_cols=168  Identities=43%  Similarity=0.724  Sum_probs=147.1

Q ss_pred             CCCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcE
Q 030364            6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAA   85 (178)
Q Consensus         6 ~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~   85 (178)
                      ++.+.+||+|+|.+|||||||+++|..+.+...+.||.+.++.......++..+.+.+|||+|++.|..+++.+++.+++
T Consensus         9 ~P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~   88 (216)
T 4dkx_A            9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAA   88 (216)
T ss_dssp             ----CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSE
T ss_pred             CCCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccE
Confidence            34568999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Q 030364           86 AVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFY  165 (178)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  165 (178)
                      +++|||++++++|+++..|+..+.....++.|++||+||+|+.+.+.+..+++..+++.++++|++|||++|.||+++|+
T Consensus        89 ~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAktg~nV~e~F~  168 (216)
T 4dkx_A           89 AVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFR  168 (216)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHH
T ss_pred             EEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEEEeCCCCcCHHHHHH
Confidence            99999999999999999999999888778999999999999999899999999999999999999999999999999999


Q ss_pred             HHHhhccc
Q 030364          166 EIGDCTEC  173 (178)
Q Consensus       166 ~l~~~i~~  173 (178)
                      .|++.+..
T Consensus       169 ~i~~~i~~  176 (216)
T 4dkx_A          169 RVAAALPG  176 (216)
T ss_dssp             HHHHHC--
T ss_pred             HHHHHHHh
Confidence            99998754

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=100.00  E-value=6.3e-38  Score=210.88  Aligned_cols=175  Identities=67%  Similarity=1.048  Sum_probs=154.1

Q ss_pred             CcccCCCCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhh
Q 030364            1 MARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYY   80 (178)
Q Consensus         1 m~~~~~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~   80 (178)
                      |.....+.+.+||+++|.+|+|||||++++.++.+...+.++.+.++....+.+++..+.+.+||+||++.+...+..++
T Consensus         3 m~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~   82 (181)
T 2efe_B            3 MAAAGNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYY   82 (181)
T ss_dssp             -------CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHH
T ss_pred             ccCCCCCccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHh
Confidence            44455667789999999999999999999999998887888888888888888898899999999999999999999999


Q ss_pred             cCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCH
Q 030364           81 RGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNV  160 (178)
Q Consensus        81 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  160 (178)
                      +.+|++++|||++++.+++.+..|+..+.....++.|+++|+||+|+.+.+.+..++...+++..+++++++||++|.|+
T Consensus        83 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi  162 (181)
T 2efe_B           83 RGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNV  162 (181)
T ss_dssp             TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSSSCTTH
T ss_pred             ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEECCCCCCH
Confidence            99999999999999999999999999998887779999999999999877778888889999999999999999999999


Q ss_pred             HHHHHHHHhhccccc
Q 030364          161 NELFYEIGDCTECFS  175 (178)
Q Consensus       161 ~~~~~~l~~~i~~~~  175 (178)
                      +++|++|.+.+....
T Consensus       163 ~~l~~~l~~~~~~~~  177 (181)
T 2efe_B          163 KEIFYEIARRLPRVQ  177 (181)
T ss_dssp             HHHHHHHHHTCC---
T ss_pred             HHHHHHHHHHHHhcC
Confidence            999999999887654

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=100.00  E-value=3.2e-37  Score=205.20  Aligned_cols=166  Identities=63%  Similarity=0.986  Sum_probs=153.0

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEE
Q 030364            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA   86 (178)
Q Consensus         7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~   86 (178)
                      +.+.+||+++|.+|+|||||+++|.++.+...+.++.+.+........++..+.+.+||+||++.+...+..+++.+|++
T Consensus         3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~   82 (170)
T 1r2q_A            3 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAA   82 (170)
T ss_dssp             EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEE
Confidence            34689999999999999999999999998887888888888888888898899999999999999999999999999999


Q ss_pred             EEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Q 030364           87 VVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYE  166 (178)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  166 (178)
                      ++|||++++++++.+..|+..+.....++.|+++|+||+|+.+.+.+..++...+++..+++++++||++|.|++++|++
T Consensus        83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~  162 (170)
T 1r2q_A           83 IVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMA  162 (170)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999999988877788999999999999877777788888899999999999999999999999999


Q ss_pred             HHhhcc
Q 030364          167 IGDCTE  172 (178)
Q Consensus       167 l~~~i~  172 (178)
                      |.+.+.
T Consensus       163 i~~~~~  168 (170)
T 1r2q_A          163 IAKKLP  168 (170)
T ss_dssp             HHHTSC
T ss_pred             HHHHHh
Confidence            998775

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=100.00  E-value=3.1e-37  Score=209.48  Aligned_cols=169  Identities=40%  Similarity=0.734  Sum_probs=150.7

Q ss_pred             CCCCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCc
Q 030364            5 SNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAA   84 (178)
Q Consensus         5 ~~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d   84 (178)
                      ....+.+||+++|.+|+|||||+++|.++.+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|
T Consensus        16 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d   95 (191)
T 2a5j_A           16 PRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAA   95 (191)
T ss_dssp             CTTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCS
T ss_pred             cccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCC
Confidence            34456899999999999999999999999988777888888888888888998899999999999999999999999999


Q ss_pred             EEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Q 030364           85 AAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELF  164 (178)
Q Consensus        85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  164 (178)
                      ++++|||++++++++.+..|+..+......+.|+++|+||+|+.+.+.+..++...+++..+++++++||++|.|++++|
T Consensus        96 ~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  175 (191)
T 2a5j_A           96 GALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAF  175 (191)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence            99999999999999999999999988777789999999999998877888888899999999999999999999999999


Q ss_pred             HHHHhhccc
Q 030364          165 YEIGDCTEC  173 (178)
Q Consensus       165 ~~l~~~i~~  173 (178)
                      ++|.+.+.+
T Consensus       176 ~~l~~~i~~  184 (191)
T 2a5j_A          176 INTAKEIYR  184 (191)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999988754

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=100.00  E-value=4.4e-37  Score=209.26  Aligned_cols=168  Identities=41%  Similarity=0.683  Sum_probs=156.9

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEE
Q 030364            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA   86 (178)
Q Consensus         7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~   86 (178)
                      .+..+||+++|.+|+|||||+++|.++.+...+.++.+.+.....+..++..+.+.+||+||++.+...+..+++.+|++
T Consensus        13 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~   92 (196)
T 3tkl_A           13 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI   92 (196)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEE
T ss_pred             cccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEE
Confidence            35679999999999999999999999999888889999899888999999999999999999999999999999999999


Q ss_pred             EEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Q 030364           87 VVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYE  166 (178)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  166 (178)
                      ++|||++++.+++.+..|+..+......+.|+++|+||+|+...+.+...+...++..++++++++||++|.|++++|++
T Consensus        93 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~  172 (196)
T 3tkl_A           93 IVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMT  172 (196)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999999998887788999999999999888888888899999999999999999999999999999


Q ss_pred             HHhhcccc
Q 030364          167 IGDCTECF  174 (178)
Q Consensus       167 l~~~i~~~  174 (178)
                      |.+.+.+.
T Consensus       173 l~~~i~~~  180 (196)
T 3tkl_A          173 MAAEIKKR  180 (196)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99988654

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=2.3e-37  Score=211.75  Aligned_cols=168  Identities=39%  Similarity=0.688  Sum_probs=154.3

Q ss_pred             CCCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcE
Q 030364            6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAA   85 (178)
Q Consensus         6 ~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~   85 (178)
                      +.++.+||+++|.+|+|||||+++|.++.+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus        22 ~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~  101 (201)
T 2ew1_A           22 DYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANA  101 (201)
T ss_dssp             CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSE
T ss_pred             ccccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCE
Confidence            34567999999999999999999999999888888888888888888899989999999999999999999999999999


Q ss_pred             EEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Q 030364           86 AVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFY  165 (178)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  165 (178)
                      +++|||++++++++.+..|+..+......+.|+++|+||+|+.+.+.+..++...+++..+++++++||++|.|++++|+
T Consensus       102 ~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~  181 (201)
T 2ew1_A          102 LILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFL  181 (201)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            99999999999999999999999887667899999999999987778888888889998999999999999999999999


Q ss_pred             HHHhhccc
Q 030364          166 EIGDCTEC  173 (178)
Q Consensus       166 ~l~~~i~~  173 (178)
                      +|.+.+..
T Consensus       182 ~l~~~i~~  189 (201)
T 2ew1_A          182 DLACRLIS  189 (201)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99987754

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=100.00  E-value=1e-36  Score=202.87  Aligned_cols=165  Identities=45%  Similarity=0.753  Sum_probs=153.7

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEE
Q 030364            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (178)
Q Consensus         8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i   87 (178)
                      .+.+||+++|.+|+|||||++++.++.+...+.++.+.+........++..+.+.+||+||.+.+...+..+++.+|+++
T Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i   83 (170)
T 1z0j_A            4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI   83 (170)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEE
Confidence            46799999999999999999999999988888889888888888888998999999999999999999999999999999


Q ss_pred             EEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Q 030364           88 VVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI  167 (178)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  167 (178)
                      +|||++++.+++.+..|+..+.....+..|+++|+||+|+.+.+++..++...+++..+++++++||++|.|++++|++|
T Consensus        84 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i  163 (170)
T 1z0j_A           84 IVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEI  163 (170)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHH
Confidence            99999999999999999999988877899999999999998877888888899999999999999999999999999999


Q ss_pred             Hhhcc
Q 030364          168 GDCTE  172 (178)
Q Consensus       168 ~~~i~  172 (178)
                      .+.+.
T Consensus       164 ~~~i~  168 (170)
T 1z0j_A          164 SRRIP  168 (170)
T ss_dssp             HHHCC
T ss_pred             HHHHh
Confidence            98875

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=100.00  E-value=5.9e-37  Score=205.62  Aligned_cols=167  Identities=41%  Similarity=0.717  Sum_probs=153.9

Q ss_pred             CCCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcE
Q 030364            6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAA   85 (178)
Q Consensus         6 ~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~   85 (178)
                      ..++.+||+++|.+|+|||||+++|.++.+...+.++.+.+.....+..++..+.+.+||+||++.+...+..+++.+|+
T Consensus        11 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   90 (179)
T 1z0f_A           11 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAG   90 (179)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSE
T ss_pred             ccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCE
Confidence            34568999999999999999999999999888788888888888888889989999999999999999999999999999


Q ss_pred             EEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Q 030364           86 AVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFY  165 (178)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  165 (178)
                      +++|+|++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++...+++.++++++++||++|.|++++|+
T Consensus        91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  170 (179)
T 1z0f_A           91 ALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFL  170 (179)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred             EEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            99999999999999999999999887777899999999999988777888888999999999999999999999999999


Q ss_pred             HHHhhcc
Q 030364          166 EIGDCTE  172 (178)
Q Consensus       166 ~l~~~i~  172 (178)
                      +|.+.+.
T Consensus       171 ~l~~~i~  177 (179)
T 1z0f_A          171 EAAKKIY  177 (179)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHHh
Confidence            9998775

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=100.00  E-value=2.5e-37  Score=211.62  Aligned_cols=168  Identities=38%  Similarity=0.623  Sum_probs=145.6

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEE
Q 030364            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA   86 (178)
Q Consensus         7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~   86 (178)
                      .+..+||+++|.+|+|||||+++|.++.+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus        26 ~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i  105 (201)
T 2hup_A           26 YDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGA  105 (201)
T ss_dssp             CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEE
T ss_pred             cccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEE
Confidence            35579999999999999999999999998877888888888788888888889999999999999999999999999999


Q ss_pred             EEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCC-eEEEEeCCCCCCHHHHHH
Q 030364           87 VVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGL-SFLETSAKSAHNVNELFY  165 (178)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~  165 (178)
                      |+|||++++++++.+..|+..+......+.|+++|+||+|+.+.+.+..++...+++..++ +++++||++|.|++++|+
T Consensus       106 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~  185 (201)
T 2hup_A          106 ILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFL  185 (201)
T ss_dssp             EEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCCCCCHHHHHH
Confidence            9999999999999999999999887667899999999999988777888889999999999 999999999999999999


Q ss_pred             HHHhhcccc
Q 030364          166 EIGDCTECF  174 (178)
Q Consensus       166 ~l~~~i~~~  174 (178)
                      +|.+.+.+.
T Consensus       186 ~l~~~i~~~  194 (201)
T 2hup_A          186 RVATELIMR  194 (201)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999987643

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=100.00  E-value=7.4e-37  Score=203.47  Aligned_cols=165  Identities=55%  Similarity=0.876  Sum_probs=151.4

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEE
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVV   88 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~   88 (178)
                      +.+||+++|++|+|||||++++.++.+...+.++.+.+.......+++..+.+.+||+||++.+...+..+++.+|++++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~   81 (170)
T 1ek0_A            2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV   81 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence            46899999999999999999999999888888888888888888889989999999999999999999999999999999


Q ss_pred             EEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccc---cccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Q 030364           89 VYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEK---RKVKNEEGELYAQENGLSFLETSAKSAHNVNELFY  165 (178)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  165 (178)
                      |+|++++.+++.+..|+..+.....++.|+++|+||+|+...   +++..++...+++..+++++++||++|.|++++|+
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  161 (170)
T 1ek0_A           82 VYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFL  161 (170)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHH
T ss_pred             EEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            999999999999999999988876778999999999999765   66777888889988999999999999999999999


Q ss_pred             HHHhhccc
Q 030364          166 EIGDCTEC  173 (178)
Q Consensus       166 ~l~~~i~~  173 (178)
                      +|.+.+.+
T Consensus       162 ~l~~~i~~  169 (170)
T 1ek0_A          162 GIGEKIPL  169 (170)
T ss_dssp             HHHTTSCC
T ss_pred             HHHHHHhh
Confidence            99988753

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=100.00  E-value=2.5e-37  Score=205.96  Aligned_cols=167  Identities=42%  Similarity=0.726  Sum_probs=145.8

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEE
Q 030364            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA   86 (178)
Q Consensus         7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~   86 (178)
                      .++.+||+++|.+|+|||||++++.++.+...+.++.+.+.....+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus         3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~   82 (170)
T 1z08_A            3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGA   82 (170)
T ss_dssp             -CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEE
T ss_pred             CCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEE
Confidence            45689999999999999999999999998887888888888888888888899999999999999999999999999999


Q ss_pred             EEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Q 030364           87 VVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYE  166 (178)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  166 (178)
                      ++|+|++++++++.+..|+..+......+.|+++|+||+|+.+.+.+..++...+++..+++++++||++|.|++++|++
T Consensus        83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  162 (170)
T 1z08_A           83 ILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLD  162 (170)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Confidence            99999999999999999998887765568999999999999887788888889999999999999999999999999999


Q ss_pred             HHhhccc
Q 030364          167 IGDCTEC  173 (178)
Q Consensus       167 l~~~i~~  173 (178)
                      |.+.+.+
T Consensus       163 l~~~~~~  169 (170)
T 1z08_A          163 LCKRMIE  169 (170)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHhh
Confidence            9988754

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=100.00  E-value=1.2e-37  Score=209.95  Aligned_cols=167  Identities=37%  Similarity=0.694  Sum_probs=124.6

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEE
Q 030364            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA   86 (178)
Q Consensus         7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~   86 (178)
                      .++.+||+++|.+|+|||||+++|.++.+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus         5 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   84 (183)
T 2fu5_C            5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI   84 (183)
T ss_dssp             CSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEE
T ss_pred             cCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEE
Confidence            45689999999999999999999999888777888888888888888899889999999999999999999999999999


Q ss_pred             EEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Q 030364           87 VVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYE  166 (178)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  166 (178)
                      ++|||++++++++.+..|+..+.....++.|+++|+||+|+.+.+.+..++...+++.++++++++||++|.|++++|++
T Consensus        85 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~  164 (183)
T 2fu5_C           85 MLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFT  164 (183)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999999998876678999999999999877778888889999999999999999999999999999


Q ss_pred             HHhhccc
Q 030364          167 IGDCTEC  173 (178)
Q Consensus       167 l~~~i~~  173 (178)
                      |.+.+..
T Consensus       165 l~~~i~~  171 (183)
T 2fu5_C          165 LARDIKA  171 (183)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9987754

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=8.7e-37  Score=205.13  Aligned_cols=171  Identities=40%  Similarity=0.676  Sum_probs=146.1

Q ss_pred             CCCCceeEEEEEcCCCCCHHHHHHHHHhCcCC-CCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCC
Q 030364            5 SNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFF-DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGA   83 (178)
Q Consensus         5 ~~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~   83 (178)
                      ...++.+||+++|.+|+|||||+++|.++.+. ..+.++.+.++.......++..+.+.+||+||++.+...+..+++.+
T Consensus         5 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~   84 (180)
T 2g6b_A            5 DFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDA   84 (180)
T ss_dssp             CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGC
T ss_pred             ccCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCC
Confidence            44567899999999999999999999998875 45678888888777778899899999999999999999999999999


Q ss_pred             cEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHH
Q 030364           84 AAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNEL  163 (178)
Q Consensus        84 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~  163 (178)
                      |++++|+|++++.+++.+..|+..+......+.|+++|+||+|+...+.+..++...+++.++++++++||++|.|++++
T Consensus        85 d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  164 (180)
T 2g6b_A           85 HALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLA  164 (180)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHH
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHH
Confidence            99999999999999999999999988876678999999999999887778888888899989999999999999999999


Q ss_pred             HHHHHhhccccc
Q 030364          164 FYEIGDCTECFS  175 (178)
Q Consensus       164 ~~~l~~~i~~~~  175 (178)
                      |++|.+.+.+.+
T Consensus       165 ~~~l~~~~~~~~  176 (180)
T 2g6b_A          165 FTAIAKELKRRS  176 (180)
T ss_dssp             HHHHHHHHHC--
T ss_pred             HHHHHHHHHHHh
Confidence            999999887654

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=100.00  E-value=7.7e-37  Score=205.04  Aligned_cols=168  Identities=42%  Similarity=0.719  Sum_probs=152.8

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEE
Q 030364            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA   86 (178)
Q Consensus         7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~   86 (178)
                      +.+.+||+++|.+|+|||||++++.++.+...+.++.+.+.....+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus        11 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~   90 (179)
T 2y8e_A           11 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVA   90 (179)
T ss_dssp             -CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEE
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEE
Confidence            34679999999999999999999999998888888888888888888999889999999999999999999999999999


Q ss_pred             EEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Q 030364           87 VVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYE  166 (178)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  166 (178)
                      ++|+|++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++...+++..+++++++||++|.|++++|++
T Consensus        91 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~  170 (179)
T 2y8e_A           91 VVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRR  170 (179)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999999888776678999999999999887788888888899999999999999999999999999


Q ss_pred             HHhhcccc
Q 030364          167 IGDCTECF  174 (178)
Q Consensus       167 l~~~i~~~  174 (178)
                      |.+.+...
T Consensus       171 l~~~~~~~  178 (179)
T 2y8e_A          171 VAAALPGM  178 (179)
T ss_dssp             HHHTCC--
T ss_pred             HHHHHhhc
Confidence            99987643

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=7.2e-37  Score=207.86  Aligned_cols=168  Identities=49%  Similarity=0.745  Sum_probs=153.6

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEE
Q 030364            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA   86 (178)
Q Consensus         7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~   86 (178)
                      .++.+||+++|.+|+|||||+++|.++.+...+.++.+.++......+++..+.+.+||+||++.+...+..+++.+|++
T Consensus        20 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i   99 (192)
T 2fg5_A           20 AIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAA   99 (192)
T ss_dssp             -CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred             cCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEE
Confidence            45689999999999999999999999998877889999888888888888889999999999999999999999999999


Q ss_pred             EEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Q 030364           87 VVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYE  166 (178)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  166 (178)
                      ++|||++++++++.+..|+..+.....++.|+++|+||+|+.+.+.+..++...+++..+++++++||++|.|++++|++
T Consensus       100 ilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  179 (192)
T 2fg5_A          100 VIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQG  179 (192)
T ss_dssp             EEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTTTTBSHHHHHHH
T ss_pred             EEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHH
Confidence            99999999999999999999998877678999999999999877778888899999999999999999999999999999


Q ss_pred             HHhhcccc
Q 030364          167 IGDCTECF  174 (178)
Q Consensus       167 l~~~i~~~  174 (178)
                      |.+.+...
T Consensus       180 l~~~i~~~  187 (192)
T 2fg5_A          180 ISRQIPPL  187 (192)
T ss_dssp             HHHTCC--
T ss_pred             HHHHHHhh
Confidence            99988654

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=100.00  E-value=1.4e-36  Score=205.84  Aligned_cols=167  Identities=36%  Similarity=0.622  Sum_probs=153.0

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEE
Q 030364            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA   86 (178)
Q Consensus         7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~   86 (178)
                      .+..+||+++|.+|+|||||+++|.++.+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++.+|++
T Consensus        19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   98 (189)
T 2gf9_A           19 SDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGF   98 (189)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEE
T ss_pred             cCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEE
Confidence            34579999999999999999999999998877888888888888888888899999999999999999999999999999


Q ss_pred             EEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Q 030364           87 VVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYE  166 (178)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  166 (178)
                      ++|||++++++++.+..|+..+......+.|+++|+||+|+...+.+..++...+++..+++++++||++|.|++++|++
T Consensus        99 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~  178 (189)
T 2gf9_A           99 LLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFER  178 (189)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHH
Confidence            99999999999999999999998876678999999999999887778888889999999999999999999999999999


Q ss_pred             HHhhccc
Q 030364          167 IGDCTEC  173 (178)
Q Consensus       167 l~~~i~~  173 (178)
                      |.+.+..
T Consensus       179 l~~~i~~  185 (189)
T 2gf9_A          179 LVDVICE  185 (189)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9987743

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=100.00  E-value=1.6e-36  Score=208.18  Aligned_cols=168  Identities=38%  Similarity=0.674  Sum_probs=154.8

Q ss_pred             CCCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcE
Q 030364            6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAA   85 (178)
Q Consensus         6 ~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~   85 (178)
                      ..+..+||+|+|.+|+|||||+++|.++.+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus         4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   83 (206)
T 2bcg_Y            4 EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHG   83 (206)
T ss_dssp             CCSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSE
T ss_pred             ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCE
Confidence            34668999999999999999999999999888888888888888888889989999999999999999999999999999


Q ss_pred             EEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Q 030364           86 AVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFY  165 (178)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  165 (178)
                      +++|||++++.+++.+..|+..+.....++.|+++|+||+|+.+.+.+..++...+++..+++++++||++|.|++++|+
T Consensus        84 vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~  163 (206)
T 2bcg_Y           84 IIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFL  163 (206)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence            99999999999999999999999887777899999999999988777888888889999999999999999999999999


Q ss_pred             HHHhhccc
Q 030364          166 EIGDCTEC  173 (178)
Q Consensus       166 ~l~~~i~~  173 (178)
                      +|.+.+..
T Consensus       164 ~l~~~i~~  171 (206)
T 2bcg_Y          164 TMARQIKE  171 (206)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99987753

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=100.00  E-value=1.2e-36  Score=205.59  Aligned_cols=167  Identities=38%  Similarity=0.650  Sum_probs=153.6

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEE
Q 030364            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA   86 (178)
Q Consensus         7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~   86 (178)
                      .++.+||+++|.+|+|||||+++|.++.+...+.++.+.+.....+..++..+.+.+||+||++.+...+..+++.+|++
T Consensus         7 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   86 (186)
T 2bme_A            7 YDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGA   86 (186)
T ss_dssp             CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEE
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEE
Confidence            35689999999999999999999999998888888888888888888899889999999999999999999999999999


Q ss_pred             EEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Q 030364           87 VVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYE  166 (178)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  166 (178)
                      ++|||++++++++.+..|+..+......+.|+++|+||+|+...+.+...+...+++..+++++++||++|.|++++|++
T Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  166 (186)
T 2bme_A           87 LLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQ  166 (186)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHH
Confidence            99999999999999999999888876678999999999999877778888889999999999999999999999999999


Q ss_pred             HHhhccc
Q 030364          167 IGDCTEC  173 (178)
Q Consensus       167 l~~~i~~  173 (178)
                      |.+.+.+
T Consensus       167 l~~~~~~  173 (186)
T 2bme_A          167 CARKILN  173 (186)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9987753

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=100.00  E-value=9.6e-37  Score=204.92  Aligned_cols=168  Identities=38%  Similarity=0.645  Sum_probs=151.9

Q ss_pred             CCCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcE
Q 030364            6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAA   85 (178)
Q Consensus         6 ~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~   85 (178)
                      ..++.+||+++|.+|+|||||+++|.++.+...+.++.+.+.....+..++..+.+.+||+||++.+...+..+++.+|+
T Consensus         5 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   84 (181)
T 3tw8_B            5 DYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHG   84 (181)
T ss_dssp             -CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSE
T ss_pred             ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCE
Confidence            45678999999999999999999999998888888899888888888999989999999999999999999999999999


Q ss_pred             EEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Q 030364           86 AVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFY  165 (178)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  165 (178)
                      +++|||++++++++.+..|+..+... .++.|+++|+||+|+.+...+..++...++...+++++++||++|.|++++|+
T Consensus        85 ~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  163 (181)
T 3tw8_B           85 VIVVYDVTSAESFVNVKRWLHEINQN-CDDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFN  163 (181)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHH-CTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHh-CCCCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence            99999999999999999999988776 46899999999999988888888889999999999999999999999999999


Q ss_pred             HHHhhcccc
Q 030364          166 EIGDCTECF  174 (178)
Q Consensus       166 ~l~~~i~~~  174 (178)
                      +|.+.+...
T Consensus       164 ~l~~~~~~~  172 (181)
T 3tw8_B          164 CITELVLRA  172 (181)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999987654

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.4e-36  Score=206.51  Aligned_cols=169  Identities=38%  Similarity=0.672  Sum_probs=153.7

Q ss_pred             CCCCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCc
Q 030364            5 SNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAA   84 (178)
Q Consensus         5 ~~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d   84 (178)
                      .+.++.+||+|+|.+|+|||||+++|.++.+...+.++.+.+........++..+.+.+||+||.+.+...+..+++.+|
T Consensus        20 ~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d   99 (193)
T 2oil_A           20 EDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAV   99 (193)
T ss_dssp             CCCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCC
T ss_pred             cccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCC
Confidence            33456899999999999999999999999988778888888888888888888999999999999999999999999999


Q ss_pred             EEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Q 030364           85 AAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELF  164 (178)
Q Consensus        85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  164 (178)
                      ++|+|||++++.+++.+..|+..+......+.|+++|+||+|+...+.+..++...+++..+++++++||++|.|++++|
T Consensus       100 ~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  179 (193)
T 2oil_A          100 GALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAF  179 (193)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence            99999999999999999999999887766789999999999998877778888899999999999999999999999999


Q ss_pred             HHHHhhccc
Q 030364          165 YEIGDCTEC  173 (178)
Q Consensus       165 ~~l~~~i~~  173 (178)
                      ++|.+.+.+
T Consensus       180 ~~l~~~i~~  188 (193)
T 2oil_A          180 ETVLKEIFA  188 (193)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999987754

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=100.00  E-value=9.8e-37  Score=205.18  Aligned_cols=168  Identities=32%  Similarity=0.465  Sum_probs=151.1

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEE
Q 030364            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA   86 (178)
Q Consensus         7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~   86 (178)
                      ..+.+||+++|.+|+|||||+++|.++.+...+.++.+.++ ......++..+.+.+||+||++.+...+..+++.+|++
T Consensus         3 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~   81 (181)
T 3t5g_A            3 QSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGY   81 (181)
T ss_dssp             CEEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEE
T ss_pred             CCceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEE
Confidence            34689999999999999999999999998888888888777 67778899899999999999999999999999999999


Q ss_pred             EEEEECCCHhHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Q 030364           87 VVVYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFY  165 (178)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  165 (178)
                      ++|||++++++++.+..|+..+.... ..+.|+++|+||+|+.+.+.+..++...+++.++++++++||++|.|++++|+
T Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~  161 (181)
T 3t5g_A           82 ILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFR  161 (181)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHHH
Confidence            99999999999999999998886654 46899999999999988888889999999999999999999999999999999


Q ss_pred             HHHhhccccc
Q 030364          166 EIGDCTECFS  175 (178)
Q Consensus       166 ~l~~~i~~~~  175 (178)
                      +|.+.+...+
T Consensus       162 ~l~~~~~~~~  171 (181)
T 3t5g_A          162 RIILEAEKMD  171 (181)
T ss_dssp             HHHHHHHTC-
T ss_pred             HHHHHHHHhc
Confidence            9999887654

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=100.00  E-value=1.3e-36  Score=207.84  Aligned_cols=167  Identities=39%  Similarity=0.674  Sum_probs=143.1

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEE
Q 030364            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA   86 (178)
Q Consensus         7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~   86 (178)
                      .++.+||+|+|.+|+|||||+++|.++.+...+.++.+.+.....+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus        22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~  101 (200)
T 2o52_A           22 SDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGA  101 (200)
T ss_dssp             CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEE
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEE
Confidence            35689999999999999999999999988877888888888888888899889999999999999999999999999999


Q ss_pred             EEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Q 030364           87 VVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYE  166 (178)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  166 (178)
                      |+|||++++.+++.+..|+..+.....++.|+++|+||+|+...+.+...+...+++..+++++++||++|.|++++|++
T Consensus       102 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~  181 (200)
T 2o52_A          102 LLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLK  181 (200)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999999988876678999999999999877778888888999999999999999999999999999


Q ss_pred             HHhhccc
Q 030364          167 IGDCTEC  173 (178)
Q Consensus       167 l~~~i~~  173 (178)
                      |.+.+..
T Consensus       182 l~~~i~~  188 (200)
T 2o52_A          182 CARTILN  188 (200)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9987653

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=6.9e-38  Score=212.70  Aligned_cols=168  Identities=36%  Similarity=0.609  Sum_probs=155.2

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEE
Q 030364            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA   86 (178)
Q Consensus         7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~   86 (178)
                      .++.+||+|+|.+|+|||||+++|.++.+...+.++.+.+........++..+.+.+||+||++.+...+..+++.+|++
T Consensus        20 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~   99 (191)
T 3dz8_A           20 FDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGF   99 (191)
T ss_dssp             EEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEE
T ss_pred             cCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEE
Confidence            35689999999999999999999999998887888888888888888888889999999999999999999999999999


Q ss_pred             EEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Q 030364           87 VVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYE  166 (178)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  166 (178)
                      ++|||++++++++.+..|+..+......+.|+++|+||+|+.+.+.+..++...+++..+++++++||++|.|++++|++
T Consensus       100 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  179 (191)
T 3dz8_A          100 ILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFER  179 (191)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHH
Confidence            99999999999999999999998877789999999999999888888888999999999999999999999999999999


Q ss_pred             HHhhcccc
Q 030364          167 IGDCTECF  174 (178)
Q Consensus       167 l~~~i~~~  174 (178)
                      |.+.+...
T Consensus       180 l~~~i~~~  187 (191)
T 3dz8_A          180 LVDAICDK  187 (191)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99987654

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=100.00  E-value=2.6e-36  Score=206.66  Aligned_cols=166  Identities=35%  Similarity=0.612  Sum_probs=152.7

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEE
Q 030364            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA   86 (178)
Q Consensus         7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~   86 (178)
                      .+..+||+|+|.+|+|||||+++|.++.+...+.++.+.++....+..++..+.+.+||+||.+.+...+..+++.+|++
T Consensus         5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   84 (203)
T 1zbd_A            5 FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGF   84 (203)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEE
T ss_pred             cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEE
Confidence            45689999999999999999999999998877888888888888888888899999999999999999999999999999


Q ss_pred             EEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Q 030364           87 VVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYE  166 (178)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  166 (178)
                      |+|||++++++++.+..|+..+......+.|+++|+||+|+.+.+.+..++...+++.++++++++||++|.|++++|++
T Consensus        85 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  164 (203)
T 1zbd_A           85 ILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFER  164 (203)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHH
Confidence            99999999999999999999998876678999999999999887778888889999999999999999999999999999


Q ss_pred             HHhhcc
Q 030364          167 IGDCTE  172 (178)
Q Consensus       167 l~~~i~  172 (178)
                      |.+.+.
T Consensus       165 l~~~i~  170 (203)
T 1zbd_A          165 LVDVIC  170 (203)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998764

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=100.00  E-value=2.4e-36  Score=203.57  Aligned_cols=167  Identities=32%  Similarity=0.497  Sum_probs=151.4

Q ss_pred             CCCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcE
Q 030364            6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAA   85 (178)
Q Consensus         6 ~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~   85 (178)
                      ...+.+||+++|.+|+|||||+++|.++.+...+.++.+..+ ......++..+.+.+||+||++.+...+..+++.+|+
T Consensus        14 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~   92 (183)
T 3kkq_A           14 ENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDG   92 (183)
T ss_dssp             CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSE
T ss_pred             cCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCE
Confidence            345689999999999999999999999988888888887776 6777888989999999999999999999999999999


Q ss_pred             EEEEEECCCHhHHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCC-CCCCHHHH
Q 030364           86 AVVVYDITSMDSFERAKKWVQELQRQ-GNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAK-SAHNVNEL  163 (178)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~-~~~~i~~~  163 (178)
                      +++|||++++++++.+..|+..+... ...+.|+++|+||+|+.+.+.+..++...+++.++++++++||+ +|.|++++
T Consensus        93 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v~~l  172 (183)
T 3kkq_A           93 FLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKT  172 (183)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEeccCCCCCCHHHH
Confidence            99999999999999999999888663 35789999999999998888888899999999999999999999 99999999


Q ss_pred             HHHHHhhccc
Q 030364          164 FYEIGDCTEC  173 (178)
Q Consensus       164 ~~~l~~~i~~  173 (178)
                      |++|.+.+.+
T Consensus       173 ~~~l~~~i~~  182 (183)
T 3kkq_A          173 FHDLVRVIRQ  182 (183)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhh
Confidence            9999987753

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=100.00  E-value=2.3e-36  Score=203.10  Aligned_cols=169  Identities=28%  Similarity=0.496  Sum_probs=150.8

Q ss_pred             CCCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcE
Q 030364            6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAA   85 (178)
Q Consensus         6 ~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~   85 (178)
                      .+.+.++|+++|.+|+|||||+++|.++.+...+.++.+..+. .....++..+.+.+||+||++.+...+..+++.+|+
T Consensus         5 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~   83 (181)
T 2fn4_A            5 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHG   83 (181)
T ss_dssp             CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSE
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCE
Confidence            3456899999999999999999999999888878888877665 667788888999999999999999999999999999


Q ss_pred             EEEEEECCCHhHHHHHHHHHHHHHH-hCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Q 030364           86 AVVVYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELF  164 (178)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~-~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  164 (178)
                      +++|||++++++++.+..|+..+.. ....+.|+++|+||+|+.+.+.+..++...++...+++++++||++|.|++++|
T Consensus        84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~  163 (181)
T 2fn4_A           84 FLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAF  163 (181)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHH
T ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHH
Confidence            9999999999999999999988744 445689999999999998877888888899999999999999999999999999


Q ss_pred             HHHHhhccccc
Q 030364          165 YEIGDCTECFS  175 (178)
Q Consensus       165 ~~l~~~i~~~~  175 (178)
                      ++|.+.+...+
T Consensus       164 ~~l~~~~~~~~  174 (181)
T 2fn4_A          164 EQLVRAVRKYQ  174 (181)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHhh
Confidence            99999886543

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=100.00  E-value=6.7e-37  Score=208.02  Aligned_cols=168  Identities=36%  Similarity=0.681  Sum_probs=145.3

Q ss_pred             CCCCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCc
Q 030364            5 SNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAA   84 (178)
Q Consensus         5 ~~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d   84 (178)
                      ...+..+||+++|.+|+|||||+++|.++.+...+.++.+.+.....+.+++..+.+.+||+||++.+...+..+++.+|
T Consensus        21 ~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d  100 (192)
T 2il1_A           21 RPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAK  100 (192)
T ss_dssp             -CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCS
T ss_pred             cccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCC
Confidence            34456899999999999999999999998887778888888888888888998899999999999999999999999999


Q ss_pred             EEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHc-CCeEEEEeCCCCCCHHHH
Q 030364           85 AAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQEN-GLSFLETSAKSAHNVNEL  163 (178)
Q Consensus        85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~  163 (178)
                      ++++|||++++.+++.+..|+..+......+.|+++|+||+|+...+++..++...+++.. +++++++||++|.|++++
T Consensus       101 ~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l  180 (192)
T 2il1_A          101 GIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEI  180 (192)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTTBSHHHH
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCCCCCHHHH
Confidence            9999999999999999999998888876778999999999999887788888888888874 789999999999999999


Q ss_pred             HHHHHhhcc
Q 030364          164 FYEIGDCTE  172 (178)
Q Consensus       164 ~~~l~~~i~  172 (178)
                      |++|.+.+.
T Consensus       181 ~~~l~~~i~  189 (192)
T 2il1_A          181 FLKLVDDIL  189 (192)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998764

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=100.00  E-value=8.6e-37  Score=204.81  Aligned_cols=171  Identities=33%  Similarity=0.485  Sum_probs=149.8

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCC-eEEEEEEEeCCCchhhhccchhhhcCCcE
Q 030364            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNE-VTIKFDIWDTAGQERYHSLAPMYYRGAAA   85 (178)
Q Consensus         7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~d~~g~~~~~~~~~~~~~~~d~   85 (178)
                      ..+.+||+++|.+|+|||||+++|.++.+...+.++.+.+.....+.+++ ..+.+.+||+||++.+...+..+++.+|+
T Consensus         3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~   82 (178)
T 2hxs_A            3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG   82 (178)
T ss_dssp             CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred             CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence            45689999999999999999999999888776777877777777788876 67899999999999999999999999999


Q ss_pred             EEEEEECCCHhHHHHHHHHHHHHHHhCC--CCce-EEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHH
Q 030364           86 AVVVYDITSMDSFERAKKWVQELQRQGN--PNLI-MFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNE  162 (178)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~-~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  162 (178)
                      +++|||++++++++.+..|+..+.....  .+.| +++|+||+|+.+.+.+..++...+++..+++++++||++|.|+++
T Consensus        83 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  162 (178)
T 2hxs_A           83 VLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFL  162 (178)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEECTTTCTTHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHH
Confidence            9999999999999999999888876421  2444 789999999988777888888899999999999999999999999


Q ss_pred             HHHHHHhhccccccC
Q 030364          163 LFYEIGDCTECFSLQ  177 (178)
Q Consensus       163 ~~~~l~~~i~~~~~~  177 (178)
                      +|++|.+.+.+.+..
T Consensus       163 l~~~l~~~~~~~~~~  177 (178)
T 2hxs_A          163 CFQKVAAEILGIKLN  177 (178)
T ss_dssp             HHHHHHHHHTTCCCC
T ss_pred             HHHHHHHHHHhhhhc
Confidence            999999988776543

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=100.00  E-value=6.4e-37  Score=209.19  Aligned_cols=169  Identities=31%  Similarity=0.528  Sum_probs=139.0

Q ss_pred             CCCCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCc
Q 030364            5 SNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAA   84 (178)
Q Consensus         5 ~~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d   84 (178)
                      ...++.+||+++|.+|+|||||+++|.++.+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|
T Consensus        23 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d  102 (199)
T 2p5s_A           23 FSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKAD  102 (199)
T ss_dssp             -----CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCS
T ss_pred             cCcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCC
Confidence            44456899999999999999999999999988778888888888888888999999999999999999999999999999


Q ss_pred             EEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCc------cccccCHHHHHHHHHHcCCeEEEEeCCCCC
Q 030364           85 AAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLE------EKRKVKNEEGELYAQENGLSFLETSAKSAH  158 (178)
Q Consensus        85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  158 (178)
                      ++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.      ..+.+..++...+++..+++++++||++|.
T Consensus       103 ~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~  182 (199)
T 2p5s_A          103 GVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGS  182 (199)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTTCT
T ss_pred             EEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCCCCC
Confidence            99999999999999999999998887766789999999999986      345667778888999999999999999999


Q ss_pred             CHHHHHHHHHhhccc
Q 030364          159 NVNELFYEIGDCTEC  173 (178)
Q Consensus       159 ~i~~~~~~l~~~i~~  173 (178)
                      |++++|++|.+.+.+
T Consensus       183 gv~el~~~l~~~i~~  197 (199)
T 2p5s_A          183 NIVEAVLHLAREVKK  197 (199)
T ss_dssp             THHHHHHHHHHHHTC
T ss_pred             CHHHHHHHHHHHHHh
Confidence            999999999998754

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=100.00  E-value=2e-36  Score=201.14  Aligned_cols=164  Identities=34%  Similarity=0.594  Sum_probs=150.1

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEE
Q 030364            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (178)
Q Consensus         8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i   87 (178)
                      +..+||+++|++|+|||||+++|.++.+...+.++.+.+.....+..++..+.+.+||+||++.+...+..+++.+|+++
T Consensus         3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   82 (168)
T 1z2a_A            3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV   82 (168)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred             ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence            46899999999999999999999999888888888888888888888888899999999999999999999999999999


Q ss_pred             EEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Q 030364           88 VVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI  167 (178)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  167 (178)
                      +|+|++++++++.+..|+..+.... ++.|+++|+||+|+.+.+.+..++...+++..+++++++||++|.|+++++++|
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l  161 (168)
T 1z2a_A           83 LVFSTTDRESFEAISSWREKVVAEV-GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYL  161 (168)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHH-CSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Confidence            9999999999999999998887764 688999999999998877777888889999999999999999999999999999


Q ss_pred             Hhhcc
Q 030364          168 GDCTE  172 (178)
Q Consensus       168 ~~~i~  172 (178)
                      .+.+.
T Consensus       162 ~~~~~  166 (168)
T 1z2a_A          162 AEKHL  166 (168)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            98764

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=100.00  E-value=2e-36  Score=201.49  Aligned_cols=165  Identities=39%  Similarity=0.711  Sum_probs=144.0

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEE
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVV   88 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~   88 (178)
                      ..+||+++|++|+|||||++++.++.+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++.+|++++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   81 (170)
T 1g16_A            2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL   81 (170)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred             CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence            46899999999999999999999999887788888888888888888888999999999999999999999999999999


Q ss_pred             EEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Q 030364           89 VYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIG  168 (178)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  168 (178)
                      |+|++++.+++.+..|+..+.....++.|+++|+||+|+ ..+.+..++...+++..+++++++||++|.|++++|++|.
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~  160 (170)
T 1g16_A           82 VYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLA  160 (170)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTC-TTCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccC-CcCccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence            999999999999999999998877678999999999999 4455667788889998999999999999999999999999


Q ss_pred             hhcccc
Q 030364          169 DCTECF  174 (178)
Q Consensus       169 ~~i~~~  174 (178)
                      +.+.+.
T Consensus       161 ~~~~~~  166 (170)
T 1g16_A          161 KLIQEK  166 (170)
T ss_dssp             HHHHHT
T ss_pred             HHHHHH
Confidence            987643

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.3e-36  Score=209.09  Aligned_cols=167  Identities=43%  Similarity=0.681  Sum_probs=145.0

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEE
Q 030364            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA   86 (178)
Q Consensus         7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~   86 (178)
                      .+..+||+|+|.+|+|||||+++|.++.+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus        10 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~v   89 (223)
T 3cpj_B           10 YDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGA   89 (223)
T ss_dssp             CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEE
T ss_pred             CCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEE
Confidence            35679999999999999999999999998877888888888888888899889999999999999999999999999999


Q ss_pred             EEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Q 030364           87 VVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYE  166 (178)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  166 (178)
                      |+|||++++.+++.+..|+..+......+.|+++|+||+|+...+.+..++...+++..+++++++||++|.|++++|++
T Consensus        90 ilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  169 (223)
T 3cpj_B           90 LIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEE  169 (223)
T ss_dssp             EEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCCC-CCCHHHHHHH
T ss_pred             EEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999999998876678999999999999887778888888999999999999999999999999999


Q ss_pred             HHhhccc
Q 030364          167 IGDCTEC  173 (178)
Q Consensus       167 l~~~i~~  173 (178)
                      |.+.+.+
T Consensus       170 l~~~i~~  176 (223)
T 3cpj_B          170 LINTIYQ  176 (223)
T ss_dssp             HHHHHTT
T ss_pred             HHHHHHH
Confidence            9988764

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=100.00  E-value=1.2e-36  Score=207.34  Aligned_cols=170  Identities=25%  Similarity=0.273  Sum_probs=144.4

Q ss_pred             CCCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhc-cchhhhcCCc
Q 030364            6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHS-LAPMYYRGAA   84 (178)
Q Consensus         6 ~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~-~~~~~~~~~d   84 (178)
                      +....+||+++|.+|||||||+++|.+........++.+.+.....+.+++..+.+.+||++|++.+.. ++..+++.+|
T Consensus        19 ~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d   98 (195)
T 3cbq_A           19 QKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGD   98 (195)
T ss_dssp             ---CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCS
T ss_pred             CCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCC
Confidence            345689999999999999999999976544333445556666667778899999999999999987765 6778889999


Q ss_pred             EEEEEEECCCHhHHHHHHHHHHHHHHhCC-CCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHH
Q 030364           85 AAVVVYDITSMDSFERAKKWVQELQRQGN-PNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNEL  163 (178)
Q Consensus        85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~  163 (178)
                      ++++|||++++++++.+..|+..+..... .+.|+++|+||+|+...+.+..++...+++.++++++++||++|.|++++
T Consensus        99 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~l  178 (195)
T 3cbq_A           99 AFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTREL  178 (195)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCCCCCCHHHH
Confidence            99999999999999999999998877543 58999999999999877778888889999999999999999999999999


Q ss_pred             HHHHHhhccccc
Q 030364          164 FYEIGDCTECFS  175 (178)
Q Consensus       164 ~~~l~~~i~~~~  175 (178)
                      |++|++.+...+
T Consensus       179 f~~l~~~i~~~~  190 (195)
T 3cbq_A          179 FEGAVRQIRLRR  190 (195)
T ss_dssp             HHHHHHHHHTTC
T ss_pred             HHHHHHHHHHhc
Confidence            999999887654

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=100.00  E-value=4.7e-36  Score=203.28  Aligned_cols=165  Identities=35%  Similarity=0.619  Sum_probs=148.1

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhh-ccchhhhcCCcEE
Q 030364            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYH-SLAPMYYRGAAAA   86 (178)
Q Consensus         8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~-~~~~~~~~~~d~~   86 (178)
                      .+.+||+++|.+|+|||||+++|.++.+...+.++.+.++....+.+++..+.+.+||+||++.+. ..+..+++.+|++
T Consensus        18 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~i   97 (189)
T 1z06_A           18 SRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAV   97 (189)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCEE
Confidence            457999999999999999999999999888888888888888888889988999999999999998 8889999999999


Q ss_pred             EEEEECCCHhHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCC---CCHHH
Q 030364           87 VVVYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSA---HNVNE  162 (178)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~---~~i~~  162 (178)
                      ++|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+++..++...+++.++++++++||++|   .|+++
T Consensus        98 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~i~~  177 (189)
T 1z06_A           98 VFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEA  177 (189)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEeCCcCCcccCHHH
Confidence            99999999999999999999888765 568999999999999887788888899999999999999999999   99999


Q ss_pred             HHHHHHhhcc
Q 030364          163 LFYEIGDCTE  172 (178)
Q Consensus       163 ~~~~l~~~i~  172 (178)
                      +|++|.+.+.
T Consensus       178 l~~~l~~~i~  187 (189)
T 1z06_A          178 IFMTLAHKLK  187 (189)
T ss_dssp             HHHHHC----
T ss_pred             HHHHHHHHHh
Confidence            9999988764

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=100.00  E-value=3e-36  Score=200.58  Aligned_cols=165  Identities=25%  Similarity=0.278  Sum_probs=134.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhc-cchhhhcCCcEEEE
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHS-LAPMYYRGAAAAVV   88 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~-~~~~~~~~~d~~i~   88 (178)
                      .+||+++|.+|+|||||+++|.+........++.+.+.....+.+++..+.+.+||+||++.+.. .+..+++.+|++++
T Consensus         2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~   81 (169)
T 3q85_A            2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI   81 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence            57999999999999999999998777666666667777778888899999999999999988876 77778899999999


Q ss_pred             EEECCCHhHHHHHHHHHHHHHHhCC-CCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Q 030364           89 VYDITSMDSFERAKKWVQELQRQGN-PNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI  167 (178)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  167 (178)
                      |||++++++++.+..|+..+..... .+.|+++|+||+|+.+.+.+..++...+++..+++++++||++|.|++++|++|
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l  161 (169)
T 3q85_A           82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGA  161 (169)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred             EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHHH
Confidence            9999999999999999998877643 589999999999998888888999999999999999999999999999999999


Q ss_pred             Hhhcccc
Q 030364          168 GDCTECF  174 (178)
Q Consensus       168 ~~~i~~~  174 (178)
                      .+.+...
T Consensus       162 ~~~i~~~  168 (169)
T 3q85_A          162 VRQIRLR  168 (169)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHhc
Confidence            9987654

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=100.00  E-value=2.5e-36  Score=204.42  Aligned_cols=166  Identities=24%  Similarity=0.406  Sum_probs=143.0

Q ss_pred             CCCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcE
Q 030364            6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAA   85 (178)
Q Consensus         6 ~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~   85 (178)
                      ...+.+||+++|.+|+|||||+++|.++.+...+.++.+..+ .....+++..+.+.+||++|++.+... ..+++.+|+
T Consensus        17 ~~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~   94 (187)
T 3c5c_A           17 QGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHA   94 (187)
T ss_dssp             ---CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSE
T ss_pred             CCCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCE
Confidence            345689999999999999999999999998887888887666 445677888999999999999888775 678999999


Q ss_pred             EEEEEECCCHhHHHHHHHHHHHHHHhC---CCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeC-CCCCCHH
Q 030364           86 AVVVYDITSMDSFERAKKWVQELQRQG---NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSA-KSAHNVN  161 (178)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa-~~~~~i~  161 (178)
                      +++|||++++++++.+..|+..+....   ..+.|+++|+||+|+.+.+.+..++...+++.++++++++|| ++|.|++
T Consensus        95 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv~  174 (187)
T 3c5c_A           95 FLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQ  174 (187)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECCSSSCSHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEeecCccccHH
Confidence            999999999999999999998887653   268999999999999887888888999999999999999999 8999999


Q ss_pred             HHHHHHHhhccc
Q 030364          162 ELFYEIGDCTEC  173 (178)
Q Consensus       162 ~~~~~l~~~i~~  173 (178)
                      ++|++|++.+.+
T Consensus       175 ~lf~~l~~~i~~  186 (187)
T 3c5c_A          175 HVFHEAVREARR  186 (187)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhh
Confidence            999999988753

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=100.00  E-value=9.4e-36  Score=199.56  Aligned_cols=167  Identities=32%  Similarity=0.576  Sum_probs=145.8

Q ss_pred             CCCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcE
Q 030364            6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAA   85 (178)
Q Consensus         6 ~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~   85 (178)
                      ...+.++|+++|.+|+|||||++++.++.+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus         3 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~   82 (177)
T 1wms_A            3 GKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDC   82 (177)
T ss_dssp             CCEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSE
T ss_pred             CccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCE
Confidence            45678999999999999999999999999888788888888888888899988999999999999999999999999999


Q ss_pred             EEEEEECCCHhHHHHHHHHHHHHHHhCC----CCceEEEEEeCCCCccccccCHHHHHHHHH-HcCCeEEEEeCCCCCCH
Q 030364           86 AVVVYDITSMDSFERAKKWVQELQRQGN----PNLIMFLVANKVDLEEKRKVKNEEGELYAQ-ENGLSFLETSAKSAHNV  160 (178)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i  160 (178)
                      +++|||++++.+++.+..|+..+.....    .+.|+++|+||+|+. .+.+..++...+++ ..+++++++||++|.|+
T Consensus        83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  161 (177)
T 1wms_A           83 CLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS-ERQVSTEEAQAWCRDNGDYPYFETSAKDATNV  161 (177)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS-SCSSCHHHHHHHHHHTTCCCEEECCTTTCTTH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCH
Confidence            9999999999999999999988876543    678999999999987 45667778888887 56789999999999999


Q ss_pred             HHHHHHHHhhccc
Q 030364          161 NELFYEIGDCTEC  173 (178)
Q Consensus       161 ~~~~~~l~~~i~~  173 (178)
                      +++|++|.+.+.+
T Consensus       162 ~~l~~~l~~~~~~  174 (177)
T 1wms_A          162 AAAFEEAVRRVLA  174 (177)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999988753

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=100.00  E-value=8.4e-36  Score=202.44  Aligned_cols=168  Identities=32%  Similarity=0.555  Sum_probs=150.2

Q ss_pred             CCCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEE-EEEEEeCCe---------EEEEEEEeCCCchhhhcc
Q 030364            6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFF-TQVLSLNEV---------TIKFDIWDTAGQERYHSL   75 (178)
Q Consensus         6 ~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~---------~~~~~i~d~~g~~~~~~~   75 (178)
                      +.++.+||+++|.+|+|||||+++|.++.+...+.++.+.++. ......++.         .+.+.+||+||++.+...
T Consensus         7 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~   86 (195)
T 3bc1_A            7 DYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSL   86 (195)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHH
T ss_pred             ccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHH
Confidence            4566899999999999999999999999988778888887776 566666665         789999999999999999


Q ss_pred             chhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCC-CCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeC
Q 030364           76 APMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGN-PNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSA  154 (178)
Q Consensus        76 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  154 (178)
                      +..+++.+|++++|||++++.+++.+..|+..+..... .+.|+++|+||+|+.+.+.+..++...++...+++++++||
T Consensus        87 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa  166 (195)
T 3bc1_A           87 TTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSA  166 (195)
T ss_dssp             HHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECCT
T ss_pred             HHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCCEEEEEC
Confidence            99999999999999999999999999999998887654 78999999999999887778888888999999999999999


Q ss_pred             CCCCCHHHHHHHHHhhccc
Q 030364          155 KSAHNVNELFYEIGDCTEC  173 (178)
Q Consensus       155 ~~~~~i~~~~~~l~~~i~~  173 (178)
                      ++|.|++++|++|.+.+.+
T Consensus       167 ~~~~~v~~l~~~l~~~~~~  185 (195)
T 3bc1_A          167 ANGTNISHAIEMLLDLIMK  185 (195)
T ss_dssp             TTCTTHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHH
Confidence            9999999999999987754

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=100.00  E-value=1.3e-35  Score=200.46  Aligned_cols=164  Identities=18%  Similarity=0.321  Sum_probs=142.3

Q ss_pred             CCCCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCc
Q 030364            5 SNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAA   84 (178)
Q Consensus         5 ~~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d   84 (178)
                      ..+.+.+||+++|.+|||||||+++++++.+...+.++.+  .....+.+++..+.+.+||++|++.+.     +++.+|
T Consensus        15 ~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~--~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~   87 (184)
T 3ihw_A           15 YFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGG--RFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVD   87 (184)
T ss_dssp             -CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCE--EEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCS
T ss_pred             CCCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcc--eEEEEEEECCEEEEEEEEECCCChhhh-----eecCCC
Confidence            3445689999999999999999999999998877777633  334777889999999999999998776     778899


Q ss_pred             EEEEEEECCCHhHHHHHHHHHHHHHHhCC-CCceEEEEEeCCCCc--cccccCHHHHHHHHHHcC-CeEEEEeCCCCCCH
Q 030364           85 AAVVVYDITSMDSFERAKKWVQELQRQGN-PNLIMFLVANKVDLE--EKRKVKNEEGELYAQENG-LSFLETSAKSAHNV  160 (178)
Q Consensus        85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~ivv~nK~D~~--~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i  160 (178)
                      ++++|||++++++++.+..|+..+..... .+.|+++|+||+|+.  ..+.+..++...+++.++ ++++++||++|.|+
T Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gv  167 (184)
T 3ihw_A           88 AVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNV  167 (184)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBTH
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCCCH
Confidence            99999999999999999999999987653 688999999999994  566778888999999987 89999999999999


Q ss_pred             HHHHHHHHhhccccc
Q 030364          161 NELFYEIGDCTECFS  175 (178)
Q Consensus       161 ~~~~~~l~~~i~~~~  175 (178)
                      +++|++|++.+.+.+
T Consensus       168 ~~lf~~l~~~i~~~~  182 (184)
T 3ihw_A          168 ERVFQDVAQKVVALR  182 (184)
T ss_dssp             HHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999876554

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=100.00  E-value=5.7e-36  Score=200.19  Aligned_cols=167  Identities=32%  Similarity=0.388  Sum_probs=135.9

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchh--hhccchhhhcCCcE
Q 030364            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER--YHSLAPMYYRGAAA   85 (178)
Q Consensus         8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~--~~~~~~~~~~~~d~   85 (178)
                      .+.+||+++|++|+|||||+++|.++.+... .++.+.+.....+.+++..+.+.+||+||++.  +......+++.+|+
T Consensus         2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~   80 (175)
T 2nzj_A            2 MALYRVVLLGDPGVGKTSLASLFAGKQERDL-HEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSA   80 (175)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHCC------CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSE
T ss_pred             ceEEEEEEECCCCccHHHHHHHHhcCCCccc-cCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCE
Confidence            3579999999999999999999998876543 34566666677788899889999999999987  55666778899999


Q ss_pred             EEEEEECCCHhHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Q 030364           86 AVVVYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELF  164 (178)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  164 (178)
                      +++|||++++++++.+..|+..+.... ..+.|+++|+||+|+.+.+++..++...++..++++++++||++|.|++++|
T Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~  160 (175)
T 2nzj_A           81 YVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELF  160 (175)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHH
Confidence            999999999999999999988887653 4589999999999998877788888888888899999999999999999999


Q ss_pred             HHHHhhccccc
Q 030364          165 YEIGDCTECFS  175 (178)
Q Consensus       165 ~~l~~~i~~~~  175 (178)
                      ++|.+.+...+
T Consensus       161 ~~l~~~~~~~~  171 (175)
T 2nzj_A          161 EGVVRQLRLRR  171 (175)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhh
Confidence            99999886543

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=100.00  E-value=1.4e-35  Score=201.66  Aligned_cols=169  Identities=30%  Similarity=0.491  Sum_probs=147.2

Q ss_pred             CCCCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCc
Q 030364            5 SNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAA   84 (178)
Q Consensus         5 ~~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d   84 (178)
                      ....+.+||+++|.+|+|||||++++.++.+...+.++.+..+.. ....++..+.+.+||+||++.+...+..+++.+|
T Consensus        18 ~~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d   96 (194)
T 3reg_A           18 ENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSH-VMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSD   96 (194)
T ss_dssp             ---CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEE-EEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCS
T ss_pred             cccceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEE-EEEECCEEEEEEEEECCCcHHHHHHhHhhccCCc
Confidence            344568999999999999999999999999888788888776653 5678888999999999999999999999999999


Q ss_pred             EEEEEEECCCHhHHHHH-HHHHHHHHHhCCCCceEEEEEeCCCCccc--cccCHHHHHHHHHHcCCe-EEEEeCCCCCCH
Q 030364           85 AAVVVYDITSMDSFERA-KKWVQELQRQGNPNLIMFLVANKVDLEEK--RKVKNEEGELYAQENGLS-FLETSAKSAHNV  160 (178)
Q Consensus        85 ~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~ivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i  160 (178)
                      ++++|||++++++++.+ ..|+..+... .++.|+++|+||+|+...  +.+..++...+++.++++ ++++||++|.|+
T Consensus        97 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  175 (194)
T 3reg_A           97 VVLLCFAVNNRTSFDNISTKWEPEIKHY-IDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGL  175 (194)
T ss_dssp             EEEEEEETTCHHHHHHHHHTHHHHHHHH-CTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBSH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHHh-CCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCCH
Confidence            99999999999999997 6777777655 568999999999999753  667788899999999988 999999999999


Q ss_pred             HHHHHHHHhhccccc
Q 030364          161 NELFYEIGDCTECFS  175 (178)
Q Consensus       161 ~~~~~~l~~~i~~~~  175 (178)
                      +++|++|.+.+...+
T Consensus       176 ~~l~~~l~~~i~~~~  190 (194)
T 3reg_A          176 NEVFEKSVDCIFSNK  190 (194)
T ss_dssp             HHHHHHHHHHHHCSC
T ss_pred             HHHHHHHHHHHHhcC
Confidence            999999999886544

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=100.00  E-value=2.7e-36  Score=206.36  Aligned_cols=168  Identities=29%  Similarity=0.446  Sum_probs=145.1

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEE
Q 030364            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA   86 (178)
Q Consensus         7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~   86 (178)
                      ..+.+||+++|.+|+|||||+++|.++.+...+.++.+..+ ......++..+.+.+||+||++.+...+..+++.+|++
T Consensus        21 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   99 (201)
T 3oes_A           21 LVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGY   99 (201)
T ss_dssp             --CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEE
T ss_pred             CCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEE
Confidence            34689999999999999999999999998887888877766 66666777788999999999999999999999999999


Q ss_pred             EEEEECCCHhHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Q 030364           87 VVVYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFY  165 (178)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  165 (178)
                      ++|||++++++++.+..|+..+.... ..+.|+++|+||+|+...+.+...+...+++..+++++++||++|.|++++|+
T Consensus       100 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~  179 (201)
T 3oes_A          100 VLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFT  179 (201)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHH
T ss_pred             EEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHH
Confidence            99999999999999999999887653 35789999999999988888888999999999999999999999999999999


Q ss_pred             HHHhhccccc
Q 030364          166 EIGDCTECFS  175 (178)
Q Consensus       166 ~l~~~i~~~~  175 (178)
                      +|.+.+....
T Consensus       180 ~l~~~i~~~~  189 (201)
T 3oes_A          180 KVIQEIARVE  189 (201)
T ss_dssp             HHHHHHHHC-
T ss_pred             HHHHHHHhhh
Confidence            9999886553

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=100.00  E-value=6.4e-36  Score=206.46  Aligned_cols=167  Identities=25%  Similarity=0.438  Sum_probs=145.2

Q ss_pred             CCCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcE
Q 030364            6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAA   85 (178)
Q Consensus         6 ~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~   85 (178)
                      .....+||+++|.+|+|||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+||++|++.+...+..+++.+|+
T Consensus        23 ~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~  101 (214)
T 3q3j_B           23 PVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDA  101 (214)
T ss_dssp             ----CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred             CccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeE
Confidence            334689999999999999999999999999888888888776 4556777888999999999999999999999999999


Q ss_pred             EEEEEECCCHhHHHH-HHHHHHHHHHhCCCCceEEEEEeCCCCccc------------cccCHHHHHHHHHHcCC-eEEE
Q 030364           86 AVVVYDITSMDSFER-AKKWVQELQRQGNPNLIMFLVANKVDLEEK------------RKVKNEEGELYAQENGL-SFLE  151 (178)
Q Consensus        86 ~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~  151 (178)
                      +|+|||++++++++. +..|+..+... .++.|+++|+||+|+...            +.+..++...+++.+++ ++++
T Consensus       102 ~i~v~d~~~~~s~~~~~~~~~~~i~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e  180 (214)
T 3q3j_B          102 VLLCFDISRPETVDSALKKWRTEILDY-CPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLE  180 (214)
T ss_dssp             EEEEEETTCTHHHHHHHTHHHHHHHHH-CTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEEE
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHHh-CCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEEE
Confidence            999999999999999 68898888876 468999999999999763            56888899999999999 9999


Q ss_pred             EeCCCCCC-HHHHHHHHHhhcccc
Q 030364          152 TSAKSAHN-VNELFYEIGDCTECF  174 (178)
Q Consensus       152 ~Sa~~~~~-i~~~~~~l~~~i~~~  174 (178)
                      |||++|.| ++++|++|++.+...
T Consensus       181 ~SA~~g~g~v~~lf~~l~~~~~~~  204 (214)
T 3q3j_B          181 GSAFTSEKSIHSIFRTASMLCLNK  204 (214)
T ss_dssp             CCTTTCHHHHHHHHHHHHHHHHC-
T ss_pred             eccCCCcccHHHHHHHHHHHHhcc
Confidence            99999998 999999999987644

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=100.00  E-value=1.3e-35  Score=196.91  Aligned_cols=163  Identities=33%  Similarity=0.562  Sum_probs=144.8

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEE
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVV   88 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~   88 (178)
                      +.+||+++|.+|+|||||++++.++.+...+.++.+... ......++..+.+.+||+||++.+...+..+++.+|++++
T Consensus         2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   80 (167)
T 1c1y_A            2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFAL   80 (167)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEE
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceE-EEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence            468999999999999999999999988877777777655 3556678888999999999999999999999999999999


Q ss_pred             EEECCCHhHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCccccccCHHHHHHHHHHc-CCeEEEEeCCCCCCHHHHHHH
Q 030364           89 VYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQEN-GLSFLETSAKSAHNVNELFYE  166 (178)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~~~~  166 (178)
                      |||++++++++.+..|+..+.... ..+.|+++|+||+|+.+.+.+..++...+++.+ +++++++||++|.|+++++++
T Consensus        81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  160 (167)
T 1c1y_A           81 VYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYD  160 (167)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHHH
Confidence            999999999999999988887643 468999999999999887778888888888887 799999999999999999999


Q ss_pred             HHhhcc
Q 030364          167 IGDCTE  172 (178)
Q Consensus       167 l~~~i~  172 (178)
                      |.+.+.
T Consensus       161 l~~~i~  166 (167)
T 1c1y_A          161 LVRQIN  166 (167)
T ss_dssp             HHHHHT
T ss_pred             HHHHHh
Confidence            998764

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=100.00  E-value=1.9e-35  Score=196.21  Aligned_cols=164  Identities=32%  Similarity=0.546  Sum_probs=143.5

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEE
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVV   88 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~   88 (178)
                      +.+||+++|.+|+|||||++++.++.+...+.++.+... ......++..+.+.+||+||++.+...+..+++.+|++++
T Consensus         3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   81 (168)
T 1u8z_A            3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC   81 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEE-EEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEE
Confidence            478999999999999999999999988777777776555 3455778888999999999999999999999999999999


Q ss_pred             EEECCCHhHHHHHHHHHHHHHHhCC-CCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Q 030364           89 VYDITSMDSFERAKKWVQELQRQGN-PNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI  167 (178)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  167 (178)
                      |||++++++++.+..|+..+..... .+.|+++|+||+|+.+.+++..++...+++.++++++++||++|.|++++|++|
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  161 (168)
T 1u8z_A           82 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDL  161 (168)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHH
Confidence            9999999999999999988877543 589999999999998877788888899999999999999999999999999999


Q ss_pred             Hhhccc
Q 030364          168 GDCTEC  173 (178)
Q Consensus       168 ~~~i~~  173 (178)
                      .+.+.+
T Consensus       162 ~~~i~~  167 (168)
T 1u8z_A          162 MREIRA  167 (168)
T ss_dssp             HHHHHT
T ss_pred             HHHHHh
Confidence            988753

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=100.00  E-value=9.1e-36  Score=197.69  Aligned_cols=163  Identities=28%  Similarity=0.330  Sum_probs=123.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEE
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVV   89 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v   89 (178)
                      .+||+++|.+|+|||||++++.+..... ..++.+.++ ......++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus         2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v   79 (166)
T 3q72_A            2 VYKVLLLGAPGVGKSALARIFGGVEDGP-EAEAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIV   79 (166)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHCCC-----------CEE-EEEEEETTEEEEEEEEECC---------------CCEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHcCccccC-CCCccccce-EEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEE
Confidence            6899999999999999999998665443 444555444 45667888899999999999999999999999999999999


Q ss_pred             EECCCHhHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Q 030364           90 YDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIG  168 (178)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  168 (178)
                      ||++++++++.+..|+..+.... .++.|+++|+||+|+.+.+.+..++...++...+++++++||++|.|++++|++|.
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  159 (166)
T 3q72_A           80 YSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVV  159 (166)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHHH
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Confidence            99999999999999998887753 46899999999999988888888899999999999999999999999999999999


Q ss_pred             hhcccc
Q 030364          169 DCTECF  174 (178)
Q Consensus       169 ~~i~~~  174 (178)
                      +.+...
T Consensus       160 ~~~~~~  165 (166)
T 3q72_A          160 RQIRLR  165 (166)
T ss_dssp             HHHHHH
T ss_pred             HHHHhc
Confidence            987654

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=100.00  E-value=1.8e-35  Score=199.71  Aligned_cols=169  Identities=31%  Similarity=0.528  Sum_probs=148.0

Q ss_pred             CCCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcE
Q 030364            6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAA   85 (178)
Q Consensus         6 ~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~   85 (178)
                      ...+.+||+++|.+|+|||||+++|.++.+...+.++.+... ...+..++..+.+.+||+||++.+...+..+++.+|+
T Consensus        14 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   92 (187)
T 2a9k_A           14 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEG   92 (187)
T ss_dssp             ---CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSE
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEE-EEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCE
Confidence            344689999999999999999999999988777777776555 4456778888999999999999999999999999999


Q ss_pred             EEEEEECCCHhHHHHHHHHHHHHHHhCC-CCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Q 030364           86 AVVVYDITSMDSFERAKKWVQELQRQGN-PNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELF  164 (178)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  164 (178)
                      +++|||++++++++.+..|+..+..... .+.|+++|+||+|+.+.+.+..++...+++.++++++++||++|.|++++|
T Consensus        93 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  172 (187)
T 2a9k_A           93 FLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVF  172 (187)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHH
Confidence            9999999999999999999988877543 589999999999998877788888899999999999999999999999999


Q ss_pred             HHHHhhccccc
Q 030364          165 YEIGDCTECFS  175 (178)
Q Consensus       165 ~~l~~~i~~~~  175 (178)
                      ++|.+.+...+
T Consensus       173 ~~l~~~i~~~~  183 (187)
T 2a9k_A          173 FDLMREIRARK  183 (187)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhh
Confidence            99999886544

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=100.00  E-value=2.9e-35  Score=202.75  Aligned_cols=165  Identities=38%  Similarity=0.718  Sum_probs=148.8

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEE
Q 030364            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (178)
Q Consensus         8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i   87 (178)
                      ...++|+|+|.+|+|||||+++|.++.+...+.++.+.++....+.+++..+.+.+||+||++.+...+..++..+|+++
T Consensus        18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   97 (213)
T 3cph_A           18 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGII   97 (213)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEEE
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence            45799999999999999999999999988778888888888888888998899999999999999999999999999999


Q ss_pred             EEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Q 030364           88 VVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI  167 (178)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  167 (178)
                      +|||++++.+++.+..|+..+......+.|+++|+||+|+ ..+.+..++...+++.++++++++||++|.|++++|++|
T Consensus        98 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  176 (213)
T 3cph_A           98 LVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTL  176 (213)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTC-SSCCSCHHHHHHHHHHHTCCEEECBTTTTBSSHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCC-cccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence            9999999999999999999988876678999999999999 445666778888888899999999999999999999999


Q ss_pred             Hhhccc
Q 030364          168 GDCTEC  173 (178)
Q Consensus       168 ~~~i~~  173 (178)
                      .+.+..
T Consensus       177 ~~~~~~  182 (213)
T 3cph_A          177 AKLIQE  182 (213)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            987653

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=100.00  E-value=1.2e-35  Score=196.94  Aligned_cols=164  Identities=34%  Similarity=0.544  Sum_probs=146.1

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEE
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVV   88 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~   88 (178)
                      +.+||+++|++|+|||||++++.++.+...+.++.+... .....+++..+.+.+||+||++.+...+..+++.+|++++
T Consensus         2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~   80 (167)
T 1kao_A            2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFY-RKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIL   80 (167)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEE
Confidence            368999999999999999999999988877777766444 5667788888999999999999999999999999999999


Q ss_pred             EEECCCHhHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Q 030364           89 VYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI  167 (178)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  167 (178)
                      |||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+++..++...+++..+++++++||++|.|+++++++|
T Consensus        81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  160 (167)
T 1kao_A           81 VYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEI  160 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHH
T ss_pred             EEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHHH
Confidence            999999999999999988887653 3689999999999998877888888889999999999999999999999999999


Q ss_pred             Hhhccc
Q 030364          168 GDCTEC  173 (178)
Q Consensus       168 ~~~i~~  173 (178)
                      .+.+.+
T Consensus       161 ~~~~~~  166 (167)
T 1kao_A          161 VRQMNY  166 (167)
T ss_dssp             HHHHHH
T ss_pred             HHHHhh
Confidence            987753

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=100.00  E-value=9.8e-36  Score=205.80  Aligned_cols=167  Identities=31%  Similarity=0.559  Sum_probs=147.8

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCe----------EEEEEEEeCCCchhhhccc
Q 030364            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEV----------TIKFDIWDTAGQERYHSLA   76 (178)
Q Consensus         7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~i~d~~g~~~~~~~~   76 (178)
                      .+..+||+|+|.+|+|||||+++|.++.+...+.++.+.++....+.+++.          .+.+.+||+||++.+...+
T Consensus        22 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~  101 (217)
T 2f7s_A           22 YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLT  101 (217)
T ss_dssp             CSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHH
T ss_pred             cceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHH
Confidence            456899999999999999999999998887777777777777777777665          7899999999999999999


Q ss_pred             hhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCC-CCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCC
Q 030364           77 PMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGN-PNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAK  155 (178)
Q Consensus        77 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  155 (178)
                      ..+++.+|++|+|||++++.+++.+..|+..+..... .+.|+++|+||+|+...+.+..++...+++..+++++++||+
T Consensus       102 ~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~  181 (217)
T 2f7s_A          102 TAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAA  181 (217)
T ss_dssp             HHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBTT
T ss_pred             HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCcEEEEECC
Confidence            9999999999999999999999999988887765543 689999999999998877888888999999999999999999


Q ss_pred             CCCCHHHHHHHHHhhccc
Q 030364          156 SAHNVNELFYEIGDCTEC  173 (178)
Q Consensus       156 ~~~~i~~~~~~l~~~i~~  173 (178)
                      +|.|++++|++|.+.+..
T Consensus       182 ~g~gi~~l~~~l~~~i~~  199 (217)
T 2f7s_A          182 TGQNVEKAVETLLDLIMK  199 (217)
T ss_dssp             TTBTHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHH
Confidence            999999999999987653

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=100.00  E-value=4.3e-35  Score=200.82  Aligned_cols=166  Identities=31%  Similarity=0.538  Sum_probs=148.3

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEE
Q 030364            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA   86 (178)
Q Consensus         7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~   86 (178)
                      +.+.++|+|+|.+|+|||||+++|.++.+...+.++.+... ...+.+++..+.+.+||+||++.+...+..++..+|++
T Consensus        11 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~   89 (206)
T 2bov_A           11 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGF   89 (206)
T ss_dssp             CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEE
Confidence            34579999999999999999999999988777777777655 45567788889999999999999999999999999999


Q ss_pred             EEEEECCCHhHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Q 030364           87 VVVYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFY  165 (178)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  165 (178)
                      ++|||++++++++.+..|+..+.... ..+.|+++|+||+|+.+.+++..++...+++.++++++++||++|.|++++|+
T Consensus        90 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~  169 (206)
T 2bov_A           90 LCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFF  169 (206)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHH
Confidence            99999999999999999998888764 35899999999999988778888888999999999999999999999999999


Q ss_pred             HHHhhccc
Q 030364          166 EIGDCTEC  173 (178)
Q Consensus       166 ~l~~~i~~  173 (178)
                      +|.+.+..
T Consensus       170 ~l~~~i~~  177 (206)
T 2bov_A          170 DLMREIRA  177 (206)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99988754

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=4.2e-35  Score=199.20  Aligned_cols=165  Identities=37%  Similarity=0.663  Sum_probs=149.3

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEE
Q 030364            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (178)
Q Consensus         8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i   87 (178)
                      .+.+||+++|.+|+|||||+++|.++.+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus        13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii   92 (195)
T 1x3s_A           13 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVI   92 (195)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEE
Confidence            35799999999999999999999999988888888888888888889999999999999999999999999999999999


Q ss_pred             EEEECCCHhHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Q 030364           88 VVYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYE  166 (178)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  166 (178)
                      +|||++++.+++.+..|+..+.... ..+.|+++|+||+|+. .+.+..++...+++..+++++++||++|.|++++|++
T Consensus        93 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  171 (195)
T 1x3s_A           93 LVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE-NREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEE  171 (195)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSS-SCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCc-ccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHH
Confidence            9999999999999999988887654 3679999999999984 3556677888899999999999999999999999999


Q ss_pred             HHhhccc
Q 030364          167 IGDCTEC  173 (178)
Q Consensus       167 l~~~i~~  173 (178)
                      |.+.+..
T Consensus       172 l~~~~~~  178 (195)
T 1x3s_A          172 LVEKIIQ  178 (195)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHh
Confidence            9998754

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=100.00  E-value=7.8e-35  Score=199.19  Aligned_cols=164  Identities=48%  Similarity=0.813  Sum_probs=145.1

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeE----------------------------
Q 030364            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVT----------------------------   58 (178)
Q Consensus         7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------   58 (178)
                      .++.+||+|+|.+|+|||||+++|+++.+...+.++.+.++....+.+++..                            
T Consensus         4 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (208)
T 3clv_A            4 KKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQH   83 (208)
T ss_dssp             CCSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC------------------------------
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccccc
Confidence            4568999999999999999999999999888888888888877777776655                            


Q ss_pred             ---------EEEEEEeCCCchhhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcc
Q 030364           59 ---------IKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEE  129 (178)
Q Consensus        59 ---------~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~  129 (178)
                               +.+.+||+||++.+...+..+++.+|++++|+|++++.+++.+..|+..+....  ..|+++|+||+| ..
T Consensus        84 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~--~~piilv~NK~D-~~  160 (208)
T 3clv_A           84 NNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISS--NYIIILVANKID-KN  160 (208)
T ss_dssp             -CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS--CCEEEEEEECTT-CC
T ss_pred             ccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhC--CCcEEEEEECCC-cc
Confidence                     889999999999999999999999999999999999999999999998888764  389999999999 55


Q ss_pred             ccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHhhccc
Q 030364          130 KRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIGDCTEC  173 (178)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~~  173 (178)
                      .+.+..++...+++..+++++++||++|.|++++|++|.+.+.+
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~  204 (208)
T 3clv_A          161 KFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYK  204 (208)
T ss_dssp             -CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred             cccCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHH
Confidence            56777788899999999999999999999999999999987753

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=100.00  E-value=1.6e-35  Score=199.06  Aligned_cols=169  Identities=37%  Similarity=0.625  Sum_probs=133.6

Q ss_pred             CCCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeC-CeEEEEEEEeCCCchhhhccchhhhcCCc
Q 030364            6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLN-EVTIKFDIWDTAGQERYHSLAPMYYRGAA   84 (178)
Q Consensus         6 ~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~d~~g~~~~~~~~~~~~~~~d   84 (178)
                      .+.+.++|+++|++|+|||||++++.++.+...+.++.+.+.....+.++ +..+.+.+||+||++.+...+..+++.+|
T Consensus         4 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   83 (182)
T 1ky3_A            4 RKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGAD   83 (182)
T ss_dssp             ---CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCC
T ss_pred             ccCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCC
Confidence            34568999999999999999999999999888788888877777777776 56688999999999999999999999999


Q ss_pred             EEEEEEECCCHhHHHHHHHHHHHHHHhCC----CCceEEEEEeCCCCcc-ccccCHHHHHHHHH-HcCCeEEEEeCCCCC
Q 030364           85 AAVVVYDITSMDSFERAKKWVQELQRQGN----PNLIMFLVANKVDLEE-KRKVKNEEGELYAQ-ENGLSFLETSAKSAH  158 (178)
Q Consensus        85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~~~ivv~nK~D~~~-~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~  158 (178)
                      ++++|||++++.+++.+..|+..+.....    .+.|+++|+||+|+.. .+.+..++...+++ ..+++++++||++|.
T Consensus        84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~  163 (182)
T 1ky3_A           84 CCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAI  163 (182)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTB
T ss_pred             EEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEecCCCC
Confidence            99999999999999999999988876543    6889999999999954 34566777888887 567899999999999


Q ss_pred             CHHHHHHHHHhhcccc
Q 030364          159 NVNELFYEIGDCTECF  174 (178)
Q Consensus       159 ~i~~~~~~l~~~i~~~  174 (178)
                      |++++|++|.+.+.+.
T Consensus       164 gi~~l~~~l~~~~~~~  179 (182)
T 1ky3_A          164 NVDTAFEEIARSALQQ  179 (182)
T ss_dssp             SHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHh
Confidence            9999999999887543

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=3.8e-35  Score=199.55  Aligned_cols=163  Identities=26%  Similarity=0.470  Sum_probs=143.4

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEE
Q 030364            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (178)
Q Consensus         8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i   87 (178)
                      .+.+||+++|.+|+|||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus        16 ~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   94 (194)
T 2atx_A           16 ALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFL   94 (194)
T ss_dssp             EEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEE
Confidence            4689999999999999999999999988877777776655 445667888899999999999999999999999999999


Q ss_pred             EEEECCCHhHHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCccc------------cccCHHHHHHHHHHcCC-eEEEEe
Q 030364           88 VVYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEEK------------RKVKNEEGELYAQENGL-SFLETS  153 (178)
Q Consensus        88 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~S  153 (178)
                      +|||++++++++.+. .|+..+... .++.|+++|+||+|+...            +.+..++...+++.+++ +++++|
T Consensus        95 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  173 (194)
T 2atx_A           95 ICFSVVNPASFQNVKEEWVPELKEY-APNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECS  173 (194)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHH-STTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECC
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHh-CCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEEEee
Confidence            999999999999987 788888776 358999999999999653            35677888889998887 999999


Q ss_pred             CCCCCCHHHHHHHHHhhcc
Q 030364          154 AKSAHNVNELFYEIGDCTE  172 (178)
Q Consensus       154 a~~~~~i~~~~~~l~~~i~  172 (178)
                      |++|.|++++|++|.+.+.
T Consensus       174 a~~g~gi~~l~~~l~~~i~  192 (194)
T 2atx_A          174 ALTQKGLKTVFDEAIIAIL  192 (194)
T ss_dssp             TTTCTTHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHh
Confidence            9999999999999998764

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=100.00  E-value=4.9e-35  Score=200.75  Aligned_cols=167  Identities=37%  Similarity=0.662  Sum_probs=146.4

Q ss_pred             CCCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcE
Q 030364            6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAA   85 (178)
Q Consensus         6 ~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~   85 (178)
                      ...+.++|+|+|.+|+|||||+++|.++.+...+.++.+.+.....+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus         4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   83 (207)
T 1vg8_A            4 RKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADC   83 (207)
T ss_dssp             ---CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSE
T ss_pred             ccCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcE
Confidence            35568999999999999999999999999888888888888888888888888999999999999999999999999999


Q ss_pred             EEEEEECCCHhHHHHHHHHHHHHHHhCC----CCceEEEEEeCCCCccccccCHHHHHHHHH-HcCCeEEEEeCCCCCCH
Q 030364           86 AVVVYDITSMDSFERAKKWVQELQRQGN----PNLIMFLVANKVDLEEKRKVKNEEGELYAQ-ENGLSFLETSAKSAHNV  160 (178)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i  160 (178)
                      +|+|||++++.+++.+..|+..+.....    .+.|+++|+||+|+. .+.+..++...++. ..+++++++||++|.|+
T Consensus        84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi  162 (207)
T 1vg8_A           84 CVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE-NRQVATKRAQAWCYSKNNIPYFETSAKEAINV  162 (207)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS-CCCSCHHHHHHHHHHTTSCCEEECBTTTTBSH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCH
Confidence            9999999999999999999888776532    578999999999997 44556677777777 67789999999999999


Q ss_pred             HHHHHHHHhhccc
Q 030364          161 NELFYEIGDCTEC  173 (178)
Q Consensus       161 ~~~~~~l~~~i~~  173 (178)
                      +++|++|.+.+..
T Consensus       163 ~~l~~~l~~~~~~  175 (207)
T 1vg8_A          163 EQAFQTIARNALK  175 (207)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999987753

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=100.00  E-value=4.3e-35  Score=196.66  Aligned_cols=161  Identities=23%  Similarity=0.339  Sum_probs=136.2

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEE
Q 030364            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA   86 (178)
Q Consensus         7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~   86 (178)
                      ..+.+||+++|.+|+|||||+++|.++.+.. +.++.+..+ ...+.+++..+.+.+||+||++.     ..+++.+|++
T Consensus         4 ~~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~   76 (178)
T 2iwr_A            4 SIPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQY-KKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAV   76 (178)
T ss_dssp             CCCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEE-EEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEE
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeE-EEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEE
Confidence            3568999999999999999999999998876 667766444 56677888889999999999865     4678889999


Q ss_pred             EEEEECCCHhHHHHHHHHHHHHHHh---CCCCceEEEEEeCCCCc--cccccCHHHHHHHHHHc-CCeEEEEeCCCCCCH
Q 030364           87 VVVYDITSMDSFERAKKWVQELQRQ---GNPNLIMFLVANKVDLE--EKRKVKNEEGELYAQEN-GLSFLETSAKSAHNV  160 (178)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~---~~~~~~~ivv~nK~D~~--~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i  160 (178)
                      ++|||++++++++.+..|+..+...   ..++.|+++|+||+|+.  ..+.+..++...+++.. +++++++||++|.|+
T Consensus        77 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  156 (178)
T 2iwr_A           77 IFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNV  156 (178)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccCCH
Confidence            9999999999999999876665543   23689999999999994  45667778888888776 689999999999999


Q ss_pred             HHHHHHHHhhcccc
Q 030364          161 NELFYEIGDCTECF  174 (178)
Q Consensus       161 ~~~~~~l~~~i~~~  174 (178)
                      +++|++|.+.+.+.
T Consensus       157 ~~lf~~l~~~~~~~  170 (178)
T 2iwr_A          157 DRVFQEVAQKVVTL  170 (178)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999887543

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=2.6e-35  Score=200.70  Aligned_cols=167  Identities=34%  Similarity=0.488  Sum_probs=146.3

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEE
Q 030364            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA   86 (178)
Q Consensus         7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~   86 (178)
                      +.+.+||+++|.+|+|||||+++|.++.+...+.++.+..+ .....+++..+.+.+||+||++. ...+..+++.+|++
T Consensus        25 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~i  102 (196)
T 2atv_A           25 KSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGF  102 (196)
T ss_dssp             --CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEE
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEE
Confidence            45689999999999999999999999998877777777655 45567788889999999999887 67778889999999


Q ss_pred             EEEEECCCHhHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCC-CHHHHH
Q 030364           87 VVVYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAH-NVNELF  164 (178)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-~i~~~~  164 (178)
                      ++|||++++++++.+..|+..+.... ..+.|+++|+||+|+...+.+..++...+++.++++++++||++|. |++++|
T Consensus       103 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~l~  182 (196)
T 2atv_A          103 VLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIF  182 (196)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEECCCcCCcCHHHHH
Confidence            99999999999999999988887753 4689999999999998877888888899999999999999999999 999999


Q ss_pred             HHHHhhccccc
Q 030364          165 YEIGDCTECFS  175 (178)
Q Consensus       165 ~~l~~~i~~~~  175 (178)
                      ++|.+.+.+.+
T Consensus       183 ~~l~~~i~~~~  193 (196)
T 2atv_A          183 YELCREVRRRR  193 (196)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHhhc
Confidence            99999886543

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=100.00  E-value=4.8e-35  Score=200.05  Aligned_cols=168  Identities=30%  Similarity=0.469  Sum_probs=137.1

Q ss_pred             CCCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcE
Q 030364            6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAA   85 (178)
Q Consensus         6 ~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~   85 (178)
                      ...+.+||+++|.+|+|||||++++.++.+...+.++.+..+ ...+..++..+.+.+||+||++.+...+..++..+|+
T Consensus        16 ~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~   94 (201)
T 2q3h_A           16 AEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDI   94 (201)
T ss_dssp             ----CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEE-EEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSE
T ss_pred             CCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcE
Confidence            445689999999999999999999999888777777776544 4556778888999999999999999999999999999


Q ss_pred             EEEEEECCCHhHHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCccc------------cccCHHHHHHHHHHcCC-eEEE
Q 030364           86 AVVVYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEEK------------RKVKNEEGELYAQENGL-SFLE  151 (178)
Q Consensus        86 ~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~  151 (178)
                      +++|||++++++++.+. .|+..+.... ++.|+++|+||+|+...            +.+..++...+++.+++ ++++
T Consensus        95 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  173 (201)
T 2q3h_A           95 FLLCFSVVSPSSFQNVSEKWVPEIRCHC-PKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIE  173 (201)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHC-SSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEE
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEEE
Confidence            99999999999999986 7888887763 58999999999998752            45677788888888887 9999


Q ss_pred             EeCCCCCCHHHHHHHHHhhccccc
Q 030364          152 TSAKSAHNVNELFYEIGDCTECFS  175 (178)
Q Consensus       152 ~Sa~~~~~i~~~~~~l~~~i~~~~  175 (178)
                      +||++|.|++++|++|.+.+.+.+
T Consensus       174 ~Sa~~g~gi~~l~~~l~~~~~~~~  197 (201)
T 2q3h_A          174 CSALTQKNLKEVFDAAIVAGIQYS  197 (201)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred             EecCCCCCHHHHHHHHHHHHhccc
Confidence            999999999999999999876543

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=5.2e-35  Score=194.87  Aligned_cols=166  Identities=33%  Similarity=0.456  Sum_probs=144.5

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEE
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVV   88 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~   88 (178)
                      ..+||+++|.+|+|||||++++.++.+...+.++.+..+ ......++..+.+.+||+||++.+...+..++..+|++++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~   80 (172)
T 2erx_A            2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL   80 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEE-EEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEE
Confidence            468999999999999999999999888766777666554 3445677888899999999999999999999999999999


Q ss_pred             EEECCCHhHHHHHHHHHHHHHHhC--CCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Q 030364           89 VYDITSMDSFERAKKWVQELQRQG--NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYE  166 (178)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  166 (178)
                      |||++++++++.+..|+..+....  .++.|+++|+||+|+...+++...+...++...+++++++||++|.|++++|++
T Consensus        81 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  160 (172)
T 2erx_A           81 VYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQE  160 (172)
T ss_dssp             EEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHHH
Confidence            999999999999988888877643  257899999999999887788888888888889999999999999999999999


Q ss_pred             HHhhccccc
Q 030364          167 IGDCTECFS  175 (178)
Q Consensus       167 l~~~i~~~~  175 (178)
                      |.+.+...+
T Consensus       161 l~~~~~~~~  169 (172)
T 2erx_A          161 LLNLEKRRT  169 (172)
T ss_dssp             HHHTCCSSC
T ss_pred             HHHHHhhhh
Confidence            999887654

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=100.00  E-value=5.9e-35  Score=197.14  Aligned_cols=165  Identities=30%  Similarity=0.524  Sum_probs=141.8

Q ss_pred             CCCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcE
Q 030364            6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAA   85 (178)
Q Consensus         6 ~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~   85 (178)
                      .+.+.+||+++|++|+|||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus         3 ~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~   81 (184)
T 1m7b_A            3 NQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDA   81 (184)
T ss_dssp             ---CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred             CCceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcE
Confidence            345689999999999999999999999998877778877665 3456778888999999999999999999999999999


Q ss_pred             EEEEEECCCHhHHHHH-HHHHHHHHHhCCCCceEEEEEeCCCCccc------------cccCHHHHHHHHHHcC-CeEEE
Q 030364           86 AVVVYDITSMDSFERA-KKWVQELQRQGNPNLIMFLVANKVDLEEK------------RKVKNEEGELYAQENG-LSFLE  151 (178)
Q Consensus        86 ~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~  151 (178)
                      +++|||++++++++.+ ..|+..+... .++.|+++|+||+|+.+.            +.+..++...+++.++ +++++
T Consensus        82 ~i~v~d~~~~~s~~~~~~~~~~~i~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e  160 (184)
T 1m7b_A           82 VLICFDISRPETLDSVLKKWKGEIQEF-CPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIE  160 (184)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHH-CTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEE
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHH-CCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEE
Confidence            9999999999999998 6788888765 368999999999999742            4577788888998887 79999


Q ss_pred             EeCC-CCCCHHHHHHHHHhhcc
Q 030364          152 TSAK-SAHNVNELFYEIGDCTE  172 (178)
Q Consensus       152 ~Sa~-~~~~i~~~~~~l~~~i~  172 (178)
                      +||+ ++.|++++|++|.+.+.
T Consensus       161 ~Sa~~~~~gi~~l~~~i~~~~l  182 (184)
T 1m7b_A          161 CSALQSENSVRDIFHVATLACV  182 (184)
T ss_dssp             CBTTTBHHHHHHHHHHHHHHHH
T ss_pred             eeecCCCcCHHHHHHHHHHHHh
Confidence            9999 68999999999998764

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=7e-35  Score=200.44  Aligned_cols=166  Identities=28%  Similarity=0.342  Sum_probs=138.3

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHHhCcC--CCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchh-hhccchhhhcCC
Q 030364            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQF--FDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER-YHSLAPMYYRGA   83 (178)
Q Consensus         7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~-~~~~~~~~~~~~   83 (178)
                      ..+.+||+++|.+|||||||+++|.+...  .. ..++.+.+.....+.+++..+.+.+||++|.+. +..+...+++.+
T Consensus        34 ~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~-~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a  112 (211)
T 2g3y_A           34 GNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDS-DCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVG  112 (211)
T ss_dssp             -CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCC-C---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCC
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCC-cCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhC
Confidence            35679999999999999999999986432  33 234455566667778899999999999999876 455667778899


Q ss_pred             cEEEEEEECCCHhHHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHH
Q 030364           84 AAAVVVYDITSMDSFERAKKWVQELQRQ-GNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNE  162 (178)
Q Consensus        84 d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  162 (178)
                      |++++|||++++++|+.+..|+..+... ..++.|+++|+||+|+.+.+.+..++...++..+++++++|||++|.|+++
T Consensus       113 ~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v~e  192 (211)
T 2g3y_A          113 DAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKE  192 (211)
T ss_dssp             SEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHH
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence            9999999999999999999998887653 235799999999999987777887888888888999999999999999999


Q ss_pred             HHHHHHhhccc
Q 030364          163 LFYEIGDCTEC  173 (178)
Q Consensus       163 ~~~~l~~~i~~  173 (178)
                      +|++|++.+..
T Consensus       193 lf~~l~~~i~~  203 (211)
T 2g3y_A          193 LFEGIVRQVRL  203 (211)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999998753

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=100.00  E-value=1.8e-34  Score=195.12  Aligned_cols=165  Identities=30%  Similarity=0.523  Sum_probs=142.6

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEE
Q 030364            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (178)
Q Consensus         8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i   87 (178)
                      ++.+||+++|.+|+|||||+++|.++.+...+.++.. +........++..+.+.+||+||++.+...+..++..+|+++
T Consensus         2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i   80 (189)
T 4dsu_A            2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL   80 (189)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCC-EEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCch-heEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence            4589999999999999999999999988777777664 444566678888999999999999999999999999999999


Q ss_pred             EEEECCCHhHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Q 030364           88 VVYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYE  166 (178)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  166 (178)
                      +|||++++++++.+..|+..+.... ..+.|+++|+||+|+.. .....+....+++.++++++++||++|.|++++|++
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~  159 (189)
T 4dsu_A           81 CVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS-RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYT  159 (189)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSS-CSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcc-cccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence            9999999999999999998887753 46899999999999874 556677888899999999999999999999999999


Q ss_pred             HHhhcccc
Q 030364          167 IGDCTECF  174 (178)
Q Consensus       167 l~~~i~~~  174 (178)
                      |.+.+...
T Consensus       160 l~~~~~~~  167 (189)
T 4dsu_A          160 LVREIRKH  167 (189)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99987643

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=100.00  E-value=1.5e-35  Score=205.01  Aligned_cols=171  Identities=29%  Similarity=0.489  Sum_probs=145.8

Q ss_pred             CCCCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeC-CeEEEEEEEeCCCchhhhccchhhhcCC
Q 030364            5 SNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLN-EVTIKFDIWDTAGQERYHSLAPMYYRGA   83 (178)
Q Consensus         5 ~~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~d~~g~~~~~~~~~~~~~~~   83 (178)
                      ......+||+++|.+|+|||||+++|+++.+...+.++.+.+......... +..+.+.+||+||++.+...+..++..+
T Consensus         6 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   85 (218)
T 4djt_A            6 ERRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGA   85 (218)
T ss_dssp             ----CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTC
T ss_pred             ccccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcC
Confidence            445568999999999999999999999888877777787776666665554 4458899999999999999999999999


Q ss_pred             cEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHH
Q 030364           84 AAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNEL  163 (178)
Q Consensus        84 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~  163 (178)
                      |++++|||++++.+++.+..|+..+......+.|+++|+||+|+.+...+..+....++...+++++++||++|.|++++
T Consensus        86 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l  165 (218)
T 4djt_A           86 SGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLP  165 (218)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEBTTTTBTTTHH
T ss_pred             CEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEecCCCCCHHHH
Confidence            99999999999999999999999988876677999999999999887788888888898889999999999999999999


Q ss_pred             HHHHHhhccccc
Q 030364          164 FYEIGDCTECFS  175 (178)
Q Consensus       164 ~~~l~~~i~~~~  175 (178)
                      |++|.+.+....
T Consensus       166 ~~~l~~~~~~~~  177 (218)
T 4djt_A          166 FLHLARIFTGRP  177 (218)
T ss_dssp             HHHHHHHHHCCT
T ss_pred             HHHHHHHHhccc
Confidence            999999887543

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=100.00  E-value=2.4e-34  Score=194.02  Aligned_cols=165  Identities=28%  Similarity=0.504  Sum_probs=143.7

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEE
Q 030364            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (178)
Q Consensus         8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i   87 (178)
                      .+.+||+++|.+|+|||||+++|.++.+...+.++.+... ......++..+.+.+||+||++.+...+..+++.+|+++
T Consensus         3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   81 (186)
T 1mh1_A            3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSL   81 (186)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee-EEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEE
Confidence            4579999999999999999999999988877777776554 455677888999999999999999999999999999999


Q ss_pred             EEEECCCHhHHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCccc------------cccCHHHHHHHHHHcCC-eEEEEe
Q 030364           88 VVYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEEK------------RKVKNEEGELYAQENGL-SFLETS  153 (178)
Q Consensus        88 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~S  153 (178)
                      +|||++++.+++.+. .|+..+.... ++.|+++|+||+|+...            +.+..++...+++..++ +++++|
T Consensus        82 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  160 (186)
T 1mh1_A           82 ICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS  160 (186)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHS-TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred             EEEECCChhhHHHHHHHHHHHHHHhC-CCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEec
Confidence            999999999999987 6878777663 48999999999998653            45667788888988887 999999


Q ss_pred             CCCCCCHHHHHHHHHhhcccc
Q 030364          154 AKSAHNVNELFYEIGDCTECF  174 (178)
Q Consensus       154 a~~~~~i~~~~~~l~~~i~~~  174 (178)
                      |++|.|++++|++|.+.+...
T Consensus       161 a~~g~gi~~l~~~l~~~~~~~  181 (186)
T 1mh1_A          161 ALTQRGLKTVFDEAIRAVLCP  181 (186)
T ss_dssp             TTTCTTHHHHHHHHHHHHSCC
T ss_pred             CCCccCHHHHHHHHHHHHhcc
Confidence            999999999999999988654

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=100.00  E-value=8.6e-35  Score=199.42  Aligned_cols=167  Identities=26%  Similarity=0.475  Sum_probs=138.8

Q ss_pred             ccCCCCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcC
Q 030364            3 RTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG   82 (178)
Q Consensus         3 ~~~~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~   82 (178)
                      +.....+.+||+++|.+|+|||||++++.++.+...+.++.+.. .......++..+.+.+||+||++.+...+..+++.
T Consensus        23 ~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~  101 (204)
T 4gzl_A           23 NLYFQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDN-YSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQ  101 (204)
T ss_dssp             -------CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEE-EEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTT
T ss_pred             hHhhcCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecce-eEEEEEECCEEEEEEEEECCCchhhHHHHHHHhcc
Confidence            34445678999999999999999999999998887777777543 45566778888999999999999999999999999


Q ss_pred             CcEEEEEEECCCHhHHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCccccc------------cCHHHHHHHHHHcCC-e
Q 030364           83 AAAAVVVYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEEKRK------------VKNEEGELYAQENGL-S  148 (178)
Q Consensus        83 ~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~------------~~~~~~~~~~~~~~~-~  148 (178)
                      +|++++|||++++.+++.+. .|+..+.... ++.|+++|+||+|+.....            +..++...+++..++ +
T Consensus       102 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  180 (204)
T 4gzl_A          102 TDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVK  180 (204)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSE
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcE
Confidence            99999999999999999987 7877777764 7899999999999876433            667788888888886 6


Q ss_pred             EEEEeCCCCCCHHHHHHHHHhhc
Q 030364          149 FLETSAKSAHNVNELFYEIGDCT  171 (178)
Q Consensus       149 ~~~~Sa~~~~~i~~~~~~l~~~i  171 (178)
                      ++++||++|.|++++|++|.+.+
T Consensus       181 ~~~~SA~~g~gi~~l~~~l~~~~  203 (204)
T 4gzl_A          181 YLECSALTQRGLKTVFDEAIRAV  203 (204)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHTT
T ss_pred             EEEeeCCCCCCHHHHHHHHHHHh
Confidence            99999999999999999998865

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=100.00  E-value=1.1e-35  Score=204.07  Aligned_cols=166  Identities=27%  Similarity=0.478  Sum_probs=110.9

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHHhC--cCCCCccCceeeeEEEEEEEeCCe--EEEEEEEeCCCchhhhccchhhhcCC
Q 030364            8 NIQVKLVLLGDMGTGKTSLVLRFVKG--QFFDFQESTIGAAFFTQVLSLNEV--TIKFDIWDTAGQERYHSLAPMYYRGA   83 (178)
Q Consensus         8 ~~~~~i~v~G~~~~GKStl~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~   83 (178)
                      ...++|+++|.+|+|||||+++|.++  .+...+.++.+.+.....+.+++.  .+.+.+||+||++.+...+..+++.+
T Consensus        18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   97 (208)
T 2yc2_C           18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV   97 (208)
T ss_dssp             EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence            35789999999999999999999988  777777788777777777888876  88999999999999999999999999


Q ss_pred             cEEEEEEECCCHhHHHHHHHHHHHHHHhCC---CCceEEEEEeCCCCcc-ccccCHHHHHHHHHHcCCeEEEEeCCC-CC
Q 030364           84 AAAVVVYDITSMDSFERAKKWVQELQRQGN---PNLIMFLVANKVDLEE-KRKVKNEEGELYAQENGLSFLETSAKS-AH  158 (178)
Q Consensus        84 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~-~~  158 (178)
                      |++++|||++++.+++.+..|+..+.....   .+.|+++|+||+|+.. .+.+..++...+++.++++++++||++ |.
T Consensus        98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~  177 (208)
T 2yc2_C           98 YYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGK  177 (208)
T ss_dssp             CEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEEECCC-----
T ss_pred             cEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEEeccCCCCc
Confidence            999999999999999999999999988765   6899999999999987 677888889999999999999999999 99


Q ss_pred             CHHHHHHHHHhhccc
Q 030364          159 NVNELFYEIGDCTEC  173 (178)
Q Consensus       159 ~i~~~~~~l~~~i~~  173 (178)
                      |++++|++|.+.+..
T Consensus       178 gi~~l~~~i~~~~~~  192 (208)
T 2yc2_C          178 DADAPFLSIATTFYR  192 (208)
T ss_dssp             --CHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHH
Confidence            999999999987653

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=100.00  E-value=5.8e-35  Score=201.24  Aligned_cols=167  Identities=29%  Similarity=0.515  Sum_probs=143.1

Q ss_pred             CCCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcE
Q 030364            6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAA   85 (178)
Q Consensus         6 ~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~   85 (178)
                      ...+.+||+++|.+|+|||||++++.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus         5 ~~~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   83 (212)
T 2j0v_A            5 SVSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADI   83 (212)
T ss_dssp             SCCCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSE
T ss_pred             CcCceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCE
Confidence            345689999999999999999999999998877778877555 4456678888999999999999999999999999999


Q ss_pred             EEEEEECCCHhHHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCccccc--------cCHHHHHHHHHHcCC-eEEEEeCC
Q 030364           86 AVVVYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEEKRK--------VKNEEGELYAQENGL-SFLETSAK  155 (178)
Q Consensus        86 ~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~--------~~~~~~~~~~~~~~~-~~~~~Sa~  155 (178)
                      +++|||++++++++.+. .|+..+.... ++.|+++|+||+|+.+...        +..++...+++.+++ +++++||+
T Consensus        84 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~  162 (212)
T 2j0v_A           84 FVLAFSLISKASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSK  162 (212)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHC-TTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCTT
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEccCC
Confidence            99999999999999986 7888887763 5899999999999876543        367778888888886 99999999


Q ss_pred             CCCCHHHHHHHHHhhcccc
Q 030364          156 SAHNVNELFYEIGDCTECF  174 (178)
Q Consensus       156 ~~~~i~~~~~~l~~~i~~~  174 (178)
                      +|.|++++|++|++.+...
T Consensus       163 ~g~gi~~l~~~l~~~~~~~  181 (212)
T 2j0v_A          163 TQQNVKAVFDTAIKVVLQP  181 (212)
T ss_dssp             TCTTHHHHHHHHHHHHHCC
T ss_pred             CCCCHHHHHHHHHHHHhhh
Confidence            9999999999999987654

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=100.00  E-value=9.6e-35  Score=200.56  Aligned_cols=167  Identities=31%  Similarity=0.532  Sum_probs=124.0

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEE
Q 030364            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (178)
Q Consensus         8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i   87 (178)
                      .+.+||+++|.+|+|||||+++|.++.+...+.++.+..+ .....+++..+.+.+||+||++.+...+..++..+|+++
T Consensus        32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i  110 (214)
T 2j1l_A           32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLL  110 (214)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEE-EEEEEETTEEEEEEEEEC---------------CEEEEE
T ss_pred             cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEE
Confidence            4579999999999999999999999888776777665444 455677888899999999999999999999999999999


Q ss_pred             EEEECCCHhHHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCcccc------------ccCHHHHHHHHHHcCC-eEEEEe
Q 030364           88 VVYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEEKR------------KVKNEEGELYAQENGL-SFLETS  153 (178)
Q Consensus        88 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~ivv~nK~D~~~~~------------~~~~~~~~~~~~~~~~-~~~~~S  153 (178)
                      +|||++++++++.+. .|+..+... .++.|+++|+||+|+....            .+..++...+++..++ +++++|
T Consensus       111 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  189 (214)
T 2j1l_A          111 LCFDVTSPNSFDNIFNRWYPEVNHF-CKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECS  189 (214)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHH-CSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECB
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHHh-CCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEec
Confidence            999999999999986 688877765 3689999999999997543            5667788889988897 999999


Q ss_pred             CCCCCCHHHHHHHHHhhcccccc
Q 030364          154 AKSAHNVNELFYEIGDCTECFSL  176 (178)
Q Consensus       154 a~~~~~i~~~~~~l~~~i~~~~~  176 (178)
                      |++|.|++++|++|.+.+...+.
T Consensus       190 A~~g~gi~el~~~l~~~~~~~~~  212 (214)
T 2j1l_A          190 ARLHDNVHAVFQEAAEVALSSRG  212 (214)
T ss_dssp             TTTTBSHHHHHHHHHHHHHHC--
T ss_pred             CCCCCCHHHHHHHHHHHHHHhhc
Confidence            99999999999999998876543

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=100.00  E-value=2e-37  Score=211.74  Aligned_cols=167  Identities=41%  Similarity=0.691  Sum_probs=143.2

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEE
Q 030364            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (178)
Q Consensus         8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i   87 (178)
                      ++.+||+++|.+|+|||||+++|.++.+...+.++.+.+.....+.+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus        31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i  110 (199)
T 3l0i_B           31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII  110 (199)
T ss_dssp             SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEE
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEE
Confidence            56899999999999999999999998888778888888888888899999999999999999999999999999999999


Q ss_pred             EEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Q 030364           88 VVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI  167 (178)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  167 (178)
                      +|||++++.+++.+..|+..+......+.|+++|+||+|+...+.+..++...+++.++++++++||++|.|++++|++|
T Consensus       111 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~l~~~l  190 (199)
T 3l0i_B          111 VVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTM  190 (199)
T ss_dssp             ECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC---HHHHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence            99999999999999999999987766789999999999998777777777888899999999999999999999999999


Q ss_pred             Hhhcccc
Q 030364          168 GDCTECF  174 (178)
Q Consensus       168 ~~~i~~~  174 (178)
                      .+.+.+.
T Consensus       191 ~~~l~~~  197 (199)
T 3l0i_B          191 AAEIKKR  197 (199)
T ss_dssp             TTTTTTT
T ss_pred             HHHHHHh
Confidence            9987653

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=100.00  E-value=3.9e-34  Score=195.69  Aligned_cols=164  Identities=34%  Similarity=0.545  Sum_probs=142.8

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEE
Q 030364            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (178)
Q Consensus         8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i   87 (178)
                      ...+||+++|.+|+|||||++++.++.+...+.++.+.++.. .+..++..+.+.+||+||++.+...+..+++.+|+++
T Consensus        23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i  101 (201)
T 2gco_A           23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIA-DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL  101 (201)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEE-EEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEE-EEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEE
Confidence            468899999999999999999999999887777877766543 3677888899999999999999999999999999999


Q ss_pred             EEEECCCHhHHHHH-HHHHHHHHHhCCCCceEEEEEeCCCCccc------------cccCHHHHHHHHHHcCC-eEEEEe
Q 030364           88 VVYDITSMDSFERA-KKWVQELQRQGNPNLIMFLVANKVDLEEK------------RKVKNEEGELYAQENGL-SFLETS  153 (178)
Q Consensus        88 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~S  153 (178)
                      +|||++++++++.+ ..|+..+... .++.|+++|+||+|+...            +.+..++...+++..++ +++++|
T Consensus       102 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  180 (201)
T 2gco_A          102 MCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECS  180 (201)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHH-STTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHh-CCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEee
Confidence            99999999999998 5777777665 358999999999998754            34667788888888887 999999


Q ss_pred             CCCCCCHHHHHHHHHhhccc
Q 030364          154 AKSAHNVNELFYEIGDCTEC  173 (178)
Q Consensus       154 a~~~~~i~~~~~~l~~~i~~  173 (178)
                      |++|.|++++|++|.+.+.+
T Consensus       181 A~~g~gi~~l~~~i~~~~l~  200 (201)
T 2gco_A          181 AKTKEGVREVFEMATRAGLQ  200 (201)
T ss_dssp             TTTCTTHHHHHHHHHHHHHC
T ss_pred             CCCCCCHHHHHHHHHHHHhc
Confidence            99999999999999987643

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=100.00  E-value=1.7e-34  Score=198.06  Aligned_cols=164  Identities=29%  Similarity=0.519  Sum_probs=141.7

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEE
Q 030364            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA   86 (178)
Q Consensus         7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~   86 (178)
                      .+..+||+++|.+|+|||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus        25 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~  103 (205)
T 1gwn_A           25 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV  103 (205)
T ss_dssp             --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred             cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEE
Confidence            34689999999999999999999999998877778877665 34566788889999999999999999999999999999


Q ss_pred             EEEEECCCHhHHHHH-HHHHHHHHHhCCCCceEEEEEeCCCCccc------------cccCHHHHHHHHHHcC-CeEEEE
Q 030364           87 VVVYDITSMDSFERA-KKWVQELQRQGNPNLIMFLVANKVDLEEK------------RKVKNEEGELYAQENG-LSFLET  152 (178)
Q Consensus        87 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~  152 (178)
                      ++|||++++++++.+ ..|+..+... .++.|+++|+||+|+...            +.+..++...+++.++ +++++|
T Consensus       104 ilv~D~~~~~s~~~~~~~~~~~i~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~  182 (205)
T 1gwn_A          104 LICFDISRPETLDSVLKKWKGEIQEF-CPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC  182 (205)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHH-CTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHH-CCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEEEEe
Confidence            999999999999998 6888888765 368999999999999642            4567788888998887 799999


Q ss_pred             eCC-CCCCHHHHHHHHHhhcc
Q 030364          153 SAK-SAHNVNELFYEIGDCTE  172 (178)
Q Consensus       153 Sa~-~~~~i~~~~~~l~~~i~  172 (178)
                      ||+ +|.|++++|++|++.+.
T Consensus       183 SAk~~~~gv~~lf~~l~~~~l  203 (205)
T 1gwn_A          183 SALQSENSVRDIFHVATLACV  203 (205)
T ss_dssp             CTTTCHHHHHHHHHHHHHHHH
T ss_pred             eeccCCcCHHHHHHHHHHHHh
Confidence            999 68999999999988753

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=100.00  E-value=6e-34  Score=192.98  Aligned_cols=167  Identities=29%  Similarity=0.516  Sum_probs=134.9

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEE
Q 030364            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (178)
Q Consensus         8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i   87 (178)
                      .+.++|+++|.+|+|||||+++|.++.+...+.++.+... ...+..++..+.+.+||+||++.+...+..+++.+|+++
T Consensus        19 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   97 (190)
T 3con_A           19 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL   97 (190)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC-----------CTTCSEEE
T ss_pred             cceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEE-EEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEE
Confidence            4578999999999999999999999888776666665444 456677888899999999999999999999999999999


Q ss_pred             EEEECCCHhHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Q 030364           88 VVYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYE  166 (178)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  166 (178)
                      +|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.. +....++...+++..+++++++||++|.|+++++++
T Consensus        98 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  176 (190)
T 3con_A           98 CVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT-RTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYT  176 (190)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCc-ccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence            9999999999999999988887654 35799999999999876 556678888899999999999999999999999999


Q ss_pred             HHhhcccccc
Q 030364          167 IGDCTECFSL  176 (178)
Q Consensus       167 l~~~i~~~~~  176 (178)
                      |.+.+.+.+.
T Consensus       177 l~~~~~~~~~  186 (190)
T 3con_A          177 LVREIRQYRM  186 (190)
T ss_dssp             HHHHHHHHC-
T ss_pred             HHHHHHHHHH
Confidence            9998876543

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=2.6e-34  Score=195.99  Aligned_cols=169  Identities=32%  Similarity=0.430  Sum_probs=143.9

Q ss_pred             cCCCCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCC
Q 030364            4 TSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGA   83 (178)
Q Consensus         4 ~~~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~   83 (178)
                      ++.....++|+++|.+|+|||||+++|.++.+...+.++.+..+ ......++..+.+.+||+||++.+...+..++..+
T Consensus         2 m~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   80 (199)
T 2gf0_A            2 MPEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTY-RQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKG   80 (199)
T ss_dssp             ---CCCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEE-EEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHC
T ss_pred             CccCCCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccce-eEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccC
Confidence            34455689999999999999999999999988777777766544 34556788889999999999999999999999999


Q ss_pred             cEEEEEEECCCHhHHHHHHHHHHHHHHhC--CCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHH
Q 030364           84 AAAVVVYDITSMDSFERAKKWVQELQRQG--NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVN  161 (178)
Q Consensus        84 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  161 (178)
                      |++++|||++++++++.+..|+..+....  .++.|+++|+||+|+.. +.+..++...++..++++++++||++|.|++
T Consensus        81 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  159 (199)
T 2gf0_A           81 HAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ-REVDTREAQAVAQEWKCAFMETSAKMNYNVK  159 (199)
T ss_dssp             SEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSS-CSSCHHHHHHHHHHHTCEEEECBTTTTBSHH
T ss_pred             CEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCc-cccCHHHHHHHHHHhCCeEEEEecCCCCCHH
Confidence            99999999999999999888887776643  25789999999999875 5566777888888899999999999999999


Q ss_pred             HHHHHHHhhcccc
Q 030364          162 ELFYEIGDCTECF  174 (178)
Q Consensus       162 ~~~~~l~~~i~~~  174 (178)
                      ++|++|.+.+...
T Consensus       160 ~l~~~l~~~~~~~  172 (199)
T 2gf0_A          160 ELFQELLTLETRR  172 (199)
T ss_dssp             HHHHHHHHHCSSS
T ss_pred             HHHHHHHHHHhhh
Confidence            9999999987654

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=7.3e-34  Score=195.15  Aligned_cols=166  Identities=32%  Similarity=0.529  Sum_probs=138.1

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEE
Q 030364            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (178)
Q Consensus         8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i   87 (178)
                      ...+||+++|.+|+|||||+++|.++.+...+.++.+..+.. .+..++..+.+.+||+||++.+...+..+++.+|+++
T Consensus        23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i  101 (207)
T 2fv8_A           23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL  101 (207)
T ss_dssp             SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEE-EEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEE
T ss_pred             ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEE-EEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEE
Confidence            457899999999999999999999998887777777766543 3677888899999999999999999999999999999


Q ss_pred             EEEECCCHhHHHHH-HHHHHHHHHhCCCCceEEEEEeCCCCccc------------cccCHHHHHHHHHHcCC-eEEEEe
Q 030364           88 VVYDITSMDSFERA-KKWVQELQRQGNPNLIMFLVANKVDLEEK------------RKVKNEEGELYAQENGL-SFLETS  153 (178)
Q Consensus        88 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~S  153 (178)
                      +|||++++++++.+ ..|+..+... .++.|+++|+||+|+...            +.+..++...++...++ +++++|
T Consensus       102 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  180 (207)
T 2fv8_A          102 MCFSVDSPDSLENIPEKWVPEVKHF-CPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECS  180 (207)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHH-STTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHh-CCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEee
Confidence            99999999999998 6777777665 368999999999999754            34667778888888887 999999


Q ss_pred             CCCCCCHHHHHHHHHhhccccc
Q 030364          154 AKSAHNVNELFYEIGDCTECFS  175 (178)
Q Consensus       154 a~~~~~i~~~~~~l~~~i~~~~  175 (178)
                      |++|.|++++|++|.+.+.+.+
T Consensus       181 A~~g~gi~el~~~l~~~i~~~~  202 (207)
T 2fv8_A          181 AKTKEGVREVFETATRAALQKR  202 (207)
T ss_dssp             TTTCTTHHHHHHHHHHHHHSCC
T ss_pred             CCCCCCHHHHHHHHHHHHHHHh
Confidence            9999999999999999876543

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=100.00  E-value=4.3e-35  Score=197.15  Aligned_cols=165  Identities=30%  Similarity=0.521  Sum_probs=126.6

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEE
Q 030364            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA   86 (178)
Q Consensus         7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~   86 (178)
                      ..+.+||+++|.+|+|||||++++.++.+...+.++.+..+. .....++..+.+.+||+||++.+...+..+++.+|++
T Consensus         5 ~~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~   83 (182)
T 3bwd_D            5 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVF   83 (182)
T ss_dssp             --CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CB-CCCC-------CEEECCCC-CTTTTTGGGGGTTCSEE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEE-EEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEE
Confidence            355899999999999999999999999887766666654432 2244566678889999999999999999999999999


Q ss_pred             EEEEECCCHhHHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCccccc----------cCHHHHHHHHHHcCC-eEEEEeC
Q 030364           87 VVVYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEEKRK----------VKNEEGELYAQENGL-SFLETSA  154 (178)
Q Consensus        87 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa  154 (178)
                      ++|||++++++++.+. .|+..+.... ++.|+++|+||+|+.+...          +..++...+++.+++ +++++||
T Consensus        84 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa  162 (182)
T 3bwd_D           84 ILAFSLISKASYENVSKKWIPELKHYA-PGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSS  162 (182)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHC-TTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCT
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEEC
Confidence            9999999999999987 6888887763 5899999999999866544          366778888888886 9999999


Q ss_pred             CCCCCHHHHHHHHHhhccc
Q 030364          155 KSAHNVNELFYEIGDCTEC  173 (178)
Q Consensus       155 ~~~~~i~~~~~~l~~~i~~  173 (178)
                      ++|.|++++|++|.+.+.+
T Consensus       163 ~~~~gi~~l~~~l~~~i~~  181 (182)
T 3bwd_D          163 KSQENVKGVFDAAIRVVLQ  181 (182)
T ss_dssp             TTCTTHHHHHHHHHHHHSC
T ss_pred             CCCCCHHHHHHHHHHHHhc
Confidence            9999999999999987653

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=100.00  E-value=1.5e-33  Score=186.55  Aligned_cols=161  Identities=30%  Similarity=0.541  Sum_probs=141.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEE
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVV   89 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v   89 (178)
                      .+||+++|.+|+|||||++++.++.+...+.++.+... ......++..+.+.+||+||++.+...+..++..+|++++|
T Consensus         3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   81 (166)
T 2ce2_X            3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV   81 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEE-EEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence            68999999999999999999999988776666665443 55567788889999999999999888889999999999999


Q ss_pred             EECCCHhHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Q 030364           90 YDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIG  168 (178)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  168 (178)
                      ||++++.+++.+..|+..+.... ..+.|+++|+||+|+.. .....++...+++.++++++++||++|.|+++++++|.
T Consensus        82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  160 (166)
T 2ce2_X           82 FAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV  160 (166)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHHHH
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhh-cccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Confidence            99999999999999988887754 35799999999999876 45667788888988999999999999999999999999


Q ss_pred             hhcc
Q 030364          169 DCTE  172 (178)
Q Consensus       169 ~~i~  172 (178)
                      +.+.
T Consensus       161 ~~~~  164 (166)
T 2ce2_X          161 REIR  164 (166)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8774

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=100.00  E-value=2.2e-33  Score=190.68  Aligned_cols=165  Identities=28%  Similarity=0.350  Sum_probs=135.7

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHHhCc--CCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchh-hhccchhhhcCCc
Q 030364            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQ--FFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER-YHSLAPMYYRGAA   84 (178)
Q Consensus         8 ~~~~~i~v~G~~~~GKStl~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~-~~~~~~~~~~~~d   84 (178)
                      .+.+||+++|.+|||||||+++|.+..  +... .++.+.+.....+.+++..+.+.+||++|... +..+...+++.+|
T Consensus         4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~   82 (192)
T 2cjw_A            4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSD-XEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD   82 (192)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHHSCCC-----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCS
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCcCCcCcc-ccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCC
Confidence            457999999999999999999999643  3332 33455566667778899999999999999866 4556777889999


Q ss_pred             EEEEEEECCCHhHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHH
Q 030364           85 AAVVVYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNEL  163 (178)
Q Consensus        85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~  163 (178)
                      ++++|||++++++|+.+..|+..+.... .++.|+++|+||+|+...+.+..++...++..+++++++|||++|.|++++
T Consensus        83 ~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~l  162 (192)
T 2cjw_A           83 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKEL  162 (192)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEeccccCCCHHHH
Confidence            9999999999999999999988777643 457999999999999877777777888888889999999999999999999


Q ss_pred             HHHHHhhccc
Q 030364          164 FYEIGDCTEC  173 (178)
Q Consensus       164 ~~~l~~~i~~  173 (178)
                      |++|++.+..
T Consensus       163 f~~l~~~~~~  172 (192)
T 2cjw_A          163 FEGIVRQVRL  172 (192)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999988743

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=100.00  E-value=9.8e-35  Score=201.36  Aligned_cols=166  Identities=33%  Similarity=0.557  Sum_probs=146.7

Q ss_pred             CCCCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCc
Q 030364            5 SNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAA   84 (178)
Q Consensus         5 ~~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d   84 (178)
                      ..+.+.+||+++|.+|+|||||+++++.+.+...+.++.+.+........++..+.+.+||+||++.+...+..+++.+|
T Consensus        10 ~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~   89 (221)
T 3gj0_A           10 GEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQ   89 (221)
T ss_dssp             TCCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCC
T ss_pred             CCcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCC
Confidence            34456899999999999999999998878877778888888888888889999999999999999999999999999999


Q ss_pred             EEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Q 030364           85 AAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELF  164 (178)
Q Consensus        85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  164 (178)
                      ++++|||++++.+++.+..|+..+.... ++.|+++|+||+|+.+....  .+...+++..+++++++||++|.|++++|
T Consensus        90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  166 (221)
T 3gj0_A           90 CAIIMFDVTSRVTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRKVK--AKSIVFHRKKNLQYYDISAKSNYNFEKPF  166 (221)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHS-TTCCEEEEEECTTSSSCSSC--GGGCCHHHHHTCEEEECBGGGTBTTTHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECCcccccccc--HHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence            9999999999999999999999988763 58899999999999764432  24556777889999999999999999999


Q ss_pred             HHHHhhccc
Q 030364          165 YEIGDCTEC  173 (178)
Q Consensus       165 ~~l~~~i~~  173 (178)
                      ++|.+.+..
T Consensus       167 ~~l~~~l~~  175 (221)
T 3gj0_A          167 LWLARKLIG  175 (221)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHh
Confidence            999998754

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=100.00  E-value=1.7e-34  Score=196.50  Aligned_cols=166  Identities=20%  Similarity=0.260  Sum_probs=134.5

Q ss_pred             CCCCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCc-----------cCceeeeEEEEEE-EeCCeEEEEEEEeCCCchhh
Q 030364            5 SNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQ-----------ESTIGAAFFTQVL-SLNEVTIKFDIWDTAGQERY   72 (178)
Q Consensus         5 ~~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~-----------~~~~~~~~~~~~~-~~~~~~~~~~i~d~~g~~~~   72 (178)
                      ....+.+||+++|.+|+|||||++.+.+ .+...+           .++.+.++..... ..++..+.+.+||+||++.+
T Consensus         9 ~~~~~~~ki~vvG~~~~GKssL~~~l~~-~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~   87 (198)
T 3t1o_A            9 ANREINFKIVYYGPGLSGKTTNLKWIYS-KVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFY   87 (198)
T ss_dssp             TTTEEEEEEEEECSTTSSHHHHHHHHHH-TSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSC
T ss_pred             hccccccEEEEECCCCCCHHHHHHHHHh-hccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHH
Confidence            3456789999999999999999976664 444333           2344444433334 56677899999999999999


Q ss_pred             hccchhhhcCCcEEEEEEECC------CHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcC
Q 030364           73 HSLAPMYYRGAAAAVVVYDIT------SMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENG  146 (178)
Q Consensus        73 ~~~~~~~~~~~d~~i~v~d~~------~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~  146 (178)
                      ...+..+++.+|++|+|||++      +.+++..+..|+..+. ....+.|+++|+||+|+.+.  +..++...+++.++
T Consensus        88 ~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~-~~~~~~piilv~NK~Dl~~~--~~~~~~~~~~~~~~  164 (198)
T 3t1o_A           88 NASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYG-LTLDDVPIVIQVNKRDLPDA--LPVEMVRAVVDPEG  164 (198)
T ss_dssp             SHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTT-CCTTSSCEEEEEECTTSTTC--CCHHHHHHHHCTTC
T ss_pred             HHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhc-cccCCCCEEEEEEchhcccc--cCHHHHHHHHHhcC
Confidence            999999999999999999999      5567777777777763 33578999999999999763  66788888999899


Q ss_pred             C-eEEEEeCCCCCCHHHHHHHHHhhcccc
Q 030364          147 L-SFLETSAKSAHNVNELFYEIGDCTECF  174 (178)
Q Consensus       147 ~-~~~~~Sa~~~~~i~~~~~~l~~~i~~~  174 (178)
                      + +++++||++|.|++++|++|.+.+...
T Consensus       165 ~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~  193 (198)
T 3t1o_A          165 KFPVLEAVATEGKGVFETLKEVSRLVLAR  193 (198)
T ss_dssp             CSCEEECBGGGTBTHHHHHHHHHHHHHHH
T ss_pred             CceEEEEecCCCcCHHHHHHHHHHHHHHH
Confidence            9 999999999999999999999987654

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=100.00  E-value=4.6e-34  Score=194.72  Aligned_cols=167  Identities=16%  Similarity=0.249  Sum_probs=128.8

Q ss_pred             CCCCceeEEEEEcCCCCCHHHHHHHHHhCcCCC-CccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCC
Q 030364            5 SNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFD-FQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGA   83 (178)
Q Consensus         5 ~~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~   83 (178)
                      +...+..||+|+|.+|+|||||+++|.++.+.. .+.++.+....  .+.  ...+.+.+||+||++.+...+..+++.+
T Consensus        12 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~--~~~--~~~~~~~i~Dt~G~~~~~~~~~~~~~~~   87 (199)
T 4bas_A           12 GQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVE--TFE--KGRVAFTVFDMGGAKKFRGLWETYYDNI   87 (199)
T ss_dssp             ----CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEE--EEE--ETTEEEEEEEECCSGGGGGGGGGGCTTC
T ss_pred             cCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEE--EEE--eCCEEEEEEECCCCHhHHHHHHHHHhcC
Confidence            344568999999999999999999999998877 67777774433  233  3347888999999999999999999999


Q ss_pred             cEEEEEEECCCHhHHHHHHHHHHHHHHhCC--------CCceEEEEEeCCCCccccccCH---HHHH-HHHHHcCCeEEE
Q 030364           84 AAAVVVYDITSMDSFERAKKWVQELQRQGN--------PNLIMFLVANKVDLEEKRKVKN---EEGE-LYAQENGLSFLE  151 (178)
Q Consensus        84 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--------~~~~~ivv~nK~D~~~~~~~~~---~~~~-~~~~~~~~~~~~  151 (178)
                      |++|+|||++++++++.+..|+..+.....        .+.|+++|+||+|+........   .... .+++..++++++
T Consensus        88 d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (199)
T 4bas_A           88 DAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPFVIFA  167 (199)
T ss_dssp             SEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCEEEEE
T ss_pred             CEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCeeEEEE
Confidence            999999999999999999888888765311        3789999999999976532111   1111 112446789999


Q ss_pred             EeCCCCCCHHHHHHHHHhhccccc
Q 030364          152 TSAKSAHNVNELFYEIGDCTECFS  175 (178)
Q Consensus       152 ~Sa~~~~~i~~~~~~l~~~i~~~~  175 (178)
                      +||++|.|++++|++|.+.+....
T Consensus       168 ~Sa~~g~gv~~l~~~l~~~~~~~~  191 (199)
T 4bas_A          168 SNGLKGTGVHEGFSWLQETASRQS  191 (199)
T ss_dssp             CBTTTTBTHHHHHHHHHHHHHHHC
T ss_pred             eeCCCccCHHHHHHHHHHHHHHHh
Confidence            999999999999999999876543

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=100.00  E-value=8.5e-32  Score=183.80  Aligned_cols=166  Identities=42%  Similarity=0.697  Sum_probs=147.0

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEE
Q 030364            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (178)
Q Consensus         8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i   87 (178)
                      +..++|+++|++|||||||++++.+..+...+.++.+.+.....+.+++..+.+.+||++|++.+...+..++..+++++
T Consensus         3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i   82 (199)
T 2f9l_A            3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL   82 (199)
T ss_dssp             SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred             cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEE
Confidence            45799999999999999999999999887777888887887888889999999999999999999999999999999999


Q ss_pred             EEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Q 030364           88 VVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI  167 (178)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  167 (178)
                      +|+|+++..+++.+..|+..+......+.|+++++||+|+.+.+.+...++..++...++.++++||+++.|+++++++|
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~~l  162 (199)
T 2f9l_A           83 LVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNI  162 (199)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence            99999999999998888888776655678999999999998777777788888999999999999999999999999999


Q ss_pred             Hhhccc
Q 030364          168 GDCTEC  173 (178)
Q Consensus       168 ~~~i~~  173 (178)
                      .+.+..
T Consensus       163 ~~~~~~  168 (199)
T 2f9l_A          163 LTEIYR  168 (199)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            987643

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=100.00  E-value=8.5e-34  Score=192.08  Aligned_cols=162  Identities=22%  Similarity=0.314  Sum_probs=129.6

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEE
Q 030364            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (178)
Q Consensus         8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i   87 (178)
                      .+.+||+|+|.+|+|||||+++|.++.+...+.++.+.++..  +...  .+.+.+||+||++.+...+..+++.+|+++
T Consensus        20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   95 (188)
T 1zd9_A           20 KEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK--ITKG--NVTIKLWDIGGQPRFRSMWERYCRGVSAIV   95 (188)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE--EEET--TEEEEEEEECCSHHHHTTHHHHHTTCSEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEE--EEeC--CEEEEEEECCCCHhHHHHHHHHHccCCEEE
Confidence            458999999999999999999999998887777777766543  3333  467889999999999999999999999999


Q ss_pred             EEEECCCHhHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCccccccCHHHHHHH-----HHHcCCeEEEEeCCCCCCHH
Q 030364           88 VVYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELY-----AQENGLSFLETSAKSAHNVN  161 (178)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~i~  161 (178)
                      +|||++++++++.+..|+..+.... ..+.|+++|+||+|+....  ...+....     ....+++++++||++|.|++
T Consensus        96 ~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~  173 (188)
T 1zd9_A           96 YMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGAL--DEKELIEKMNLSAIQDREICCYSISCKEKDNID  173 (188)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCC--CHHHHHHHhChhhhccCCeeEEEEECCCCCCHH
Confidence            9999999999999988888876542 3689999999999996532  12221111     11234689999999999999


Q ss_pred             HHHHHHHhhccccc
Q 030364          162 ELFYEIGDCTECFS  175 (178)
Q Consensus       162 ~~~~~l~~~i~~~~  175 (178)
                      ++|++|.+.+...+
T Consensus       174 ~l~~~l~~~~~~~~  187 (188)
T 1zd9_A          174 ITLQWLIQHSKSRR  187 (188)
T ss_dssp             HHHHHHHHTCC---
T ss_pred             HHHHHHHHHHHhhc
Confidence            99999999887643

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=100.00  E-value=5.5e-33  Score=189.61  Aligned_cols=157  Identities=18%  Similarity=0.222  Sum_probs=122.9

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEE
Q 030364            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (178)
Q Consensus         8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i   87 (178)
                      .+.++|+++|++|||||||++++.++.+. .+.++.+.+  ...+.+++  +.+.+||+||++.+...+..+++.+|+++
T Consensus        23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i   97 (198)
T 1f6b_A           23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPT--SEELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIV   97 (198)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCS--CEEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEE
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCce--eEEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEE
Confidence            45789999999999999999999987764 355555544  34455666  78889999999999999999999999999


Q ss_pred             EEEECCCHhHHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCccccccCHHHHHHHHHH-----------------cCCeE
Q 030364           88 VVYDITSMDSFERAKKWVQELQRQ-GNPNLIMFLVANKVDLEEKRKVKNEEGELYAQE-----------------NGLSF  149 (178)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~-----------------~~~~~  149 (178)
                      +|+|++++++++.+..|+..+... ...+.|+++|+||+|+.+  .+..++...+...                 .++++
T Consensus        98 ~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (198)
T 1f6b_A           98 FLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE--AISEERLREMFGLYGQTTGKGSVSLKELNARPLEV  175 (198)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT--CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEE
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc--cCCHHHHHHHhCcccccccccccccccccCceEEE
Confidence            999999999999999998888764 246899999999999975  4555666665542                 34689


Q ss_pred             EEEeCCCCCCHHHHHHHHHhhc
Q 030364          150 LETSAKSAHNVNELFYEIGDCT  171 (178)
Q Consensus       150 ~~~Sa~~~~~i~~~~~~l~~~i  171 (178)
                      ++|||++|.|++++|++|.+.+
T Consensus       176 ~~~SA~~g~gv~~l~~~l~~~l  197 (198)
T 1f6b_A          176 FMCSVLKRQGYGEGFRWMAQYI  197 (198)
T ss_dssp             EECBTTTTBSHHHHHHHHHTTC
T ss_pred             EEEECCCCCCHHHHHHHHHHhc
Confidence            9999999999999999999876

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.7e-32  Score=185.86  Aligned_cols=162  Identities=21%  Similarity=0.291  Sum_probs=129.0

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHHhCc-CCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEE
Q 030364            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQ-FFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA   86 (178)
Q Consensus         8 ~~~~~i~v~G~~~~GKStl~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~   86 (178)
                      .+.+||+++|.+|+|||||+++|.++. +...+.++.+  .....+.+++  +.+.+||+||++.+...+..+++.+|++
T Consensus        19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   94 (190)
T 2h57_A           19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKEGQAI   94 (190)
T ss_dssp             --CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSS--EEEEEEECSS--CEEEEEEECCSTTTGGGGGGGGGGCSEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccc--eeEEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEE
Confidence            458999999999999999999999887 4555666665  3344455554  6788999999999999999999999999


Q ss_pred             EEEEECCCHhHHHHHHHHHHHHHHhCC---CCceEEEEEeCCCCccccccCHHHHHHHHH-----HcCCeEEEEeCCCCC
Q 030364           87 VVVYDITSMDSFERAKKWVQELQRQGN---PNLIMFLVANKVDLEEKRKVKNEEGELYAQ-----ENGLSFLETSAKSAH  158 (178)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~  158 (178)
                      ++|+|++++++++.+..|+..+.....   .+.|+++|+||+|+.+.  ...++......     ..+++++++||++|.
T Consensus        95 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  172 (190)
T 2h57_A           95 IFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDA--VTSVKVSQLLCLENIKDKPWHICASDAIKGE  172 (190)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTC--CCHHHHHHHHTGGGCCSSCEEEEECBTTTTB
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccC--CCHHHHHHHhChhhccCCceEEEEccCCCCc
Confidence            999999999999999999888876533   58999999999999653  23344444442     235799999999999


Q ss_pred             CHHHHHHHHHhhccccc
Q 030364          159 NVNELFYEIGDCTECFS  175 (178)
Q Consensus       159 ~i~~~~~~l~~~i~~~~  175 (178)
                      |++++|++|.+.+.+.+
T Consensus       173 gi~~l~~~l~~~i~~~k  189 (190)
T 2h57_A          173 GLQEGVDWLQDQIQTVK  189 (190)
T ss_dssp             THHHHHHHHHHHC----
T ss_pred             CHHHHHHHHHHHHHHhc
Confidence            99999999999987654

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=100.00  E-value=2.3e-32  Score=185.38  Aligned_cols=157  Identities=20%  Similarity=0.244  Sum_probs=127.4

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEE
Q 030364            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (178)
Q Consensus         8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i   87 (178)
                      .+.++|+++|++|+|||||++++.++.+.. +.++.+..  ...+.+++  +.+.+||+||++.+...+..+++.+|+++
T Consensus        21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   95 (190)
T 1m2o_B           21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLAT-LQPTWHPT--SEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIV   95 (190)
T ss_dssp             ---CEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCCSCE--EEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCCc-cccCCCCC--eEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEE
Confidence            457899999999999999999999988653 55555543  44556666  78889999999999999999999999999


Q ss_pred             EEEECCCHhHHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCccccccCHHHHHHHHHH------------cCCeEEEEeC
Q 030364           88 VVYDITSMDSFERAKKWVQELQRQ-GNPNLIMFLVANKVDLEEKRKVKNEEGELYAQE------------NGLSFLETSA  154 (178)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~------------~~~~~~~~Sa  154 (178)
                      +|||++++++++.+..|+..+... ...+.|+++|+||+|+.+  .+..++.......            .++++++|||
T Consensus        96 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  173 (190)
T 1m2o_B           96 FLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN--AVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSV  173 (190)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT--CCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBT
T ss_pred             EEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC--CCCHHHHHHHhCCccccccccccccceEEEEEeEC
Confidence            999999999999999998887654 236899999999999976  3445555544332            3568999999


Q ss_pred             CCCCCHHHHHHHHHhhc
Q 030364          155 KSAHNVNELFYEIGDCT  171 (178)
Q Consensus       155 ~~~~~i~~~~~~l~~~i  171 (178)
                      ++|.|++++|++|.+.+
T Consensus       174 ~~g~gi~~l~~~l~~~l  190 (190)
T 1m2o_B          174 VMRNGYLEAFQWLSQYI  190 (190)
T ss_dssp             TTTBSHHHHHHHHHTTC
T ss_pred             CcCCCHHHHHHHHHhhC
Confidence            99999999999998764

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=100.00  E-value=4.1e-33  Score=185.66  Aligned_cols=159  Identities=21%  Similarity=0.349  Sum_probs=126.9

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEE
Q 030364            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (178)
Q Consensus         8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i   87 (178)
                      .+.++|+++|.+|+|||||++++.++.+.. +.++.+..  ...+.++  .+.+.+||+||++.+...+..+++.+|+++
T Consensus         5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii   79 (171)
T 1upt_A            5 TREMRILILGLDGAGKTTILYRLQVGEVVT-TIPTIGFN--VETVTYK--NLKFQVWDLGGLTSIRPYWRCYYSNTDAVI   79 (171)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSSEE--EEEEEET--TEEEEEEEECCCGGGGGGGGGGCTTCSEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCccc--eEEEEEC--CEEEEEEECCCChhhhHHHHHHhccCCEEE
Confidence            357999999999999999999999888754 55555533  3444555  367889999999999999999999999999


Q ss_pred             EEEECCCHhHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCccccccCHHHHH-H----HHHHcCCeEEEEeCCCCCCHH
Q 030364           88 VVYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGE-L----YAQENGLSFLETSAKSAHNVN  161 (178)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~-~----~~~~~~~~~~~~Sa~~~~~i~  161 (178)
                      +|+|++++++++.+..|+..+.... ..+.|+++|+||+|+.+....  .+.. .    .+...+++++++||++|.|++
T Consensus        80 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  157 (171)
T 1upt_A           80 YVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTS--SEMANSLGLPALKDRKWQIFKTSATKGTGLD  157 (171)
T ss_dssp             EEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCH--HHHHHHHTGGGCTTSCEEEEECCTTTCTTHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCH--HHHHHHhCchhccCCceEEEECcCCCCcCHH
Confidence            9999999999999888887776542 368999999999999764321  1111 1    122346689999999999999


Q ss_pred             HHHHHHHhhccc
Q 030364          162 ELFYEIGDCTEC  173 (178)
Q Consensus       162 ~~~~~l~~~i~~  173 (178)
                      ++|++|.+.+..
T Consensus       158 ~l~~~l~~~i~~  169 (171)
T 1upt_A          158 EAMEWLVETLKS  169 (171)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhh
Confidence            999999998754

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=100.00  E-value=1e-33  Score=187.47  Aligned_cols=157  Identities=18%  Similarity=0.320  Sum_probs=122.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEEE
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY   90 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~   90 (178)
                      +||+++|++|+|||||++++.++.+.. +.|+.+..  ...+..+  .+.+.+||+||++.+...+..+++.+|++++|+
T Consensus         1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   75 (164)
T 1r8s_A            1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFN--VETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   75 (164)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSSCC--EEEEECS--SCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCcee--EEEEEEC--CEEEEEEEcCCChhhHHHHHHHhccCCEEEEEE
Confidence            589999999999999999999888764 45555532  2333333  467889999999999999999999999999999


Q ss_pred             ECCCHhHHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCccccccCHHHHHH-H----HHHcCCeEEEEeCCCCCCHHHHH
Q 030364           91 DITSMDSFERAKKWVQELQRQ-GNPNLIMFLVANKVDLEEKRKVKNEEGEL-Y----AQENGLSFLETSAKSAHNVNELF  164 (178)
Q Consensus        91 d~~~~~s~~~~~~~~~~~~~~-~~~~~~~ivv~nK~D~~~~~~~~~~~~~~-~----~~~~~~~~~~~Sa~~~~~i~~~~  164 (178)
                      |++++++++.+..|+..+... ..++.|+++|+||+|+.+...  ..+... +    ++..+++++++||++|.|++++|
T Consensus        76 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  153 (164)
T 1r8s_A           76 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGL  153 (164)
T ss_dssp             ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHH
T ss_pred             ECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCC--HHHHHHHhCcccccCccEEEEEcccCCCcCHHHHH
Confidence            999999999998888887653 346899999999999965422  122111 1    11234689999999999999999


Q ss_pred             HHHHhhcccc
Q 030364          165 YEIGDCTECF  174 (178)
Q Consensus       165 ~~l~~~i~~~  174 (178)
                      ++|.+.+.+.
T Consensus       154 ~~l~~~i~~~  163 (164)
T 1r8s_A          154 DWLSNQLRNQ  163 (164)
T ss_dssp             HHHHHHC---
T ss_pred             HHHHHHHhhc
Confidence            9999987653

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=100.00  E-value=1.8e-31  Score=181.18  Aligned_cols=165  Identities=41%  Similarity=0.705  Sum_probs=149.0

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEE
Q 030364            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA   86 (178)
Q Consensus         7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~   86 (178)
                      .+..++|+++|++|||||||++++.+..+...+.++.+.++....+.+++..+.+.+||++|.+.+...+..+++.++++
T Consensus        26 ~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~  105 (191)
T 1oix_A           26 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGA  105 (191)
T ss_dssp             CSEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEE
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEE
Confidence            34578999999999999999999999998888888888888888889999999999999999999988999999999999


Q ss_pred             EEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Q 030364           87 VVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYE  166 (178)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  166 (178)
                      ++|+|.++..+++.+..|+..+......+.|+++++||+|+.+...+...++..++...++.++++||+++.|++++|++
T Consensus       106 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sald~~~v~~l~~~  185 (191)
T 1oix_A          106 LLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQT  185 (191)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence            99999999999999888888777665567899999999999877777778889999999999999999999999999999


Q ss_pred             HHhhc
Q 030364          167 IGDCT  171 (178)
Q Consensus       167 l~~~i  171 (178)
                      |.+.+
T Consensus       186 l~~~i  190 (191)
T 1oix_A          186 ILTEI  190 (191)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            98765

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=100.00  E-value=7.3e-32  Score=182.11  Aligned_cols=159  Identities=19%  Similarity=0.255  Sum_probs=128.5

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEE
Q 030364            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (178)
Q Consensus         8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i   87 (178)
                      .+.++|+++|.+|+|||||++++.++. ...+.++.+..  ...+.+++  +.+.+||+||++.+...+..+++.+|+++
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii   90 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFN--IKTLEHRG--FKLNIWDVGGQKSLRSYWRNYFESTDGLI   90 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEE--EEEEEETT--EEEEEEEECCSHHHHTTGGGGCTTCSEEE
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence            568999999999999999999999888 55567776644  33444444  67889999999999999999999999999


Q ss_pred             EEEECCCHhHHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCccccccCHHHHHHHH-----HHcCCeEEEEeCCCCCCHH
Q 030364           88 VVYDITSMDSFERAKKWVQELQRQ-GNPNLIMFLVANKVDLEEKRKVKNEEGELYA-----QENGLSFLETSAKSAHNVN  161 (178)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~  161 (178)
                      +|+|++++++++.+..|+..+... ...+.|+++|+||+|+.+...  .++.....     +..+++++++||++|.|++
T Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  168 (186)
T 1ksh_A           91 WVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALS--CNAIQEALELDSIRSHHWRIQGCSAVTGEDLL  168 (186)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCC--HHHHHHHhChhhccCCceEEEEeeCCCCCCHH
Confidence            999999999999998888887654 246899999999999976432  22222221     1345689999999999999


Q ss_pred             HHHHHHHhhccc
Q 030364          162 ELFYEIGDCTEC  173 (178)
Q Consensus       162 ~~~~~l~~~i~~  173 (178)
                      ++|++|.+.+.+
T Consensus       169 ~l~~~l~~~i~~  180 (186)
T 1ksh_A          169 PGIDWLLDDISS  180 (186)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHh
Confidence            999999988764

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=100.00  E-value=9.1e-33  Score=187.65  Aligned_cols=160  Identities=18%  Similarity=0.304  Sum_probs=120.7

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEE
Q 030364            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA   86 (178)
Q Consensus         7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~   86 (178)
                      ..+.+||+++|++|+|||||++++.++.+.. +.|+.+  .....+..++  +.+.+||+||++.+...+..+++.+|++
T Consensus        26 ~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~i  100 (192)
T 2b6h_A           26 GKKQMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETVEYKN--ICFTVWDVGGQDKIRPLWRHYFQNTQGL  100 (192)
T ss_dssp             TTSCEEEEEEESTTSSHHHHHHHHCSSCCEE-EEEETT--EEEEEEEETT--EEEEEEECC-----CTTHHHHHHTCCEE
T ss_pred             cCCccEEEEECCCCCCHHHHHHHHHhCCccc-cCCcCc--eeEEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEE
Confidence            4568999999999999999999999887653 344444  3333444444  7788999999999999999999999999


Q ss_pred             EEEEECCCHhHHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCccccccCHHHHHH-H----HHHcCCeEEEEeCCCCCCH
Q 030364           87 VVVYDITSMDSFERAKKWVQELQRQ-GNPNLIMFLVANKVDLEEKRKVKNEEGEL-Y----AQENGLSFLETSAKSAHNV  160 (178)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~ivv~nK~D~~~~~~~~~~~~~~-~----~~~~~~~~~~~Sa~~~~~i  160 (178)
                      ++|||++++++++.+..|+..+... ...+.|+++|+||+|+.+...  ..+... +    +...+++++++||++|.|+
T Consensus       101 ilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi  178 (192)
T 2b6h_A          101 IFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMP--VSELTDKLGLQHLRSRTWYVQATCATQGTGL  178 (192)
T ss_dssp             EEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHHHTTGGGCSSCCEEEEECBTTTTBTH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCC--HHHHHHHhCcccccCCceEEEECcCCCcCCH
Confidence            9999999999999998888887653 246899999999999965422  122111 1    1123468999999999999


Q ss_pred             HHHHHHHHhhccc
Q 030364          161 NELFYEIGDCTEC  173 (178)
Q Consensus       161 ~~~~~~l~~~i~~  173 (178)
                      +++|++|.+.+.+
T Consensus       179 ~~l~~~l~~~i~~  191 (192)
T 2b6h_A          179 YDGLDWLSHELSK  191 (192)
T ss_dssp             HHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999988753

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=100.00  E-value=1e-32  Score=185.77  Aligned_cols=160  Identities=19%  Similarity=0.257  Sum_probs=124.5

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEE
Q 030364            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (178)
Q Consensus         8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i   87 (178)
                      .+.++|+++|++|+|||||++++.++.+. .+.++.+..  ...+.+++  +.+.+||+||++.+...+..+++.+|+++
T Consensus        14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~-~~~~t~g~~--~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i   88 (181)
T 1fzq_A           14 DQEVRILLLGLDNAGKTTLLKQLASEDIS-HITPTQGFN--IKSVQSQG--FKLNVWDIGGQRKIRPYWRSYFENTDILI   88 (181)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCCSCCE-EEEEETTEE--EEEEEETT--EEEEEEECSSCGGGHHHHHHHHTTCSEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhcCCCC-cccCcCCeE--EEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence            56899999999999999999999987543 345555533  33445553  67889999999999999999999999999


Q ss_pred             EEEECCCHhHHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCccccccCHHHHHHHH-----HHcCCeEEEEeCCCCCCHH
Q 030364           88 VVYDITSMDSFERAKKWVQELQRQ-GNPNLIMFLVANKVDLEEKRKVKNEEGELYA-----QENGLSFLETSAKSAHNVN  161 (178)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~  161 (178)
                      +|||++++++++.+..|+..+... ...+.|+++|+||+|+.+....  ++.....     ...++++++|||++|.|++
T Consensus        89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~  166 (181)
T 1fzq_A           89 YVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPA--SEIAEGLNLHTIRDRVWQIQSCSALTGEGVQ  166 (181)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCH--HHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCCH--HHHHHHhCchhccCCceEEEEccCCCCCCHH
Confidence            999999999999998888776543 2468899999999999764322  2222111     1235689999999999999


Q ss_pred             HHHHHHHhhcccc
Q 030364          162 ELFYEIGDCTECF  174 (178)
Q Consensus       162 ~~~~~l~~~i~~~  174 (178)
                      ++|++|.+.+.+.
T Consensus       167 ~l~~~l~~~~~~~  179 (181)
T 1fzq_A          167 DGMNWVCKNVNAK  179 (181)
T ss_dssp             HHHHHHHHTC---
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999988654

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=100.00  E-value=2.7e-32  Score=183.59  Aligned_cols=158  Identities=19%  Similarity=0.286  Sum_probs=124.6

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEE
Q 030364            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA   86 (178)
Q Consensus         7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~   86 (178)
                      ..+.+||+++|.+|+|||||+++|.++.+ ..+.++.+...  ..+.+++  +.+.+||+||++.+...+..+++.+|++
T Consensus        18 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~i   92 (181)
T 2h17_A           18 GSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNV--EEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFV   92 (181)
T ss_dssp             ---CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSC--EEEEETT--EEEEEEEESSSGGGTCGGGGGGTTCCEE
T ss_pred             CCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceee--EEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEE
Confidence            34689999999999999999999998887 44556655443  3344454  7788999999999999999999999999


Q ss_pred             EEEEECCCHhHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCccccccCHHHHHHHH-----HHcCCeEEEEeCCCCCCH
Q 030364           87 VVVYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYA-----QENGLSFLETSAKSAHNV  160 (178)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i  160 (178)
                      ++|+|++++++++.+..|+..+.... ..+.|+++|+||+|+.+.  ...++.....     ...+++++++||++|.|+
T Consensus        93 i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi  170 (181)
T 2h17_A           93 IVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC--MTVAEISQFLKLTSIKDHQWHIQACCALTGEGL  170 (181)
T ss_dssp             EEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccC--CCHHHHHHHhCcccccCCceEEEEccCCCCcCH
Confidence            99999999999999988888876542 468999999999999653  2223332222     224568999999999999


Q ss_pred             HHHHHHHHhhc
Q 030364          161 NELFYEIGDCT  171 (178)
Q Consensus       161 ~~~~~~l~~~i  171 (178)
                      +++|++|.+.+
T Consensus       171 ~~l~~~l~~~l  181 (181)
T 2h17_A          171 CQGLEWMMSRL  181 (181)
T ss_dssp             HHHHHHHHTC-
T ss_pred             HHHHHHHHhhC
Confidence            99999998754

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=6.4e-32  Score=182.64  Aligned_cols=160  Identities=19%  Similarity=0.278  Sum_probs=125.0

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEE
Q 030364            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (178)
Q Consensus         8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i   87 (178)
                      .+.++|+++|.+|+|||||++++.++.+. .+.++.+...  ..+.+++  +.+.+||+||++.+...+..+++.+|+++
T Consensus        14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii   88 (187)
T 1zj6_A           14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSNV--EEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVI   88 (187)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSSC--EEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccce--EEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence            45899999999999999999999988776 4556555332  3344454  77889999999999999999999999999


Q ss_pred             EEEECCCHhHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCccccccCHHHHHHHH-----HHcCCeEEEEeCCCCCCHH
Q 030364           88 VVYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYA-----QENGLSFLETSAKSAHNVN  161 (178)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~  161 (178)
                      +|+|++++++++.+..|+..+.... ..+.|+++|+||+|+.+..  ..++.....     +..+++++++||++|.|++
T Consensus        89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~  166 (187)
T 1zj6_A           89 VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECM--TVAEISQFLKLTSIKDHQWHIQACCALTGEGLC  166 (187)
T ss_dssp             EEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCC--CHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHH
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCC--CHHHHHHHhChhhhcCCCcEEEEccCCCCcCHH
Confidence            9999999999999999988887643 3689999999999997532  233333332     2345699999999999999


Q ss_pred             HHHHHHHhhcccc
Q 030364          162 ELFYEIGDCTECF  174 (178)
Q Consensus       162 ~~~~~l~~~i~~~  174 (178)
                      ++|++|.+.+...
T Consensus       167 ~l~~~l~~~~~~~  179 (187)
T 1zj6_A          167 QGLEWMMSRLKIR  179 (187)
T ss_dssp             HHHHHHHHHHCC-
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999987654

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=100.00  E-value=8.6e-33  Score=186.56  Aligned_cols=166  Identities=20%  Similarity=0.413  Sum_probs=124.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhC--cCCCCccCceeeeEEEEEEEe---CCeEEEEEEEeCCCchhhhccchhhhcCCc
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVKG--QFFDFQESTIGAAFFTQVLSL---NEVTIKFDIWDTAGQERYHSLAPMYYRGAA   84 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d   84 (178)
                      .+||+++|++|||||||++++.+.  .+...+.++.+.++....+..   ++..+.+.+||++|++.+...++.+++.++
T Consensus         2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~   81 (184)
T 2zej_A            2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA   81 (184)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence            579999999999999999999985  444556677776665554433   335678999999999999999999999999


Q ss_pred             EEEEEEECCCH-hHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccC---HHHHHHHHHHcCCe----EEEEeCCC
Q 030364           85 AAVVVYDITSM-DSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVK---NEEGELYAQENGLS----FLETSAKS  156 (178)
Q Consensus        85 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~---~~~~~~~~~~~~~~----~~~~Sa~~  156 (178)
                      ++++|||++++ .+++.+..|+..+... .++.|+++|+||+|+.+...+.   ......+++.++++    ++++||++
T Consensus        82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  160 (184)
T 2zej_A           82 LYLAVYDLSKGQAEVDAMKPWLFNIKAR-ASSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATE  160 (184)
T ss_dssp             EEEEEEEGGGCHHHHHTHHHHHHHHHHH-CTTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTTS
T ss_pred             EEEEEEeCCcchhHHHHHHHHHHHHHhh-CCCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEeccc
Confidence            99999999997 5799999999888765 3578999999999987654432   23345566666776    99999999


Q ss_pred             CC-CHHHHHHHHHhhcccccc
Q 030364          157 AH-NVNELFYEIGDCTECFSL  176 (178)
Q Consensus       157 ~~-~i~~~~~~l~~~i~~~~~  176 (178)
                      |. +++++++.|.+.+...+.
T Consensus       161 ~~~~~~~l~~~i~~~~~~~~~  181 (184)
T 2zej_A          161 ESDALAKLRKTIINESLNFKI  181 (184)
T ss_dssp             CCHHHHHHHHHHHHHHHCC--
T ss_pred             CchhHHHHHHHHHHHHhcccc
Confidence            97 999999999988876553

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=100.00  E-value=4.3e-31  Score=193.02  Aligned_cols=163  Identities=27%  Similarity=0.494  Sum_probs=142.4

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEE
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVV   88 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~   88 (178)
                      ..++|+++|.+|+|||||++++.++.+...+.++.+... ...+..++..+.+.+||+||++.+...+..+++.+|++++
T Consensus       154 ~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~  232 (332)
T 2wkq_A          154 ELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLI  232 (332)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEE-EEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEE
T ss_pred             ceeEEEEECCCCCChHHHHHHHHhCCCCcccCCccccee-EEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEE
Confidence            468999999999999999999999988877777776554 4556778889999999999999999999999999999999


Q ss_pred             EEECCCHhHHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCccc------------cccCHHHHHHHHHHcCC-eEEEEeC
Q 030364           89 VYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEEK------------RKVKNEEGELYAQENGL-SFLETSA  154 (178)
Q Consensus        89 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa  154 (178)
                      |||++++.+++.+. .|+..+.... ++.|+++|+||+|+...            +.+..++...+++..++ +++++||
T Consensus       233 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa  311 (332)
T 2wkq_A          233 CFSLVSPASFHHVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA  311 (332)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHC-TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred             EEeCCCHHHHHHHHHHHHHHHHhhC-CCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEecC
Confidence            99999999999987 6777777653 48999999999998653            45677888899999997 9999999


Q ss_pred             CCCCCHHHHHHHHHhhccc
Q 030364          155 KSAHNVNELFYEIGDCTEC  173 (178)
Q Consensus       155 ~~~~~i~~~~~~l~~~i~~  173 (178)
                      ++|.|++++|++|.+.+..
T Consensus       312 ~~~~gi~~l~~~l~~~~~~  330 (332)
T 2wkq_A          312 LTQRGLKTVFDEAIRAVLC  330 (332)
T ss_dssp             TTCTTHHHHHHHHHHHHHC
T ss_pred             CCCcCHHHHHHHHHHHHhc
Confidence            9999999999999987643

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=100.00  E-value=6.6e-35  Score=199.89  Aligned_cols=163  Identities=28%  Similarity=0.505  Sum_probs=136.4

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEE
Q 030364            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA   86 (178)
Q Consensus         7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~   86 (178)
                      ..+.+||+++|.+|+|||||++++.++.+...+.++.+... ...+..++..+.+.+||+||++.+...+..+++.+|++
T Consensus        27 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i  105 (204)
T 3th5_A           27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVF  105 (204)
Confidence            35689999999999999999999998888776666665444 34456677778899999999999999999999999999


Q ss_pred             EEEEECCCHhHHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCcccc------------ccCHHHHHHHHHHcCC-eEEEE
Q 030364           87 VVVYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEEKR------------KVKNEEGELYAQENGL-SFLET  152 (178)
Q Consensus        87 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~ivv~nK~D~~~~~------------~~~~~~~~~~~~~~~~-~~~~~  152 (178)
                      ++|||++++.+++.+. .|+..+.... ++.|+++|+||+|+....            .+..++...+++..++ +++++
T Consensus       106 ilv~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~v  184 (204)
T 3th5_A          106 LICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC  184 (204)
Confidence            9999999999999986 6777776543 488999999999996543            4455666777777887 99999


Q ss_pred             eCCCCCCHHHHHHHHHhhc
Q 030364          153 SAKSAHNVNELFYEIGDCT  171 (178)
Q Consensus       153 Sa~~~~~i~~~~~~l~~~i  171 (178)
                      ||++|.|++++|++|.+.+
T Consensus       185 SA~~g~gi~~l~~~l~~~i  203 (204)
T 3th5_A          185 SALTQRGLKTVFDEAIRAV  203 (204)
Confidence            9999999999999998764

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=99.98  E-value=7.4e-33  Score=187.49  Aligned_cols=162  Identities=22%  Similarity=0.323  Sum_probs=127.3

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEE
Q 030364            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (178)
Q Consensus         8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i   87 (178)
                      ++.+||+++|.+|+|||||++++.++.+.. +.++.+..  ...+..++  +.+.+||+||++.+...+..+++.+|+++
T Consensus        20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii   94 (189)
T 2x77_A           20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVGVN--LETLQYKN--ISFEVWDLGGQTGVRPYWRCYFSDTDAVI   94 (189)
T ss_dssp             TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTTCC--EEEEEETT--EEEEEEEECCSSSSCCCCSSSSTTCCEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCceE--EEEEEECC--EEEEEEECCCCHhHHHHHHHHhhcCCEEE
Confidence            568999999999999999999998877654 45555433  33344443  67889999999999999999999999999


Q ss_pred             EEEECCCHhHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCccccccCHHHHHH-----HHHHcCCeEEEEeCCCCCCHH
Q 030364           88 VVYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGEL-----YAQENGLSFLETSAKSAHNVN  161 (178)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~-----~~~~~~~~~~~~Sa~~~~~i~  161 (178)
                      +|+|++++++++.+..|+..+.... ..+.|+++|+||+|+.+....  .+...     .+...+++++++||++|.|++
T Consensus        95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  172 (189)
T 2x77_A           95 YVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASE--AEIAEQLGVSSIMNRTWTIVKSSSKTGDGLV  172 (189)
T ss_dssp             EEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCH--HHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCH--HHHHHHhChhhccCCceEEEEccCCCccCHH
Confidence            9999999999999888887776543 468999999999999664321  22111     112345689999999999999


Q ss_pred             HHHHHHHhhcccccc
Q 030364          162 ELFYEIGDCTECFSL  176 (178)
Q Consensus       162 ~~~~~l~~~i~~~~~  176 (178)
                      +++++|.+.+.+.+.
T Consensus       173 ~l~~~l~~~i~~~~~  187 (189)
T 2x77_A          173 EGMDWLVERLREQGL  187 (189)
T ss_dssp             HHHHHHHHHHHHTC-
T ss_pred             HHHHHHHHHHHhccc
Confidence            999999998876543

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=99.98  E-value=4e-32  Score=185.02  Aligned_cols=164  Identities=21%  Similarity=0.283  Sum_probs=122.3

Q ss_pred             CCCCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEe-CCeEEEEEEEeCCCchhhhccc---hhhh
Q 030364            5 SNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSL-NEVTIKFDIWDTAGQERYHSLA---PMYY   80 (178)
Q Consensus         5 ~~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~d~~g~~~~~~~~---~~~~   80 (178)
                      ..+++.+||+++|.+|||||||++++.+. +..................+ ++..+.+.+||++|++.|....   ..++
T Consensus        15 ~~~~~~~ki~~vG~~~vGKTsLi~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~   93 (196)
T 3llu_A           15 YFQGSKPRILLMGLRRSGKSSIQKVVFHK-MSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIF   93 (196)
T ss_dssp             -----CCEEEEEESTTSSHHHHHHHHHSC-CCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHH
T ss_pred             cccCcceEEEEECCCCCCHHHHHHHHHhc-CCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhccccc
Confidence            34456899999999999999999987764 33322222222222222223 2556789999999999987776   8999


Q ss_pred             cCCcEEEEEEECCCH--hHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcc-------ccccCHHHHHHHHH----HcCC
Q 030364           81 RGAAAAVVVYDITSM--DSFERAKKWVQELQRQGNPNLIMFLVANKVDLEE-------KRKVKNEEGELYAQ----ENGL  147 (178)
Q Consensus        81 ~~~d~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~-------~~~~~~~~~~~~~~----~~~~  147 (178)
                      +.+|++|+|||++++  +++..+..|+..+... .++.|+++|+||+|+..       .+.+.......+++    ..++
T Consensus        94 ~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  172 (196)
T 3llu_A           94 RGTGALIYVIDAQDDYMEALTRLHITVSKAYKV-NPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHL  172 (196)
T ss_dssp             HTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHH-CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSCE
T ss_pred             ccCCEEEEEEECCCchHHHHHHHHHHHHHHHhc-CCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCCc
Confidence            999999999999997  6777777777776543 46899999999999754       34455556677777    6788


Q ss_pred             eEEEEeCCCCCCHHHHHHHHHhhc
Q 030364          148 SFLETSAKSAHNVNELFYEIGDCT  171 (178)
Q Consensus       148 ~~~~~Sa~~~~~i~~~~~~l~~~i  171 (178)
                      ++++|||++ .|++++|+.|++.+
T Consensus       173 ~~~e~Sa~~-~~v~~~f~~l~~~l  195 (196)
T 3llu_A          173 SFYLTSIYD-HSIFEAFSKVVQKL  195 (196)
T ss_dssp             EEEEECTTS-THHHHHHHHHHHHT
T ss_pred             ceEEEEech-hhHHHHHHHHHHHh
Confidence            999999999 99999999999875

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.97  E-value=1.8e-32  Score=184.58  Aligned_cols=159  Identities=25%  Similarity=0.352  Sum_probs=123.3

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEE
Q 030364            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (178)
Q Consensus         8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i   87 (178)
                      ++.++|+++|++|+|||||++++.++.+ ..+.++.+..  ...+.+++  +.+.+||+||++.+...+..+++.+|+++
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii   90 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFN--VETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAVI   90 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCC--EEEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence            5689999999999999999999998776 3455665533  33344444  67889999999999999999999999999


Q ss_pred             EEEECCCHhHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCccccccCHHHHHHHHH-----HcCCeEEEEeCCCCCCHH
Q 030364           88 VVYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQ-----ENGLSFLETSAKSAHNVN  161 (178)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~  161 (178)
                      +|+|++++++++.+..|+..+.... ..+.|+++|+||+|+.+..  ..++......     ..+++++++||++|.|++
T Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  168 (183)
T 1moz_A           91 FVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGAL--SASEVSKELNLVELKDRSWSIVASSAIKGEGIT  168 (183)
T ss_dssp             EEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCC--CHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCC--CHHHHHHHhCcccccCCceEEEEccCCCCcCHH
Confidence            9999999999999988888876643 4689999999999986532  2233322221     134589999999999999


Q ss_pred             HHHHHHHhhccc
Q 030364          162 ELFYEIGDCTEC  173 (178)
Q Consensus       162 ~~~~~l~~~i~~  173 (178)
                      +++++|.+.+.+
T Consensus       169 ~l~~~l~~~~~~  180 (183)
T 1moz_A          169 EGLDWLIDVIKE  180 (183)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999988754

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.97  E-value=2e-30  Score=178.77  Aligned_cols=162  Identities=22%  Similarity=0.281  Sum_probs=114.4

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCe-EEEEEEEeCCCchhhhc-cchhhhcCCc
Q 030364            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEV-TIKFDIWDTAGQERYHS-LAPMYYRGAA   84 (178)
Q Consensus         7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~d~~g~~~~~~-~~~~~~~~~d   84 (178)
                      +.+.+||+++|.+|+|||||+++|+++.+...+.++. .+...  +.+++. .+.+.+||+||++.+.. .+..+++.+|
T Consensus         4 ~~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~   80 (214)
T 2fh5_B            4 KSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSIT-DSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSAR   80 (214)
T ss_dssp             ----CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCS-CEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEE
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcc-eeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhhCC
Confidence            4568999999999999999999999998876655433 33322  555543 57889999999999987 7888899999


Q ss_pred             EEEEEEECCCHh-HHHHHHHHHHH-HHH--hCCCCceEEEEEeCCCCccccccCHH--HHH-------------------
Q 030364           85 AAVVVYDITSMD-SFERAKKWVQE-LQR--QGNPNLIMFLVANKVDLEEKRKVKNE--EGE-------------------  139 (178)
Q Consensus        85 ~~i~v~d~~~~~-s~~~~~~~~~~-~~~--~~~~~~~~ivv~nK~D~~~~~~~~~~--~~~-------------------  139 (178)
                      ++++|||+++.. ++.....++.. +..  ....+.|+++|+||+|+.........  ...                   
T Consensus        81 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~  160 (214)
T 2fh5_B           81 AVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDS  160 (214)
T ss_dssp             EEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC--------
T ss_pred             EEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccC
Confidence            999999999854 45555544444 333  22457999999999999754332110  000                   


Q ss_pred             -------------HHHH-Hc--CCeEEEEeCCCC------CCHHHHHHHHHhhc
Q 030364          140 -------------LYAQ-EN--GLSFLETSAKSA------HNVNELFYEIGDCT  171 (178)
Q Consensus       140 -------------~~~~-~~--~~~~~~~Sa~~~------~~i~~~~~~l~~~i  171 (178)
                                   .|+. .+  +++|++|||++|      .|++++|++|.+.+
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~~  214 (214)
T 2fh5_B          161 SSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKIA  214 (214)
T ss_dssp             ----CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHHC
T ss_pred             CccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHhC
Confidence                         0111 11  678999999999      99999999998753

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=99.97  E-value=5.9e-32  Score=191.10  Aligned_cols=166  Identities=23%  Similarity=0.276  Sum_probs=122.5

Q ss_pred             CCCCceeEEEEEcCC---------CCCHHHHHHHHHh---CcCCCCccCce-eeeEEEEE--------------EEeCCe
Q 030364            5 SNKNIQVKLVLLGDM---------GTGKTSLVLRFVK---GQFFDFQESTI-GAAFFTQV--------------LSLNEV   57 (178)
Q Consensus         5 ~~~~~~~~i~v~G~~---------~~GKStl~~~l~~---~~~~~~~~~~~-~~~~~~~~--------------~~~~~~   57 (178)
                      ....+.+||+++|.+         |||||||+++|.+   +.+...+.++. +.++....              ...++.
T Consensus        14 ~~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~   93 (255)
T 3c5h_A           14 LYFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCV   93 (255)
T ss_dssp             SSCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC-------
T ss_pred             CCCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCc
Confidence            344568999999999         9999999999998   45555555554 22211111              124567


Q ss_pred             EEEEEEEe-----------------------CCCchhhhccchhhhc---------------------CCcEEEEEEECC
Q 030364           58 TIKFDIWD-----------------------TAGQERYHSLAPMYYR---------------------GAAAAVVVYDIT   93 (178)
Q Consensus        58 ~~~~~i~d-----------------------~~g~~~~~~~~~~~~~---------------------~~d~~i~v~d~~   93 (178)
                      .+.+.+||                       ++|++.|...+..++.                     ++|++|+|||++
T Consensus        94 ~~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t  173 (255)
T 3c5h_A           94 ECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVS  173 (255)
T ss_dssp             --CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECB
T ss_pred             EEEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECC
Confidence            78899999                       5566666666666666                     799999999999


Q ss_pred             CH--hHHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCccccccCHHHHHHHHHH-cCCeEEEEeCCCCCCHHHHHHHHHh
Q 030364           94 SM--DSFERAKKWVQELQRQ-GNPNLIMFLVANKVDLEEKRKVKNEEGELYAQE-NGLSFLETSAKSAHNVNELFYEIGD  169 (178)
Q Consensus        94 ~~--~s~~~~~~~~~~~~~~-~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~~~~~~l~~  169 (178)
                      ++  ++++.+..|+..+... ...+.|+++|+||+|+...+.+  ++...++.. .+++++++||++|.|++++|++|.+
T Consensus       174 ~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v--~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l~~  251 (255)
T 3c5h_A          174 RGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYI--RDAHTFALSKKNLQVVETSARSNVNVDLAFSTLVQ  251 (255)
T ss_dssp             C----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHH--HHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHHHH
T ss_pred             CCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHH--HHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            98  9999999999888765 3467999999999999765544  466667765 4789999999999999999999998


Q ss_pred             hcc
Q 030364          170 CTE  172 (178)
Q Consensus       170 ~i~  172 (178)
                      .+.
T Consensus       252 ~l~  254 (255)
T 3c5h_A          252 LID  254 (255)
T ss_dssp             HHH
T ss_pred             Hhc
Confidence            764

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.97  E-value=2.3e-30  Score=171.76  Aligned_cols=154  Identities=17%  Similarity=0.190  Sum_probs=115.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhc------cchhhhc--
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHS------LAPMYYR--   81 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~------~~~~~~~--   81 (178)
                      .++|+++|++|+|||||+++|.+..+.....++.+.+.....+.+++  ..+.+||+||+..+..      +...++.  
T Consensus         3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~   80 (165)
T 2wji_A            3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIINE   80 (165)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhcC
Confidence            58999999999999999999998766544444444444444455555  5788999999877642      3345554  


Q ss_pred             CCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHH
Q 030364           82 GAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVN  161 (178)
Q Consensus        82 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  161 (178)
                      .+|++++|+|+++.+.   ...|+..+..   .+.|+++|+||+|+...+.+.. +...+++.++++++++||++|.|++
T Consensus        81 ~~~~~i~v~D~~~~~~---~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~SA~~~~~v~  153 (165)
T 2wji_A           81 KPDLVVNIVDATALER---NLYLTLQLME---MGANLLLALNKMDLAKSLGIEI-DVDKLEKILGVKVVPLSAAKKMGIE  153 (165)
T ss_dssp             CCSEEEEEEETTCHHH---HHHHHHHHHH---TTCCEEEEEECHHHHHHTTCCC-CHHHHHHHHTSCEEECBGGGTBSHH
T ss_pred             CCCEEEEEecCCchhH---hHHHHHHHHh---cCCCEEEEEEchHhccccChhh-HHHHHHHHhCCCEEEEEcCCCCCHH
Confidence            8999999999998653   3446666554   3689999999999876555443 3567788889999999999999999


Q ss_pred             HHHHHHHhhcc
Q 030364          162 ELFYEIGDCTE  172 (178)
Q Consensus       162 ~~~~~l~~~i~  172 (178)
                      ++|++|.+.+.
T Consensus       154 ~l~~~l~~~~~  164 (165)
T 2wji_A          154 ELKKAISIAVK  164 (165)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHHHHHHhh
Confidence            99999998763

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.97  E-value=1.1e-29  Score=183.77  Aligned_cols=160  Identities=20%  Similarity=0.309  Sum_probs=126.6

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCcCC---CCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhh-----hccchhhh
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFF---DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERY-----HSLAPMYY   80 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~-----~~~~~~~~   80 (178)
                      ..+||+++|.+|+|||||+++++++...   ..+.+|.+....  ...+.+ .+.+.+||+||++.+     ...+..++
T Consensus         2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~--~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~   78 (307)
T 3r7w_A            2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHS--HLRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIF   78 (307)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEE--EEEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEE--EEEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHh
Confidence            4789999999999999999999887322   124444444433  334444 578999999999988     67888899


Q ss_pred             cCCcEEEEEEECCCHhHHHHHHHHHHHHHHhC--CCCceEEEEEeCCCCcc--ccc----cCHHHHHHHHHHcC---CeE
Q 030364           81 RGAAAAVVVYDITSMDSFERAKKWVQELQRQG--NPNLIMFLVANKVDLEE--KRK----VKNEEGELYAQENG---LSF  149 (178)
Q Consensus        81 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~~ivv~nK~D~~~--~~~----~~~~~~~~~~~~~~---~~~  149 (178)
                      +.+|++|+|||++++++++.+..|...+....  .++.|+++|+||+|+..  .+.    +..++...+++.++   +++
T Consensus        79 ~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~  158 (307)
T 3r7w_A           79 QMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIG  158 (307)
T ss_dssp             TTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEE
T ss_pred             ccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEE
Confidence            99999999999999999999877755544321  56899999999999876  343    45567788888887   799


Q ss_pred             EEEeCCCCCCHHHHHHHHHhhcc
Q 030364          150 LETSAKSAHNVNELFYEIGDCTE  172 (178)
Q Consensus       150 ~~~Sa~~~~~i~~~~~~l~~~i~  172 (178)
                      +++||++ .|+.++|..+++.+-
T Consensus       159 ~~tSa~~-~~i~e~~~~iv~~li  180 (307)
T 3r7w_A          159 FPTSIWD-ESLYKAWSQIVCSLI  180 (307)
T ss_dssp             EECCTTS-SHHHHHHHHHHHTTC
T ss_pred             EEeeecC-ChHHHHHHHHHHHHc
Confidence            9999999 899999999887653

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.97  E-value=1e-29  Score=170.31  Aligned_cols=160  Identities=18%  Similarity=0.199  Sum_probs=121.8

Q ss_pred             CCCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcE
Q 030364            6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAA   85 (178)
Q Consensus         6 ~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~   85 (178)
                      ..++.++|+++|.+|+|||||+++|.++.+...+.++.+.+.....+.+++.  .+.+||+||++.+...+..++..+|+
T Consensus         4 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~d~   81 (178)
T 2lkc_A            4 MVERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDK--KITFLDTPGHEAFTTMRARGAQVTDI   81 (178)
T ss_dssp             TCCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTE--EEEESCCCSSSSSSCSCCSSCCCCCE
T ss_pred             cCCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCc--eEEEEECCCCHHHHHHHHHHHhhCCE
Confidence            3456899999999999999999999998887666666555555555666664  46699999999999999999999999


Q ss_pred             EEEEEECCC---HhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHH-------cC--CeEEEEe
Q 030364           86 AVVVYDITS---MDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQE-------NG--LSFLETS  153 (178)
Q Consensus        86 ~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~-------~~--~~~~~~S  153 (178)
                      +++|+|+++   .++++.+    ..+   ...+.|+++|+||+|+....   .++.......       ++  ++++++|
T Consensus        82 ~i~v~d~~~~~~~~~~~~l----~~~---~~~~~p~ilv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~S  151 (178)
T 2lkc_A           82 VILVVAADDGVMPQTVEAI----NHA---KAANVPIIVAINKMDKPEAN---PDRVMQELMEYNLVPEEWGGDTIFCKLS  151 (178)
T ss_dssp             EEEEEETTCCCCHHHHHHH----HHH---GGGSCCEEEEEETTTSSCSC---HHHHHHHHTTTTCCBTTTTSSEEEEECC
T ss_pred             EEEEEECCCCCcHHHHHHH----HHH---HhCCCCEEEEEECccCCcCC---HHHHHHHHHhcCcChhHcCCcccEEEEe
Confidence            999999998   3444332    222   23478999999999986531   1222222222       12  5899999


Q ss_pred             CCCCCCHHHHHHHHHhhccccccC
Q 030364          154 AKSAHNVNELFYEIGDCTECFSLQ  177 (178)
Q Consensus       154 a~~~~~i~~~~~~l~~~i~~~~~~  177 (178)
                      |++|.|++++|++|.+.+...+.+
T Consensus       152 a~~~~gv~~l~~~l~~~~~~~~~~  175 (178)
T 2lkc_A          152 AKTKEGLDHLLEMILLVSEMEELK  175 (178)
T ss_dssp             SSSSHHHHHHHHHHHHHHHHTTTT
T ss_pred             cCCCCCHHHHHHHHHHhhhhhccc
Confidence            999999999999999988876654

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.97  E-value=3.1e-29  Score=174.50  Aligned_cols=163  Identities=13%  Similarity=0.070  Sum_probs=115.3

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCch------h----hhccch
Q 030364            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE------R----YHSLAP   77 (178)
Q Consensus         8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~------~----~~~~~~   77 (178)
                      ...++|+|+|.+|+|||||+++|+++.+.....+..+.+........++  +.+.+||+||..      .    +.. ..
T Consensus        27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~-~~  103 (228)
T 2qu8_A           27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL--NKYQIIDTPGLLDRAFENRNTIEMTT-IT  103 (228)
T ss_dssp             TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETT--EEEEEEECTTTTTSCGGGCCHHHHHH-HH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC--CeEEEEECCCCcCcccchhhhHHHHH-HH
Confidence            4579999999999999999999998876432222223333333333444  578899999983      2    222 23


Q ss_pred             hhhcCCcEEEEEEECCCHhHHHH--HHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHH---HHHHHHHHcC--CeEE
Q 030364           78 MYYRGAAAAVVVYDITSMDSFER--AKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNE---EGELYAQENG--LSFL  150 (178)
Q Consensus        78 ~~~~~~d~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~---~~~~~~~~~~--~~~~  150 (178)
                      .++..+|++++|||++++.+++.  ...|+..+... .++.|+++|+||+|+...+.+...   ....++...+  ++++
T Consensus       104 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (228)
T 2qu8_A          104 ALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSV-FSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFS  182 (228)
T ss_dssp             HHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTC-C-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEE
T ss_pred             HhhccccEEEEEEecccccCcchHHHHHHHHHHHHh-hcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEE
Confidence            45788899999999999877642  23444555433 357899999999999876666554   4556666676  8999


Q ss_pred             EEeCCCCCCHHHHHHHHHhhcccc
Q 030364          151 ETSAKSAHNVNELFYEIGDCTECF  174 (178)
Q Consensus       151 ~~Sa~~~~~i~~~~~~l~~~i~~~  174 (178)
                      ++||++|.|++++|++|.+.+...
T Consensus       183 ~~SA~~g~gi~~l~~~l~~~i~~~  206 (228)
T 2qu8_A          183 SFSTLTGVGVEQAKITACELLKND  206 (228)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred             EEecccCCCHHHHHHHHHHHHHHH
Confidence            999999999999999999887643

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.97  E-value=1.7e-30  Score=189.64  Aligned_cols=159  Identities=18%  Similarity=0.306  Sum_probs=118.8

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEE
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVV   88 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~   88 (178)
                      +.+||+|+|.+|+|||||+++|.++.+... .++.+..  ...+...  .+.+.+||+||++.+...+..+++.+|++|+
T Consensus       164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~-~pT~~~~--~~~~~~~--~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vil  238 (329)
T 3o47_A          164 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFN--VETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIF  238 (329)
T ss_dssp             CSEEEEEEESTTSSHHHHHHHTCSSCCEEE-EEETTEE--EEEEEET--TEEEEEEECC-----CCSHHHHHTTEEEEEE
T ss_pred             CcceEEEECCCCccHHHHHHHHhCCCCCCc-ccccceE--EEEEecC--cEEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence            467999999999999999999998876542 2333333  2333344  3678899999999999999999999999999


Q ss_pred             EEECCCHhHHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCccccccCHHHHHHHH-----HHcCCeEEEEeCCCCCCHHH
Q 030364           89 VYDITSMDSFERAKKWVQELQRQ-GNPNLIMFLVANKVDLEEKRKVKNEEGELYA-----QENGLSFLETSAKSAHNVNE  162 (178)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~  162 (178)
                      |||++++++++.+..++..+... ..++.|+++|+||+|+.+...  .++.....     ...+++++++||++|.|+++
T Consensus       239 V~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~e  316 (329)
T 3o47_A          239 VVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRHRNWYIQATCATSGDGLYE  316 (329)
T ss_dssp             EEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHH
T ss_pred             EEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccC--HHHHHHHhchhhhhcCCCEEEEEECCCCcCHHH
Confidence            99999999999988887776553 346899999999999976432  22221111     12345899999999999999


Q ss_pred             HHHHHHhhcccc
Q 030364          163 LFYEIGDCTECF  174 (178)
Q Consensus       163 ~~~~l~~~i~~~  174 (178)
                      +|++|.+.+...
T Consensus       317 l~~~l~~~l~~~  328 (329)
T 3o47_A          317 GLDWLSNQLRNQ  328 (329)
T ss_dssp             HHHHHHHHHTC-
T ss_pred             HHHHHHHHHHhc
Confidence            999999987653

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.96  E-value=1.7e-29  Score=171.55  Aligned_cols=159  Identities=16%  Similarity=0.189  Sum_probs=110.5

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCC----------chhhhccc
Q 030364            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAG----------QERYHSLA   76 (178)
Q Consensus         7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g----------~~~~~~~~   76 (178)
                      ....++|+++|.+|+|||||+++|.++.+...+.++.+.+........++   .+.+||+||          ++.+...+
T Consensus        20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~   96 (195)
T 1svi_A           20 EGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMI   96 (195)
T ss_dssp             CSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHHH
Confidence            34589999999999999999999998876665666666555444444444   478999999          67777777


Q ss_pred             hhhhcCC---cEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCH--HHHHH-HHHHcCCeEE
Q 030364           77 PMYYRGA---AAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKN--EEGEL-YAQENGLSFL  150 (178)
Q Consensus        77 ~~~~~~~---d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~--~~~~~-~~~~~~~~~~  150 (178)
                      ..++..+   |++++|+|++++.++.... ++..+..   .+.|+++|+||+|+....++..  ++... +....+++++
T Consensus        97 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (195)
T 1svi_A           97 ETYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY---YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELI  172 (195)
T ss_dssp             HHHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEE
T ss_pred             HHHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCceE
Confidence            7777777   9999999999877666532 2222322   4789999999999976554332  12222 3223467999


Q ss_pred             EEeCCCCCCHHHHHHHHHhhcc
Q 030364          151 ETSAKSAHNVNELFYEIGDCTE  172 (178)
Q Consensus       151 ~~Sa~~~~~i~~~~~~l~~~i~  172 (178)
                      ++||++|.|++++|++|.+.+.
T Consensus       173 ~~Sa~~~~gv~~l~~~l~~~l~  194 (195)
T 1svi_A          173 LFSSETKKGKDEAWGAIKKMIN  194 (195)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHHT
T ss_pred             EEEccCCCCHHHHHHHHHHHhc
Confidence            9999999999999999998765

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.96  E-value=5.1e-29  Score=168.32  Aligned_cols=158  Identities=18%  Similarity=0.172  Sum_probs=122.4

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhh------ccchhhhc-
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYH------SLAPMYYR-   81 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~------~~~~~~~~-   81 (178)
                      +.++|+++|++|+|||||+++|.+..+.....++.+.+.....+..++  +.+.+||+||+..+.      ..+..++. 
T Consensus         6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~   83 (188)
T 2wjg_A            6 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIIN   83 (188)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHHHhc
Confidence            578999999999999999999998765544455555555556666665  678899999987764      23455554 


Q ss_pred             -CCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCH
Q 030364           82 -GAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNV  160 (178)
Q Consensus        82 -~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  160 (178)
                       .+|++++|+|.++   ++....|+..+..   .+.|+++|+||+|+.....+. .....+++.++++++++||++|.|+
T Consensus        84 ~~~~~~i~v~d~~~---~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~Sa~~~~~v  156 (188)
T 2wjg_A           84 EKPDLVVNIVDATA---LERNLYLTLQLME---MGANLLLALNKMDLAKSLGIE-IDVDKLEKILGVKVVPLSAAKKMGI  156 (188)
T ss_dssp             HCCSEEEEEEEGGG---HHHHHHHHHHHHT---TTCCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBGGGTBSH
T ss_pred             cCCCEEEEEecchh---HHHHHHHHHHHHh---cCCCEEEEEEhhhccccccch-HHHHHHHHHhCCCeEEEEecCCCCH
Confidence             5999999999886   4455566666654   478999999999987655544 3567778888999999999999999


Q ss_pred             HHHHHHHHhhccccc
Q 030364          161 NELFYEIGDCTECFS  175 (178)
Q Consensus       161 ~~~~~~l~~~i~~~~  175 (178)
                      +++|++|.+.+....
T Consensus       157 ~~l~~~i~~~~~~~~  171 (188)
T 2wjg_A          157 EELKKAISIAVKDKK  171 (188)
T ss_dssp             HHHHHHHHHHHTTC-
T ss_pred             HHHHHHHHHHHHhcc
Confidence            999999999876543

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=99.96  E-value=4.2e-30  Score=184.94  Aligned_cols=154  Identities=21%  Similarity=0.239  Sum_probs=117.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCcCCC---CccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhc---cchhhhcCCcE
Q 030364           12 KLVLLGDMGTGKTSLVLRFVKGQFFD---FQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHS---LAPMYYRGAAA   85 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~---~~~~~~~~~d~   85 (178)
                      ||+++|..|+|||||++++.++....   ...+|.+.+...    ++ ..+++++|||+|+++|..   .+..+++++++
T Consensus         1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~----v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~   75 (331)
T 3r7w_B            1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH----FS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGA   75 (331)
T ss_dssp             CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE----EC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSE
T ss_pred             CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE----Ec-cEEEEEEEECCCchhccchhhhhhhhccCCCE
Confidence            68999999999999999887654332   245666655432    22 347899999999999964   36889999999


Q ss_pred             EEEEEECCCH--hHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccc-------cccCHHHHHHHHHH----cCCeEEEE
Q 030364           86 AVVVYDITSM--DSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEK-------RKVKNEEGELYAQE----NGLSFLET  152 (178)
Q Consensus        86 ~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~-------~~~~~~~~~~~~~~----~~~~~~~~  152 (178)
                      +|+|||++++  ++...+..|+..+... .++.|+++++||+|+...       +++..+++.++++.    ++++|++|
T Consensus        76 ~IlV~Ditd~~~~~~~~l~~~l~~~~~~-~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eT  154 (331)
T 3r7w_B           76 LVYVIDSQDEYINAITNLAMIIEYAYKV-NPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLT  154 (331)
T ss_dssp             EEEECCCSSCTTHHHHHHHHHHHHHHHH-CTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECC
T ss_pred             EEEEEECCchHHHHHHHHHHHHHHHhhc-CCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEe
Confidence            9999999997  3333333334444433 568999999999999653       34666677778875    67899999


Q ss_pred             eCCCCCCHHHHHHHHHhhcc
Q 030364          153 SAKSAHNVNELFYEIGDCTE  172 (178)
Q Consensus       153 Sa~~~~~i~~~~~~l~~~i~  172 (178)
                      ||++ .+|.++|..|++.+-
T Consensus       155 SAkd-~nV~eAFs~iv~~li  173 (331)
T 3r7w_B          155 SIFD-HSIYEAFSRIVQKLI  173 (331)
T ss_dssp             CSSS-SHHHHHHHHHHTTSS
T ss_pred             ccCC-CcHHHHHHHHHHHHH
Confidence            9998 699999999998764

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=99.96  E-value=3.2e-29  Score=169.47  Aligned_cols=157  Identities=18%  Similarity=0.220  Sum_probs=117.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCC-----------chhhhccchhh
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAG-----------QERYHSLAPMY   79 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g-----------~~~~~~~~~~~   79 (178)
                      +||+++|.+|+|||||++++.++.+...+.++.+....  .....    .+.+||+||           ++.+...+..+
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~--~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~   75 (190)
T 2cxx_A            2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKII--EIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHF   75 (190)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCE--EEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeE--EEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHH
Confidence            68999999999999999999998876655554443322  22233    577999999           66777777777


Q ss_pred             hcC-CcEEEEEEECCCHhHHHHH-HHHHHH--------H-HHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCe
Q 030364           80 YRG-AAAAVVVYDITSMDSFERA-KKWVQE--------L-QRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLS  148 (178)
Q Consensus        80 ~~~-~d~~i~v~d~~~~~s~~~~-~~~~~~--------~-~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~  148 (178)
                      ++. ++++++|+++.+..+++.+ ..|...        + ......+.|+++|+||+|+....   .+....+++.++++
T Consensus        76 ~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---~~~~~~~~~~~~~~  152 (190)
T 2cxx_A           76 IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV---QEVINFLAEKFEVP  152 (190)
T ss_dssp             HHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH---HHHHHHHHHHHTCC
T ss_pred             HHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH---HHHHHHHHHHhhhh
Confidence            777 7777777777777777765 445432        1 22223578999999999987644   45677777777764


Q ss_pred             -------EEEEeCCCCCCHHHHHHHHHhhcccccc
Q 030364          149 -------FLETSAKSAHNVNELFYEIGDCTECFSL  176 (178)
Q Consensus       149 -------~~~~Sa~~~~~i~~~~~~l~~~i~~~~~  176 (178)
                             ++++||++|.|++++|++|.+.+...+.
T Consensus       153 ~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~  187 (190)
T 2cxx_A          153 LSEIDKVFIPISAKFGDNIERLKNRIFEVIRERQG  187 (190)
T ss_dssp             GGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC--
T ss_pred             hhccCCcEEEEecCCCCCHHHHHHHHHHhcchhhc
Confidence                   7999999999999999999998876543

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.96  E-value=2.8e-28  Score=172.35  Aligned_cols=157  Identities=17%  Similarity=0.141  Sum_probs=118.3

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccc------hhhh
Q 030364            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLA------PMYY   80 (178)
Q Consensus         7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~------~~~~   80 (178)
                      +.+.++|+++|++|+|||||+++|++..+.....+..+.......+..++  +.+.+||+||...+...+      ..++
T Consensus         2 ~~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~e~v~~~~~   79 (258)
T 3a1s_A            2 PLHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKG--YTINLIDLPGTYSLGYSSIDEKIARDYL   79 (258)
T ss_dssp             -CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSSCCSSSHHHHHHHHHH
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECC--eEEEEEECCCcCccCCCCHHHHHHHHHH
Confidence            34679999999999999999999998765433334444444344444444  678899999987765432      4454


Q ss_pred             --cCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCC
Q 030364           81 --RGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAH  158 (178)
Q Consensus        81 --~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  158 (178)
                        ..+|++++|+|+++.++..   .|...+..   .+.|+++|+||+|+...+.+.. ....+++.++++++++||++|.
T Consensus        80 ~~~~~d~ii~V~D~t~~~~~~---~~~~~l~~---~~~pvilv~NK~Dl~~~~~i~~-~~~~l~~~lg~~vi~~SA~~g~  152 (258)
T 3a1s_A           80 LKGDADLVILVADSVNPEQSL---YLLLEILE---MEKKVILAMTAIDEAKKTGMKI-DRYELQKHLGIPVVFTSSVTGE  152 (258)
T ss_dssp             HHSCCSEEEEEEETTSCHHHH---HHHHHHHT---TTCCEEEEEECHHHHHHTTCCB-CHHHHHHHHCSCEEECCTTTCT
T ss_pred             hhcCCCEEEEEeCCCchhhHH---HHHHHHHh---cCCCEEEEEECcCCCCccchHH-HHHHHHHHcCCCEEEEEeeCCc
Confidence              5899999999999865432   34445543   3789999999999876555543 4677888899999999999999


Q ss_pred             CHHHHHHHHHhhcc
Q 030364          159 NVNELFYEIGDCTE  172 (178)
Q Consensus       159 ~i~~~~~~l~~~i~  172 (178)
                      |++++|++|.+.+.
T Consensus       153 gi~el~~~i~~~~~  166 (258)
T 3a1s_A          153 GLEELKEKIVEYAQ  166 (258)
T ss_dssp             THHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhh
Confidence            99999999998764

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.96  E-value=4.1e-29  Score=166.81  Aligned_cols=156  Identities=19%  Similarity=0.181  Sum_probs=113.4

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCcCC-CCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhcc--------chhh
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFF-DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSL--------APMY   79 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~--------~~~~   79 (178)
                      +..+|+++|.+|+|||||+++|.+.... ....+..+.+.....+.+++.  .+.+||+||...+...        ...+
T Consensus         3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~   80 (172)
T 2gj8_A            3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGM--PLHIIDTAGLREASDEVERIGIERAWQE   80 (172)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTE--EEEEEECCCCSCCSSHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCe--EEEEEECCCcccchhHHHHHHHHHHHHH
Confidence            4689999999999999999999987642 122333444555566667764  4679999998543211        1235


Q ss_pred             hcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCC
Q 030364           80 YRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHN  159 (178)
Q Consensus        80 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  159 (178)
                      ++.+|++++|+|++++.+++. ..|+..+......+.|+++|+||+|+.+...       .++...+++++++||++|.|
T Consensus        81 ~~~ad~~i~v~D~~~~~s~~~-~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~-------~~~~~~~~~~~~~SA~~g~g  152 (172)
T 2gj8_A           81 IEQADRVLFMVDGTTTDAVDP-AEIWPEFIARLPAKLPITVVRNKADITGETL-------GMSEVNGHALIRLSARTGEG  152 (172)
T ss_dssp             HHTCSEEEEEEETTTCCCCSH-HHHCHHHHHHSCTTCCEEEEEECHHHHCCCC-------EEEEETTEEEEECCTTTCTT
T ss_pred             HHhCCEEEEEEECCCCCCHHH-HHHHHHHHHhcccCCCEEEEEECccCCcchh-------hhhhccCCceEEEeCCCCCC
Confidence            789999999999999887763 4677777666556799999999999854211       11223467999999999999


Q ss_pred             HHHHHHHHHhhcccc
Q 030364          160 VNELFYEIGDCTECF  174 (178)
Q Consensus       160 i~~~~~~l~~~i~~~  174 (178)
                      ++++|++|.+.+...
T Consensus       153 v~~l~~~l~~~~~~~  167 (172)
T 2gj8_A          153 VDVLRNHLKQSMGFD  167 (172)
T ss_dssp             HHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHhhhc
Confidence            999999999887643

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.96  E-value=1.6e-28  Score=161.79  Aligned_cols=150  Identities=21%  Similarity=0.154  Sum_probs=105.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCcCC-CCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchh-------hhccchhhhcC
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVKGQFF-DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER-------YHSLAPMYYRG   82 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~-------~~~~~~~~~~~   82 (178)
                      .||+++|.+|+|||||++++.++.+. ....+..+.+........++.  .+.+||+||...       +...+..+++.
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~   79 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRG--RFLLVDTGGLWSGDKWEKKIQEKVDRALED   79 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTE--EEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCc--eEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence            58999999999999999999988743 222333333444555566664  677999999876       34455667899


Q ss_pred             CcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCC-eEEEEeCCCCCCHH
Q 030364           83 AAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGL-SFLETSAKSAHNVN  161 (178)
Q Consensus        83 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~  161 (178)
                      +|++++|+|++++.+... ..+...+..   .+.|+++|+||+|+.+..    ++...++ ..++ +++++||++|.|++
T Consensus        80 ~~~~i~v~d~~~~~~~~~-~~~~~~~~~---~~~p~ilv~nK~Dl~~~~----~~~~~~~-~~~~~~~~~~Sa~~~~gv~  150 (161)
T 2dyk_A           80 AEVVLFAVDGRAELTQAD-YEVAEYLRR---KGKPVILVATKVDDPKHE----LYLGPLY-GLGFGDPIPTSSEHARGLE  150 (161)
T ss_dssp             CSEEEEEEESSSCCCHHH-HHHHHHHHH---HTCCEEEEEECCCSGGGG----GGCGGGG-GGSSCSCEECBTTTTBSHH
T ss_pred             CCEEEEEEECCCcccHhH-HHHHHHHHh---cCCCEEEEEECcccccch----HhHHHHH-hCCCCCeEEEecccCCChH
Confidence            999999999998543322 112222222   468899999999997652    2223344 4666 89999999999999


Q ss_pred             HHHHHHHhhc
Q 030364          162 ELFYEIGDCT  171 (178)
Q Consensus       162 ~~~~~l~~~i  171 (178)
                      ++|++|.+.+
T Consensus       151 ~l~~~l~~~l  160 (161)
T 2dyk_A          151 ELLEAIWERL  160 (161)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHhC
Confidence            9999999875

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=99.96  E-value=3e-29  Score=193.79  Aligned_cols=164  Identities=19%  Similarity=0.266  Sum_probs=125.0

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEE------Ee--CCeEEEEEEEeCCCchhhhccchh
Q 030364            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVL------SL--NEVTIKFDIWDTAGQERYHSLAPM   78 (178)
Q Consensus         7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~------~~--~~~~~~~~i~d~~g~~~~~~~~~~   78 (178)
                      ....+||+++|.+|||||||++++.++.+...+.++.+.+......      ..  ++..+.+.+||+||++.+......
T Consensus        38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~  117 (535)
T 3dpu_A           38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQF  117 (535)
T ss_dssp             CCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHH
T ss_pred             cccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHH
Confidence            4568999999999999999999999998887778888777665421      12  334578899999999999999999


Q ss_pred             hhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCC
Q 030364           79 YYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAH  158 (178)
Q Consensus        79 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  158 (178)
                      +++.+|++++|+|+++.   +.+..|+..+.... ++.|+++|+||+|+.....+..++...++...+++++++||++|.
T Consensus       118 ~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~-~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~  193 (535)
T 3dpu_A          118 FMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYG-GKSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGD  193 (535)
T ss_dssp             HHHSSEEEEEEECGGGG---GGHHHHHHHHHHHS-SSCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEEECCC----
T ss_pred             HccCCcEEEEEEeCCCc---hhHHHHHHHHHHhC-CCCCEEEEEECCCcccccccCHHHHHHHHHhcCCceEEEecCccc
Confidence            99999999999999865   44567777777763 478999999999998877777788888888889999999999999


Q ss_pred             CHHHHHHHHHhhcccc
Q 030364          159 NVNELFYEIGDCTECF  174 (178)
Q Consensus       159 ~i~~~~~~l~~~i~~~  174 (178)
                      |+++++++|.+.+...
T Consensus       194 gi~eL~~~l~~~~~~~  209 (535)
T 3dpu_A          194 GVESIAKSLKSAVLHP  209 (535)
T ss_dssp             -CTTHHHHHHHHHTCT
T ss_pred             CHHHHHHHHHHHHhcc
Confidence            9999999999987653

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.96  E-value=3.8e-28  Score=175.77  Aligned_cols=165  Identities=15%  Similarity=0.061  Sum_probs=123.6

Q ss_pred             CCCCceeEEEEEcCCCCCHHHHHHHHHhCcCCCC-ccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhh----------
Q 030364            5 SNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDF-QESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYH----------   73 (178)
Q Consensus         5 ~~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~----------   73 (178)
                      +.+.+.-.|+++|.+|||||||+|+|++.++... ..+..+..........+ ..+++.+|||||...+.          
T Consensus         5 ~~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~-~~~~i~lvDTPG~~~~~~~~~l~~~~~   83 (308)
T 3iev_A            5 HHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIP-NEAQIIFLDTPGIYEPKKSDVLGHSMV   83 (308)
T ss_dssp             --CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET-TTEEEEEEECCCCCCCCTTCHHHHHHH
T ss_pred             CCCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecC-CCCeEEEEECcCCCccccchhHHHHHH
Confidence            4556788999999999999999999998876531 22222222223333333 13678899999985433          


Q ss_pred             ccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcC--CeEEE
Q 030364           74 SLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENG--LSFLE  151 (178)
Q Consensus        74 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~  151 (178)
                      .....++..+|++++|+|++++.+......|+..+..   .+.|+++|+||+|+.............+.+..+  .++++
T Consensus        84 ~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~---~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~  160 (308)
T 3iev_A           84 EIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP---LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVP  160 (308)
T ss_dssp             HHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG---GCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEE
T ss_pred             HHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh---cCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEEE
Confidence            4556778999999999999998777776666666655   368999999999987444444566677777765  78999


Q ss_pred             EeCCCCCCHHHHHHHHHhhccc
Q 030364          152 TSAKSAHNVNELFYEIGDCTEC  173 (178)
Q Consensus       152 ~Sa~~~~~i~~~~~~l~~~i~~  173 (178)
                      +||++|.|+++++++|.+.+..
T Consensus       161 vSA~~g~gv~~L~~~l~~~l~~  182 (308)
T 3iev_A          161 ISALKGANLDELVKTILKYLPE  182 (308)
T ss_dssp             CBTTTTBSHHHHHHHHHHHSCB
T ss_pred             EeCCCCCCHHHHHHHHHHhCcc
Confidence            9999999999999999998764

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=99.95  E-value=2.2e-28  Score=173.82  Aligned_cols=154  Identities=18%  Similarity=0.162  Sum_probs=115.4

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhh------ccchhhhc-
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYH------SLAPMYYR-   81 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~------~~~~~~~~-   81 (178)
                      ..++|+++|++|||||||+|+|++........+  +.+.......+.. .+.+.+||+||...+.      .+...++. 
T Consensus         2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~p--g~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~   78 (272)
T 3b1v_A            2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWP--GVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLS   78 (272)
T ss_dssp             -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSS--CCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHCCCCcccCCC--CCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhc
Confidence            357999999999999999999998753322223  3333333444454 5678899999987765      34455555 


Q ss_pred             -CCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCH
Q 030364           82 -GAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNV  160 (178)
Q Consensus        82 -~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  160 (178)
                       .+|++++|+|+++.+..   ..|...+..   .+.|+++++||+|+.....+. .....+++.++++++++||++|.|+
T Consensus        79 ~~~d~vi~V~D~t~~e~~---~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~~-~~~~~l~~~lg~~vi~~SA~~g~gi  151 (272)
T 3b1v_A           79 QRADSILNVVDATNLERN---LYLTTQLIE---TGIPVTIALNMIDVLDGQGKK-INVDKLSYHLGVPVVATSALKQTGV  151 (272)
T ss_dssp             TCCSEEEEEEEGGGHHHH---HHHHHHHHH---TCSCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBTTTTBSH
T ss_pred             CCCCEEEEEecCCchHhH---HHHHHHHHh---cCCCEEEEEEChhhCCcCCcH-HHHHHHHHHcCCCEEEEEccCCCCH
Confidence             69999999999986544   344455544   478999999999987655444 3556788888999999999999999


Q ss_pred             HHHHHHHHhhcc
Q 030364          161 NELFYEIGDCTE  172 (178)
Q Consensus       161 ~~~~~~l~~~i~  172 (178)
                      +++|++|.+.+.
T Consensus       152 ~el~~~i~~~~~  163 (272)
T 3b1v_A          152 DQVVKKAAHTTT  163 (272)
T ss_dssp             HHHHHHHHHSCT
T ss_pred             HHHHHHHHHHHh
Confidence            999999998764

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=99.95  E-value=2.5e-27  Score=160.73  Aligned_cols=157  Identities=18%  Similarity=0.238  Sum_probs=112.6

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCC----------chhhhccc
Q 030364            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAG----------QERYHSLA   76 (178)
Q Consensus         7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g----------~~~~~~~~   76 (178)
                      +...++|+++|.+|+|||||++++.++.. ....++.+.+........+.   .+.+||+||          ++.+...+
T Consensus        20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~~~~~~~~   95 (195)
T 3pqc_A           20 PPLKGEVAFVGRSNVGKSSLLNALFNRKI-AFVSKTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKERMLWKRLV   95 (195)
T ss_dssp             CCTTCEEEEEEBTTSSHHHHHHHHHTSCC-SCCCSSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHcCcc-ccccCCCCCccCeEEEEECC---cEEEEECCCCccccCChhhHHHHHHHH
Confidence            34578999999999999999999998873 33455555444444433433   466999999          66677777


Q ss_pred             hhhhcCC---cEEEEEEECCCHhHH--HHHHHHHHHHHHhCCCCceEEEEEeCCCCccccc--cCHHHHHHHHHH-cCCe
Q 030364           77 PMYYRGA---AAAVVVYDITSMDSF--ERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRK--VKNEEGELYAQE-NGLS  148 (178)
Q Consensus        77 ~~~~~~~---d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~--~~~~~~~~~~~~-~~~~  148 (178)
                      ..+++.+   |++++|+|++++.+.  ..+..|+.   ..   +.|+++|+||+|+....+  ...++...++.. .+++
T Consensus        96 ~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~---~~---~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  169 (195)
T 3pqc_A           96 EDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMK---SL---NIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYT  169 (195)
T ss_dssp             HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHH---HT---TCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSC
T ss_pred             HHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHH---Hc---CCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCc
Confidence            7777766   999999999875333  22323332   22   689999999999865432  223344555555 3479


Q ss_pred             EEEEeCCCCCCHHHHHHHHHhhccc
Q 030364          149 FLETSAKSAHNVNELFYEIGDCTEC  173 (178)
Q Consensus       149 ~~~~Sa~~~~~i~~~~~~l~~~i~~  173 (178)
                      ++++||++|.|++++|++|.+.+..
T Consensus       170 ~~~~Sa~~~~gv~~l~~~l~~~l~~  194 (195)
T 3pqc_A          170 IIPTSSVTGEGISELLDLISTLLKE  194 (195)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred             eEEEecCCCCCHHHHHHHHHHHhhc
Confidence            9999999999999999999988753

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.95  E-value=3.3e-28  Score=171.71  Aligned_cols=151  Identities=17%  Similarity=0.134  Sum_probs=115.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhc----------cchhhh
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHS----------LAPMYY   80 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~----------~~~~~~   80 (178)
                      .+|+++|.+|+|||||+|+|++........+..+.+.....+.+++.  .+.+||+||...+..          +...++
T Consensus         2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~   79 (256)
T 3iby_A            2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEH--LIEITDLPGVYSLVANAEGISQDEQIAAQSV   79 (256)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTE--EEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCe--EEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence            48999999999999999999988654444455555566666666664  678999999866653          345566


Q ss_pred             --cCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCC
Q 030364           81 --RGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAH  158 (178)
Q Consensus        81 --~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  158 (178)
                        ..+|++++|+|+++.+....+..+   +.   ..+.|+++|+||+|+........ ....+.+.++++++++||++|.
T Consensus        80 ~~~~~d~vi~VvDas~~~~~~~l~~~---l~---~~~~pvilv~NK~Dl~~~~~~~~-~~~~l~~~lg~~vi~~SA~~g~  152 (256)
T 3iby_A           80 IDLEYDCIINVIDACHLERHLYLTSQ---LF---ELGKPVVVALNMMDIAEHRGISI-DTEKLESLLGCSVIPIQAHKNI  152 (256)
T ss_dssp             HHSCCSEEEEEEEGGGHHHHHHHHHH---HT---TSCSCEEEEEECHHHHHHTTCEE-CHHHHHHHHCSCEEECBGGGTB
T ss_pred             hhCCCCEEEEEeeCCCchhHHHHHHH---HH---HcCCCEEEEEEChhcCCcCCcHH-HHHHHHHHcCCCEEEEECCCCC
Confidence              889999999999986655443322   22   23789999999999876544332 3455777889999999999999


Q ss_pred             CHHHHHHHHHhh
Q 030364          159 NVNELFYEIGDC  170 (178)
Q Consensus       159 ~i~~~~~~l~~~  170 (178)
                      |+++++++|.+.
T Consensus       153 gi~el~~~i~~~  164 (256)
T 3iby_A          153 GIPALQQSLLHC  164 (256)
T ss_dssp             SHHHHHHHHHTC
T ss_pred             CHHHHHHHHHhh
Confidence            999999999886

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.95  E-value=8.5e-28  Score=171.34  Aligned_cols=156  Identities=15%  Similarity=0.165  Sum_probs=116.3

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhcc----------chh
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSL----------APM   78 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~----------~~~   78 (178)
                      +.++|+++|.+|+|||||+|+|++........+..+.+.....+...+.  .+.+||+||...+...          ...
T Consensus         2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~e~i~~~   79 (274)
T 3i8s_A            2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDH--QVTLVDLPGTYSLTTISSQTSLDEQIACH   79 (274)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSSC--EEEEEECCCCSCSCC----CCHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCCC--ceEEEECcCCCccccccccCCHHHHHHHH
Confidence            3689999999999999999999987754444455555555555555554  5679999998766521          222


Q ss_pred             h--hcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCC
Q 030364           79 Y--YRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKS  156 (178)
Q Consensus        79 ~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  156 (178)
                      +  ...+|++++|+|+++.+....+.   ..+...   +.|+++|+||+|+.+..... .....+++.++++++++||++
T Consensus        80 ~~~~~~~d~ii~VvD~~~~~~~~~~~---~~l~~~---~~p~ivv~NK~Dl~~~~~~~-~~~~~l~~~lg~~~i~~SA~~  152 (274)
T 3i8s_A           80 YILSGDADLLINVVDASNLERNLYLT---LQLLEL---GIPCIVALNMLDIAEKQNIR-IEIDALSARLGCPVIPLVSTR  152 (274)
T ss_dssp             HHHHTCCSEEEEEEEGGGHHHHHHHH---HHHHHH---TCCEEEEEECHHHHHHTTEE-ECHHHHHHHHTSCEEECCCGG
T ss_pred             HHhhcCCCEEEEEecCCChHHHHHHH---HHHHhc---CCCEEEEEECccchhhhhHH-HHHHHHHHhcCCCEEEEEcCC
Confidence            3  27899999999999866544433   333333   68999999999987654432 234667778899999999999


Q ss_pred             CCCHHHHHHHHHhhccc
Q 030364          157 AHNVNELFYEIGDCTEC  173 (178)
Q Consensus       157 ~~~i~~~~~~l~~~i~~  173 (178)
                      |.|+++++++|.+.+..
T Consensus       153 g~gi~el~~~i~~~~~~  169 (274)
T 3i8s_A          153 GRGIEALKLAIDRYKAN  169 (274)
T ss_dssp             GHHHHHHHHHHHTCCCC
T ss_pred             CCCHHHHHHHHHHHHhc
Confidence            99999999999988754

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=99.95  E-value=2e-27  Score=164.63  Aligned_cols=164  Identities=12%  Similarity=0.128  Sum_probs=110.2

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeC-CeEEEEEEEeCCCc----------hhhhcc
Q 030364            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLN-EVTIKFDIWDTAGQ----------ERYHSL   75 (178)
Q Consensus         7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~d~~g~----------~~~~~~   75 (178)
                      ....++|+|+|.+|+|||||+++|++...........+.+......... .....+.+|||||.          +.+...
T Consensus        26 ~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~  105 (223)
T 4dhe_A           26 PTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQL  105 (223)
T ss_dssp             CCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHH
T ss_pred             CCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHH
Confidence            3457899999999999999999999886322233333333333333333 33457789999994          444555


Q ss_pred             chhhhcC---CcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCH--HH-HHHHHHH-----
Q 030364           76 APMYYRG---AAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKN--EE-GELYAQE-----  144 (178)
Q Consensus        76 ~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~--~~-~~~~~~~-----  144 (178)
                      ...++..   +|++++|+|++++.+.. ...++..+..   .+.|+++|+||+|+........  .. ...+...     
T Consensus       106 ~~~~~~~~~~~d~vi~v~d~~~~~~~~-~~~~~~~l~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~  181 (223)
T 4dhe_A          106 LSSYLQTRPQLCGMILMMDARRPLTEL-DRRMIEWFAP---TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGY  181 (223)
T ss_dssp             HHHHHHHCTTEEEEEEEEETTSCCCHH-HHHHHHHHGG---GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHhcCcCcCEEEEEEeCCCCCCHH-HHHHHHHHHh---cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhccc
Confidence            5566655   78899999999753322 2233344433   4789999999999876443211  11 1222222     


Q ss_pred             -cCCeEEEEeCCCCCCHHHHHHHHHhhcccc
Q 030364          145 -NGLSFLETSAKSAHNVNELFYEIGDCTECF  174 (178)
Q Consensus       145 -~~~~~~~~Sa~~~~~i~~~~~~l~~~i~~~  174 (178)
                       .+++++++||++|.|+++++++|.+.+...
T Consensus       182 ~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~  212 (223)
T 4dhe_A          182 AGKLTVQLFSALKRTGLDDAHALIESWLRPA  212 (223)
T ss_dssp             CSCEEEEEEBTTTTBSHHHHHHHHHHHHC--
T ss_pred             CCCCeEEEeecCCCcCHHHHHHHHHHhcCcc
Confidence             567999999999999999999999987643

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.94  E-value=7.3e-27  Score=166.43  Aligned_cols=157  Identities=22%  Similarity=0.190  Sum_probs=119.6

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhc------cchhhh--
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHS------LAPMYY--   80 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~------~~~~~~--   80 (178)
                      +.++|+++|++|+|||||+++|++..+.....++.+.+.....+.+++.  .+.+||+||...+..      ....++  
T Consensus         2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~~~~~~~~~~~   79 (271)
T 3k53_A            2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREK--EFLVVDLPGIYSLTAHSIDELIARNFILD   79 (271)
T ss_dssp             CCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTE--EEEEEECCCCSCCCSSCHHHHHHHHHHHT
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCc--eEEEEeCCCccccccCCHHHHHHHHhhhc
Confidence            3689999999999999999999988764445555555665666666664  478999999876655      344555  


Q ss_pred             cCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCH
Q 030364           81 RGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNV  160 (178)
Q Consensus        81 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  160 (178)
                      ..+|++++|+|+++.+   ....++..+...  ...|+++++||+|+......... ...+.+.++++++++||++|.|+
T Consensus        80 ~~~d~vi~v~D~~~~~---~~~~~~~~~~~~--~~~p~ilv~NK~Dl~~~~~~~~~-~~~l~~~lg~~~~~~Sa~~g~gi  153 (271)
T 3k53_A           80 GNADVIVDIVDSTCLM---RNLFLTLELFEM--EVKNIILVLNKFDLLKKKGAKID-IKKMRKELGVPVIPTNAKKGEGV  153 (271)
T ss_dssp             TCCSEEEEEEEGGGHH---HHHHHHHHHHHT--TCCSEEEEEECHHHHHHHTCCCC-HHHHHHHHSSCEEECBGGGTBTH
T ss_pred             cCCcEEEEEecCCcch---hhHHHHHHHHhc--CCCCEEEEEEChhcCcccccHHH-HHHHHHHcCCcEEEEEeCCCCCH
Confidence            6899999999999853   223344444443  23899999999998765544433 66677888999999999999999


Q ss_pred             HHHHHHHHhhccc
Q 030364          161 NELFYEIGDCTEC  173 (178)
Q Consensus       161 ~~~~~~l~~~i~~  173 (178)
                      ++++++|.+.+..
T Consensus       154 ~~l~~~i~~~~~~  166 (271)
T 3k53_A          154 EELKRMIALMAEG  166 (271)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999987654

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.94  E-value=1.1e-26  Score=167.34  Aligned_cols=157  Identities=16%  Similarity=0.096  Sum_probs=108.8

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHHhCcCCC-CccCceeeeEEEEEEEeCCeEEEEEEEeCCCchh--------hhccchh
Q 030364            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFD-FQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER--------YHSLAPM   78 (178)
Q Consensus         8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~--------~~~~~~~   78 (178)
                      .+..+|+++|.+|+|||||+|+|++.++.. ...+.++..........+  ..++.+|||||...        +......
T Consensus         5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~--~~~l~l~DTpG~~~~~~~l~~~~~~~~~~   82 (301)
T 1wf3_A            5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEG--RRQIVFVDTPGLHKPMDALGEFMDQEVYE   82 (301)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET--TEEEEEEECCCCCCCCSHHHHHHHHHHHH
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeC--CcEEEEecCccccchhhHHHHHHHHHHHH
Confidence            456789999999999999999999887642 122222222222223333  46788999999765        4445567


Q ss_pred             hhcCCcEEEEEEECCCHhHHHHHHHHH-HHHHHhCCCCceEEEEEeCCCCccccc-cCHHHHHHHHHHcCCeEEEEeCCC
Q 030364           79 YYRGAAAAVVVYDITSMDSFERAKKWV-QELQRQGNPNLIMFLVANKVDLEEKRK-VKNEEGELYAQENGLSFLETSAKS  156 (178)
Q Consensus        79 ~~~~~d~~i~v~d~~~~~s~~~~~~~~-~~~~~~~~~~~~~ivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~Sa~~  156 (178)
                      +++.+|++++|+|++++.+..  ..|+ ..+... .++.|+++|+||+|+..... + .+....+  ....+++++||++
T Consensus        83 ~l~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~-~~~~p~ilV~NK~Dl~~~~~~~-~~~~~~~--~~~~~~~~iSA~~  156 (301)
T 1wf3_A           83 ALADVNAVVWVVDLRHPPTPE--DELVARALKPL-VGKVPILLVGNKLDAAKYPEEA-MKAYHEL--LPEAEPRMLSALD  156 (301)
T ss_dssp             HTSSCSEEEEEEETTSCCCHH--HHHHHHHHGGG-TTTSCEEEEEECGGGCSSHHHH-HHHHHHT--STTSEEEECCTTC
T ss_pred             HHhcCCEEEEEEECCCCCChH--HHHHHHHHHhh-cCCCCEEEEEECcccCCchHHH-HHHHHHh--cCcCcEEEEeCCC
Confidence            789999999999999764433  2333 344333 35789999999999865433 2 1122222  1235899999999


Q ss_pred             CCCHHHHHHHHHhhcc
Q 030364          157 AHNVNELFYEIGDCTE  172 (178)
Q Consensus       157 ~~~i~~~~~~l~~~i~  172 (178)
                      |.|+++++++|.+.+.
T Consensus       157 g~gv~~l~~~l~~~l~  172 (301)
T 1wf3_A          157 ERQVAELKADLLALMP  172 (301)
T ss_dssp             HHHHHHHHHHHHTTCC
T ss_pred             CCCHHHHHHHHHHhcc
Confidence            9999999999998764

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.94  E-value=1.4e-27  Score=164.93  Aligned_cols=144  Identities=17%  Similarity=0.200  Sum_probs=104.9

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHHhCcCCCC---ccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcC-
Q 030364            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDF---QESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG-   82 (178)
Q Consensus         7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~-   82 (178)
                      ..+.++|+++|++|+|||||+++|.+..+...   +.++.+..+         ..+.+.+||+||++.+...+..++.. 
T Consensus         9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~~~~~~~~   79 (218)
T 1nrj_B            9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKLSDYLKTR   79 (218)
T ss_dssp             -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG---------GGSSCEEEECCCCGGGTHHHHHHHHHH
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe---------eCceEEEEECCCcHHHHHHHHHHHHhc
Confidence            44689999999999999999999999876542   333333221         34567899999999998888888877 


Q ss_pred             ---CcEEEEEEECC-CHhHHHHHHHHHHHHHHh----CCCCceEEEEEeCCCCccccccC------HHHHHHHHHHcCCe
Q 030364           83 ---AAAAVVVYDIT-SMDSFERAKKWVQELQRQ----GNPNLIMFLVANKVDLEEKRKVK------NEEGELYAQENGLS  148 (178)
Q Consensus        83 ---~d~~i~v~d~~-~~~s~~~~~~~~~~~~~~----~~~~~~~ivv~nK~D~~~~~~~~------~~~~~~~~~~~~~~  148 (178)
                         +|++++|+|++ +++++..+..|+..+...    ...+.|+++|+||+|+.....+.      .++...++...+++
T Consensus        80 ~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~  159 (218)
T 1nrj_B           80 AKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKKS  159 (218)
T ss_dssp             GGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHhcc
Confidence               89999999999 888898888888777654    34689999999999997655433      34455666666678


Q ss_pred             EEEEeCCCCCC
Q 030364          149 FLETSAKSAHN  159 (178)
Q Consensus       149 ~~~~Sa~~~~~  159 (178)
                      ++++||++|.+
T Consensus       160 ~~~~Sa~~~~~  170 (218)
T 1nrj_B          160 LNEVERKINEE  170 (218)
T ss_dssp             HHC--------
T ss_pred             ccccccccccc
Confidence            88888887754

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.93  E-value=5.9e-26  Score=172.22  Aligned_cols=157  Identities=17%  Similarity=0.180  Sum_probs=99.6

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCcC-CCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccc--------hhh
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVKGQF-FDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLA--------PMY   79 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~--------~~~   79 (178)
                      ..++|+++|.+|+|||||+|+|.+... .....+.++.+.....+.+++  +.+.+|||||...+....        ..+
T Consensus       232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~~  309 (476)
T 3gee_A          232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMK  309 (476)
T ss_dssp             HCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT--EEEEEEC--------------------CC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHhh
Confidence            367899999999999999999998753 222334444455555566666  467899999987765433        346


Q ss_pred             hcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCC
Q 030364           80 YRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHN  159 (178)
Q Consensus        80 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  159 (178)
                      +..+|++++|+|++++.+++.+..+...+...  .+.|+++|+||+|+......   ....+.+....+++++||++|.|
T Consensus       310 ~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l--~~~piIvV~NK~Dl~~~~~~---~~~~l~~~~~~~~i~vSAktg~G  384 (476)
T 3gee_A          310 MAEADLILYLLDLGTERLDDELTEIRELKAAH--PAAKFLTVANKLDRAANADA---LIRAIADGTGTEVIGISALNGDG  384 (476)
T ss_dssp             CSSCSEEEEEEETTTCSSGGGHHHHHHHHHHC--TTSEEEEEEECTTSCTTTHH---HHHHHHHHHTSCEEECBTTTTBS
T ss_pred             cccCCEEEEEEECCCCcchhhhHHHHHHHHhc--CCCCEEEEEECcCCCCccch---hHHHHHhcCCCceEEEEECCCCC
Confidence            78999999999999987775433333333332  27899999999999765443   12334443347899999999999


Q ss_pred             HHHHHHHHHhhcc
Q 030364          160 VNELFYEIGDCTE  172 (178)
Q Consensus       160 i~~~~~~l~~~i~  172 (178)
                      +++++++|.+.+.
T Consensus       385 I~eL~~~i~~~~~  397 (476)
T 3gee_A          385 IDTLKQHMGDLVK  397 (476)
T ss_dssp             HHHHHHHHTHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999999876

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.93  E-value=7e-26  Score=171.02  Aligned_cols=161  Identities=20%  Similarity=0.159  Sum_probs=113.3

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHHhCcCC-CCccCceeeeEEEEEEEeCCeEEEEEEEeCCCc----------hhhhccc
Q 030364            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFF-DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ----------ERYHSLA   76 (178)
Q Consensus         8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~----------~~~~~~~   76 (178)
                      ...++|+++|.+|+|||||+|+|++.... ....+..+.+.....+..++.  .+.+|||||+          +.|....
T Consensus       173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~  250 (436)
T 2hjg_A          173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLR  250 (436)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTE--EEEETTHHHHTCBTTBCCCCSHHHHHH
T ss_pred             ccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCe--EEEEEECCCcCcCccccchHHHHHHHH
Confidence            35689999999999999999999987653 222333334444445566664  4779999997          4444433


Q ss_pred             h-hhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHH-HHH----HHHcCCeEE
Q 030364           77 P-MYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEG-ELY----AQENGLSFL  150 (178)
Q Consensus        77 ~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~-~~~----~~~~~~~~~  150 (178)
                      . .+++.+|++++|+|++++.++... .|+..+..   .+.|+++|+||+|+.+......++. ..+    ....+++++
T Consensus       251 ~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~---~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~  326 (436)
T 2hjg_A          251 ALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPIL  326 (436)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEE
T ss_pred             HHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH---cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEE
Confidence            3 477889999999999998777665 45555543   4789999999999976554332222 222    222468999


Q ss_pred             EEeCCCCCCHHHHHHHHHhhcccc
Q 030364          151 ETSAKSAHNVNELFYEIGDCTECF  174 (178)
Q Consensus       151 ~~Sa~~~~~i~~~~~~l~~~i~~~  174 (178)
                      ++||++|.|++++|+++.+.+...
T Consensus       327 ~~SA~tg~~v~~l~~~i~~~~~~~  350 (436)
T 2hjg_A          327 FMSALTKKRIHTLMPAIIKASENH  350 (436)
T ss_dssp             ECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred             EEecccCCCHHHHHHHHHHHHHHh
Confidence            999999999999999999877643

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.93  E-value=9.8e-25  Score=160.95  Aligned_cols=161  Identities=16%  Similarity=0.151  Sum_probs=118.0

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhc---------cchh
Q 030364            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHS---------LAPM   78 (178)
Q Consensus         8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~---------~~~~   78 (178)
                      ...++|+++|.+|+|||||+++|.+........+..+..........++  ..+.+|||||......         ....
T Consensus       165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~  242 (357)
T 2e87_A          165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGY--FRYQIIDTPGLLDRPISERNEIEKQAILA  242 (357)
T ss_dssp             SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETT--EEEEEEECTTTSSSCSTTSCHHHHHHHHG
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecC--ceEEEEeCCCccccchhhhhHHHHHHHHH
Confidence            4578999999999999999999998764322222222233333333343  5678999999743211         1123


Q ss_pred             hhcCCcEEEEEEECCCHh--HHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCC
Q 030364           79 YYRGAAAAVVVYDITSMD--SFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKS  156 (178)
Q Consensus        79 ~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  156 (178)
                      +...+|++++|+|++++.  +++....|+..+..... +.|+++|+||+|+.....+  ++...++...+++++++||++
T Consensus       243 ~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~iSA~~  319 (357)
T 2e87_A          243 LRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVADEENI--KRLEKFVKEKGLNPIKISALK  319 (357)
T ss_dssp             GGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTCCHHHH--HHHHHHHHHTTCCCEECBTTT
T ss_pred             HHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccCChHHH--HHHHHHHHhcCCCeEEEeCCC
Confidence            445699999999999876  67777788888776533 7899999999999765433  345556667889999999999


Q ss_pred             CCCHHHHHHHHHhhccc
Q 030364          157 AHNVNELFYEIGDCTEC  173 (178)
Q Consensus       157 ~~~i~~~~~~l~~~i~~  173 (178)
                      |+|+++++++|.+.+..
T Consensus       320 g~gi~~l~~~i~~~l~~  336 (357)
T 2e87_A          320 GTGIDLVKEEIIKTLRP  336 (357)
T ss_dssp             TBTHHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHHH
Confidence            99999999999988754

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.93  E-value=1.6e-25  Score=169.98  Aligned_cols=161  Identities=22%  Similarity=0.201  Sum_probs=115.4

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHHhCcC-CCCccCceeeeEEEEEEEeCCeEEEEEEEeCCC----------chhhhccc
Q 030364            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQF-FDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAG----------QERYHSLA   76 (178)
Q Consensus         8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g----------~~~~~~~~   76 (178)
                      ...++|+++|.+|+|||||+++|.+... .....+..+.+.....+..++.  .+.+|||||          ++.|....
T Consensus       193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~  270 (456)
T 4dcu_A          193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLR  270 (456)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTE--EEEETTGGGTTTBTTBCCCCSHHHHHH
T ss_pred             cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc--eEEEEECCCCCcCcccchHHHHHHHHH
Confidence            4578999999999999999999997642 2222333333333344555664  677999999          56666655


Q ss_pred             h-hhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHc-----CCeEE
Q 030364           77 P-MYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQEN-----GLSFL  150 (178)
Q Consensus        77 ~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~-----~~~~~  150 (178)
                      . .+++.+|++++|+|++++.. +....++..+..   .+.|+++|+||+|+.+.+....++....++..     +++++
T Consensus       271 ~~~~~~~ad~~llviD~~~~~~-~~~~~~~~~~~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (456)
T 4dcu_A          271 ALKAIDRSEVVAVVLDGEEGII-EQDKRIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPIL  346 (456)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCC-HHHHHHHHHHHH---TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEE
T ss_pred             HHHHHhhCCEEEEEEeCCCCcC-HHHHHHHHHHHH---cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEE
Confidence            4 47889999999999997543 222344444444   47899999999999876665555555555543     57999


Q ss_pred             EEeCCCCCCHHHHHHHHHhhcccc
Q 030364          151 ETSAKSAHNVNELFYEIGDCTECF  174 (178)
Q Consensus       151 ~~Sa~~~~~i~~~~~~l~~~i~~~  174 (178)
                      ++||++|.|++++|++|.+.+...
T Consensus       347 ~~SA~~g~gv~~l~~~i~~~~~~~  370 (456)
T 4dcu_A          347 FMSALTKKRIHTLMPAIIKASENH  370 (456)
T ss_dssp             ECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred             EEcCCCCcCHHHHHHHHHHHHHHh
Confidence            999999999999999999887654

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=99.93  E-value=9.6e-26  Score=165.21  Aligned_cols=125  Identities=20%  Similarity=0.274  Sum_probs=102.3

Q ss_pred             EEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEEEECCC----------HhHHHHHHHHHHHHHHhC-CCCceE
Q 030364           50 QVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITS----------MDSFERAKKWVQELQRQG-NPNLIM  118 (178)
Q Consensus        50 ~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~-~~~~~~  118 (178)
                      ..+.++  .+.+.+||++|++.++..|..++++++++|+|||+++          .++++....|+..+.... ..+.|+
T Consensus       186 ~~~~~~--~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~pi  263 (353)
T 1cip_A          186 THFTFK--DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSI  263 (353)
T ss_dssp             EEEEET--TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEE
T ss_pred             EEEeeC--CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcE
Confidence            334444  4788899999999999999999999999999999998          467888888888887643 368999


Q ss_pred             EEEEeCCCCcccc---------------ccCHHHHHHHHH-----------HcCCeEEEEeCCCCCCHHHHHHHHHhhcc
Q 030364          119 FLVANKVDLEEKR---------------KVKNEEGELYAQ-----------ENGLSFLETSAKSAHNVNELFYEIGDCTE  172 (178)
Q Consensus       119 ivv~nK~D~~~~~---------------~~~~~~~~~~~~-----------~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~  172 (178)
                      ++++||+|+....               .+..+++..++.           ..++.+++|||++|.||+++|+++.+.+.
T Consensus       264 iLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~  343 (353)
T 1cip_A          264 ILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVII  343 (353)
T ss_dssp             EEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred             EEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHH
Confidence            9999999985432               355677777776           35678999999999999999999998876


Q ss_pred             cccc
Q 030364          173 CFSL  176 (178)
Q Consensus       173 ~~~~  176 (178)
                      +..+
T Consensus       344 ~~~l  347 (353)
T 1cip_A          344 KNNL  347 (353)
T ss_dssp             HHC-
T ss_pred             HHHH
Confidence            5443

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=99.92  E-value=9.7e-25  Score=163.31  Aligned_cols=167  Identities=15%  Similarity=0.109  Sum_probs=118.0

Q ss_pred             CCCCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEE-------E---------Ee---CCeEEEEEEEe
Q 030364            5 SNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQV-------L---------SL---NEVTIKFDIWD   65 (178)
Q Consensus         5 ~~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~-------~---------~~---~~~~~~~~i~d   65 (178)
                      +..++.++|+++|++++|||||+++|++........ ....+.....       .         ..   ......+.+||
T Consensus         3 ~~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiD   81 (403)
T 3sjy_A            3 PKVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLG-YAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFID   81 (403)
T ss_dssp             CCCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSE-EEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEE
T ss_pred             CccCCCcEEEEECCCCCCHHHHHHHHhCcccccccC-ccccceeeccccccccceecccccccccccccccccceEEEEE
Confidence            445678999999999999999999999754322110 0000000000       0         00   11236889999


Q ss_pred             CCCchhhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCH--HHHHHHHH
Q 030364           66 TAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKN--EEGELYAQ  143 (178)
Q Consensus        66 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~--~~~~~~~~  143 (178)
                      +||++.|.......+..+|++++|+|++++.++.....++..+....  ..|+++++||+|+.+......  ++...+..
T Consensus        82 tPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~--~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~  159 (403)
T 3sjy_A           82 APGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG--VKNLIIVQNKVDVVSKEEALSQYRQIKQFTK  159 (403)
T ss_dssp             CCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHT--CCCEEEEEECGGGSCHHHHHHHHHHHHHHHT
T ss_pred             CCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcC--CCCEEEEEECccccchHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999998776777777777666553  257999999999876433211  12222222


Q ss_pred             H---cCCeEEEEeCCCCCCHHHHHHHHHhhcccc
Q 030364          144 E---NGLSFLETSAKSAHNVNELFYEIGDCTECF  174 (178)
Q Consensus       144 ~---~~~~~~~~Sa~~~~~i~~~~~~l~~~i~~~  174 (178)
                      .   .+++++++||++|.|+++++++|.+.+...
T Consensus       160 ~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~~  193 (403)
T 3sjy_A          160 GTWAENVPIIPVSALHKINIDSLIEGIEEYIKTP  193 (403)
T ss_dssp             TSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred             hhCCCCCEEEEEECCCCcChHHHHHHHHHhCCCC
Confidence            2   157999999999999999999999877543

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=99.92  E-value=1.2e-25  Score=164.20  Aligned_cols=159  Identities=19%  Similarity=0.180  Sum_probs=117.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchh----hhccchhhh---cCCc
Q 030364           12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER----YHSLAPMYY---RGAA   84 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~----~~~~~~~~~---~~~d   84 (178)
                      +|+++|.+|||||||+++|++........+..+.......+.+++ ...+.+||+||...    +..+...++   +.++
T Consensus       160 ~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~-~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d  238 (342)
T 1lnz_A          160 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDD-GRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTR  238 (342)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSS-SCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCC
T ss_pred             eeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCC-CceEEEecCCCCcccccccchhHHHHHHHHHhcc
Confidence            688999999999999999997654211122222222233344544 14678999999643    222334444   4599


Q ss_pred             EEEEEEECCC---HhHHHHHHHHHHHHHHhC--CCCceEEEEEeCCCCccccccCHHHHHHHHHHcC--CeEEEEeCCCC
Q 030364           85 AAVVVYDITS---MDSFERAKKWVQELQRQG--NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENG--LSFLETSAKSA  157 (178)
Q Consensus        85 ~~i~v~d~~~---~~s~~~~~~~~~~~~~~~--~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~  157 (178)
                      ++++|+|+++   +++++.+..|..++....  ..+.|+++|+||+|+....    +....+.+.+.  ++++++||+++
T Consensus       239 ~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~----e~~~~l~~~l~~~~~v~~iSA~tg  314 (342)
T 1lnz_A          239 VIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAA----ENLEAFKEKLTDDYPVFPISAVTR  314 (342)
T ss_dssp             EEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHH----HHHHHHHHHCCSCCCBCCCSSCCS
T ss_pred             EEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCH----HHHHHHHHHhhcCCCEEEEECCCC
Confidence            9999999998   788999998988888764  3589999999999986532    33455666665  78999999999


Q ss_pred             CCHHHHHHHHHhhccccc
Q 030364          158 HNVNELFYEIGDCTECFS  175 (178)
Q Consensus       158 ~~i~~~~~~l~~~i~~~~  175 (178)
                      .|+++++.+|.+.+...+
T Consensus       315 ~gi~eL~~~l~~~l~~~~  332 (342)
T 1lnz_A          315 EGLRELLFEVANQLENTP  332 (342)
T ss_dssp             STTHHHHHHHHHHHTSCC
T ss_pred             cCHHHHHHHHHHHHhhCc
Confidence            999999999999887654

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=99.92  E-value=3.3e-26  Score=171.10  Aligned_cols=156  Identities=17%  Similarity=0.190  Sum_probs=113.4

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHHhCcCC-CCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhcc-------chhh
Q 030364            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFF-DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSL-------APMY   79 (178)
Q Consensus         8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~-------~~~~   79 (178)
                      ...++|+++|.+|+|||||+++|++..+. ....+..+.+.....+.+.+. ..+.+|||||+..+...       ...+
T Consensus        32 ~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~-~~l~liDTpG~~d~~~l~~~~~~~~~~~  110 (423)
T 3qq5_A           32 GFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPI-GPVTLVDTPGLDDVGELGRLRVEKARRV  110 (423)
T ss_dssp             CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTT-EEEEEEECSSTTCCCTTCCCCHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCC-CeEEEEECcCCCcccchhHHHHHHHHHH
Confidence            45789999999999999999999987653 222333334444455555553 26789999999876654       2447


Q ss_pred             hcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCC
Q 030364           80 YRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHN  159 (178)
Q Consensus        80 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  159 (178)
                      +..+|++++|+|++..+   ....|+..+...   +.|+++|+||+|+......  +....+.+.++++++++||++|.|
T Consensus       111 l~~aD~vllVvD~~~~~---~~~~~l~~l~~~---~~piIvV~NK~Dl~~~~~~--~~~~~l~~~~g~~v~~vSAktg~g  182 (423)
T 3qq5_A          111 FYRADCGILVTDSAPTP---YEDDVVNLFKEM---EIPFVVVVNKIDVLGEKAE--ELKGLYESRYEAKVLLVSALQKKG  182 (423)
T ss_dssp             HTSCSEEEEECSSSCCH---HHHHHHHHHHHT---TCCEEEECCCCTTTTCCCT--HHHHHSSCCTTCCCCCCSSCCTTS
T ss_pred             HhcCCEEEEEEeCCChH---HHHHHHHHHHhc---CCCEEEEEeCcCCCCccHH--HHHHHHHHHcCCCEEEEECCCCCC
Confidence            88999999999994333   234556666554   7899999999999775544  555666667789999999999999


Q ss_pred             HHHHHHHHHhhcc
Q 030364          160 VNELFYEIGDCTE  172 (178)
Q Consensus       160 i~~~~~~l~~~i~  172 (178)
                      ++++|++|.+.+.
T Consensus       183 I~eL~~~L~~~l~  195 (423)
T 3qq5_A          183 FDDIGKTISEILP  195 (423)
T ss_dssp             TTTHHHHHHHHSC
T ss_pred             HHHHHHHHHHhhh
Confidence            9999999999884

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=99.92  E-value=1.6e-24  Score=158.70  Aligned_cols=118  Identities=17%  Similarity=0.202  Sum_probs=94.0

Q ss_pred             eEEEEEEEeCCCchhhhccchhhhcCCcEEEEEEECC----------CHhHHHHHHHHHHHHHHhC-CCCceEEEEEeCC
Q 030364           57 VTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDIT----------SMDSFERAKKWVQELQRQG-NPNLIMFLVANKV  125 (178)
Q Consensus        57 ~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~-~~~~~~ivv~nK~  125 (178)
                      ..+.+++||++|++.++..|..++++++++|+|||++          +.++++....|+..+.... .++.|+++++||+
T Consensus       181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~  260 (354)
T 2xtz_A          181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF  260 (354)
T ss_dssp             ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred             cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence            5789999999999999999999999999999999998          7889999999998887643 4689999999999


Q ss_pred             CCccccc--c-------------------CHHHHHHHHHH----------------cCCeEEEEeCCCCCCHHHHHHHHH
Q 030364          126 DLEEKRK--V-------------------KNEEGELYAQE----------------NGLSFLETSAKSAHNVNELFYEIG  168 (178)
Q Consensus       126 D~~~~~~--~-------------------~~~~~~~~~~~----------------~~~~~~~~Sa~~~~~i~~~~~~l~  168 (178)
                      |+...+.  +                   ..+++..++..                ..+.+++|||+++.||+++|+++.
T Consensus       261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~  340 (354)
T 2xtz_A          261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVD  340 (354)
T ss_dssp             HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHH
Confidence            9854322  1                   13455555332                234579999999999999999999


Q ss_pred             hhcccc
Q 030364          169 DCTECF  174 (178)
Q Consensus       169 ~~i~~~  174 (178)
                      +.+.+.
T Consensus       341 ~~I~~~  346 (354)
T 2xtz_A          341 ETLRRR  346 (354)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            877643

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=99.92  E-value=6.4e-24  Score=153.57  Aligned_cols=126  Identities=16%  Similarity=0.202  Sum_probs=101.5

Q ss_pred             EEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEEEECC----------CHhHHHHHHHHHHHHHHhC-CCCce
Q 030364           49 TQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDIT----------SMDSFERAKKWVQELQRQG-NPNLI  117 (178)
Q Consensus        49 ~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~-~~~~~  117 (178)
                      ...+..++  +.+++||++|++.++..|..++++++++|+|||++          +.++++....|+..+.... ..+.|
T Consensus       159 ~~~~~~~~--v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~  236 (327)
T 3ohm_A          159 EYPFDLQS--VIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSS  236 (327)
T ss_dssp             EEEEEETT--EEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCE
T ss_pred             EEEEEeec--eeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCce
Confidence            33344444  78899999999999999999999999999999665          6677888888888876543 36899


Q ss_pred             EEEEEeCCCCcccc----------------ccCHHHHHHHH----------HHcCCeEEEEeCCCCCCHHHHHHHHHhhc
Q 030364          118 MFLVANKVDLEEKR----------------KVKNEEGELYA----------QENGLSFLETSAKSAHNVNELFYEIGDCT  171 (178)
Q Consensus       118 ~ivv~nK~D~~~~~----------------~~~~~~~~~~~----------~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  171 (178)
                      +++++||+|+.+.+                ....+++..+.          ...++.+++|||+++.||+.+|+.+.+.|
T Consensus       237 iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~I  316 (327)
T 3ohm_A          237 VILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTI  316 (327)
T ss_dssp             EEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             EEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHHH
Confidence            99999999986544                45667777773          34567889999999999999999999988


Q ss_pred             ccccc
Q 030364          172 ECFSL  176 (178)
Q Consensus       172 ~~~~~  176 (178)
                      .+..+
T Consensus       317 l~~~l  321 (327)
T 3ohm_A          317 LQLNL  321 (327)
T ss_dssp             HHTTC
T ss_pred             HHHhH
Confidence            66544

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.92  E-value=2.7e-23  Score=155.73  Aligned_cols=161  Identities=17%  Similarity=0.175  Sum_probs=104.7

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHHhCc---CCCCccC--ceeeeEEEEEEEe-------------C--C----eEEEEE
Q 030364            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQ---FFDFQES--TIGAAFFTQVLSL-------------N--E----VTIKFD   62 (178)
Q Consensus         7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~---~~~~~~~--~~~~~~~~~~~~~-------------~--~----~~~~~~   62 (178)
                      +++.++|+++|+.++|||||+++|.+..   +..+..+  |....+.......             +  +    ....+.
T Consensus         5 r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~   84 (408)
T 1s0u_A            5 SQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVS   84 (408)
T ss_dssp             CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEE
T ss_pred             cCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEE
Confidence            4568999999999999999999998542   2222223  3322332222211             1  1    137899


Q ss_pred             EEeCCCchhhhccchhhhcCCcEEEEEEECCCH----hHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccc--CHH
Q 030364           63 IWDTAGQERYHSLAPMYYRGAAAAVVVYDITSM----DSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKV--KNE  136 (178)
Q Consensus        63 i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~--~~~  136 (178)
                      +||+||++.|...+...+..+|++++|+|++++    ++.+.+    ..+...  ...|+++++||+|+......  ..+
T Consensus        85 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l----~~~~~l--~~~~iivv~NK~Dl~~~~~~~~~~~  158 (408)
T 1s0u_A           85 FVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHL----MALEIL--GIDKIIIVQNKIDLVDEKQAEENYE  158 (408)
T ss_dssp             EEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHH----HHHHHT--TCCCEEEEEECTTSSCTTTTTTHHH
T ss_pred             EEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHH----HHHHHc--CCCeEEEEEEccCCCCHHHHHHHHH
Confidence            999999999988777778889999999999953    344433    223322  23479999999999765432  223


Q ss_pred             HHHHHHHH---cCCeEEEEeCCCCCCHHHHHHHHHhhccc
Q 030364          137 EGELYAQE---NGLSFLETSAKSAHNVNELFYEIGDCTEC  173 (178)
Q Consensus       137 ~~~~~~~~---~~~~~~~~Sa~~~~~i~~~~~~l~~~i~~  173 (178)
                      +...+.+.   .+++++++||++|.|+++++++|.+.+..
T Consensus       159 ~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~  198 (408)
T 1s0u_A          159 QIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIPT  198 (408)
T ss_dssp             HHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSCC
T ss_pred             HHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence            44555544   35799999999999999999999987754

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.91  E-value=8.4e-24  Score=159.82  Aligned_cols=150  Identities=19%  Similarity=0.175  Sum_probs=101.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCcCC-CCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchh---------hhccchhhh
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVKGQFF-DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER---------YHSLAPMYY   80 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~---------~~~~~~~~~   80 (178)
                      .+|+++|.||||||||+|+|++.... ....+..+.+.......+++.  .+.+|||||.+.         +......++
T Consensus         2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~   79 (439)
T 1mky_A            2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGK--TFKLVDTCGVFDNPQDIISQKMKEVTLNMI   79 (439)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTE--EEEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCe--EEEEEECCCccccccchHHHHHHHHHHHHH
Confidence            47999999999999999999987642 223344444444556666765  467999999653         234556788


Q ss_pred             cCCcEEEEEEECCCHhHHHH--HHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHH-HHHHHHcCC-eEEEEeCCC
Q 030364           81 RGAAAAVVVYDITSMDSFER--AKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEG-ELYAQENGL-SFLETSAKS  156 (178)
Q Consensus        81 ~~~d~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~-~~~~~~~~~-~~~~~Sa~~  156 (178)
                      +.+|++++|+|+.++.+...  +..|   +..   .++|+++|+||+|+....   .... ..+. .+++ +++++||++
T Consensus        80 ~~ad~il~V~D~~~~~~~~d~~i~~~---l~~---~~~p~ilv~NK~D~~~~~---~~~~~~~~~-~lg~~~~~~iSA~~  149 (439)
T 1mky_A           80 READLVLFVVDGKRGITKEDESLADF---LRK---STVDTILVANKAENLREF---EREVKPELY-SLGFGEPIPVSAEH  149 (439)
T ss_dssp             TTCSEEEEEEETTTCCCHHHHHHHHH---HHH---HTCCEEEEEESCCSHHHH---HHHTHHHHG-GGSSCSCEECBTTT
T ss_pred             HhCCEEEEEEECCCCCCHHHHHHHHH---HHH---cCCCEEEEEeCCCCcccc---HHHHHHHHH-hcCCCCEEEEeccC
Confidence            99999999999987544332  2222   222   268899999999986431   1222 3343 4566 789999999


Q ss_pred             CCCHHHHHHHHHhhcc
Q 030364          157 AHNVNELFYEIGDCTE  172 (178)
Q Consensus       157 ~~~i~~~~~~l~~~i~  172 (178)
                      |.|+++++++|.+.+.
T Consensus       150 g~gv~~L~~~i~~~l~  165 (439)
T 1mky_A          150 NINLDTMLETIIKKLE  165 (439)
T ss_dssp             TBSHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHhcc
Confidence            9999999999988764

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=99.91  E-value=4.3e-24  Score=154.03  Aligned_cols=158  Identities=14%  Similarity=0.112  Sum_probs=107.5

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHHhCcCCC-CccCceeeeEEEEEEEeCCeEEEEEEEeCCCch---------hhhccch
Q 030364            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFD-FQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE---------RYHSLAP   77 (178)
Q Consensus         8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~---------~~~~~~~   77 (178)
                      .+..+|+++|++|+|||||+|+|.+..+.. ...+..+..........++  ..+.+|||||..         .+.....
T Consensus         6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~--~~i~~iDTpG~~~~~~~~l~~~~~~~~~   83 (301)
T 1ega_A            6 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGA--YQAIYVDTPGLHMEEKRAINRLMNKAAS   83 (301)
T ss_dssp             CEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETT--EEEEEESSSSCCHHHHHHHHHHHTCCTT
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECC--eeEEEEECcCCCccchhhHHHHHHHHHH
Confidence            345689999999999999999999876531 1112111122222233333  578899999986         2334456


Q ss_pred             hhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCC-eEEEEeCCC
Q 030364           78 MYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGL-SFLETSAKS  156 (178)
Q Consensus        78 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~  156 (178)
                      .+++.+|++++|+|+++   +.....++.....  ..+.|+++++||+|+.............+.+.+++ .++++||++
T Consensus        84 ~~l~~~D~vl~Vvd~~~---~~~~~~~i~~~l~--~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~  158 (301)
T 1ega_A           84 SSIGDVELVIFVVEGTR---WTPDDEMVLNKLR--EGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAET  158 (301)
T ss_dssp             SCCCCEEEEEEEEETTC---CCHHHHHHHHHHH--SSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTT
T ss_pred             HHHhcCCEEEEEEeCCC---CCHHHHHHHHHHH--hcCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECCC
Confidence            67889999999999976   2222233322222  24789999999999875222223344555555665 799999999


Q ss_pred             CCCHHHHHHHHHhhcc
Q 030364          157 AHNVNELFYEIGDCTE  172 (178)
Q Consensus       157 ~~~i~~~~~~l~~~i~  172 (178)
                      |.|+++++++|.+.+.
T Consensus       159 g~~v~~l~~~i~~~l~  174 (301)
T 1ega_A          159 GLNVDTIAAIVRKHLP  174 (301)
T ss_dssp             TTTHHHHHHHHHTTCC
T ss_pred             CCCHHHHHHHHHHhCC
Confidence            9999999999998764

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=99.91  E-value=1.3e-23  Score=160.10  Aligned_cols=156  Identities=19%  Similarity=0.152  Sum_probs=109.5

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHHhCc-------CCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhh
Q 030364            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQ-------FFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYY   80 (178)
Q Consensus         8 ~~~~~i~v~G~~~~GKStl~~~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~   80 (178)
                      .+.++|+++|++++|||||+++|.+..       ...+..+..+.+.....+.+++  ..+.+||+||++.|.......+
T Consensus        17 m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~iiDtPGh~~~~~~~~~~~   94 (482)
T 1wb1_A           17 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVSAA   94 (482)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC--EEEEEEECCChHHHHHHHHHHH
Confidence            457899999999999999999999766       1222222222222222334444  5788999999999988888899


Q ss_pred             cCCcEEEEEEECCC---HhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccc--CHHHHHHHHHHc----CCeEEE
Q 030364           81 RGAAAAVVVYDITS---MDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKV--KNEEGELYAQEN----GLSFLE  151 (178)
Q Consensus        81 ~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~--~~~~~~~~~~~~----~~~~~~  151 (178)
                      ..+|++++|+|+++   +++.+.+    ..+..   .+.|.++++||+|+.++...  ..++...+....    ++++++
T Consensus        95 ~~aD~~ilVvda~~g~~~qt~e~l----~~~~~---~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~  167 (482)
T 1wb1_A           95 DIIDLALIVVDAKEGPKTQTGEHM----LILDH---FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIP  167 (482)
T ss_dssp             TSCCEEEEEEETTTCSCHHHHHHH----HHHHH---TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEE
T ss_pred             hhCCEEEEEEecCCCccHHHHHHH----HHHHH---cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEEE
Confidence            99999999999997   4444433    22332   36778999999999753221  123344445444    579999


Q ss_pred             EeCCCCCCHHHHHHHHHhhcc
Q 030364          152 TSAKSAHNVNELFYEIGDCTE  172 (178)
Q Consensus       152 ~Sa~~~~~i~~~~~~l~~~i~  172 (178)
                      +||++|.|+++++++|.+.+.
T Consensus       168 vSA~~g~gI~~L~~~L~~~i~  188 (482)
T 1wb1_A          168 ISAKTGFGVDELKNLIITTLN  188 (482)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHH
T ss_pred             EECcCCCCHHHHHHHHHHhhc
Confidence            999999999999999998664

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=99.91  E-value=2.4e-24  Score=163.53  Aligned_cols=152  Identities=22%  Similarity=0.229  Sum_probs=111.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCcCC-CCccCceeeeEEEEEEEeCCeEEEEEEEeCCCch-hhhc--------cchhh
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVKGQFF-DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE-RYHS--------LAPMY   79 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~-~~~~--------~~~~~   79 (178)
                      .++|+++|.||+|||||+|+|.+.... ....+.++.+.....+.+++  ..+.+|||||.. .+..        ....+
T Consensus       243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g--~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~  320 (482)
T 1xzp_A          243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQE  320 (482)
T ss_dssp             CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred             CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCC--eEEEEEECCCccccchhhHHHHHHHHHHHH
Confidence            489999999999999999999987532 22344444455555666666  457799999987 5442        12456


Q ss_pred             hcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCC
Q 030364           80 YRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHN  159 (178)
Q Consensus        80 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  159 (178)
                      ++.+|++++|+|++++.+++... ++..+     .+.|+++|+||+|+...  +..++...+.. .+++++++||++|.|
T Consensus       321 ~~~aD~vl~VvD~s~~~s~~~~~-il~~l-----~~~piivV~NK~DL~~~--~~~~~~~~~~~-~~~~~i~iSAktg~G  391 (482)
T 1xzp_A          321 IEKADIVLFVLDASSPLDEEDRK-ILERI-----KNKRYLVVINKVDVVEK--INEEEIKNKLG-TDRHMVKISALKGEG  391 (482)
T ss_dssp             HHHCSEEEEEEETTSCCCHHHHH-HHHHH-----TTSSEEEEEEECSSCCC--CCHHHHHHHHT-CSTTEEEEEGGGTCC
T ss_pred             hhcccEEEEEecCCCCCCHHHHH-HHHHh-----cCCCEEEEEECcccccc--cCHHHHHHHhc-CCCcEEEEECCCCCC
Confidence            88999999999999887765532 22222     37899999999999653  33334333332 457999999999999


Q ss_pred             HHHHHHHHHhhcc
Q 030364          160 VNELFYEIGDCTE  172 (178)
Q Consensus       160 i~~~~~~l~~~i~  172 (178)
                      +++++++|.+.+.
T Consensus       392 i~eL~~~l~~~~~  404 (482)
T 1xzp_A          392 LEKLEESIYRETQ  404 (482)
T ss_dssp             HHHHHHHHHHHTH
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999998754

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=99.91  E-value=1.5e-23  Score=157.27  Aligned_cols=163  Identities=18%  Similarity=0.202  Sum_probs=111.8

Q ss_pred             CCCCceeEEEEEcCCCCCHHHHHHHHHhCc---CCCCccC--ceeeeEEEEEEEe-------------C--C----eEEE
Q 030364            5 SNKNIQVKLVLLGDMGTGKTSLVLRFVKGQ---FFDFQES--TIGAAFFTQVLSL-------------N--E----VTIK   60 (178)
Q Consensus         5 ~~~~~~~~i~v~G~~~~GKStl~~~l~~~~---~~~~~~~--~~~~~~~~~~~~~-------------~--~----~~~~   60 (178)
                      ...++.++|+++|+.++|||||+++|.+..   +..+..+  |....+....+..             +  +    ....
T Consensus         5 ~~~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~   84 (410)
T 1kk1_A            5 KSRQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRR   84 (410)
T ss_dssp             -CCSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEE
T ss_pred             ccCCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccE
Confidence            345678999999999999999999998542   2222333  3322332222211             1  1    1368


Q ss_pred             EEEEeCCCchhhhccchhhhcCCcEEEEEEECCCH----hHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccc--C
Q 030364           61 FDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSM----DSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKV--K  134 (178)
Q Consensus        61 ~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~--~  134 (178)
                      +.+||+||++.|.......+..+|++++|+|++++    ++.+.+    ..+....  ..|+++++||+|+.+....  .
T Consensus        85 i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l----~~~~~~~--~~~iivviNK~Dl~~~~~~~~~  158 (410)
T 1kk1_A           85 VSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHL----MALQIIG--QKNIIIAQNKIELVDKEKALEN  158 (410)
T ss_dssp             EEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHH----HHHHHHT--CCCEEEEEECGGGSCHHHHHHH
T ss_pred             EEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHH----HHHHHcC--CCcEEEEEECccCCCHHHHHHH
Confidence            89999999999888777778889999999999964    334333    2333332  3578999999998764321  1


Q ss_pred             HHHHHHHHHH---cCCeEEEEeCCCCCCHHHHHHHHHhhccc
Q 030364          135 NEEGELYAQE---NGLSFLETSAKSAHNVNELFYEIGDCTEC  173 (178)
Q Consensus       135 ~~~~~~~~~~---~~~~~~~~Sa~~~~~i~~~~~~l~~~i~~  173 (178)
                      .++...+...   .+++++++||++|.|+++++++|.+.+..
T Consensus       159 ~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~  200 (410)
T 1kk1_A          159 YRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIPT  200 (410)
T ss_dssp             HHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence            2233444443   35799999999999999999999987654

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=99.91  E-value=1.9e-23  Score=162.03  Aligned_cols=160  Identities=18%  Similarity=0.176  Sum_probs=111.8

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCc--CCC-----Cc------cCceeeeEEEEE--EEe---CCeEEEEEEEeCCCch
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVKGQ--FFD-----FQ------ESTIGAAFFTQV--LSL---NEVTIKFDIWDTAGQE   70 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~~~--~~~-----~~------~~~~~~~~~~~~--~~~---~~~~~~~~i~d~~g~~   70 (178)
                      ...+|+++|+.++|||||+++|+...  ...     ..      +...+.+.....  +.+   ++..+.+.+|||||+.
T Consensus         3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~   82 (599)
T 3cb4_D            3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV   82 (599)
T ss_dssp             TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence            46799999999999999999998632  110     00      111222222222  222   4557899999999999


Q ss_pred             hhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCC---
Q 030364           71 RYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGL---  147 (178)
Q Consensus        71 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~---  147 (178)
                      +|...+..++..+|++|+|+|++++.+......|.....    .+.|+++++||+|+....  .......+.+.+++   
T Consensus        83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~----~~ipiIvViNKiDl~~a~--~~~v~~ei~~~lg~~~~  156 (599)
T 3cb4_D           83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME----MDLEVVPVLNKIDLPAAD--PERVAEEIEDIVGIDAT  156 (599)
T ss_dssp             GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH----TTCEEEEEEECTTSTTCC--HHHHHHHHHHHTCCCCT
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH----CCCCEEEeeeccCccccc--HHHHHHHHHHHhCCCcc
Confidence            999999999999999999999998776666666654442    368999999999997643  22334556666666   


Q ss_pred             eEEEEeCCCCCCHHHHHHHHHhhcccc
Q 030364          148 SFLETSAKSAHNVNELFYEIGDCTECF  174 (178)
Q Consensus       148 ~~~~~Sa~~~~~i~~~~~~l~~~i~~~  174 (178)
                      +++.+||++|.|+++++++|.+.+...
T Consensus       157 ~vi~vSAktg~GI~~Ll~~I~~~lp~p  183 (599)
T 3cb4_D          157 DAVRCSAKTGVGVQDVLERLVRDIPPP  183 (599)
T ss_dssp             TCEEECTTTCTTHHHHHHHHHHHSCCC
T ss_pred             eEEEeecccCCCchhHHHHHhhcCCCc
Confidence            499999999999999999999987654

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=99.91  E-value=1.2e-23  Score=154.65  Aligned_cols=118  Identities=14%  Similarity=0.183  Sum_probs=91.0

Q ss_pred             EEEEEEEeCCCchhhhccchhhhcCCcEEEEEEECCC----------HhHHHHHHHHHHHHHHhC-CCCceEEEEEeCCC
Q 030364           58 TIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITS----------MDSFERAKKWVQELQRQG-NPNLIMFLVANKVD  126 (178)
Q Consensus        58 ~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~-~~~~~~ivv~nK~D  126 (178)
                      .+.+.+||++|++.++..|..++++++++|+|+|+++          .+++.....|+..+.... ..+.|+++++||+|
T Consensus       200 ~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~D  279 (362)
T 1zcb_A          200 NVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTD  279 (362)
T ss_dssp             TEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHH
T ss_pred             CeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEEChh
Confidence            3778899999999999999999999999999999999          778999988888887643 46899999999999


Q ss_pred             Ccccc----------------ccCHHHHHHHH--------H---HcCCeEEEEeCCCCCCHHHHHHHHHhhccccc
Q 030364          127 LEEKR----------------KVKNEEGELYA--------Q---ENGLSFLETSAKSAHNVNELFYEIGDCTECFS  175 (178)
Q Consensus       127 ~~~~~----------------~~~~~~~~~~~--------~---~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~~~~  175 (178)
                      +....                .+..+++..++        +   ..++.+++|||+++.||+++|+++.+.+....
T Consensus       280 L~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i~~~~  355 (362)
T 1zcb_A          280 LLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHDN  355 (362)
T ss_dssp             HHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHHHHHH
Confidence            86432                25566666665        1   34678999999999999999999998876543

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=99.90  E-value=4.6e-23  Score=155.55  Aligned_cols=154  Identities=16%  Similarity=0.159  Sum_probs=102.7

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHHhCcC-------------------------------CCCccCceeeeEEEEEEEeC
Q 030364            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQF-------------------------------FDFQESTIGAAFFTQVLSLN   55 (178)
Q Consensus         7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~   55 (178)
                      ....++|+++|++++|||||+++|+....                               ..+..+..  +.......+.
T Consensus        14 ~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~Gi--Tid~~~~~~~   91 (439)
T 3j2k_7           14 KKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGK--TVEVGRAYFE   91 (439)
T ss_pred             CCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCc--eEEEeEEEEe
Confidence            34689999999999999999999965311                               11111222  3333333333


Q ss_pred             CeEEEEEEEeCCCchhhhccchhhhcCCcEEEEEEECCCHhH---HH---HHHHHHHHHHHhCCCCce-EEEEEeCCCCc
Q 030364           56 EVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDS---FE---RAKKWVQELQRQGNPNLI-MFLVANKVDLE  128 (178)
Q Consensus        56 ~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~-~ivv~nK~D~~  128 (178)
                      .....+.+||+||++.|...+...+..+|++++|+|++++..   ++   .....+..+..   .+.| +++++||+|+.
T Consensus        92 ~~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~---~~v~~iIvviNK~Dl~  168 (439)
T 3j2k_7           92 TEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT---AGVKHLIVLINKMDDP  168 (439)
T ss_pred             cCCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH---cCCCeEEEEeecCCCc
Confidence            334588899999999999999999999999999999998532   11   22222233322   2455 89999999985


Q ss_pred             ccc------ccCHHHHHHHHHHc------CCeEEEEeCCCCCCHHHHHH
Q 030364          129 EKR------KVKNEEGELYAQEN------GLSFLETSAKSAHNVNELFY  165 (178)
Q Consensus       129 ~~~------~~~~~~~~~~~~~~------~~~~~~~Sa~~~~~i~~~~~  165 (178)
                      ...      +...++...+.+..      +++++++||++|.|++++++
T Consensus       169 ~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~  217 (439)
T 3j2k_7          169 TVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD  217 (439)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence            321      11122333344443      35799999999999999654

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=99.90  E-value=4.1e-23  Score=152.12  Aligned_cols=162  Identities=18%  Similarity=0.090  Sum_probs=109.2

Q ss_pred             eeE-EEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCch---------hhhccchhh
Q 030364           10 QVK-LVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE---------RYHSLAPMY   79 (178)
Q Consensus        10 ~~~-i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~---------~~~~~~~~~   79 (178)
                      .++ |+++|.+|+|||||+|+|.+........+..+.+.....+.+++  ..+.+||++|..         .+.... ..
T Consensus       178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~tl-~~  254 (364)
T 2qtf_A          178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVTL-SE  254 (364)
T ss_dssp             -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHHH-HG
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHHH-HH
Confidence            344 99999999999999999998765333333334444556667777  356799999961         222222 24


Q ss_pred             hcCCcEEEEEEECCCHh--HHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccC-HHHHHHHHHHc---CCeEEEEe
Q 030364           80 YRGAAAAVVVYDITSMD--SFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVK-NEEGELYAQEN---GLSFLETS  153 (178)
Q Consensus        80 ~~~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~-~~~~~~~~~~~---~~~~~~~S  153 (178)
                      +..+|++++|+|++++.  ..+.+..+...+......+.|+++|+||+|+....... ......++...   +.+++++|
T Consensus       255 ~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~S  334 (364)
T 2qtf_A          255 AKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPIS  334 (364)
T ss_dssp             GGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEECB
T ss_pred             HHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEEE
Confidence            68899999999999876  56666666666666555688999999999986532100 11222233444   34789999


Q ss_pred             CCCCCCHHHHHHHHHhhcccc
Q 030364          154 AKSAHNVNELFYEIGDCTECF  174 (178)
Q Consensus       154 a~~~~~i~~~~~~l~~~i~~~  174 (178)
                      |++|.|+++++++|.+.+...
T Consensus       335 A~~g~gi~~L~~~I~~~l~~~  355 (364)
T 2qtf_A          335 ALKRTNLELLRDKIYQLATQL  355 (364)
T ss_dssp             TTTTBSHHHHHHHHHHHHHHH
T ss_pred             CCCCcCHHHHHHHHHHHhccc
Confidence            999999999999999877654

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=99.90  E-value=4.3e-23  Score=159.82  Aligned_cols=161  Identities=16%  Similarity=0.183  Sum_probs=114.3

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHHhCc--CCC-----Ccc------CceeeeEE--EEEEEe---CCeEEEEEEEeCCCc
Q 030364            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQ--FFD-----FQE------STIGAAFF--TQVLSL---NEVTIKFDIWDTAGQ   69 (178)
Q Consensus         8 ~~~~~i~v~G~~~~GKStl~~~l~~~~--~~~-----~~~------~~~~~~~~--~~~~~~---~~~~~~~~i~d~~g~   69 (178)
                      +...+|+++|+.++|||||+++|+...  ...     ...      ...+.+..  ...+.+   ++..+.+.+|||||+
T Consensus         4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh   83 (600)
T 2ywe_A            4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGH   83 (600)
T ss_dssp             GGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCS
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCc
Confidence            457899999999999999999998632  111     000      00111111  111112   455689999999999


Q ss_pred             hhhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCC--
Q 030364           70 ERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGL--  147 (178)
Q Consensus        70 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~--  147 (178)
                      .+|...+..++..+|++++|+|++++.+......|.....    .+.|+++++||+|+....  ......++.+..++  
T Consensus        84 ~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~----~~ipiIvviNKiDl~~a~--~~~v~~el~~~lg~~~  157 (600)
T 2ywe_A           84 VDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE----QDLVIIPVINKIDLPSAD--VDRVKKQIEEVLGLDP  157 (600)
T ss_dssp             GGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH----TTCEEEEEEECTTSTTCC--HHHHHHHHHHTSCCCG
T ss_pred             HhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH----CCCCEEEEEeccCccccC--HHHHHHHHHHhhCCCc
Confidence            9999988899999999999999999877766666654432    478999999999997643  12334455555666  


Q ss_pred             -eEEEEeCCCCCCHHHHHHHHHhhcccc
Q 030364          148 -SFLETSAKSAHNVNELFYEIGDCTECF  174 (178)
Q Consensus       148 -~~~~~Sa~~~~~i~~~~~~l~~~i~~~  174 (178)
                       +++.+||++|.|+++++++|.+.+...
T Consensus       158 ~~vi~vSAktg~GI~~Lle~I~~~lp~p  185 (600)
T 2ywe_A          158 EEAILASAKEGIGIEEILEAIVNRIPPP  185 (600)
T ss_dssp             GGCEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred             ccEEEEEeecCCCchHHHHHHHHhcccc
Confidence             499999999999999999999987654

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.90  E-value=2.3e-24  Score=162.75  Aligned_cols=154  Identities=16%  Similarity=0.141  Sum_probs=99.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCch--------hhhccchhhhc
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE--------RYHSLAPMYYR   81 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~--------~~~~~~~~~~~   81 (178)
                      ..+|+++|.+|+|||||+|+|.+..... ..++.+.+..............+.+|||||..        .+...+..+++
T Consensus         3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~-v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~   81 (436)
T 2hjg_A            3 KPVVAIVGRPNVGKSTIFNRIAGERISI-VEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMD   81 (436)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHEEEECC------------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCcee-ecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence            3689999999999999999999876532 34445554444444444334578899999985        56667778899


Q ss_pred             CCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCC-eEEEEeCCCCCCH
Q 030364           82 GAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGL-SFLETSAKSAHNV  160 (178)
Q Consensus        82 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i  160 (178)
                      .+|++++|+|+.++.+...  .++..+..  ..+.|+++|+||+|+.......    ..+. ..++ +++++||++|.|+
T Consensus        82 ~ad~il~vvD~~~~~~~~d--~~~~~~l~--~~~~pvilv~NK~D~~~~~~~~----~~~~-~lg~~~~~~iSA~~g~gv  152 (436)
T 2hjg_A           82 EADVIIFMVNGREGVTAAD--EEVAKILY--RTKKPVVLAVNKLDNTEMRANI----YDFY-SLGFGEPYPISGTHGLGL  152 (436)
T ss_dssp             HCSEEEEEEETTTCSCHHH--HHHHHHHT--TCCSCEEEEEECCCC-----CC----CSSG-GGSSCCCEECBTTTTBTH
T ss_pred             hCCEEEEEEeCCCCCCHHH--HHHHHHHH--HcCCCEEEEEECccCccchhhH----HHHH-HcCCCCeEEEeCcCCCCh
Confidence            9999999999998655443  22222222  3578999999999986532111    1122 2454 7899999999999


Q ss_pred             HHHHHHHHhhccc
Q 030364          161 NELFYEIGDCTEC  173 (178)
Q Consensus       161 ~~~~~~l~~~i~~  173 (178)
                      ++++++|.+.+..
T Consensus       153 ~~L~~~i~~~l~~  165 (436)
T 2hjg_A          153 GDLLDAVAEHFKN  165 (436)
T ss_dssp             HHHHHHHHHTGGG
T ss_pred             HHHHHHHHHhcCc
Confidence            9999999988753

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=99.90  E-value=3.5e-24  Score=162.02  Aligned_cols=154  Identities=18%  Similarity=0.174  Sum_probs=102.9

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCcCC-CCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccc--------hhh
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFF-DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLA--------PMY   79 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~--------~~~   79 (178)
                      ..++|+++|.+|+|||||+|+|.+.... ....+..+.+.....+.+++  ..+.+|||||...+....        ..+
T Consensus       223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~v~liDT~G~~~~~~~ve~~gi~~~~~~  300 (462)
T 3geh_A          223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGG--IPVQVLDTAGIRETSDQVEKIGVERSRQA  300 (462)
T ss_dssp             HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETT--EEEEECC--------------------CC
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECC--EEEEEEECCccccchhHHHHHHHHHHhhh
Confidence            3679999999999999999999986542 22334444444444455666  456799999986654332        235


Q ss_pred             hcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCC
Q 030364           80 YRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHN  159 (178)
Q Consensus        80 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  159 (178)
                      +..+|++++|+|++++.+... ..++..+     .+.|+++|+||+|+.........  ..+.  .+.+++++||++|.|
T Consensus       301 ~~~aD~vl~VvD~s~~~~~~~-~~i~~~l-----~~~piivV~NK~Dl~~~~~~~~~--~~~~--~~~~~i~iSAktg~G  370 (462)
T 3geh_A          301 ANTADLVLLTIDAATGWTTGD-QEIYEQV-----KHRPLILVMNKIDLVEKQLITSL--EYPE--NITQIVHTAAAQKQG  370 (462)
T ss_dssp             CCSCSEEEEEEETTTCSCHHH-HHHHHHH-----TTSCEEEEEECTTSSCGGGSTTC--CCCT--TCCCEEEEBTTTTBS
T ss_pred             hhcCCEEEEEeccCCCCCHHH-HHHHHhc-----cCCcEEEEEECCCCCcchhhHHH--HHhc--cCCcEEEEECCCCCC
Confidence            788999999999998765544 3344443     23699999999999765544311  1111  357899999999999


Q ss_pred             HHHHHHHHHhhcccc
Q 030364          160 VNELFYEIGDCTECF  174 (178)
Q Consensus       160 i~~~~~~l~~~i~~~  174 (178)
                      +++++++|.+.+...
T Consensus       371 i~eL~~~i~~~~~~~  385 (462)
T 3geh_A          371 IDSLETAILEIVQTG  385 (462)
T ss_dssp             HHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHhcc
Confidence            999999999987654

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=99.90  E-value=4.7e-24  Score=152.14  Aligned_cols=162  Identities=14%  Similarity=0.205  Sum_probs=93.6

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHHhCcCCCC-c-------cCceeeeEEEEEEEeCCeEEEEEEEeCCCchh-------
Q 030364            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDF-Q-------ESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER-------   71 (178)
Q Consensus         7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~-~-------~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~-------   71 (178)
                      +...++|+|+|.+|+|||||+|+|++...... +       .++.+.+.....+..++..+.+.+|||||...       
T Consensus         5 ~g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~   84 (274)
T 3t5d_A            5 SGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNC   84 (274)
T ss_dssp             --CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTT
T ss_pred             CccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhh
Confidence            34579999999999999999999887654332 2       44455555555555566667899999999732       


Q ss_pred             hhccc-------hhhhc-------------CCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccc
Q 030364           72 YHSLA-------PMYYR-------------GAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR  131 (178)
Q Consensus        72 ~~~~~-------~~~~~-------------~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~  131 (178)
                      +..+.       ..++.             .+|+++++++.+.......-..+++.+..    +.|+++|+||+|+....
T Consensus        85 ~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~----~~pvi~V~nK~D~~~~~  160 (274)
T 3t5d_A           85 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE----KVNIIPLIAKADTLTPE  160 (274)
T ss_dssp             THHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT----TSCEEEEESSGGGSCHH
T ss_pred             HHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc----cCCEEEEEeccCCCCHH
Confidence            22221       22222             27789999977752211111223333322    78999999999986543


Q ss_pred             ccCH--HHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHhhcc
Q 030364          132 KVKN--EEGELYAQENGLSFLETSAKSAHNVNELFYEIGDCTE  172 (178)
Q Consensus       132 ~~~~--~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~  172 (178)
                      +...  ..........+++++++|++++.|+++++++|.+.+.
T Consensus       161 e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~p  203 (274)
T 3t5d_A          161 ECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRLP  203 (274)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHTCS
T ss_pred             HHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCCC
Confidence            3322  2334445567899999999999999999999988653

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=99.90  E-value=2.7e-23  Score=145.42  Aligned_cols=163  Identities=17%  Similarity=0.190  Sum_probs=106.6

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccC--ceeeeEEEEEEEeCCeEEEEEEEeCCCc-----------hhhh
Q 030364            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQES--TIGAAFFTQVLSLNEVTIKFDIWDTAGQ-----------ERYH   73 (178)
Q Consensus         7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~d~~g~-----------~~~~   73 (178)
                      ....++|+++|.+|+|||||++++++..+.....+  +.+.........+++  ..+.+|||||.           ..+.
T Consensus        26 ~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~  103 (239)
T 3lxx_A           26 RNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKE--TELVVVDTPGIFDTEVPNAETSKEII  103 (239)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETT--EEEEEEECCSCC-----CHHHHHHHH
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCC--ceEEEEECCCccCCCCCHHHHHHHHH
Confidence            34579999999999999999999999887654444  333344444555666  45679999994           2344


Q ss_pred             ccchhhhcCCcEEEEEEECCCHhH--HHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccC------HHHHHHHHHHc
Q 030364           74 SLAPMYYRGAAAAVVVYDITSMDS--FERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVK------NEEGELYAQEN  145 (178)
Q Consensus        74 ~~~~~~~~~~d~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~------~~~~~~~~~~~  145 (178)
                      .....+++.+|++++|+|+++...  ...+..+...+...  ...|+++|+||+|+.....+.      .+....+.+..
T Consensus       104 ~~~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~--~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~  181 (239)
T 3lxx_A          104 RCILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGER--ARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIF  181 (239)
T ss_dssp             HHHHHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHH--HGGGEEEEEECGGGC------------CHHHHHHHHHH
T ss_pred             HHHHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhh--ccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHc
Confidence            444555678899999999875433  22222222222221  245899999999986654433      23566777788


Q ss_pred             CCeEEEEeCCCC-----CCHHHHHHHHHhhccc
Q 030364          146 GLSFLETSAKSA-----HNVNELFYEIGDCTEC  173 (178)
Q Consensus       146 ~~~~~~~Sa~~~-----~~i~~~~~~l~~~i~~  173 (178)
                      +..++.+++..+     .++.+++..+.+.+..
T Consensus       182 ~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~  214 (239)
T 3lxx_A          182 GDRYCALNNKATGAEQEAQRAQLLGLIQRVVRE  214 (239)
T ss_dssp             SSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence            888888877654     6899999988777643

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=99.90  E-value=2.5e-23  Score=147.33  Aligned_cols=162  Identities=18%  Similarity=0.177  Sum_probs=104.6

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHHhCc-CCCCccCc-eeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccc---------
Q 030364            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQ-FFDFQEST-IGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLA---------   76 (178)
Q Consensus         8 ~~~~~i~v~G~~~~GKStl~~~l~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~---------   76 (178)
                      .+.++|+|+|.+|+|||||++++++.. +.....++ .+..........++  ..+.+|||||...+....         
T Consensus        20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~iiDTpG~~~~~~~~~~~~~~i~~   97 (260)
T 2xtp_A           20 RSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN--REIVIIDTPDMFSWKDHCEALYKEVQR   97 (260)
T ss_dssp             -CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT--EEEEEEECCGGGGSSCCCHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC--CEEEEEECcCCCCCCCCHHHHHHHHHH
Confidence            457899999999999999999999877 33333333 33334444455555  467799999986553322         


Q ss_pred             --hhhhcCCcEEEEEEECCCHhHH-HHHHHHHHHHHHhCCCCceEEEEEe-CCCCccccccCH-------HHHHHHHHHc
Q 030364           77 --PMYYRGAAAAVVVYDITSMDSF-ERAKKWVQELQRQGNPNLIMFLVAN-KVDLEEKRKVKN-------EEGELYAQEN  145 (178)
Q Consensus        77 --~~~~~~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~~~ivv~n-K~D~~~~~~~~~-------~~~~~~~~~~  145 (178)
                        ..+++.+|++++|+|+++.... ..+..++..+... ....|.++++| |+|+... ....       .+...+....
T Consensus        98 ~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~-~~~~~~i~vv~nK~Dl~~~-~~~~~i~~~~~~~~~~~~~~~  175 (260)
T 2xtp_A           98 CYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGE-DAMGHTIVLFTHKEDLNGG-SLMDYMHDSDNKALSKLVAAC  175 (260)
T ss_dssp             HHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCG-GGGGGEEEEEECGGGGTTC-CHHHHHHHCCCHHHHHHHHHT
T ss_pred             HHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCc-hhhccEEEEEEcccccCCc-cHHHHHHhcchHHHHHHHHHh
Confidence              2267889999999999862221 1222333332211 11346666666 9998743 2111       2233355555


Q ss_pred             CCe---E--EEEeCCCCCCHHHHHHHHHhhccc
Q 030364          146 GLS---F--LETSAKSAHNVNELFYEIGDCTEC  173 (178)
Q Consensus       146 ~~~---~--~~~Sa~~~~~i~~~~~~l~~~i~~  173 (178)
                      +..   +  +++||++|.|++++|++|.+.+..
T Consensus       176 ~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~  208 (260)
T 2xtp_A          176 GGRICAFNNRAEGSNQDDQVKELMDCIEDLLME  208 (260)
T ss_dssp             TTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCeEEEecCcccccccHHHHHHHHHHHHHHHHh
Confidence            432   2  789999999999999999987764

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=99.90  E-value=2.3e-23  Score=159.05  Aligned_cols=153  Identities=18%  Similarity=0.167  Sum_probs=98.0

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHHhCcC--CCC---------------------------ccCceeeeEEEEEEEeCCeE
Q 030364            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQF--FDF---------------------------QESTIGAAFFTQVLSLNEVT   58 (178)
Q Consensus         8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~--~~~---------------------------~~~~~~~~~~~~~~~~~~~~   58 (178)
                      .+.+||+++|.+++|||||+++|++...  ...                           .....+.+.......+....
T Consensus        31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~  110 (483)
T 3p26_A           31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR  110 (483)
T ss_dssp             CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCC
Confidence            4579999999999999999999976511  000                           00111222222222333344


Q ss_pred             EEEEEEeCCCchhhhccchhhhcCCcEEEEEEECCCHhHHHH------HHHHHHHHHHhCCCCceEEEEEeCCCCccccc
Q 030364           59 IKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFER------AKKWVQELQRQGNPNLIMFLVANKVDLEEKRK  132 (178)
Q Consensus        59 ~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~------~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~  132 (178)
                      +.+.|||+||++.|......++..+|++++|+|++++.++..      ....+......  ...|++||+||+|+.+..+
T Consensus       111 ~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~--~~~~iIvviNK~Dl~~~~~  188 (483)
T 3p26_A          111 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL--GIHNLIIAMNKMDNVDWSQ  188 (483)
T ss_dssp             CEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT--TCCCEEEEEECGGGGTTCH
T ss_pred             ceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc--CCCcEEEEEECcCcccchH
Confidence            678899999999999999999999999999999998754322      22222222222  2346999999999876332


Q ss_pred             cCHHH----HHHHHHHc-----CCeEEEEeCCCCCCHHH
Q 030364          133 VKNEE----GELYAQEN-----GLSFLETSAKSAHNVNE  162 (178)
Q Consensus       133 ~~~~~----~~~~~~~~-----~~~~~~~Sa~~~~~i~~  162 (178)
                      ...++    ...+....     +++++++||++|.|+++
T Consensus       189 ~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e  227 (483)
T 3p26_A          189 QRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK  227 (483)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred             HHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence            22222    22233222     46899999999999975

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.90  E-value=7.5e-23  Score=154.63  Aligned_cols=160  Identities=18%  Similarity=0.146  Sum_probs=105.4

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCcCC-CCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccc-----------
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFF-DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLA-----------   76 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~-----------   76 (178)
                      ..++|+++|++|||||||+|++.+.... ....+..+.+.....+.+++.  .+.+||++|........           
T Consensus       179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~~  256 (439)
T 1mky_A          179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNYR  256 (439)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCHH
T ss_pred             cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE--EEEEEECCCCccccccchhhHHHHHHHH
Confidence            4689999999999999999999987542 112233333333445566775  46799999974332211           


Q ss_pred             -hhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHH-----HHHHHHcCCeEE
Q 030364           77 -PMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEG-----ELYAQENGLSFL  150 (178)
Q Consensus        77 -~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~-----~~~~~~~~~~~~  150 (178)
                       ..++..+|++++++|++++.+.... .+...+..   .+.|+++++||+|+.+......++.     ..+....+++++
T Consensus       257 ~~~~i~~ad~vllv~d~~~~~~~~~~-~i~~~l~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (439)
T 1mky_A          257 VVDSIEKADVVVIVLDATQGITRQDQ-RMAGLMER---RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLI  332 (439)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEE
T ss_pred             HHHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEE
Confidence             2356789999999999976555432 22232322   4789999999999876444333222     222223457999


Q ss_pred             EEeCCCCCCHHHHHHHHHhhcccc
Q 030364          151 ETSAKSAHNVNELFYEIGDCTECF  174 (178)
Q Consensus       151 ~~Sa~~~~~i~~~~~~l~~~i~~~  174 (178)
                      ++||++|.|++++|+.+.+.+...
T Consensus       333 ~~SA~~g~gv~~l~~~i~~~~~~~  356 (439)
T 1mky_A          333 FTSADKGWNIDRMIDAMNLAYASY  356 (439)
T ss_dssp             ECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHHHHHHhh
Confidence            999999999999999998876654

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=99.89  E-value=2e-25  Score=170.86  Aligned_cols=160  Identities=18%  Similarity=0.189  Sum_probs=112.8

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEE
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVV   88 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~   88 (178)
                      +..+|+++|++++|||||+++|.+..+.....++.+.+.....+..++ ...+.||||||++.|..++..++..+|++++
T Consensus         3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~-g~~i~~iDTPGhe~f~~~~~~~~~~aD~vIL   81 (537)
T 3izy_P            3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPS-GEKITFLDTPGHAAFSAMRARGTQVTDIVIL   81 (537)
T ss_dssp             CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSC-SSCCBCEECSSSCCTTTSBBSSSBSBSSCEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCC-CCEEEEEECCChHHHHHHHHHHHccCCEEEE
Confidence            467899999999999999999998765544444444333333333322 2367799999999999999999999999999


Q ss_pred             EEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccC-HHHHHHH---HHHc--CCeEEEEeCCCCCCHHH
Q 030364           89 VYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVK-NEEGELY---AQEN--GLSFLETSAKSAHNVNE  162 (178)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~-~~~~~~~---~~~~--~~~~~~~Sa~~~~~i~~  162 (178)
                      |+|++++....... .+..+.   ..+.|+++++||+|+.+..... ..+...+   +..+  .++++++||++|.|+++
T Consensus        82 VVDa~dg~~~qt~e-~l~~~~---~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~e  157 (537)
T 3izy_P           82 VVAADDGVMKQTVE-SIQHAK---DAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMMA  157 (537)
T ss_dssp             ECBSSSCCCHHHHH-HHHHHH---TTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSHH
T ss_pred             EEECCCCccHHHHH-HHHHHH---HcCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCchh
Confidence            99999865443332 223332   3478999999999986533211 1111111   1111  35899999999999999


Q ss_pred             HHHHHHhhccc
Q 030364          163 LFYEIGDCTEC  173 (178)
Q Consensus       163 ~~~~l~~~i~~  173 (178)
                      ++++|...+..
T Consensus       158 Lle~I~~l~~~  168 (537)
T 3izy_P          158 LAEATIALAEM  168 (537)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHHHHhhhc
Confidence            99999987653

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=99.89  E-value=1.6e-23  Score=141.88  Aligned_cols=117  Identities=16%  Similarity=0.212  Sum_probs=89.0

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHHhCcCCCC---ccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcC-
Q 030364            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDF---QESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG-   82 (178)
Q Consensus         7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~-   82 (178)
                      ..+.++|+++|++|+|||||++++.+..+...   ..++.+.         +...+.+.+||+||...+...+..++.. 
T Consensus        45 ~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~---------~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~  115 (193)
T 2ged_A           45 GSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAA---------DYDGSGVTLVDFPGHVKLRYKLSDYLKTR  115 (193)
T ss_dssp             -CCCCEEEEECCTTSSHHHHHHHHHHSSCC---------------------CCCCTTCSEEEETTCCBSSCCHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceee---------eecCCeEEEEECCCCchHHHHHHHHHHhh
Confidence            35678999999999999999999998875431   1222211         1134567899999998888877777766 


Q ss_pred             ---CcEEEEEEECC-CHhHHHHHHHHHHHHHHh----CCCCceEEEEEeCCCCccccc
Q 030364           83 ---AAAAVVVYDIT-SMDSFERAKKWVQELQRQ----GNPNLIMFLVANKVDLEEKRK  132 (178)
Q Consensus        83 ---~d~~i~v~d~~-~~~s~~~~~~~~~~~~~~----~~~~~~~ivv~nK~D~~~~~~  132 (178)
                         +|++++|+|++ +++++..+..|+..+...    ..++.|+++|+||+|+.+...
T Consensus       116 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~  173 (193)
T 2ged_A          116 AKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARP  173 (193)
T ss_dssp             GGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCC
T ss_pred             cccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCC
Confidence               89999999999 899999988888776553    346899999999999976544

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=99.89  E-value=5.3e-23  Score=153.59  Aligned_cols=161  Identities=16%  Similarity=0.150  Sum_probs=110.7

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCc-------CCCC-------ccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhc
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVKGQ-------FFDF-------QESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHS   74 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~~~-------~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~   74 (178)
                      +.+||+++|++++|||||+++|.+..       +...       .+...+.+.......+......+.+||+||++.|..
T Consensus         2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~   81 (397)
T 1d2e_A            2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK   81 (397)
T ss_dssp             CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred             CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence            47899999999999999999998741       1100       001122233333334444446788999999999988


Q ss_pred             cchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCce-EEEEEeCCCCccccc---cCHHHHHHHHHHcC----
Q 030364           75 LAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLI-MFLVANKVDLEEKRK---VKNEEGELYAQENG----  146 (178)
Q Consensus        75 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-~ivv~nK~D~~~~~~---~~~~~~~~~~~~~~----  146 (178)
                      ....++..+|++|+|+|++++..... ..++..+..   .+.| +++++||+|+.+..+   ...++...+.+..+    
T Consensus        82 ~~~~~~~~aD~~ilVvda~~g~~~qt-~e~l~~~~~---~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~  157 (397)
T 1d2e_A           82 NMITGTAPLDGCILVVAANDGPMPQT-REHLLLARQ---IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGE  157 (397)
T ss_dssp             HHHHTSSCCSEEEEEEETTTCSCHHH-HHHHHHHHH---TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred             HHHhhHhhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCcc
Confidence            88888999999999999998543332 233333433   2677 689999999864221   11234455666555    


Q ss_pred             -CeEEEEeCCCCCC----------HHHHHHHHHhhccc
Q 030364          147 -LSFLETSAKSAHN----------VNELFYEIGDCTEC  173 (178)
Q Consensus       147 -~~~~~~Sa~~~~~----------i~~~~~~l~~~i~~  173 (178)
                       ++++++||++|.|          +++++++|.+.+..
T Consensus       158 ~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~  195 (397)
T 1d2e_A          158 ETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPV  195 (397)
T ss_dssp             TSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCC
T ss_pred             cCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCCC
Confidence             6899999999764          89999999886653

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=99.89  E-value=4.6e-23  Score=149.62  Aligned_cols=116  Identities=17%  Similarity=0.241  Sum_probs=93.9

Q ss_pred             EEEEEEEeCCCchhhhccchhhhcCCcEEEEEEECC----------CHhHHHHHHHHHHHHHHhC-CCCceEEEEEeCCC
Q 030364           58 TIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDIT----------SMDSFERAKKWVQELQRQG-NPNLIMFLVANKVD  126 (178)
Q Consensus        58 ~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~-~~~~~~ivv~nK~D  126 (178)
                      .+.+++||++|++.++..|..++++++++|+|||++          +.+++.....|+..+.... ..+.|+++++||+|
T Consensus       160 ~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~D  239 (340)
T 4fid_A          160 DIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKMD  239 (340)
T ss_dssp             SCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECHH
T ss_pred             eeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEECch
Confidence            478899999999999999999999999999999998          6788998888888877653 47899999999999


Q ss_pred             Cccccc---------------cCHHHHHHHHHH---------------------------cCCeEEEEeCCCCCCHHHHH
Q 030364          127 LEEKRK---------------VKNEEGELYAQE---------------------------NGLSFLETSAKSAHNVNELF  164 (178)
Q Consensus       127 ~~~~~~---------------~~~~~~~~~~~~---------------------------~~~~~~~~Sa~~~~~i~~~~  164 (178)
                      +...+.               ...+++..++..                           ..+.+++|||+++.+|+.+|
T Consensus       240 L~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~vF  319 (340)
T 4fid_A          240 LFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKRVF  319 (340)
T ss_dssp             HHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHHHHH
T ss_pred             hhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHHHHH
Confidence            854211               134444443322                           24778999999999999999


Q ss_pred             HHHHhhccc
Q 030364          165 YEIGDCTEC  173 (178)
Q Consensus       165 ~~l~~~i~~  173 (178)
                      +.+.+.|-+
T Consensus       320 ~~v~~~Il~  328 (340)
T 4fid_A          320 MLAVDVIMK  328 (340)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999887754

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=99.89  E-value=2.3e-23  Score=156.00  Aligned_cols=163  Identities=16%  Similarity=0.185  Sum_probs=112.5

Q ss_pred             CCCceeEEEEEcCCCCCHHHHHHHHHhC--------cCCCC-------ccCceeeeEEEEEEEeCCeEEEEEEEeCCCch
Q 030364            6 NKNIQVKLVLLGDMGTGKTSLVLRFVKG--------QFFDF-------QESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE   70 (178)
Q Consensus         6 ~~~~~~~i~v~G~~~~GKStl~~~l~~~--------~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~   70 (178)
                      ...+.++|+++|++++|||||+++|.+.        .+...       .+...+.+.......++.....+.+||+||++
T Consensus         7 ~~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~   86 (405)
T 2c78_A            7 RTKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHA   86 (405)
T ss_dssp             --CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSG
T ss_pred             CCCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChH
Confidence            3456899999999999999999999873        11110       00122222222333444444677899999999


Q ss_pred             hhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCce-EEEEEeCCCCcccccc---CHHHHHHHHHHcC
Q 030364           71 RYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLI-MFLVANKVDLEEKRKV---KNEEGELYAQENG  146 (178)
Q Consensus        71 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-~ivv~nK~D~~~~~~~---~~~~~~~~~~~~~  146 (178)
                      .|......++..+|++|+|+|++++.. .....++..+...   +.| +++++||+|+....+.   ...+...+....+
T Consensus        87 ~f~~~~~~~~~~aD~~ilVvda~~g~~-~qt~~~l~~~~~~---~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~  162 (405)
T 2c78_A           87 DYIKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQV---GVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYE  162 (405)
T ss_dssp             GGHHHHHHHHTTCSSEEEEEETTTCCC-HHHHHHHHHHHHT---TCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhc
Confidence            998888889999999999999998643 3334555555443   567 8899999998742211   1223445555554


Q ss_pred             -----CeEEEEeCCCCCC------------------HHHHHHHHHhhcc
Q 030364          147 -----LSFLETSAKSAHN------------------VNELFYEIGDCTE  172 (178)
Q Consensus       147 -----~~~~~~Sa~~~~~------------------i~~~~~~l~~~i~  172 (178)
                           ++++++||++|.|                  +++++++|.+.+.
T Consensus       163 ~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp  211 (405)
T 2c78_A          163 FPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIP  211 (405)
T ss_dssp             SCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSC
T ss_pred             ccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcC
Confidence                 6899999999987                  8888888887664

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.89  E-value=5.3e-23  Score=155.24  Aligned_cols=153  Identities=18%  Similarity=0.199  Sum_probs=102.2

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHHhCcC--CCCc----------cCce-------------------eeeEEEEEEEeCC
Q 030364            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQF--FDFQ----------ESTI-------------------GAAFFTQVLSLNE   56 (178)
Q Consensus         8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~--~~~~----------~~~~-------------------~~~~~~~~~~~~~   56 (178)
                      ...++|+++|++++|||||+++|+++..  ....          ..+.                   +.+.......+..
T Consensus        22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~  101 (434)
T 1zun_B           22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST  101 (434)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred             CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence            4579999999999999999999986541  1100          0110                   1111111122233


Q ss_pred             eEEEEEEEeCCCchhhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccc--c-
Q 030364           57 VTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRK--V-  133 (178)
Q Consensus        57 ~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~--~-  133 (178)
                      ....+.+||+||++.|...+..++..+|++++|+|++++.. .....++..+...  ...|+++++||+|+.+..+  . 
T Consensus       102 ~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~-~qt~~~l~~~~~~--~~~~iIvviNK~Dl~~~~~~~~~  178 (434)
T 1zun_B          102 AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQ-TQTRRHSYIASLL--GIKHIVVAINKMDLNGFDERVFE  178 (434)
T ss_dssp             SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSC-HHHHHHHHHHHHT--TCCEEEEEEECTTTTTSCHHHHH
T ss_pred             CCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc--CCCeEEEEEEcCcCCcccHHHHH
Confidence            34678899999999998888888999999999999998542 2233444444333  2236899999999975221  1 


Q ss_pred             -CHHHHHHHHHHcC-----CeEEEEeCCCCCCHHHH
Q 030364          134 -KNEEGELYAQENG-----LSFLETSAKSAHNVNEL  163 (178)
Q Consensus       134 -~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~~  163 (178)
                       ..++...+++..+     ++++++||++|.|++++
T Consensus       179 ~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~  214 (434)
T 1zun_B          179 SIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNK  214 (434)
T ss_dssp             HHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSC
T ss_pred             HHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccc
Confidence             1234455666666     68999999999999874

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.89  E-value=9e-24  Score=155.76  Aligned_cols=159  Identities=13%  Similarity=0.210  Sum_probs=87.0

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHHhCcCC-CCcc--------CceeeeEEEEEEEeCCeEEEEEEEeCCCc-------hh
Q 030364            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFF-DFQE--------STIGAAFFTQVLSLNEVTIKFDIWDTAGQ-------ER   71 (178)
Q Consensus         8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~-~~~~--------~~~~~~~~~~~~~~~~~~~~~~i~d~~g~-------~~   71 (178)
                      ...++|+|+|++|+|||||+++|++.... ..+.        ++.+..........++..+.+.+||+||.       +.
T Consensus        35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~  114 (361)
T 2qag_A           35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC  114 (361)
T ss_dssp             CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred             CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHH
Confidence            34689999999999999999998765432 2221        33333333333444566778999999998       55


Q ss_pred             hhccch-------hhhcCCc-------------EEEEEEECCCHhHHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCccc
Q 030364           72 YHSLAP-------MYYRGAA-------------AAVVVYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEEK  130 (178)
Q Consensus        72 ~~~~~~-------~~~~~~d-------------~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~ivv~nK~D~~~~  130 (178)
                      +..+..       .++..++             +++++++.+ ..++..+. .++..+    ..+.|+++|+||+|+...
T Consensus       115 ~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~-~~~l~~~d~~~~~~l----~~~~piIlV~NK~Dl~~~  189 (361)
T 2qag_A          115 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLDVAFMKAI----HNKVNIVPVIAKADTLTL  189 (361)
T ss_dssp             -CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS-SSSCCHHHHHHHHHT----CS-SCEEEEEECCSSSCH
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC-CCCcchhHHHHHHHh----ccCCCEEEEEECCCCCCH
Confidence            555554       4444333             344444432 33444443 232322    367899999999999776


Q ss_pred             cccCH--HHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHhhcc
Q 030364          131 RKVKN--EEGELYAQENGLSFLETSAKSAHNVNELFYEIGDCTE  172 (178)
Q Consensus       131 ~~~~~--~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~  172 (178)
                      .++..  .....++..++++++++||++|.+ ++.|.++.+.+.
T Consensus       190 ~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~  232 (361)
T 2qag_A          190 KERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLK  232 (361)
T ss_dssp             HHHHHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHH
Confidence            55543  456666777889999999999998 777777766553

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=99.88  E-value=4.6e-22  Score=147.35  Aligned_cols=116  Identities=16%  Similarity=0.208  Sum_probs=95.4

Q ss_pred             EEEEEEeCCCchhhhccchhhhcCCcEEEEEEECCC----------HhHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCC
Q 030364           59 IKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITS----------MDSFERAKKWVQELQRQG-NPNLIMFLVANKVDL  127 (178)
Q Consensus        59 ~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~-~~~~~~ivv~nK~D~  127 (178)
                      +.+++||++|++.++..|..++++++++|+|||+++          .++++.+..|+..+.... .++.|++|++||+|+
T Consensus       217 v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~piiLvgNK~DL  296 (402)
T 1azs_C          217 VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDL  296 (402)
T ss_dssp             EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEEEEEECHHH
T ss_pred             ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEEEEEEChhh
Confidence            788999999999999999999999999999999999          889999999999987753 478999999999998


Q ss_pred             ccccc---c---------------------------CHHHHHHHH-----HH--------cCCeEEEEeCCCCCCHHHHH
Q 030364          128 EEKRK---V---------------------------KNEEGELYA-----QE--------NGLSFLETSAKSAHNVNELF  164 (178)
Q Consensus       128 ~~~~~---~---------------------------~~~~~~~~~-----~~--------~~~~~~~~Sa~~~~~i~~~~  164 (178)
                      ...+.   +                           ..+++..++     +.        ..+.+++|||+++.||+++|
T Consensus       297 ~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d~~nV~~vF  376 (402)
T 1azs_C          297 LAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVF  376 (402)
T ss_dssp             HHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTCHHHHHHHH
T ss_pred             hhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeecCcCHHHHH
Confidence            54332   1                           123444442     22        24678899999999999999


Q ss_pred             HHHHhhcccc
Q 030364          165 YEIGDCTECF  174 (178)
Q Consensus       165 ~~l~~~i~~~  174 (178)
                      .++.+.+.+.
T Consensus       377 ~~v~~~I~~~  386 (402)
T 1azs_C          377 NDCRDIIQRM  386 (402)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9998877543

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=99.88  E-value=7.8e-24  Score=159.74  Aligned_cols=154  Identities=19%  Similarity=0.240  Sum_probs=102.6

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHHhC--cCCCCc---------------------------cCceeeeEEEEEEEeCCeE
Q 030364            8 NIQVKLVLLGDMGTGKTSLVLRFVKG--QFFDFQ---------------------------ESTIGAAFFTQVLSLNEVT   58 (178)
Q Consensus         8 ~~~~~i~v~G~~~~GKStl~~~l~~~--~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~   58 (178)
                      .+.++|+++|++++|||||+++|+..  .+....                           +...+.+.......+....
T Consensus         4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~   83 (435)
T 1jny_A            4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK   83 (435)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS
T ss_pred             CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCC
Confidence            45799999999999999999999864  222110                           0011222222222333344


Q ss_pred             EEEEEEeCCCchhhhccchhhhcCCcEEEEEEECCCHhHHHHHHHH-------HHHHHHhCCCCceEEEEEeCCCCcccc
Q 030364           59 IKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKW-------VQELQRQGNPNLIMFLVANKVDLEEKR  131 (178)
Q Consensus        59 ~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~-------~~~~~~~~~~~~~~ivv~nK~D~~~~~  131 (178)
                      +.+.+||+||+++|...+..++..+|++|+|+|+++ .+|+.+..|       +......  .-.|+++++||+|+.+..
T Consensus        84 ~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~--~~~~iivviNK~Dl~~~~  160 (435)
T 1jny_A           84 YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTM--GLDQLIVAVNKMDLTEPP  160 (435)
T ss_dssp             CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHT--TCTTCEEEEECGGGSSST
T ss_pred             eEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHc--CCCeEEEEEEcccCCCcc
Confidence            678899999999999988889999999999999998 667754332       2222222  223589999999987521


Q ss_pred             ------ccCHHHHHHHHHHcC-----CeEEEEeCCCCCCHHHHH
Q 030364          132 ------KVKNEEGELYAQENG-----LSFLETSAKSAHNVNELF  164 (178)
Q Consensus       132 ------~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~~~  164 (178)
                            +...++...++...+     ++++++||++|.|+.+++
T Consensus       161 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~  204 (435)
T 1jny_A          161 YDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKS  204 (435)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCC
T ss_pred             ccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCccccccc
Confidence                  111234555666555     689999999999997543

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=99.88  E-value=6.9e-23  Score=151.29  Aligned_cols=145  Identities=11%  Similarity=0.081  Sum_probs=104.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEEEE
Q 030364           12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYD   91 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d   91 (178)
                      +|+++|++++|||||+++|+.        ...+.+.....+..+  ...+.+||+||+++|.......+..+|++++|+|
T Consensus        23 ~i~iiG~~d~GKSTL~~~L~~--------~giTi~~~~~~~~~~--~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd   92 (370)
T 2elf_A           23 NVAIIGTEKSGRTSLAANLGK--------KGTSSDITMYNNDKE--GRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP   92 (370)
T ss_dssp             EEEEEESTTSSHHHHHHTTSE--------EEEESSSEEEEECSS--SSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC
T ss_pred             EEEEECCCCCCHHHHHHHHHh--------CCEEEEeeEEEEecC--CeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc
Confidence            999999999999999999971        111112222223333  3568899999999998887888899999999999


Q ss_pred             CCCHhHHHHHHHHHHHHHHhCCCCceE-EEEEe-CCCCccccccCH--HHHHHHHHHc---CCeEEE--EeCCC---CCC
Q 030364           92 ITSMDSFERAKKWVQELQRQGNPNLIM-FLVAN-KVDLEEKRKVKN--EEGELYAQEN---GLSFLE--TSAKS---AHN  159 (178)
Q Consensus        92 ~~~~~s~~~~~~~~~~~~~~~~~~~~~-ivv~n-K~D~~~~~~~~~--~~~~~~~~~~---~~~~~~--~Sa~~---~~~  159 (178)
                       ++ ..+.....++..+...   +.|. ++++| |+|+ ++.....  ++...+.+..   .+++++  +||++   +.|
T Consensus        93 -~~-g~~~qt~e~~~~~~~~---~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~g  166 (370)
T 2elf_A           93 -PQ-GLDAHTGECIIALDLL---GFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEG  166 (370)
T ss_dssp             -TT-CCCHHHHHHHHHHHHT---TCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTT
T ss_pred             -CC-CCcHHHHHHHHHHHHc---CCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCCC
Confidence             53 3445555565555544   4566 88899 9998 4332221  3344444433   369999  99999   999


Q ss_pred             HHHHHHHHHhhcc
Q 030364          160 VNELFYEIGDCTE  172 (178)
Q Consensus       160 i~~~~~~l~~~i~  172 (178)
                      +++++++|.+.+.
T Consensus       167 i~~L~~~l~~~~~  179 (370)
T 2elf_A          167 VDELKARINEVAE  179 (370)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhcc
Confidence            9999999988764

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=99.88  E-value=6.4e-22  Score=153.61  Aligned_cols=157  Identities=22%  Similarity=0.192  Sum_probs=105.7

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCcCCCCc----cCceeeeEEEEEE------------EeCCeEEEEEEEeCCCchhh
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQ----ESTIGAAFFTQVL------------SLNEVTIKFDIWDTAGQERY   72 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~----~~~~~~~~~~~~~------------~~~~~~~~~~i~d~~g~~~~   72 (178)
                      +..+|+++|++++|||||+++|.+..+....    .++.+........            ..+.....+.||||||++.|
T Consensus         4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F   83 (594)
T 1g7s_A            4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF   83 (594)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred             CCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence            4679999999999999999999876543211    1122211111000            00011125889999999999


Q ss_pred             hccchhhhcCCcEEEEEEECCC---HhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccC-------------HH
Q 030364           73 HSLAPMYYRGAAAAVVVYDITS---MDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVK-------------NE  136 (178)
Q Consensus        73 ~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~-------------~~  136 (178)
                      ...+..++..+|++|+|+|+++   +++++.+.    .+..   .+.|+++++||+|+.......             ..
T Consensus        84 ~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~----~l~~---~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~  156 (594)
T 1g7s_A           84 TTLRKRGGALADLAILIVDINEGFKPQTQEALN----ILRM---YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQ  156 (594)
T ss_dssp             TTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHH----HHHH---TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHH
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCccHhHHHHHH----HHHH---cCCeEEEEecccccccccccccCCchHHHHHHhHHH
Confidence            9999989999999999999998   66665543    2222   478999999999986432110             00


Q ss_pred             ----------HHHHHHHHc---------------CCeEEEEeCCCCCCHHHHHHHHHhhcc
Q 030364          137 ----------EGELYAQEN---------------GLSFLETSAKSAHNVNELFYEIGDCTE  172 (178)
Q Consensus       137 ----------~~~~~~~~~---------------~~~~~~~Sa~~~~~i~~~~~~l~~~i~  172 (178)
                                +........               .++++++||++|.|+++++++|...+.
T Consensus       157 v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~  217 (594)
T 1g7s_A          157 VQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ  217 (594)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcc
Confidence                      001111111               238999999999999999999987654

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=99.88  E-value=1.7e-22  Score=155.12  Aligned_cols=116  Identities=14%  Similarity=0.164  Sum_probs=81.5

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHHhCc------------------CCCC----ccCceeeeEEEEEEEeCCeEEEEEEEe
Q 030364            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQ------------------FFDF----QESTIGAAFFTQVLSLNEVTIKFDIWD   65 (178)
Q Consensus         8 ~~~~~i~v~G~~~~GKStl~~~l~~~~------------------~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~d   65 (178)
                      .+..+|+++|++|+|||||+++|+...                  +...    ..+..+.......+.+++  +.+.+||
T Consensus        11 ~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~liD   88 (528)
T 3tr5_A           11 AMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKD--YLINLLD   88 (528)
T ss_dssp             HTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETT--EEEEEEC
T ss_pred             hcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCC--EEEEEEE
Confidence            347899999999999999999996211                  0000    001111111222333343  6788999


Q ss_pred             CCCchhhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcc
Q 030364           66 TAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEE  129 (178)
Q Consensus        66 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~  129 (178)
                      |||+..|...+..+++.+|++|+|+|++++.+......| ..+..   .+.|+++++||+|+..
T Consensus        89 TPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~-~~~~~---~~iPiivviNK~Dl~~  148 (528)
T 3tr5_A           89 TPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLM-EVCRL---RHTPIMTFINKMDRDT  148 (528)
T ss_dssp             CCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHH-HHHHT---TTCCEEEEEECTTSCC
T ss_pred             CCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHH---cCCCEEEEEeCCCCcc
Confidence            999999999999999999999999999987665554433 33333   4789999999999864

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.88  E-value=8.6e-23  Score=154.98  Aligned_cols=155  Identities=15%  Similarity=0.129  Sum_probs=101.5

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCC--------chhhhccchhhh
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAG--------QERYHSLAPMYY   80 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g--------~~~~~~~~~~~~   80 (178)
                      ...+|+++|.+|||||||+|+|.+..+.. ...+.+.+..............+.+|||||        ++.+......++
T Consensus        22 ~~~~V~lvG~~nvGKSTL~n~l~~~~~~~-v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~  100 (456)
T 4dcu_A           22 GKPVVAIVGRPNVGKSTIFNRIAGERISI-VEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAM  100 (456)
T ss_dssp             -CCEEEEECSSSSSHHHHHHHHEEEEEC------------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCCcc-cCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhH
Confidence            35699999999999999999999876542 344455555555555555556788999999        667777888889


Q ss_pred             cCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCC-eEEEEeCCCCCC
Q 030364           81 RGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGL-SFLETSAKSAHN  159 (178)
Q Consensus        81 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~  159 (178)
                      +.+|++++|+|..++....  ..++..+..  ..+.|+++|+||+|+.....    ...++. ..++ ..+.+||++|.|
T Consensus       101 ~~ad~il~VvD~~~~~~~~--d~~l~~~l~--~~~~pvilV~NK~D~~~~~~----~~~e~~-~lg~~~~~~iSA~~g~g  171 (456)
T 4dcu_A          101 DEADVIIFMVNGREGVTAA--DEEVAKILY--RTKKPVVLAVNKLDNTEMRA----NIYDFY-SLGFGEPYPISGTHGLG  171 (456)
T ss_dssp             HHCSEEEEEEESSSCSCHH--HHHHHHHHT--TCCSCEEEEEECC-------------CCSG-GGSSSSEEECCTTTCTT
T ss_pred             hhCCEEEEEEeCCCCCChH--HHHHHHHHH--HcCCCEEEEEECccchhhhh----hHHHHH-HcCCCceEEeecccccc
Confidence            9999999999988643222  223333222  25789999999999864321    111111 1232 567999999999


Q ss_pred             HHHHHHHHHhhccc
Q 030364          160 VNELFYEIGDCTEC  173 (178)
Q Consensus       160 i~~~~~~l~~~i~~  173 (178)
                      ++++++++.+.+..
T Consensus       172 v~~L~~~i~~~l~~  185 (456)
T 4dcu_A          172 LGDLLDAVAEHFKN  185 (456)
T ss_dssp             HHHHHHHHHTTGGG
T ss_pred             hHHHHHHHHhhccc
Confidence            99999999987753

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=99.87  E-value=1.3e-23  Score=159.60  Aligned_cols=155  Identities=21%  Similarity=0.222  Sum_probs=106.8

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEE
Q 030364            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (178)
Q Consensus         8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i   87 (178)
                      ++..+|+++|++++|||||+++|.+..+.....+..+.+.....+..++  ..+.||||||++.|...+...+..+|+++
T Consensus         2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~--~~i~~iDTPGhe~f~~~~~~~~~~aD~aI   79 (501)
T 1zo1_I            2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETEN--GMITFLDTPGHAAFTSMRARGAQATDIVV   79 (501)
T ss_dssp             CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTS--SCCCEECCCTTTCCTTSBCSSSBSCSSEE
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECC--EEEEEEECCCcHHHHHHHHHHHhhCCEEE
Confidence            3567999999999999999999987655433222222221112223333  36779999999999999999999999999


Q ss_pred             EEEECCCH---hHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccc--ccCHHH--HHHHHHHcC--CeEEEEeCCCCC
Q 030364           88 VVYDITSM---DSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR--KVKNEE--GELYAQENG--LSFLETSAKSAH  158 (178)
Q Consensus        88 ~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~--~~~~~~--~~~~~~~~~--~~~~~~Sa~~~~  158 (178)
                      +|+|++++   ++.+.+    ..+..   .+.|+++++||+|+.+..  .+..+.  ...++..++  ++++++||++|.
T Consensus        80 LVVda~~g~~~qT~e~l----~~~~~---~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~  152 (501)
T 1zo1_I           80 LVVAADDGVMPQTIEAI----QHAKA---AQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGT  152 (501)
T ss_dssp             EEEETTTBSCTTTHHHH----HHHHH---TTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCT
T ss_pred             EEeecccCccHHHHHHH----HHHHh---cCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeecc
Confidence            99999873   333322    22222   478899999999996532  111110  001112222  799999999999


Q ss_pred             CHHHHHHHHHhhc
Q 030364          159 NVNELFYEIGDCT  171 (178)
Q Consensus       159 ~i~~~~~~l~~~i  171 (178)
                      |+++++++|....
T Consensus       153 gI~eLle~I~~~~  165 (501)
T 1zo1_I          153 GIDELLDAILLQA  165 (501)
T ss_dssp             TCTTHHHHTTTTC
T ss_pred             Ccchhhhhhhhhh
Confidence            9999999998653

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=99.87  E-value=5.3e-22  Score=161.21  Aligned_cols=162  Identities=15%  Similarity=0.116  Sum_probs=110.5

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHHhCc-------CCC-------CccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhh
Q 030364            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQ-------FFD-------FQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERY   72 (178)
Q Consensus         7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~-------~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~   72 (178)
                      ..+.++|+++|++++|||||+++|.+..       +..       ..+.+.+.+.......++.....+.+|||||++.|
T Consensus       293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF  372 (1289)
T 3avx_A          293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADY  372 (1289)
T ss_dssp             CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHH
T ss_pred             cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHH
Confidence            3467999999999999999999998741       000       01122233322222334444567889999999999


Q ss_pred             hccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCce-EEEEEeCCCCcccccc---CHHHHHHHHHHcC--
Q 030364           73 HSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLI-MFLVANKVDLEEKRKV---KNEEGELYAQENG--  146 (178)
Q Consensus        73 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-~ivv~nK~D~~~~~~~---~~~~~~~~~~~~~--  146 (178)
                      .......+..+|++|+|+|++++... +...++..+...   +.| +++++||+|+.+..+.   ..++...+....+  
T Consensus       373 ~~~mi~gas~AD~aILVVDAtdGv~~-QTrEhL~ll~~l---gIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~~  448 (1289)
T 3avx_A          373 VKNMITGAAQMDGAILVVAATDGPMP-QTREHILLGRQV---GVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFP  448 (1289)
T ss_dssp             HHHHHHTSCCCSEEEEEEETTTCSCT-THHHHHHHHHHH---TCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHhhCCEEEEEEcCCccCcH-HHHHHHHHHHHc---CCCeEEEEEeecccccchhhHHHHHHHHHHHHHhcccc
Confidence            88888889999999999999986432 233444444443   567 7899999999752221   1234455565554  


Q ss_pred             ---CeEEEEeCCCC--------CCHHHHHHHHHhhcc
Q 030364          147 ---LSFLETSAKSA--------HNVNELFYEIGDCTE  172 (178)
Q Consensus       147 ---~~~~~~Sa~~~--------~~i~~~~~~l~~~i~  172 (178)
                         ++++++||++|        .|+++++++|.+.+.
T Consensus       449 ~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip  485 (1289)
T 3avx_A          449 GDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIP  485 (1289)
T ss_dssp             TTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSC
T ss_pred             ccceeEEEEEeccCCCCCccccccchhhHhHHhhhcC
Confidence               68999999999        469999999988665

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=99.87  E-value=9.5e-23  Score=158.99  Aligned_cols=155  Identities=17%  Similarity=0.188  Sum_probs=99.3

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCcc-----------------------------CceeeeEEEEEEEeCCe
Q 030364            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQE-----------------------------STIGAAFFTQVLSLNEV   57 (178)
Q Consensus         7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~   57 (178)
                      ..+.++|+++|++++|||||+++|++....-...                             ...+.+.......+...
T Consensus       164 ~k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~  243 (611)
T 3izq_1          164 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH  243 (611)
T ss_dssp             CCCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECS
T ss_pred             cCCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecC
Confidence            3458999999999999999999998653211000                             00111211111222223


Q ss_pred             EEEEEEEeCCCchhhhccchhhhcCCcEEEEEEECCCHhH---H---HHHHHHHHHHHHhCCCCceEEEEEeCCCCcccc
Q 030364           58 TIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDS---F---ERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR  131 (178)
Q Consensus        58 ~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~  131 (178)
                      .+.+.||||||++.|......++..+|++|+|+|++++..   +   ......+..+...  ...|++||+||+|+.+..
T Consensus       244 ~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~l--gi~~iIVVvNKiDl~~~~  321 (611)
T 3izq_1          244 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL--GIHNLIIAMNKMDNVDWS  321 (611)
T ss_dssp             SCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTT--TCCEEEEEEECTTTTTTC
T ss_pred             CceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHc--CCCeEEEEEecccccchh
Confidence            4578899999999999988889999999999999997531   1   1112222222222  234589999999987532


Q ss_pred             ccC----HHHHHHHHHHc-----CCeEEEEeCCCCCCHHHH
Q 030364          132 KVK----NEEGELYAQEN-----GLSFLETSAKSAHNVNEL  163 (178)
Q Consensus       132 ~~~----~~~~~~~~~~~-----~~~~~~~Sa~~~~~i~~~  163 (178)
                      +..    ..+...+....     +++++++||++|.|++++
T Consensus       322 ~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el  362 (611)
T 3izq_1          322 QQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI  362 (611)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred             HHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence            211    12223333333     369999999999999865

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=99.86  E-value=6.6e-23  Score=155.80  Aligned_cols=156  Identities=17%  Similarity=0.210  Sum_probs=89.8

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHHhC--cCCCC---------------------c------cCceeeeEE--EEEEEeC
Q 030364            7 KNIQVKLVLLGDMGTGKTSLVLRFVKG--QFFDF---------------------Q------ESTIGAAFF--TQVLSLN   55 (178)
Q Consensus         7 ~~~~~~i~v~G~~~~GKStl~~~l~~~--~~~~~---------------------~------~~~~~~~~~--~~~~~~~   55 (178)
                      .++.++|+++|++++|||||+++|+..  .+...                     .      +...+.+..  ...+..+
T Consensus        40 ~k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~  119 (467)
T 1r5b_A           40 GKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETE  119 (467)
T ss_dssp             CCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECS
T ss_pred             CCCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecC
Confidence            355789999999999999999999752  21100                     0      000111111  1122333


Q ss_pred             CeEEEEEEEeCCCchhhhccchhhhcCCcEEEEEEECCCHh---HHHHHHHHHHHHHHhCCCCce-EEEEEeCCCCcccc
Q 030364           56 EVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMD---SFERAKKWVQELQRQGNPNLI-MFLVANKVDLEEKR  131 (178)
Q Consensus        56 ~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~-~ivv~nK~D~~~~~  131 (178)
                        ...+.+||+||++.|...+...+..+|++|+|+|++++.   +|+....+...+......+.| ++|++||+|+....
T Consensus       120 --~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~  197 (467)
T 1r5b_A          120 --HRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQ  197 (467)
T ss_dssp             --SEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCS
T ss_pred             --CeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCcc
Confidence              357889999999999998888899999999999999863   333211222222221123566 89999999985421


Q ss_pred             ------ccCHHHHHHHHHHc-------CCeEEEEeCCCCCCHHHHH
Q 030364          132 ------KVKNEEGELYAQEN-------GLSFLETSAKSAHNVNELF  164 (178)
Q Consensus       132 ------~~~~~~~~~~~~~~-------~~~~~~~Sa~~~~~i~~~~  164 (178)
                            +....+...++...       +++++++||++|.|+++++
T Consensus       198 ~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~  243 (467)
T 1r5b_A          198 WSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV  243 (467)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred             ccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence                  11122344555544       4679999999999998755

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=99.86  E-value=3.2e-23  Score=157.15  Aligned_cols=152  Identities=13%  Similarity=0.156  Sum_probs=100.4

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHHhC--cCCCC-----------------------------ccCceeeeEEEEEEEeC
Q 030364            7 KNIQVKLVLLGDMGTGKTSLVLRFVKG--QFFDF-----------------------------QESTIGAAFFTQVLSLN   55 (178)
Q Consensus         7 ~~~~~~i~v~G~~~~GKStl~~~l~~~--~~~~~-----------------------------~~~~~~~~~~~~~~~~~   55 (178)
                      ..+.++|+++|++++|||||+++|++.  .+...                             .....+.+....  .+.
T Consensus         4 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~--~~~   81 (458)
T 1f60_A            4 EKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALW--KFE   81 (458)
T ss_dssp             CCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCE--EEE
T ss_pred             CCceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEE--EEe
Confidence            346899999999999999999999864  11110                             001111111112  223


Q ss_pred             CeEEEEEEEeCCCchhhhccchhhhcCCcEEEEEEECCCHh---HHH---HHHHHHHHHHHhCCCCce-EEEEEeCCCCc
Q 030364           56 EVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMD---SFE---RAKKWVQELQRQGNPNLI-MFLVANKVDLE  128 (178)
Q Consensus        56 ~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~~-~ivv~nK~D~~  128 (178)
                      .....+.+||+||++.|......++..+|++|+|+|++++.   +|+   .....+..+..   .+.| +++++||+|+.
T Consensus        82 ~~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~---~~v~~iivviNK~Dl~  158 (458)
T 1f60_A           82 TPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT---LGVRQLIVAVNKMDSV  158 (458)
T ss_dssp             CSSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH---TTCCEEEEEEECGGGG
T ss_pred             cCCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH---cCCCeEEEEEEccccc
Confidence            33467889999999999988888999999999999999753   221   22233333332   2454 89999999987


Q ss_pred             cccc----cCHHHHHHHHHHcC-----CeEEEEeCCCCCCHHHH
Q 030364          129 EKRK----VKNEEGELYAQENG-----LSFLETSAKSAHNVNEL  163 (178)
Q Consensus       129 ~~~~----~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~~  163 (178)
                      +..+    ...++...+++..+     ++++++||++|.|+.++
T Consensus       159 ~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~  202 (458)
T 1f60_A          159 KWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA  202 (458)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred             cCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence            3111    11233444555554     68999999999998743

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.85  E-value=3.9e-21  Score=131.77  Aligned_cols=159  Identities=12%  Similarity=0.107  Sum_probs=98.7

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchh----------hhccch
Q 030364            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER----------YHSLAP   77 (178)
Q Consensus         8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~----------~~~~~~   77 (178)
                      .+..+|+++|++|||||||++++.+..+.....++.+.+.......+++   .+.+||+||...          +.....
T Consensus        24 ~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~  100 (210)
T 1pui_A           24 DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRALG  100 (210)
T ss_dssp             SCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHHH
Confidence            4578999999999999999999997764444455666554433333333   456999999732          222223


Q ss_pred             hhh---cCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccc--cCHHHHHHHHHHcC--CeEE
Q 030364           78 MYY---RGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRK--VKNEEGELYAQENG--LSFL  150 (178)
Q Consensus        78 ~~~---~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~--~~~~  150 (178)
                      .++   ..++++++++|++++.+.... .....+..   .+.|+++++||+|+....+  ........++...+  +.++
T Consensus       101 ~~~~~~~~~~~~~~v~d~~~~~~~~~~-~~~~~~~~---~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~  176 (210)
T 1pui_A          101 EYLEKRQSLQGLVVLMDIRHPLKDLDQ-QMIEWAVD---SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVE  176 (210)
T ss_dssp             HHHHHCTTEEEEEEEEETTSCCCHHHH-HHHHHHHH---TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEE
T ss_pred             HHHHhhhcccEEEEEEECCCCCchhHH-HHHHHHHH---cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCceE
Confidence            333   468999999999976544321 11111222   3678899999999864322  11234444444443  5789


Q ss_pred             EEeCCCCCCHHHHHHHHHhhccc
Q 030364          151 ETSAKSAHNVNELFYEIGDCTEC  173 (178)
Q Consensus       151 ~~Sa~~~~~i~~~~~~l~~~i~~  173 (178)
                      ++||+++.|+++++++|.+.+..
T Consensus       177 ~~Sal~~~~~~~l~~~l~~~~~~  199 (210)
T 1pui_A          177 TFSSLKKQGVDKLRQKLDTWFSE  199 (210)
T ss_dssp             ECBTTTTBSHHHHHHHHHHHHC-
T ss_pred             EEeecCCCCHHHHHHHHHHHHhh
Confidence            99999999999999999887654

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=99.85  E-value=7.9e-22  Score=142.15  Aligned_cols=160  Identities=14%  Similarity=0.148  Sum_probs=100.8

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCc------cCcee--------------------eeE--------------
Q 030364            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQ------ESTIG--------------------AAF--------------   47 (178)
Q Consensus         8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~------~~~~~--------------------~~~--------------   47 (178)
                      ...++|+|+|.+|+|||||+|+|++..+.+..      .|+..                    .+.              
T Consensus        24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i  103 (299)
T 2aka_B           24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV  103 (299)
T ss_dssp             CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHh
Confidence            35679999999999999999999988764221      12100                    000              


Q ss_pred             -----------EEEEEEeCCeEEEEEEEeCCCch-------------hhhccchhhhcCCcEEE-EEEECCCHhHHHHHH
Q 030364           48 -----------FTQVLSLNEVTIKFDIWDTAGQE-------------RYHSLAPMYYRGAAAAV-VVYDITSMDSFERAK  102 (178)
Q Consensus        48 -----------~~~~~~~~~~~~~~~i~d~~g~~-------------~~~~~~~~~~~~~d~~i-~v~d~~~~~s~~~~~  102 (178)
                                 ....+... ....+.+|||||..             .+......+++.++.++ +|+|+++..+.....
T Consensus       104 ~g~~~gi~~~~~~~~~~~~-~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~  182 (299)
T 2aka_B          104 TGTNKGISPVPINLRVYSP-HVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL  182 (299)
T ss_dssp             CSSTTCCCSCCEEEEEEET-TCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHH
T ss_pred             cccCCCccccceEEEEeCC-CCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHH
Confidence                       00000001 02578899999963             34456667888888776 799998754433322


Q ss_pred             HHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHH--cC-CeEEEEeCCCCCCHHHHHHHHHhhc
Q 030364          103 KWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQE--NG-LSFLETSAKSAHNVNELFYEIGDCT  171 (178)
Q Consensus       103 ~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~--~~-~~~~~~Sa~~~~~i~~~~~~l~~~i  171 (178)
                      .++..+.   ..+.|+++|+||+|+.+...............  .+ .+++++||++|.|+++++++|.+..
T Consensus       183 ~~~~~~~---~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~~  251 (299)
T 2aka_B          183 KIAKEVD---PQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAER  251 (299)
T ss_dssp             HHHHHHC---TTCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHHH
T ss_pred             HHHHHhC---CCCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHHH
Confidence            3333332   35789999999999875443222221110001  12 3688999999999999999987743

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=99.84  E-value=1.2e-22  Score=158.03  Aligned_cols=162  Identities=19%  Similarity=0.205  Sum_probs=89.6

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHHhCcC--CCC---------------------------ccCceeeeEEEEEEEeCCe
Q 030364            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQF--FDF---------------------------QESTIGAAFFTQVLSLNEV   57 (178)
Q Consensus         7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~~--~~~---------------------------~~~~~~~~~~~~~~~~~~~   57 (178)
                      ..+.++|+++|++++|||||+++|+....  ...                           .....+.+.......+...
T Consensus       174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~  253 (592)
T 3mca_A          174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD  253 (592)
T ss_dssp             CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC
Confidence            45688999999999999999999964210  000                           0001222222223333334


Q ss_pred             EEEEEEEeCCCchhhhccchhhhcCCcEEEEEEECCCHh---HH---HHHHHHHHHHHHhCCCCce-EEEEEeCCCCccc
Q 030364           58 TIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMD---SF---ERAKKWVQELQRQGNPNLI-MFLVANKVDLEEK  130 (178)
Q Consensus        58 ~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~---~~~~~~~~~~~~~~~~~~~-~ivv~nK~D~~~~  130 (178)
                      ...+.||||||+..|.......+..+|++|+|+|++++.   .+   ......+..+...   +.| ++||+||+|+.+.
T Consensus       254 ~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~l---gip~iIvviNKiDl~~~  330 (592)
T 3mca_A          254 KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRAL---GISEIVVSVNKLDLMSW  330 (592)
T ss_dssp             -----CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHS---SCCCEEEEEECGGGGTT
T ss_pred             CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHc---CCCeEEEEEeccccccc
Confidence            467889999999999998888999999999999998642   11   1112222333333   454 8999999998652


Q ss_pred             cc-c---CHHHHHHHH-HHcCC-----eEEEEeCCCCCCHH--------------HHHHHHHhhc
Q 030364          131 RK-V---KNEEGELYA-QENGL-----SFLETSAKSAHNVN--------------ELFYEIGDCT  171 (178)
Q Consensus       131 ~~-~---~~~~~~~~~-~~~~~-----~~~~~Sa~~~~~i~--------------~~~~~l~~~i  171 (178)
                      .. .   ...+...+. ...++     +++++||++|.|+.              .+++.|.+.+
T Consensus       331 ~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~  395 (592)
T 3mca_A          331 SEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLV  395 (592)
T ss_dssp             CHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSC
T ss_pred             cHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHhhc
Confidence            21 1   112233333 33344     79999999999998              7888877654

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=99.84  E-value=3.2e-20  Score=146.29  Aligned_cols=117  Identities=18%  Similarity=0.111  Sum_probs=80.7

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccC----------------ceeeeEEEEEEEeCCeEEEEEEEeCCCchh
Q 030364            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQES----------------TIGAAFFTQVLSLNEVTIKFDIWDTAGQER   71 (178)
Q Consensus         8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~   71 (178)
                      .+..+|+++|++|+|||||+++|.+.........                ..+.++......+....+.+++||+||+..
T Consensus         7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~   86 (665)
T 2dy1_A            7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGD   86 (665)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGG
T ss_pred             CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccc
Confidence            4578999999999999999999985332100000                011121112222222346788999999999


Q ss_pred             hhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCc
Q 030364           72 YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLE  128 (178)
Q Consensus        72 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~  128 (178)
                      |......+++.+|++++|+|+++...... ..++..+..   .+.|+++++||+|+.
T Consensus        87 f~~~~~~~l~~ad~~ilVvD~~~g~~~qt-~~~~~~~~~---~~ip~ilv~NKiD~~  139 (665)
T 2dy1_A           87 FVGEIRGALEAADAALVAVSAEAGVQVGT-ERAWTVAER---LGLPRMVVVTKLDKG  139 (665)
T ss_dssp             GHHHHHHHHHHCSEEEEEEETTTCSCHHH-HHHHHHHHH---TTCCEEEEEECGGGC
T ss_pred             hHHHHHHHHhhcCcEEEEEcCCcccchhH-HHHHHHHHH---ccCCEEEEecCCchh
Confidence            99888999999999999999887543332 344444444   368899999999986

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.83  E-value=5.2e-20  Score=137.36  Aligned_cols=160  Identities=17%  Similarity=0.104  Sum_probs=108.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchh----hhccchh---hhcCCc
Q 030364           12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER----YHSLAPM---YYRGAA   84 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~----~~~~~~~---~~~~~d   84 (178)
                      .|+++|++|||||||++.+.+....-...+..+.......+..++ ...+.+||+||...    +..+...   .+..++
T Consensus       159 ~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~  237 (416)
T 1udx_A          159 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIARTR  237 (416)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred             EEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHHHH
Confidence            589999999999999999987643111111111122223334443 24577999999632    2222222   245799


Q ss_pred             EEEEEEECCCHhHHHHHHHHHHHHHHhC--CCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHH
Q 030364           85 AAVVVYDITSMDSFERAKKWVQELQRQG--NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNE  162 (178)
Q Consensus        85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  162 (178)
                      .+++++|++ ...+..+..+.+++....  ....|.++++||+|+... . ..+.........+++++.+||+++.|+++
T Consensus       238 ~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~-~-~~~~l~~~l~~~g~~vi~iSA~~g~gi~e  314 (416)
T 1udx_A          238 VLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE-E-AVKALADALAREGLAVLPVSALTGAGLPA  314 (416)
T ss_dssp             EEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH-H-HHHHHHHHHHTTTSCEEECCTTTCTTHHH
T ss_pred             hhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH-H-HHHHHHHHHHhcCCeEEEEECCCccCHHH
Confidence            999999998 566777776666665542  235788999999998754 1 12333444455678999999999999999


Q ss_pred             HHHHHHhhccccc
Q 030364          163 LFYEIGDCTECFS  175 (178)
Q Consensus       163 ~~~~l~~~i~~~~  175 (178)
                      ++++|.+.+...+
T Consensus       315 L~~~i~~~l~~~~  327 (416)
T 1udx_A          315 LKEALHALVRSTP  327 (416)
T ss_dssp             HHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHhcc
Confidence            9999999887544

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=99.83  E-value=1.3e-19  Score=128.30  Aligned_cols=120  Identities=15%  Similarity=0.135  Sum_probs=82.9

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHHhCcCCC-CccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhc-----
Q 030364            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFD-FQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYR-----   81 (178)
Q Consensus         8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~-----   81 (178)
                      .+.++|+++|.+|+|||||+++|++..... ...+..+..........++  ..+.+|||||+..+......+++     
T Consensus        34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~liDTpG~~~~~~~~~~~~~~i~~~  111 (262)
T 3def_A           34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGG--FTINIIDTPGLVEAGYVNHQALELIKGF  111 (262)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECC--eeEEEEECCCCCCcccchHHHHHHHHHH
Confidence            358999999999999999999999877522 1222222233334445555  47789999999877666555443     


Q ss_pred             ----CCcEEEEEEECCCHhHHHH-HHHHHHHHHHhCCCC--ceEEEEEeCCCCccc
Q 030364           82 ----GAAAAVVVYDITSMDSFER-AKKWVQELQRQGNPN--LIMFLVANKVDLEEK  130 (178)
Q Consensus        82 ----~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~--~~~ivv~nK~D~~~~  130 (178)
                          .+|++++|++++... +.. -..++..+......+  .|+++|+||+|+...
T Consensus       112 l~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~  166 (262)
T 3def_A          112 LVNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPP  166 (262)
T ss_dssp             TTTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCS
T ss_pred             HhcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCC
Confidence                789999999987644 332 245666666543333  489999999998543

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=99.82  E-value=6.1e-20  Score=145.19  Aligned_cols=117  Identities=17%  Similarity=0.175  Sum_probs=82.0

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHHhCc--CCCC--------c--------cCceeeeEEEEEEEeCCeEEEEEEEeCCC
Q 030364            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQ--FFDF--------Q--------ESTIGAAFFTQVLSLNEVTIKFDIWDTAG   68 (178)
Q Consensus         7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~--~~~~--------~--------~~~~~~~~~~~~~~~~~~~~~~~i~d~~g   68 (178)
                      .....+|+++|++|+|||||+++|+...  +...        .        ....+.......+.++  .+.+.+|||||
T Consensus         9 ~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~--~~~i~liDTPG   86 (691)
T 1dar_A            9 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWK--DHRINIIDTPG   86 (691)
T ss_dssp             GGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEET--TEEEEEECCCS
T ss_pred             cccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEEC--CeEEEEEECcC
Confidence            3568899999999999999999998421  1000        0        0011111112222333  36788999999


Q ss_pred             chhhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcc
Q 030364           69 QERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEE  129 (178)
Q Consensus        69 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~  129 (178)
                      +..|...+..+++.+|++|+|+|++++.+......|. .+..   .+.|+++++||+|+..
T Consensus        87 ~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~-~~~~---~~~p~ivviNKiD~~~  143 (691)
T 1dar_A           87 HVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWR-QAEK---YKVPRIAFANKMDKTG  143 (691)
T ss_dssp             STTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHH-HHHH---TTCCEEEEEECTTSTT
T ss_pred             ccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHH-HHHH---cCCCEEEEEECCCccc
Confidence            9999988999999999999999999877766654443 3333   3789999999999864

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=99.82  E-value=9.4e-20  Score=144.21  Aligned_cols=162  Identities=14%  Similarity=0.162  Sum_probs=105.7

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCcCCCC-ccCceee------------eE----------------------------
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDF-QESTIGA------------AF----------------------------   47 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~~~-~~~~~~~------------~~----------------------------   47 (178)
                      ..++|+|+|.+|+|||||+|+|++....+. ..|++..            +.                            
T Consensus        68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~  147 (695)
T 2j69_A           68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK  147 (695)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence            478999999999999999999998765331 2222210            00                            


Q ss_pred             -------------EEEEEEeCCeE--EEEEEEeCCCchhh---hccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHH
Q 030364           48 -------------FTQVLSLNEVT--IKFDIWDTAGQERY---HSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQ  109 (178)
Q Consensus        48 -------------~~~~~~~~~~~--~~~~i~d~~g~~~~---~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~  109 (178)
                                   ....+.++...  ..+.+|||||....   ......+++.+|++++|+|++++.+......|...+.
T Consensus       148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~  227 (695)
T 2j69_A          148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIK  227 (695)
T ss_dssp             HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTT
T ss_pred             HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHH
Confidence                         00001111100  24789999997653   3445678899999999999998777666554443332


Q ss_pred             HhCCCCceEEEEEeCCCCccccccCHH----------HHH-----HHHHH--------cCCeEEEEeCC-----------
Q 030364          110 RQGNPNLIMFLVANKVDLEEKRKVKNE----------EGE-----LYAQE--------NGLSFLETSAK-----------  155 (178)
Q Consensus       110 ~~~~~~~~~ivv~nK~D~~~~~~~~~~----------~~~-----~~~~~--------~~~~~~~~Sa~-----------  155 (178)
                      .   .+.|+++|+||+|+.....+..+          ...     .+...        ...+++++||+           
T Consensus       228 ~---~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~  304 (695)
T 2j69_A          228 G---RGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQ  304 (695)
T ss_dssp             T---SCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTT
T ss_pred             h---hCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCch
Confidence            2   36789999999998654311111          011     11111        12479999999           


Q ss_pred             ---CCCCHHHHHHHHHhhccc
Q 030364          156 ---SAHNVNELFYEIGDCTEC  173 (178)
Q Consensus       156 ---~~~~i~~~~~~l~~~i~~  173 (178)
                         ++.|+++++++|.+.+..
T Consensus       305 ~~~~~~Gi~~L~~~L~~~l~~  325 (695)
T 2j69_A          305 ADLDGTGFPKFMDSLNTFLTR  325 (695)
T ss_dssp             CCCTTSSHHHHHHHHHHHHHH
T ss_pred             hhhhccCHHHHHHHHHHHHHH
Confidence               999999999999887643

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=99.82  E-value=2.2e-19  Score=138.00  Aligned_cols=118  Identities=14%  Similarity=0.149  Sum_probs=77.8

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHHhCcC-CCC-------------------ccCceeeeEEEEEEEeCCeEEEEEEEeCC
Q 030364            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQF-FDF-------------------QESTIGAAFFTQVLSLNEVTIKFDIWDTA   67 (178)
Q Consensus         8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~-~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~i~d~~   67 (178)
                      .+..+|+++|++|+|||||+++|+.... ...                   ..+..+.+.......+....+.+.+||||
T Consensus        11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTP   90 (529)
T 2h5e_A           11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTP   90 (529)
T ss_dssp             HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCC
T ss_pred             cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECC
Confidence            3578999999999999999999986321 000                   00111111111112222234678899999


Q ss_pred             CchhhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcc
Q 030364           68 GQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEE  129 (178)
Q Consensus        68 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~  129 (178)
                      |+..|......++..+|++|+|+|++++.... ...++..+   ...+.|+++++||+|+..
T Consensus        91 G~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~-t~~~~~~~---~~~~ipiivviNK~Dl~~  148 (529)
T 2h5e_A           91 GHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDR-TRKLMEVT---RLRDTPILTFMNKLDRDI  148 (529)
T ss_dssp             CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHH-HHHHHHHH---TTTTCCEEEEEECTTSCC
T ss_pred             CChhHHHHHHHHHHHCCEEEEEEeCCccchHH-HHHHHHHH---HHcCCCEEEEEcCcCCcc
Confidence            99999888888999999999999999753221 22222222   235789999999999854

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=99.81  E-value=1.6e-19  Score=128.49  Aligned_cols=121  Identities=12%  Similarity=0.132  Sum_probs=78.9

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHHhCcCCCC-ccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchh-------h
Q 030364            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDF-QESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPM-------Y   79 (178)
Q Consensus         8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~-------~   79 (178)
                      ...++|+++|.+|+|||||+|+|++..+... ..+..+..........+  .+.+.+|||||...+......       +
T Consensus        37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~l~iiDTpG~~~~~~~~~~~~~~i~~~  114 (270)
T 1h65_A           37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRA--GFTLNIIDTPGLIEGGYINDMALNIIKSF  114 (270)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEET--TEEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeC--CeEEEEEECCCCCCCccchHHHHHHHHHH
Confidence            3589999999999999999999998775321 11111112222223333  367889999998665543221       1


Q ss_pred             --hcCCcEEEEEEECCCHhHHHH-HHHHHHHHHHhCCCC--ceEEEEEeCCCCcccc
Q 030364           80 --YRGAAAAVVVYDITSMDSFER-AKKWVQELQRQGNPN--LIMFLVANKVDLEEKR  131 (178)
Q Consensus        80 --~~~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~--~~~ivv~nK~D~~~~~  131 (178)
                        ...+|++++|+|++.. ++.. -..|+..+......+  .|+++|+||+|+..+.
T Consensus       115 ~~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~  170 (270)
T 1h65_A          115 LLDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPD  170 (270)
T ss_dssp             TTTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGG
T ss_pred             hhcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcC
Confidence              2468999999998753 2332 235666665543333  6899999999986544

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.81  E-value=8.5e-21  Score=136.76  Aligned_cols=160  Identities=14%  Similarity=0.184  Sum_probs=84.5

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHHhC-cCCCCc--------cCceeeeEEEEEEEeCCeEEEEEEEeCCCc-------hh
Q 030364            8 NIQVKLVLLGDMGTGKTSLVLRFVKG-QFFDFQ--------ESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ-------ER   71 (178)
Q Consensus         8 ~~~~~i~v~G~~~~GKStl~~~l~~~-~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~-------~~   71 (178)
                      ...++|+++|++|+|||||+++|.+. .++...        .++.............+....+.+||++|.       +.
T Consensus        16 ~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~   95 (301)
T 2qnr_A           16 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC   95 (301)
T ss_dssp             --CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHH
Confidence            45789999999999999999998865 333222        111111111122222444578899999997       44


Q ss_pred             hhccch-------hhhcC-------------CcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccc
Q 030364           72 YHSLAP-------MYYRG-------------AAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR  131 (178)
Q Consensus        72 ~~~~~~-------~~~~~-------------~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~  131 (178)
                      +.....       .++..             +++++++.+.+. .+++.+.  ...+... ..+.|+++|+||.|+....
T Consensus        96 ~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~--~~~l~~l-~~~~~iilV~~K~Dl~~~~  171 (301)
T 2qnr_A           96 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLD--VAFMKAI-HNKVNIVPVIAKADTLTLK  171 (301)
T ss_dssp             CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHH--HHHHHHH-TTTSCEEEEECCGGGSCHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHH--HHHHHHH-HhcCCEEEEEEeCCCCCHH
Confidence            443332       33322             233555555432 1233222  1223332 2467899999999987654


Q ss_pred             cc--CHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHhhcc
Q 030364          132 KV--KNEEGELYAQENGLSFLETSAKSAHNVNELFYEIGDCTE  172 (178)
Q Consensus       132 ~~--~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~  172 (178)
                      ++  ..++...+++.++++++++||+++ |++++|.++.+.+.
T Consensus       172 e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~  213 (301)
T 2qnr_A          172 ERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLK  213 (301)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhh
Confidence            43  235667788889999999999999 99999999988774

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=99.81  E-value=1.6e-18  Score=137.29  Aligned_cols=125  Identities=18%  Similarity=0.144  Sum_probs=84.9

Q ss_pred             CcccCCCCceeEEEEEcCCCCCHHHHHHHHHhCc--CCCC-----------cc---CceeeeEE--EEEEEeC-----Ce
Q 030364            1 MARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQ--FFDF-----------QE---STIGAAFF--TQVLSLN-----EV   57 (178)
Q Consensus         1 m~~~~~~~~~~~i~v~G~~~~GKStl~~~l~~~~--~~~~-----------~~---~~~~~~~~--~~~~~~~-----~~   57 (178)
                      |.+........+|+|+|+.++|||||+++|+...  +...           +.   ...+.+..  ...+.++     +.
T Consensus         1 ~~~~~~~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~   80 (704)
T 2rdo_7            1 MARTTPIARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYE   80 (704)
T ss_pred             CCCCCCcccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCC
Confidence            4433445568899999999999999999997531  1110           00   01111111  1122222     33


Q ss_pred             EEEEEEEeCCCchhhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcc
Q 030364           58 TIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEE  129 (178)
Q Consensus        58 ~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~  129 (178)
                      .+.+.||||||+.+|...+..+++.+|++|+|+|+++.........| .....   .+.|+++++||+|+..
T Consensus        81 ~~~i~liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~-~~~~~---~~ip~ilviNKiD~~~  148 (704)
T 2rdo_7           81 PHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVW-RQANK---YKVPRIAFVNKMDRMG  148 (704)
T ss_pred             ceeEEEEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHH-HHHHH---cCCCEEEEEeCCCccc
Confidence            48899999999999988889999999999999999987554443333 33332   3788999999999854

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=99.81  E-value=1.4e-20  Score=138.90  Aligned_cols=155  Identities=15%  Similarity=0.161  Sum_probs=101.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeee-EEEE--------------------------------------
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAA-FFTQ--------------------------------------   50 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~-~~~~--------------------------------------   50 (178)
                      ..+|+|+|.+|||||||+++|.+..+.+......+.. ....                                      
T Consensus        34 lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~  113 (360)
T 3t34_A           34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDR  113 (360)
T ss_dssp             CCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHHH
Confidence            4599999999999999999999977633222211100 0000                                      


Q ss_pred             -------------EEE-eCCeEEEEEEEeCCCchhh-------------hccchhhhcCCcEEEEEEECCCHhHHHHHHH
Q 030364           51 -------------VLS-LNEVTIKFDIWDTAGQERY-------------HSLAPMYYRGAAAAVVVYDITSMDSFERAKK  103 (178)
Q Consensus        51 -------------~~~-~~~~~~~~~i~d~~g~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~  103 (178)
                                   ... .......+.+||+||...+             ......++..+|++|+++|.++.+...  ..
T Consensus       114 ~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~~  191 (360)
T 3t34_A          114 ETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--SD  191 (360)
T ss_dssp             TSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--CH
T ss_pred             hcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--HH
Confidence                         000 0011235789999997665             445677899999999999876533221  23


Q ss_pred             HHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Q 030364          104 WVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYE  166 (178)
Q Consensus       104 ~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  166 (178)
                      ++..+......+.|+++|+||+|+........+....+...++.+|+.+|+.++.++++.+..
T Consensus       192 ~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~  254 (360)
T 3t34_A          192 AIKISREVDPSGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDM  254 (360)
T ss_dssp             HHHHHHHSCTTCTTEEEEEECGGGCCTTCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCH
T ss_pred             HHHHHHHhcccCCCEEEEEeCCccCCCcccHHHHHcCccccccCCeEEEEECChHHhccCCCH
Confidence            344444444457899999999998765544433333344456789999999999888765544

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=99.81  E-value=2.9e-19  Score=141.38  Aligned_cols=123  Identities=19%  Similarity=0.213  Sum_probs=85.4

Q ss_pred             CcccCCCCceeEEEEEcCCCCCHHHHHHHHHh--CcCCCC-----------c-----cCceeeeEEEEEEEeCCeEEEEE
Q 030364            1 MARTSNKNIQVKLVLLGDMGTGKTSLVLRFVK--GQFFDF-----------Q-----ESTIGAAFFTQVLSLNEVTIKFD   62 (178)
Q Consensus         1 m~~~~~~~~~~~i~v~G~~~~GKStl~~~l~~--~~~~~~-----------~-----~~~~~~~~~~~~~~~~~~~~~~~   62 (178)
                      |++........+|+++|++|+|||||+++|+.  +.+...           +     .+..+.......+.+++  +.+.
T Consensus         1 m~~~~~~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~--~~i~   78 (693)
T 2xex_A            1 MAREFSLEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEG--HRVN   78 (693)
T ss_dssp             -CCSSCSTTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETT--EEEE
T ss_pred             CCCcCCcccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECC--eeEE
Confidence            45555566789999999999999999999985  222100           0     00111111112233343  6788


Q ss_pred             EEeCCCchhhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcc
Q 030364           63 IWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEE  129 (178)
Q Consensus        63 i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~  129 (178)
                      +|||||+..+......+++.+|++++|+|++++.+......| ..+..   .+.|+++++||+|+..
T Consensus        79 liDTPG~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~-~~~~~---~~~p~ilviNK~Dl~~  141 (693)
T 2xex_A           79 IIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVW-RQATT---YGVPRIVFVNKMDKLG  141 (693)
T ss_dssp             EECCCCCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHH-HHHHH---TTCCEEEEEECTTSTT
T ss_pred             EEECcCCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHH-HHHHH---cCCCEEEEEECCCccc
Confidence            999999999888888899999999999999987666555444 33443   3789999999999854

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.80  E-value=2.2e-20  Score=134.73  Aligned_cols=137  Identities=16%  Similarity=0.123  Sum_probs=110.1

Q ss_pred             HHHHHHHhCcCC-CCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEEEECCCHh-HHHHHH
Q 030364           25 SLVLRFVKGQFF-DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMD-SFERAK  102 (178)
Q Consensus        25 tl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~  102 (178)
                      +|+.++..+.+. ..+.||.+..+. .....++   .+.+||+  ++.++.++..+++++|++++|||+++++ ++..+.
T Consensus        32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~  105 (301)
T 1u0l_A           32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIID  105 (301)
T ss_dssp             CEEEEEECGGGTTTTCCCCTTCEEE-EECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHH
T ss_pred             cEEEEEEcccccccCCCCCCccEEE-EEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHH
Confidence            577778888887 778899885544 2222222   6789999  8889999999999999999999999987 788888


Q ss_pred             HHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcC--CeEEEEeCCCCCCHHHHHHHHHhhcc
Q 030364          103 KWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENG--LSFLETSAKSAHNVNELFYEIGDCTE  172 (178)
Q Consensus       103 ~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~~~~~l~~~i~  172 (178)
                      .|+..+..   .+.|+++|+||+|+.+.+.+  ++...+++.++  +++++|||++|.|++++|.++...+-
T Consensus       106 ~~l~~~~~---~~~piilv~NK~DL~~~~~v--~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~geiv  172 (301)
T 1u0l_A          106 KFLVLAEK---NELETVMVINKMDLYDEDDL--RKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKGKIS  172 (301)
T ss_dssp             HHHHHHHH---TTCEEEEEECCGGGCCHHHH--HHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHSSSEE
T ss_pred             HHHHHHHH---CCCCEEEEEeHHHcCCchhH--HHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhcCCeE
Confidence            99887755   47899999999999764433  44566666666  89999999999999999998876543

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=99.80  E-value=1.8e-19  Score=130.76  Aligned_cols=111  Identities=16%  Similarity=0.115  Sum_probs=68.0

Q ss_pred             EEEEEEeCCCchh-------------hhccchhhhcCCcEEEEEEECCCHhHH-HHHHHHHHHHHHhCCCCceEEEEEeC
Q 030364           59 IKFDIWDTAGQER-------------YHSLAPMYYRGAAAAVVVYDITSMDSF-ERAKKWVQELQRQGNPNLIMFLVANK  124 (178)
Q Consensus        59 ~~~~i~d~~g~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~~~ivv~nK  124 (178)
                      ..+.+|||||...             +......++..+|++++|+|.++.... .....+...+   ...+.|+++|+||
T Consensus       131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~---~~~~~~~i~v~NK  207 (315)
T 1jwy_B          131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEV---DPEGKRTIGVITK  207 (315)
T ss_dssp             CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHH---CSSCSSEEEEEEC
T ss_pred             CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHh---CCCCCcEEEEEcC
Confidence            4688999999743             445566788999999999997532211 1111222222   2347899999999


Q ss_pred             CCCccccccCHHHHHHHHHHcCCeEEEEeCCC------CCCHHHHHHHHHhhcc
Q 030364          125 VDLEEKRKVKNEEGELYAQENGLSFLETSAKS------AHNVNELFYEIGDCTE  172 (178)
Q Consensus       125 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~------~~~i~~~~~~l~~~i~  172 (178)
                      +|+........+.........+..++++|+..      +.|++++++.+.+.+.
T Consensus       208 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~  261 (315)
T 1jwy_B          208 LDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYFK  261 (315)
T ss_dssp             TTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHH
T ss_pred             cccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHHh
Confidence            99875443212211110011225677766544      7899999998877654

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=99.79  E-value=2.7e-20  Score=138.50  Aligned_cols=85  Identities=19%  Similarity=0.061  Sum_probs=47.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEE--E-------------------EeCC-eEEEEEEEeCCC
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQV--L-------------------SLNE-VTIKFDIWDTAG   68 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~--~-------------------~~~~-~~~~~~i~d~~g   68 (178)
                      ++|+++|.+|+|||||+|+|++........|..+.+.....  +                   .+++ ..+.+.+||+||
T Consensus         1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG   80 (397)
T 1wxq_A            1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (397)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence            58999999999999999999987632111111111111111  1                   1122 247899999999


Q ss_pred             chhh----hccc---hhhhcCCcEEEEEEECCCH
Q 030364           69 QERY----HSLA---PMYYRGAAAAVVVYDITSM   95 (178)
Q Consensus        69 ~~~~----~~~~---~~~~~~~d~~i~v~d~~~~   95 (178)
                      ....    ..+.   ..+++.+|++++|+|+++.
T Consensus        81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~  114 (397)
T 1wxq_A           81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK  114 (397)
T ss_dssp             --------------CCCSSTTCSEEEEEEETTCC
T ss_pred             cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence            7532    2222   2456899999999999875

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.79  E-value=2.1e-19  Score=134.20  Aligned_cols=160  Identities=15%  Similarity=0.222  Sum_probs=81.4

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCc--------cCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhc-----
Q 030364            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQ--------ESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHS-----   74 (178)
Q Consensus         8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~-----   74 (178)
                      ...++|+|+|++|+|||||++.|++..+....        .++.............+....+.+||++|...+..     
T Consensus        29 ~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~  108 (418)
T 2qag_C           29 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW  108 (418)
T ss_dssp             CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------C
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhH
Confidence            34678999999999999999999987653111        11111111111122233345789999999754311     


Q ss_pred             --------------------cchhhhcCCcEEEEEEECCCH-hHHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCccccc
Q 030364           75 --------------------LAPMYYRGAAAAVVVYDITSM-DSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEEKRK  132 (178)
Q Consensus        75 --------------------~~~~~~~~~d~~i~v~d~~~~-~s~~~~~-~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~  132 (178)
                                          +...++.++++.+++|..... .++.... .|+..+.    .+.|+++|+||+|+....+
T Consensus       109 ~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~----~~v~iIlVinK~Dll~~~e  184 (418)
T 2qag_C          109 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH----EKVNIIPLIAKADTLTPEE  184 (418)
T ss_dssp             HHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT----TTSEEEEEEESTTSSCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh----ccCcEEEEEEcccCccHHH
Confidence                                112334555544444444322 2333332 4444442    3789999999999876555


Q ss_pred             cCH--HHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHhhc
Q 030364          133 VKN--EEGELYAQENGLSFLETSAKSAHNVNELFYEIGDCT  171 (178)
Q Consensus       133 ~~~--~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  171 (178)
                      +..  .....++..++++++++|++++.+++++|..|.+.+
T Consensus       185 v~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~i  225 (418)
T 2qag_C          185 CQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL  225 (418)
T ss_dssp             HHHHHHHHHHHHHHHTCCCCCCC-----------------C
T ss_pred             HHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhhC
Confidence            544  556777788899999999999999999888887654

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=99.75  E-value=2.2e-18  Score=118.98  Aligned_cols=156  Identities=18%  Similarity=0.156  Sum_probs=94.6

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeee--------------EEEEEEEe----------------CCeE
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAA--------------FFTQVLSL----------------NEVT   58 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~--------------~~~~~~~~----------------~~~~   58 (178)
                      ...+|+++|.+|+|||||+++|...............+              .....+..                ....
T Consensus        29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (221)
T 2wsm_A           29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD  108 (221)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence            35689999999999999999998753211100000000              00111111                1123


Q ss_pred             EEEEEEeCCCchhhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHH
Q 030364           59 IKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEG  138 (178)
Q Consensus        59 ~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~  138 (178)
                      +.+.+||++|.....   ..+....+.+++|+|+.+....  ...+...   .   +.|.++|+||+|+........++.
T Consensus       109 ~d~iiidt~G~~~~~---~~~~~~~~~~i~vvd~~~~~~~--~~~~~~~---~---~~~~iiv~NK~Dl~~~~~~~~~~~  177 (221)
T 2wsm_A          109 CDLLLIENVGNLICP---VDFDLGENYRVVMVSVTEGDDV--VEKHPEI---F---RVADLIVINKVALAEAVGADVEKM  177 (221)
T ss_dssp             CSEEEEEEEEBSSGG---GGCCCSCSEEEEEEEGGGCTTH--HHHCHHH---H---HTCSEEEEECGGGHHHHTCCHHHH
T ss_pred             CCEEEEeCCCCCCCC---chhccccCcEEEEEeCCCcchh--hhhhhhh---h---hcCCEEEEecccCCcchhhHHHHH
Confidence            467799998851100   0111256789999998865321  1111111   1   467899999999865433344555


Q ss_pred             HHHHHHc--CCeEEEEeCCCCCCHHHHHHHHHhhccccc
Q 030364          139 ELYAQEN--GLSFLETSAKSAHNVNELFYEIGDCTECFS  175 (178)
Q Consensus       139 ~~~~~~~--~~~~~~~Sa~~~~~i~~~~~~l~~~i~~~~  175 (178)
                      ....+..  +++++++||++|.|+++++++|.+.+..+.
T Consensus       178 ~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~~  216 (221)
T 2wsm_A          178 KADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVHS  216 (221)
T ss_dssp             HHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC---
T ss_pred             HHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHHH
Confidence            5555543  479999999999999999999999887654

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=99.74  E-value=3.4e-20  Score=128.53  Aligned_cols=155  Identities=19%  Similarity=0.195  Sum_probs=91.0

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEE------------EEEEEeC-CeE-----------------
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFF------------TQVLSLN-EVT-----------------   58 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~------------~~~~~~~-~~~-----------------   58 (178)
                      +..+|+++|.+|||||||+++|....+...+.++...++.            .....++ +..                 
T Consensus        37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~  116 (226)
T 2hf9_A           37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLNL  116 (226)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSCG
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHhc
Confidence            4689999999999999999999987654433333333221            1111111 111                 


Q ss_pred             --EEEEEEeCCCchhhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHH
Q 030364           59 --IKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNE  136 (178)
Q Consensus        59 --~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~  136 (178)
                        ..+.++|++|.-...   ..+-...+..+.++|.........  .+...      .+.|.++|+||+|+........+
T Consensus       117 ~~~d~~~id~~g~i~~~---~s~~~~~~~~~~v~~~~~~~~~~~--~~~~~------~~~~~iiv~NK~Dl~~~~~~~~~  185 (226)
T 2hf9_A          117 DEIDLLFIENVGNLICP---ADFDLGTHKRIVVISTTEGDDTIE--KHPGI------MKTADLIVINKIDLADAVGADIK  185 (226)
T ss_dssp             GGCSEEEEECCSCSSGG---GGCCCSCSEEEEEEEGGGCTTTTT--TCHHH------HTTCSEEEEECGGGHHHHTCCHH
T ss_pred             CCCCEEEEeCCCCccCc---chhhhccCcEEEEEecCcchhhHh--hhhhH------hhcCCEEEEeccccCchhHHHHH
Confidence              123344544421000   001112344566676532111100  00011      14677999999998765444556


Q ss_pred             HHHHHHHHc--CCeEEEEeCCCCCCHHHHHHHHHhhcccc
Q 030364          137 EGELYAQEN--GLSFLETSAKSAHNVNELFYEIGDCTECF  174 (178)
Q Consensus       137 ~~~~~~~~~--~~~~~~~Sa~~~~~i~~~~~~l~~~i~~~  174 (178)
                      +...+++..  +++++++||++|.|++++|++|.+.+..+
T Consensus       186 ~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~  225 (226)
T 2hf9_A          186 KMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKEV  225 (226)
T ss_dssp             HHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHHhh
Confidence            666666543  57999999999999999999999887654

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=99.74  E-value=7e-17  Score=118.25  Aligned_cols=163  Identities=15%  Similarity=0.018  Sum_probs=99.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCe---------------EEEEEEEeCCCchhhh-
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEV---------------TIKFDIWDTAGQERYH-   73 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~d~~g~~~~~-   73 (178)
                      .++|+++|.||+|||||+|+|++........|..+.+.....+.+++.               ...+.+||+||...+. 
T Consensus         2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~   81 (363)
T 1jal_A            2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS   81 (363)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCccccc
Confidence            368999999999999999999987642222221111111122334432               1568899999986543 


Q ss_pred             ---cc---chhhhcCCcEEEEEEECCCH----------hHHHHHHHHHHHH-----------------------------
Q 030364           74 ---SL---APMYYRGAAAAVVVYDITSM----------DSFERAKKWVQEL-----------------------------  108 (178)
Q Consensus        74 ---~~---~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~-----------------------------  108 (178)
                         .+   ...+++.+|++++|+|+++.          +.++.+..+..++                             
T Consensus        82 ~~~gl~~~fl~~ir~ad~il~VvD~~~~~~v~~v~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~k~~k~g~~~~~~~  161 (363)
T 1jal_A           82 KGEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDTINTELALADLDSCERAIQRLQKRAKGGDKEAKFE  161 (363)
T ss_dssp             HHGGGTCCHHHHHHTCSEEEEEEECSCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred             ccchHHHHHHHHHHhcCeEEEEEecCCCCceeeecCCcChHHHHHHHHHHHHhhhHHHHhhHHHHHHHHhhccchhHHHH
Confidence               22   22357899999999999862          2233222111111                             


Q ss_pred             -----------H-------------------Hh-CCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCC-
Q 030364          109 -----------Q-------------------RQ-GNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKS-  156 (178)
Q Consensus       109 -----------~-------------------~~-~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~-  156 (178)
                                 .                   .. ....+|+++++|+.|..-...........++...+++++++||+. 
T Consensus       162 ~~~l~~~~~~L~~~~~~~~~~~~~~e~~~l~~~~llt~KPvi~v~N~~e~~~~~n~~~~~v~~~~~~~~~~~i~~sA~~E  241 (363)
T 1jal_A          162 LSVMEKILPVLENAGMIRSVGLDKEELQAIKSYNFLTLKPTMYIANVNEDGFENNPYLDRVREIAAKEGAVVVPVCAAIE  241 (363)
T ss_dssp             HHHHHHHHHHHHTTCCGGGSCCCHHHHHHHGGGCCSTTSCEEEEEECCTTCSSSCHHHHHHHHHHHHTTCEEEEECHHHH
T ss_pred             HHHHHHHHHHHhcCCCccccCCCHHHHHHHHHhhcccCCcEEEEEecccccccccHHHHHHHHHHHHcCCCEEEechHHH
Confidence                       0                   00 123599999999998642112234556677777899999999542 


Q ss_pred             ---------------------CCCHHHHHHHHHhhcc
Q 030364          157 ---------------------AHNVNELFYEIGDCTE  172 (178)
Q Consensus       157 ---------------------~~~i~~~~~~l~~~i~  172 (178)
                                           +.|++.+.....+.+.
T Consensus       242 ~el~~l~~~e~~~~l~~~g~~~~gl~~li~~~~~~L~  278 (363)
T 1jal_A          242 SEIAELDDEEKVEFLQDLGIEEPGLNRVIRAGYALLN  278 (363)
T ss_dssp             HHGGGSCSSTTHHHHTTSSCCSCTTHHHHHHHHHHTT
T ss_pred             HHHHhcCHHHHHHHHHHhCcccccHHHHHHHHHHHhC
Confidence                                 3677777776665543

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=99.73  E-value=4.8e-18  Score=125.13  Aligned_cols=103  Identities=17%  Similarity=0.136  Sum_probs=69.8

Q ss_pred             EEEEEEeCCCchhhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHH
Q 030364           59 IKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEG  138 (178)
Q Consensus        59 ~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~  138 (178)
                      +.+.||||||...   .....+..+|++++|+|....+....+.        ....+.|.++|+||+|+........ ..
T Consensus       172 ~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~--------~~~~~~p~ivVlNK~Dl~~~~~~~~-~~  239 (355)
T 3p32_A          172 FDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIK--------KGVLELADIVVVNKADGEHHKEARL-AA  239 (355)
T ss_dssp             CCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCC--------TTSGGGCSEEEEECCCGGGHHHHHH-HH
T ss_pred             CCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHH--------HhHhhcCCEEEEECCCCcChhHHHH-HH
Confidence            5788999999532   2233458899999999988654432221        1112468899999999865332211 11


Q ss_pred             HHHHH----------HcCCeEEEEeCCCCCCHHHHHHHHHhhccc
Q 030364          139 ELYAQ----------ENGLSFLETSAKSAHNVNELFYEIGDCTEC  173 (178)
Q Consensus       139 ~~~~~----------~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~~  173 (178)
                      ..+..          .++.+++.+||++|.|+++++++|.+.+..
T Consensus       240 ~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~  284 (355)
T 3p32_A          240 RELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV  284 (355)
T ss_dssp             HHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            12221          125789999999999999999999887654

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=99.72  E-value=2.2e-19  Score=132.18  Aligned_cols=158  Identities=13%  Similarity=0.126  Sum_probs=92.3

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCc----eeeeEE------------------------------------
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQEST----IGAAFF------------------------------------   48 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~----~~~~~~------------------------------------   48 (178)
                      ...+|+|+|.+|+|||||+|+|.+..+.+.....    ++....                                    
T Consensus        30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~  109 (353)
T 2x2e_A           30 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT  109 (353)
T ss_dssp             CCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhc
Confidence            3579999999999999999999988764222111    110000                                    


Q ss_pred             ---------EEEEEe-CCeEEEEEEEeCCCch-------------hhhccchhhhcCCc-EEEEEEECCCHhHHHHHHHH
Q 030364           49 ---------TQVLSL-NEVTIKFDIWDTAGQE-------------RYHSLAPMYYRGAA-AAVVVYDITSMDSFERAKKW  104 (178)
Q Consensus        49 ---------~~~~~~-~~~~~~~~i~d~~g~~-------------~~~~~~~~~~~~~d-~~i~v~d~~~~~s~~~~~~~  104 (178)
                               ...+.+ ......+.+|||||..             .+..+...++..++ +++++.|++....-..   +
T Consensus       110 g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~---~  186 (353)
T 2x2e_A          110 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSD---A  186 (353)
T ss_dssp             TTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCH---H
T ss_pred             ccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhH---H
Confidence                     000000 0012468899999963             33445556666665 4555666654221111   2


Q ss_pred             HHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHH--HHHHcC-CeEEEEeCCCCCCHHHHHHHHHh
Q 030364          105 VQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGEL--YAQENG-LSFLETSAKSAHNVNELFYEIGD  169 (178)
Q Consensus       105 ~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~--~~~~~~-~~~~~~Sa~~~~~i~~~~~~l~~  169 (178)
                      ...+......+.|+++|+||+|+.+...........  +....+ .+++.+||+++.|++++++++.+
T Consensus       187 ~~i~~~~~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~  254 (353)
T 2x2e_A          187 LKVAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA  254 (353)
T ss_dssp             HHHHHHHCTTCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred             HHHHHHhCcCCCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence            222333334578999999999986543311111110  000123 36788999999999999999876

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=99.70  E-value=4.8e-16  Score=120.04  Aligned_cols=115  Identities=17%  Similarity=0.166  Sum_probs=80.0

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCc------------------CCC----CccCceeeeEEEEEEEeCCeEEEEEEEeC
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVKGQ------------------FFD----FQESTIGAAFFTQVLSLNEVTIKFDIWDT   66 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~~~------------------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~d~   66 (178)
                      +..+|+|+|+.++|||||..+|+...                  +..    +.....+.......+.+++  +.++|+||
T Consensus        30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~--~~iNlIDT  107 (548)
T 3vqt_A           30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRD--RVVNLLDT  107 (548)
T ss_dssp             TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETT--EEEEEECC
T ss_pred             ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECC--EEEEEEeC
Confidence            57899999999999999999986311                  000    0111111111222334444  67889999


Q ss_pred             CCchhhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcc
Q 030364           67 AGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEE  129 (178)
Q Consensus        67 ~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~  129 (178)
                      ||+.+|.......++-+|++|+|+|+..+-..... ..++....+   +.|.++++||+|.+.
T Consensus       108 PGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~-~v~~~a~~~---~lp~i~fINK~Dr~~  166 (548)
T 3vqt_A          108 PGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTR-KLMDVCRMR---ATPVMTFVNKMDREA  166 (548)
T ss_dssp             CCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHH-HHHHHHHHT---TCCEEEEEECTTSCC
T ss_pred             CCcHHHHHHHHHHHHhcCceEEEeecCCCcccccH-HHHHHHHHh---CCceEEEEecccchh
Confidence            99999999999999999999999999986433332 333444444   789999999999754

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=99.69  E-value=8.3e-17  Score=129.78  Aligned_cols=119  Identities=19%  Similarity=0.165  Sum_probs=85.4

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHHhCcC--CC--------------CccC--ceeeeEEEEEEE------------eCC
Q 030364            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQF--FD--------------FQES--TIGAAFFTQVLS------------LNE   56 (178)
Q Consensus         7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~~--~~--------------~~~~--~~~~~~~~~~~~------------~~~   56 (178)
                      .....||+|+|++++|||||+++|+....  ..              +..+  |.........+.            .++
T Consensus        16 ~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~   95 (842)
T 1n0u_A           16 VTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDG   95 (842)
T ss_dssp             GGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCS
T ss_pred             cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccC
Confidence            44578999999999999999999987421  00              0011  111111122222            234


Q ss_pred             eEEEEEEEeCCCchhhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcc
Q 030364           57 VTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEE  129 (178)
Q Consensus        57 ~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~  129 (178)
                      ..+.+.+|||||+.+|...+..+++.+|++|+|+|++++.++.....|.... .   .+.|+++++||+|+..
T Consensus        96 ~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~-~---~~~p~ilviNK~D~~~  164 (842)
T 1n0u_A           96 NSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQAL-G---ERIKPVVVINKVDRAL  164 (842)
T ss_dssp             SEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHH-H---TTCEEEEEEECHHHHH
T ss_pred             CCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHH-H---cCCCeEEEEECCCcch
Confidence            5788999999999999999999999999999999999987777655444322 2   4789999999999863

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=99.68  E-value=9.9e-18  Score=123.07  Aligned_cols=102  Identities=13%  Similarity=0.125  Sum_probs=62.8

Q ss_pred             EEEEEEeCCCchhhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHH
Q 030364           59 IKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEG  138 (178)
Q Consensus        59 ~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~  138 (178)
                      +.+.++||+|....   .......+|++++|+|+++++....+..   .+     -+.|.++|+||+|+....... ...
T Consensus       167 ~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i-----l~~~~ivVlNK~Dl~~~~~~~-~~~  234 (349)
T 2www_A          167 YDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR---GI-----IEMADLVAVTKSDGDLIVPAR-RIQ  234 (349)
T ss_dssp             CSEEEEECCCC--C---HHHHHTTCSEEEEEECCC--------------------CCSCSEEEECCCSGGGHHHHH-HHH
T ss_pred             CCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH---HH-----HhcCCEEEEeeecCCCchhHH-HHH
Confidence            46789999996321   2345678999999999987543222211   11     245779999999986422110 111


Q ss_pred             HHHHH----------HcCCeEEEEeCCCCCCHHHHHHHHHhhcc
Q 030364          139 ELYAQ----------ENGLSFLETSAKSAHNVNELFYEIGDCTE  172 (178)
Q Consensus       139 ~~~~~----------~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~  172 (178)
                      ..+..          .++.+++.+||++|.|+++++++|.+.+.
T Consensus       235 ~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~  278 (349)
T 2www_A          235 AEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD  278 (349)
T ss_dssp             HHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence            12211          22468899999999999999999988654

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=99.68  E-value=2.8e-17  Score=127.01  Aligned_cols=120  Identities=18%  Similarity=0.233  Sum_probs=80.1

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHHhCcCC---CCccCceeeeEEEEEEEeC------Ce---------------------
Q 030364            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFF---DFQESTIGAAFFTQVLSLN------EV---------------------   57 (178)
Q Consensus         8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~------~~---------------------   57 (178)
                      ....+|+|+|.+|+|||||+|+|++..+.   ....+++.  .......-+      +.                     
T Consensus        63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~--~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~  140 (550)
T 2qpt_A           63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTD--CFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFL  140 (550)
T ss_dssp             SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCC--SEEEEECCSSSEEECCC------------------CCC
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccc--eEEEEEECCcccccCCceeeecCcccHHHHhhhccccc
Confidence            45789999999999999999999998763   11222221  111000000      00                     


Q ss_pred             ---E---------EEEEEEeCCCchh-----------hhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCC
Q 030364           58 ---T---------IKFDIWDTAGQER-----------YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNP  114 (178)
Q Consensus        58 ---~---------~~~~i~d~~g~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~  114 (178)
                         .         ..+.||||||...           +......++..+|++++|+|+++....+....++..+..   .
T Consensus       141 ~~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~---~  217 (550)
T 2qpt_A          141 NRFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG---H  217 (550)
T ss_dssp             TTEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT---C
T ss_pred             ccceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh---c
Confidence               0         2578999999864           445556678899999999999875444444555554432   3


Q ss_pred             CceEEEEEeCCCCccccc
Q 030364          115 NLIMFLVANKVDLEEKRK  132 (178)
Q Consensus       115 ~~~~ivv~nK~D~~~~~~  132 (178)
                      +.|+++|+||+|+....+
T Consensus       218 ~~pvilVlNK~Dl~~~~e  235 (550)
T 2qpt_A          218 EDKIRVVLNKADMVETQQ  235 (550)
T ss_dssp             GGGEEEEEECGGGSCHHH
T ss_pred             CCCEEEEEECCCccCHHH
Confidence            678999999999875443

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=99.66  E-value=1.1e-15  Score=112.62  Aligned_cols=84  Identities=18%  Similarity=0.139  Sum_probs=53.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCC-------------------eEEEEEEEeCCCchh
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNE-------------------VTIKFDIWDTAGQER   71 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~i~d~~g~~~   71 (178)
                      ++|+++|.||+|||||+|++++........+..+.........+++                   ....+.+||+||...
T Consensus         2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~   81 (368)
T 2dby_A            2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK   81 (368)
T ss_dssp             CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence            6899999999999999999998652111111111111111112221                   235688999999865


Q ss_pred             hhc----c---chhhhcCCcEEEEEEECCC
Q 030364           72 YHS----L---APMYYRGAAAAVVVYDITS   94 (178)
Q Consensus        72 ~~~----~---~~~~~~~~d~~i~v~d~~~   94 (178)
                      ...    +   ....++.+|++++|+|+++
T Consensus        82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~  111 (368)
T 2dby_A           82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFP  111 (368)
T ss_dssp             CCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred             cccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence            421    2   2234789999999999985

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=99.64  E-value=4.5e-15  Score=118.03  Aligned_cols=124  Identities=21%  Similarity=0.153  Sum_probs=82.2

Q ss_pred             CcccCCCCceeEEEEEcCCCCCHHHHHHHHHhCc--------CCCC--------ccCceeeeE--EEEEEEeC-----Ce
Q 030364            1 MARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQ--------FFDF--------QESTIGAAF--FTQVLSLN-----EV   57 (178)
Q Consensus         1 m~~~~~~~~~~~i~v~G~~~~GKStl~~~l~~~~--------~~~~--------~~~~~~~~~--~~~~~~~~-----~~   57 (178)
                      |++..+-++..||+|+|+.++|||||..+|+...        ....        .+...+.+.  ....+.+.     ..
T Consensus         4 m~~~~p~~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~   83 (709)
T 4fn5_A            4 MARTTPINRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYD   83 (709)
T ss_dssp             --CCSCGGGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSC
T ss_pred             CCCCCchHHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCC
Confidence            4444444567899999999999999999987421        1000        011111111  12222232     23


Q ss_pred             EEEEEEEeCCCchhhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCc
Q 030364           58 TIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLE  128 (178)
Q Consensus        58 ~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~  128 (178)
                      .+.++++||||+-+|.......++-+|++|+|+|+..+-.... ...++....+   +.|.++++||+|..
T Consensus        84 ~~~iNlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT-~~v~~~a~~~---~lp~i~~iNKiDr~  150 (709)
T 4fn5_A           84 NYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQS-ETVWRQANKY---GVPRIVYVNKMDRQ  150 (709)
T ss_dssp             CEEEEEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHH-HHHHHHHHHH---TCCEEEEEECSSST
T ss_pred             CEEEEEEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhH-HHHHHHHHHc---CCCeEEEEcccccc
Confidence            5889999999999999999999999999999999997543333 2333444444   68899999999974

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=99.62  E-value=1.2e-14  Score=107.08  Aligned_cols=154  Identities=12%  Similarity=0.071  Sum_probs=97.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhh-------ccchhhhcC
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYH-------SLAPMYYRG   82 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~-------~~~~~~~~~   82 (178)
                      ..+|+++|.||+|||||+|+|++........|.++.+.....+.+++.  .++++|+||...-.       ...-..++.
T Consensus        72 ~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~--~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~  149 (376)
T 4a9a_A           72 VASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGA--KIQMLDLPGIIDGAKDGRGRGKQVIAVART  149 (376)
T ss_dssp             SEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTE--EEEEEECGGGCCC-----CHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCc--EEEEEeCCCccCCchhhhHHHHHHHHHHHh
Confidence            458999999999999999999987654444455666666677777774  56799999963211       112234678


Q ss_pred             CcEEEEEEECCCHhHHHHHHHHHHHHHHh--CCCCceEEEEEeCCCCcc--------ccccCHHHHHHHHHHcCCeEEEE
Q 030364           83 AAAAVVVYDITSMDSFERAKKWVQELQRQ--GNPNLIMFLVANKVDLEE--------KRKVKNEEGELYAQENGLSFLET  152 (178)
Q Consensus        83 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~~~~ivv~nK~D~~~--------~~~~~~~~~~~~~~~~~~~~~~~  152 (178)
                      +|++++|+|++++..  .......++...  .....|.++++||.|...        ......++...+...+.+.--++
T Consensus       150 ad~il~vvD~~~p~~--~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~gi~i~~~~~~~~l~~eeik~il~~~~lt~kpv  227 (376)
T 4a9a_A          150 CNLLFIILDVNKPLH--HKQIIEKELEGVGIRLNKTPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEYRINSAEI  227 (376)
T ss_dssp             CSEEEEEEETTSHHH--HHHHHHHHHHHTTEEETCCCCCEEEEECSSSCEEEEESSCCSSCCHHHHHHHHHHTTCCSEEE
T ss_pred             cCccccccccCccHH--HHHHHHHHHHHhhHhhccCChhhhhhHhhhhhhhhhcchhhhhccHHHHHHHHHHhcccCCCe
Confidence            999999999998643  222222333332  134677889999999642        12344455555555555533333


Q ss_pred             eCCCCCCHHHHHHHH
Q 030364          153 SAKSAHNVNELFYEI  167 (178)
Q Consensus       153 Sa~~~~~i~~~~~~l  167 (178)
                      -...+...+++.+.+
T Consensus       228 ~~~~nv~eddl~d~~  242 (376)
T 4a9a_A          228 AFRCDATVDDLIDVL  242 (376)
T ss_dssp             EECSCCCHHHHHHHH
T ss_pred             eecccCCHHHHHHHH
Confidence            333444555555433

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=99.62  E-value=2.7e-15  Score=105.97  Aligned_cols=111  Identities=15%  Similarity=0.049  Sum_probs=68.5

Q ss_pred             EEEEEEeCCCchhhhccch------hhhcCCcEEEEEEECCCH---hHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcc
Q 030364           59 IKFDIWDTAGQERYHSLAP------MYYRGAAAAVVVYDITSM---DSFERAKKWVQELQRQGNPNLIMFLVANKVDLEE  129 (178)
Q Consensus        59 ~~~~i~d~~g~~~~~~~~~------~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~  129 (178)
                      +.+.+|||||.........      ..+.. +++++++|+...   ..+.....+...  .....+.|+++|+||+|+..
T Consensus       109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~--~~~~~~~p~~iv~NK~D~~~  185 (262)
T 1yrb_A          109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALL--IDLRLGATTIPALNKVDLLS  185 (262)
T ss_dssp             CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHH--HHHHHTSCEEEEECCGGGCC
T ss_pred             CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHH--HhcccCCCeEEEEecccccc
Confidence            5788999999876543322      23456 889999987643   222222111111  11123678999999999865


Q ss_pred             ccccCHHHH-----H----H-----------------HHHHcC--CeEEEEeCCCCCCHHHHHHHHHhhcc
Q 030364          130 KRKVKNEEG-----E----L-----------------YAQENG--LSFLETSAKSAHNVNELFYEIGDCTE  172 (178)
Q Consensus       130 ~~~~~~~~~-----~----~-----------------~~~~~~--~~~~~~Sa~~~~~i~~~~~~l~~~i~  172 (178)
                      ..+......     .    .                 +.+.++  ++++++||+++.|+++++++|.+.+.
T Consensus       186 ~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~  256 (262)
T 1yrb_A          186 EEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYC  256 (262)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhc
Confidence            432110000     0    0                 122333  48999999999999999999988764

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=99.62  E-value=2.1e-16  Score=115.79  Aligned_cols=103  Identities=19%  Similarity=0.112  Sum_probs=64.8

Q ss_pred             EEEEEEeCCCchhhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCH--H
Q 030364           59 IKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKN--E  136 (178)
Q Consensus        59 ~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~--~  136 (178)
                      +.+.+|||||......   .....+|++++|+|++..+.+..+..   ..     .+.|.++|+||+|+.+......  .
T Consensus       149 ~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l~~---~~-----~~~p~ivv~NK~Dl~~~~~~~~~~~  217 (341)
T 2p67_A          149 YDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKK---GL-----MEVADLIVINKDDGDNHTNVAIARH  217 (341)
T ss_dssp             CSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCH---HH-----HHHCSEEEECCCCTTCHHHHHHHHH
T ss_pred             CCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHHHH---hh-----hcccCEEEEECCCCCChHHHHHHHH
Confidence            5688999999754332   24689999999999986543221111   11     1356799999999865322111  1


Q ss_pred             HHHHHHHH-------cCCeEEEEeCCCCCCHHHHHHHHHhhcc
Q 030364          137 EGELYAQE-------NGLSFLETSAKSAHNVNELFYEIGDCTE  172 (178)
Q Consensus       137 ~~~~~~~~-------~~~~~~~~Sa~~~~~i~~~~~~l~~~i~  172 (178)
                      +.......       +..+++++||++|.|+++++++|.+.+.
T Consensus       218 ~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~  260 (341)
T 2p67_A          218 MYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT  260 (341)
T ss_dssp             HHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence            11111111       1457899999999999999999988664

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=99.60  E-value=1.8e-16  Score=124.59  Aligned_cols=116  Identities=16%  Similarity=0.213  Sum_probs=80.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhC--cCCCC--------------ccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhh
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVKG--QFFDF--------------QESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYH   73 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~~--~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~   73 (178)
                      ..||+|+|+.++|||||..+|+..  .....              .+...+.+.......+....+.++++||||+.+|.
T Consensus         2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~   81 (638)
T 3j25_A            2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFL   81 (638)
T ss_dssp             CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTH
T ss_pred             eeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHH
Confidence            468999999999999999998742  11100              00011222222233334445678899999999999


Q ss_pred             ccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcc
Q 030364           74 SLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEE  129 (178)
Q Consensus        74 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~  129 (178)
                      ......++-+|++|+|+|+.++-.... ...++....+   +.|.++++||+|...
T Consensus        82 ~Ev~raL~~~DgavlVVDa~~GV~~qT-~~v~~~a~~~---~lp~i~~INKmDr~~  133 (638)
T 3j25_A           82 AEVYRSLSVLDGAILLISAKDGVQAQT-RILFHALRKM---GIPTIFFINKIDQNG  133 (638)
T ss_dssp             HHHHHHHTTCSEEECCEESSCTTCSHH-HHHHHHHHHH---TCSCEECCEECCSSS
T ss_pred             HHHHHHHHHhCEEEEEEeCCCCCcHHH-HHHHHHHHHc---CCCeEEEEecccccc
Confidence            999999999999999999997543332 3344555554   678899999999754

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=99.58  E-value=3.5e-15  Score=118.12  Aligned_cols=156  Identities=13%  Similarity=0.140  Sum_probs=95.0

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCcCCCCc-cCceeee-----------------------------------------
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQ-ESTIGAA-----------------------------------------   46 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~-~~~~~~~-----------------------------------------   46 (178)
                      ...+|+|+|.+++|||||+|+|++..+.+.. ..++...                                         
T Consensus        50 ~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~  129 (772)
T 3zvr_A           50 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT  129 (772)
T ss_dssp             CCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhc
Confidence            4679999999999999999999987652211 1111000                                         


Q ss_pred             ---------EEEEEEEeCCeEEEEEEEeCCCchh-------------hhccchhhh-cCCcEEEEEEECCCHhHHHHHHH
Q 030364           47 ---------FFTQVLSLNEVTIKFDIWDTAGQER-------------YHSLAPMYY-RGAAAAVVVYDITSMDSFERAKK  103 (178)
Q Consensus        47 ---------~~~~~~~~~~~~~~~~i~d~~g~~~-------------~~~~~~~~~-~~~d~~i~v~d~~~~~s~~~~~~  103 (178)
                               .....+..++ ...+.|+||||...             .......++ ..+|++++|+|+++.........
T Consensus       130 g~~~~is~~~i~l~I~~P~-~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~  208 (772)
T 3zvr_A          130 GTNKGISPVPINLRVYSPH-VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK  208 (772)
T ss_dssp             CSTTCCCSCCEEEEEEETT-CCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHH
T ss_pred             CCCCcccccceEEEEecCC-CCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHH
Confidence                     0011111111 12467999999543             122233333 57899999999986432222222


Q ss_pred             HHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHH----cC-CeEEEEeCCCCCCHHHHHHHHHhh
Q 030364          104 WVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQE----NG-LSFLETSAKSAHNVNELFYEIGDC  170 (178)
Q Consensus       104 ~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~----~~-~~~~~~Sa~~~~~i~~~~~~l~~~  170 (178)
                      ++..+.   ..+.|+++|+||+|+........... . .+.    .+ .+++.+||++|.|++++++++.+.
T Consensus       209 ll~~L~---~~g~pvIlVlNKiDlv~~~~~~~~il-~-~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e  275 (772)
T 3zvr_A          209 IAKEVD---PQGQRTIGVITKLDLMDEGTDARDVL-E-NKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE  275 (772)
T ss_dssp             HHHHHC---TTCSSEEEEEECTTSSCTTCCSHHHH-T-TCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred             HHHHHH---hcCCCEEEEEeCcccCCcchhhHHHH-H-HHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence            233332   34789999999999875443322111 1 111    12 367889999999999999998863

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=99.57  E-value=9.9e-15  Score=105.17  Aligned_cols=101  Identities=18%  Similarity=0.141  Sum_probs=81.1

Q ss_pred             chhhhccchhhhcCCcEEEEEEECCCHh-HHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccC-HHHHHHHHHHcC
Q 030364           69 QERYHSLAPMYYRGAAAAVVVYDITSMD-SFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVK-NEEGELYAQENG  146 (178)
Q Consensus        69 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~-~~~~~~~~~~~~  146 (178)
                      ++.+..+...+++++|++++|+|+++++ ++..+..|+..+..   .+.|+++|+||+|+.+..++. .++...+.+..+
T Consensus        66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~---~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g  142 (302)
T 2yv5_A           66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY---FKVEPVIVFNKIDLLNEEEKKELERWISIYRDAG  142 (302)
T ss_dssp             CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH---TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTT
T ss_pred             CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh---CCCCEEEEEEcccCCCccccHHHHHHHHHHHHCC
Confidence            4566777788999999999999999986 88888888886654   478999999999997544322 234455666778


Q ss_pred             CeEEEEeCCCCCCHHHHHHHHHhhcc
Q 030364          147 LSFLETSAKSAHNVNELFYEIGDCTE  172 (178)
Q Consensus       147 ~~~~~~Sa~~~~~i~~~~~~l~~~i~  172 (178)
                      ++++++||++|.|++++++.+...+.
T Consensus       143 ~~~~~~SA~~g~gi~~L~~~l~G~i~  168 (302)
T 2yv5_A          143 YDVLKVSAKTGEGIDELVDYLEGFIC  168 (302)
T ss_dssp             CEEEECCTTTCTTHHHHHHHTTTCEE
T ss_pred             CeEEEEECCCCCCHHHHHhhccCcEE
Confidence            99999999999999999998876544

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=99.55  E-value=3.9e-15  Score=100.09  Aligned_cols=106  Identities=6%  Similarity=-0.118  Sum_probs=70.2

Q ss_pred             CCchhhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHH---H-HhC-CCCceEEEEEeCC-CCccccccCHHHHHH
Q 030364           67 AGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQEL---Q-RQG-NPNLIMFLVANKV-DLEEKRKVKNEEGEL  140 (178)
Q Consensus        67 ~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~---~-~~~-~~~~~~ivv~nK~-D~~~~~~~~~~~~~~  140 (178)
                      +|+...+..|.+|+.++|++|||+|.+|++-++ .+..+..+   . ... ..+.|++|++||. |++.+  ....+...
T Consensus       110 GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~A--ms~~EI~e  186 (227)
T 3l82_B          110 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR--MPCFYLAH  186 (227)
T ss_dssp             -------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCB--CCHHHHHH
T ss_pred             CcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCC--CCHHHHHH
Confidence            378889999999999999999999999875443 33333222   2 221 3688999999995 67543  23333222


Q ss_pred             HHH----HcCCeEEEEeCCCCCCHHHHHHHHHhhccccc
Q 030364          141 YAQ----ENGLSFLETSAKSAHNVNELFYEIGDCTECFS  175 (178)
Q Consensus       141 ~~~----~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~~~~  175 (178)
                      ...    .+.+.+..|||++|+|+.+.++||.+.+...+
T Consensus       187 ~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~k~  225 (227)
T 3l82_B          187 ELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESKR  225 (227)
T ss_dssp             HTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTTTC-
T ss_pred             HcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHHhhc
Confidence            211    14578999999999999999999999987654

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=99.54  E-value=1.6e-14  Score=105.47  Aligned_cols=103  Identities=15%  Similarity=0.115  Sum_probs=62.7

Q ss_pred             EEEEEEeCCCchhhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHH
Q 030364           59 IKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEG  138 (178)
Q Consensus        59 ~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~  138 (178)
                      +.+.|+||+|.....   ......+|.+++++|+...+....+...   +.     +.+.++++||+|+...........
T Consensus       148 ~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~~~---i~-----~~~~ivvlNK~Dl~~~~~~s~~~~  216 (337)
T 2qm8_A          148 FDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKKG---IF-----ELADMIAVNKADDGDGERRASAAA  216 (337)
T ss_dssp             CCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCTT---HH-----HHCSEEEEECCSTTCCHHHHHHHH
T ss_pred             CCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHHHH---Hh-----ccccEEEEEchhccCchhHHHHHH
Confidence            567899999974321   2345789999999998754322111111   11     234577789999643222111122


Q ss_pred             HHHHHH----------cCCeEEEEeCCCCCCHHHHHHHHHhhcc
Q 030364          139 ELYAQE----------NGLSFLETSAKSAHNVNELFYEIGDCTE  172 (178)
Q Consensus       139 ~~~~~~----------~~~~~~~~Sa~~~~~i~~~~~~l~~~i~  172 (178)
                      ..+...          +..+++.+||+++.|++++++.|.+...
T Consensus       217 ~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~  260 (337)
T 2qm8_A          217 SEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS  260 (337)
T ss_dssp             HHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            222221          2457899999999999999999988654

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=99.45  E-value=8.5e-14  Score=102.97  Aligned_cols=88  Identities=10%  Similarity=-0.008  Sum_probs=50.9

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCe---------------EEEEEEEeCCCchhhh
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEV---------------TIKFDIWDTAGQERYH   73 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~d~~g~~~~~   73 (178)
                      ..++|+++|.+|+|||||+|+|++........|..+.+.....+.+++.               ...+.+||+||.....
T Consensus        21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~a  100 (396)
T 2ohf_A           21 TSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGA  100 (396)
T ss_dssp             SCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-----
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccccc
Confidence            4679999999999999999999987653333333333333334444432               2358899999986544


Q ss_pred             c-------cchhhhcCCcEEEEEEECCCHh
Q 030364           74 S-------LAPMYYRGAAAAVVVYDITSMD   96 (178)
Q Consensus        74 ~-------~~~~~~~~~d~~i~v~d~~~~~   96 (178)
                      .       .+..+++.+|++++|+|+++.+
T Consensus       101 s~~~glg~~~l~~ir~aD~Il~VvD~~~~~  130 (396)
T 2ohf_A          101 HNGQGLGNAFLSHISACDGIFHLTRAFEDD  130 (396)
T ss_dssp             ------CCHHHHHHHTSSSEEEEEEC----
T ss_pred             chhhHHHHHHHHHHHhcCeEEEEEecCCCc
Confidence            3       3456788999999999998643

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=99.44  E-value=9.8e-14  Score=97.68  Aligned_cols=108  Identities=6%  Similarity=-0.133  Sum_probs=74.1

Q ss_pred             CCCchhhhccchhhhcCCcEEEEEEECCCHhHHH---HHHHHHHHHHHhC-CCCceEEEEEeC-CCCccccccCHHHHHH
Q 030364           66 TAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFE---RAKKWVQELQRQG-NPNLIMFLVANK-VDLEEKRKVKNEEGEL  140 (178)
Q Consensus        66 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~---~~~~~~~~~~~~~-~~~~~~ivv~nK-~D~~~~~~~~~~~~~~  140 (178)
                      .+|+...+..|.+|+.++|++|||+|.+|++-++   ++..+...+.... ..+.|++|++|| .|++.+.  ...+..+
T Consensus       194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Am--s~~EI~e  271 (312)
T 3l2o_B          194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRM--PCFYLAH  271 (312)
T ss_dssp             ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBC--CHHHHHH
T ss_pred             CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCC--CHHHHHH
Confidence            4577888999999999999999999999876443   2222222232221 368999999996 6876533  3333222


Q ss_pred             HHH----HcCCeEEEEeCCCCCCHHHHHHHHHhhccccc
Q 030364          141 YAQ----ENGLSFLETSAKSAHNVNELFYEIGDCTECFS  175 (178)
Q Consensus       141 ~~~----~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~~~~  175 (178)
                      ...    ...+.+..|||++|+|+.+.++||.+.+...+
T Consensus       272 ~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~~k~  310 (312)
T 3l2o_B          272 ELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESKR  310 (312)
T ss_dssp             HTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSCC--
T ss_pred             HcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHHhhc
Confidence            211    14568999999999999999999999987654

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=99.43  E-value=3.9e-12  Score=94.27  Aligned_cols=86  Identities=13%  Similarity=0.046  Sum_probs=57.7

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCcC-CCCccCceeeeEEEEEEEeCCe---------------EEEEEEEeCCCchhh
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVKGQF-FDFQESTIGAAFFTQVLSLNEV---------------TIKFDIWDTAGQERY   72 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~d~~g~~~~   72 (178)
                      ...++.++|++|+|||||+|.|++... .....|..+.......+.+++.               ...+.+||+||....
T Consensus        19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~   98 (392)
T 1ni3_A           19 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKG   98 (392)
T ss_dssp             SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccC
Confidence            467999999999999999999998665 3333333333333334444431               135789999995322


Q ss_pred             -------hccchhhhcCCcEEEEEEECCC
Q 030364           73 -------HSLAPMYYRGAAAAVVVYDITS   94 (178)
Q Consensus        73 -------~~~~~~~~~~~d~~i~v~d~~~   94 (178)
                             .......++.+|++++|+|+.+
T Consensus        99 ~s~~e~L~~~fl~~ir~~d~il~Vvd~~~  127 (392)
T 1ni3_A           99 ASTGVGLGNAFLSHVRAVDAIYQVVRAFD  127 (392)
T ss_dssp             CCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence                   1123445688999999999863

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=99.14  E-value=6.3e-12  Score=92.92  Aligned_cols=143  Identities=15%  Similarity=0.110  Sum_probs=82.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCc----CCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhc----c---chh
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVKGQ----FFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHS----L---APM   78 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~----~---~~~   78 (178)
                      ..+|+++|.+|+|||||+|+|++..    .........+++.......++..   +.++||||......    +   ...
T Consensus       162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l~  238 (369)
T 3ec1_A          162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLESG---ATLYDTPGIINHHQMAHFVDARDLK  238 (369)
T ss_dssp             TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECSTT---CEEEECCSCCCCSSGGGGSCTTTHH
T ss_pred             cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeCCC---eEEEeCCCcCcHHHHHHHHhHHHHH
Confidence            3579999999999999999999751    11111222233333444444442   67999999632221    1   111


Q ss_pred             hh---cCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCC
Q 030364           79 YY---RGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAK  155 (178)
Q Consensus        79 ~~---~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  155 (178)
                      .+   +..+.++++++......+..+.    .+......+.|+++++||.|..+..... .....+.+..+..+...++.
T Consensus       239 ~~~~~~~i~~~~~~l~~~~~~~~g~l~----~l~~l~~~~~~~~~v~~k~d~~~~~~~~-~~~~~~~~~~g~~l~p~~~~  313 (369)
T 3ec1_A          239 IITPKREIHPRVYQLNEGQTLFFGGLA----RLDYIKGGRRSFVCYMANELTVHRTKLE-KADSLYANQLGELLSPPSKR  313 (369)
T ss_dssp             HHSCSSCCCCEEEEECTTEEEEETTTE----EEEEEESSSEEEEEEECTTSCEEEEEGG-GHHHHHHHHBTTTBCSSCGG
T ss_pred             HHhcccccCceEEEEcCCceEEECCEE----EEEEccCCCceEEEEecCCcccccccHH-HHHHHHHHhcCCccCCCCch
Confidence            22   6678999999984321111110    0111223578999999999987655443 34445556666666555554


Q ss_pred             CCCCH
Q 030364          156 SAHNV  160 (178)
Q Consensus       156 ~~~~i  160 (178)
                      ...++
T Consensus       314 ~~~~~  318 (369)
T 3ec1_A          314 YAAEF  318 (369)
T ss_dssp             GTTTC
T ss_pred             hhhhc
Confidence            44433

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=99.11  E-value=3.1e-10  Score=83.82  Aligned_cols=97  Identities=26%  Similarity=0.308  Sum_probs=72.5

Q ss_pred             CchhhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHH----HHH
Q 030364           68 GQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGEL----YAQ  143 (178)
Q Consensus        68 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~----~~~  143 (178)
                      ..+.|......+.+.++++++|+|+++++     ..|...+.+. ..+.|+++|+||+|+.... ...+....    +++
T Consensus        55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~-~~~~p~ilV~NK~DL~~~~-~~~~~~~~~l~~~~~  127 (368)
T 3h2y_A           55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRF-VGNNKVLLVGNKADLIPKS-VKHDKVKHWMRYSAK  127 (368)
T ss_dssp             -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHH-SSSSCEEEEEECGGGSCTT-SCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHH-hCCCcEEEEEEChhcCCcc-cCHHHHHHHHHHHHH
Confidence            45788888889999999999999999864     3344455544 2478999999999986533 22233333    355


Q ss_pred             HcCC---eEEEEeCCCCCCHHHHHHHHHhhc
Q 030364          144 ENGL---SFLETSAKSAHNVNELFYEIGDCT  171 (178)
Q Consensus       144 ~~~~---~~~~~Sa~~~~~i~~~~~~l~~~i  171 (178)
                      ..++   +++.+||++|.|+++++++|.+..
T Consensus       128 ~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~  158 (368)
T 3h2y_A          128 QLGLKPEDVFLISAAKGQGIAELADAIEYYR  158 (368)
T ss_dssp             HTTCCCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             HcCCCcccEEEEeCCCCcCHHHHHhhhhhhc
Confidence            6677   899999999999999999997644

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=99.10  E-value=3e-10  Score=86.78  Aligned_cols=151  Identities=15%  Similarity=0.129  Sum_probs=84.1

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHH------hCcCC----CCccCce-----------eeeEEEEEEE-------------e
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFV------KGQFF----DFQESTI-----------GAAFFTQVLS-------------L   54 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~------~~~~~----~~~~~~~-----------~~~~~~~~~~-------------~   54 (178)
                      +...|+++|.+|+||||+++.|.      +.+..    ..+.+..           +.+.......             .
T Consensus       100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~  179 (504)
T 2j37_W          100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF  179 (504)
T ss_dssp             --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence            45689999999999999999998      32210    0001100           0111110000             0


Q ss_pred             CCeEEEEEEEeCCCchhhhc-cc---hhh--hcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceE-EEEEeCCCC
Q 030364           55 NEVTIKFDIWDTAGQERYHS-LA---PMY--YRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIM-FLVANKVDL  127 (178)
Q Consensus        55 ~~~~~~~~i~d~~g~~~~~~-~~---~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-ivv~nK~D~  127 (178)
                      ....+.+.|+||||...... ..   ...  ...+|.+++|+|+.......   .....+..    ..|+ .+|+||.|.
T Consensus       180 ~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~---~~a~~~~~----~~~i~gvVlNK~D~  252 (504)
T 2j37_W          180 KNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACE---AQAKAFKD----KVDVASVIVTKLDG  252 (504)
T ss_dssp             HHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHH---HHHHHHHH----HHCCCCEEEECTTS
T ss_pred             HHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHH---HHHHHHHh----hcCceEEEEeCCcc
Confidence            00235788999999743211 11   111  23789999999998754311   12222322    1454 889999997


Q ss_pred             ccccccCHHHHHHHHHHcCCeE------------------EEEeCCCCCC-HHHHHHHHHhh
Q 030364          128 EEKRKVKNEEGELYAQENGLSF------------------LETSAKSAHN-VNELFYEIGDC  170 (178)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~------------------~~~Sa~~~~~-i~~~~~~l~~~  170 (178)
                      .....    .........+.|+                  +.+|+..|.| +.++++++.+.
T Consensus       253 ~~~~g----~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~  310 (504)
T 2j37_W          253 HAKGG----GALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL  310 (504)
T ss_dssp             CCCCT----HHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred             ccchH----HHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence            53211    1122223344443                  3468999999 99999999865

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=99.09  E-value=4.3e-12  Score=93.74  Aligned_cols=136  Identities=14%  Similarity=0.116  Sum_probs=76.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCcCC-----CCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhc----cchh--
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVKGQFF-----DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHS----LAPM--   78 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~----~~~~--   78 (178)
                      ..+|+++|.+|+|||||+|+|++....     ....+..+++.......++..   +.++||||......    +...  
T Consensus       160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l  236 (368)
T 3h2y_A          160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEE---SSLYDTPGIINHHQMAHYVGKQSL  236 (368)
T ss_dssp             TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSS---CEEEECCCBCCTTSGGGGSCHHHH
T ss_pred             cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCC---eEEEeCCCcCcHHHHHHHhhHHHH
Confidence            358999999999999999999986321     112333344444444444443   67999999643221    1111  


Q ss_pred             --h--hcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEe
Q 030364           79 --Y--YRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETS  153 (178)
Q Consensus        79 --~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S  153 (178)
                        +  ....+.++++++......+..+.    .+......+.|+++++||+|..+.... ......+.+..+..+.+.+
T Consensus       237 ~~~~~~~~i~~~~~~l~~~~~~~~g~l~----~~d~l~~~~~~~~~v~nk~d~~~~~~~-~~~~~~~~~~~g~~l~p~~  310 (368)
T 3h2y_A          237 KLITPTKEIKPMVFQLNEEQTLFFSGLA----RFDYVSGGRRAFTCHFSNRLTIHRTKL-EKADELYKNHAGDLLSPPT  310 (368)
T ss_dssp             HHHSCSSCCCCEEEEECTTEEEEETTTE----EEEEEESSSEEEEEEECTTSCEEEEEH-HHHHHHHHHHBTTTBCSSC
T ss_pred             HHhccccccCceEEEEcCCCEEEEcceE----EEEEecCCCceEEEEecCccccccccH-HHHHHHHHHHhCCccCCCc
Confidence              1  25678888888874211111110    011112347899999999998765443 2333445555555444433

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.07  E-value=4.3e-10  Score=84.00  Aligned_cols=140  Identities=14%  Similarity=0.140  Sum_probs=69.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCcCCCCc----cCceeeeEEEEEEEeCCeEEEEEEEeCCCchhh-------------
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQ----ESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERY-------------   72 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~-------------   72 (178)
                      .++++|+|++|+|||||++.|.+..+....    .+..............+-...+.++|++|....             
T Consensus        42 i~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~  121 (427)
T 2qag_B           42 CFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEF  121 (427)
T ss_dssp             EEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHH
Confidence            457999999999999999999986542211    111111111111122222346789999875321             


Q ss_pred             -hccchh-------------hhcCC--cE-EEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCH
Q 030364           73 -HSLAPM-------------YYRGA--AA-AVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKN  135 (178)
Q Consensus        73 -~~~~~~-------------~~~~~--d~-~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~  135 (178)
                       ...+..             ....+  |+ +.++.|...+-+...    +..+... ..+.|+++|.||+|...+.++..
T Consensus       122 i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D----ieilk~L-~~~~~vI~Vi~KtD~Lt~~E~~~  196 (427)
T 2qag_B          122 IDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD----LVTMKKL-DSKVNIIPIIAKADAISKSELTK  196 (427)
T ss_dssp             HHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH----HHHHHHT-CSCSEEEEEESCGGGSCHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH----HHHHHHH-hhCCCEEEEEcchhccchHHHHH
Confidence             000101             11122  23 555566654332222    1222222 25789999999999765443321


Q ss_pred             H--HHHHHHHHcCCeEEEEeC
Q 030364          136 E--EGELYAQENGLSFLETSA  154 (178)
Q Consensus       136 ~--~~~~~~~~~~~~~~~~Sa  154 (178)
                      .  ....-....+++++.+|.
T Consensus       197 l~~~I~~~L~~~gi~I~~is~  217 (427)
T 2qag_B          197 FKIKITSELVSNGVQIYQFPT  217 (427)
T ss_dssp             HHHHHHHHHBTTBCCCCCCC-
T ss_pred             HHHHHHHHHHHcCCcEEecCC
Confidence            1  112112345677777774

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=99.01  E-value=8.1e-10  Score=78.26  Aligned_cols=137  Identities=17%  Similarity=0.195  Sum_probs=68.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCcCCCCc---------cCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhc------
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQ---------ESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHS------   74 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~------   74 (178)
                      .++++++|++|+|||||++.|++......-         ..+...........-.+-...+.++|++|......      
T Consensus         2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~   81 (270)
T 3sop_A            2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE   81 (270)
T ss_dssp             EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence            578999999999999999999974332110         00000010011111111123578999997421100      


Q ss_pred             ------------c----------chhhhcCCcEEEEEEECC-CHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccc
Q 030364           75 ------------L----------APMYYRGAAAAVVVYDIT-SMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR  131 (178)
Q Consensus        75 ------------~----------~~~~~~~~d~~i~v~d~~-~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~  131 (178)
                                  .          ....+..+++.++++|.. .+-.... ...+..+..   . .++++|++|+|.....
T Consensus        82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD-~~~l~~L~~---~-~~vI~Vi~K~D~lt~~  156 (270)
T 3sop_A           82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD-LEFMKHLSK---V-VNIIPVIAKADTMTLE  156 (270)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH-HHHHHHHHT---T-SEEEEEETTGGGSCHH
T ss_pred             HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH-HHHHHHHHh---c-CcEEEEEeccccCCHH
Confidence                        0          011123357888888855 2211111 222333322   2 7899999999976543


Q ss_pred             ccCH--HHHHHHHHHcCCeEEE
Q 030364          132 KVKN--EEGELYAQENGLSFLE  151 (178)
Q Consensus       132 ~~~~--~~~~~~~~~~~~~~~~  151 (178)
                      +...  .........+++++++
T Consensus       157 e~~~~k~~i~~~l~~~~i~i~~  178 (270)
T 3sop_A          157 EKSEFKQRVRKELEVNGIEFYP  178 (270)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCSS
T ss_pred             HHHHHHHHHHHHHHHcCccccC
Confidence            3221  1222234456666654

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=99.00  E-value=1.1e-08  Score=76.44  Aligned_cols=157  Identities=13%  Similarity=0.134  Sum_probs=83.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCce-eeeE--EEEEEEeCCeEEEEEEEeCCCchhhhccchhh-----hc
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTI-GAAF--FTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY-----YR   81 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~-----~~   81 (178)
                      ...++++|++|+|||||+|.+.+-.....-.-.. +.+.  ......... .-.+.+||++|..........+     +.
T Consensus        69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~-~~~ltv~D~~g~~~~~~~~~~~L~~~~L~  147 (413)
T 1tq4_A           69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPN-IPNVVFWDLPGIGSTNFPPDTYLEKMKFY  147 (413)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSS-CTTEEEEECCCGGGSSCCHHHHHHHTTGG
T ss_pred             CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccc-cCCeeehHhhcccchHHHHHHHHHHcCCC
Confidence            4489999999999999999999743221111111 1110  011111111 1146799999864221111111     23


Q ss_pred             CCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcc-------ccccCHHH----HHHHH----HHcC
Q 030364           82 GAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEE-------KRKVKNEE----GELYA----QENG  146 (178)
Q Consensus        82 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~-------~~~~~~~~----~~~~~----~~~~  146 (178)
                      ..+..++ ++.....  ..-..+...+..   .+.|+++|.||.|+.-       -......+    ...+.    ...+
T Consensus       148 ~~~~~~~-lS~G~~~--kqrv~la~aL~~---~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g  221 (413)
T 1tq4_A          148 EYDFFII-ISATRFK--KNDIDIAKAISM---MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENG  221 (413)
T ss_dssp             GCSEEEE-EESSCCC--HHHHHHHHHHHH---TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTT
T ss_pred             ccCCeEE-eCCCCcc--HHHHHHHHHHHh---cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence            3455554 7776311  111122233333   2679999999999631       11112222    22222    1222


Q ss_pred             ---CeEEEEeC--CCCCCHHHHHHHHHhhccc
Q 030364          147 ---LSFLETSA--KSAHNVNELFYEIGDCTEC  173 (178)
Q Consensus       147 ---~~~~~~Sa--~~~~~i~~~~~~l~~~i~~  173 (178)
                         ..++.+|+  ..+.|++++.+.|.+.+..
T Consensus       222 ~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpe  253 (413)
T 1tq4_A          222 IAEPPIFLLSNKNVCHYDFPVLMDKLISDLPI  253 (413)
T ss_dssp             CSSCCEEECCTTCTTSTTHHHHHHHHHHHSCG
T ss_pred             CCCCcEEEEecCcCCccCHHHHHHHHHHhCcc
Confidence               36788999  5666799999999887754

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.98  E-value=7.3e-10  Score=78.99  Aligned_cols=100  Identities=11%  Similarity=0.040  Sum_probs=68.9

Q ss_pred             EEeCCCch-hhhccchhhhcCCcEEEEEEECCCHhHHH--HHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHH
Q 030364           63 IWDTAGQE-RYHSLAPMYYRGAAAAVVVYDITSMDSFE--RAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGE  139 (178)
Q Consensus        63 i~d~~g~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~  139 (178)
                      +-..||+. .........+..+|+++.|+|+.++.+..  .+..++        .++|.++|+||+|+.....  .+...
T Consensus         3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--------~~kp~ilVlNK~DL~~~~~--~~~~~   72 (282)
T 1puj_A            3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--------KNKPRIMLLNKADKADAAV--TQQWK   72 (282)
T ss_dssp             ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--------SSSCEEEEEECGGGSCHHH--HHHHH
T ss_pred             CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--------CCCCEEEEEECcccCCHHH--HHHHH
Confidence            34578875 44555667789999999999999987654  233332        4789999999999975321  12223


Q ss_pred             HHHHHcCCeEEEEeCCCCCCHHHHHHHHHhhcc
Q 030364          140 LYAQENGLSFLETSAKSAHNVNELFYEIGDCTE  172 (178)
Q Consensus       140 ~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~  172 (178)
                      .+.+..+++++.+||+++.|++++++.+.+.+.
T Consensus        73 ~~~~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~  105 (282)
T 1puj_A           73 EHFENQGIRSLSINSVNGQGLNQIVPASKEILQ  105 (282)
T ss_dssp             HHHHTTTCCEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred             HHHHhcCCcEEEEECCCcccHHHHHHHHHHHHH
Confidence            344445789999999999999999998877654

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=98.95  E-value=6.4e-10  Score=82.21  Aligned_cols=98  Identities=23%  Similarity=0.260  Sum_probs=70.9

Q ss_pred             CchhhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHH----HHH
Q 030364           68 GQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGEL----YAQ  143 (178)
Q Consensus        68 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~----~~~  143 (178)
                      .++.|......++..++++++|+|++++++     .|...+.+. ..+.|+++|+||+|+.... ...+....    ..+
T Consensus        57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~-l~~~piilV~NK~DLl~~~-~~~~~~~~~l~~~~~  129 (369)
T 3ec1_A           57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRF-AADNPILLVGNKADLLPRS-VKYPKLLRWMRRMAE  129 (369)
T ss_dssp             --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHH-CTTSCEEEEEECGGGSCTT-CCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHH-hCCCCEEEEEEChhcCCCc-cCHHHHHHHHHHHHH
Confidence            467888888888899999999999999763     233333333 2478999999999986532 22233333    345


Q ss_pred             HcCC---eEEEEeCCCCCCHHHHHHHHHhhcc
Q 030364          144 ENGL---SFLETSAKSAHNVNELFYEIGDCTE  172 (178)
Q Consensus       144 ~~~~---~~~~~Sa~~~~~i~~~~~~l~~~i~  172 (178)
                      ..++   +++.+||++|.|++++++.|.+...
T Consensus       130 ~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~~  161 (369)
T 3ec1_A          130 ELGLCPVDVCLVSAAKGIGMAKVMEAINRYRE  161 (369)
T ss_dssp             TTTCCCSEEEECBTTTTBTHHHHHHHHHHHHT
T ss_pred             HcCCCcccEEEEECCCCCCHHHHHHHHHhhcc
Confidence            5666   7899999999999999999976543

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.81  E-value=4.8e-09  Score=74.76  Aligned_cols=59  Identities=19%  Similarity=0.318  Sum_probs=36.0

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCch
Q 030364            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE   70 (178)
Q Consensus         8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~   70 (178)
                      ...++++++|.||+|||||+|+|.+..... ..+..+++.....+..+.   .+.++||||..
T Consensus       118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~-~~~~~g~T~~~~~~~~~~---~~~l~DtpG~~  176 (282)
T 1puj_A          118 PRAIRALIIGIPNVGKSTLINRLAKKNIAK-TGDRPGITTSQQWVKVGK---ELELLDTPGIL  176 (282)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTSCCC-------------CCEEETT---TEEEEECCCCC
T ss_pred             CCCceEEEEecCCCchHHHHHHHhcCceee-cCCCCCeeeeeEEEEeCC---CEEEEECcCcC
Confidence            457899999999999999999999765322 223333333222233332   46799999963

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.74  E-value=3.4e-09  Score=74.77  Aligned_cols=57  Identities=21%  Similarity=0.251  Sum_probs=35.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchh
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER   71 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~   71 (178)
                      ++++++|.+|+|||||+|+|.+..... ..++.+.+.....+..+.   .+.+|||||...
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~~~~-~~~~~g~T~~~~~~~~~~---~~~l~DtpG~~~  156 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKRASS-VGAQPGITKGIQWFSLEN---GVKILDTPGILY  156 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEECTT---SCEEESSCEECC
T ss_pred             hheEEeCCCCCCHHHHHHHHhcccccc-cCCCCCCccceEEEEeCC---CEEEEECCCccc
Confidence            699999999999999999999766532 233333333222223222   467999999743

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=98.58  E-value=1.5e-07  Score=70.70  Aligned_cols=91  Identities=14%  Similarity=0.095  Sum_probs=53.3

Q ss_pred             EEEEEEeCCCchhhhc-----cc-hhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccc
Q 030364           59 IKFDIWDTAGQERYHS-----LA-PMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRK  132 (178)
Q Consensus        59 ~~~~i~d~~g~~~~~~-----~~-~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~  132 (178)
                      +.+.|+||+|......     +. ......+|.+++|+|+........   ....+...   -.+..||+||.|....  
T Consensus       183 ~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~---~a~~f~~~---~~i~gVIlTKlD~~~~--  254 (443)
T 3dm5_A          183 VDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYN---QALAFKEA---TPIGSIIVTKLDGSAK--  254 (443)
T ss_dssp             CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHH---HHHHHHHS---CTTEEEEEECCSSCSS--
T ss_pred             CCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHH---HHHHHHhh---CCCeEEEEECCCCccc--
Confidence            6778999999532111     11 112345789999999987543322   22333322   2345789999997532  


Q ss_pred             cCHHHHHHHHHHcCCeEEEEeCCCCCCHH
Q 030364          133 VKNEEGELYAQENGLSFLETSAKSAHNVN  161 (178)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  161 (178)
                        .-.........+.|+..++.  |++++
T Consensus       255 --gG~~ls~~~~~g~PI~fig~--Ge~vd  279 (443)
T 3dm5_A          255 --GGGALSAVAATGAPIKFIGT--GEKID  279 (443)
T ss_dssp             --HHHHHHHHHTTCCCEEEEEC--SSSTT
T ss_pred             --ccHHHHHHHHHCCCEEEEEc--CCChH
Confidence              12334444567888877775  55543

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.50  E-value=4.5e-08  Score=69.02  Aligned_cols=94  Identities=16%  Similarity=0.062  Sum_probs=62.0

Q ss_pred             CCCchh-hhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHH
Q 030364           66 TAGQER-YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQE  144 (178)
Q Consensus        66 ~~g~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~  144 (178)
                      .||+.. ........+..+|+++.|+|+.++.+.....  +. +    . ++|.++|+||+|+.+...  .+....+.+.
T Consensus         4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~--l~-l----l-~k~~iivlNK~DL~~~~~--~~~~~~~~~~   73 (262)
T 3cnl_A            4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYG--VD-F----S-RKETIILLNKVDIADEKT--TKKWVEFFKK   73 (262)
T ss_dssp             -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTT--SC-C----T-TSEEEEEEECGGGSCHHH--HHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChH--HH-h----c-CCCcEEEEECccCCCHHH--HHHHHHHHHH
Confidence            466642 2234456789999999999999876654310  01 1    1 789999999999975322  1222334445


Q ss_pred             cCCeEEEEeCCCCCCHHHHHHHHHhh
Q 030364          145 NGLSFLETSAKSAHNVNELFYEIGDC  170 (178)
Q Consensus       145 ~~~~~~~~Sa~~~~~i~~~~~~l~~~  170 (178)
                      .+.++ .+||+++.|+++++++|.+.
T Consensus        74 ~g~~v-~iSa~~~~gi~~L~~~l~~~   98 (262)
T 3cnl_A           74 QGKRV-ITTHKGEPRKVLLKKLSFDR   98 (262)
T ss_dssp             TTCCE-EECCTTSCHHHHHHHHCCCT
T ss_pred             cCCeE-EEECCCCcCHHHHHHHHHHh
Confidence            67888 99999999999999877654

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=98.49  E-value=6.4e-08  Score=72.85  Aligned_cols=84  Identities=15%  Similarity=0.061  Sum_probs=46.9

Q ss_pred             EEEEEEEeCCCchhhhc-----cc-hhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCc-e-EEEEEeCCCCcc
Q 030364           58 TIKFDIWDTAGQERYHS-----LA-PMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNL-I-MFLVANKVDLEE  129 (178)
Q Consensus        58 ~~~~~i~d~~g~~~~~~-----~~-~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-~-~ivv~nK~D~~~  129 (178)
                      .+.+.++||||......     +. ...+..+|.+++|+|+.....   .......+.    ... | ..+|+||.|...
T Consensus       180 ~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~~----~~~~~i~gvVlnK~D~~~  252 (432)
T 2v3c_C          180 KADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---AGIQAKAFK----EAVGEIGSIIVTKLDGSA  252 (432)
T ss_dssp             SCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---HHHHHHHHH----TTSCSCEEEEEECSSSCS
T ss_pred             CCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---HHHHHHHHh----hcccCCeEEEEeCCCCcc
Confidence            35678999999643211     10 111236899999999876532   111222222    234 5 789999999743


Q ss_pred             ccccCHHHHHHHHHHcCCeEEEE
Q 030364          130 KRKVKNEEGELYAQENGLSFLET  152 (178)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~  152 (178)
                      .    ...........+.|+..+
T Consensus       253 ~----~g~~l~~~~~~~~pi~~i  271 (432)
T 2v3c_C          253 K----GGGALSAVAETKAPIKFI  271 (432)
T ss_dssp             T----THHHHHHHHHSSCCEEEE
T ss_pred             c----hHHHHHHHHHHCCCEEEe
Confidence            1    122333555566665544

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=98.45  E-value=2e-07  Score=72.53  Aligned_cols=65  Identities=17%  Similarity=0.053  Sum_probs=39.2

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCce-eeeEEEEEE--Ee-CCeEEEEEEEeCCCchh
Q 030364            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTI-GAAFFTQVL--SL-NEVTIKFDIWDTAGQER   71 (178)
Q Consensus         7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~-~~~~~~~~~--~~-~~~~~~~~i~d~~g~~~   71 (178)
                      ..+..+|+|+|.||+|||||+|+|++....-....+. +.+......  .. ......+.++||||...
T Consensus        35 ~~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~  103 (592)
T 1f5n_A           35 TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD  103 (592)
T ss_dssp             CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred             cCCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence            3467899999999999999999999875321111111 111111111  11 11234577999999643

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=98.36  E-value=4.4e-08  Score=74.66  Aligned_cols=114  Identities=16%  Similarity=0.132  Sum_probs=63.3

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchh--hhccc--------h
Q 030364            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER--YHSLA--------P   77 (178)
Q Consensus         8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~--~~~~~--------~   77 (178)
                      ...+.|+++|.+|+||||+.++|....... ..++.............+......+||..|...  ....+        .
T Consensus        37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~-~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~  115 (469)
T 1bif_A           37 NCPTLIVMVGLPARGKTYISKKLTRYLNFI-GVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVR  115 (469)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHHhcc-CCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence            346789999999999999999987542211 111111000000000011112335789888732  22222        4


Q ss_pred             hhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCC
Q 030364           78 MYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVD  126 (178)
Q Consensus        78 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D  126 (178)
                      .++...++.++|+|.++. ..+....|+..+...   ..+++.+-..++
T Consensus       116 ~~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~---~~~vv~l~~~~~  160 (469)
T 1bif_A          116 KFLSEEGGHVAVFDATNT-TRERRAMIFNFGEQN---GYKTFFVESICV  160 (469)
T ss_dssp             HHHHTTCCSEEEEESCCC-SHHHHHHHHHHHHHH---TCEEEEEEECCC
T ss_pred             HHHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHhc---CCcEEEEEEECC
Confidence            566677889999999986 455556666666554   334444443333

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=98.34  E-value=9.1e-08  Score=71.83  Aligned_cols=91  Identities=13%  Similarity=0.082  Sum_probs=53.6

Q ss_pred             EEEEEEEeCCCchh--hhc----cch--hhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcc
Q 030364           58 TIKFDIWDTAGQER--YHS----LAP--MYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEE  129 (178)
Q Consensus        58 ~~~~~i~d~~g~~~--~~~----~~~--~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~  129 (178)
                      .+.+.++|+||...  ...    ...  ......+.+++|+|+.......+   ....+...   -.+..||+||.|...
T Consensus       179 ~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~---~a~~f~~~---~~~~gVIlTKlD~~a  252 (433)
T 3kl4_A          179 KMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYD---LASRFHQA---SPIGSVIITKMDGTA  252 (433)
T ss_dssp             TCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHH---HHHHHHHH---CSSEEEEEECGGGCS
T ss_pred             CCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHH---HHHHHhcc---cCCcEEEEecccccc
Confidence            35677999999643  111    111  11225689999999987543222   22333332   134688999999642


Q ss_pred             ccccCHHHHHHHHHHcCCeEEEEeCCCCCCH
Q 030364          130 KRKVKNEEGELYAQENGLSFLETSAKSAHNV  160 (178)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  160 (178)
                          ..-.........+.|+..++.  |+++
T Consensus       253 ----~~G~als~~~~~g~Pi~fig~--Ge~v  277 (433)
T 3kl4_A          253 ----KGGGALSAVVATGATIKFIGT--GEKI  277 (433)
T ss_dssp             ----CHHHHHHHHHHHTCEEEEEEC--CSSS
T ss_pred             ----cchHHHHHHHHHCCCEEEEEC--CCCh
Confidence                122344455567899887775  6554

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=98.34  E-value=1.6e-07  Score=67.57  Aligned_cols=90  Identities=13%  Similarity=0.133  Sum_probs=60.2

Q ss_pred             cchhhhcCCcEEEEEEECCCHhH-HHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccc--CHHHHHHHHHHcCCeEEE
Q 030364           75 LAPMYYRGAAAAVVVYDITSMDS-FERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKV--KNEEGELYAQENGLSFLE  151 (178)
Q Consensus        75 ~~~~~~~~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~  151 (178)
                      +....+.++|.+++|+|+.++.. ...+.+++....   ..++|.++|+||+|+.+..+.  .........+..+.+++.
T Consensus        79 l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~---~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~  155 (307)
T 1t9h_A           79 LIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVE---ANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYL  155 (307)
T ss_dssp             ETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHH---TTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEE
T ss_pred             hhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHH---HCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeEEE
Confidence            34456889999999999997653 333443333222   347889999999999764320  012223333446789999


Q ss_pred             EeCCCCCCHHHHHHHH
Q 030364          152 TSAKSAHNVNELFYEI  167 (178)
Q Consensus       152 ~Sa~~~~~i~~~~~~l  167 (178)
                      +||.++.|+++++..+
T Consensus       156 ~sa~~~~g~~~L~~~~  171 (307)
T 1t9h_A          156 TSSKDQDSLADIIPHF  171 (307)
T ss_dssp             CCHHHHTTCTTTGGGG
T ss_pred             EecCCCCCHHHHHhhc
Confidence            9999999988776543

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=98.30  E-value=1.3e-06  Score=62.70  Aligned_cols=92  Identities=15%  Similarity=0.124  Sum_probs=54.7

Q ss_pred             EEEEEEEeCCCchh--hhc-cch-----hhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCce-EEEEEeCCCCc
Q 030364           58 TIKFDIWDTAGQER--YHS-LAP-----MYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLI-MFLVANKVDLE  128 (178)
Q Consensus        58 ~~~~~i~d~~g~~~--~~~-~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-~ivv~nK~D~~  128 (178)
                      .+.+.++||||...  ... ...     .....+|.+++|+|+.....   .....+.+..    ..| ..+|+||.|..
T Consensus       180 ~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~~~----~~~i~gvVlnk~D~~  252 (297)
T 1j8m_F          180 KMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQK---AYDLASKFNQ----ASKIGTIIITKMDGT  252 (297)
T ss_dssp             TCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGG---HHHHHHHHHH----TCTTEEEEEECGGGC
T ss_pred             CCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchHH---HHHHHHHHHh----hCCCCEEEEeCCCCC
Confidence            35678999999755  211 111     13457899999999875322   1222233322    244 67889999964


Q ss_pred             cccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHH
Q 030364          129 EKRKVKNEEGELYAQENGLSFLETSAKSAHNVNE  162 (178)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  162 (178)
                      .    ............+.|+..++  .|+++++
T Consensus       253 ~----~~g~~~~~~~~~~~pi~~i~--~Ge~v~d  280 (297)
T 1j8m_F          253 A----KGGGALSAVAATGATIKFIG--TGEKIDE  280 (297)
T ss_dssp             T----THHHHHHHHHTTTCCEEEEE--CSSSTTC
T ss_pred             c----chHHHHHHHHHHCcCEEEEe--CCCChhh
Confidence            2    12234456667788887776  4555543

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=98.21  E-value=3.4e-06  Score=66.25  Aligned_cols=23  Identities=22%  Similarity=0.427  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCc
Q 030364           12 KLVLLGDMGTGKTSLVLRFVKGQ   34 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~~~   34 (178)
                      .++|+|++|||||||++.+.+-.
T Consensus        47 ~iaIvG~nGsGKSTLL~~I~Gl~   69 (608)
T 3szr_A           47 AIAVIGDQSSGKSSVLEALSGVA   69 (608)
T ss_dssp             CEECCCCTTSCHHHHHHHHHSCC
T ss_pred             eEEEECCCCChHHHHHHHHhCCC
Confidence            49999999999999999998753

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=98.18  E-value=8.2e-06  Score=59.84  Aligned_cols=86  Identities=16%  Similarity=0.175  Sum_probs=55.6

Q ss_pred             hhcCCcEEEEEEECCCHh-HHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccC-HHHHHHHHHHcCCeEEEEeCCC
Q 030364           79 YYRGAAAAVVVYDITSMD-SFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVK-NEEGELYAQENGLSFLETSAKS  156 (178)
Q Consensus        79 ~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~-~~~~~~~~~~~~~~~~~~Sa~~  156 (178)
                      ...++|.+++|.+.. |. +...+.+++.....   .+.|.++|+||+|+.+..... .+.........+++++.+||.+
T Consensus       127 i~anvD~v~iv~a~~-P~~~~~~i~r~L~~a~~---~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~~  202 (358)
T 2rcn_A          127 IAANIDQIVIVSAIL-PELSLNIIDRYLVGCET---LQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHT  202 (358)
T ss_dssp             EEECCCEEEEEEEST-TTCCHHHHHHHHHHHHH---HTCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTTT
T ss_pred             HHhcCCEEEEEEeCC-CCCCHHHHHHHHHHHHh---cCCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecCC
Confidence            467899999886654 54 33334444433333   367789999999997543210 1111222335688999999999


Q ss_pred             CCCHHHHHHHHH
Q 030364          157 AHNVNELFYEIG  168 (178)
Q Consensus       157 ~~~i~~~~~~l~  168 (178)
                      +.|++++...+.
T Consensus       203 ~~gl~~L~~~~~  214 (358)
T 2rcn_A          203 QDGLKPLEEALT  214 (358)
T ss_dssp             TBTHHHHHHHHT
T ss_pred             CcCHHHHHHhcC
Confidence            999999887653

>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*

Probab=97.95  E-value=1.5e-05  Score=60.14  Aligned_cols=27  Identities=19%  Similarity=0.218  Sum_probs=23.1

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHHhC
Q 030364            7 KNIQVKLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus         7 ~~~~~~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      ..+..-|.|+|++++|||||+|+|++.
T Consensus        64 ~~~v~vVsV~G~~~~GKStLLN~llg~   90 (447)
T 3q5d_A           64 DKEVVAVSVAGAFRKGKSFLMDFMLRY   90 (447)
T ss_dssp             TSBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCceEEEEEECCCCCcHHHHHHHHhhh
Confidence            345677899999999999999999863

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=97.91  E-value=7.8e-06  Score=54.20  Aligned_cols=23  Identities=39%  Similarity=0.755  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      ++++++|++|+|||||++.+.+.
T Consensus         1 ~~i~l~G~nGsGKTTLl~~l~g~   23 (178)
T 1ye8_A            1 MKIIITGEPGVGKTTLVKKIVER   23 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            47899999999999999998764

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=97.78  E-value=1.7e-05  Score=52.85  Aligned_cols=26  Identities=23%  Similarity=0.238  Sum_probs=22.1

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHHhC
Q 030364            8 NIQVKLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus         8 ~~~~~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      .+.-.++++|++||||||+++.+.+.
T Consensus         7 ~~g~~i~l~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A            7 LGGNILLLSGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             CTTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHhc
Confidence            33557999999999999999999864

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=97.75  E-value=3.3e-06  Score=56.32  Aligned_cols=21  Identities=33%  Similarity=0.645  Sum_probs=19.2

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q 030364           13 LVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus        13 i~v~G~~~~GKStl~~~l~~~   33 (178)
                      |+|+|++|||||||+++|...
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~~   24 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999999854

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=97.73  E-value=2e-05  Score=52.18  Aligned_cols=24  Identities=29%  Similarity=0.526  Sum_probs=20.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhC
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      .--++++|++|||||||++.|.+.
T Consensus         5 g~~i~i~GpsGsGKSTL~~~L~~~   28 (180)
T 1kgd_A            5 RKTLVLLGAHGVGRRHIKNTLITK   28 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhh
Confidence            346899999999999999999864

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=97.72  E-value=6.7e-05  Score=50.48  Aligned_cols=66  Identities=12%  Similarity=0.042  Sum_probs=47.3

Q ss_pred             EEEEEEeCCCchhhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhC--CCCceEEEEEeCCCCc
Q 030364           59 IKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQG--NPNLIMFLVANKVDLE  128 (178)
Q Consensus        59 ~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~~ivv~nK~D~~  128 (178)
                      +.+.++|+|+..  .......+..+|.++++...+...  ..+...++.+....  .++.++.+|+|+.|..
T Consensus        76 yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~  143 (206)
T 4dzz_A           76 YDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAYSRKVEARFLITRKIEM  143 (206)
T ss_dssp             SSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTT
T ss_pred             CCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCC
Confidence            677899999864  334455677799999999887644  56666666666543  3466789999999853

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=97.70  E-value=2.4e-05  Score=52.69  Aligned_cols=23  Identities=30%  Similarity=0.563  Sum_probs=20.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      .-.++|+|++|||||||++.+.+
T Consensus         4 g~~i~lvGpsGaGKSTLl~~L~~   26 (198)
T 1lvg_A            4 PRPVVLSGPSGAGKSTLLKKLFQ   26 (198)
T ss_dssp             -CCEEEECCTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHh
Confidence            34689999999999999999876

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=97.68  E-value=3.1e-05  Score=52.16  Aligned_cols=24  Identities=25%  Similarity=0.428  Sum_probs=21.0

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      +...|+++|++||||||+++.|.+
T Consensus        28 ~g~~i~l~G~~GsGKSTl~~~L~~   51 (200)
T 4eun_A           28 PTRHVVVMGVSGSGKTTIAHGVAD   51 (200)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            456799999999999999999875

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=97.63  E-value=3.4e-05  Score=51.91  Aligned_cols=23  Identities=39%  Similarity=0.512  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      --++++|++|||||||++.+.+.
T Consensus         8 ~ii~l~Gp~GsGKSTl~~~L~~~   30 (205)
T 3tr0_A            8 NLFIISAPSGAGKTSLVRALVKA   30 (205)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             cEEEEECcCCCCHHHHHHHHHhh
Confidence            35899999999999999998864

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=97.61  E-value=5.2e-05  Score=50.98  Aligned_cols=25  Identities=24%  Similarity=0.429  Sum_probs=21.5

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhC
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      +.--|+++|++|+|||||++.|...
T Consensus        18 ~g~~ivl~GPSGaGKsTL~~~L~~~   42 (197)
T 3ney_A           18 GRKTLVLIGASGVGRSHIKNALLSQ   42 (197)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEECcCCCCHHHHHHHHHhh
Confidence            4556889999999999999999864

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=97.61  E-value=3.8e-05  Score=52.01  Aligned_cols=23  Identities=26%  Similarity=0.323  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      --++++|++|||||||++.+.+-
T Consensus        21 ei~~l~GpnGsGKSTLl~~l~gl   43 (207)
T 1znw_A           21 RVVVLSGPSAVGKSTVVRCLRER   43 (207)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHhh
Confidence            35889999999999999998864

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=97.60  E-value=0.00014  Score=52.27  Aligned_cols=23  Identities=35%  Similarity=0.645  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCc
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVKGQ   34 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~~~   34 (178)
                      -.++++|++|+|||||+|.+. ..
T Consensus       166 ~i~~l~G~sG~GKSTLln~l~-~~  188 (302)
T 2yv5_A          166 FICILAGPSGVGKSSILSRLT-GE  188 (302)
T ss_dssp             CEEEEECSTTSSHHHHHHHHH-SC
T ss_pred             cEEEEECCCCCCHHHHHHHHH-Hh
Confidence            467899999999999999998 43

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=97.59  E-value=3.1e-05  Score=50.87  Aligned_cols=20  Identities=30%  Similarity=0.654  Sum_probs=17.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHH
Q 030364           12 KLVLLGDMGTGKTSLVLRFV   31 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~   31 (178)
                      -++++|++|||||||++.+.
T Consensus        11 i~~l~G~nGsGKSTl~~~~~   30 (171)
T 4gp7_A           11 LVVLIGSSGSGKSTFAKKHF   30 (171)
T ss_dssp             EEEEECCTTSCHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHc
Confidence            57899999999999999754

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=97.59  E-value=4.1e-05  Score=52.41  Aligned_cols=25  Identities=28%  Similarity=0.432  Sum_probs=21.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCc
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVKGQ   34 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~~~   34 (178)
                      .--++|+|++|||||||++.+.+..
T Consensus        16 G~ii~l~GpsGsGKSTLlk~L~g~~   40 (219)
T 1s96_A           16 GTLYIVSAPSGAGKSSLIQALLKTQ   40 (219)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             CcEEEEECCCCCCHHHHHHHHhccC
Confidence            3468899999999999999998743

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=97.58  E-value=4.8e-05  Score=51.56  Aligned_cols=25  Identities=24%  Similarity=0.294  Sum_probs=22.0

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHHh
Q 030364            8 NIQVKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus         8 ~~~~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      .+...|+|+|++|||||||++.+.+
T Consensus        20 ~~g~~v~I~G~sGsGKSTl~~~l~~   44 (208)
T 3c8u_A           20 PGRQLVALSGAPGSGKSTLSNPLAA   44 (208)
T ss_dssp             CSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4567899999999999999998875

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=97.56  E-value=1.6e-05  Score=57.13  Aligned_cols=25  Identities=28%  Similarity=0.369  Sum_probs=20.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCc
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVKGQ   34 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~~~   34 (178)
                      .-.++++|++|+|||||+|.|.+..
T Consensus       173 G~~~~lvG~sG~GKSTLln~L~g~~  197 (307)
T 1t9h_A          173 DKTTVFAGQSGVGKSSLLNAISPEL  197 (307)
T ss_dssp             TSEEEEEESHHHHHHHHHHHHCC--
T ss_pred             CCEEEEECCCCCCHHHHHHHhcccc
Confidence            3478999999999999999998643

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=97.56  E-value=4.8e-05  Score=52.02  Aligned_cols=24  Identities=29%  Similarity=0.527  Sum_probs=20.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhC
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      .-.++|+|++|||||||++.+.+.
T Consensus        23 G~~~~lvGpsGsGKSTLl~~L~g~   46 (218)
T 1z6g_A           23 IYPLVICGPSGVGKGTLIKKLLNE   46 (218)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhh
Confidence            346899999999999999998874

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=97.54  E-value=8.6e-05  Score=48.72  Aligned_cols=23  Identities=26%  Similarity=0.452  Sum_probs=20.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      ...|+++|++||||||+++.|.+
T Consensus         8 g~~i~l~G~~GsGKSTl~~~l~~   30 (175)
T 1knq_A            8 HHIYVLMGVSGSGKSAVASEVAH   30 (175)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHHH
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHH
Confidence            45799999999999999998865

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=97.52  E-value=6.3e-05  Score=48.81  Aligned_cols=25  Identities=36%  Similarity=0.650  Sum_probs=21.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCc
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVKGQ   34 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~~~   34 (178)
                      .-.++++|+.|+|||||++.+.+..
T Consensus        33 Ge~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           33 AIMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhC
Confidence            3468899999999999999998754

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=97.52  E-value=0.00043  Score=52.19  Aligned_cols=83  Identities=14%  Similarity=0.057  Sum_probs=44.8

Q ss_pred             EEEEEEEeCCCchhhhc-cch-----hhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCce-EEEEEeCCCCccc
Q 030364           58 TIKFDIWDTAGQERYHS-LAP-----MYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLI-MFLVANKVDLEEK  130 (178)
Q Consensus        58 ~~~~~i~d~~g~~~~~~-~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-~ivv~nK~D~~~~  130 (178)
                      .+.+.|+||||...... ...     .....++.+++|+|+......   ......+..    ..+ ..+|+||.|....
T Consensus       183 ~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~---~~~~~~f~~----~l~i~gvVlnK~D~~~~  255 (433)
T 2xxa_A          183 FYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDA---ANTAKAFNE----ALPLTGVVLTKVDGDAR  255 (433)
T ss_dssp             TCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTH---HHHHHHHHH----HSCCCCEEEECTTSSSC
T ss_pred             CCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHH---HHHHHHHhc----cCCCeEEEEecCCCCcc
Confidence            35778999999643321 111     123468899999998864322   122233322    123 3578999996421


Q ss_pred             cccCHHHHHHHHHHcCCeEEE
Q 030364          131 RKVKNEEGELYAQENGLSFLE  151 (178)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~  151 (178)
                      .    ..........+.|+..
T Consensus       256 ~----g~~l~i~~~~~~Pi~~  272 (433)
T 2xxa_A          256 G----GAALSIRHITGKPIKF  272 (433)
T ss_dssp             C----THHHHHHHHHCCCEEE
T ss_pred             H----HHHHHHHHHHCCCeEE
Confidence            1    1233444455655433

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=97.51  E-value=6.2e-05  Score=51.04  Aligned_cols=25  Identities=28%  Similarity=0.372  Sum_probs=21.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCc
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVKGQ   34 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~~~   34 (178)
                      ..-|+++|++||||||+++.|....
T Consensus         8 g~~i~l~GpsGsGKsTl~~~L~~~~   32 (208)
T 3tau_A            8 GLLIVLSGPSGVGKGTVREAVFKDP   32 (208)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHST
T ss_pred             CcEEEEECcCCCCHHHHHHHHHhhC
Confidence            4468899999999999999998653

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=97.51  E-value=6.8e-05  Score=50.75  Aligned_cols=24  Identities=21%  Similarity=0.360  Sum_probs=21.1

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      +...|+++|++|||||||++.+.+
T Consensus         5 ~~~~i~i~G~~GsGKSTl~~~l~~   28 (211)
T 3asz_A            5 KPFVIGIAGGTASGKTTLAQALAR   28 (211)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHH
Confidence            456799999999999999998876

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=97.51  E-value=6.4e-05  Score=49.06  Aligned_cols=20  Identities=20%  Similarity=0.389  Sum_probs=18.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 030364           11 VKLVLLGDMGTGKTSLVLRF   30 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l   30 (178)
                      +.|+++|++||||||+.+.|
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            46899999999999999998

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=97.50  E-value=6.9e-05  Score=50.93  Aligned_cols=22  Identities=27%  Similarity=0.539  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      ++|+|+|++||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3fb4_A            1 MNIVLMGLPGAGKGTQAEQIIE   22 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999854

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=97.50  E-value=6.8e-05  Score=49.05  Aligned_cols=23  Identities=26%  Similarity=0.567  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      ..|+++|++||||||+.+.|.+.
T Consensus         5 ~~i~l~G~~GsGKSTl~~~La~~   27 (173)
T 1kag_A            5 RNIFLVGPMGAGKSTIGRQLAQQ   27 (173)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            46999999999999999998753

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=97.50  E-value=5.4e-05  Score=52.38  Aligned_cols=22  Identities=18%  Similarity=0.277  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 030364           12 KLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      .++++|++|||||||++.+.+-
T Consensus        33 ~~~iiG~nGsGKSTLl~~l~Gl   54 (235)
T 3tif_A           33 FVSIMGPSGSGKSTMLNIIGCL   54 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhcC
Confidence            5789999999999999988763

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=97.49  E-value=7.4e-05  Score=50.79  Aligned_cols=22  Identities=41%  Similarity=0.558  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      ++|+++|++||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3dl0_A            1 MNLVLMGLPGAGKGTQGERIVE   22 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999864

>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}

Probab=97.48  E-value=0.0011  Score=44.95  Aligned_cols=85  Identities=15%  Similarity=0.130  Sum_probs=53.7

Q ss_pred             EEEEEEEeCCCc-hhhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcc-ccccCH
Q 030364           58 TIKFDIWDTAGQ-ERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEE-KRKVKN  135 (178)
Q Consensus        58 ~~~~~i~d~~g~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~-~~~~~~  135 (178)
                      .+.+.++|+|+. ..  ......+..+|.+|++...+ ..+...+...++.+....  +.++.+|+|+.|... ..   .
T Consensus        67 ~yD~viiD~p~~~~~--~~~~~~l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~~--~~~~~vv~N~~~~~~~~~---~  138 (209)
T 3cwq_A           67 KYQNIVIDTQARPED--EDLEALADGCDLLVIPSTPD-ALALDALMLTIETLQKLG--NNRFRILLTIIPPYPSKD---G  138 (209)
T ss_dssp             GCSEEEEEEECCCSS--SHHHHHHHTSSEEEEEECSS-HHHHHHHHHHHHHHHHTC--SSSEEEEECSBCCTTSCH---H
T ss_pred             cCCEEEEeCCCCcCc--HHHHHHHHHCCEEEEEecCC-chhHHHHHHHHHHHHhcc--CCCEEEEEEecCCccchH---H
Confidence            366789999876 32  23345677899999988876 355666666666666532  456889999998543 11   2


Q ss_pred             HHHHHHHHHcCCeEE
Q 030364          136 EEGELYAQENGLSFL  150 (178)
Q Consensus       136 ~~~~~~~~~~~~~~~  150 (178)
                      .+..+..+..+.+++
T Consensus       139 ~~~~~~l~~~g~~v~  153 (209)
T 3cwq_A          139 DEARQLLTTAGLPLF  153 (209)
T ss_dssp             HHHHHHHHHTTCCBC
T ss_pred             HHHHHHHHHcCCchh
Confidence            333334444555444

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=97.47  E-value=8.3e-05  Score=50.41  Aligned_cols=22  Identities=41%  Similarity=0.609  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      |+|+++|+|||||+|....|..
T Consensus         1 M~Iil~GpPGsGKgTqa~~La~   22 (206)
T 3sr0_A            1 MILVFLGPPGAGKGTQAKRLAK   22 (206)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998875

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=97.47  E-value=7.7e-05  Score=49.61  Aligned_cols=21  Identities=24%  Similarity=0.479  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 030364           12 KLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~   32 (178)
                      .++++|++||||||+++.+.+
T Consensus         4 ii~l~G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            4 LYIITGPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            578999999999999999975

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=97.46  E-value=8.7e-05  Score=48.39  Aligned_cols=21  Identities=19%  Similarity=0.224  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 030364           12 KLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~   32 (178)
                      .|+++|++||||||+.+.|..
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~   23 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSK   23 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999865

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=97.46  E-value=9.4e-05  Score=49.77  Aligned_cols=25  Identities=28%  Similarity=0.437  Sum_probs=21.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCc
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVKGQ   34 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~~~   34 (178)
                      ...|+++|++||||||+++.|.+..
T Consensus         6 g~~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            6 GLLIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhh
Confidence            4578999999999999999988643

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=97.45  E-value=0.00011  Score=48.67  Aligned_cols=25  Identities=28%  Similarity=0.441  Sum_probs=21.7

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhC
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      +..+|+++|.+||||||+.+.|...
T Consensus         9 ~~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A            9 KGINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHh
Confidence            4568999999999999999988754

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=97.45  E-value=8.1e-05  Score=51.68  Aligned_cols=22  Identities=32%  Similarity=0.378  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 030364           12 KLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      .++++|++|||||||++.+.+-
T Consensus        26 ~~~liG~nGsGKSTLl~~l~Gl   47 (240)
T 2onk_A           26 YCVLLGPTGAGKSVFLELIAGI   47 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5789999999999999998864

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=97.45  E-value=8.3e-05  Score=50.17  Aligned_cols=24  Identities=29%  Similarity=0.468  Sum_probs=20.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhC
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      ..-|+++|++||||||+++.|...
T Consensus        12 ~~~i~l~G~sGsGKsTl~~~L~~~   35 (204)
T 2qor_A           12 IPPLVVCGPSGVGKGTLIKKVLSE   35 (204)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHh
Confidence            446899999999999999998753

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=97.43  E-value=6.7e-05  Score=51.53  Aligned_cols=22  Identities=23%  Similarity=0.372  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 030364           12 KLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      .++++|++|||||||++.+.+-
T Consensus        32 ~~~iiG~nGsGKSTLl~~l~Gl   53 (224)
T 2pcj_A           32 FVSIIGASGSGKSTLLYILGLL   53 (224)
T ss_dssp             EEEEEECTTSCHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5789999999999999998764

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=97.43  E-value=0.00011  Score=48.23  Aligned_cols=22  Identities=23%  Similarity=0.478  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      ..|++.|++||||||+.+.|..
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            4689999999999999999986

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=97.41  E-value=8.7e-05  Score=50.61  Aligned_cols=22  Identities=27%  Similarity=0.321  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 030364           12 KLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      .++++|++|||||||++.+.+-
T Consensus        37 ~~~iiG~NGsGKSTLlk~l~Gl   58 (214)
T 1sgw_A           37 VVNFHGPNGIGKTTLLKTISTY   58 (214)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5789999999999999998764

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=97.41  E-value=0.00011  Score=51.15  Aligned_cols=22  Identities=32%  Similarity=0.602  Sum_probs=20.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHH
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFV   31 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~   31 (178)
                      ...|+|+|++||||||+++.+.
T Consensus        27 ~~~i~l~G~~GsGKSTl~k~La   48 (246)
T 2bbw_A           27 LLRAVILGPPGSGKGTVCQRIA   48 (246)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            3579999999999999999988

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.41  E-value=9.7e-05  Score=54.21  Aligned_cols=24  Identities=29%  Similarity=0.362  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCcC
Q 030364           12 KLVLLGDMGTGKTSLVLRFVKGQF   35 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~~~~   35 (178)
                      .++++|++|+|||||+|.|.+...
T Consensus       217 ~~~lvG~sG~GKSTLln~L~g~~~  240 (358)
T 2rcn_A          217 ISIFAGQSGVGKSSLLNALLGLQN  240 (358)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCCSS
T ss_pred             EEEEECCCCccHHHHHHHHhcccc
Confidence            689999999999999999997543

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=97.40  E-value=9.9e-05  Score=49.34  Aligned_cols=22  Identities=32%  Similarity=0.480  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 030364           12 KLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      .++++|++|+|||||++.+.+.
T Consensus         3 ~i~i~G~nG~GKTTll~~l~g~   24 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKASEV   24 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHHhh
Confidence            5889999999999999988763

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=97.40  E-value=8.6e-05  Score=52.60  Aligned_cols=22  Identities=32%  Similarity=0.453  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 030364           12 KLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      .++++|++|||||||++.+.+-
T Consensus        36 ~~~iiGpnGsGKSTLl~~l~Gl   57 (275)
T 3gfo_A           36 VTAILGGNGVGKSTLFQNFNGI   57 (275)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5789999999999999998864

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=97.39  E-value=8.8e-05  Score=52.19  Aligned_cols=22  Identities=18%  Similarity=0.347  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 030364           12 KLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      .++++|++|||||||++.+.+-
T Consensus        34 ~~~liG~nGsGKSTLlk~l~Gl   55 (262)
T 1b0u_A           34 VISIIGSSGSGKSTFLRCINFL   55 (262)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5789999999999999998864

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=97.39  E-value=0.00012  Score=49.11  Aligned_cols=22  Identities=27%  Similarity=0.681  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      +.|++.|.+||||||+.+.|..
T Consensus         1 ~~I~i~G~~GsGKsT~~~~L~~   22 (205)
T 2jaq_A            1 MKIAIFGTVGAGKSTISAEISK   22 (205)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEECCCccCHHHHHHHHHH
Confidence            3689999999999999998875

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=97.39  E-value=0.00014  Score=48.05  Aligned_cols=23  Identities=26%  Similarity=0.488  Sum_probs=20.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      ...|+++|.+||||||+.+.|..
T Consensus         4 g~~I~l~G~~GsGKST~~~~La~   26 (186)
T 3cm0_A            4 GQAVIFLGPPGAGKGTQASRLAQ   26 (186)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            56899999999999999999864

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=97.39  E-value=0.00011  Score=49.44  Aligned_cols=22  Identities=27%  Similarity=0.579  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      ++|+|+|.+||||||+.+.|.+
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH
Confidence            3799999999999999999876

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=97.38  E-value=0.0001  Score=51.09  Aligned_cols=22  Identities=27%  Similarity=0.573  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 030364           12 KLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      .++++|++|||||||++.+.+-
T Consensus        33 ~~~i~G~nGsGKSTLl~~l~Gl   54 (237)
T 2cbz_A           33 LVAVVGQVGCGKSSLLSALLAE   54 (237)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            6889999999999999998763

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=97.38  E-value=0.00016  Score=48.54  Aligned_cols=25  Identities=24%  Similarity=0.573  Sum_probs=21.8

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHHh
Q 030364            8 NIQVKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus         8 ~~~~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      ...+.|+++|.+||||||+.+.|..
T Consensus        18 ~~~~~I~l~G~~GsGKST~a~~La~   42 (201)
T 2cdn_A           18 GSHMRVLLLGPPGAGKGTQAVKLAE   42 (201)
T ss_dssp             CSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3467899999999999999998865

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=97.37  E-value=9.4e-05  Score=51.88  Aligned_cols=22  Identities=23%  Similarity=0.392  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 030364           12 KLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      .++++|++|||||||++.+.+-
T Consensus        35 ~~~liG~nGsGKSTLlk~l~Gl   56 (257)
T 1g6h_A           35 VTLIIGPNGSGKSTLINVITGF   56 (257)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5789999999999999998864

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=97.37  E-value=0.00011  Score=51.59  Aligned_cols=23  Identities=17%  Similarity=0.443  Sum_probs=20.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      .=.++|+|++||||||+++.+.+
T Consensus        25 g~~v~i~Gp~GsGKSTll~~l~g   47 (261)
T 2eyu_A           25 MGLILVTGPTGSGKSTTIASMID   47 (261)
T ss_dssp             SEEEEEECSTTCSHHHHHHHHHH
T ss_pred             CCEEEEECCCCccHHHHHHHHHH
Confidence            34689999999999999999876

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=97.37  E-value=0.00012  Score=49.30  Aligned_cols=22  Identities=27%  Similarity=0.439  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      ..|+++|.+||||||+.+.|..
T Consensus        19 ~~I~l~G~~GsGKSTla~~L~~   40 (202)
T 3t61_A           19 GSIVVMGVSGSGKSSVGEAIAE   40 (202)
T ss_dssp             SCEEEECSTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999998865

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=97.37  E-value=0.00011  Score=51.07  Aligned_cols=22  Identities=18%  Similarity=0.314  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 030364           12 KLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      .++++|++|||||||++.+.+-
T Consensus        30 ~~~i~G~nGsGKSTLl~~l~Gl   51 (243)
T 1mv5_A           30 IIAFAGPSGGGKSTIFSLLERF   51 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            6899999999999999998864

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=97.37  E-value=9.5e-05  Score=52.14  Aligned_cols=22  Identities=23%  Similarity=0.427  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 030364           12 KLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      .++++|++|||||||++.+.+-
T Consensus        39 ~~~liG~nGsGKSTLl~~l~Gl   60 (266)
T 4g1u_C           39 MVAIIGPNGAGKSTLLRLLTGY   60 (266)
T ss_dssp             EEEEECCTTSCHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcC
Confidence            5789999999999999998864

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=97.36  E-value=0.00012  Score=49.73  Aligned_cols=22  Identities=23%  Similarity=0.412  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      ++|++.|.+||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (214)
T 1e4v_A            1 MRIILLGAPVAGKGTQAQFIME   22 (214)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999998865

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=97.36  E-value=0.00012  Score=50.49  Aligned_cols=22  Identities=36%  Similarity=0.582  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 030364           12 KLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      .++++|++|||||||++.+.+-
T Consensus        36 ~~~i~G~nGsGKSTLl~~l~Gl   57 (229)
T 2pze_A           36 LLAVAGSTGAGKTSLLMMIMGE   57 (229)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5789999999999999998764

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=97.36  E-value=0.00013  Score=47.91  Aligned_cols=22  Identities=23%  Similarity=0.363  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      ..|+++|.+||||||+.+.|..
T Consensus         4 ~~i~l~G~~GsGKST~a~~La~   25 (178)
T 1qhx_A            4 RMIILNGGSSAGKSGIVRCLQS   25 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999876

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=97.36  E-value=0.0001  Score=51.82  Aligned_cols=22  Identities=23%  Similarity=0.398  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 030364           12 KLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      .++++|++|||||||++.+.+-
T Consensus        52 i~~liG~NGsGKSTLlk~l~Gl   73 (263)
T 2olj_A           52 VVVVIGPSGSGKSTFLRCLNLL   73 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Confidence            5789999999999999998764

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=97.36  E-value=0.00011  Score=51.16  Aligned_cols=22  Identities=23%  Similarity=0.379  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 030364           12 KLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      .++++|++|||||||++.+.+-
T Consensus        37 ~~~i~G~nGsGKSTLl~~l~Gl   58 (247)
T 2ff7_A           37 VIGIVGRSGSGKSTLTKLIQRF   58 (247)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            6889999999999999998764

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=97.35  E-value=0.00014  Score=48.30  Aligned_cols=22  Identities=18%  Similarity=0.303  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      ..|++.|.+||||||+.+.|..
T Consensus         2 ~~I~i~G~~GsGKsT~~~~L~~   23 (194)
T 1nks_A            2 KIGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999998865

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=97.35  E-value=0.00011  Score=51.10  Aligned_cols=22  Identities=27%  Similarity=0.380  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 030364           12 KLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      .++++|++|||||||++.+.+-
T Consensus        34 ~~~l~G~nGsGKSTLl~~l~Gl   55 (240)
T 1ji0_A           34 IVTLIGANGAGKTTTLSAIAGL   55 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5789999999999999998864

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=97.35  E-value=0.00015  Score=48.70  Aligned_cols=23  Identities=43%  Similarity=0.690  Sum_probs=20.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      ...|+++|++||||||+.+.|..
T Consensus        25 ~~~i~l~G~~GsGKsTl~~~La~   47 (199)
T 3vaa_A           25 MVRIFLTGYMGAGKTTLGKAFAR   47 (199)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHH
Confidence            34799999999999999999874

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=97.35  E-value=0.00012  Score=51.10  Aligned_cols=22  Identities=27%  Similarity=0.370  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 030364           12 KLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      .++++|++|+|||||++.+.+-
T Consensus        31 ~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           31 VHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5789999999999999999874

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=97.34  E-value=0.00011  Score=51.49  Aligned_cols=22  Identities=27%  Similarity=0.300  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 030364           12 KLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      .++++|++|||||||++.+.+-
T Consensus        43 i~~l~G~NGsGKSTLlk~l~Gl   64 (256)
T 1vpl_A           43 IFGLIGPNGAGKTTTLRIISTL   64 (256)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5789999999999999998864

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=97.34  E-value=0.00016  Score=48.04  Aligned_cols=23  Identities=26%  Similarity=0.416  Sum_probs=20.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      ...|+++|.+||||||+.+.|..
T Consensus         5 ~~~I~l~G~~GsGKST~~~~L~~   27 (193)
T 2rhm_A            5 PALIIVTGHPATGKTTLSQALAT   27 (193)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999999864

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=97.34  E-value=0.00011  Score=51.23  Aligned_cols=22  Identities=36%  Similarity=0.543  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 030364           12 KLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      .++++|++|+|||||++.+.+-
T Consensus        28 ~~~liG~NGsGKSTLlk~l~Gl   49 (249)
T 2qi9_C           28 ILHLVGPNGAGKSTLLARMAGM   49 (249)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            5789999999999999998764

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=97.34  E-value=0.00013  Score=51.47  Aligned_cols=22  Identities=23%  Similarity=0.430  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 030364           12 KLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      .++++|++|||||||++.+.+-
T Consensus        48 ~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           48 VHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5789999999999999999874

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=97.33  E-value=0.00012  Score=48.24  Aligned_cols=24  Identities=33%  Similarity=0.501  Sum_probs=20.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhC
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      .-.++++|++|+|||||++.+.+.
T Consensus        38 g~~~~l~G~~G~GKTtL~~~i~~~   61 (180)
T 3ec2_A           38 GKGLTFVGSPGVGKTHLAVATLKA   61 (180)
T ss_dssp             CCEEEECCSSSSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHH
Confidence            457899999999999999988753

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=97.33  E-value=0.00014  Score=52.24  Aligned_cols=23  Identities=26%  Similarity=0.410  Sum_probs=20.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      .-.++|+|++|+|||||++.|.+
T Consensus       126 Ge~vaIvGpsGsGKSTLl~lL~g  148 (305)
T 2v9p_A          126 KNCLAFIGPPNTGKSMLCNSLIH  148 (305)
T ss_dssp             CSEEEEECSSSSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCcHHHHHHHHhh
Confidence            44789999999999999999875

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=97.33  E-value=0.00015  Score=49.53  Aligned_cols=22  Identities=23%  Similarity=0.368  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      ..|+++|++||||||+.+.|..
T Consensus         6 ~~i~i~G~~GsGKSTl~~~L~~   27 (227)
T 1cke_A            6 PVITIDGPSGAGKGTLCKAMAE   27 (227)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998865

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=97.33  E-value=0.00024  Score=47.74  Aligned_cols=24  Identities=29%  Similarity=0.434  Sum_probs=20.7

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      ....|++.|.+||||||+.+.|..
T Consensus        14 ~~~~I~l~G~~GsGKsT~~~~L~~   37 (203)
T 1ukz_A           14 QVSVIFVLGGPGAGKGTQCEKLVK   37 (203)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            345789999999999999998874

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=97.33  E-value=0.00019  Score=49.84  Aligned_cols=24  Identities=29%  Similarity=0.476  Sum_probs=21.6

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      +.++|+++|++||||||+.+.|..
T Consensus        28 ~~~~I~l~G~~GsGKsT~a~~L~~   51 (243)
T 3tlx_A           28 PDGRYIFLGAPGSGKGTQSLNLKK   51 (243)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            467999999999999999999864

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=97.33  E-value=0.00023  Score=48.61  Aligned_cols=20  Identities=30%  Similarity=0.609  Sum_probs=17.5

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q 030364           13 LVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        13 i~v~G~~~~GKStl~~~l~~   32 (178)
                      |+++|+|||||+|....|..
T Consensus        32 I~llGpPGsGKgTqa~~L~~   51 (217)
T 3umf_A           32 IFVLGGPGSGKGTQCEKLVQ   51 (217)
T ss_dssp             EEEECCTTCCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            56789999999999998875

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=97.33  E-value=0.00016  Score=47.92  Aligned_cols=22  Identities=23%  Similarity=0.211  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      ..|++.|.+||||||+.+.|..
T Consensus         4 ~~I~i~G~~GsGKsT~~~~L~~   25 (192)
T 1kht_A            4 KVVVVTGVPGVGSTTSSQLAMD   25 (192)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998864

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=97.33  E-value=9.9e-05  Score=50.10  Aligned_cols=22  Identities=32%  Similarity=0.357  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 030364           12 KLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      .++++|++|+|||||++.+.+-
T Consensus        24 ~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           24 IVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             EEEEECCTTSSTTHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5789999999999999998875

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=97.33  E-value=0.00017  Score=46.92  Aligned_cols=22  Identities=23%  Similarity=0.446  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      ++|++.|.+||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (168)
T 2pt5_A            1 MRIYLIGFMCSGKSTVGSLLSR   22 (168)
T ss_dssp             CEEEEESCTTSCHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999998875

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=97.32  E-value=0.00019  Score=48.20  Aligned_cols=24  Identities=21%  Similarity=0.297  Sum_probs=20.8

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      +...|+++|++||||||+.+.|.+
T Consensus        24 ~g~~i~l~G~sGsGKSTl~~~La~   47 (200)
T 3uie_A           24 KGCVIWVTGLSGSGKSTLACALNQ   47 (200)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            356799999999999999998875

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=97.32  E-value=0.00017  Score=49.16  Aligned_cols=23  Identities=26%  Similarity=0.553  Sum_probs=20.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      .+.|+++|.+||||||+.+.|..
T Consensus         4 ~~~I~l~G~~GsGKsT~a~~La~   26 (220)
T 1aky_A            4 SIRMVLIGPPGAGKGTQAPNLQE   26 (220)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999998865

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=97.31  E-value=0.00014  Score=51.17  Aligned_cols=22  Identities=23%  Similarity=0.437  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 030364           12 KLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      .++++|++|||||||++.+.+-
T Consensus        48 ~~~i~G~nGsGKSTLl~~l~Gl   69 (260)
T 2ghi_A           48 TCALVGHTGSGKSTIAKLLYRF   69 (260)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            6899999999999999998864

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=97.31  E-value=0.00014  Score=51.67  Aligned_cols=22  Identities=36%  Similarity=0.407  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 030364           12 KLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      .++++|++|||||||++.+.+-
T Consensus        49 ~~~liG~NGsGKSTLlk~l~Gl   70 (279)
T 2ihy_A           49 KWILYGLNGAGKTTLLNILNAY   70 (279)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            5789999999999999998864

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=97.30  E-value=0.00027  Score=46.83  Aligned_cols=25  Identities=28%  Similarity=0.429  Sum_probs=21.6

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHHh
Q 030364            8 NIQVKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus         8 ~~~~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      .+...|+++|.+||||||+.+.|..
T Consensus        11 ~~~~~i~l~G~~GsGKsT~~~~L~~   35 (186)
T 2yvu_A           11 EKGIVVWLTGLPGSGKTTIATRLAD   35 (186)
T ss_dssp             SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHH
Confidence            3467899999999999999998865

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=97.30  E-value=0.0002  Score=48.27  Aligned_cols=23  Identities=26%  Similarity=0.286  Sum_probs=20.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      ...|++.|.+||||||+.+.|..
T Consensus         4 ~~~I~i~G~~GsGKsT~~~~L~~   26 (213)
T 2plr_A            4 GVLIAFEGIDGSGKSSQATLLKD   26 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHH
Confidence            46799999999999999999875

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=97.29  E-value=0.00016  Score=49.53  Aligned_cols=23  Identities=26%  Similarity=0.543  Sum_probs=20.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      .+.|+++|.+||||||+.+.|..
T Consensus         7 ~~~I~l~G~~GsGKsT~a~~La~   29 (227)
T 1zd8_A            7 LLRAVIMGAPGSGKGTVSSRITT   29 (227)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999998874

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=97.29  E-value=0.00015  Score=51.29  Aligned_cols=22  Identities=23%  Similarity=0.348  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 030364           12 KLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      .++|+|++|||||||++.+.+-
T Consensus        47 ~~~i~G~nGsGKSTLlk~l~Gl   68 (271)
T 2ixe_A           47 VTALVGPNGSGKSTVAALLQNL   68 (271)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5789999999999999998864

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=97.29  E-value=0.00019  Score=48.36  Aligned_cols=22  Identities=32%  Similarity=0.520  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      +.|+++|++||||||+.+.|.+
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999875

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=97.28  E-value=0.00014  Score=50.90  Aligned_cols=22  Identities=32%  Similarity=0.453  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 030364           12 KLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      .++++|++|||||||++.+.+-
T Consensus        33 ~~~l~G~nGsGKSTLl~~l~Gl   54 (253)
T 2nq2_C           33 ILAVLGQNGCGKSTLLDLLLGI   54 (253)
T ss_dssp             EEEEECCSSSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5789999999999999998864

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=97.28  E-value=0.00014  Score=51.25  Aligned_cols=22  Identities=27%  Similarity=0.443  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 030364           12 KLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      .++++|++|||||||++.+.+-
T Consensus        35 ~~~liG~nGsGKSTLl~~i~Gl   56 (266)
T 2yz2_A           35 CLLVAGNTGSGKSTLLQIVAGL   56 (266)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            5789999999999999998764

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=97.28  E-value=0.00024  Score=47.93  Aligned_cols=25  Identities=24%  Similarity=0.262  Sum_probs=21.7

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhC
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      +...|+|+|++||||||+++.|.+.
T Consensus        20 ~~~~i~i~G~~GsGKSTl~~~L~~~   44 (207)
T 2qt1_A           20 KTFIIGISGVTNSGKTTLAKNLQKH   44 (207)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHh
Confidence            4567999999999999999998763

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=97.26  E-value=0.00025  Score=51.19  Aligned_cols=26  Identities=12%  Similarity=0.252  Sum_probs=22.4

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHHh
Q 030364            7 KNIQVKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus         7 ~~~~~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      ..+..-|+|+|++|||||||++.+.+
T Consensus        87 ~~~g~ivgI~G~sGsGKSTL~~~L~g  112 (312)
T 3aez_A           87 RPVPFIIGVAGSVAVGKSTTARVLQA  112 (312)
T ss_dssp             SCCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCchHHHHHHHHHh
Confidence            34567899999999999999998876

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=97.26  E-value=0.00024  Score=46.81  Aligned_cols=23  Identities=30%  Similarity=0.443  Sum_probs=20.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      ...|+++|.+|+||||+.+.|..
T Consensus        11 ~~~i~i~G~~GsGKst~~~~l~~   33 (180)
T 3iij_A           11 LPNILLTGTPGVGKTTLGKELAS   33 (180)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEeCCCCCHHHHHHHHHH
Confidence            45799999999999999999874

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=97.25  E-value=0.00024  Score=47.21  Aligned_cols=23  Identities=30%  Similarity=0.534  Sum_probs=20.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      ...|+++|.+||||||+.+.|..
T Consensus         3 ~~~I~l~G~~GsGKsT~a~~L~~   25 (196)
T 1tev_A            3 PLVVFVLGGPGAGKGTQCARIVE   25 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999998864

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=97.25  E-value=0.0011  Score=44.53  Aligned_cols=21  Identities=33%  Similarity=0.605  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 030364           12 KLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~   32 (178)
                      .+++.|++|+|||++++.+..
T Consensus        40 ~~ll~G~~G~GKT~l~~~l~~   60 (226)
T 2chg_A           40 HLLFSGPPGTGKTATAIALAR   60 (226)
T ss_dssp             CEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            499999999999999998875

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=97.25  E-value=0.00017  Score=49.28  Aligned_cols=23  Identities=26%  Similarity=0.421  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      --++++|++|+|||||++.+.+.
T Consensus        26 ~~~~l~G~nGsGKSTll~~l~g~   48 (231)
T 4a74_A           26 AITEVFGEFGSGKTQLAHTLAVM   48 (231)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            35889999999999999999864

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=97.25  E-value=0.00018  Score=50.61  Aligned_cols=23  Identities=35%  Similarity=0.528  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCc
Q 030364           12 KLVLLGDMGTGKTSLVLRFVKGQ   34 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~~~   34 (178)
                      .++++|++|+|||||++.+.+-.
T Consensus        32 ~~~i~G~NGsGKSTLlk~l~Gl~   54 (263)
T 2pjz_A           32 KVIILGPNGSGKTTLLRAISGLL   54 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999999988643

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=97.24  E-value=0.00021  Score=47.06  Aligned_cols=23  Identities=30%  Similarity=0.424  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      .-++++|.+|+|||||++++...
T Consensus         7 ~~i~i~G~sGsGKTTl~~~l~~~   29 (174)
T 1np6_A            7 PLLAFAAWSGTGKTTLLKKLIPA   29 (174)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHh
Confidence            45789999999999999999864

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=97.24  E-value=0.00015  Score=52.04  Aligned_cols=24  Identities=29%  Similarity=0.313  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCc
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVKGQ   34 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~~~   34 (178)
                      -.++++|++|+|||||+|.+.+..
T Consensus       170 eiv~l~G~sG~GKSTll~~l~g~~  193 (301)
T 1u0l_A          170 KISTMAGLSGVGKSSLLNAINPGL  193 (301)
T ss_dssp             SEEEEECSTTSSHHHHHHHHSTTC
T ss_pred             CeEEEECCCCCcHHHHHHHhcccc
Confidence            367899999999999999998754

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=97.23  E-value=0.00023  Score=47.00  Aligned_cols=23  Identities=39%  Similarity=0.573  Sum_probs=20.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      ...|+++|++||||||+.+.|..
T Consensus         5 ~~~i~l~G~~GsGKst~a~~La~   27 (185)
T 3trf_A            5 LTNIYLIGLMGAGKTSVGSQLAK   27 (185)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            34799999999999999999864

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=97.23  E-value=0.00011  Score=50.55  Aligned_cols=23  Identities=39%  Similarity=0.528  Sum_probs=15.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHH-hC
Q 030364           11 VKLVLLGDMGTGKTSLVLRFV-KG   33 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~-~~   33 (178)
                      --++++|++||||||+++.|. +.
T Consensus        28 ~ii~l~Gp~GsGKSTl~~~L~~~~   51 (231)
T 3lnc_A           28 VILVLSSPSGCGKTTVANKLLEKQ   51 (231)
T ss_dssp             CEEEEECSCC----CHHHHHHC--
T ss_pred             CEEEEECCCCCCHHHHHHHHHhcC
Confidence            368899999999999999998 53

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=97.23  E-value=0.00023  Score=48.71  Aligned_cols=22  Identities=18%  Similarity=0.344  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      +.|++.|.+||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~La~   22 (223)
T 2xb4_A            1 MNILIFGPNGSGKGTQGNLVKD   22 (223)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999998864

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=97.22  E-value=0.00064  Score=43.13  Aligned_cols=23  Identities=22%  Similarity=0.325  Sum_probs=19.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      ...|++.|++|+|||++.+.+..
T Consensus        27 ~~~vll~G~~GtGKt~lA~~i~~   49 (143)
T 3co5_A           27 TSPVFLTGEAGSPFETVARYFHK   49 (143)
T ss_dssp             SSCEEEEEETTCCHHHHHGGGCC
T ss_pred             CCcEEEECCCCccHHHHHHHHHH
Confidence            35699999999999999987654

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=97.22  E-value=0.00027  Score=47.41  Aligned_cols=24  Identities=21%  Similarity=0.306  Sum_probs=21.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhC
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      .+.|++.|.+||||||+.+.|...
T Consensus         4 ~~~I~l~G~~GsGKsT~~~~L~~~   27 (204)
T 2v54_A            4 GALIVFEGLDKSGKTTQCMNIMES   27 (204)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHH
Confidence            467999999999999999998753

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=97.22  E-value=0.00021  Score=46.84  Aligned_cols=21  Identities=38%  Similarity=0.725  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 030364           12 KLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~   32 (178)
                      +|+++|++||||||+.+.|..
T Consensus         6 ~i~i~G~~GsGKsTla~~La~   26 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAK   26 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            699999999999999998864

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=97.22  E-value=0.00027  Score=49.09  Aligned_cols=23  Identities=13%  Similarity=0.341  Sum_probs=20.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      ...|.|+|++|||||||++.+.+
T Consensus        25 g~iigI~G~~GsGKSTl~k~L~~   47 (245)
T 2jeo_A           25 PFLIGVSGGTASGKSTVCEKIME   47 (245)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999998876

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=97.20  E-value=0.00034  Score=46.40  Aligned_cols=22  Identities=27%  Similarity=0.471  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      ..|++.|.+||||||+.+.|..
T Consensus         7 ~~I~l~G~~GsGKsT~~~~L~~   28 (194)
T 1qf9_A            7 NVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998864

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=97.20  E-value=0.00028  Score=50.29  Aligned_cols=24  Identities=33%  Similarity=0.422  Sum_probs=21.0

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      ...-|+++|++||||||+.+.|..
T Consensus        32 ~~~livl~G~sGsGKSTla~~L~~   55 (287)
T 1gvn_B           32 SPTAFLLGGQPGSGKTSLRSAIFE   55 (287)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            356789999999999999999874

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=97.19  E-value=0.00027  Score=47.06  Aligned_cols=23  Identities=22%  Similarity=0.421  Sum_probs=20.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      ...|+++|.+||||||+.+.|..
T Consensus         9 ~~~I~l~G~~GsGKsT~~~~La~   31 (196)
T 2c95_A            9 TNIIFVVGGPGSGKGTQCEKIVQ   31 (196)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999998864

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=97.19  E-value=0.00027  Score=46.96  Aligned_cols=22  Identities=23%  Similarity=0.373  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      +.|++.|.+||||||+.+.|..
T Consensus         1 ~~I~l~G~~GsGKsT~~~~L~~   22 (195)
T 2pbr_A            1 MLIAFEGIDGSGKTTQAKKLYE   22 (195)
T ss_dssp             CEEEEECSTTSCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3589999999999999999875

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=97.19  E-value=0.0003  Score=48.47  Aligned_cols=24  Identities=38%  Similarity=0.533  Sum_probs=21.1

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      ..++|+++|.+||||||+.+.|..
T Consensus        15 ~~~~I~l~G~~GsGKsT~a~~La~   38 (233)
T 1ak2_A           15 KGVRAVLLGPPGAGKGTQAPKLAK   38 (233)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            356899999999999999998864

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=97.19  E-value=0.00019  Score=52.87  Aligned_cols=24  Identities=25%  Similarity=0.408  Sum_probs=21.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhC
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      .-+++|+|++|+|||||++.|.+-
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl  193 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAV  193 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHH
Confidence            568999999999999999998864

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=97.17  E-value=0.00023  Score=52.24  Aligned_cols=21  Identities=19%  Similarity=0.490  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 030364           12 KLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~   32 (178)
                      .++|+|++||||||+++.+.+
T Consensus       125 ~i~I~GptGSGKTTlL~~l~g  145 (356)
T 3jvv_A          125 LVLVTGPTGSGKSTTLAAMLD  145 (356)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            799999999999999999876

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=97.17  E-value=0.00034  Score=47.19  Aligned_cols=23  Identities=22%  Similarity=0.176  Sum_probs=20.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      ...|++.|.+||||||+.+.|..
T Consensus        10 ~~~I~l~G~~GsGKST~~~~L~~   32 (212)
T 2wwf_A           10 GKFIVFEGLDRSGKSTQSKLLVE   32 (212)
T ss_dssp             SCEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHH
Confidence            56899999999999999998864

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=97.17  E-value=0.00024  Score=48.49  Aligned_cols=23  Identities=17%  Similarity=0.260  Sum_probs=20.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      .+.|+|+|++||||||+.+.|..
T Consensus         5 ~~~I~l~G~~GsGKsT~~~~La~   27 (222)
T 1zak_A            5 PLKVMISGAPASGKGTQCELIKT   27 (222)
T ss_dssp             SCCEEEEESTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            36799999999999999998864

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=97.16  E-value=0.00022  Score=52.31  Aligned_cols=23  Identities=30%  Similarity=0.455  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCc
Q 030364           12 KLVLLGDMGTGKTSLVLRFVKGQ   34 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~~~   34 (178)
                      -++++|++|||||||++.+.+-.
T Consensus        32 ~~~llGpsGsGKSTLLr~iaGl~   54 (359)
T 3fvq_A           32 ILFIIGASGCGKTTLLRCLAGFE   54 (359)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCchHHHHHHHHhcCC
Confidence            47899999999999999988743

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=97.16  E-value=0.00041  Score=49.51  Aligned_cols=26  Identities=15%  Similarity=0.332  Sum_probs=22.0

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHHh
Q 030364            7 KNIQVKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus         7 ~~~~~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      ..+...|+|.|++|||||||++.|..
T Consensus        28 ~~~~~ii~I~G~sGsGKSTla~~L~~   53 (290)
T 1odf_A           28 NKCPLFIFFSGPQGSGKSFTSIQIYN   53 (290)
T ss_dssp             CCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            34567899999999999999988764

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=97.15  E-value=0.00026  Score=50.08  Aligned_cols=20  Identities=35%  Similarity=0.478  Sum_probs=19.1

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q 030364           13 LVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        13 i~v~G~~~~GKStl~~~l~~   32 (178)
                      ++++|++|+|||||++.+.+
T Consensus        47 vlL~Gp~GtGKTtLakala~   66 (274)
T 2x8a_A           47 VLLAGPPGCGKTLLAKAVAN   66 (274)
T ss_dssp             EEEESSTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            99999999999999999886

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=97.15  E-value=0.0003  Score=47.88  Aligned_cols=23  Identities=30%  Similarity=0.455  Sum_probs=20.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      .+.|+++|.+||||||+.+.|..
T Consensus         5 ~~~I~l~G~~GsGKsT~a~~La~   27 (217)
T 3be4_A            5 KHNLILIGAPGSGKGTQCEFIKK   27 (217)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999998864

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=97.15  E-value=0.00034  Score=46.81  Aligned_cols=25  Identities=16%  Similarity=0.353  Sum_probs=21.8

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhC
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      +...|+|.|.+||||||+.+.|...
T Consensus         7 ~~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            7 HPIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHC
Confidence            3568999999999999999998764

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=97.15  E-value=0.00023  Score=50.78  Aligned_cols=22  Identities=36%  Similarity=0.582  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 030364           12 KLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      .++++|++|+|||||++.+.+-
T Consensus        66 ~~~i~G~NGsGKSTLlk~l~Gl   87 (290)
T 2bbs_A           66 LLAVAGSTGAGKTSLLMMIMGE   87 (290)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhcC
Confidence            5789999999999999998764

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=97.14  E-value=0.00027  Score=51.96  Aligned_cols=23  Identities=22%  Similarity=0.290  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCc
Q 030364           12 KLVLLGDMGTGKTSLVLRFVKGQ   34 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~~~   34 (178)
                      -++++|++|||||||++.+.+-.
T Consensus        56 i~~IiGpnGaGKSTLlr~i~GL~   78 (366)
T 3tui_C           56 IYGVIGASGAGKSTLIRCVNLLE   78 (366)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEEcCCCchHHHHHHHHhcCC
Confidence            57899999999999999988643

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=97.14  E-value=0.00047  Score=49.88  Aligned_cols=25  Identities=12%  Similarity=0.228  Sum_probs=21.3

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHHh
Q 030364            8 NIQVKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus         8 ~~~~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      ...+-|.|+|++|||||||++.+.+
T Consensus        90 ~~p~iigI~GpsGSGKSTl~~~L~~  114 (321)
T 3tqc_A           90 KVPYIIGIAGSVAVGKSTTSRVLKA  114 (321)
T ss_dssp             CCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            3467799999999999999998754

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=97.14  E-value=0.00027  Score=51.87  Aligned_cols=23  Identities=30%  Similarity=0.421  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCc
Q 030364           12 KLVLLGDMGTGKTSLVLRFVKGQ   34 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~~~   34 (178)
                      -++++|++|||||||++.+.+-.
T Consensus        43 ~~~llGpnGsGKSTLLr~iaGl~   65 (355)
T 1z47_A           43 MVGLLGPSGSGKTTILRLIAGLE   65 (355)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            57899999999999999988643

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=97.14  E-value=0.00037  Score=50.14  Aligned_cols=25  Identities=16%  Similarity=0.282  Sum_probs=21.7

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHHh
Q 030364            8 NIQVKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus         8 ~~~~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      .....|.|+|++|||||||++.|.+
T Consensus        78 ~~g~iigI~G~~GsGKSTl~~~L~~  102 (308)
T 1sq5_A           78 RIPYIISIAGSVAVGKSTTARVLQA  102 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            3456799999999999999998876

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=97.14  E-value=0.00032  Score=47.39  Aligned_cols=23  Identities=26%  Similarity=0.320  Sum_probs=20.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      ...|++.|.+||||||+.+.|..
T Consensus         9 ~~~I~l~G~~GsGKsT~~~~L~~   31 (215)
T 1nn5_A            9 GALIVLEGVDRAGKSTQSRKLVE   31 (215)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            56799999999999999999874

>3uc9_A Increased recombination centers protein 6; rossmann-fold, clathrin accessory factor; 1.80A {Saccharomyces cerevisiae}

Probab=97.14  E-value=0.0011  Score=45.41  Aligned_cols=24  Identities=21%  Similarity=0.182  Sum_probs=19.7

Q ss_pred             eeEEEEE--cCCCCCHHHHHHHHHhC
Q 030364           10 QVKLVLL--GDMGTGKTSLVLRFVKG   33 (178)
Q Consensus        10 ~~~i~v~--G~~~~GKStl~~~l~~~   33 (178)
                      +=||+|+  |+++.||++|++++++.
T Consensus        27 ~nkilvl~~~~~~~~~~~~~~~lf~~   52 (233)
T 3uc9_A           27 QNKILVLSDHPHNFLKTQFLQDLFHC   52 (233)
T ss_dssp             CCEEEEEEEGGGHHHHHHHHHHHHCC
T ss_pred             CCceEEEecCcccccHHHHHHHHhcc
Confidence            3356666  99999999999999975

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=97.13  E-value=0.00042  Score=46.62  Aligned_cols=25  Identities=24%  Similarity=0.227  Sum_probs=21.5

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHHh
Q 030364            8 NIQVKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus         8 ~~~~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      .....|+++|++||||||+++.+.+
T Consensus        20 ~~~~~i~i~G~~GsGKstl~~~l~~   44 (201)
T 1rz3_A           20 AGRLVLGIDGLSRSGKTTLANQLSQ   44 (201)
T ss_dssp             SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3456799999999999999998865

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=97.13  E-value=0.00028  Score=49.30  Aligned_cols=25  Identities=28%  Similarity=0.365  Sum_probs=21.6

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHHh
Q 030364            8 NIQVKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus         8 ~~~~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      .....|+++|++||||||+.+.|..
T Consensus        30 ~~~~~i~l~G~~GsGKSTla~~L~~   54 (253)
T 2p5t_B           30 KQPIAILLGGQSGAGKTTIHRIKQK   54 (253)
T ss_dssp             SSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3457899999999999999999865

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=97.12  E-value=0.00028  Score=51.84  Aligned_cols=22  Identities=36%  Similarity=0.460  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 030364           12 KLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      .++++|++|||||||++.+.+-
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl   52 (359)
T 2yyz_A           31 FVALLGPSGCGKTTTLLMLAGI   52 (359)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEEcCCCchHHHHHHHHHCC
Confidence            5789999999999999998874

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=97.12  E-value=0.00016  Score=51.98  Aligned_cols=22  Identities=27%  Similarity=0.576  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      =.++|+|++|||||||++.+.+
T Consensus        81 e~vaivG~sGsGKSTLl~ll~g  102 (306)
T 3nh6_A           81 QTLALVGPSGAGKSTILRLLFR  102 (306)
T ss_dssp             CEEEEESSSCHHHHHHHHHHTT
T ss_pred             CEEEEECCCCchHHHHHHHHHc
Confidence            3689999999999999998875

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=97.12  E-value=0.0003  Score=51.78  Aligned_cols=23  Identities=30%  Similarity=0.470  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCc
Q 030364           12 KLVLLGDMGTGKTSLVLRFVKGQ   34 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~~~   34 (178)
                      .++++|++|||||||++.+.+-.
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~   53 (362)
T 2it1_A           31 FMALLGPSGSGKSTLLYTIAGIY   53 (362)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCchHHHHHHHHhcCC
Confidence            57899999999999999988743

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=97.11  E-value=0.0003  Score=52.04  Aligned_cols=23  Identities=26%  Similarity=0.411  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCc
Q 030364           12 KLVLLGDMGTGKTSLVLRFVKGQ   34 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~~~   34 (178)
                      -++++|++|||||||++.+.+-.
T Consensus        31 ~~~llGpsGsGKSTLLr~iaGl~   53 (381)
T 3rlf_A           31 FVVFVGPSGCGKSTLLRMIAGLE   53 (381)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEEcCCCchHHHHHHHHHcCC
Confidence            47899999999999999988743

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=97.11  E-value=0.00013  Score=47.87  Aligned_cols=22  Identities=32%  Similarity=0.527  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 030364           12 KLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      .++|+|++|||||||++.+.+-
T Consensus         4 ~v~IvG~SGsGKSTL~~~L~~~   25 (171)
T 2f1r_A            4 ILSIVGTSDSGKTTLITRMMPI   25 (171)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6889999999999999998763

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=97.11  E-value=0.00033  Score=48.83  Aligned_cols=22  Identities=32%  Similarity=0.457  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 030364           12 KLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      .++++|++|+|||||++.+.+.
T Consensus        51 g~ll~G~~G~GKTtl~~~i~~~   72 (254)
T 1ixz_A           51 GVLLVGPPGVGKTHLARAVAGE   72 (254)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            3999999999999999998863

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=97.10  E-value=0.00044  Score=49.69  Aligned_cols=23  Identities=22%  Similarity=0.423  Sum_probs=20.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      .-.++++|++||||||+++.+.+
T Consensus       102 g~vi~lvG~nGsGKTTll~~Lag  124 (304)
T 1rj9_A          102 GRVVLVVGVNGVGKTTTIAKLGR  124 (304)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHHH
Confidence            45788999999999999999875

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=97.10  E-value=0.00022  Score=46.98  Aligned_cols=23  Identities=22%  Similarity=0.297  Sum_probs=16.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      .+.|++.|.+||||||+.+.|..
T Consensus         5 ~~~I~l~G~~GsGKST~a~~La~   27 (183)
T 2vli_A            5 SPIIWINGPFGVGKTHTAHTLHE   27 (183)
T ss_dssp             CCEEEEECCC----CHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999999864

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=97.09  E-value=0.00034  Score=48.88  Aligned_cols=21  Identities=19%  Similarity=0.445  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 030364           12 KLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~   32 (178)
                      -|+|+|++|||||||.+.|..
T Consensus         3 li~I~G~~GSGKSTla~~La~   23 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIAQ   23 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999999865

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=97.09  E-value=0.00042  Score=48.58  Aligned_cols=22  Identities=27%  Similarity=0.489  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      ..|+++|.+||||||+.+.|..
T Consensus         5 ~lIvl~G~pGSGKSTla~~La~   26 (260)
T 3a4m_A            5 MLIILTGLPGVGKSTFSKNLAK   26 (260)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHHH
Confidence            5799999999999999999875

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=97.09  E-value=0.0002  Score=45.91  Aligned_cols=23  Identities=26%  Similarity=0.476  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      -.++++|++|+|||||++.+.+.
T Consensus        37 ~~~~l~G~~G~GKTtL~~~i~~~   59 (149)
T 2kjq_A           37 QFIYVWGEEGAGKSHLLQAWVAQ   59 (149)
T ss_dssp             SEEEEESSSTTTTCHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            46889999999999999998863

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=97.09  E-value=0.00036  Score=46.55  Aligned_cols=23  Identities=22%  Similarity=0.433  Sum_probs=20.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      ...|+++|.+||||||+.+.|..
T Consensus        12 ~~~I~l~G~~GsGKsT~a~~L~~   34 (199)
T 2bwj_A           12 CKIIFIIGGPGSGKGTQCEKLVE   34 (199)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999998865

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=97.09  E-value=0.00032  Score=51.83  Aligned_cols=23  Identities=30%  Similarity=0.420  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCc
Q 030364           12 KLVLLGDMGTGKTSLVLRFVKGQ   34 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~~~   34 (178)
                      -++++|++|||||||++.+.+-.
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~   53 (372)
T 1g29_1           31 FMILLGPSGCGKTTTLRMIAGLE   53 (372)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCcHHHHHHHHHHcCC
Confidence            47899999999999999988643

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=97.09  E-value=0.0004  Score=48.46  Aligned_cols=22  Identities=23%  Similarity=0.338  Sum_probs=20.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHH
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFV   31 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~   31 (178)
                      ...|+|+|++||||||+++.|.
T Consensus        27 g~~I~I~G~~GsGKSTl~k~La   48 (252)
T 4e22_A           27 APVITVDGPSGAGKGTLCKALA   48 (252)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            4589999999999999999987

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=97.08  E-value=0.00033  Score=51.71  Aligned_cols=22  Identities=41%  Similarity=0.436  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 030364           12 KLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      .++++|++|||||||++.+.+-
T Consensus        39 ~~~llGpnGsGKSTLLr~iaGl   60 (372)
T 1v43_A           39 FLVLLGPSGCGKTTTLRMIAGL   60 (372)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCChHHHHHHHHHcC
Confidence            5789999999999999998874

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=97.08  E-value=0.00049  Score=45.28  Aligned_cols=24  Identities=25%  Similarity=0.350  Sum_probs=20.9

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      +...|+++|.+||||||+.+.|..
T Consensus         4 ~g~~i~l~G~~GsGKST~~~~L~~   27 (179)
T 2pez_A            4 RGCTVWLTGLSGAGKTTVSMALEE   27 (179)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            356789999999999999998875

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=97.07  E-value=0.00034  Score=46.23  Aligned_cols=22  Identities=41%  Similarity=0.573  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      ..|+++|.+||||||+.+.|..
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~   24 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIGRRLAK   24 (184)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            3599999999999999998865

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=97.05  E-value=0.0004  Score=45.28  Aligned_cols=21  Identities=19%  Similarity=0.450  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 030364           12 KLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~   32 (178)
                      .|++.|.+||||||+.+.|..
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~   24 (173)
T 1e6c_A            4 PIFMVGARGCGMTTVGRELAR   24 (173)
T ss_dssp             CEEEESCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999998865

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=97.05  E-value=0.00038  Score=49.98  Aligned_cols=23  Identities=22%  Similarity=0.417  Sum_probs=20.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      .--++++|++||||||+++.+.+
T Consensus       100 g~vi~lvG~nGsGKTTll~~Lag  122 (302)
T 3b9q_A          100 PAVIMIVGVNGGGKTTSLGKLAH  122 (302)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHH
Confidence            45788999999999999999876

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=97.05  E-value=0.00039  Score=51.41  Aligned_cols=23  Identities=17%  Similarity=0.443  Sum_probs=20.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      .-.++|+|++||||||+++.+.+
T Consensus       136 g~~i~ivG~~GsGKTTll~~l~~  158 (372)
T 2ewv_A          136 MGLILVTGPTGSGKSTTIASMID  158 (372)
T ss_dssp             SEEEEEECSSSSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHh
Confidence            34699999999999999999886

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=97.04  E-value=0.00048  Score=45.33  Aligned_cols=24  Identities=33%  Similarity=0.555  Sum_probs=20.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhC
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      .-.+++.|++|+|||++++.+...
T Consensus        43 ~~~~ll~G~~G~GKT~l~~~~~~~   66 (195)
T 1jbk_A           43 KNNPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHHH
Confidence            356899999999999999988753

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=97.03  E-value=0.00034  Score=51.52  Aligned_cols=23  Identities=30%  Similarity=0.593  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      -.++|+|++|||||||++.+.+-
T Consensus       176 ~~i~ivG~sGsGKSTll~~l~~~  198 (361)
T 2gza_A          176 RVIVVAGETGSGKTTLMKALMQE  198 (361)
T ss_dssp             CCEEEEESSSSCHHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHHhc
Confidence            47999999999999999999863

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=97.02  E-value=0.0004  Score=52.12  Aligned_cols=23  Identities=17%  Similarity=0.336  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      =.++|+|++||||||+++.+.+.
T Consensus       168 gii~I~GpnGSGKTTlL~allg~  190 (418)
T 1p9r_A          168 GIILVTGPTGSGKSTTLYAGLQE  190 (418)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHhh
Confidence            35899999999999999998864

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=97.01  E-value=0.00061  Score=46.30  Aligned_cols=23  Identities=26%  Similarity=0.564  Sum_probs=20.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      .+.|+|.|.+||||||+.+.|..
T Consensus         4 ~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            4 RYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999875

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=97.00  E-value=0.00031  Score=51.06  Aligned_cols=23  Identities=22%  Similarity=0.460  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      -.++|+|++|||||||++.+.+-
T Consensus       172 ~~v~i~G~~GsGKTTll~~l~g~  194 (330)
T 2pt7_A          172 KNVIVCGGTGSGKTTYIKSIMEF  194 (330)
T ss_dssp             CCEEEEESTTSCHHHHHHHGGGG
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            36899999999999999998864

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=97.00  E-value=0.00064  Score=48.81  Aligned_cols=32  Identities=28%  Similarity=0.515  Sum_probs=21.1

Q ss_pred             CcccCCCCceeEEEEEcCCCCCHHHHHHHHHh
Q 030364            1 MARTSNKNIQVKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus         1 m~~~~~~~~~~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      |..+.......-|+|+|++|||||+|...|..
T Consensus         1 ~~~~~~~~~~~~i~i~GptgsGKt~la~~La~   32 (316)
T 3foz_A            1 MSDISKASLPKAIFLMGPTASGKTALAIELRK   32 (316)
T ss_dssp             ------CCCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCccccCCCCcEEEEECCCccCHHHHHHHHHH
Confidence            33333333345678899999999999999875

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=97.00  E-value=0.00063  Score=49.40  Aligned_cols=90  Identities=12%  Similarity=0.053  Sum_probs=49.8

Q ss_pred             EEEEEeCCCchhhhccch------hhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccc
Q 030364           60 KFDIWDTAGQERYHSLAP------MYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKV  133 (178)
Q Consensus        60 ~~~i~d~~g~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~  133 (178)
                      .+.++|++|.........      ...-..|-.+++.|+....   .+......+....   ...++++||.|... .  
T Consensus       213 d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~---~~~~~~~~~~~~~---~it~iilTKlD~~a-~--  283 (328)
T 3e70_C          213 DVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN---AIVEQARQFNEAV---KIDGIILTKLDADA-R--  283 (328)
T ss_dssp             SEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT---HHHHHHHHHHHHS---CCCEEEEECGGGCS-C--
T ss_pred             hhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH---HHHHHHHHHHHhc---CCCEEEEeCcCCcc-c--
Confidence            345799998633222110      1122478889999987653   2223334444321   12378899999522 1  


Q ss_pred             CHHHHHHHHHHcCCeEEEEeCCCCCCHH
Q 030364          134 KNEEGELYAQENGLSFLETSAKSAHNVN  161 (178)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  161 (178)
                       .-.........+.|+..++  +|++++
T Consensus       284 -~G~~l~~~~~~~~pi~~i~--~Ge~v~  308 (328)
T 3e70_C          284 -GGAALSISYVIDAPILFVG--VGQGYD  308 (328)
T ss_dssp             -CHHHHHHHHHHTCCEEEEE--CSSSTT
T ss_pred             -hhHHHHHHHHHCCCEEEEe--CCCCcc
Confidence             1234455566788887777  555543

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.99  E-value=0.003  Score=46.03  Aligned_cols=20  Identities=35%  Similarity=0.650  Sum_probs=18.9

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q 030364           13 LVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        13 i~v~G~~~~GKStl~~~l~~   32 (178)
                      +++.|++|+||||+++.+.+
T Consensus        39 ~ll~Gp~G~GKTtl~~~la~   58 (354)
T 1sxj_E           39 LLLYGPNGTGKKTRCMALLE   58 (354)
T ss_dssp             EEEECSTTSSHHHHHHTHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            99999999999999998876

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=96.99  E-value=0.00026  Score=51.77  Aligned_cols=23  Identities=30%  Similarity=0.401  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCc
Q 030364           12 KLVLLGDMGTGKTSLVLRFVKGQ   34 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~~~   34 (178)
                      .++++|++|||||||++.+.+-.
T Consensus        28 ~~~llGpnGsGKSTLLr~iaGl~   50 (348)
T 3d31_A           28 YFVILGPTGAGKTLFLELIAGFH   50 (348)
T ss_dssp             EEEEECCCTHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCccHHHHHHHHHcCC
Confidence            57899999999999999988643

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=96.99  E-value=0.00059  Score=44.35  Aligned_cols=21  Identities=48%  Similarity=0.672  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 030364           12 KLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~   32 (178)
                      .|++.|.+||||||+.+.|..
T Consensus         9 ~i~l~G~~GsGKSTva~~La~   29 (168)
T 1zuh_A            9 HLVLIGFMGSGKSSLAQELGL   29 (168)
T ss_dssp             EEEEESCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            688999999999999998865

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=96.99  E-value=0.00049  Score=47.30  Aligned_cols=26  Identities=27%  Similarity=0.502  Sum_probs=22.2

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHHhC
Q 030364            8 NIQVKLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus         8 ~~~~~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      .+..-|++.|+.||||||+++.+.+.
T Consensus        18 ~~g~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           18 TQPFTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhc
Confidence            34678999999999999999988764

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=96.98  E-value=0.00049  Score=48.65  Aligned_cols=22  Identities=32%  Similarity=0.457  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 030364           12 KLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      .++++|++|+|||||++.+.+.
T Consensus        75 gvll~Gp~GtGKTtl~~~i~~~   96 (278)
T 1iy2_A           75 GVLLVGPPGVGKTHLARAVAGE   96 (278)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCcChHHHHHHHHHHH
Confidence            3999999999999999998863

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=96.96  E-value=0.00064  Score=47.38  Aligned_cols=24  Identities=21%  Similarity=0.350  Sum_probs=21.0

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      ..+.|+|.|.+||||||+.+.|..
T Consensus        21 ~~~iI~I~G~~GSGKST~a~~L~~   44 (252)
T 1uj2_A           21 EPFLIGVSGGTASGKSSVCAKIVQ   44 (252)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHH
Confidence            356899999999999999998865

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=96.96  E-value=0.00059  Score=44.67  Aligned_cols=22  Identities=27%  Similarity=0.394  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      ..+.++|.+|+|||||+.++..
T Consensus         5 ~~i~i~G~sGsGKTTl~~~L~~   26 (169)
T 1xjc_A            5 NVWQVVGYKHSGKTTLMEKWVA   26 (169)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            3588999999999999999875

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=96.96  E-value=0.0005  Score=50.04  Aligned_cols=23  Identities=30%  Similarity=0.391  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      -.++++|++|+|||||++.+.+.
T Consensus        52 ~~~ll~Gp~G~GKTTLa~~ia~~   74 (334)
T 1in4_A           52 DHVLLAGPPGLGKTTLAHIIASE   74 (334)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Confidence            35899999999999999998763

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=96.95  E-value=0.00045  Score=51.32  Aligned_cols=21  Identities=38%  Similarity=0.800  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 030364           12 KLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~   32 (178)
                      .++++|++|||||||++.+.+
T Consensus        49 ~~~llGpsGsGKSTLLr~iaG   69 (390)
T 3gd7_A           49 RVGLLGRTGSGKSTLLSAFLR   69 (390)
T ss_dssp             EEEEEESTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCChHHHHHHHHhC
Confidence            588999999999999999886

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=96.95  E-value=0.00055  Score=46.71  Aligned_cols=23  Identities=39%  Similarity=0.625  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      --++++|++|+|||||++.+...
T Consensus        24 ~~~~i~G~~GsGKTtl~~~l~~~   46 (235)
T 2w0m_A           24 FFIALTGEPGTGKTIFSLHFIAK   46 (235)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHH
Confidence            35788999999999999998853

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=96.95  E-value=0.00073  Score=47.95  Aligned_cols=24  Identities=33%  Similarity=0.329  Sum_probs=21.1

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      ..+.|+|.|.+||||||+.+.|..
T Consensus        74 ~~~iI~I~G~~GSGKSTva~~La~   97 (281)
T 2f6r_A           74 GLYVLGLTGISGSGKSSVAQRLKN   97 (281)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999998863

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=96.94  E-value=0.00054  Score=45.11  Aligned_cols=21  Identities=19%  Similarity=0.302  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 030364           12 KLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~   32 (178)
                      -.+|+|++|+|||||++.+..
T Consensus        28 ~~~i~G~NGsGKStll~ai~~   48 (182)
T 3kta_A           28 FTAIVGANGSGKSNIGDAILF   48 (182)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            468999999999999999865

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=96.94  E-value=0.00077  Score=45.61  Aligned_cols=24  Identities=21%  Similarity=0.340  Sum_probs=20.6

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      +...|+++|.+|+||||+.+.|..
T Consensus        24 ~~~~i~~~G~~GsGKsT~~~~l~~   47 (211)
T 1m7g_A           24 RGLTIWLTGLSASGKSTLAVELEH   47 (211)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHH
Confidence            356789999999999999998864

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=96.93  E-value=0.0002  Score=48.41  Aligned_cols=21  Identities=29%  Similarity=0.430  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 030364           12 KLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~   32 (178)
                      -|+|.|.+||||||+++.|..
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~   22 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSG   22 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            588999999999999999864

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=96.93  E-value=0.00088  Score=46.07  Aligned_cols=25  Identities=20%  Similarity=0.377  Sum_probs=21.6

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhC
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      +..-|++.|++||||||+++.|...
T Consensus        25 ~g~~i~i~G~~GsGKsT~~~~l~~~   49 (229)
T 4eaq_A           25 MSAFITFEGPEGSGKTTVINEVYHR   49 (229)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            4567999999999999999998753

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=96.93  E-value=0.00068  Score=46.75  Aligned_cols=24  Identities=25%  Similarity=0.358  Sum_probs=20.8

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      ..+.|++.|++||||||+.+.+..
T Consensus         8 ~~~~i~i~G~~GsGKsTla~~la~   31 (233)
T 3r20_A            8 GSLVVAVDGPAGTGKSSVSRGLAR   31 (233)
T ss_dssp             -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            357899999999999999998864

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=96.92  E-value=0.00046  Score=52.41  Aligned_cols=24  Identities=33%  Similarity=0.414  Sum_probs=21.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhC
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      .-.++|+|++|||||||++.+.+-
T Consensus       138 Ge~v~IvGpnGsGKSTLlr~L~Gl  161 (460)
T 2npi_A          138 GPRVVIVGGSQTGKTSLSRTLCSY  161 (460)
T ss_dssp             CCCEEEEESTTSSHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCc
Confidence            447899999999999999998874

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=96.92  E-value=0.00047  Score=53.07  Aligned_cols=23  Identities=17%  Similarity=0.336  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      ..++|+|++||||||+++.+.+-
T Consensus       261 ~~i~I~GptGSGKTTlL~aL~~~  283 (511)
T 2oap_1          261 FSAIVVGETASGKTTTLNAIMMF  283 (511)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGGG
T ss_pred             CEEEEECCCCCCHHHHHHHHHhh
Confidence            35999999999999999998863

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=96.88  E-value=0.00026  Score=51.90  Aligned_cols=23  Identities=26%  Similarity=0.424  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCc
Q 030364           12 KLVLLGDMGTGKTSLVLRFVKGQ   34 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~~~   34 (178)
                      .++++|++|||||||++.+.+-.
T Consensus        33 ~~~llGpnGsGKSTLLr~iaGl~   55 (353)
T 1oxx_K           33 RFGILGPSGAGKTTFMRIIAGLD   55 (353)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            57899999999999999988643

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=96.88  E-value=0.00064  Score=49.95  Aligned_cols=23  Identities=22%  Similarity=0.417  Sum_probs=20.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      .-.++++|++||||||+++.+.+
T Consensus       157 g~vi~lvG~nGsGKTTll~~Lag  179 (359)
T 2og2_A          157 PAVIMIVGVNGGGKTTSLGKLAH  179 (359)
T ss_dssp             SEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEEEcCCCChHHHHHHHHHh
Confidence            45789999999999999999876

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=96.86  E-value=0.00071  Score=47.18  Aligned_cols=24  Identities=29%  Similarity=0.398  Sum_probs=20.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhC
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      ...+++.|++|+|||++++.+.+.
T Consensus        45 ~~~vll~G~~GtGKT~la~~la~~   68 (257)
T 1lv7_A           45 PKGVLMVGPPGTGKTLLAKAIAGE   68 (257)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHH
Confidence            346999999999999999998753

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=96.86  E-value=0.00096  Score=44.62  Aligned_cols=24  Identities=21%  Similarity=0.392  Sum_probs=21.5

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      ..+.|.+.|.+||||||+.+.|..
T Consensus        11 ~~~iIgltG~~GSGKSTva~~L~~   34 (192)
T 2grj_A           11 HHMVIGVTGKIGTGKSTVCEILKN   34 (192)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHHH
Confidence            467899999999999999998875

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=96.85  E-value=0.00068  Score=47.29  Aligned_cols=23  Identities=30%  Similarity=0.476  Sum_probs=20.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      .-.|+++|++||||||+.+.|..
T Consensus        48 g~~i~l~G~~GsGKSTl~~~La~   70 (250)
T 3nwj_A           48 GRSMYLVGMMGSGKTTVGKIMAR   70 (250)
T ss_dssp             TCCEEEECSTTSCHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            34799999999999999998865

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=96.84  E-value=0.00071  Score=51.68  Aligned_cols=23  Identities=22%  Similarity=0.497  Sum_probs=20.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      .--++|+|++||||||+++.|.+
T Consensus       293 GeVI~LVGpNGSGKTTLl~~LAg  315 (503)
T 2yhs_A          293 PFVILMVGVNGVGKTTTIGKLAR  315 (503)
T ss_dssp             TEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCcccHHHHHHHHHH
Confidence            45789999999999999999875

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=96.84  E-value=0.00059  Score=44.72  Aligned_cols=24  Identities=38%  Similarity=0.544  Sum_probs=20.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhC
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      ...+++.|++|+|||++++.+...
T Consensus        43 ~~~vll~G~~G~GKT~la~~~~~~   66 (187)
T 2p65_A           43 KNNPILLGDPGVGKTAIVEGLAIK   66 (187)
T ss_dssp             SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHHH
Confidence            456899999999999999988653

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=96.83  E-value=0.00068  Score=48.34  Aligned_cols=22  Identities=18%  Similarity=0.308  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 030364           12 KLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      -++|+|++|+|||||+..+.+.
T Consensus        37 ~~~i~G~~G~GKTTl~~~ia~~   58 (296)
T 1cr0_A           37 VIMVTSGSGMGKSTFVRQQALQ   58 (296)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHH
Confidence            5789999999999999988764

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=96.82  E-value=0.00088  Score=45.86  Aligned_cols=23  Identities=22%  Similarity=0.335  Sum_probs=20.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      .-.+++.|++|+|||++++.+..
T Consensus        52 ~~~~ll~G~~G~GKT~la~~l~~   74 (242)
T 3bos_A           52 VQAIYLWGPVKSGRTHLIHAACA   74 (242)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999998875

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=96.82  E-value=0.00079  Score=43.10  Aligned_cols=19  Identities=32%  Similarity=0.620  Sum_probs=17.0

Q ss_pred             EEEEcCCCCCHHHHHHHHH
Q 030364           13 LVLLGDMGTGKTSLVLRFV   31 (178)
Q Consensus        13 i~v~G~~~~GKStl~~~l~   31 (178)
                      .+|+|+.|+||||++.++.
T Consensus        26 ~~I~G~NGsGKStil~Ai~   44 (149)
T 1f2t_A           26 NLIIGQNGSGKSSLLDAIL   44 (149)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            4789999999999999875

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=96.81  E-value=0.001  Score=45.86  Aligned_cols=26  Identities=19%  Similarity=0.345  Sum_probs=22.0

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHHh
Q 030364            7 KNIQVKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus         7 ~~~~~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      ..+...|.++|.+||||||+.+.|..
T Consensus        13 ~~~~~~i~i~G~~gsGKst~~~~l~~   38 (236)
T 1q3t_A           13 KMKTIQIAIDGPASSGKSTVAKIIAK   38 (236)
T ss_dssp             -CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence            34567899999999999999998875

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=96.80  E-value=0.00096  Score=44.68  Aligned_cols=23  Identities=35%  Similarity=0.479  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      ..+++.|++|+|||+|++.+...
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~   77 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANE   77 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            67999999999999999988753

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=96.80  E-value=0.0045  Score=45.59  Aligned_cols=21  Identities=33%  Similarity=0.450  Sum_probs=18.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHH
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFV   31 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~   31 (178)
                      .+ .+|+|++|+|||||++.++
T Consensus        24 g~-~~i~G~NGaGKTTll~ai~   44 (365)
T 3qf7_A           24 GI-TVVEGPNGAGKSSLFEAIS   44 (365)
T ss_dssp             EE-EEEECCTTSSHHHHHHHHH
T ss_pred             Ce-EEEECCCCCCHHHHHHHHH
Confidence            44 5589999999999999876

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=96.78  E-value=0.00092  Score=45.24  Aligned_cols=23  Identities=30%  Similarity=0.332  Sum_probs=20.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      .--++++|++|+|||||+..+..
T Consensus        20 G~~~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A           20 GVLTQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             TSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            33589999999999999999986

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=96.77  E-value=0.00055  Score=49.50  Aligned_cols=24  Identities=33%  Similarity=0.517  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCc
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVKGQ   34 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~~~   34 (178)
                      --++|+|..|||||||++.+.+..
T Consensus         5 ~v~~i~G~~GaGKTTll~~l~~~~   28 (318)
T 1nij_A            5 AVTLLTGFLGAGKTTLLRHILNEQ   28 (318)
T ss_dssp             EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred             cEEEEEecCCCCHHHHHHHHHhhc
Confidence            356788999999999999999753

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=96.77  E-value=0.00089  Score=49.02  Aligned_cols=24  Identities=21%  Similarity=0.446  Sum_probs=21.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCc
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVKGQ   34 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~~~   34 (178)
                      =++.++|++|+|||||++.+.+..
T Consensus        72 q~~gIiG~nGaGKTTLl~~I~g~~   95 (347)
T 2obl_A           72 QRIGIFAGSGVGKSTLLGMICNGA   95 (347)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            378999999999999999998764

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=96.77  E-value=0.00094  Score=45.92  Aligned_cols=23  Identities=22%  Similarity=0.341  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      --++++|++|+|||||+..+...
T Consensus        25 ~~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           25 SITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHHHH
Confidence            35889999999999999999874

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=96.76  E-value=0.0011  Score=47.28  Aligned_cols=22  Identities=23%  Similarity=0.478  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      ..|+++|.+||||||+.+.|..
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999875

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=96.75  E-value=0.0054  Score=44.42  Aligned_cols=24  Identities=25%  Similarity=0.289  Sum_probs=20.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhC
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      ...+++.|++|+|||++++.+...
T Consensus        55 ~~~vll~G~~GtGKT~la~~ia~~   78 (338)
T 3pfi_A           55 LDHILFSGPAGLGKTTLANIISYE   78 (338)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHH
Confidence            456999999999999999998653

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=96.75  E-value=0.00097  Score=51.72  Aligned_cols=25  Identities=24%  Similarity=0.318  Sum_probs=21.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCc
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVKGQ   34 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~~~   34 (178)
                      .=.++++|++|+|||||++.+.+-.
T Consensus        47 Ge~~~LvG~NGaGKSTLlk~l~Gl~   71 (538)
T 1yqt_A           47 GMVVGIVGPNGTGKSTAVKILAGQL   71 (538)
T ss_dssp             TSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3468999999999999999998743

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=96.74  E-value=0.0013  Score=47.86  Aligned_cols=22  Identities=32%  Similarity=0.579  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      .-|+|+|++|||||||...|..
T Consensus         8 ~lI~I~GptgSGKTtla~~La~   29 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAK   29 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCcCcHHHHHHHHHH
Confidence            4689999999999999998875

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=96.73  E-value=0.0012  Score=45.37  Aligned_cols=24  Identities=29%  Similarity=0.452  Sum_probs=20.5

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      ..+++.++|+|||||||+...|..
T Consensus         7 ~~~~~~~~G~pGsGKsT~a~~L~~   30 (230)
T 3gmt_A            7 HHMRLILLGAPGAGKGTQANFIKE   30 (230)
T ss_dssp             --CEEEEECCTTSCHHHHHHHHHH
T ss_pred             cccceeeECCCCCCHHHHHHHHHH
Confidence            478999999999999999998865

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=96.72  E-value=0.001  Score=50.80  Aligned_cols=22  Identities=32%  Similarity=0.513  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      -.++++|++|||||||++.+.+
T Consensus        30 e~~~liG~nGsGKSTLl~~l~G   51 (483)
T 3euj_A           30 LVTTLSGGNGAGKSTTMAGFVT   51 (483)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCcHHHHHHHHhc
Confidence            3578999999999999999886

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=96.68  E-value=0.0015  Score=46.67  Aligned_cols=25  Identities=20%  Similarity=0.282  Sum_probs=20.7

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhC
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      ...-+++.|+||+|||+|++.+...
T Consensus        35 ~p~~lLl~GppGtGKT~la~aiA~~   59 (293)
T 3t15_A           35 VPLILGIWGGKGQGKSFQCELVFRK   59 (293)
T ss_dssp             CCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3456788899999999999998753

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=96.68  E-value=0.0014  Score=46.78  Aligned_cols=25  Identities=28%  Similarity=0.551  Sum_probs=20.8

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHHh
Q 030364            8 NIQVKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus         8 ~~~~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      .....+++.|++|+|||++++.+..
T Consensus        65 ~~~~~vll~G~~GtGKT~la~~la~   89 (309)
T 3syl_A           65 TPTLHMSFTGNPGTGKTTVALKMAG   89 (309)
T ss_dssp             CCCCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHH
Confidence            3456899999999999999986654

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=96.67  E-value=0.0014  Score=48.57  Aligned_cols=24  Identities=21%  Similarity=0.382  Sum_probs=20.9

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      +.-.++++|++|+|||||++.+.+
T Consensus       168 ~~~~i~l~G~~GsGKSTl~~~l~~  191 (377)
T 1svm_A          168 KKRYWLFKGPIDSGKTTLAAALLE  191 (377)
T ss_dssp             TCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHh
Confidence            345789999999999999999885

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=96.66  E-value=0.0014  Score=41.59  Aligned_cols=24  Identities=21%  Similarity=0.252  Sum_probs=21.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhC
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      ...|++.|++|+|||++.+.+...
T Consensus        24 ~~~vll~G~~GtGKt~lA~~i~~~   47 (145)
T 3n70_A           24 DIAVWLYGAPGTGRMTGARYLHQF   47 (145)
T ss_dssp             CSCEEEESSTTSSHHHHHHHHHHS
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHh
Confidence            457999999999999999998764

>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A

Probab=96.66  E-value=0.0085  Score=41.88  Aligned_cols=65  Identities=11%  Similarity=0.055  Sum_probs=45.2

Q ss_pred             EEEEEEEeCCCchhhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCC
Q 030364           58 TIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVD  126 (178)
Q Consensus        58 ~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D  126 (178)
                      .+.+.++|+|+..  .......+..+|.+|++...+. .+...+....+.+... ..+.++.+|+|+.+
T Consensus       144 ~yD~viiD~pp~~--~~~~~~~l~~aD~vivv~~~~~-~s~~~~~~~~~~l~~~-~~~~~~~vv~N~~~  208 (267)
T 3k9g_A          144 KYDYIVIDTNPSL--DVTLKNALLCSDYVIIPMTAEK-WAVESLDLFNFFVRKL-NLFLPIFLIITRFK  208 (267)
T ss_dssp             TCSEEEEEECSSC--SHHHHHHHTTCSEEEEEEESCT-THHHHHHHHHHHHHTT-TCCCCEEEEEEEEC
T ss_pred             CCCEEEEECcCCc--cHHHHHHHHHCCeEEEEeCCCh-HHHHHHHHHHHHHHHH-hccCCEEEEEeccc
Confidence            3667899998753  2334556677999999999864 4566666666666554 34567789999984

>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*

Probab=96.66  E-value=0.0049  Score=46.55  Aligned_cols=25  Identities=20%  Similarity=0.252  Sum_probs=20.8

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHH
Q 030364            7 KNIQVKLVLLGDMGTGKTSLVLRFV   31 (178)
Q Consensus         7 ~~~~~~i~v~G~~~~GKStl~~~l~   31 (178)
                      ..+..-|.|+|+.++|||+|+|.|+
T Consensus        64 ~~~v~vvsv~G~~~~gks~l~N~ll   88 (457)
T 4ido_A           64 DKEVVAVSVAGAFRKGKSFLMDFML   88 (457)
T ss_dssp             TSBEEEEEEEEBTTSSHHHHHHHHH
T ss_pred             CCceEEEEEECCCCCchhHHHHHHH
Confidence            3456677899999999999999665

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=96.61  E-value=0.0016  Score=46.07  Aligned_cols=24  Identities=33%  Similarity=0.408  Sum_probs=20.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhC
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      ...+++.|++|+|||++++.+...
T Consensus        51 ~~~~ll~G~~GtGKT~la~~la~~   74 (285)
T 3h4m_A           51 PKGILLYGPPGTGKTLLAKAVATE   74 (285)
T ss_dssp             CSEEEEESSSSSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHH
Confidence            456999999999999999998753

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=96.61  E-value=0.0019  Score=46.74  Aligned_cols=22  Identities=27%  Similarity=0.540  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      ..|+|+|++|||||||...|..
T Consensus         6 ~~i~i~GptGsGKTtla~~La~   27 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALAD   27 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999998875

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=96.60  E-value=0.0013  Score=49.61  Aligned_cols=24  Identities=21%  Similarity=0.320  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCc
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVKGQ   34 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~~~   34 (178)
                      =+++++|++|+|||||++.+.+..
T Consensus       158 q~~~IvG~sGsGKSTLl~~Iag~~  181 (438)
T 2dpy_A          158 QRMGLFAGSGVGKSVLLGMMARYT  181 (438)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHhccc
Confidence            378999999999999999998754

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=96.59  E-value=0.0013  Score=51.72  Aligned_cols=25  Identities=28%  Similarity=0.324  Sum_probs=21.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCc
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVKGQ   34 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~~~   34 (178)
                      .=.++++|++|+|||||++.+.+-.
T Consensus       103 Gei~~LvGpNGaGKSTLLkiL~Gll  127 (608)
T 3j16_B          103 GQVLGLVGTNGIGKSTALKILAGKQ  127 (608)
T ss_dssp             TSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCEEEEECCCCChHHHHHHHHhcCC
Confidence            3468999999999999999998743

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=96.58  E-value=0.0016  Score=46.26  Aligned_cols=23  Identities=35%  Similarity=0.453  Sum_probs=20.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      ...+++.|++|+|||++++.+..
T Consensus        54 ~~~vll~Gp~GtGKT~la~~la~   76 (297)
T 3b9p_A           54 AKGLLLFGPPGNGKTLLARAVAT   76 (297)
T ss_dssp             CSEEEEESSSSSCHHHHHHHHHH
T ss_pred             CCeEEEECcCCCCHHHHHHHHHH
Confidence            45899999999999999999875

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=96.58  E-value=0.0015  Score=44.55  Aligned_cols=21  Identities=33%  Similarity=0.494  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 030364           12 KLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~   32 (178)
                      -+++.|++|+|||++++.+..
T Consensus        47 ~~ll~G~~G~GKT~l~~~~~~   67 (250)
T 1njg_A           47 AYLFSGTRGVGKTSIARLLAK   67 (250)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            588999999999999998875

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=96.58  E-value=0.0012  Score=51.74  Aligned_cols=22  Identities=23%  Similarity=0.466  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 030364           12 KLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      .++++|++|+|||||++.+.+-
T Consensus       371 ~~~ivG~sGsGKSTLl~~l~g~  392 (582)
T 3b60_A          371 TVALVGRSGSGKSTIASLITRF  392 (582)
T ss_dssp             EEEEEECTTSSHHHHHHHHTTT
T ss_pred             EEEEECCCCCCHHHHHHHHhhc
Confidence            7899999999999999998763

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=96.57  E-value=0.0019  Score=44.96  Aligned_cols=23  Identities=35%  Similarity=0.394  Sum_probs=20.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      ...+++.|++|+|||++++.+..
T Consensus        39 ~~~vll~G~~GtGKT~la~~la~   61 (262)
T 2qz4_A           39 PKGALLLGPPGCGKTLLAKAVAT   61 (262)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHH
Confidence            45689999999999999999875

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=96.57  E-value=0.0014  Score=51.40  Aligned_cols=23  Identities=26%  Similarity=0.495  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      =.++++|++|+|||||++.+.+-
T Consensus       370 ~~~~ivG~sGsGKSTll~~l~g~  392 (582)
T 3b5x_A          370 KTVALVGRSGSGKSTIANLFTRF  392 (582)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC
Confidence            37899999999999999998863

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=96.57  E-value=0.0024  Score=44.89  Aligned_cols=26  Identities=27%  Similarity=0.369  Sum_probs=22.4

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHHhC
Q 030364            8 NIQVKLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus         8 ~~~~~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      .+...+++.|++|+|||++++.+...
T Consensus        62 ~~~~~vLl~G~~GtGKT~la~~ia~~   87 (272)
T 1d2n_A           62 TPLVSVLLEGPPHSGKTALAAKIAEE   87 (272)
T ss_dssp             CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence            44678999999999999999998763

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=96.55  E-value=0.0024  Score=45.60  Aligned_cols=24  Identities=29%  Similarity=0.439  Sum_probs=20.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhC
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      .-.+++.|++|+|||++++.+...
T Consensus        47 ~~~~ll~G~~GtGKt~la~~la~~   70 (311)
T 4fcw_A           47 IGSFLFLGPTGVGKTELAKTLAAT   70 (311)
T ss_dssp             SEEEEEESCSSSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCcCHHHHHHHHHHH
Confidence            457999999999999999988763

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=96.55  E-value=0.0014  Score=46.30  Aligned_cols=21  Identities=29%  Similarity=0.389  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 030364           12 KLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~   32 (178)
                      -++|+|++|+|||||+..+..
T Consensus        32 i~~i~G~~GsGKTtl~~~l~~   52 (279)
T 1nlf_A           32 VGALVSPGGAGKSMLALQLAA   52 (279)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            578999999999999998875

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=96.54  E-value=0.0019  Score=50.09  Aligned_cols=25  Identities=28%  Similarity=0.360  Sum_probs=21.4

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhC
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      +.=-++++|++|+|||||++.+.+-
T Consensus        24 ~Gei~gLiGpNGaGKSTLlkiL~Gl   48 (538)
T 3ozx_A           24 NNTILGVLGKNGVGKTTVLKILAGE   48 (538)
T ss_dssp             TTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcC
Confidence            3446889999999999999998874

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=96.54  E-value=0.0014  Score=44.18  Aligned_cols=23  Identities=30%  Similarity=0.492  Sum_probs=19.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      .-.+++.|+||+|||+++..+..
T Consensus        58 kn~ili~GPPGtGKTt~a~ala~   80 (212)
T 1tue_A           58 KNCLVFCGPANTGKSYFGMSFIH   80 (212)
T ss_dssp             CSEEEEESCGGGCHHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHHH
Confidence            34599999999999999888765

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=96.52  E-value=0.0019  Score=46.21  Aligned_cols=24  Identities=25%  Similarity=0.353  Sum_probs=20.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhC
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      ...+++.|++|+|||++++.+...
T Consensus        49 ~~~vLL~Gp~GtGKT~la~ala~~   72 (301)
T 3cf0_A           49 SKGVLFYGPPGCGKTLLAKAIANE   72 (301)
T ss_dssp             CSEEEEECSSSSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCcCHHHHHHHHHHH
Confidence            456999999999999999998753

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=96.52  E-value=0.0017  Score=50.35  Aligned_cols=23  Identities=26%  Similarity=0.391  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCc
Q 030364           12 KLVLLGDMGTGKTSLVLRFVKGQ   34 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~~~   34 (178)
                      .++|+|++|+|||||++.+.+-.
T Consensus       314 ~~~i~G~NGsGKSTLlk~l~Gl~  336 (538)
T 1yqt_A          314 VIGIVGPNGIGKTTFVKMLAGVE  336 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68899999999999999998753

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=96.51  E-value=0.0025  Score=47.85  Aligned_cols=23  Identities=22%  Similarity=0.372  Sum_probs=20.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      ..-|+++|.+||||||+.+.|..
T Consensus       258 ~~lIil~G~pGSGKSTla~~L~~  280 (416)
T 3zvl_A          258 PEVVVAVGFPGAGKSTFIQEHLV  280 (416)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHTG
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            45688899999999999999875

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=96.50  E-value=0.0021  Score=43.12  Aligned_cols=21  Identities=24%  Similarity=0.362  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 030364           12 KLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~   32 (178)
                      .|.|.|.+||||||+.+.|..
T Consensus         4 ~i~i~G~~GsGKst~~~~la~   24 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAA   24 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999998865

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=96.50  E-value=0.0017  Score=46.88  Aligned_cols=23  Identities=30%  Similarity=0.434  Sum_probs=20.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      .-.+++.|++|+|||+|++.+.+
T Consensus        37 ~~~lll~G~~GtGKT~la~~i~~   59 (324)
T 1l8q_A           37 YNPIFIYGSVGTGKTHLLQAAGN   59 (324)
T ss_dssp             CSSEEEECSSSSSHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHH
Confidence            34689999999999999998875

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=96.50  E-value=0.0016  Score=51.29  Aligned_cols=25  Identities=28%  Similarity=0.331  Sum_probs=21.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCc
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVKGQ   34 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~~~   34 (178)
                      .=.++++|++|+|||||++.+.+-.
T Consensus       117 Ge~~~LiG~NGsGKSTLlkiL~Gll  141 (607)
T 3bk7_A          117 GMVVGIVGPNGTGKTTAVKILAGQL  141 (607)
T ss_dssp             TSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCChHHHHHHHHhCCC
Confidence            3468999999999999999988743

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=96.47  E-value=0.0028  Score=46.41  Aligned_cols=24  Identities=25%  Similarity=0.580  Sum_probs=20.7

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      ...+|+++|++|+||||+.+.|..
T Consensus        23 ~~~~i~l~G~~G~GKTTl~~~la~   46 (359)
T 2ga8_A           23 YRVCVILVGSPGSGKSTIAEELCQ   46 (359)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeeEEEEECCCCCcHHHHHHHHHH
Confidence            456899999999999999987765

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=96.47  E-value=0.0019  Score=50.82  Aligned_cols=23  Identities=26%  Similarity=0.391  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCc
Q 030364           12 KLVLLGDMGTGKTSLVLRFVKGQ   34 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~~~   34 (178)
                      .++++|++|+|||||++.+.+-.
T Consensus       384 i~~i~G~NGsGKSTLlk~l~Gl~  406 (607)
T 3bk7_A          384 VIGIVGPNGIGKTTFVKMLAGVE  406 (607)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57899999999999999998743

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=96.45  E-value=0.0016  Score=50.46  Aligned_cols=23  Identities=30%  Similarity=0.390  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCc
Q 030364           12 KLVLLGDMGTGKTSLVLRFVKGQ   34 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~~~   34 (178)
                      .++++|++|||||||++.+.+-.
T Consensus       296 i~~i~G~nGsGKSTLl~~l~Gl~  318 (538)
T 3ozx_A          296 IIGILGPNGIGKTTFARILVGEI  318 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999999998743

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=96.40  E-value=0.002  Score=46.08  Aligned_cols=85  Identities=14%  Similarity=0.075  Sum_probs=45.5

Q ss_pred             EEEEEEeCCCchhhhc--c--chhhhc--CCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccc
Q 030364           59 IKFDIWDTAGQERYHS--L--APMYYR--GAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRK  132 (178)
Q Consensus        59 ~~~~i~d~~g~~~~~~--~--~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~  132 (178)
                      +.+.++||+|......  +  ....+.  ..+..++|+|++..  ...+..+.+.+..  . + ..-+|.||.|....  
T Consensus       183 ~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~--~~~~~~~~~~~~~--l-~-~~giVltk~D~~~~--  254 (296)
T 2px0_A          183 YDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK--YEDMKHIVKRFSS--V-P-VNQYIFTKIDETTS--  254 (296)
T ss_dssp             SSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC--HHHHHHHTTTTSS--S-C-CCEEEEECTTTCSC--
T ss_pred             CCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--HHHHHHHHHHHhc--C-C-CCEEEEeCCCcccc--
Confidence            5678999999653321  1  111222  36778899987753  2223333222221  1 1 13466799996432  


Q ss_pred             cCHHHHHHHHHHcCCeEEEEe
Q 030364          133 VKNEEGELYAQENGLSFLETS  153 (178)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~S  153 (178)
                        ...........++|+..++
T Consensus       255 --~g~~~~~~~~~~~pi~~i~  273 (296)
T 2px0_A          255 --LGSVFNILAESKIGVGFMT  273 (296)
T ss_dssp             --CHHHHHHHHTCSCCCSEEC
T ss_pred             --hhHHHHHHHHHCcCEEEEE
Confidence              1244556666787765543

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=96.38  E-value=0.0014  Score=45.95  Aligned_cols=24  Identities=21%  Similarity=0.362  Sum_probs=20.8

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      +.+.|++.|.+||||||+++.|..
T Consensus        23 ~~~~I~ieG~~GsGKST~~~~L~~   46 (263)
T 1p5z_B           23 RIKKISIEGNIAAGKSTFVNILKQ   46 (263)
T ss_dssp             CCEEEEEECSTTSSHHHHHTTTGG
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999988764

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=96.37  E-value=0.0024  Score=45.91  Aligned_cols=86  Identities=17%  Similarity=0.137  Sum_probs=46.7

Q ss_pred             EEEEEEeCCCchhhhc--------cchh----hhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCC
Q 030364           59 IKFDIWDTAGQERYHS--------LAPM----YYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVD  126 (178)
Q Consensus        59 ~~~~i~d~~g~~~~~~--------~~~~----~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D  126 (178)
                      +.+.++|+||......        ....    .-..++.+++|+|+....  +.+.. ...+....  + ..-+|+||.|
T Consensus       187 ~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~~--~~l~~-a~~~~~~~--~-i~gvVlTk~D  260 (306)
T 1vma_A          187 KDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQ--NGLVQ-AKIFKEAV--N-VTGIILTKLD  260 (306)
T ss_dssp             CSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHH--HHHHH-HHHHHHHS--C-CCEEEEECGG
T ss_pred             CCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCCH--HHHHH-HHHHHhcC--C-CCEEEEeCCC
Confidence            4577999999622111        0000    112478899999987432  22221 23333221  1 2366789999


Q ss_pred             CccccccCHHHHHHHHHHcCCeEEEEeC
Q 030364          127 LEEKRKVKNEEGELYAQENGLSFLETSA  154 (178)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  154 (178)
                      ...  .  --.........+.|+..+..
T Consensus       261 ~~~--~--gG~~l~~~~~~~~Pi~~i~~  284 (306)
T 1vma_A          261 GTA--K--GGITLAIARELGIPIKFIGV  284 (306)
T ss_dssp             GCS--C--TTHHHHHHHHHCCCEEEEEC
T ss_pred             Ccc--c--hHHHHHHHHHHCCCEEEEeC
Confidence            532  1  12355666677888777653

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=96.37  E-value=0.0021  Score=47.15  Aligned_cols=23  Identities=30%  Similarity=0.443  Sum_probs=20.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      .-.++|.|++|+|||||++.+..
T Consensus        45 ~~~vli~G~~G~GKTtl~~~l~~   67 (386)
T 2qby_A           45 PNNIFIYGLTGTGKTAVVKFVLS   67 (386)
T ss_dssp             CCCEEEEECTTSSHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHH
Confidence            44789999999999999999875

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=96.35  E-value=0.0014  Score=51.51  Aligned_cols=23  Identities=35%  Similarity=0.561  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      =.++++|++|+|||||++.+.+-
T Consensus       382 ~~~~ivG~sGsGKSTll~~l~g~  404 (598)
T 3qf4_B          382 QKVALVGPTGSGKTTIVNLLMRF  404 (598)
T ss_dssp             CEEEEECCTTSSTTHHHHHHTTS
T ss_pred             CEEEEECCCCCcHHHHHHHHhcC
Confidence            37899999999999999988753

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=96.35  E-value=0.0035  Score=45.27  Aligned_cols=24  Identities=29%  Similarity=0.385  Sum_probs=21.2

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      +...+++.|+||+|||++++.+..
T Consensus        50 ~~~~vLl~GppGtGKT~la~aia~   73 (322)
T 3eie_A           50 PTSGILLYGPPGTGKSYLAKAVAT   73 (322)
T ss_dssp             CCCEEEEECSSSSCHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHH
Confidence            356799999999999999999875

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=96.34  E-value=0.0023  Score=44.05  Aligned_cols=21  Identities=38%  Similarity=0.539  Sum_probs=18.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 030364           12 KLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~   32 (178)
                      -++++|++|+|||||+..+..
T Consensus        25 ~~~i~G~~GsGKTtl~~~~~~   45 (247)
T 2dr3_A           25 VVLLSGGPGTGKTIFSQQFLW   45 (247)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            578999999999999877654

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=96.34  E-value=0.0023  Score=50.34  Aligned_cols=22  Identities=41%  Similarity=0.693  Sum_probs=19.9

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCc
Q 030364           13 LVLLGDMGTGKTSLVLRFVKGQ   34 (178)
Q Consensus        13 i~v~G~~~~GKStl~~~l~~~~   34 (178)
                      ++++|++|+|||||++.+.+-.
T Consensus       381 v~iiG~NGsGKSTLlk~l~Gl~  402 (608)
T 3j16_B          381 LVMMGENGTGKTTLIKLLAGAL  402 (608)
T ss_dssp             EEEESCTTSSHHHHHHHHHTSS
T ss_pred             EEEECCCCCcHHHHHHHHhcCC
Confidence            7899999999999999998754

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=96.34  E-value=0.0024  Score=42.89  Aligned_cols=24  Identities=29%  Similarity=0.583  Sum_probs=20.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhC
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      ...|+++|++|+|||+|...|...
T Consensus        34 g~~ilI~GpsGsGKStLA~~La~~   57 (205)
T 2qmh_A           34 GLGVLITGDSGVGKSETALELVQR   57 (205)
T ss_dssp             TEEEEEECCCTTTTHHHHHHHHTT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHh
Confidence            346899999999999999998754

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=96.33  E-value=0.0022  Score=46.94  Aligned_cols=24  Identities=29%  Similarity=0.441  Sum_probs=20.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhC
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      .--+.|+|++|+|||||+..+...
T Consensus       131 G~i~~I~G~~GsGKTTL~~~l~~~  154 (349)
T 1pzn_A          131 QAITEVFGEFGSGKTQLAHTLAVM  154 (349)
T ss_dssp             SEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            346789999999999999998864

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=96.33  E-value=0.0027  Score=46.72  Aligned_cols=22  Identities=36%  Similarity=0.471  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 030364           12 KLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      .++|.|++|+||||+++.+...
T Consensus        46 ~~li~G~~G~GKTtl~~~l~~~   67 (389)
T 1fnn_A           46 RATLLGRPGTGKTVTLRKLWEL   67 (389)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            6999999999999999998764

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=96.33  E-value=0.0026  Score=45.33  Aligned_cols=23  Identities=30%  Similarity=0.641  Sum_probs=20.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      ...+++.|++|+|||++++.+..
T Consensus        50 ~~~vll~G~~GtGKT~la~~la~   72 (310)
T 1ofh_A           50 PKNILMIGPTGVGKTEIARRLAK   72 (310)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999998875

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=96.32  E-value=0.0028  Score=42.72  Aligned_cols=19  Identities=32%  Similarity=0.620  Sum_probs=16.6

Q ss_pred             EEEEcCCCCCHHHHHHHHH
Q 030364           13 LVLLGDMGTGKTSLVLRFV   31 (178)
Q Consensus        13 i~v~G~~~~GKStl~~~l~   31 (178)
                      .+|+|+.|+||||++.++.
T Consensus        26 ~~I~G~NgsGKStil~ai~   44 (203)
T 3qks_A           26 NLIIGQNGSGKSSLLDAIL   44 (203)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHH
Confidence            4678999999999999764

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.32  E-value=0.0031  Score=47.48  Aligned_cols=25  Identities=28%  Similarity=0.290  Sum_probs=21.8

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhC
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      +...|++.|+||+|||++++++.+.
T Consensus       214 ~prGvLLyGPPGTGKTllAkAiA~e  238 (434)
T 4b4t_M          214 APKGALMYGPPGTGKTLLARACAAQ  238 (434)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CCCeeEEECcCCCCHHHHHHHHHHH
Confidence            3568999999999999999998863

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=96.31  E-value=0.0012  Score=51.67  Aligned_cols=22  Identities=23%  Similarity=0.428  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      =.++++|++|+|||||++.+.+
T Consensus       368 ~~~~ivG~sGsGKSTll~~l~g  389 (578)
T 4a82_A          368 ETVAFVGMSGGGKSTLINLIPR  389 (578)
T ss_dssp             CEEEEECSTTSSHHHHHTTTTT
T ss_pred             CEEEEECCCCChHHHHHHHHhc
Confidence            3789999999999999998775

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=96.29  E-value=0.0031  Score=52.11  Aligned_cols=24  Identities=29%  Similarity=0.520  Sum_probs=21.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCcC
Q 030364           12 KLVLLGDMGTGKTSLVLRFVKGQF   35 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~~~~   35 (178)
                      .++++|++|+|||||++.+.++..
T Consensus       463 ~v~LiGpNGsGKSTLLk~LagG~i  486 (986)
T 2iw3_A          463 RYGICGPNGCGKSTLMRAIANGQV  486 (986)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHTCS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCc
Confidence            689999999999999999997654

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=96.26  E-value=0.0033  Score=45.49  Aligned_cols=25  Identities=28%  Similarity=0.336  Sum_probs=21.5

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhC
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      +...|++.|+||+|||+|++.+...
T Consensus        44 ~~~~iLL~GppGtGKT~la~ala~~   68 (322)
T 1xwi_A           44 PWRGILLFGPPGTGKSYLAKAVATE   68 (322)
T ss_dssp             CCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred             CCceEEEECCCCccHHHHHHHHHHH
Confidence            3467999999999999999998753

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=96.26  E-value=0.0016  Score=51.04  Aligned_cols=21  Identities=29%  Similarity=0.596  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 030364           12 KLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~   32 (178)
                      .++++|++|+|||||++.+.+
T Consensus       371 ~~~ivG~sGsGKSTll~~l~g  391 (587)
T 3qf4_A          371 LVAVLGETGSGKSTLMNLIPR  391 (587)
T ss_dssp             EEEEECSSSSSHHHHHHTTTT
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            789999999999999998875

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.25  E-value=0.0028  Score=46.06  Aligned_cols=22  Identities=36%  Similarity=0.644  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 030364           12 KLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      ++++.|++|+||||+++.+.+.
T Consensus        48 ~~ll~Gp~G~GKTtla~~la~~   69 (340)
T 1sxj_C           48 HLLFYGPPGTGKTSTIVALARE   69 (340)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            3899999999999999998764

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.25  E-value=0.0036  Score=47.09  Aligned_cols=23  Identities=39%  Similarity=0.486  Sum_probs=20.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      ..-|++.|+||+|||++++++.+
T Consensus       206 prGiLL~GPPGtGKT~lakAiA~  228 (428)
T 4b4t_K          206 PRGVLLYGPPGTGKTMLVKAVAN  228 (428)
T ss_dssp             CCEEEEESCTTTTHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHH
Confidence            45699999999999999999875

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=96.24  E-value=0.0036  Score=43.18  Aligned_cols=23  Identities=26%  Similarity=0.486  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      ..|++.|..||||||+++.|...
T Consensus         3 ~~i~~~G~~g~GKtt~~~~l~~~   25 (241)
T 2ocp_A            3 RRLSIEGNIAVGKSTFVKLLTKT   25 (241)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHH
Confidence            56899999999999999998753

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=96.24  E-value=0.0031  Score=41.66  Aligned_cols=21  Identities=14%  Similarity=0.344  Sum_probs=19.0

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q 030364           13 LVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus        13 i~v~G~~~~GKStl~~~l~~~   33 (178)
                      ++|+|.++||||++..++...
T Consensus         2 ilV~Gg~~SGKS~~A~~la~~   22 (180)
T 1c9k_A            2 ILVTGGARSGKSRHAEALIGD   22 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCCcHHHHHHHHHhc
Confidence            789999999999999998754

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=96.23  E-value=0.0032  Score=42.66  Aligned_cols=22  Identities=23%  Similarity=0.481  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      +.|++.|.+||||||+.+.|..
T Consensus         4 ~~i~i~G~~gsGkst~~~~l~~   25 (219)
T 2h92_A            4 INIALDGPAAAGKSTIAKRVAS   25 (219)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998865

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.21  E-value=0.0038  Score=47.04  Aligned_cols=25  Identities=32%  Similarity=0.333  Sum_probs=21.8

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhC
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      +..-|++.|+||+|||+|++++.+.
T Consensus       214 ~prGvLL~GPPGtGKTllAkAiA~e  238 (437)
T 4b4t_L          214 PPKGVLLYGPPGTGKTLLAKAVAAT  238 (437)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHH
Confidence            4568999999999999999998763

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=96.19  E-value=0.0036  Score=44.98  Aligned_cols=23  Identities=43%  Similarity=0.639  Sum_probs=20.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      ...+++.|++|+|||+|+..+..
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~  174 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAH  174 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999998875

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=96.19  E-value=0.0019  Score=50.13  Aligned_cols=25  Identities=20%  Similarity=0.309  Sum_probs=21.6

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhC
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      +...|+++|.+|||||||++.|.+.
T Consensus       368 ~G~iI~LiG~sGSGKSTLar~La~~  392 (552)
T 3cr8_A          368 QGFTVFFTGLSGAGKSTLARALAAR  392 (552)
T ss_dssp             SCEEEEEEESSCHHHHHHHHHHHHH
T ss_pred             cceEEEEECCCCChHHHHHHHHHHh
Confidence            4567999999999999999998753

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=96.16  E-value=0.005  Score=42.13  Aligned_cols=26  Identities=19%  Similarity=0.160  Sum_probs=21.4

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHHh
Q 030364            7 KNIQVKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus         7 ~~~~~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      ..+..-|++.|.+||||||+++.|..
T Consensus        18 ~~~~~~i~~~G~~g~GKst~~~~l~~   43 (223)
T 3ld9_A           18 GPGSMFITFEGIDGSGKTTQSHLLAE   43 (223)
T ss_dssp             -CCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            34467799999999999999998864

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=96.15  E-value=0.0048  Score=41.90  Aligned_cols=24  Identities=21%  Similarity=0.228  Sum_probs=20.6

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      +.+-|++.|.+||||||+++.|..
T Consensus         5 ~g~~i~~eG~~gsGKsT~~~~l~~   28 (213)
T 4edh_A            5 TGLFVTLEGPEGAGKSTNRDYLAE   28 (213)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHH
Confidence            356788999999999999998864

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.14  E-value=0.0036  Score=45.50  Aligned_cols=22  Identities=41%  Similarity=0.665  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 030364           12 KLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      .+++.|++|+|||++++.+...
T Consensus        60 ~~ll~G~~G~GKT~la~~la~~   81 (353)
T 1sxj_D           60 HMLFYGPPGTGKTSTILALTKE   81 (353)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            3899999999999999988753

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=96.13  E-value=0.0015  Score=45.75  Aligned_cols=22  Identities=36%  Similarity=0.468  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 030364           12 KLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      .+++.|++|+|||++++.+...
T Consensus        46 ~vll~G~~GtGKT~la~~la~~   67 (268)
T 2r62_A           46 GVLLVGPPGTGKTLLAKAVAGE   67 (268)
T ss_dssp             CCCCBCSSCSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHH
Confidence            4889999999999999998763

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=96.12  E-value=0.0039  Score=40.88  Aligned_cols=23  Identities=22%  Similarity=0.530  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      .-|++.|++|+||||+.-.|...
T Consensus        17 ~gvli~G~SGaGKStlal~L~~r   39 (181)
T 3tqf_A           17 MGVLITGEANIGKSELSLALIDR   39 (181)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHHT
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHc
Confidence            46899999999999999998864

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=96.12  E-value=0.0031  Score=46.31  Aligned_cols=23  Identities=30%  Similarity=0.447  Sum_probs=20.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      .-.+++.|++|+|||++++.+..
T Consensus        44 ~~~vll~G~~G~GKT~l~~~~~~   66 (387)
T 2v1u_A           44 PSNALLYGLTGTGKTAVARLVLR   66 (387)
T ss_dssp             CCCEEECBCTTSSHHHHHHHHHH
T ss_pred             CCcEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999998875

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=96.11  E-value=0.0017  Score=46.26  Aligned_cols=23  Identities=17%  Similarity=0.375  Sum_probs=17.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      .+-|+|.|++||||||+.+.|..
T Consensus         5 ~~iIgItG~sGSGKSTva~~L~~   27 (290)
T 1a7j_A            5 HPIISVTGSSGAGTSTVKHTFDQ   27 (290)
T ss_dssp             SCEEEEESCC---CCTHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            45699999999999999998764

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=96.11  E-value=0.0051  Score=45.13  Aligned_cols=25  Identities=28%  Similarity=0.445  Sum_probs=21.6

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhC
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      +...+++.|+||+|||++.+.+...
T Consensus        50 ~~~~vll~GppGtGKT~la~~ia~~   74 (363)
T 3hws_A           50 GKSNILLIGPTGSGKTLLAETLARL   74 (363)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHH
Confidence            4568999999999999999998753

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=96.09  E-value=0.0043  Score=45.75  Aligned_cols=24  Identities=29%  Similarity=0.569  Sum_probs=21.0

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      ....+++.|++|+|||++++.+..
T Consensus        71 ~~~~ill~Gp~GtGKT~la~~la~   94 (376)
T 1um8_A           71 SKSNILLIGPTGSGKTLMAQTLAK   94 (376)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHH
Confidence            356799999999999999998875

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=96.07  E-value=0.0038  Score=47.93  Aligned_cols=22  Identities=32%  Similarity=0.457  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 030364           12 KLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      .++++|++|+|||+|++.+.+.
T Consensus        66 GvLL~GppGtGKTtLaraIa~~   87 (499)
T 2dhr_A           66 GVLLVGPPGVGKTHLARAVAGE   87 (499)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4999999999999999998763

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=96.06  E-value=0.004  Score=45.59  Aligned_cols=24  Identities=25%  Similarity=0.526  Sum_probs=20.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhC
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      .-.+++.|++|+|||++++.+...
T Consensus        70 ~~~vLl~GppGtGKT~la~~la~~   93 (368)
T 3uk6_A           70 GRAVLIAGQPGTGKTAIAMGMAQA   93 (368)
T ss_dssp             TCEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHH
Confidence            357999999999999999998753

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.06  E-value=0.0043  Score=46.22  Aligned_cols=25  Identities=32%  Similarity=0.368  Sum_probs=21.6

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhC
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      +...|++.|+||+|||.|++++.+.
T Consensus       181 ~prGvLL~GPPGTGKTllAkAiA~e  205 (405)
T 4b4t_J          181 QPKGVILYGPPGTGKTLLARAVAHH  205 (405)
T ss_dssp             CCCCEEEESCSSSSHHHHHHHHHHH
T ss_pred             CCCceEEeCCCCCCHHHHHHHHHHh
Confidence            3457999999999999999998763

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=96.06  E-value=0.0039  Score=47.13  Aligned_cols=23  Identities=30%  Similarity=0.444  Sum_probs=20.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      .-.+++.|++|+|||||++.+.+
T Consensus       130 ~~~lll~Gp~G~GKTtLa~aia~  152 (440)
T 2z4s_A          130 YNPLFIYGGVGLGKTHLLQSIGN  152 (440)
T ss_dssp             SCCEEEECSSSSSHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHH
Confidence            34689999999999999998875

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=96.06  E-value=0.0046  Score=44.49  Aligned_cols=22  Identities=23%  Similarity=0.376  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 030364           12 KLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      -|+|+|++|||||+|...|...
T Consensus         5 ~i~i~GptgsGKt~la~~La~~   26 (322)
T 3exa_A            5 LVAIVGPTAVGKTKTSVMLAKR   26 (322)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHT
T ss_pred             EEEEECCCcCCHHHHHHHHHHh
Confidence            5788999999999999998753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	178
d2fu5c1	173	c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta	3e-47
d1g16a_	166	c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye	6e-47
d2g6ba1	170	c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T	5e-46
d1z0fa1	166	c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta	2e-43
d2bcgy1	194	c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac	3e-43
d2ew1a1	171	c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta	5e-43
d1x3sa1	177	c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta	2e-41
d1yzqa1	164	c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta	5e-41
d3raba_	169	c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI	8e-41
d2f9la1	175	c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T	1e-40
d2a5ja1	173	c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta	3e-40
d1r2qa_	170	c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId:	9e-40
d2f7sa1	186	c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T	4e-38
d2bmea1	174	c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta	4e-38
d1kaoa_	167	c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId:	7e-36
d1z08a1	167	c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T	4e-35
d1ek0a_	170	c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces	6e-35
d2ngra_	191	c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId:	1e-34
d1mh1a_	183	c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96	7e-34
d1z0ja1	167	c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [	8e-34
d2atxa1	185	c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [Tax	1e-33
d1u8za_	168	c.37.1.8 (A:) Ras-related protein RalA {Cotton-top	4e-33
d1kmqa_	177	c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9	4e-33
d1wmsa_	174	c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId:	5e-33
d1z06a1	165	c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus)	5e-32
d1m7ba_	179	c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [T	2e-31
d2erya1	171	c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [	3e-31
d1ctqa_	166	c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi	6e-31
d2fn4a1	173	c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [T	1e-30
d1vg8a_	184	c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId	2e-30
d1c1ya_	167	c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId:	3e-30
d1z2aa1	164	c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [Ta	1e-29
d1x1ra1	169	c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRa	1e-28
d1r8sa_	160	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	1e-28
d2erxa1	171	c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [	2e-27
d1ky3a_	175	c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y	8e-27
d2atva1	168	c.37.1.8 (A:5-172) Ras-like estrogen-regulated gro	1e-26
d1xtqa1	167	c.37.1.8 (A:3-169) GTP-binding protein RheB {Human	2e-26
d1i2ma_	170	c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 96	3e-26
d1e0sa_	173	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	2e-25
d1moza_	182	c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea	3e-25
d1zj6a1	177	c.37.1.8 (A:2-178) ADP-ribosylation factor {Human	6e-25
d2gjsa1	168	c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [Tax	2e-24
d1ksha_	165	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	7e-23
d1fzqa_	176	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	2e-22
d2bmja1	175	c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {H	2e-22
d2g3ya1	172	c.37.1.8 (A:73-244) GTP-binding protein GEM {Human	4e-21
d1upta_	169	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	4e-21
d2bcjq2	200	c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha sub	8e-21
d1zd9a1	164	c.37.1.8 (A:18-181) ADP-ribosylation factor {Human	8e-21
d2qtvb1	166	c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom	4e-20
d1zcba2	200	c.37.1.8 (A:47-75,A:202-372) Transducin (alpha sub	4e-18
d1svsa1	195	c.37.1.8 (A:32-60,A:182-347) Transducin (alpha sub	3e-16
d1f6ba_	186	c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr	4e-16
d1azta2	221	c.37.1.8 (A:35-65,A:202-391) Transducin (alpha sub	2e-15
d2fh5b1	207	c.37.1.8 (B:63-269) Signal recognition particle re	2e-13
d2gj8a1	161	c.37.1.8 (A:216-376) Probable tRNA modification GT	8e-09
d1nrjb_	209	c.37.1.8 (B:) Signal recognition particle receptor	2e-08
d1tq4a_	400	c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (	5e-06
d1mkya2	186	c.37.1.8 (A:173-358) Probable GTPase Der, N-termin	1e-05
d1puia_	188	c.37.1.8 (A:) Probable GTPase EngB {Escherichia co	2e-05
d1udxa2	180	c.37.1.8 (A:157-336) Obg GTP-binding protein middl	4e-05
d2qn6a3	205	c.37.1.8 (A:2-206) Initiation factor eIF2 gamma su	4e-04
d1wf3a1	178	c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {	6e-04
d1mkya1	171	c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal	6e-04
d1svia_	195	c.37.1.8 (A:) Probable GTPase EngB {Bacillus subti	0.001
d1knqa_	171	c.37.1.17 (A:) Gluconate kinase {Escherichia coli	0.001
d2cxxa1	184	c.37.1.8 (A:2-185) GTP-binding protein engB {Pyroc	0.001
d1xzpa2	160	c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotog	0.001
d1egaa1	179	c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {	0.004

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  150 bits (379), Expect = 3e-47
 Identities = 62/156 (39%), Positives = 96/156 (61%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           KL+L+GD G GKT ++ RF +  F     STIG  F  + + L+   IK  IWDTAGQER
Sbjct: 8   KLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQER 67

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           + ++   YYRGA   ++VYDIT+  SF+  + W++ ++   + ++   ++ NK D+ +KR
Sbjct: 68  FRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKR 127

Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
           +V  E GE  A + G+ F+ETSAK+  NV   F+ +
Sbjct: 128 QVSKERGEKLALDYGIKFMETSAKANINVENAFFTL 163

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  149 bits (376), Expect = 6e-47
 Identities = 64/156 (41%), Positives = 98/156 (62%), Gaps = 1/156 (0%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K++L+GD G GK+ L++RFV+ +F     +TIG  F  + + +N   +K  IWDTAGQER
Sbjct: 4   KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER 63

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           + ++   YYRGA   ++VYDIT   +F   K+W + +    N    + LV NK D+ E R
Sbjct: 64  FRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETR 122

Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
            V  ++GE  A+E G+ F+E+SAK+  NVNE+F+ +
Sbjct: 123 VVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTL 158

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  146 bits (370), Expect = 5e-46
 Identities = 65/157 (41%), Positives = 98/157 (62%), Gaps = 1/157 (0%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQEST-IGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           K++L+GD G GKT L++RF  G F      + +G  F  +VL ++ V +K  +WDTAGQE
Sbjct: 8   KVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQE 67

Query: 71  RYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEK 130
           R+ S+   YYR A A +++YD+T+  SF+  + W+ E+      ++ + L+ NKVD   +
Sbjct: 68  RFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHE 127

Query: 131 RKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
           R VK E+GE  A+E GL F+ETSAK+  NV+  F  I
Sbjct: 128 RVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAI 164

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  140 bits (353), Expect = 2e-43
 Identities = 67/156 (42%), Positives = 99/156 (63%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K +++GDMG GK+ L+ +F + +F      TIG  F T+++ ++   IK  IWDTAGQER
Sbjct: 6   KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQER 65

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           + ++   YYRGAA A++VYDIT   ++     W+ + +   NPN ++ L+ NK DLE +R
Sbjct: 66  FRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQR 125

Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
            V  EE + +A+ENGL FLE SAK+  NV + F E 
Sbjct: 126 DVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEA 161

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  140 bits (354), Expect = 3e-43
 Identities = 63/156 (40%), Positives = 96/156 (61%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           KL+L+G+ G GK+ L+LRF    + +   STIG  F  + + L+  T+K  IWDTAGQER
Sbjct: 8   KLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQER 67

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           + ++   YYRG+   ++VYD+T  +SF   K W+QE+ R     ++  LV NK DL++KR
Sbjct: 68  FRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKR 127

Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
            V+ +  + +A  N + FLETSA  + NV + F  +
Sbjct: 128 VVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTM 163

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  139 bits (350), Expect = 5e-43
 Identities = 65/156 (41%), Positives = 100/156 (64%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K+VL+G+ G GKT LV RF +G F   Q +TIG  F  + + +N   +K  IWDTAGQER
Sbjct: 7   KIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQER 66

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           + S+   YYR A A ++ YDIT  +SF    +W++E+++  +  +I  LV NK+DL E+R
Sbjct: 67  FRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERR 126

Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
           +V  +  E +++   + +LETSAK + NV +LF ++
Sbjct: 127 EVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDL 162

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  135 bits (340), Expect = 2e-41
 Identities = 58/156 (37%), Positives = 92/156 (58%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K++++G+ G GK+SL+LRF    F     +TIG  F  + +S++    K  IWDTAGQER
Sbjct: 9   KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQER 68

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           + +L P YYRGA   ++VYD+T  D+F +   W+ EL+     N I+ ++      +E R
Sbjct: 69  FRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENR 128

Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
           +V   EG  +A+++ + F+E SAK+   V   F E+
Sbjct: 129 EVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEEL 164

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  133 bits (336), Expect = 5e-41
 Identities = 73/156 (46%), Positives = 109/156 (69%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           KLV LG+   GKTSL+ RF+   F +  ++TIG  F ++ + L + TI+  +WDTAGQER
Sbjct: 2   KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQER 61

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           + SL P Y R +AAAVVVYDIT+++SF++  KW+ +++ +   ++I+ LV NK DL +KR
Sbjct: 62  FRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKR 121

Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
           +V  EEGE  A+E  + F+ETSAK+ +NV +LF  +
Sbjct: 122 QVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 157

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  133 bits (335), Expect = 8e-41
 Identities = 58/156 (37%), Positives = 87/156 (55%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K++++G+   GKTS + R+    F     ST+G  F  + +  N+  IK  IWDTAGQER
Sbjct: 7   KILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQER 66

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           Y ++   YYRGA   +++YDIT+ +SF   + W  +++     N  + LV NK D+E++R
Sbjct: 67  YRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDER 126

Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
            V +E G   A   G  F E SAK   NV + F  +
Sbjct: 127 VVSSERGRQLADHLGFEFFEASAKDNINVKQTFERL 162

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  133 bits (335), Expect = 1e-40
 Identities = 69/156 (44%), Positives = 101/156 (64%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K+VL+GD G GK++L+ RF + +F    +STIG  F T+ + ++  TIK  IWDTAGQER
Sbjct: 6   KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQER 65

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           Y  +   YYRGA  A++VYDI    ++E  ++W++EL+   + N+++ LV NK DL   R
Sbjct: 66  YRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLR 125

Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
            V  +E   +A++N LSF+ETSA  + NV E F  I
Sbjct: 126 AVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNI 161

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  132 bits (332), Expect = 3e-40
 Identities = 68/156 (43%), Positives = 104/156 (66%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K +++GD G GK+ L+L+F   +F    + TIG  F  ++++++   IK  IWDTAGQE 
Sbjct: 5   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQES 64

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           + S+   YYRGAA A++VYDIT  ++F     W+++ ++  + N+++ L+ NK DLE +R
Sbjct: 65  FRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRR 124

Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
            VK EEGE +A+E+GL F+ETSAK+A NV E F   
Sbjct: 125 DVKREEGEAFAREHGLIFMETSAKTACNVEEAFINT 160

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  130 bits (328), Expect = 9e-40
 Identities = 106/162 (65%), Positives = 129/162 (79%)

Query: 6   NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWD 65
           NK  Q KLVLLG+   GK+SLVLRFVKGQF +FQESTIGAAF TQ + L++ T+KF+IWD
Sbjct: 2   NKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWD 61

Query: 66  TAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKV 125
           TAGQERYHSLAPMYYRGA AA+VVYDIT+ +SF RAK WV+ELQRQ +PN+++ L  NK 
Sbjct: 62  TAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKA 121

Query: 126 DLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
           DL  KR V  +E + YA +N L F+ETSAK++ NVNE+F  I
Sbjct: 122 DLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAI 163

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  127 bits (319), Expect = 4e-38
 Identities = 50/168 (29%), Positives = 85/168 (50%), Gaps = 11/168 (6%)

Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVL----------SLNEVTIK 60
           +KL+ LGD G GKT+ + R+   +F     +T+G  F  + +          S     + 
Sbjct: 6   IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVH 65

Query: 61  FDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLI-MF 119
             +WDTAGQER+ SL   ++R A   ++++D+TS  SF   + W+ +LQ         + 
Sbjct: 66  LQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV 125

Query: 120 LVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
           L+ NK DL ++R+V   +    A + G+ + ETSA +  NV +    +
Sbjct: 126 LIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETL 173

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  126 bits (318), Expect = 4e-38
 Identities = 63/156 (40%), Positives = 99/156 (63%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K +++G+ GTGK+ L+ +F++ +F D    TIG  F ++++++    +K  IWDTAGQER
Sbjct: 7   KFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQER 66

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           + S+   YYRGAA A++VYDITS +++     W+ + +   + N+++ L  NK DL+  R
Sbjct: 67  FRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADR 126

Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
           +V   E   +AQEN L FLETSA +  NV E F + 
Sbjct: 127 EVTFLEASRFAQENELMFLETSALTGENVEEAFVQC 162

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  120 bits (302), Expect = 7e-36
 Identities = 57/159 (35%), Positives = 92/159 (57%), Gaps = 2/159 (1%)

Query: 10  QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ 69
           + K+V+LG  G GK++L ++FV G F +  + TI   F+ + + ++      +I DTAG 
Sbjct: 3   EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGT 61

Query: 70  ERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQ-GNPNLIMFLVANKVDLE 128
           E++ S+  +Y +     ++VY + +  SF+  K    ++ R      + + LV NKVDLE
Sbjct: 62  EQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLE 121

Query: 129 EKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
            +R+V + EG   A+E G  F+ETSAKS   V+ELF EI
Sbjct: 122 SEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEI 160

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  118 bits (297), Expect = 4e-35
 Identities = 70/156 (44%), Positives = 104/156 (66%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K+VLLG+   GKTSLVLR+ + +F D   +T+GA+F T+ L++    +   IWDTAGQER
Sbjct: 5   KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQER 64

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           +H+L P+YYR +  A++VYDIT  DSF++ K WV+EL++     + + +V NK+DLE++R
Sbjct: 65  FHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKER 124

Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
            V  +E E YA+  G     TSAK    + ELF ++
Sbjct: 125 HVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDL 160

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  118 bits (296), Expect = 6e-35
 Identities = 90/160 (56%), Positives = 118/160 (73%), Gaps = 3/160 (1%)

Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +KLVLLG+   GK+S+VLRFV   F + +E TIGAAF TQ +++NE T+KF+IWDTAGQE
Sbjct: 4   IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQE 63

Query: 71  RYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDL--- 127
           R+ SLAPMYYR A AA+VVYD+T   SF +A+ WV+EL  Q + ++I+ LV NK+D+   
Sbjct: 64  RFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQE 123

Query: 128 EEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
             +RKV  EEGE  A+E GL F ETSAK+  NVN++F  I
Sbjct: 124 GGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGI 163

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Length = 191

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  118 bits (296), Expect = 1e-34
 Identities = 41/170 (24%), Positives = 69/170 (40%), Gaps = 14/170 (8%)

Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +K V++GD   GKT L++ +   +F      T+   +   V+   E      ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGE-PYTLGLFDTAGQE 62

Query: 71  RYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEK 130
            Y  L P+ Y      +V + + S  SFE  K+          P     LV  ++DL + 
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDD 122

Query: 131 RKVKN------------EEGELYAQE-NGLSFLETSAKSAHNVNELFYEI 167
                            E  E  A++   + ++E SA +   +  +F E 
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEA 172

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  116 bits (290), Expect = 7e-34
 Identities = 43/171 (25%), Positives = 76/171 (44%), Gaps = 14/171 (8%)

Query: 10  QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ 69
            +K V++GD   GKT L++ +    F      T+    ++  + ++   +   +WDTAGQ
Sbjct: 5   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFD-NYSANVMVDGKPVNLGLWDTAGQ 63

Query: 70  ERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEE 129
           E Y  L P+ Y     +++ + + S  SFE  +       R   PN  + LV  K+DL +
Sbjct: 64  EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 123

Query: 130 KRKVKNE------------EGELYAQENG-LSFLETSAKSAHNVNELFYEI 167
            +    +            +G   A+E G + +LE SA +   +  +F E 
Sbjct: 124 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEA 174

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  115 bits (288), Expect = 8e-34
 Identities = 75/158 (47%), Positives = 107/158 (67%)

Query: 10  QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ 69
           ++K+ LLGD G GK+S++ RFV+  F      TIGA+F T+ +       KF IWDTAG 
Sbjct: 4   ELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGL 63

Query: 70  ERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEE 129
           ER+ +LAPMYYRG+AAA++VYDIT  ++F   K WV+EL++ G P++++ +  NK DL +
Sbjct: 64  ERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTD 123

Query: 130 KRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
            R+V   + + YA      F+ETSAK+A N+NELF EI
Sbjct: 124 VREVMERDAKDYADSIHAIFVETSAKNAININELFIEI 161

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  115 bits (289), Expect = 1e-33
 Identities = 41/180 (22%), Positives = 80/180 (44%), Gaps = 15/180 (8%)

Query: 1   MARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIK 60
           MA      + +K V++GD   GKT L++ +    F +    T+    +   +++      
Sbjct: 1   MAHGPGA-LMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVF-DHYAVSVTVGGKQYL 58

Query: 61  FDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFL 120
             ++DTAGQE Y  L P+ Y      ++ + + +  SF+  K+      ++  PN+   L
Sbjct: 59  LGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLL 118

Query: 121 VANKVDLEEKRK------------VKNEEGELYAQENG-LSFLETSAKSAHNVNELFYEI 167
           +  ++DL +  K            +  E+G+  A+E G   ++E SA +   +  +F E 
Sbjct: 119 IGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEA 178

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

 Score =  113 bits (284), Expect = 4e-33
 Identities = 52/157 (33%), Positives = 96/157 (61%), Gaps = 2/157 (1%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K++++G  G GK++L L+F+  +F +  E T   ++  +V+  +   ++ DI DTAGQE 
Sbjct: 6   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVL-DGEEVQIDILDTAGQED 64

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQ-GNPNLIMFLVANKVDLEEK 130
           Y ++   Y+R     + V+ IT M+SF     + +++ R   + N+   LV NK DLE+K
Sbjct: 65  YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 124

Query: 131 RKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
           R+V  EE +  A +  ++++ETSAK+  NV+++F+++
Sbjct: 125 RQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDL 161

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  113 bits (284), Expect = 4e-33
 Identities = 49/172 (28%), Positives = 76/172 (44%), Gaps = 14/172 (8%)

Query: 9   IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAG 68
           I+ KLV++GD   GKT L++   K QF +    T+    +   + ++   ++  +WDTAG
Sbjct: 1   IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVF-ENYVADIEVDGKQVELALWDTAG 59

Query: 69  QERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLE 128
            E Y  L P+ Y      ++ + I S DS E   +      +   PN+ + LV NK DL 
Sbjct: 60  LEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR 119

Query: 129 EKRKVKN------------EEGELYAQENG-LSFLETSAKSAHNVNELFYEI 167
                +             EEG   A   G   ++E SAK+   V E+F   
Sbjct: 120 NDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMA 171

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  113 bits (284), Expect = 5e-33
 Identities = 52/167 (31%), Positives = 82/167 (49%), Gaps = 4/167 (2%)

Query: 5   SNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIW 64
           + K+   K++LLGD G GK+SL+ R+V  +F      TIG  F  + L ++   +   IW
Sbjct: 1   AGKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIW 60

Query: 65  DTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGN----PNLIMFL 120
           DTAGQER+ SL   +YRG+   ++ + +    SF+    W +E     +     +    +
Sbjct: 61  DTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVI 120

Query: 121 VANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
           + NK+D+ E++    E            + ETSAK A NV   F E 
Sbjct: 121 LGNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEA 167

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  110 bits (276), Expect = 5e-32
 Identities = 56/161 (34%), Positives = 87/161 (54%), Gaps = 5/161 (3%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K++++GD   GKT L  RF  G+F D  E+TIG  F  + + ++   IK  +WDTAGQER
Sbjct: 4   KIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQER 63

Query: 72  YHSL-APMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQ-GNPNLIMFLVANKVDLEE 129
           +       YYR   A V VYD+T+M SF     W++E ++     ++   LV NK DL  
Sbjct: 64  FRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRS 123

Query: 130 KRKVKNEEGELYAQENGLSFLETSAKSAH---NVNELFYEI 167
             +V  +  + +A  + +   ETSAK+ +   +V  +F  +
Sbjct: 124 AIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTL 164

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  109 bits (273), Expect = 2e-31
 Identities = 43/173 (24%), Positives = 84/173 (48%), Gaps = 15/173 (8%)

Query: 9   IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAG 68
           ++ K+V++GD   GKT+L+  F K  F +    T+    +T    ++   I+  +WDT+G
Sbjct: 1   VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVF-ENYTASFEIDTQRIELSLWDTSG 59

Query: 69  QERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLE 128
              Y ++ P+ Y  + A ++ +DI+  ++ +   K  +   ++  PN  M LV  K DL 
Sbjct: 60  SPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLR 119

Query: 129 E------------KRKVKNEEGELYAQENG-LSFLETSAKSAHN-VNELFYEI 167
                        +  V  ++G   A++ G  +++E SA  + N V ++F+  
Sbjct: 120 TDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVA 172

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  109 bits (272), Expect = 3e-31
 Identities = 49/159 (30%), Positives = 93/159 (58%), Gaps = 2/159 (1%)

Query: 10  QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ 69
           + +LV++G  G GK++L ++F++  F    + TI    +T+   +++   + DI DTAGQ
Sbjct: 5   KYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCVIDDRAARLDILDTAGQ 63

Query: 70  ERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQE-LQRQGNPNLIMFLVANKVDLE 128
           E + ++   Y R     ++V+ +T   SFE   K+ ++ L+ +      M L+ NK DL+
Sbjct: 64  EEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLD 123

Query: 129 EKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
            +R+V  EEG+  A++  ++++E SAK   NV++ F+E+
Sbjct: 124 HQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHEL 162

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  108 bits (269), Expect = 6e-31
 Identities = 50/159 (31%), Positives = 87/159 (54%), Gaps = 3/159 (1%)

Query: 10  QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ 69
           + KLV++G  G GK++L ++ ++  F D  + TI  ++  QV+   E T   DI DTAGQ
Sbjct: 3   EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGQ 61

Query: 70  ERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQ-GNPNLIMFLVANKVDLE 128
           E Y ++   Y R     + V+ I +  SFE   ++ ++++R   + ++ M LV NK DL 
Sbjct: 62  EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA 121

Query: 129 EKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
            +     +  +  A+  G+ ++ETSAK+   V + FY +
Sbjct: 122 ARTVESRQAQD-LARSYGIPYIETSAKTRQGVEDAFYTL 159

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  107 bits (268), Expect = 1e-30
 Identities = 46/159 (28%), Positives = 81/159 (50%), Gaps = 2/159 (1%)

Query: 10  QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ 69
             KLV++G  G GK++L ++F++  F            +T++ S++ +  + DI DTAGQ
Sbjct: 6   THKLVVVGGGGVGKSALTIQFIQSYFVS-DYDPTIEDSYTKICSVDGIPARLDILDTAGQ 64

Query: 70  ERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQ-GNPNLIMFLVANKVDLE 128
           E + ++   Y R     ++V+ I    SF    K   ++ R     +  + LV NK DLE
Sbjct: 65  EEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLE 124

Query: 129 EKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
            +R+V   E   +   + +++ E SAK   NV+E F ++
Sbjct: 125 SQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQL 163

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  107 bits (267), Expect = 2e-30
 Identities = 59/160 (36%), Positives = 94/160 (58%), Gaps = 4/160 (2%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K+++LGD G GKTSL+ ++V  +F +  ++TIGA F T+ + +++  +   IWDTAGQER
Sbjct: 4   KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQER 63

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNP----NLIMFLVANKVDL 127
           + SL   +YRGA   V+V+D+T+ ++F+    W  E   Q +P    N    ++ NK+DL
Sbjct: 64  FQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDL 123

Query: 128 EEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
           E ++            +N + + ETSAK A NV + F  I
Sbjct: 124 ENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTI 163

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  106 bits (265), Expect = 3e-30
 Identities = 56/160 (35%), Positives = 95/160 (59%), Gaps = 3/160 (1%)

Query: 10  QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ 69
           + KLV+LG  G GK++L ++FV+G F +  + TI  ++  QV    +     +I DTAG 
Sbjct: 3   EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQ-QCMLEILDTAGT 61

Query: 70  ERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQ-GNPNLIMFLVANKVDLE 128
           E++ ++  +Y +      +VY IT+  +F   +   +++ R     ++ M LV NK DLE
Sbjct: 62  EQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLE 121

Query: 129 EKRKVKNEEGELYAQE-NGLSFLETSAKSAHNVNELFYEI 167
           ++R V  E+G+  A++    +FLE+SAKS  NVNE+FY++
Sbjct: 122 DERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDL 161

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  104 bits (260), Expect = 1e-29
 Identities = 56/159 (35%), Positives = 90/159 (56%), Gaps = 1/159 (0%)

Query: 9   IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAG 68
           + +K+V++G+   GK+S++ R+ KG F    + TIG  F  + + +N+  ++  +WDTAG
Sbjct: 1   VAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAG 60

Query: 69  QERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLE 128
           QE + ++   YYRGA A V+V+  T  +SF  A    +E       ++   LV NK+DL 
Sbjct: 61  QEEFDAITKAYYRGAQACVLVFSTTDRESF-EAISSWREKVVAEVGDIPTALVQNKIDLL 119

Query: 129 EKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
           +   +KNEE E  A+   L F  TS K   NV+E+F  +
Sbjct: 120 DDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYL 158

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  102 bits (254), Expect = 1e-28
 Identities = 53/158 (33%), Positives = 88/158 (55%), Gaps = 3/158 (1%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           KLV++GD G GK++L ++F +  F    + TI  ++       N+     D+ DTAGQE 
Sbjct: 6   KLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQ-WAILDVLDTAGQEE 64

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEK 130
           + ++   Y R     ++VY +T   SFE   ++ Q + R +   +  M LVANKVDL   
Sbjct: 65  FSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHL 124

Query: 131 RKVKNEEGELYAQENGLSFLETSAKSA-HNVNELFYEI 167
           RKV  ++G+  A +  + ++ETSAK    NV++ F+++
Sbjct: 125 RKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDL 162

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

 Score =  102 bits (253), Expect = 1e-28
 Identities = 25/160 (15%), Positives = 59/160 (36%), Gaps = 9/160 (5%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           +++++G    GKT+++ +   G+       T        V ++    I F +WD  GQ++
Sbjct: 2   RILMVGLDAAGKTTILYKLKLGEI-----VTTIPTIGFNVETVEYKNISFTVWDVGGQDK 56

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVA----NKVDL 127
              L   Y++     + V D    +    A++ +  +  +      + LV     +  + 
Sbjct: 57  IRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA 116

Query: 128 EEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
               ++ ++ G    +        T A S   + E    +
Sbjct: 117 MNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWL 156

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 99.3 bits (246), Expect = 2e-27
 Identities = 51/158 (32%), Positives = 80/158 (50%), Gaps = 3/158 (1%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           ++ + G  G GK+SLVLRFVKG F +    T+   +   +     +     I DT G  +
Sbjct: 4   RVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSI-CTLQITDTTGSHQ 62

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGN--PNLIMFLVANKVDLEE 129
           + ++  +      A ++VY ITS  S E  K   +++        ++ + LV NK D   
Sbjct: 63  FPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESP 122

Query: 130 KRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
            R+V++ E E  A+    +F+ETSAK  HNV ELF E+
Sbjct: 123 SREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQEL 160

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 97.8 bits (242), Expect = 8e-27
 Identities = 57/163 (34%), Positives = 88/163 (53%), Gaps = 7/163 (4%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIG-AAFFTQVLSLNEVTIKFDIWDTAGQE 70
           K+++LGD G GKTSL+ R+V  ++    ++TIG      +V    +      +WDTAGQE
Sbjct: 4   KVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQE 63

Query: 71  RYHSLAPMYYRGAAAAVVVYDITSMDSFE----RAKKWVQELQRQGNPNLIMFLVANKVD 126
           R+ SL   +YRGA   V+VYD+T+  SFE       +++              ++ NK+D
Sbjct: 64  RFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKID 123

Query: 127 LEEKRKVKNE-EGELYAQENG-LSFLETSAKSAHNVNELFYEI 167
            EE +K+ +E   +  A+  G +    TSAK+A NV+  F EI
Sbjct: 124 AEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEI 166

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.0 bits (240), Expect = 1e-26
 Identities = 55/160 (34%), Positives = 85/160 (53%), Gaps = 4/160 (2%)

Query: 10  QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ 69
           +VKL + G  G GK++LV+RF+  +F    + T+ + +  Q  ++++  +  +I DTAGQ
Sbjct: 2   EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQA-TIDDEVVSMEILDTAGQ 60

Query: 70  ERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQ-ELQRQGNPNLIMFLVANKVDLE 128
           E        + R     V+VYDIT   SFE          + +   N+ + LV NK DL+
Sbjct: 61  EDTIQ-REGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLD 119

Query: 129 EKRKVKNEEGELYAQENGLSFLETSAKSAH-NVNELFYEI 167
             R+V  EEGE  A E   +F E SA +   N+ E+FYE+
Sbjct: 120 HSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYEL 159

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 96.3 bits (238), Expect = 2e-26
 Identities = 53/162 (32%), Positives = 82/162 (50%), Gaps = 2/162 (1%)

Query: 7   KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDT 66
           ++   K+ +LG    GK+SL ++FV+GQF D  + TI   F   + ++N       + DT
Sbjct: 1   QSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLI-TVNGQEYHLQLVDT 59

Query: 67  AGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWV-QELQRQGNPNLIMFLVANKV 125
           AGQ+ Y      Y       ++VY +TS+ SFE  K    + L   G   + + LV NK 
Sbjct: 60  AGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKK 119

Query: 126 DLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
           DL  +R +  EEG+  A+    +FLE+SAK      ++F  I
Sbjct: 120 DLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRI 161

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 96.3 bits (238), Expect = 3e-26
 Identities = 52/159 (32%), Positives = 90/159 (56%), Gaps = 3/159 (1%)

Query: 9   IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAG 68
           +Q KLVL+GD GTGKT+ V R + G+F     +T+G      V   N   IKF++WDTAG
Sbjct: 2   VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAG 61

Query: 69  QERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLE 128
           QE++  L   YY  A  A++++D+TS  +++    W ++   +   N+ + L  NKVD++
Sbjct: 62  QEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRD-LVRVCENIPIVLCGNKVDIK 120

Query: 129 EKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
           +++        ++ ++  L + + SAKS +N  + F  +
Sbjct: 121 DRKVKAKS--IVFHRKKNLQYYDISAKSNYNFEKPFLWL 157

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

 Score = 94.3 bits (233), Expect = 2e-25
 Identities = 35/162 (21%), Positives = 69/162 (42%), Gaps = 9/162 (5%)

Query: 10  QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ 69
           ++++++LG    GKT+++ +   GQ       T+G    T         +KF++WD  GQ
Sbjct: 12  EMRILMLGLDAAGKTTILYKLKLGQSVTTIP-TVGFNVETV----TYKNVKFNVWDVGGQ 66

Query: 70  ERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQ-GNPNLIMFLVANKVDLE 128
           ++   L   YY G    + V D    D  + A++ +  +       + I+ + ANK DL 
Sbjct: 67  DKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLP 126

Query: 129 EKRK---VKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
           +  K   ++ + G    ++       + A S   + E    +
Sbjct: 127 DAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWL 168

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

 Score = 93.9 bits (232), Expect = 3e-25
 Identities = 39/166 (23%), Positives = 70/166 (42%), Gaps = 9/166 (5%)

Query: 6   NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWD 65
             N ++++++LG  G GKT+++ R   G+    +  TIG    T    L+   +K ++WD
Sbjct: 13  GSNKELRILILGLDGAGKTTILYRLQIGEVVTTK-PTIGFNVET----LSYKNLKLNVWD 67

Query: 66  TAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQ-GNPNLIMFLVANK 124
             GQ         YY   AA + V D T  D    A K +  + ++    +  + + ANK
Sbjct: 68  LGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANK 127

Query: 125 VDLE---EKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
            D        +V  E   +  ++   S + +SA     + E    +
Sbjct: 128 QDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWL 173

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

 Score = 93.1 bits (230), Expect = 6e-25
 Identities = 27/162 (16%), Positives = 60/162 (37%), Gaps = 9/162 (5%)

Query: 10  QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ 69
           + K++++G    GKT+++ +F   +              + V  +     +F +WD  GQ
Sbjct: 15  EHKVIIVGLDNAGKTTILYQFSMNEV-----VHTSPTIGSNVEEIVINNTRFLMWDIGGQ 69

Query: 70  ERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFL-VANKVDLE 128
           E   S    YY      +VV D T  +     ++ + ++    +      L  ANK D++
Sbjct: 70  ESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVK 129

Query: 129 EK---RKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
           E     ++         +++        A +   + +    +
Sbjct: 130 ECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWM 171

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.3 bits (225), Expect = 2e-24
 Identities = 45/157 (28%), Positives = 71/157 (45%), Gaps = 3/157 (1%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K++LLG  G GK++L   F      D  E+      + + + ++       ++D   Q+ 
Sbjct: 3   KVLLLGAPGVGKSALARIFGG--VEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDG 60

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFL-VANKVDLEEK 130
              L         A V+VY +T   SFE+A +   +L+R    + +  + V NK DL   
Sbjct: 61  GRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRS 120

Query: 131 RKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
           R+V  +EG   A      F+ETSA   HNV  LF  +
Sbjct: 121 REVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGV 157

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

 Score = 87.4 bits (215), Expect = 7e-23
 Identities = 29/162 (17%), Positives = 58/162 (35%), Gaps = 9/162 (5%)

Query: 10  QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ 69
           +++L++LG    GKT+++ +F           TI       + +L     K +IWD  GQ
Sbjct: 2   ELRLLMLGLDNAGKTTILKKFNGEDV-----DTISPTLGFNIKTLEHRGFKLNIWDVGGQ 56

Query: 70  ERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQ-GNPNLIMFLVANKVDLE 128
           +   S    Y+      + V D       +  ++ +Q L  +       + + ANK DL 
Sbjct: 57  KSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLP 116

Query: 129 EKRKV---KNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
                   +        + +       SA +  ++      +
Sbjct: 117 GALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWL 158

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

 Score = 86.6 bits (213), Expect = 2e-22
 Identities = 31/167 (18%), Positives = 58/167 (34%), Gaps = 9/167 (5%)

Query: 5   SNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIW 64
           S  + +V+++LLG    GKT+L+ +            T G    +          K ++W
Sbjct: 11  SAPDQEVRILLLGLDNAGKTTLLKQLASEDI-SHITPTQGFNIKSV----QSQGFKLNVW 65

Query: 65  DTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQ-GNPNLIMFLVAN 123
           D  GQ +       Y+      + V D      FE   + + EL  +     + + + AN
Sbjct: 66  DIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFAN 125

Query: 124 KVDLEEKR---KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
           K DL       ++         ++        SA +   V +    +
Sbjct: 126 KQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWV 172

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.6 bits (213), Expect = 2e-22
 Identities = 33/161 (20%), Positives = 64/161 (39%), Gaps = 7/161 (4%)

Query: 10  QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ 69
           +++L +LGD  +GK+SL+ RF+ G +   +     +  + + + ++  T    I + AG 
Sbjct: 5   ELRLGVLGDARSGKSSLIHRFLTGSYQVLE--KTESEQYKKEMLVDGQTHLVLIREEAGA 62

Query: 70  ERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEE 129
                    +         + D  S  +  R    +  L+ +G   L + LV  +  +  
Sbjct: 63  PDAKF--SGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISA 120

Query: 130 KRKVKNEEG---ELYAQENGLSFLETSAKSAHNVNELFYEI 167
                  +     L A     S+ ET A    NV+ +F E+
Sbjct: 121 SSPRVVGDARARALCADMKRCSYYETCATYGLNVDRVFQEV 161

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} Length = 172

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.3 bits (204), Expect = 4e-21
 Identities = 45/163 (27%), Positives = 73/163 (44%), Gaps = 3/163 (1%)

Query: 8   NIQVKLVLLGDMGTGKTSLVLRFVKGQF-FDFQESTIGAAFFTQVLSLNEVTIKFDIWDT 66
           N   ++VL+G+ G GK++L   F       D     +G   + + L ++  +    + D 
Sbjct: 1   NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDM 60

Query: 67  A-GQERYHSLAPMYYRGAAAAVVVYDITSMDSF-ERAKKWVQELQRQGNPNLIMFLVANK 124
              +     L     +   A ++VY IT   SF + ++  +Q  + +   ++ + LV NK
Sbjct: 61  WENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNK 120

Query: 125 VDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
            DL   R+V   EG   A      F+ETSA   HNV ELF  I
Sbjct: 121 SDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGI 163

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

 Score = 82.8 bits (203), Expect = 4e-21
 Identities = 34/162 (20%), Positives = 63/162 (38%), Gaps = 9/162 (5%)

Query: 10  QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ 69
           ++++++LG  G GKT+++ R   G+       T        V ++    +KF +WD  G 
Sbjct: 5   EMRILILGLDGAGKTTILYRLQVGEV-----VTTIPTIGFNVETVTYKNLKFQVWDLGGL 59

Query: 70  ERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQ-GNPNLIMFLVANKVDLE 128
                    YY    A + V D    D    +K  +  +  +      I+ + ANK D+E
Sbjct: 60  TSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDME 119

Query: 129 EKRKVK---NEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
           +        N  G    ++      +TSA     ++E    +
Sbjct: 120 QAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWL 161

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 83.1 bits (204), Expect = 8e-21
 Identities = 28/197 (14%), Positives = 62/197 (31%), Gaps = 43/197 (21%)

Query: 10  QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ 69
           ++KL+LLG   +GK++ + +            T G   +      +  ++ F + D  GQ
Sbjct: 2   ELKLLLLGTGESGKSTFIKQMRIIHGS--GVPTTGIIEYP----FDLQSVIFRMVDVGGQ 55

Query: 70  ERYHSLAPMYYRGAAAAVVVYDITSMDS-----------FERAKKWVQELQRQGNPNLIM 118
                     +    + + +  ++  D             E    +   +      N  +
Sbjct: 56  RSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSV 115

Query: 119 FLVANKVDLEEKRKVKNEEGELYAQENG--------------------------LSFLET 152
            L  NK DL E++ + +   + + + +G                          +    T
Sbjct: 116 ILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFT 175

Query: 153 SAKSAHNVNELFYEIGD 169
            A    N+  +F  + D
Sbjct: 176 CATDTENIRFVFAAVKD 192

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

 Score = 82.0 bits (201), Expect = 8e-21
 Identities = 35/162 (21%), Positives = 69/162 (42%), Gaps = 8/162 (4%)

Query: 10  QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ 69
           +++L L+G   +GKT+ V     GQF +    T+G         + +  +   +WD  GQ
Sbjct: 2   EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK----ITKGNVTIKLWDIGGQ 57

Query: 70  ERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNP-NLIMFLVANKVDLE 128
            R+ S+   Y RG +A V + D    +  E +K  +  L  +     + + ++ NK DL 
Sbjct: 58  PRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLP 117

Query: 129 E---KRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
               ++++  +      Q+  +     S K   N++     +
Sbjct: 118 GALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWL 159

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 80.5 bits (197), Expect = 4e-20
 Identities = 28/164 (17%), Positives = 52/164 (31%), Gaps = 16/164 (9%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           KL+ LG    GKT+L+      +      +T+   +      L    IKF  +D  G  +
Sbjct: 2   KLLFLGLDNAGKTTLLHMLKNDRL-----ATLQPTWHPTSEELAIGNIKFTTFDLGGHIQ 56

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQ-GNPNLIMFLVANKVDLEEK 130
              L   Y+      V + D    + F+ A+  +  L       ++   ++ NK+D    
Sbjct: 57  ARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNA 116

Query: 131 RKVKN----------EEGELYAQENGLSFLETSAKSAHNVNELF 164
                             +    +  +     S    +   E F
Sbjct: 117 VSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAF 160

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 75.7 bits (185), Expect = 4e-18
 Identities = 23/157 (14%), Positives = 51/157 (32%), Gaps = 18/157 (11%)

Query: 10  QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ 69
            VK++LLG   +GK++ + +    +    Q+ T G   +          + F + D  GQ
Sbjct: 2   LVKILLLGAGESGKSTFLKQM---RIIHGQDPTKGIHEYD----FEIKNVPFKMVDVGGQ 54

Query: 70  ERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQE-----------LQRQGNPNLIM 118
                     +    + + +   +  D      +               +  +   N+ +
Sbjct: 55  RSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSI 114

Query: 119 FLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAK 155
            L  NK DL E++       + + +  G        +
Sbjct: 115 ILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQ 151

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 70.8 bits (172), Expect = 3e-16
 Identities = 34/197 (17%), Positives = 60/197 (30%), Gaps = 46/197 (23%)

Query: 10  QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ 69
           +VKL+LLG   +GK+++V +           +  G              + F ++D  GQ
Sbjct: 2   EVKLLLLGAGESGKSTIVKQMKIIHE-----AGTG----IVETHFTFKDLHFKMFDVGGQ 52

Query: 70  ERYHSLAPMYYRGAAAAVVVYDITSMDSF-----------ERAKKWVQELQRQGNPNLIM 118
                     + G  A +    ++  D             E  K +      +   +  +
Sbjct: 53  RSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSI 112

Query: 119 FLVANKVDLEEKRKVKNEEGELYAQENGLSFL--------------------------ET 152
            L  NK DL E++  K+     Y +  G +                             T
Sbjct: 113 ILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFT 172

Query: 153 SAKSAHNVNELFYEIGD 169
            A    NV  +F  + D
Sbjct: 173 CATDTKNVQFVFDAVTD 189

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 70.5 bits (171), Expect = 4e-16
 Identities = 27/171 (15%), Positives = 47/171 (27%), Gaps = 21/171 (12%)

Query: 10  QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ 69
             KLV LG    GKT+L+      +      +            L    + F  +D  G 
Sbjct: 13  TGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPT-----LHPTSEELTIAGMTFTTFDLGGH 67

Query: 70  ERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQE-LQRQGNPNLIMFLVANKVDLE 128
            +   +   Y       V + D    +    +K+ +   +  +   N+ + ++ NK+D  
Sbjct: 68  IQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRP 127

Query: 129 EKRKV---------------KNEEGELYAQENGLSFLETSAKSAHNVNELF 164
           E                   K            L     S        E F
Sbjct: 128 EAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGF 178

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} Length = 221

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 68.6 bits (167), Expect = 2e-15
 Identities = 28/167 (16%), Positives = 47/167 (28%), Gaps = 20/167 (11%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           +L+LLG   +GK+++V +            T G              + F ++D  GQ  
Sbjct: 8   RLLLLGAGESGKSTIVKQMRILHV----VLTSGIFETK----FQVDKVNFHMFDVGGQRD 59

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWV-----------QELQRQGNPNLIMFL 120
                   +    A + V   +S +   R                     +    + + L
Sbjct: 60  ERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVIL 119

Query: 121 VANKVDL-EEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYE 166
             NK DL  EK      + E Y  E         A      +     
Sbjct: 120 FLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTR 166

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 63.5 bits (153), Expect = 2e-13
 Identities = 23/127 (18%), Positives = 45/127 (35%), Gaps = 5/127 (3%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
            ++ +G   +GKT L +R + GQ+ D  +++I  +     ++ N       I     +  
Sbjct: 2   AVLFVGLCDSGKTLLFVRLLTGQYRD-TQTSITDSSAIYKVNNNRGNSLTLIDLPGHESL 60

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNL----IMFLVANKVDL 127
              L   +   A A V V D  +     +            +  L     + +  NK D+
Sbjct: 61  RFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDI 120

Query: 128 EEKRKVK 134
              +  K
Sbjct: 121 AMAKSAK 127

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} Length = 161

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

 Score = 50.1 bits (118), Expect = 8e-09
 Identities = 22/157 (14%), Positives = 47/157 (29%), Gaps = 1/157 (0%)

Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +K+V+ G    GK+SL+     G+         G         ++   +   I DTAG  
Sbjct: 2   MKVVIAGRPNAGKSSLLNALA-GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLR 60

Query: 71  RYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEK 130
                        A   +      +   +       +        +        + +   
Sbjct: 61  EASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRN 120

Query: 131 RKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
           +     E    ++ NG + +  SA++   V+ L   +
Sbjct: 121 KADITGETLGMSEVNGHALIRLSARTGEGVDVLRNHL 157

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.6 bits (117), Expect = 2e-08
 Identities = 19/179 (10%), Positives = 48/179 (26%), Gaps = 20/179 (11%)

Query: 13  LVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER- 71
           +++ G   +GKTSL+              T+ +         +   +    +    + R 
Sbjct: 6   IIIAGPQNSGKTSLLTLLTTDSV----RPTVVSQEPLSAADYDGSGVTLVDFPGHVKLRY 61

Query: 72  --YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQ----GNPNLIMFLVANKV 125
                L            +V             +++ ++           + + +  NK 
Sbjct: 62  KLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKS 121

Query: 126 DLEEKRKVKNEEGELYAQEN--------GLSFLETSAKSAHNVNELFYEIGDCTECFSL 176
           +L   R     +  L ++           L+ +E              ++   T+ F  
Sbjct: 122 ELFTARPPSKIKDALESEIQKVIERRKKSLNEVERKINEEDYAENTL-DVLQSTDGFKF 179

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} Length = 400

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.2 bits (101), Expect = 5e-06
 Identities = 19/145 (13%), Positives = 41/145 (28%), Gaps = 11/145 (7%)

Query: 8   NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTI--KFDIWD 65
           +  + + + G+ G+GK+S +         +   +  G    T      +         WD
Sbjct: 54  SSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWD 113

Query: 66  TAGQERYHSLAPMYYR--GAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVAN 123
             G    +     Y              I++    +      + +          + V  
Sbjct: 114 LPGIGSTNFPPDTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAISMMKKE---FYFVRT 170

Query: 124 KVDL----EEKRKVKNEEGELYAQE 144
           KVD     E   + +  + E   Q+
Sbjct: 171 KVDSDITNEADGEPQTFDKEKVLQD 195

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

 Score = 41.2 bits (95), Expect = 1e-05
 Identities = 28/170 (16%), Positives = 60/170 (35%), Gaps = 14/170 (8%)

Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +K+ ++G    GK++L    +  +         G         +     K+   DTAG  
Sbjct: 9   IKVAIVGRPNVGKSTLFNAIL-NKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLR 67

Query: 71  RYHSLAPMYYRG-----------AAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMF 119
           R   + P                 A  VV+    +     + ++    ++R+G  ++++F
Sbjct: 68  RKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVF 127

Query: 120 LVANKVDLEEKRKVKNEE--GELYAQENGLSFLETSAKSAHNVNELFYEI 167
              + V   EKR  +  +   E     +    + TSA    N++ +   +
Sbjct: 128 NKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAM 177

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} Length = 188

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

 Score = 40.9 bits (94), Expect = 2e-05
 Identities = 19/171 (11%), Positives = 52/171 (30%), Gaps = 10/171 (5%)

Query: 7   KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDT 66
            +  +++   G    GK+S +      +       T G      +  + +     D+   
Sbjct: 13  SDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGY 72

Query: 67  AGQERYHSL---------APMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLI 117
              E    +           +  R +   +VV         +  ++ ++         L+
Sbjct: 73  GYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLV 132

Query: 118 MFLVANKVDLEEKRKVKNE-EGELYAQENGLSFLETSAKSAHNVNELFYEI 167
           +   A+K+    ++   N     + A    +     S+     V++L  ++
Sbjct: 133 LLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKL 183

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} Length = 180

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

 Score = 40.0 bits (92), Expect = 4e-05
 Identities = 28/160 (17%), Positives = 45/160 (28%), Gaps = 9/160 (5%)

Query: 15  LLGDMGTGKTSLVLRFVK------GQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAG 68
           L+G    GK+SL+    +         F      +G    ++        I   I   + 
Sbjct: 6   LVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASE 65

Query: 69  QERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFL-VANKVDL 127
            +        +       + V D              +             L   NKVDL
Sbjct: 66  GKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDL 125

Query: 128 EEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
            E+  VK     L     GL+ L  SA +   +  L   +
Sbjct: 126 LEEEAVKALADAL--AREGLAVLPVSALTGAGLPALKEAL 163

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} Length = 205

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

 Score = 37.2 bits (85), Expect = 4e-04
 Identities = 20/113 (17%), Positives = 35/113 (30%), Gaps = 7/113 (6%)

Query: 60  KFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMF 119
           +    D  G E   +           A++V          + ++    L   G  NLI+ 
Sbjct: 87  RISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIV 146

Query: 120 LVANKVDLEEKR---KVKNEEGELYAQENG--LSFLETSAKSAHNVNELFYEI 167
              NKVD+  K        +  +         +  +  SA    N++ L   I
Sbjct: 147 --QNKVDVVSKEEALSQYRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGI 197

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

 Score = 36.6 bits (83), Expect = 6e-04
 Identities = 24/160 (15%), Positives = 46/160 (28%), Gaps = 9/160 (5%)

Query: 14  VLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYH 73
            ++G    GK++L+   +  +                   L E   +    DT G  +  
Sbjct: 9   AIVGKPNVGKSTLLNNLLGVKVAPI-SPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPM 67

Query: 74  SLAPMYYR------GAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDL 127
                +         A    VV+ +          + V    +     + + LV NK+D 
Sbjct: 68  DALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDA 127

Query: 128 EEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
            +  +   +       E        SA     V EL  ++
Sbjct: 128 AKYPEEAMKAYHELLPEA--EPRMLSALDERQVAELKADL 165

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

 Score = 36.7 bits (83), Expect = 6e-04
 Identities = 23/157 (14%), Positives = 50/157 (31%), Gaps = 4/157 (2%)

Query: 14  VLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYH 73
           +++G    GK++L  + V  +     E   G        ++      F + DT G     
Sbjct: 4   LIVGRPNVGKSTLFNKLV-KKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNP 62

Query: 74  SLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKV 133
                         ++ +   +      K+ + +        L    V   +   +   +
Sbjct: 63  QDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENL 122

Query: 134 KNEEGELYAQENGLSFLE---TSAKSAHNVNELFYEI 167
           +  E E+  +   L F E    SA+   N++ +   I
Sbjct: 123 REFEREVKPELYSLGFGEPIPVSAEHNINLDTMLETI 159

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

 Score = 36.3 bits (82), Expect = 0.001
 Identities = 23/165 (13%), Positives = 51/165 (30%), Gaps = 9/165 (5%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           ++ L G    GK+S +   +  +      S  G         +N+     D+      + 
Sbjct: 25  EIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDELHFVDVPGYGFAKV 84

Query: 72  YHSLAPMYYRGAAA---------AVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVA 122
             S    + R             AVV              +  + L+  G P +++   A
Sbjct: 85  SKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKA 144

Query: 123 NKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
           +K+   +  K      +    +     +  S+++    +E +  I
Sbjct: 145 DKIPKGKWDKHAKVVRQTLNIDPEDELILFSSETKKGKDEAWGAI 189

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

 Score = 35.8 bits (81), Expect = 0.001
 Identities = 32/149 (21%), Positives = 57/149 (38%), Gaps = 11/149 (7%)

Query: 4   TSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDI 63
           T+N +  +  VL+G  G+GK+++                + AAF           I+   
Sbjct: 1   TTNHDHHI-YVLMGVSGSGKSAVASEVAH---------QLHAAFLDGDFLHPRRNIEKMA 50

Query: 64  WDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVAN 123
                 +            AA A+   +  S+      KK  ++L R+GNPNL    +  
Sbjct: 51  SGEPLNDDDRKPWLQALNDAAFAMQRTNKVSLIVCSALKKHYRDLLREGNPNLSFIYLKG 110

Query: 124 KVDLEEKRKVKNEEGELYAQENGLSFLET 152
             D+ E R +K  +G  +  +  ++  ET
Sbjct: 111 DFDVIESR-LKARKGHFFKTQMLVTQFET 138

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 35.8 bits (81), Expect = 0.001
 Identities = 27/176 (15%), Positives = 48/176 (27%), Gaps = 24/176 (13%)

Query: 14  VLLGDMGTGKTSLVLRFVK------------------GQFFDFQESTIGAAFFTQVLSLN 55
           +  G    GK++L+ R                                G  F   +    
Sbjct: 4   IFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWKNHKIIDMPGFGFMMGLPKEV 63

Query: 56  EVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPN 115
           +  IK +I         +    +      AA  +                 +  R+ +  
Sbjct: 64  QERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIP 123

Query: 116 LIMFLVANKVDLEEKRKVK----NEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
            I+    NK+D  +  +       E+ E+   E    F+  SAK   N+  L   I
Sbjct: 124 TIV--AVNKLDKIKNVQEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRI 177

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

 Score = 35.3 bits (80), Expect = 0.001
 Identities = 30/159 (18%), Positives = 55/159 (34%), Gaps = 7/159 (4%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAG--Q 69
           ++V++G    GK++L+ R +  +         G         +    I F I DTAG   
Sbjct: 2   RMVIVGKPNVGKSTLLNRLL-NEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRS 60

Query: 70  ERYHSLAPMYYRGAAAAVVVYDIT-SMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLE 128
           E    +  +        +   DI   +               +   N    +V NKVD+ 
Sbjct: 61  ETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERIKNKRYLVVINKVDVV 120

Query: 129 EKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
           EK   +  + +L    +    ++ SA     + +L   I
Sbjct: 121 EKINEEEIKNKLGTDRH---MVKISALKGEGLEKLEESI 156

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 34.3 bits (77), Expect = 0.004
 Identities = 24/169 (14%), Positives = 59/169 (34%), Gaps = 10/169 (5%)

Query: 6   NKNIQVKLVLLGDMGTGKTSLVLRF-------VKGQFFDFQESTIGAAFFTQVLSLNEVT 58
           +K+    + ++G    GK++L+ +           +    +   +G        ++   T
Sbjct: 1   DKSYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDT 60

Query: 59  IKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIM 118
               + +     R  +             +V  +     +    + V    R+G   +I+
Sbjct: 61  PGLHMEEKRAINRLMN--KAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLREGKAPVIL 118

Query: 119 FLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
             V    +++EK  +      L +Q N L  +  SA++  NV+ +   +
Sbjct: 119 A-VNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIV 166

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	178
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	100.0
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	100.0
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	100.0
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	100.0
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	100.0
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	100.0
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	100.0
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	100.0
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	100.0
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	100.0
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	100.0
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	100.0
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	100.0
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	100.0
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	100.0
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	100.0
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	100.0
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	100.0
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.97
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.96
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.95
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.95
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.95
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.94
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.94
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	99.94
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	99.94
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.93
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.93
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	99.92
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	99.91
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.91
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	99.91
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.9
d2fh5b1	207	Signal recognition particle receptor beta-subunit	99.9
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	99.89
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	99.89
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	99.89
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	99.89
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	99.89
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	99.88
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.86
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	99.83
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.82
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	99.81
d1nrjb_	209	Signal recognition particle receptor beta-subunit	99.78
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	99.78
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	99.77
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	99.74
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	99.74
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	99.73
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	99.73
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	99.64
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	99.62
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	99.6
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	99.51
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	99.5
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	99.49
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	99.33
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	99.15
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	99.14
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	99.06
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	99.0
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.87
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.69
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.61
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.56
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.44
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	98.37
d1vmaa2	213	GTPase domain of the signal recognition particle r	98.32
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.27
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.27
d2qy9a2	211	GTPase domain of the signal recognition particle r	98.27
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	98.2
d1j8yf2	211	GTPase domain of the signal sequence recognition p	98.16
d1okkd2	207	GTPase domain of the signal recognition particle r	98.12
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	98.02
d1ls1a2	207	GTPase domain of the signal sequence recognition p	97.99
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.99
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.96
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	97.95
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	97.88
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.87
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	97.86
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.85
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.83
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.82
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	97.82
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	97.81
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	97.78
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	97.77
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.77
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.76
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.7
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	97.65
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.64
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	97.63
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.61
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	97.58
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	97.57
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	97.56
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	97.56
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	97.54
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	97.52
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	97.51
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	97.51
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	97.51
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	97.49
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	97.46
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	97.46
d2awna2	232	Maltose transport protein MalK, N-terminal domain	97.46
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	97.46
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.45
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.45
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	97.45
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	97.44
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	97.42
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	97.41
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	97.4
d1g2912	240	Maltose transport protein MalK, N-terminal domain	97.4
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	97.4
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	97.4
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	97.38
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	97.38
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	97.37
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	97.37
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	97.35
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	97.35
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	97.35
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	97.29
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	97.29
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	97.29
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	97.28
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	97.28
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	97.28
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	97.27
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	97.27
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	97.22
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	97.22
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	97.21
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	97.18
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	97.17
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	97.15
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	97.14
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	97.13
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	97.11
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	97.09
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	97.06
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	97.02
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	97.02
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	97.01
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	97.01
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	96.97
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	96.97
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	96.91
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	96.89
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	96.85
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	96.83
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	96.83
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	96.78
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	96.77
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.74
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	96.74
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	96.72
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	96.72
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	96.69
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	96.67
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	96.67
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.52
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	96.4
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	96.34
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	96.32
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	96.27
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	96.27
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	96.24
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	96.23
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	96.22
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	96.22
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	96.2
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	96.2
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	96.18
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	96.17
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	96.16
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	96.1
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	96.09
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	96.02
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	95.99
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	95.98
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	95.95
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	95.94
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	95.91
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	95.91
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	95.87
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	95.85
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	95.85
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	95.77
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	95.7
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	95.66
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	95.64
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	95.61
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	95.56
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	95.51
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	95.48
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	95.47
d1tuea_	205	Replication protein E1 helicase domain {Human papi	95.43
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	95.41
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	95.39
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	95.38
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	95.32
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	95.24
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	95.2
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	95.02
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	94.94
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	94.89
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	94.87
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	94.73
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	94.61
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	94.44
d1xpua3	289	Transcription termination factor Rho, ATPase domai	93.94
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	93.67
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	92.7
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	92.62
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	92.54
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	92.41
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	92.1
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	91.93
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	91.67
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	91.41
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	91.28
d1xbta1	133	Thymidine kinase, TK1, N-terminal domain {Human (H	91.13
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	90.71
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	90.02
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	89.77
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	89.38
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	89.38
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	89.22
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	88.96
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	88.82
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	88.67
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	88.4
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	87.93
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	87.87
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	87.58
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	87.22
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	86.82
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	86.24
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	86.07
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	84.66
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	84.56
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	83.61
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	82.95
d1eg7a_	549	Formyltetrahydrofolate synthetase {Moorella thermo	81.94
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	81.73
d2eyqa3	233	Transcription-repair coupling factor, TRCF {Escher	81.16
d1lkxa_	684	Myosin S1, motor domain {Dictyostelium discoideum,	80.01

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=3.6e-40  Score=218.40  Aligned_cols=166  Identities=36%  Similarity=0.621  Sum_probs=155.8

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEE
Q 030364            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (178)
Q Consensus         8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i   87 (178)
                      ++.+||+++|.+|||||||++++.++.+.+.+.++.+.+.....+...+..+.+.+||+||++.+..++..+++++|++|
T Consensus         3 ~~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e~~~~~~~~~~~~ad~~i   82 (169)
T d3raba_           3 DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFI   82 (169)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTTTTCCEEE
T ss_pred             CeEEEEEEECCCCcCHHHHHHHHHcCCCCcccccccccceeeEEEEeecceEEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence            45789999999999999999999999999889999999998999999999999999999999999999999999999999


Q ss_pred             EEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Q 030364           88 VVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI  167 (178)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  167 (178)
                      +|||+++++++..+..|+..+.....+..|+++++||+|+.+...+..++...+++.++++|++|||++|.|++++|++|
T Consensus        83 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~~l  162 (169)
T d3raba_          83 LMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERL  162 (169)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHCCSCCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHH
T ss_pred             EEEECccchhhhhhhhhhhhhhcccCCcceEEEEEeecccccccccchhhhHHHHHHcCCEEEEecCCCCcCHHHHHHHH
Confidence            99999999999999999988888777899999999999999888888899999999999999999999999999999999


Q ss_pred             Hhhccc
Q 030364          168 GDCTEC  173 (178)
Q Consensus       168 ~~~i~~  173 (178)
                      ++.+.+
T Consensus       163 ~~~i~e  168 (169)
T d3raba_         163 VDVICE  168 (169)
T ss_dssp             HHHHHT
T ss_pred             HHHHhh
Confidence            988743

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.8e-40  Score=219.69  Aligned_cols=171  Identities=28%  Similarity=0.482  Sum_probs=154.7

Q ss_pred             CCCCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCc
Q 030364            5 SNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAA   84 (178)
Q Consensus         5 ~~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d   84 (178)
                      +++.+.+||+++|.+|||||||+++++.+.+...+.++.. +.....+.+++..+.+.+||++|.+.+...+..+++.+|
T Consensus         1 p~~~~~~Kv~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~   79 (173)
T d2fn4a1           1 PPPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIE-DSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGH   79 (173)
T ss_dssp             CCSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCC-EEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCS
T ss_pred             CCCCCeEEEEEECCCCcCHHHHHHHHHhCCCCcccccccc-cceeeEeccCCeeeeeeccccccccccccccchhhccce
Confidence            3566789999999999999999999999999888877754 444567888999999999999999999999999999999


Q ss_pred             EEEEEEECCCHhHHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHH
Q 030364           85 AAVVVYDITSMDSFERAKKWVQELQRQ-GNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNEL  163 (178)
Q Consensus        85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~  163 (178)
                      ++++|||.+++++++.+..|+..+.+. ...+.|+++|+||+|+...+....+++..+++.++++|++|||++|.||+++
T Consensus        80 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~  159 (173)
T d2fn4a1          80 GFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEA  159 (173)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHH
T ss_pred             eeeeecccccccccchhhhhhHHHHHHhccCCCceEEEEEeechhhccccchhhhhHHHHhcCCEEEEEeCCCCcCHHHH
Confidence            999999999999999999999987664 3578999999999999888888889999999999999999999999999999


Q ss_pred             HHHHHhhcccccc
Q 030364          164 FYEIGDCTECFSL  176 (178)
Q Consensus       164 ~~~l~~~i~~~~~  176 (178)
                      |++|++.+.+.+.
T Consensus       160 f~~l~~~i~k~~~  172 (173)
T d2fn4a1         160 FEQLVRAVRKYQE  172 (173)
T ss_dssp             HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999877654

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.2e-40  Score=219.06  Aligned_cols=164  Identities=43%  Similarity=0.741  Sum_probs=148.6

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEE
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVV   88 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~   88 (178)
                      ..+||+++|.+|||||||++++..+.+.+.+.++.+..........++..+.+.+||++|+..+...+..+++++|++++
T Consensus         2 y~fKivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~   81 (167)
T d1z08a1           2 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAIL   81 (167)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEE
T ss_pred             ceEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccchheeeeccCCccceeeeeccCCcceecccchhhccCCceeEE
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Q 030364           89 VYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIG  168 (178)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  168 (178)
                      |||+++++||+.+..|++.+........|+++++||+|+...+++..+++..+++.++++|++|||++|.||+++|.+|+
T Consensus        82 v~d~~~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~e~~~~a~~~~~~~~e~Sak~~~~v~e~F~~l~  161 (167)
T d1z08a1          82 VYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLC  161 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHHH
T ss_pred             EEeCCchhHHHhhhhhhhhcccccccccceeeeccccccccccccchHHHHHHHHHcCCeEEEEecCCCcCHHHHHHHHH
Confidence            99999999999999999888776667889999999999998889999999999999999999999999999999999999


Q ss_pred             hhcc
Q 030364          169 DCTE  172 (178)
Q Consensus       169 ~~i~  172 (178)
                      +++-
T Consensus       162 ~~i~  165 (167)
T d1z08a1         162 KRMI  165 (167)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            8774

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.7e-40  Score=218.91  Aligned_cols=162  Identities=35%  Similarity=0.596  Sum_probs=152.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEE
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVV   89 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v   89 (178)
                      .+||+++|.+|+|||||+++|.++.+...+.++.+.+........++..+.+.+||++|++.+...+..+++.+|++++|
T Consensus         2 ~iKv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v   81 (164)
T d1z2aa1           2 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLV   81 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccceeeeeecCceeeeeeeccCCccchhhhhhhhhccCceEEEE
Confidence            47999999999999999999999999988999999888888899999999999999999999999999999999999999


Q ss_pred             EECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHh
Q 030364           90 YDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIGD  169 (178)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  169 (178)
                      ||++++++++.+..|+..+... .++.|+++|+||+|+.+.+.+..+++..+++.++++|++|||++|.|++++|++|++
T Consensus        82 ~d~~~~~s~~~~~~~~~~i~~~-~~~~~iilVgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l~~  160 (164)
T d1z2aa1          82 FSTTDRESFEAISSWREKVVAE-VGDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAE  160 (164)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHH-HCSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHH
T ss_pred             Eeccchhhhhhccccccccccc-CCCceEEEeeccCCcccceeeeehhhHHHHHHcCCEEEEeccCCCcCHHHHHHHHHH
Confidence            9999999999999999998776 357999999999999888889989999999999999999999999999999999998


Q ss_pred             hcc
Q 030364          170 CTE  172 (178)
Q Consensus       170 ~i~  172 (178)
                      ++-
T Consensus       161 ~~l  163 (164)
T d1z2aa1         161 KHL  163 (164)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            764

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.5e-39  Score=215.01  Aligned_cols=164  Identities=46%  Similarity=0.764  Sum_probs=156.3

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEE
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVV   88 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~   88 (178)
                      +.+||+++|.+|||||||+++|..+++.+.+.++.+..........++....+.+||++|++.+...+..+++.++++++
T Consensus         3 k~~Ki~lvG~~~vGKTsli~rl~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~   82 (167)
T d1z0ja1           3 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAII   82 (167)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccccccccccccceeeeecCCchhhhHHHHHHHhhccceEE
Confidence            57899999999999999999999999999999999999989999999999999999999999999999999999999999


Q ss_pred             EEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Q 030364           89 VYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIG  168 (178)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  168 (178)
                      |||++++++++.+..|+..+.....++.|+++|+||+|+.+.+.+..+++..+++..+++|++|||++|.||+++|.+|+
T Consensus        83 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~nV~e~f~~l~  162 (167)
T d1z0ja1          83 VYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEIS  162 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHH
T ss_pred             EeeechhhhhhhHHHhhhhhhhccCCcceEEEecccchhccccchhHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHH
Confidence            99999999999999999998888788999999999999998888999999999999999999999999999999999999


Q ss_pred             hhcc
Q 030364          169 DCTE  172 (178)
Q Consensus       169 ~~i~  172 (178)
                      ++|.
T Consensus       163 ~~i~  166 (167)
T d1z0ja1         163 RRIP  166 (167)
T ss_dssp             HHCC
T ss_pred             HhCC
Confidence            9874

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.7e-40  Score=218.20  Aligned_cols=165  Identities=39%  Similarity=0.700  Sum_probs=155.1

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEE
Q 030364            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (178)
Q Consensus         8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i   87 (178)
                      +..+||+++|.+|||||||+++|..+.+.+.+.++.+.++....+.+++..+.+.+||+||++.+...++.+++++++++
T Consensus         3 ~~~~Ki~lvG~~~vGKTsLi~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~~~~i   82 (171)
T d2ew1a1           3 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALI   82 (171)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEE
T ss_pred             CEEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhccceEE
Confidence            45789999999999999999999999999889999999999999999999999999999999999999999999999999


Q ss_pred             EEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Q 030364           88 VVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI  167 (178)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  167 (178)
                      +|+|.+++.+++.+..|+..+........|+++|+||+|+....++..+++..+++.+++++++|||++|.||+++|.+|
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ilvgnK~D~~~~~~v~~~~~~~~~~~~~~~~~~~SAktg~gV~e~f~~l  162 (171)
T d2ew1a1          83 LTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDL  162 (171)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHH
T ss_pred             EeeecccchhhhhhhhhhhhhcccccccccEEEEEeecccccccchhhhHHHHHHHhCCCEEEEEccCCCCCHHHHHHHH
Confidence            99999999999999999999888777889999999999998888888899999999999999999999999999999999


Q ss_pred             Hhhcc
Q 030364          168 GDCTE  172 (178)
Q Consensus       168 ~~~i~  172 (178)
                      ++++-
T Consensus       163 ~~~l~  167 (171)
T d2ew1a1         163 ACRLI  167 (171)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            87753

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-39  Score=214.72  Aligned_cols=162  Identities=45%  Similarity=0.766  Sum_probs=153.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEEE
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY   90 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~   90 (178)
                      +||+++|.+|||||||++++.++++...+.++.+..........++..+.+.+||++|++.+...+..++..+|++++||
T Consensus         1 fKv~vvG~~~vGKTsLi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ilv~   80 (164)
T d1yzqa1           1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVY   80 (164)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEE
T ss_pred             CEEEEECCCCcCHHHHHHHHHhCCCCCccccceeeeccceeeccCCCceeeeecccCCcchhccchHHHhhccceEEEee
Confidence            58999999999999999999999999989999998888888889999999999999999999999999999999999999


Q ss_pred             ECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHhh
Q 030364           91 DITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIGDC  170 (178)
Q Consensus        91 d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  170 (178)
                      |.+++.+++++..|+..+.....++.|+++|+||+|+.+...+..+++..+++.++++|++|||++|.||+++|.+|++.
T Consensus        81 d~~~~~s~~~i~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~v~e~f~~i~~~  160 (164)
T d1yzqa1          81 DITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAA  160 (164)
T ss_dssp             ETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             ccccccchhhhHhhHHHHHHhcCCCceEEEEecccchhhhhhhhHHHHHHHHHHcCCEEEEecCCCCcCHHHHHHHHHHh
Confidence            99999999999999999888777899999999999998888888889999999999999999999999999999999998


Q ss_pred             cc
Q 030364          171 TE  172 (178)
Q Consensus       171 i~  172 (178)
                      +-
T Consensus       161 l~  162 (164)
T d1yzqa1         161 LP  162 (164)
T ss_dssp             SC
T ss_pred             hC
Confidence            75

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-39  Score=214.32  Aligned_cols=163  Identities=41%  Similarity=0.735  Sum_probs=154.3

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEE
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVV   88 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~   88 (178)
                      ..+||+|+|.+|+|||||++++.++.+...+.++.+.+........++..+.+.+||++|++.+...+..+++.+|++++
T Consensus         3 y~~KivlvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~d~~il   82 (166)
T d1z0fa1           3 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALM   82 (166)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEE
T ss_pred             EEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccccceeEEEEECCEEEEEEEeccCCchhHHHHHHHHhcCCcEEEE
Confidence            46899999999999999999999999999889999999999999999999999999999999999999999999999999


Q ss_pred             EEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Q 030364           89 VYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIG  168 (178)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  168 (178)
                      |||++++++++.+..|+..+.....+..|+++++||+|+.....+..+++..+++.+++++++|||++|.||+++|.+|+
T Consensus        83 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Saktg~~v~e~f~~i~  162 (166)
T d1z0fa1          83 VYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAA  162 (166)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred             EeccCchHHHHHHHHHHHHHHhhccccceEEEEcccccchhhcccHHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            99999999999999999999888788999999999999988888888899999999999999999999999999999998


Q ss_pred             hhc
Q 030364          169 DCT  171 (178)
Q Consensus       169 ~~i  171 (178)
                      +.+
T Consensus       163 ~~i  165 (166)
T d1z0fa1         163 KKI  165 (166)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            865

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-39  Score=215.60  Aligned_cols=164  Identities=33%  Similarity=0.475  Sum_probs=151.0

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEE
Q 030364            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (178)
Q Consensus         8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i   87 (178)
                      .+.+||+|+|.+|||||||+++|+++.+.+.+.|+.+..+ ...+.+++..+.+.+||++|.+.+..+...++..+|+++
T Consensus         2 ~k~~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~d~~i   80 (167)
T d1xtqa1           2 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYI   80 (167)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTSSCCEEE
T ss_pred             CcceEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeccc-ceEEecCcEEEEeeecccccccccccccchhhhhhhhhh
Confidence            4578999999999999999999999999888888888775 466788999999999999999999999999999999999


Q ss_pred             EEEECCCHhHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Q 030364           88 VVYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYE  166 (178)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  166 (178)
                      +|||++++++++.+..|+..+.... .++.|+++|+||+|+...+++..+++..+++.++++|++|||++|.|++++|+.
T Consensus        81 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  160 (167)
T d1xtqa1          81 LVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRR  160 (167)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHCSSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHHH
T ss_pred             hhcccchhhhhhhhhhhhhhhhhcccccccceeeeccccccccccchhHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHH
Confidence            9999999999999999998887653 578999999999999888889999999999999999999999999999999999


Q ss_pred             HHhhcc
Q 030364          167 IGDCTE  172 (178)
Q Consensus       167 l~~~i~  172 (178)
                      |++.+.
T Consensus       161 li~~~~  166 (167)
T d1xtqa1         161 IILEAE  166 (167)
T ss_dssp             HHHHHH
T ss_pred             HHHHhc
Confidence            998775

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.4e-39  Score=213.29  Aligned_cols=165  Identities=63%  Similarity=0.986  Sum_probs=156.9

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEE
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVV   88 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~   88 (178)
                      ..+||+++|.+|||||||+++|..+++.+.+.++.+...........+..+.+.+||++|++.+...+..+++.+|++++
T Consensus         5 ~~~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   84 (170)
T d1r2qa_           5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIV   84 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             eEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccceeeccceEEEEEeccCCCchhhhhhHHHHhhCcceEEE
Confidence            47899999999999999999999999999999999999988999999999999999999999999999999999999999


Q ss_pred             EEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Q 030364           89 VYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIG  168 (178)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  168 (178)
                      |||.+++++++.+..|+..+.+...++.|+++|+||+|+...+.+..+....+++.++++|++|||++|.||+++|.+|+
T Consensus        85 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~e~~~~~~~~~~~~~~e~SAk~g~~V~e~f~~l~  164 (170)
T d1r2qa_          85 VYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIA  164 (170)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred             EeccchhhHHHHHHHHhhhhhhccCCCceEEeecccccccccccccHHHHHHHHHhcCCEEEEeeCCCCCCHHHHHHHHH
Confidence            99999999999999999999887788999999999999998889999999999999999999999999999999999999


Q ss_pred             hhccc
Q 030364          169 DCTEC  173 (178)
Q Consensus       169 ~~i~~  173 (178)
                      ++|.+
T Consensus       165 ~~i~~  169 (170)
T d1r2qa_         165 KKLPK  169 (170)
T ss_dssp             HTSCC
T ss_pred             HHHhh
Confidence            98764

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=100.00  E-value=2e-39  Score=214.49  Aligned_cols=164  Identities=32%  Similarity=0.550  Sum_probs=147.7

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEE
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVV   88 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~   88 (178)
                      +-+||+|+|.+|||||||+++++.+++...+.+|.+..+ ...+..++..+.+.+||++|.+.+...+..+++.+|++++
T Consensus         3 ~~~KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~~~-~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~il   81 (168)
T d1u8za_           3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC   81 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCcccCCcccccc-ccccccccccccccccccccccchhhhhhhcccccceeEE
Confidence            568999999999999999999999999988999888765 4556789999999999999999999999999999999999


Q ss_pred             EEECCCHhHHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Q 030364           89 VYDITSMDSFERAKKWVQELQRQ-GNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI  167 (178)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  167 (178)
                      |||.+++++++.+..|+..+.+. ..++.|+++|+||+|+.+.+++..+++..+++.++++|++|||++|.|++++|++|
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiivgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~~l  161 (168)
T d1u8za_          82 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDL  161 (168)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHH
T ss_pred             EeeccchhhhhhHHHHHHHHHHhhCCCCCcEEEEeccccccccccccHHHHHHHHHHcCCeEEEEcCCCCcCHHHHHHHH
Confidence            99999999999999999988764 35789999999999998888899999999999999999999999999999999999


Q ss_pred             Hhhccc
Q 030364          168 GDCTEC  173 (178)
Q Consensus       168 ~~~i~~  173 (178)
                      ++.+.+
T Consensus       162 ~~~i~~  167 (168)
T d1u8za_         162 MREIRA  167 (168)
T ss_dssp             HHHHHT
T ss_pred             HHHHHC
Confidence            998754

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=6.7e-39  Score=212.18  Aligned_cols=164  Identities=32%  Similarity=0.497  Sum_probs=149.7

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEE
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVV   88 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~   88 (178)
                      |.+||+++|.+|+|||||++++.++.+.+.+.++.+..+ ......++..+.+.+||++|.+.+...+..+++.+|++++
T Consensus         3 pt~Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ll   81 (169)
T d1x1ra1           3 PTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLI   81 (169)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEE
T ss_pred             CcEEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeecc-ccccccccccccccccccccccccccchhhhhhhccEEEE
Confidence            579999999999999999999999999888888877554 4556789999999999999999999999999999999999


Q ss_pred             EEECCCHhHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCC-CHHHHHHH
Q 030364           89 VYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAH-NVNELFYE  166 (178)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-~i~~~~~~  166 (178)
                      |||+++++||+++..|+..+.+.. ..+.|+++++||+|+...+++..+++..+++.++++|++|||+++. ||+++|..
T Consensus        82 v~d~~d~~Sf~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~v~~e~~~~~~~~~~~~~~e~Sak~~~~nV~~~F~~  161 (169)
T d1x1ra1          82 VYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHD  161 (169)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHHHHH
T ss_pred             ecccccchhhhccchhhHHHHhhccccCccEEEEecccchhhhceeehhhHHHHHHHcCCEEEEEcCCCCCcCHHHHHHH
Confidence            999999999999999999987653 4689999999999999988899999999999999999999999886 99999999


Q ss_pred             HHhhccc
Q 030364          167 IGDCTEC  173 (178)
Q Consensus       167 l~~~i~~  173 (178)
                      |++.+.+
T Consensus       162 l~~~i~~  168 (169)
T d1x1ra1         162 LVRVIRQ  168 (169)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9988753

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.9e-39  Score=212.67  Aligned_cols=162  Identities=28%  Similarity=0.329  Sum_probs=132.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEEE
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY   90 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~   90 (178)
                      +||+++|.+|||||||++++.+..+.. ..++.. ......+..++..+.+.+||++|++.+...+..+++.+|++++||
T Consensus         2 fKi~lvG~~~vGKTsLi~~~~~~~~~~-~~~~~~-~~~~~~i~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~~d~~ilv~   79 (168)
T d2gjsa1           2 YKVLLLGAPGVGKSALARIFGGVEDGP-EAEAAG-HTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVY   79 (168)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTC----------C-EEEEEEEEETTEEEEEEEEECC-------CHHHHHTSCSEEEEEE
T ss_pred             eEEEEECCCCcCHHHHHHHHhCCccCC-cCCeee-eeecceeeccccccceeeeecccccccceecccchhhhhhhceec
Confidence            799999999999999999999876544 333433 334556788999999999999999999999999999999999999


Q ss_pred             ECCCHhHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHh
Q 030364           91 DITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIGD  169 (178)
Q Consensus        91 d~~~~~s~~~~~~~~~~~~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  169 (178)
                      |++++++++.+..|+..+.... ..+.|+++|+||+|+...+++...++..+++.++++|++|||++|.|++++|.+|++
T Consensus        80 d~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~v~~~f~~l~~  159 (168)
T d2gjsa1          80 SVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVR  159 (168)
T ss_dssp             ETTCHHHHHHHHHHHHHHHHHCC--CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHHHHHHH
T ss_pred             cccccccccccccccchhhcccccccceEEEeecccchhhhcchhHHHHHHHHHhcCCEEEEEeCCCCcCHHHHHHHHHH
Confidence            9999999999999999987754 467899999999999988888999999999999999999999999999999999999


Q ss_pred             hcccc
Q 030364          170 CTECF  174 (178)
Q Consensus       170 ~i~~~  174 (178)
                      .+...
T Consensus       160 ~i~~~  164 (168)
T d2gjsa1         160 QIRLR  164 (168)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            87643

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-38  Score=211.91  Aligned_cols=166  Identities=42%  Similarity=0.697  Sum_probs=152.2

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEE
Q 030364            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (178)
Q Consensus         8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i   87 (178)
                      +..+||+++|.+|||||||++++.++.+...+.++.+.+.....+..++..+.+.+||++|++.+...+..+++.+|+++
T Consensus         2 ~~~~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~e~~~~~~~~~~~~~~~~i   81 (175)
T d2f9la1           2 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL   81 (175)
T ss_dssp             SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred             CEEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceeeeEEEEECCEEEEEEecccCCcHHHHHHHHHHhhccCeEE
Confidence            35689999999999999999999999999888899988888888999999999999999999999999999999999999


Q ss_pred             EEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Q 030364           88 VVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI  167 (178)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  167 (178)
                      +|||.++++|+..+..|+..+..+..++.|+++|+||+|+.+.+....+....+...++.++++|||++|.|++++|++|
T Consensus        82 ~v~d~~~~~S~~~~~~~~~~i~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~i~e~f~~l  161 (175)
T d2f9la1          82 LVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNI  161 (175)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred             EEEECCCcccchhHHHHHHHHHHhcCCCCcEEEEEeeecccccccchHHHHHHhhcccCceEEEEecCCCcCHHHHHHHH
Confidence            99999999999999999999998888889999999999998877777788888888999999999999999999999999


Q ss_pred             Hhhccc
Q 030364          168 GDCTEC  173 (178)
Q Consensus       168 ~~~i~~  173 (178)
                      ++.+.+
T Consensus       162 ~~~i~~  167 (175)
T d2f9la1         162 LTEIYR  167 (175)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            988643

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-38  Score=212.06  Aligned_cols=165  Identities=38%  Similarity=0.665  Sum_probs=155.0

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEE
Q 030364            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (178)
Q Consensus         8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i   87 (178)
                      +..+||+++|.+|||||||++++..+.+.+.+.++.+.+.....+..++..+.+.+||+||++.+...+..+++.+|+++
T Consensus         3 ~~~~KI~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (174)
T d2bmea1           3 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGAL   82 (174)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEE
T ss_pred             cEEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEEEEecCcceeEEEEECCCchhhhhhHHHHhhhCCEEE
Confidence            35689999999999999999999999999989999999988888889999999999999999999999999999999999


Q ss_pred             EEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Q 030364           88 VVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI  167 (178)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  167 (178)
                      +|||.++++++..+..|+..+.....++.|+++|+||+|+....+........+++.++++|++|||++|.|++++|.+|
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~gi~e~f~~l  162 (174)
T d2bmea1          83 LVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQC  162 (174)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred             EEEecccchhHHHHhhhhcccccccCCceEEEEEEecccccchhchhhhHHHHHHHhCCCEEEEeeCCCCcCHHHHHHHH
Confidence            99999999999999999999988877899999999999998888888888899999999999999999999999999999


Q ss_pred             Hhhcc
Q 030364          168 GDCTE  172 (178)
Q Consensus       168 ~~~i~  172 (178)
                      ++.+.
T Consensus       163 ~~~i~  167 (174)
T d2bmea1         163 ARKIL  167 (174)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88764

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-38  Score=210.77  Aligned_cols=165  Identities=41%  Similarity=0.751  Sum_probs=150.4

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEE
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVV   88 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~   88 (178)
                      ..+||+|+|++|||||||++++.++++.+.+.++.............+..+.+.+||++|++.+...+..++..+|++|+
T Consensus         2 y~~KivvvG~~~vGKTsli~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~il   81 (173)
T d2a5ja1           2 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALL   81 (173)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEE
T ss_pred             eeEEEEEECCCCcCHHHHHHHHhcCCCCCCcccceeeccceeeeeeeeeEEEEEeecccCccchhhHHHHHhhccCEEEE
Confidence            45899999999999999999999999988888888888888888889999999999999999999999999999999999


Q ss_pred             EEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Q 030364           89 VYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIG  168 (178)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  168 (178)
                      |||++++++++.+..|+..+.....++.|+++|+||+|+...+.+..++...+++.++++|++|||++|.||+++|.+|+
T Consensus        82 v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~a~~~~~~~~e~Sa~tg~~V~e~f~~i~  161 (173)
T d2a5ja1          82 VYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTA  161 (173)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHH
T ss_pred             EEeecChHHHHhHHHHHHHHHHhCCCCCeEEEEecCCchhhhhhhHHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHH
Confidence            99999999999999999999887778999999999999988888888999999999999999999999999999999999


Q ss_pred             hhccc
Q 030364          169 DCTEC  173 (178)
Q Consensus       169 ~~i~~  173 (178)
                      +.+.+
T Consensus       162 ~~i~~  166 (173)
T d2a5ja1         162 KEIYR  166 (173)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            87653

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.8e-39  Score=213.30  Aligned_cols=165  Identities=33%  Similarity=0.465  Sum_probs=148.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEE
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVV   89 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v   89 (178)
                      .+||+++|.+|||||||+++++++.+.+.+.+|.+..+ ......++..+.+.+||++|.+.+...+..+++.+|++++|
T Consensus         2 ~~Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~~~-~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv   80 (171)
T d2erxa1           2 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV   80 (171)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEE-EEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCCccCcceeecc-ccceeeccccceeccccccccccccccccccccceeEEEEE
Confidence            68999999999999999999999999888888887554 44567888999999999999999999999999999999999


Q ss_pred             EECCCHhHHHHHHHHHHHHHHhC--CCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Q 030364           90 YDITSMDSFERAKKWVQELQRQG--NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI  167 (178)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~~~~~--~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  167 (178)
                      ||++++++++.+..|+..+....  ..+.|+++|+||+|+...+++..+++..+++.++++|++|||++|.||+++|..|
T Consensus        81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~v~~~e~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l  160 (171)
T d2erxa1          81 YSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQEL  160 (171)
T ss_dssp             EETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHH
T ss_pred             eecccccchhcccchhhhhhhhhccCCCCcEEEEeecccccccccccHHHHHHHHHHcCCeEEEEcCCCCcCHHHHHHHH
Confidence            99999999999999998876532  4688999999999998888899999999999999999999999999999999999


Q ss_pred             Hhhccccc
Q 030364          168 GDCTECFS  175 (178)
Q Consensus       168 ~~~i~~~~  175 (178)
                      ++.+.+..
T Consensus       161 ~~~~~~~~  168 (171)
T d2erxa1         161 LNLEKRRT  168 (171)
T ss_dssp             HHTCCSSC
T ss_pred             HHHHHHhh
Confidence            99887543

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.4e-39  Score=214.89  Aligned_cols=170  Identities=24%  Similarity=0.386  Sum_probs=146.7

Q ss_pred             CcccCCCCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhh
Q 030364            1 MARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYY   80 (178)
Q Consensus         1 m~~~~~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~   80 (178)
                      |+.. +....+||+++|.+|||||||+++|+.+.+.+.+.+|.+.. ........+..+.+.+||++|++.+...+..++
T Consensus         1 m~~~-~~~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~Ti~~~-~~~~~~~~~~~~~l~i~D~~g~e~~~~~~~~~~   78 (185)
T d2atxa1           1 MAHG-PGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDH-YAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSY   78 (185)
T ss_dssp             CSSC-CEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCC-EEEEEESSSCEEEEEEECCCCSSSSTTTGGGGC
T ss_pred             CCCC-CCCcEEEEEEECCCCCCHHHHHHHHhhCCCCCcCCCceeee-eeEEEeeCCceEEeecccccccchhhhhhhhcc
Confidence            4444 34568999999999999999999999999988888888644 455667788899999999999999999999999


Q ss_pred             cCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcc------------ccccCHHHHHHHHHHcC-C
Q 030364           81 RGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEE------------KRKVKNEEGELYAQENG-L  147 (178)
Q Consensus        81 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~-~  147 (178)
                      +.+|++++|||+++++||+++..|+....+...++.|+++|+||+|+.+            .+.+..+++..+++.++ +
T Consensus        79 ~~a~~~ilv~d~t~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~r~v~~~~~~~~a~~~~~~  158 (185)
T d2atxa1          79 PMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGAC  158 (185)
T ss_dssp             TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCS
T ss_pred             cccceeeeccccchHHHHHHHHHHHHHHHHhcCCCCCeeEeeeccccccchhhhhhhhhcccccccHHHHHHHHHHcCCC
Confidence            9999999999999999999876666555554467899999999999864            35677888999999887 7


Q ss_pred             eEEEEeCCCCCCHHHHHHHHHhhcc
Q 030364          148 SFLETSAKSAHNVNELFYEIGDCTE  172 (178)
Q Consensus       148 ~~~~~Sa~~~~~i~~~~~~l~~~i~  172 (178)
                      +|++|||++|.||+++|+.+++.+.
T Consensus       159 ~~~E~SAk~~~gv~e~F~~li~~il  183 (185)
T d2atxa1         159 CYVECSALTQKGLKTVFDEAIIAIL  183 (185)
T ss_dssp             CEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             EEEEecCCCCcCHHHHHHHHHHHHc
Confidence            9999999999999999999998874

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.8e-38  Score=212.86  Aligned_cols=167  Identities=38%  Similarity=0.676  Sum_probs=157.3

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEE
Q 030364            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA   86 (178)
Q Consensus         7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~   86 (178)
                      .+..+||+|+|.+|||||||++++..+.+...+.++.+.++....+.+++..+.+.+||+||++.+..++..++++++++
T Consensus         3 ~~~~~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~~   82 (194)
T d2bcgy1           3 YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGI   82 (194)
T ss_dssp             CSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEE
T ss_pred             CCEEEEEEEECCCCcCHHHHHHHHhhCCCCCCcCCccceeEEEEEEEEeeEEEEEEEEECCCchhhHHHHHHHhccCCEE
Confidence            45679999999999999999999999999998999999999888999999999999999999999999999999999999


Q ss_pred             EEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Q 030364           87 VVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYE  166 (178)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  166 (178)
                      |+|||+++++++..+..|+..+......+.|+++|+||+|+.+...+..++...+++..+++|+++||++|.|++++|++
T Consensus        83 i~v~d~t~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~gi~e~f~~  162 (194)
T d2bcgy1          83 IIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLT  162 (194)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHHH
T ss_pred             EEEEeCcchhhhhhHhhhhhhhhhcccCCceEEEEEeccccccccchhHHHHhhhhhccCcceEEEecCcCccHHHHHHH
Confidence            99999999999999999999988877889999999999999998889999999999999999999999999999999999


Q ss_pred             HHhhccc
Q 030364          167 IGDCTEC  173 (178)
Q Consensus       167 l~~~i~~  173 (178)
                      |++.+..
T Consensus       163 l~~~i~~  169 (194)
T d2bcgy1         163 MARQIKE  169 (194)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9987654

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.9e-39  Score=214.14  Aligned_cols=166  Identities=37%  Similarity=0.703  Sum_probs=126.8

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEE
Q 030364            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (178)
Q Consensus         8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i   87 (178)
                      +..+||+++|.+|||||||+++|.++.+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++.+|++|
T Consensus         4 ~~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~~~~~i   83 (173)
T d2fu5c1           4 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIM   83 (173)
T ss_dssp             SEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEE
T ss_pred             cEEEEEEEECCCCcCHHHHHHHHHhCCCCCccCccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHhccCCCEEE
Confidence            45689999999999999999999999988888899999999999999999999999999999999999999999999999


Q ss_pred             EEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Q 030364           88 VVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI  167 (178)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  167 (178)
                      +|||++++.+++.+..|+..+......+.|+++|+||+|.........+++..++...+++|++|||++|.|++++|.+|
T Consensus        84 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~f~~l  163 (173)
T d2fu5c1          84 LVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTL  163 (173)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHHHH
T ss_pred             EEEECCChhhHHHHHHHHHHhhhhccCCceEEEEEecccchhhcccHHHHHHHHHHhcCCEEEEEeCCCCCCHHHHHHHH
Confidence            99999999999999999999988878899999999999998888888888889999999999999999999999999999


Q ss_pred             Hhhccc
Q 030364          168 GDCTEC  173 (178)
Q Consensus       168 ~~~i~~  173 (178)
                      ++.+.+
T Consensus       164 ~~~i~~  169 (173)
T d2fu5c1         164 ARDIKA  169 (173)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998864

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.6e-38  Score=208.88  Aligned_cols=164  Identities=55%  Similarity=0.904  Sum_probs=153.1

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEE
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVV   88 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~   88 (178)
                      +.+||+++|.+|+|||||++++.++.+.+.+.++.+.++....+..++..+.+.+||++|.+.+...+..++..+|++++
T Consensus         2 ~~iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~il   81 (170)
T d1ek0a_           2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAALV   81 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             cEEEEEEECCCCcCHHHHHHHHHhCCCCccccccccceeeccccccccccccccccccCCchhHHHHHHHHHhccceEEE
Confidence            46899999999999999999999999999999999999888899999999999999999999999999999999999999


Q ss_pred             EEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcc---ccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Q 030364           89 VYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEE---KRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFY  165 (178)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  165 (178)
                      |||.+++++++++..|+..+........|+++++||+|+.+   .+.+..+++..+++.++++|++|||++|.||+++|.
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~v~nk~d~~~~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gV~e~F~  161 (170)
T d1ek0a_          82 VYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFL  161 (170)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHH
T ss_pred             EEeCCcccchhhhhhhhhhhccccccccceeeeecccccccccchhhhhHHHHHHHHHHcCCEEEEecCCCCcCHHHHHH
Confidence            99999999999999999888887778899999999999854   467888899999999999999999999999999999


Q ss_pred             HHHhhcc
Q 030364          166 EIGDCTE  172 (178)
Q Consensus       166 ~l~~~i~  172 (178)
                      +|+++|.
T Consensus       162 ~i~~~i~  168 (170)
T d1ek0a_         162 GIGEKIP  168 (170)
T ss_dssp             HHHTTSC
T ss_pred             HHHHHhc
Confidence            9998874

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-38  Score=210.83  Aligned_cols=164  Identities=30%  Similarity=0.536  Sum_probs=145.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEE
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVV   89 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v   89 (178)
                      ++||+++|.+|||||||++++..+.+.+.+.++.+. .....+..++..+.+.+||++|...+......+++.+|++++|
T Consensus         5 ~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~-~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv   83 (171)
T d2erya1           5 KYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIED-SYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLLV   83 (171)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCCE-EEEEEEEETTEEEEEEEEECC----CCHHHHHHHHHCSEEEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCcccCccccc-ceeeeeeecccccccccccccccccccccccccccccceEEEe
Confidence            589999999999999999999999998888888774 4466678899999999999999999999999999999999999


Q ss_pred             EECCCHhHHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Q 030364           90 YDITSMDSFERAKKWVQELQRQ-GNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIG  168 (178)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  168 (178)
                      ||.++++|++.+..|+..+... .....|++||+||+|+...+.+..+++..+++.++++|++|||++|.||+++|..|+
T Consensus        84 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~i~e~f~~l~  163 (171)
T d2erya1          84 FSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELV  163 (171)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHTSSCCSEEEEEECTTCTTSCSSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHH
T ss_pred             eccccccchhhHHHHhHHHHhhcccCCCCEEEEEeccchhhhccchHHHHHHHHHHcCCEEEEEcCCCCcCHHHHHHHHH
Confidence            9999999999999999877654 356789999999999988888999999999999999999999999999999999999


Q ss_pred             hhcccc
Q 030364          169 DCTECF  174 (178)
Q Consensus       169 ~~i~~~  174 (178)
                      +.+.+.
T Consensus       164 ~~i~k~  169 (171)
T d2erya1         164 RVIRKF  169 (171)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            988654

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.6e-39  Score=211.10  Aligned_cols=164  Identities=35%  Similarity=0.563  Sum_probs=149.7

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEE
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVV   88 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~   88 (178)
                      +++||+++|.+|||||||+++++++.+.+.+.++.+. ........++..+.+.+||++|++.+......+++++|++++
T Consensus         2 k~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~-~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~il   80 (167)
T d1kaoa_           2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIED-FYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIL   80 (167)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCE-EEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCCccCCceee-eeeeeeecCcceEeeccccCCCccccccchHHHhhcccceee
Confidence            4789999999999999999999999998888888774 445667788999999999999999999999999999999999


Q ss_pred             EEECCCHhHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Q 030364           89 VYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI  167 (178)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  167 (178)
                      |||+++++++.++..|+..+.... .++.|++||+||+|+...+.+..+++..+++.++++|++|||++|.|++++|.+|
T Consensus        81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~~i~e~f~~i  160 (167)
T d1kaoa_          81 VYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEI  160 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHH
T ss_pred             eeeecchhhhhhhhchhhhhhhhccCCCCCEEEEEEccchhhcccchHHHHHHHHHHcCCeEEEECCCCCcCHHHHHHHH
Confidence            999999999999999998887643 4789999999999998888888899999999999999999999999999999999


Q ss_pred             Hhhccc
Q 030364          168 GDCTEC  173 (178)
Q Consensus       168 ~~~i~~  173 (178)
                      ++++.+
T Consensus       161 ~~~i~~  166 (167)
T d1kaoa_         161 VRQMNY  166 (167)
T ss_dssp             HHHHHH
T ss_pred             HHHHcc
Confidence            998753

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3e-38  Score=208.73  Aligned_cols=164  Identities=33%  Similarity=0.561  Sum_probs=148.1

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEE
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVV   88 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~   88 (178)
                      +.+||+++|.+|||||||++++..+.+.+.+.++.+... ...+..++..+.+.+||++|+..+...+..+++.+|++++
T Consensus         2 r~~KivvvG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   80 (167)
T d1c1ya_           2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFAL   80 (167)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEE
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCccCCcccccc-ceeEEeeeeEEEeccccccCcccccccccccccccceeEE
Confidence            478999999999999999999999999988888887665 4555778889999999999999999999999999999999


Q ss_pred             EEECCCHhHHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCccccccCHHHHHHHHHH-cCCeEEEEeCCCCCCHHHHHHH
Q 030364           89 VYDITSMDSFERAKKWVQELQRQ-GNPNLIMFLVANKVDLEEKRKVKNEEGELYAQE-NGLSFLETSAKSAHNVNELFYE  166 (178)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~~~~~~  166 (178)
                      |||++++++|+++..|+..+.+. ..++.|+++|+||+|+.....+..++...+++. .+++|++|||++|.|++++|.+
T Consensus        81 v~d~~~~~sf~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~F~~  160 (167)
T d1c1ya_          81 VYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYD  160 (167)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHH
T ss_pred             eeeccchhhhHhHHHHHHHHHHhcCCCCCeEEEEEEecCcccccccchhHHHHHHHHhCCCEEEEEcCCCCcCHHHHHHH
Confidence            99999999999999999888764 457899999999999998888888888888887 4689999999999999999999


Q ss_pred             HHhhccc
Q 030364          167 IGDCTEC  173 (178)
Q Consensus       167 l~~~i~~  173 (178)
                      |+++|.+
T Consensus       161 l~~~i~k  167 (167)
T d1c1ya_         161 LVRQINR  167 (167)
T ss_dssp             HHHHHTC
T ss_pred             HHHHhcC
Confidence            9998753

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.6e-38  Score=208.88  Aligned_cols=162  Identities=31%  Similarity=0.454  Sum_probs=142.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEE
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVV   89 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v   89 (178)
                      +.||+|+|.+|+|||||++++..+.+.+.+.++.+. ........++..+.+.+||++|++.+...+..+++++|++|+|
T Consensus         2 r~KivvvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~-~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv   80 (177)
T d1kmqa_           2 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFE-NYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMC   80 (177)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEE-EEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceee-eccccccccccceeeeccccCccchhcccchhhcccchhhhhh
Confidence            579999999999999999999999999888888764 4456667888899999999999999999999999999999999


Q ss_pred             EECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccc------------cccCHHHHHHHHHHcC-CeEEEEeCCC
Q 030364           90 YDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEK------------RKVKNEEGELYAQENG-LSFLETSAKS  156 (178)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~  156 (178)
                      ||+++++||+++..|+........++.|++||+||+|+.+.            +.+..+++..+++.++ .+|++|||++
T Consensus        81 ~d~~~~~Sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SAkt  160 (177)
T d1kmqa_          81 FSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKT  160 (177)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECGGGTTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTT
T ss_pred             cccchhHHHHHHHHHHHHHHHHhCCCCceEEeeecccccchhhHHHHHHHhhcccccHHHHHHHHHHcCCcEEEEecCCC
Confidence            99999999999887766655555678999999999998642            3577788899999888 5899999999


Q ss_pred             CCCHHHHHHHHHhhcc
Q 030364          157 AHNVNELFYEIGDCTE  172 (178)
Q Consensus       157 ~~~i~~~~~~l~~~i~  172 (178)
                      |.||+++|+.+++.+.
T Consensus       161 ~~gi~e~F~~i~~~~l  176 (177)
T d1kmqa_         161 KDGVREVFEMATRAAL  176 (177)
T ss_dssp             CTTHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHh
Confidence            9999999999998763

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.8e-38  Score=209.00  Aligned_cols=164  Identities=33%  Similarity=0.470  Sum_probs=144.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEE
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVV   89 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v   89 (178)
                      .+||+++|++|+|||||+++++++.+.+.+.||.+..+.. ....++..+.+.+||++|.+.+. ....+++.++++++|
T Consensus         2 eiKi~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~~~~~~-~~~~~~~~~~l~i~D~~g~~~~~-~~~~~~~~~~~~ilv   79 (168)
T d2atva1           2 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRH-QATIDDEVVSMEILDTAGQEDTI-QREGHMRWGEGFVLV   79 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEE-EEEETTEEEEEEEEECCCCCCCH-HHHHHHHHCSEEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeccccc-cccccccceEEEEeecccccccc-cchhhhcccccceee
Confidence            5899999999999999999999999999899998877644 44568889999999999997764 456688999999999


Q ss_pred             EECCCHhHHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCC-HHHHHHHH
Q 030364           90 YDITSMDSFERAKKWVQELQRQ-GNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHN-VNELFYEI  167 (178)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~-i~~~~~~l  167 (178)
                      ||++++++++.+..|+...... ..++.|+++|+||+|+...+.+..+++..+++.++++|++|||++|.| |+++|..|
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~Saktg~gnV~e~F~~l  159 (168)
T d2atva1          80 YDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYEL  159 (168)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHHHH
T ss_pred             cccCCccchhhhhhhcccccccccccCcceeeeccchhhhhhccCcHHHHHHHHHHhCCeEEEEccccCCcCHHHHHHHH
Confidence            9999999999999887766543 347899999999999988888999999999999999999999999985 99999999


Q ss_pred             Hhhccccc
Q 030364          168 GDCTECFS  175 (178)
Q Consensus       168 ~~~i~~~~  175 (178)
                      ++.+.+.+
T Consensus       160 ~~~i~~~r  167 (168)
T d2atva1         160 CREVRRRR  167 (168)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhc
Confidence            99887654

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-37  Score=206.40  Aligned_cols=166  Identities=40%  Similarity=0.701  Sum_probs=144.2

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHHhCcCCCC-ccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEE
Q 030364            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDF-QESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA   86 (178)
Q Consensus         8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~   86 (178)
                      +..+||+++|+++||||||++++..+++... +.++.+.+.....+..++..+.+.+||++|++.+...+..+++++|++
T Consensus         4 d~~fKi~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~d~~   83 (170)
T d2g6ba1           4 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHAL   83 (170)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSEE
T ss_pred             ceEEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeeeeeEEEEEEecCcEEEEEEEECCCchhhHHHHHHhhcCCcee
Confidence            4578999999999999999999999987544 455567788888889999999999999999999999999999999999


Q ss_pred             EEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Q 030364           87 VVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYE  166 (178)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  166 (178)
                      ++|||.++++++..+..|+..+........|+++++||+|......+..+++..+++.++++|++|||++|.|++++|++
T Consensus        84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~d~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gi~e~f~~  163 (170)
T d2g6ba1          84 LLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTA  163 (170)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHH
T ss_pred             EEEecCCcccchhhhhhhhhhhhhccCCCceEEEEEeeechhhcccccHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHH
Confidence            99999999999999999999888877778999999999999988899999999999999999999999999999999999


Q ss_pred             HHhhccc
Q 030364          167 IGDCTEC  173 (178)
Q Consensus       167 l~~~i~~  173 (178)
                      |++.|.+
T Consensus       164 l~~~i~k  170 (170)
T d2g6ba1         164 IAKELKR  170 (170)
T ss_dssp             HHHHHHC
T ss_pred             HHHHcCC
Confidence            9998753

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.3e-39  Score=213.33  Aligned_cols=161  Identities=34%  Similarity=0.576  Sum_probs=141.6

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEE
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVV   88 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~   88 (178)
                      -++||+++|++|+|||||++++.++.+...+.||.+.++....+..++..+.+.+||++|+..+...+..+++++|++++
T Consensus         2 ~~~Ki~vvG~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il   81 (170)
T d1i2ma_           2 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAII   81 (170)
T ss_dssp             EEEEEEEEECTTSSHHHHHHTTC-----CCEEEETTEEEEEEEECBTTCCEEEEEEECTTHHHHSSCGGGGTTTCCEEEE
T ss_pred             eeEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeccccccccccccccccccccccccccccceecchhcccccchhh
Confidence            36899999999999999999999999998899999988888888899999999999999999999999999999999999


Q ss_pred             EEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Q 030364           89 VYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIG  168 (178)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  168 (178)
                      |||+++++||+++..|+..+.+.. ++.|+++|+||+|+......  ++...++...+++|++|||++|.|++++|.+|+
T Consensus        82 v~d~~~~~Sf~~~~~~~~~~~~~~-~~~piilvgnK~Dl~~~~~~--~~~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l~  158 (170)
T d1i2ma_          82 MFDVTSRVTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRKVK--AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLA  158 (170)
T ss_dssp             EEETTSGGGGTTHHHHHHHHHHHH-CSCCEEEEEECCCCSCSCCT--TTSHHHHSSCSSEEEEEBTTTTBTTTHHHHHHH
T ss_pred             ccccccccccchhHHHHHHHhhcc-CCCceeeecchhhhhhhhhh--hHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            999999999999999998887763 68999999999999765543  345577888999999999999999999999999


Q ss_pred             hhcc
Q 030364          169 DCTE  172 (178)
Q Consensus       169 ~~i~  172 (178)
                      +.+-
T Consensus       159 ~~l~  162 (170)
T d1i2ma_         159 RKLI  162 (170)
T ss_dssp             HHHH
T ss_pred             HHHc
Confidence            8764

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.9e-38  Score=210.68  Aligned_cols=166  Identities=31%  Similarity=0.569  Sum_probs=148.8

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCC----------eEEEEEEEeCCCchhhhccch
Q 030364            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNE----------VTIKFDIWDTAGQERYHSLAP   77 (178)
Q Consensus         8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~i~d~~g~~~~~~~~~   77 (178)
                      +..+||+++|++|||||||+++|.++.+...+.++.+.++....+.+++          ..+.+.+||++|++.+..++.
T Consensus         3 d~~~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e~~~~~~~   82 (186)
T d2f7sa1           3 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTT   82 (186)
T ss_dssp             SEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHH
T ss_pred             CEEEEEEEECCCCcCHHHHHHHHhcCCCCCccCCcccceeeEEEEEEecccccccccccceEEeccccCCcchhhHHHHH
Confidence            4578999999999999999999999999888888888777666665533          357899999999999999999


Q ss_pred             hhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCC
Q 030364           78 MYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKS  156 (178)
Q Consensus        78 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  156 (178)
                      .+++++|++|+|||++++.+++.+..|+..+.... .+..|+++|+||+|+...+++..+++..+++.++++|++|||++
T Consensus        83 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~v~~~e~~~~~~~~~~~~~e~Sak~  162 (186)
T d2f7sa1          83 AFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAAT  162 (186)
T ss_dssp             HHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBTTT
T ss_pred             HHHhcCCEEEEEEeccccccceeeeeccchhhhhccCCCceEEEEeeeccchhhhcchHHHHHHHHHHcCCEEEEEeCCC
Confidence            99999999999999999999999999988776543 46788999999999999889999999999999999999999999


Q ss_pred             CCCHHHHHHHHHhhccc
Q 030364          157 AHNVNELFYEIGDCTEC  173 (178)
Q Consensus       157 ~~~i~~~~~~l~~~i~~  173 (178)
                      |.|++++|++|++.+.+
T Consensus       163 ~~~i~e~f~~l~~~i~~  179 (186)
T d2f7sa1         163 GQNVEKAVETLLDLIMK  179 (186)
T ss_dssp             TBTHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHH
Confidence            99999999999998764

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.5e-37  Score=204.02  Aligned_cols=163  Identities=31%  Similarity=0.531  Sum_probs=146.8

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEE
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVV   88 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~   88 (178)
                      +++||+++|++|||||||+++|+++.+.+.+.++.+..+... ....+..+.+.+||++|.+.+...+..+++.++++++
T Consensus         2 ~e~Ki~viG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ii   80 (166)
T d1ctqa_           2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC   80 (166)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEE-EEETTEEEEEEEEEECCCGGGHHHHHHHHHHCSEEEE
T ss_pred             CeeEEEEECCCCCCHHHHHHHHHhCCCCCccCCccceeeccc-eeeeceeeeeeeeeccCccccccchhhhhhcccccce
Confidence            468999999999999999999999999888888888766544 5678888999999999999999999999999999999


Q ss_pred             EEECCCHhHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Q 030364           89 VYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI  167 (178)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  167 (178)
                      |||.+++.+++.+..|+..+.... .++.|+++|+||+|+.. +.+..+++..+++.++++|++|||++|.|++++|.+|
T Consensus        81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~e~Sak~g~gi~e~f~~i  159 (166)
T d1ctqa_          81 VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL  159 (166)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHTCSSCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHH
T ss_pred             eecccccccHHHHHHHHHHHHHhcCCCCCeEEEEeccccccc-ccccHHHHHHHHHHhCCeEEEEcCCCCcCHHHHHHHH
Confidence            999999999999999999987753 46799999999999864 5667788999999999999999999999999999999


Q ss_pred             Hhhccc
Q 030364          168 GDCTEC  173 (178)
Q Consensus       168 ~~~i~~  173 (178)
                      ++.+.+
T Consensus       160 ~~~i~~  165 (166)
T d1ctqa_         160 VREIRQ  165 (166)
T ss_dssp             HHHHHT
T ss_pred             HHHHHh
Confidence            998753

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.6e-37  Score=203.95  Aligned_cols=163  Identities=39%  Similarity=0.730  Sum_probs=145.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEE
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVV   89 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v   89 (178)
                      -+||+++|.+|+|||||+++++.+.+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++++|++++|
T Consensus         2 ~~Ki~vvG~~~vGKTSli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v   81 (166)
T d1g16a_           2 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILV   81 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCCccceeEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEE
Confidence            47999999999999999999999999998999999999999999999999999999999999999999999999999999


Q ss_pred             EECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHh
Q 030364           90 YDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIGD  169 (178)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  169 (178)
                      ||.+++++++.+..|+..+........|++++++|.|+.. +....++...+++.+++++++|||++|.|++++|++|++
T Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~i~~~~k~d~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~e~f~~l~~  160 (166)
T d1g16a_          82 YDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMET-RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAK  160 (166)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTT-CCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHH
T ss_pred             EECCCccCHHHHHhhhhhhhccccCcceeeeecchhhhhh-hhhhHHHHHHHHHhcCCeEEEECCCCCCCHHHHHHHHHH
Confidence            9999999999999999988888788899999999999754 556678889999999999999999999999999999998


Q ss_pred             hccc
Q 030364          170 CTEC  173 (178)
Q Consensus       170 ~i~~  173 (178)
                      .+.+
T Consensus       161 ~i~~  164 (166)
T d1g16a_         161 LIQE  164 (166)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            8753

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-36  Score=205.12  Aligned_cols=164  Identities=24%  Similarity=0.365  Sum_probs=144.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEE
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVV   89 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v   89 (178)
                      .+||+++|++|||||||++++..+.+...+.++.+.. .......++..+.+.+||++|++.+...+..+++.+|++++|
T Consensus         3 ~iKvvllG~~~vGKTSli~r~~~~~f~~~~~~t~~~~-~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv   81 (191)
T d2ngra_           3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDN-YAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC   81 (191)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEE-EEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeee-cceeEeeCCceeeeeccccccchhhhhhhhhcccccceeecc
Confidence            6899999999999999999999999998888888754 455567788899999999999999999999999999999999


Q ss_pred             EECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcc------------ccccCHHHHHHHHHHcC-CeEEEEeCCC
Q 030364           90 YDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEE------------KRKVKNEEGELYAQENG-LSFLETSAKS  156 (178)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~-~~~~~~Sa~~  156 (178)
                      ||+++++||+++..|+........++.|+++|+||+|+.+            ...+..+++..+++.++ ++|++|||++
T Consensus        82 ~d~~~~~Sf~~~~~~~~~~~~~~~~~~~i~lvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~  161 (191)
T d2ngra_          82 FSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALT  161 (191)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSCEEECCTTT
T ss_pred             cccchHHHHHHHHHHHHHHHhhcCCCCceEEEeccccccccchhhhhhhhcccccccHHHHHHHHHHcCCCeEEEEeCCC
Confidence            9999999999998766665555567899999999999864            23577888999998864 7999999999


Q ss_pred             CCCHHHHHHHHHhhcccc
Q 030364          157 AHNVNELFYEIGDCTECF  174 (178)
Q Consensus       157 ~~~i~~~~~~l~~~i~~~  174 (178)
                      |.||+++|+.+++.+.+.
T Consensus       162 ~~~V~e~f~~l~~~~~~~  179 (191)
T d2ngra_         162 QKGLKNVFDEAILAALEP  179 (191)
T ss_dssp             CTTHHHHHHHHHHHHTSC
T ss_pred             CcCHHHHHHHHHHHHhcC
Confidence            999999999999876544

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.5e-37  Score=205.03  Aligned_cols=167  Identities=26%  Similarity=0.438  Sum_probs=143.7

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEE
Q 030364            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA   86 (178)
Q Consensus         7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~   86 (178)
                      .++.+||+|+|.+|||||||+++|+.+.+...+.++.+.. ....+..++..+.+.+||++|++.+...+..+++.+|++
T Consensus         2 ~p~~iKivviG~~~vGKTsli~~~~~~~f~~~~~~ti~~~-~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~   80 (183)
T d1mh1a_           2 SPQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDN-YSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVS   80 (183)
T ss_dssp             CCEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCE-EEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEE
T ss_pred             CceeEEEEEECCCCCCHHHHHHHHHhCCCCcccccceeec-eeeeeeccCcceEEEeecccccccchhhhhhccccccee
Confidence            4568999999999999999999999999998888887744 455667889999999999999999999999999999999


Q ss_pred             EEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccc------------cccCHHHHHHHHHHcC-CeEEEEe
Q 030364           87 VVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEK------------RKVKNEEGELYAQENG-LSFLETS  153 (178)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~S  153 (178)
                      ++|||++++++|+++..|+.........+.|+++|+||+|+...            ......++..+++.++ ++|++||
T Consensus        81 ilv~d~~~~~sf~~i~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~E~S  160 (183)
T d1mh1a_          81 LICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS  160 (183)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred             eeeeccchHHHHHHHHHHHHHHHHHhCCCCcEEEEeecccchhhhhhhhhhhhccccchhhHHHHHHHHHcCCceEEEcC
Confidence            99999999999999977555554444678999999999998543            2345567788888877 7999999


Q ss_pred             CCCCCCHHHHHHHHHhhcccc
Q 030364          154 AKSAHNVNELFYEIGDCTECF  174 (178)
Q Consensus       154 a~~~~~i~~~~~~l~~~i~~~  174 (178)
                      |++|.||+++|+.|++.+...
T Consensus       161 Ak~~~~V~e~F~~l~~~il~p  181 (183)
T d1mh1a_         161 ALTQRGLKTVFDEAIRAVLCP  181 (183)
T ss_dssp             TTTCTTHHHHHHHHHHHHSCC
T ss_pred             CCCCcCHHHHHHHHHHHHcCC
Confidence            999999999999999987643

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.8e-37  Score=203.75  Aligned_cols=164  Identities=29%  Similarity=0.362  Sum_probs=140.8

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCcCC-CCccCceeeeEEEEEEEeCCeEEEEEEEeCCC---chhhhccchhhhcCCc
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFF-DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAG---QERYHSLAPMYYRGAA   84 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g---~~~~~~~~~~~~~~~d   84 (178)
                      ..+||+++|.+|+|||||++++.++.+. ....++.+.+.....+.+++..+.+.+||+++   ++++  .+..+++.+|
T Consensus         2 ~~~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~e~~--~~~~~~~~~~   79 (172)
T d2g3ya1           2 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGD   79 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHH--HHHCCCCCCS
T ss_pred             CEEEEEEECCCCcCHHHHHHHHHhCcCCccccccceeeecceeeeccCCceeeeeeeccccccccccc--cccccccccc
Confidence            5789999999999999999999987654 33445666677778888999999999999875   4444  4567889999


Q ss_pred             EEEEEEECCCHhHHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHH
Q 030364           85 AAVVVYDITSMDSFERAKKWVQELQRQ-GNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNEL  163 (178)
Q Consensus        85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~  163 (178)
                      ++|+|||++++++++.+..|+..+... ..++.|+++|+||+|+...+++..+++..+++.++++|++|||++|.|++++
T Consensus        80 ~~ilvfd~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~g~~i~~~  159 (172)
T d2g3ya1          80 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKEL  159 (172)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHH
T ss_pred             eeeeeecccccchhhhhhhhhhhhhhccccCCceEEEEeccccccccccccHHHHHHHHHHcCCeEEEEeCCCCcCHHHH
Confidence            999999999999999999999888764 3478999999999999988889999999999999999999999999999999


Q ss_pred             HHHHHhhcccc
Q 030364          164 FYEIGDCTECF  174 (178)
Q Consensus       164 ~~~l~~~i~~~  174 (178)
                      |.+|++++...
T Consensus       160 f~~l~~~i~~r  170 (172)
T d2g3ya1         160 FEGIVRQVRLR  170 (172)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHc
Confidence            99999988654

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2e-36  Score=201.68  Aligned_cols=166  Identities=37%  Similarity=0.655  Sum_probs=151.9

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEE
Q 030364            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (178)
Q Consensus         8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i   87 (178)
                      .+.+||+++|.+|+|||||+++|.++++.+.+.++.+.......+..++..+.+.+||+||++.+..++..++..+|+++
T Consensus         5 ~~~iKi~vvG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii   84 (177)
T d1x3sa1           5 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVI   84 (177)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEE
T ss_pred             cceeEEEEECCCCcCHHHHHHHHHhCCCCCccccceeecceeEEEEEeccccEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence            45789999999999999999999999999989999988888888999999999999999999999999999999999999


Q ss_pred             EEEECCCHhHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Q 030364           88 VVYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYE  166 (178)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  166 (178)
                      +|||++++++++.+..|+..+.... ....|+++++||.|.. .+++...+...+++.++++|++|||++|.|++++|++
T Consensus        85 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~i~~~~nk~d~~-~~~v~~~~~~~~~~~~~~~~~e~Sa~tg~gv~e~f~~  163 (177)
T d1x3sa1          85 LVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE-NREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEE  163 (177)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSS-SCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEEECCCccccccchhhhhhhcccccccceeeEEEeeccccc-cccccHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHH
Confidence            9999999999999999999887654 4578899999999964 4677888899999999999999999999999999999


Q ss_pred             HHhhcccc
Q 030364          167 IGDCTECF  174 (178)
Q Consensus       167 l~~~i~~~  174 (178)
                      |++.+.+.
T Consensus       164 l~~~l~~~  171 (177)
T d1x3sa1         164 LVEKIIQT  171 (177)
T ss_dssp             HHHHHHTS
T ss_pred             HHHHHccC
Confidence            99877654

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.5e-36  Score=199.05  Aligned_cols=159  Identities=35%  Similarity=0.645  Sum_probs=145.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhc-cchhhhcCCcEEEE
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHS-LAPMYYRGAAAAVV   88 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~-~~~~~~~~~d~~i~   88 (178)
                      .+||+++|.+|||||||++++..+++...+.++.+................+.+||++|...+.. .+..+++++|++++
T Consensus         2 ~~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~il   81 (165)
T d1z06a1           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVF   81 (165)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCcccccccceeeeeeeccceEEEEEeccCchhhccccceeeecCCCceEE
Confidence            58999999999999999999999999998999999888888899999999999999999877665 46778999999999


Q ss_pred             EEECCCHhHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCC---CCCHHHHH
Q 030364           89 VYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKS---AHNVNELF  164 (178)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~~i~~~~  164 (178)
                      |||++++++++.+..|+..+.+.. .++.|++||+||+|+.+.+++..+++..+++.++++|++|||++   +.||+++|
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAkt~~~~~~V~e~F  161 (165)
T d1z06a1          82 VYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIF  161 (165)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHHHHH
T ss_pred             EEEeehhhhhhhhhhhhHHHHhhccCCCCeEEEEeccccchhccchhHHHHHHHHHHCCCEEEEEecccCCcCcCHHHHH
Confidence            999999999999999999987754 47899999999999998888999999999999999999999987   46999999


Q ss_pred             HHHH
Q 030364          165 YEIG  168 (178)
Q Consensus       165 ~~l~  168 (178)
                      .+|+
T Consensus       162 ~~lA  165 (165)
T d1z06a1         162 MTLA  165 (165)
T ss_dssp             HHHC
T ss_pred             HHhC
Confidence            9874

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.2e-36  Score=199.12  Aligned_cols=165  Identities=34%  Similarity=0.590  Sum_probs=146.0

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEE
Q 030364            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA   86 (178)
Q Consensus         7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~   86 (178)
                      +++.+||+|+|.+|||||||++++..+++.+.+.++.+..........++..+.+.+||++|...+...+..++..++++
T Consensus         3 ~~~~~KI~vvG~~~vGKSSli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~   82 (174)
T d1wmsa_           3 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCC   82 (174)
T ss_dssp             CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHHhCCCCCccccceeeeeeeeeeeecCceeeEeeecccCcceehhhhhhhhhccceE
Confidence            55688999999999999999999999999998999999998888889999999999999999999999999999999999


Q ss_pred             EEEEECCCHhHHHHHHHHHHHHHHhC----CCCceEEEEEeCCCCccccccCHHHHHHHHHHc-CCeEEEEeCCCCCCHH
Q 030364           87 VVVYDITSMDSFERAKKWVQELQRQG----NPNLIMFLVANKVDLEEKRKVKNEEGELYAQEN-GLSFLETSAKSAHNVN  161 (178)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~  161 (178)
                      ++++|.+++.+++.+..|+..+....    .++.|+++|+||+|+.+ +.+..+++..+++.. .++|++|||++|.||+
T Consensus        83 i~~~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~~-~~v~~~~~~~~~~~~~~~~~~e~Sak~~~gI~  161 (174)
T d1wmsa_          83 LLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISE-RQVSTEEAQAWCRDNGDYPYFETSAKDATNVA  161 (174)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSS-CSSCHHHHHHHHHHTTCCCEEECCTTTCTTHH
T ss_pred             EEEEeeecccccchhhhHHHHHHHHhccccCCCceEEEeccccchhh-ccCcHHHHHHHHHHcCCCeEEEEcCCCCcCHH
Confidence            99999999999999999998876532    35789999999999864 677888899999876 4899999999999999


Q ss_pred             HHHHHHHhhcc
Q 030364          162 ELFYEIGDCTE  172 (178)
Q Consensus       162 ~~~~~l~~~i~  172 (178)
                      ++|++|++.+-
T Consensus       162 e~f~~l~~~il  172 (174)
T d1wmsa_         162 AAFEEAVRRVL  172 (174)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999998874

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=6.2e-36  Score=199.48  Aligned_cols=162  Identities=26%  Similarity=0.434  Sum_probs=141.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEE
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVV   89 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v   89 (178)
                      ++||+++|.+|||||||++++..+.+.+.+.|+.+... ......++..+.+.+||++|++.+...+..+++.+|++++|
T Consensus         2 ~~KivliG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv   80 (179)
T d1m7ba_           2 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLIC   80 (179)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCCCccCCceeecc-cccccccceEEeeccccccccccccccccchhhhhhhhhee
Confidence            58999999999999999999999999988888876444 44566788899999999999999999999999999999999


Q ss_pred             EECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcc------------ccccCHHHHHHHHHHcC-CeEEEEeCCC
Q 030364           90 YDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEE------------KRKVKNEEGELYAQENG-LSFLETSAKS  156 (178)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~-~~~~~~Sa~~  156 (178)
                      ||+++++||+.+..|+........++.|+++|+||+|+..            .+.+..++...+++.++ ++|++|||++
T Consensus        81 ~d~~~~~Sf~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~~~~y~E~SAk~  160 (179)
T d1m7ba_          81 FDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQ  160 (179)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBTTT
T ss_pred             eecccCCCHHHHHHHHHHHHhccCCcceEEEEEecccccccchhhHHHhhhhcCcchHHHHHHHHHHhCCCeEEEEeCCC
Confidence            9999999999988777665555567999999999999853            35577888999998877 5999999999


Q ss_pred             CC-CHHHHHHHHHhhcc
Q 030364          157 AH-NVNELFYEIGDCTE  172 (178)
Q Consensus       157 ~~-~i~~~~~~l~~~i~  172 (178)
                      |. |++++|+.+++.+.
T Consensus       161 ~~n~i~~~F~~~~~~~l  177 (179)
T d1m7ba_         161 SENSVRDIFHVATLACV  177 (179)
T ss_dssp             BHHHHHHHHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHHh
Confidence            98 59999999988764

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=5.7e-36  Score=200.59  Aligned_cols=163  Identities=36%  Similarity=0.655  Sum_probs=144.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEE
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVV   89 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v   89 (178)
                      -+||+|+|.+|||||||+++++++++...+.++.+.++........+..+.+.+||++|...+...+..++..+|+++++
T Consensus         2 ~~Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~   81 (184)
T d1vg8a_           2 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLV   81 (184)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCccceeeeeeeeeeCCceEEEEeeecCCcccccccccccccCccEEEEe
Confidence            47999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EECCCHhHHHHHHHHHHHHHHhC----CCCceEEEEEeCCCCccccccCHHHHHHHHH-HcCCeEEEEeCCCCCCHHHHH
Q 030364           90 YDITSMDSFERAKKWVQELQRQG----NPNLIMFLVANKVDLEEKRKVKNEEGELYAQ-ENGLSFLETSAKSAHNVNELF  164 (178)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~~~~~----~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~~~  164 (178)
                      ||.+++.+++.+..|+..+....    ..+.|+++|+||+|+.+. .+..++...++. ..++++++|||++|.||+++|
T Consensus        82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~e~Sak~~~gI~e~f  160 (184)
T d1vg8a_          82 FDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENR-QVATKRAQAWCYSKNNIPYFETSAKEAINVEQAF  160 (184)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCC-CSCHHHHHHHHHHTTSCCEEECBTTTTBSHHHHH
T ss_pred             ecccchhhhhcchhhHHHHHHHhccccccCCCEEEEEEeeccccc-chhHHHHHHHHHHhcCCeEEEEcCCCCcCHHHHH
Confidence            99999999999999998876642    246899999999998664 455556666654 467999999999999999999


Q ss_pred             HHHHhhccc
Q 030364          165 YEIGDCTEC  173 (178)
Q Consensus       165 ~~l~~~i~~  173 (178)
                      ++|++.+.+
T Consensus       161 ~~l~~~i~~  169 (184)
T d1vg8a_         161 QTIARNALK  169 (184)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999887654

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6.1e-36  Score=198.92  Aligned_cols=164  Identities=37%  Similarity=0.639  Sum_probs=130.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEe-CCeEEEEEEEeCCCchhhhccchhhhcCCcEEEE
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSL-NEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVV   88 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~   88 (178)
                      .+||+++|++|||||||+++|.++++.+.+.++.+.......... +...+.+.+||++|++.+...+..+++.++++++
T Consensus         2 ~~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   81 (175)
T d1ky3a_           2 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVL   81 (175)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHcCCCCCccCcccccceeeeeeeecCcccccceeeccCCchhhhhHHHHHhhccceEEE
Confidence            589999999999999999999999998888888877666666554 4445778999999999999999999999999999


Q ss_pred             EEECCCHhHHHHHHHHHHHHHHhC----CCCceEEEEEeCCCCcccc-ccCHHHHHHHHHHcC-CeEEEEeCCCCCCHHH
Q 030364           89 VYDITSMDSFERAKKWVQELQRQG----NPNLIMFLVANKVDLEEKR-KVKNEEGELYAQENG-LSFLETSAKSAHNVNE  162 (178)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~~----~~~~~~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~  162 (178)
                      |||.+++.|++.+..|+..+....    ..+.|+++++||+|+.+.+ .+..+++..+++.++ ++|++|||++|.|+++
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~e~SA~~g~gv~e  161 (175)
T d1ky3a_          82 VYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDT  161 (175)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBSHHH
T ss_pred             EeecccccccchhhhcchhhhhhhhhcccccCcEEEEecccchhhhhcchhHHHHHHHHHHcCCCeEEEEeCCCCcCHHH
Confidence            999999999999999998886532    3578999999999997654 467778889998886 7999999999999999


Q ss_pred             HHHHHHhhccc
Q 030364          163 LFYEIGDCTEC  173 (178)
Q Consensus       163 ~~~~l~~~i~~  173 (178)
                      +|.+|++.+.+
T Consensus       162 ~f~~l~~~~l~  172 (175)
T d1ky3a_         162 AFEEIARSALQ  172 (175)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999987654

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.9e-34  Score=189.87  Aligned_cols=161  Identities=22%  Similarity=0.325  Sum_probs=134.1

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEE
Q 030364            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (178)
Q Consensus         8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i   87 (178)
                      -+.+||+++|.+|||||||++++.++.+.. ..++.+..+ ...+..++..+.+.+||++|+..+     .+++.+|++|
T Consensus         3 ~p~~ki~vlG~~~vGKTsLi~~~~~~~f~~-~~~t~~~~~-~~~i~v~~~~~~l~i~Dt~g~~~~-----~~~~~ad~~i   75 (175)
T d2bmja1           3 IPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQY-KKEMLVDGQTHLVLIREEAGAPDA-----KFSGWADAVI   75 (175)
T ss_dssp             CCEEEEEEECCTTTTHHHHHHHHHHSCCCC-CCCSSCEEE-EEEEEETTEEEEEEEEECSSCCCH-----HHHHHCSEEE
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHhCCCCC-cCCccceeE-EEEeecCceEEEEEEeeccccccc-----ccccccceeE
Confidence            358999999999999999999999998865 445544444 566788999999999999998653     4788999999


Q ss_pred             EEEECCCHhHHHHHHHHHHHHHHhC---CCCceEEEEEeCCCCc--cccccCHHHHHHHHHH-cCCeEEEEeCCCCCCHH
Q 030364           88 VVYDITSMDSFERAKKWVQELQRQG---NPNLIMFLVANKVDLE--EKRKVKNEEGELYAQE-NGLSFLETSAKSAHNVN  161 (178)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~~ivv~nK~D~~--~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~  161 (178)
                      +|||+++++||+++..|+..+....   ....|+++|+||.|+.  ..+.+..+++..++.. ++++|++|||++|.|++
T Consensus        76 lVfd~~~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~v~  155 (175)
T d2bmja1          76 FVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALCADMKRCSYYETCATYGLNVD  155 (175)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECTTCCSSSCCCSCHHHHHHHHHTSTTEEEEEEBTTTTBTHH
T ss_pred             EEeecccchhhhhhHHHHHHHHHHhhcccCCccEEEEeeecCcchhhhcchhHHHHHHHHHHhCCCeEEEeCCCCCcCHH
Confidence            9999999999999999998876543   3677999999988874  4456777788888654 57899999999999999


Q ss_pred             HHHHHHHhhccccc
Q 030364          162 ELFYEIGDCTECFS  175 (178)
Q Consensus       162 ~~~~~l~~~i~~~~  175 (178)
                      ++|..|++.+.+.+
T Consensus       156 ~~F~~l~~~i~~~~  169 (175)
T d2bmja1         156 RVFQEVAQKVVTLR  169 (175)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999886654

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=100.00  E-value=5.4e-35  Score=192.42  Aligned_cols=160  Identities=23%  Similarity=0.324  Sum_probs=129.7

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEE
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVV   88 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~   88 (178)
                      +++||+++|++|+|||||+++|..+.+.+.+.||.+.++.  .+..++  +.+.+||+||+..+...+..++..++++++
T Consensus         1 ~e~ki~i~G~~~~GKTsLl~~l~~~~~~~~~~~T~~~~~~--~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   76 (164)
T d1zd9a1           1 EEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR--KITKGN--VTIKLWDIGGQPRFRSMWERYCRGVSAIVY   76 (164)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE--EEEETT--EEEEEEEECCSHHHHTTHHHHHTTCSEEEE
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHcCCCCCcccccceeeee--eeeeee--EEEEEeeccccccccccccccccccchhhc
Confidence            3789999999999999999999999998888888775543  334443  678899999999999999999999999999


Q ss_pred             EEECCCHhHHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCccccccCH---HHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Q 030364           89 VYDITSMDSFERAKKWVQELQRQ-GNPNLIMFLVANKVDLEEKRKVKN---EEGELYAQENGLSFLETSAKSAHNVNELF  164 (178)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~ivv~nK~D~~~~~~~~~---~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  164 (178)
                      |||++++++++....++..+... ..++.|+++|+||+|+.+......   ......+...+++++++||++|.|++++|
T Consensus        77 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi~lv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~~  156 (164)
T d1zd9a1          77 MVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITL  156 (164)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHH
T ss_pred             ccccccccccchhhhhhhhhhhhhcccCCcEEEEEeccccchhhhHHHHHHHHHHHHHHhCCCEEEEEeCcCCcCHHHHH
Confidence            99999999999998888776654 357899999999999865432211   11111222345689999999999999999


Q ss_pred             HHHHhhcc
Q 030364          165 YEIGDCTE  172 (178)
Q Consensus       165 ~~l~~~i~  172 (178)
                      +||++.++
T Consensus       157 ~~l~~~~k  164 (164)
T d1zd9a1         157 QWLIQHSK  164 (164)
T ss_dssp             HHHHHTCC
T ss_pred             HHHHHccC
Confidence            99999763

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=100.00  E-value=7e-34  Score=189.02  Aligned_cols=162  Identities=19%  Similarity=0.254  Sum_probs=125.6

Q ss_pred             CCCCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCc
Q 030364            5 SNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAA   84 (178)
Q Consensus         5 ~~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d   84 (178)
                      ..+++.+||+++|++|||||||++++.++++.. ..++.+.  ....+..++  +.+.+||++|++.+...+..+++.+|
T Consensus        11 ~~~~~~~kI~vvG~~~vGKSsLi~~l~~~~~~~-~~~~~~~--~~~~i~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~   85 (176)
T d1fzqa_          11 SAPDQEVRILLLGLDNAGKTTLLKQLASEDISH-ITPTQGF--NIKSVQSQG--FKLNVWDIGGQRKIRPYWRSYFENTD   85 (176)
T ss_dssp             SCCSSCEEEEEEESTTSSHHHHHHHHCCSCCEE-EEEETTE--EEEEEEETT--EEEEEEECSSCGGGHHHHHHHHTTCS
T ss_pred             CCCCCEEEEEEECCCCCCHHHHHHHHhcCCCCc-ceeeeee--eEEEeccCC--eeEeEeeccccccchhHHHHHhhccc
Confidence            445678999999999999999999999887643 2333332  333444444  67889999999999999999999999


Q ss_pred             EEEEEEECCCHhHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCccccccCHHHH---HHHHHHcCCeEEEEeCCCCCCH
Q 030364           85 AAVVVYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEG---ELYAQENGLSFLETSAKSAHNV  160 (178)
Q Consensus        85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~---~~~~~~~~~~~~~~Sa~~~~~i  160 (178)
                      ++++|||++++.++..+..++..+.... ..+.|+++++||+|+..+........   ...+....+++++|||++|+|+
T Consensus        86 ~ii~v~d~~d~~s~~~~~~~~~~~~~~~~~~~~pillv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~gv  165 (176)
T d1fzqa_          86 ILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGV  165 (176)
T ss_dssp             EEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTH
T ss_pred             eeEEeeccccccchhhhhhhhhhhhhhhccCCCeEEEEEEeccccccccHHHHHHHHHHHHHHhcCCEEEEEeCCCCCCH
Confidence            9999999999999999988877765543 46789999999999976433211110   1122234568999999999999


Q ss_pred             HHHHHHHHhhc
Q 030364          161 NELFYEIGDCT  171 (178)
Q Consensus       161 ~~~~~~l~~~i  171 (178)
                      +++|+||++.+
T Consensus       166 ~e~~~~l~~~i  176 (176)
T d1fzqa_         166 QDGMNWVCKNV  176 (176)
T ss_dssp             HHHHHHHHHTC
T ss_pred             HHHHHHHHhcC
Confidence            99999999875

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=100.00  E-value=1.5e-33  Score=185.66  Aligned_cols=160  Identities=19%  Similarity=0.254  Sum_probs=124.7

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEE
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVV   88 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~   88 (178)
                      +.+||+++|++|||||||+++|.++.+. .+.++.+...  ..+..++  +.+.+||+||++.+...+..++..++++++
T Consensus         1 k~~ki~ivG~~~~GKTsLi~~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~   75 (165)
T d1ksha_           1 RELRLLMLGLDNAGKTTILKKFNGEDVD-TISPTLGFNI--KTLEHRG--FKLNIWDVGGQKSLRSYWRNYFESTDGLIW   75 (165)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHTTCCCS-SCCCCSSEEE--EEEEETT--EEEEEEEECCSHHHHTTGGGGCTTCSEEEE
T ss_pred             CcEEEEEECCCCCCHHHHHHHHcCCCCC-cccceEeeee--eeccccc--cceeeeecCcchhhhhHHHhhhhhhhccee
Confidence            4689999999999999999999877654 3566665433  3334444  778899999999999999999999999999


Q ss_pred             EEECCCHhHHHHHHHHHHHHHH-hCCCCceEEEEEeCCCCccccccCHHHHHHH---HHHcCCeEEEEeCCCCCCHHHHH
Q 030364           89 VYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY---AQENGLSFLETSAKSAHNVNELF  164 (178)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~-~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~---~~~~~~~~~~~Sa~~~~~i~~~~  164 (178)
                      |||.++..++.....++..... ....+.|+++|+||+|+.+...+........   ....++++++|||++|+|++++|
T Consensus        76 v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~  155 (165)
T d1ksha_          76 VVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGI  155 (165)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHH
T ss_pred             eeecccchhHHHHHHhhhhhhhhcccCCCceEEEEeccccccccCHHHHHHHHHhhhhhcCCCEEEEEECCCCCCHHHHH
Confidence            9999999999888777666544 3357899999999999976444332221111   12234689999999999999999


Q ss_pred             HHHHhhccc
Q 030364          165 YEIGDCTEC  173 (178)
Q Consensus       165 ~~l~~~i~~  173 (178)
                      +||++++..
T Consensus       156 ~~l~~~i~~  164 (165)
T d1ksha_         156 DWLLDDISS  164 (165)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHc
Confidence            999988753

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=100.00  E-value=1.6e-33  Score=186.88  Aligned_cols=160  Identities=22%  Similarity=0.390  Sum_probs=123.3

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEE
Q 030364            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (178)
Q Consensus         8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i   87 (178)
                      ++.+||+++|.+|||||||++++.++.+.. ..++.+..  .......  .+.+.+||+||...+...+..+++.+++++
T Consensus        10 ~k~~kIvlvG~~~vGKTSli~rl~~~~~~~-~~~t~~~~--~~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~~~ii   84 (173)
T d1e0sa_          10 NKEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFN--VETVTYK--NVKFNVWDVGGQDKIRPLWRHYYTGTQGLI   84 (173)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHTTCCCCEE-EEEETTEE--EEEEEET--TEEEEEEEESCCGGGHHHHGGGTTTCCEEE
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhcCCCCC-ccceeeee--EEEeecc--ceeeEEecCCCcchhhhHHHhhhcccceEE
Confidence            458999999999999999999998877543 22333322  2222333  467889999999999999999999999999


Q ss_pred             EEEECCCHhHHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCccccccCH---HHHHHHHHHcCCeEEEEeCCCCCCHHHH
Q 030364           88 VVYDITSMDSFERAKKWVQELQRQ-GNPNLIMFLVANKVDLEEKRKVKN---EEGELYAQENGLSFLETSAKSAHNVNEL  163 (178)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~ivv~nK~D~~~~~~~~~---~~~~~~~~~~~~~~~~~Sa~~~~~i~~~  163 (178)
                      +|+|+++.+++..+..|+...... ...+.|+++++||+|++++.....   ......+...++.+++|||++|+|++++
T Consensus        85 ~v~D~s~~~~~~~~~~~l~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~e~SA~tg~gv~e~  164 (173)
T d1e0sa_          85 FVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEG  164 (173)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHHH
T ss_pred             EEEecccchhHHHHHHHHHHHhhhcccccceeeeeeecccccccccHHHHHHHHHHHHHHhCCCEEEEeeCCCCcCHHHH
Confidence            999999999999988887776553 356899999999999975332211   1111223334678999999999999999


Q ss_pred             HHHHHhhcc
Q 030364          164 FYEIGDCTE  172 (178)
Q Consensus       164 ~~~l~~~i~  172 (178)
                      |+||.+.++
T Consensus       165 ~~~l~~~~k  173 (173)
T d1e0sa_         165 LTWLTSNYK  173 (173)
T ss_dssp             HHHHHHHCC
T ss_pred             HHHHHHhcC
Confidence            999998763

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=100.00  E-value=2.7e-34  Score=192.04  Aligned_cols=163  Identities=24%  Similarity=0.348  Sum_probs=123.4

Q ss_pred             CCCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcE
Q 030364            6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAA   85 (178)
Q Consensus         6 ~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~   85 (178)
                      ...+.+||+++|.+|||||||++++.++.+.. ..++.+...  .....+  .+.+.+||++|++.+...+..++..+|+
T Consensus        13 ~~~k~~KI~lvG~~~vGKTsLi~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~~~   87 (182)
T d1moza_          13 GSNKELRILILGLDGAGKTTILYRLQIGEVVT-TKPTIGFNV--ETLSYK--NLKLNVWDLGGQTSIRPYWRCYYADTAA   87 (182)
T ss_dssp             TCSSCEEEEEEEETTSSHHHHHHHTCCSEEEE-ECSSTTCCE--EEEEET--TEEEEEEEEC----CCTTGGGTTTTEEE
T ss_pred             CCCceEEEEEECCCCCCHHHHHHHHhcCCCCc-cccccceEE--EEEeeC--CEEEEEEecccccccchhHHhhhcccee
Confidence            45679999999999999999999998776643 344444333  222333  3678899999999999999999999999


Q ss_pred             EEEEEECCCHhHHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCccccccCHHHHHH-----HHHHcCCeEEEEeCCCCCC
Q 030364           86 AVVVYDITSMDSFERAKKWVQELQRQ-GNPNLIMFLVANKVDLEEKRKVKNEEGEL-----YAQENGLSFLETSAKSAHN  159 (178)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~ivv~nK~D~~~~~~~~~~~~~~-----~~~~~~~~~~~~Sa~~~~~  159 (178)
                      +++|+|.+++.++.....|+..+... ...+.|+++|+||+|+.+...  ..+...     .+...++++++|||++|+|
T Consensus        88 ii~v~d~~d~~s~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~e~SA~~g~g  165 (182)
T d1moza_          88 VIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALS--ASEVSKELNLVELKDRSWSIVASSAIKGEG  165 (182)
T ss_dssp             EEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCC--HHHHHHHTTTTTCCSSCEEEEEEBGGGTBT
T ss_pred             EEEEeeecccccchhHHHHHHHHHHhhccCCcceEEEEEeeccccccC--HHHHHHHHHHHHHhhCCCEEEEEECCCCCC
Confidence            99999999999999988887665443 346799999999999865322  222211     2233457899999999999


Q ss_pred             HHHHHHHHHhhccccc
Q 030364          160 VNELFYEIGDCTECFS  175 (178)
Q Consensus       160 i~~~~~~l~~~i~~~~  175 (178)
                      ++++|+||++.+.+.+
T Consensus       166 v~e~~~~l~~~i~~~~  181 (182)
T d1moza_         166 ITEGLDWLIDVIKEEQ  181 (182)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcC
Confidence            9999999999887643

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=99.97  E-value=3.3e-31  Score=173.16  Aligned_cols=156  Identities=17%  Similarity=0.279  Sum_probs=123.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEEE
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY   90 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~   90 (178)
                      +||+++|++|||||||++++.++++...........     ...+...+.+.+||++|...+...+..++..++++++++
T Consensus         1 ikivlvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~   75 (160)
T d1r8sa_           1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV-----ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   75 (160)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCCE-----EEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccccceeeEE-----EEEeeeeEEEEEecCCCcccchhhhhhhhccceeEEEEE
Confidence            699999999999999999999988765443333221     233445578899999999999999999999999999999


Q ss_pred             ECCCHhHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCccccccCH---HHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Q 030364           91 DITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKN---EEGELYAQENGLSFLETSAKSAHNVNELFYE  166 (178)
Q Consensus        91 d~~~~~s~~~~~~~~~~~~~~~-~~~~~~ivv~nK~D~~~~~~~~~---~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  166 (178)
                      |..++.++..+..|+..+.... ....|+++++||.|+.+......   .....+++..++++++|||++|+|++++|+|
T Consensus        76 d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~k~d~~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAktg~gi~e~~~~  155 (160)
T d1r8sa_          76 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDW  155 (160)
T ss_dssp             ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHH
T ss_pred             EecChHHHHHHHHHHHHHHHhhcccCceEEEEeecccccccccHHHHHHHHHHHHHhhCCCEEEEeECCCCCCHHHHHHH
Confidence            9999999999888887766543 46789999999999875432211   1122234445679999999999999999999


Q ss_pred             HHhhc
Q 030364          167 IGDCT  171 (178)
Q Consensus       167 l~~~i  171 (178)
                      |.+++
T Consensus       156 l~~~l  160 (160)
T d1r8sa_         156 LSNQL  160 (160)
T ss_dssp             HHHHC
T ss_pred             HHhcC
Confidence            99875

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=99.96  E-value=5.1e-29  Score=165.38  Aligned_cols=159  Identities=19%  Similarity=0.307  Sum_probs=117.4

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEE
Q 030364            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (178)
Q Consensus         8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i   87 (178)
                      ++.+||+|+|.+|||||||++++.++++.. ..++.+..  .......  .+.+.+||+++.+.....+..++..+++++
T Consensus        13 ~k~~kI~vvG~~~~GKSsLi~rl~~~~~~~-~~~~~~~~--~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~i   87 (177)
T d1zj6a1          13 HQEHKVIIVGLDNAGKTTILYQFSMNEVVH-TSPTIGSN--VEEIVIN--NTRFLMWDIGGQESLRSSWNTYYTNTEFVI   87 (177)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSCEE-EECCSCSS--CEEEEET--TEEEEEEECCC----CGGGHHHHTTCCEEE
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhcCCCCc-ccccccee--EEEEeec--ceEEEEeccccccccccchhhhhccceeee
Confidence            467999999999999999999999987754 22222222  2222233  367789999999999999999999999999


Q ss_pred             EEEECCCHhHHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCccccccCHHHHHHH----HHHcCCeEEEEeCCCCCCHHH
Q 030364           88 VVYDITSMDSFERAKKWVQELQRQ-GNPNLIMFLVANKVDLEEKRKVKNEEGELY----AQENGLSFLETSAKSAHNVNE  162 (178)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~----~~~~~~~~~~~Sa~~~~~i~~  162 (178)
                      +++|.++.+++.....+....... .....|+++|+||+|++...... +....+    +...+++++++||++|+|+++
T Consensus        88 ~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~-~i~~~~~~~~~~~~~~~~~~~Sa~tg~Gi~e  166 (177)
T d1zj6a1          88 VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVA-EISQFLKLTSIKDHQWHIQACCALTGEGLCQ  166 (177)
T ss_dssp             EEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHH-HHHHHHTGGGCCSSCEEEEECBTTTTBTHHH
T ss_pred             eecccccccchhhhhhhhhhhhhcccccceEEEEEEEcccccccCcHH-HHHHHHHHHhhHhcCCEEEEEeCCCCCCHHH
Confidence            999999999998876665555443 34789999999999986544321 111111    233457899999999999999


Q ss_pred             HHHHHHhhcc
Q 030364          163 LFYEIGDCTE  172 (178)
Q Consensus       163 ~~~~l~~~i~  172 (178)
                      +++||.++++
T Consensus       167 ~~~~L~~~lk  176 (177)
T d1zj6a1         167 GLEWMMSRLK  176 (177)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHhC
Confidence            9999998874

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=99.95  E-value=4.9e-27  Score=154.25  Aligned_cols=160  Identities=22%  Similarity=0.355  Sum_probs=121.9

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEE
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVV   88 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~   88 (178)
                      +.+||+++|.+|||||||++++.++++.. ..++.+..  ......++  +.+.+||.+|...+.......+..++++++
T Consensus         4 ke~kI~ivG~~~vGKSSLi~~~~~~~~~~-~~~~~~~~--~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (169)
T d1upta_           4 REMRILILGLDGAGKTTILYRLQVGEVVT-TIPTIGFN--VETVTYKN--LKFQVWDLGGLTSIRPYWRCYYSNTDAVIY   78 (169)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSSEE--EEEEEETT--EEEEEEEECCCGGGGGGGGGGCTTCSEEEE
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCCcc-eeccccee--eeeeccCc--eEEEEeeccccccccccchhhhhhhhhhhh
Confidence            46899999999999999999999998764 23333322  22233333  577799999999999999999999999999


Q ss_pred             EEECCCHhHHHHHHHHHHHHHH-hCCCCceEEEEEeCCCCcccccc---CHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Q 030364           89 VYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKV---KNEEGELYAQENGLSFLETSAKSAHNVNELF  164 (178)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~-~~~~~~~~ivv~nK~D~~~~~~~---~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  164 (178)
                      ++|..+..++.....++..... ......|+++++||.|+......   .......++...+++|++|||++|.|++++|
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iv~nk~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gv~e~~  158 (169)
T d1upta_          79 VVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAM  158 (169)
T ss_dssp             EEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHH
T ss_pred             hhhhhhcchhhhccchhhhhhhhhccccceEEEEEeeccccccccHHHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHH
Confidence            9999988888877665544433 34567899999999998754332   1112223344456799999999999999999


Q ss_pred             HHHHhhccc
Q 030364          165 YEIGDCTEC  173 (178)
Q Consensus       165 ~~l~~~i~~  173 (178)
                      ++|++.+++
T Consensus       159 ~~l~~~l~~  167 (169)
T d1upta_         159 EWLVETLKS  167 (169)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHh
Confidence            999998754

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=7.5e-28  Score=162.46  Aligned_cols=162  Identities=17%  Similarity=0.182  Sum_probs=124.4

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEE
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVV   88 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~   88 (178)
                      +++||+++|..|||||||+++|..+.+.  +.||.+....  .  +....+.+++||++|++.+...+..++..++++++
T Consensus         1 ke~Kiv~lG~~~vGKTsll~r~~~~~~~--~~pTiG~~~~--~--~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~   74 (200)
T d2bcjq2           1 RELKLLLLGTGESGKSTFIKQMRIIHGS--GVPTTGIIEY--P--FDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMF   74 (200)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHTSS--CCCCCSCEEE--E--EECSSCEEEEEECCCSTTGGGGGGGGCSSCSEEEE
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhCCCCC--CCceeeEEEE--E--EeccceeeeeccccccccccccccccccccceeeE
Confidence            4789999999999999999999988763  5677775532  2  33344678899999999999999999999999999


Q ss_pred             EEECCCHh-----------HHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccc----------------CHHHHHHH
Q 030364           89 VYDITSMD-----------SFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKV----------------KNEEGELY  141 (178)
Q Consensus        89 v~d~~~~~-----------s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~----------------~~~~~~~~  141 (178)
                      ++|.++..           .++....|...+......+.|+++++||.|+......                .......+
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (200)
T d2bcjq2          75 LVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREF  154 (200)
T ss_dssp             EEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCGGGSSSEEEEEEECHHHHHHHTTTSCHHHHSTTCCSCSSCHHHHHHH
T ss_pred             eeeccchhhhhhhhccccchHHHHHHHHHHHhhhhccCccEEEecchhhhhhhcccchHHHHhcccccCCchhHHHHHHH
Confidence            99998753           4566677777777776789999999999997532211                11222222


Q ss_pred             HH----------HcCCeEEEEeCCCCCCHHHHHHHHHhhcccccc
Q 030364          142 AQ----------ENGLSFLETSAKSAHNVNELFYEIGDCTECFSL  176 (178)
Q Consensus       142 ~~----------~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~~~~~  176 (178)
                      ..          ...+.+++|||++|.||+++|+.|.+.|.+.++
T Consensus       155 i~~~f~~~~~~~~~~~~~~~tSAk~~~ni~~vF~~i~~~I~~~nl  199 (200)
T d2bcjq2         155 ILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLNL  199 (200)
T ss_dssp             HHHHHHTTCSCTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhcccCCCceEEEEeEEEcCHhHHHHHHHHHHHHHHHhc
Confidence            11          123467899999999999999999988876544

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=4.2e-26  Score=149.12  Aligned_cols=151  Identities=19%  Similarity=0.238  Sum_probs=116.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEEEE
Q 030364           12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYD   91 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d   91 (178)
                      ||+++|++|||||||+++|.++++.. ..++.+....  .....  .....+||++|...+...+..++..++++++++|
T Consensus         2 KI~liG~~nvGKSSLln~l~~~~~~~-~~~t~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d   76 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKNDRLAT-LQPTWHPTSE--ELAIG--NIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVD   76 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCC-CCCCCSCEEE--EECCT--TCCEEEEECCCSGGGGGGGGGGCTTCSEEEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCe-eeceeeEeEE--EeccC--CeeEEEEeeccchhhhhhHhhhhhheeeeeeecc
Confidence            79999999999999999999988753 5555554432  22333  3556799999999999999999999999999999


Q ss_pred             CCCHhHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCccccccCHHHHHHH------------HHHcCCeEEEEeCCCCC
Q 030364           92 ITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELY------------AQENGLSFLETSAKSAH  158 (178)
Q Consensus        92 ~~~~~s~~~~~~~~~~~~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~------------~~~~~~~~~~~Sa~~~~  158 (178)
                      .++..++.....++....... ..+.|+++++||.|++....  ..+....            .....+++++|||++|+
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~k~d~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~  154 (166)
T d2qtvb1          77 AADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVS--EAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRN  154 (166)
T ss_dssp             TTCGGGHHHHHHHHHHHHTCTTTTTCCEEEEEECTTSSSCCC--HHHHHHHHTCSSCCC---CCSSCCEEEEEEBTTTTB
T ss_pred             ccchhhhhhhhHHHHhhhhhhccCCceEEEEeccccccccCC--HHHHHHHhhhhhhhHHHhhcccCCCEEEEeeCCCCC
Confidence            999999888777776665533 46889999999999865322  2222111            11234589999999999


Q ss_pred             CHHHHHHHHHh
Q 030364          159 NVNELFYEIGD  169 (178)
Q Consensus       159 ~i~~~~~~l~~  169 (178)
                      |++++|+||.+
T Consensus       155 Gv~e~~~~l~~  165 (166)
T d2qtvb1         155 GYLEAFQWLSQ  165 (166)
T ss_dssp             SHHHHHHHHTT
T ss_pred             CHHHHHHHHhC
Confidence            99999999976

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.94  E-value=9.8e-27  Score=154.49  Aligned_cols=156  Identities=17%  Similarity=0.098  Sum_probs=107.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCcCCC-CccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhh--------hccchhhh
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVKGQFFD-FQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERY--------HSLAPMYY   80 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~--------~~~~~~~~   80 (178)
                      .-.|+|+|.+|+|||||+|+|++..... ...+..+...........+  ..+.+||+||....        ......++
T Consensus         5 ~~~I~lvG~~~~GKSSLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~   82 (178)
T d1wf3a1           5 SGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGR--RQIVFVDTPGLHKPMDALGEFMDQEVYEAL   82 (178)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETT--EEEEEEECCCCCCCCSHHHHHHHHHHHHHT
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCceeecccCCcccccccceeeeee--eeeeecccccccccccccchhccccccccc
Confidence            4479999999999999999999876432 1222222333333344444  46779999996332        22234457


Q ss_pred             cCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcC-CeEEEEeCCCCCC
Q 030364           81 RGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENG-LSFLETSAKSAHN  159 (178)
Q Consensus        81 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~  159 (178)
                      ..+|++++|+|++++..... ..+.+.+. ....+.|+++|+||+|+....   .+....+.+..+ ..++++||++|.|
T Consensus        83 ~~ad~il~v~D~~~~~~~~~-~~i~~~l~-~~~~~~piilv~NK~Dl~~~~---~~~~~~~~~~~~~~~~~~iSA~~~~g  157 (178)
T d1wf3a1          83 ADVNAVVWVVDLRHPPTPED-ELVARALK-PLVGKVPILLVGNKLDAAKYP---EEAMKAYHELLPEAEPRMLSALDERQ  157 (178)
T ss_dssp             SSCSEEEEEEETTSCCCHHH-HHHHHHHG-GGTTTSCEEEEEECGGGCSSH---HHHHHHHHHTSTTSEEEECCTTCHHH
T ss_pred             ccccceeeeechhhhhcccc-cchhhhee-ccccchhhhhhhcccccccCH---HHHHHHHHhhcccCceEEEecCCCCC
Confidence            89999999999997644332 33334443 334578999999999986532   233344444444 5889999999999


Q ss_pred             HHHHHHHHHhhcc
Q 030364          160 VNELFYEIGDCTE  172 (178)
Q Consensus       160 i~~~~~~l~~~i~  172 (178)
                      +++++++|.+.+.
T Consensus       158 i~~L~~~i~~~lp  170 (178)
T d1wf3a1         158 VAELKADLLALMP  170 (178)
T ss_dssp             HHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHhCC
Confidence            9999999999884

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.94  E-value=9.5e-27  Score=152.10  Aligned_cols=151  Identities=21%  Similarity=0.254  Sum_probs=109.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCcCCC-CccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhh--------ccchhhhc
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVKGQFFD-FQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYH--------SLAPMYYR   81 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~--------~~~~~~~~   81 (178)
                      +||+++|.+|||||||+|+|++..... ...+..............+  ..+.+||+||.....        .....++.
T Consensus         2 ~kI~lvG~~nvGKSsLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~   79 (161)
T d2gj8a1           2 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDG--MPLHIIDTAGLREASDEVERIGIERAWQEIE   79 (161)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETT--EEEEEEECCCCSCCSSHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceEeecccccccceEeeeeeccC--ceeeeccccccccccccchhHHHHHHHHHHH
Confidence            799999999999999999999876432 2333333334444455555  456699999953222        22345578


Q ss_pred             CCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHH
Q 030364           82 GAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVN  161 (178)
Q Consensus        82 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  161 (178)
                      .+|++++++|..+..+++....|...+... ..+.|+++|+||+|+.......       .+..+.+++++||++|.|++
T Consensus        80 ~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~iilv~NK~Dl~~~~~~~-------~~~~~~~~~~iSAk~~~gi~  151 (161)
T d2gj8a1          80 QADRVLFMVDGTTTDAVDPAEIWPEFIARL-PAKLPITVVRNKADITGETLGM-------SEVNGHALIRLSARTGEGVD  151 (161)
T ss_dssp             TCSEEEEEEETTTCCCCSHHHHCHHHHHHS-CTTCCEEEEEECHHHHCCCCEE-------EEETTEEEEECCTTTCTTHH
T ss_pred             hccccceeeccccccchhhhhhhhhhhhhc-ccccceeeccchhhhhhhHHHH-------HHhCCCcEEEEECCCCCCHH
Confidence            999999999999887776666554444443 4578999999999986533221       12345799999999999999


Q ss_pred             HHHHHHHhhc
Q 030364          162 ELFYEIGDCT  171 (178)
Q Consensus       162 ~~~~~l~~~i  171 (178)
                      +++++|.+.+
T Consensus       152 ~L~~~l~~~l  161 (161)
T d2gj8a1         152 VLRNHLKQSM  161 (161)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHhhC
Confidence            9999999875

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.94  E-value=7e-28  Score=161.99  Aligned_cols=155  Identities=21%  Similarity=0.226  Sum_probs=113.0

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEE
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVV   88 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~   88 (178)
                      +++||+++|..|||||||+++|..+.+++.+.       ....+..  ..+.+++||++|++.+...+..+++.++++++
T Consensus         1 ~e~KivllG~~~vGKTsl~~r~~~~~~~t~~~-------~~~~~~~--~~~~~~i~D~~Gq~~~~~~~~~~~~~~~~~i~   71 (195)
T d1svsa1           1 REVKLLLLGAGESGKSTIVKQMKIIHEAGTGI-------VETHFTF--KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIF   71 (195)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHSCCCSE-------EEEEEEE--TTEEEEEEEECCSGGGGGGGGGGCTTCSEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCCCCccE-------EEEEEEe--eeeeeeeeccccccccccchhhcccCCceeee
Confidence            47899999999999999999998877654322       1222333  34678899999999999999999999999999


Q ss_pred             EEECCCHhHH-----------HHHHHHHHHHHHhCCCCceEEEEEeCCCCcccc---------------ccCHHHH----
Q 030364           89 VYDITSMDSF-----------ERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR---------------KVKNEEG----  138 (178)
Q Consensus        89 v~d~~~~~s~-----------~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~---------------~~~~~~~----  138 (178)
                      |+|.++.+++           +....|...+........|+++++||+|+....               .....+.    
T Consensus        72 v~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~lv~Nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (195)
T d1svsa1          72 CVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYI  151 (195)
T ss_dssp             EEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSHHHHHHHH
T ss_pred             EEeecccchHHHHhhhhHHHHHHHHHHHHHhcccccCCCCEEEEeccchhhhhhccchHHHHHhhhhcCcccHHHHHHHH
Confidence            9999987765           233344444544556789999999999963211               1111111    


Q ss_pred             -HHHHHH------cCCeEEEEeCCCCCCHHHHHHHHHhhcc
Q 030364          139 -ELYAQE------NGLSFLETSAKSAHNVNELFYEIGDCTE  172 (178)
Q Consensus       139 -~~~~~~------~~~~~~~~Sa~~~~~i~~~~~~l~~~i~  172 (178)
                       ..+...      ..+.+++|||++|.||+++|+.+.+.|.
T Consensus       152 ~~~f~~~~~~~~~~~~~~~~tSA~~~~nv~~~F~~v~~~il  192 (195)
T d1svsa1         152 QCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVII  192 (195)
T ss_dssp             HHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcccCCCcceeEEEEeECCHhHHHHHHHHHHHHH
Confidence             111111      2356789999999999999999988764

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.94  E-value=1.7e-25  Score=148.94  Aligned_cols=159  Identities=18%  Similarity=0.215  Sum_probs=113.7

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEE
Q 030364            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA   86 (178)
Q Consensus         7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~   86 (178)
                      .++..||+++|.+|||||||+++|.++.+.. ..++.+.+.  ..+..++  ..+.+||+.+...+...+..++...+++
T Consensus        10 ~~k~~kI~lvG~~~vGKTsLl~~l~~~~~~~-~~~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (186)
T d1f6ba_          10 YKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQ-HVPTLHPTS--EELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGI   84 (186)
T ss_dssp             TTCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSC--EEEEETT--EEEEEEEECC----CCGGGGGGGGCSEE
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHhCCCCcc-eecccccce--eEEEecc--cccccccccchhhhhhHHhhhhccccee
Confidence            4568999999999999999999999887654 333333332  2334455  3566999999999999999999999999


Q ss_pred             EEEEECCCHhHHHHHHHHHHHHHH-hCCCCceEEEEEeCCCCccccccCHHHHHHHHH-----------------HcCCe
Q 030364           87 VVVYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQ-----------------ENGLS  148 (178)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~-~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~-----------------~~~~~  148 (178)
                      ++++|.++...+.....++..... ....+.|+++++||.|++....  ..+......                 ..+++
T Consensus        85 ~~~~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~li~~~K~D~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (186)
T d1f6ba_          85 VFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAIS--EERLREMFGLYGQTTGKGSVSLKELNARPLE  162 (186)
T ss_dssp             EEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCC--HHHHHHHHTCTTTCCCSSCCCTTTCCSCCEE
T ss_pred             eeeeeccCccchHHHHHHHHHhhcccccCCCceEEEEeccCccccCC--HHHHHHHHhhcccchhhhhhhHHHhhcCCCE
Confidence            999999999888887655544443 3457899999999999865332  233222221                 12347


Q ss_pred             EEEEeCCCCCCHHHHHHHHHhhcc
Q 030364          149 FLETSAKSAHNVNELFYEIGDCTE  172 (178)
Q Consensus       149 ~~~~Sa~~~~~i~~~~~~l~~~i~  172 (178)
                      +++|||++|+|++|+|+||++++.
T Consensus       163 ~~~~SA~tg~Gi~e~~~~l~~~i~  186 (186)
T d1f6ba_         163 VFMCSVLKRQGYGEGFRWMAQYID  186 (186)
T ss_dssp             EEECBTTTTBSHHHHHHHHHTTCC
T ss_pred             EEEEeCCCCCCHHHHHHHHHHhhC
Confidence            999999999999999999998863

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.93  E-value=2.4e-25  Score=147.93  Aligned_cols=159  Identities=18%  Similarity=0.070  Sum_probs=104.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhh----hc---cchhhhcCCc
Q 030364           12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERY----HS---LAPMYYRGAA   84 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~----~~---~~~~~~~~~d   84 (178)
                      +|+++|.+|||||||+|+|++........+..+....... ........+.+||+||....    ..   .....+..++
T Consensus         3 ~VaivG~~nvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~   81 (180)
T d1udxa2           3 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGV-VEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTR   81 (180)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEE-EECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCceeccCCCceeeeece-eeecCCCeEEEcCCCeeecCchHHHHHHHHHHHHHHhhh
Confidence            5899999999999999999876543222222222222222 22222346779999995321    11   1224467899


Q ss_pred             EEEEEEECCCH--hHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHH
Q 030364           85 AAVVVYDITSM--DSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNE  162 (178)
Q Consensus        85 ~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  162 (178)
                      ++++++|....  ++......++...... ..+.|+++|+||+|+......  ++..+.....+.+++.+||++|.|+++
T Consensus        82 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~p~iiv~NK~D~~~~~~~--~~~~~~~~~~~~~~~~iSA~tg~gid~  158 (180)
T d1udxa2          82 VLLYVLDAADEPLKTLETLRKEVGAYDPA-LLRRPSLVALNKVDLLEEEAV--KALADALAREGLAVLPVSALTGAGLPA  158 (180)
T ss_dssp             EEEEEEETTSCHHHHHHHHHHHHHHHCHH-HHHSCEEEEEECCTTSCHHHH--HHHHHHHHTTTSCEEECCTTTCTTHHH
T ss_pred             hhhhhcccccccccchhhhhhhhhccccc-cchhhhhhhhhhhhhhhHHHH--HHHHHHHHhcCCeEEEEEcCCCCCHHH
Confidence            99999998753  2333333333222111 235789999999999765433  233444455788999999999999999


Q ss_pred             HHHHHHhhcccc
Q 030364          163 LFYEIGDCTECF  174 (178)
Q Consensus       163 ~~~~l~~~i~~~  174 (178)
                      +++.|.+.+...
T Consensus       159 L~~~i~~~l~~~  170 (180)
T d1udxa2         159 LKEALHALVRST  170 (180)
T ss_dssp             HHHHHHHHHHTS
T ss_pred             HHHHHHHHHhhc
Confidence            999998887654

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.93  E-value=3.9e-25  Score=146.78  Aligned_cols=161  Identities=17%  Similarity=0.117  Sum_probs=106.9

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCcee-----eeEE--EEEEEeCCeEEEEEEEeCCCchhhhccchhhh
Q 030364            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIG-----AAFF--TQVLSLNEVTIKFDIWDTAGQERYHSLAPMYY   80 (178)
Q Consensus         8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~-----~~~~--~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~   80 (178)
                      .+.++|+++|++|+|||||+|+|++.........+..     .+..  ......++  ..+.++|+||+..+.......+
T Consensus         3 ~k~inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~l   80 (179)
T d1wb1a4           3 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVSAA   80 (179)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHHHT
T ss_pred             CCCEEEEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeeccccccccccCC--ccccccccccccccccchhhhh
Confidence            4678999999999999999999996432221111111     1111  11112233  5677999999999988888889


Q ss_pred             cCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCH--HHHHHHHHH----cCCeEEEEeC
Q 030364           81 RGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKN--EEGELYAQE----NGLSFLETSA  154 (178)
Q Consensus        81 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~--~~~~~~~~~----~~~~~~~~Sa  154 (178)
                      ..+|++++++|++++..... ...+..+..   .+.|+++|+||+|+........  +....+...    .+.+++++||
T Consensus        81 ~~~d~~ilv~d~~~g~~~~~-~~~~~~~~~---~~~p~iiv~NKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~iSA  156 (179)
T d1wb1a4          81 DIIDLALIVVDAKEGPKTQT-GEHMLILDH---FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISA  156 (179)
T ss_dssp             TSCCEEEEEEETTTCSCHHH-HHHHHHHHH---TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCT
T ss_pred             hhccccccccccccccchhh-hhhhhhhhh---cCCcceeccccccccCHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEc
Confidence            99999999999997543222 223333333   3788999999999876443211  112222222    2368999999


Q ss_pred             CCCCCHHHHHHHHHhhcccc
Q 030364          155 KSAHNVNELFYEIGDCTECF  174 (178)
Q Consensus       155 ~~~~~i~~~~~~l~~~i~~~  174 (178)
                      ++|+|++++++.|.+.+...
T Consensus       157 ~~g~gi~eL~~~I~~~l~~~  176 (179)
T d1wb1a4         157 KTGFGVDELKNLIITTLNNA  176 (179)
T ss_dssp             TTCTTHHHHHHHHHHHHHHS
T ss_pred             cCCcCHHHHHHHHHhcCCcc
Confidence            99999999999999887643

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.92  E-value=2.1e-25  Score=147.06  Aligned_cols=157  Identities=18%  Similarity=0.090  Sum_probs=99.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchh---------hhccchhhhcC
Q 030364           12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER---------YHSLAPMYYRG   82 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~---------~~~~~~~~~~~   82 (178)
                      +|+++|.+|||||||+++|++..... .....+.+.......+......+.+||++|...         +......++..
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~   80 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKKKAI-VEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIRE   80 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC---------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCcce-ecccCceeeccccccccccccccccccccceeeeecccccccccccccccccc
Confidence            68999999999999999999755421 112222222222222333335677999998421         22233445788


Q ss_pred             CcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHH
Q 030364           83 AAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNE  162 (178)
Q Consensus        83 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  162 (178)
                      +|+++++.|.++...... ..++..+...   ++|+++|+||+|+..+..  .+...++.+....+++++||++|.|+++
T Consensus        81 ad~i~~~~~~~~~~~~~~-~~~~~~l~~~---~~pviiv~NK~Dl~~~~~--~~~~~~~~~~~~~~~i~iSAk~g~gid~  154 (171)
T d1mkya1          81 ADLVLFVVDGKRGITKED-ESLADFLRKS---TVDTILVANKAENLREFE--REVKPELYSLGFGEPIPVSAEHNINLDT  154 (171)
T ss_dssp             CSEEEEEEETTTCCCHHH-HHHHHHHHHH---TCCEEEEEESCCSHHHHH--HHTHHHHGGGSSCSCEECBTTTTBSHHH
T ss_pred             CcEEEEeecccccccccc-cccccccccc---cccccccchhhhhhhhhh--hHHHHHHHhcCCCCeEEEecCCCCCHHH
Confidence            999999999886543332 3444555544   678999999999865322  2222333333445789999999999999


Q ss_pred             HHHHHHhhccccc
Q 030364          163 LFYEIGDCTECFS  175 (178)
Q Consensus       163 ~~~~l~~~i~~~~  175 (178)
                      ++++|.+.+.+..
T Consensus       155 L~~~i~~~l~e~~  167 (171)
T d1mkya1         155 MLETIIKKLEEKG  167 (171)
T ss_dssp             HHHHHHHHHHHTT
T ss_pred             HHHHHHHhCCCCC
Confidence            9999999886543

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.91  E-value=2.3e-24  Score=143.80  Aligned_cols=163  Identities=18%  Similarity=0.150  Sum_probs=105.2

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHHhCcCCC-CccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhc-----------
Q 030364            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFD-FQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHS-----------   74 (178)
Q Consensus         7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~-----------   74 (178)
                      ....+||+++|.+|+|||||+|+|++..... ...+.............++.  .+.++|+||......           
T Consensus         5 ~~~~~kV~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~~~d~~g~~~~~~~~~~~~~~~~~   82 (186)
T d1mkya2           5 ITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSN   82 (186)
T ss_dssp             CCSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCC
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHCCCcceeecccccccccceeeeccCCc--eeeeeccCCccccccccccccccchh
Confidence            3447999999999999999999999765421 12222222222333455553  466999999643221           


Q ss_pred             -cchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHH-----cCCe
Q 030364           75 -LAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQE-----NGLS  148 (178)
Q Consensus        75 -~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~  148 (178)
                       .....++.+|++++|+|++.+.... ...+...+..   .+.|+++++||+|+....+....+.......     ...+
T Consensus        83 ~~~~~~~~~~dvii~v~d~~~~~~~~-~~~~~~~~~~---~~~~~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (186)
T d1mkya2          83 YRVVDSIEKADVVVIVLDATQGITRQ-DQRMAGLMER---RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSP  158 (186)
T ss_dssp             HHHHHHHHHCSEEEEEEETTTCCCHH-HHHHHHHHHH---TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSC
T ss_pred             HHHHHHHhcCCEEEEeecccccchhh-HHHHHHHHHH---cCCceeeeccchhhhcchhhhhhhHHHHHHHHhcccCCCe
Confidence             2334467899999999998653322 2333333433   3679999999999865544433333332222     2358


Q ss_pred             EEEEeCCCCCCHHHHHHHHHhhccccc
Q 030364          149 FLETSAKSAHNVNELFYEIGDCTECFS  175 (178)
Q Consensus       149 ~~~~Sa~~~~~i~~~~~~l~~~i~~~~  175 (178)
                      ++.+||++|.|+++++++|.+.++.++
T Consensus       159 i~~vSa~~g~gv~~L~~~i~~~~~~~~  185 (186)
T d1mkya2         159 LIFTSADKGWNIDRMIDAMNLAYASYT  185 (186)
T ss_dssp             EEECBTTTTBSHHHHHHHHHHHHHHHT
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHHHhCC
Confidence            999999999999999999999887664

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.91  E-value=1.5e-25  Score=151.22  Aligned_cols=158  Identities=18%  Similarity=0.230  Sum_probs=107.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEE
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVV   89 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v   89 (178)
                      .+||+++|.+|||||||++++.   +...+.||.|...  ..+..+  .+.+.+||++|++.+...+..+++.+++++++
T Consensus         2 ~iKivllG~~~vGKTsll~r~~---f~~~~~pTiG~~~--~~~~~~--~~~~~~~D~~gq~~~~~~~~~~~~~~~~~~~~   74 (200)
T d1zcba2           2 LVKILLLGAGESGKSTFLKQMR---IIHGQDPTKGIHE--YDFEIK--NVPFKMVDVGGQRSERKRWFECFDSVTSILFL   74 (200)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHH---HHHSCCCCSSEEE--EEEEET--TEEEEEEEECC-------CTTSCTTCCEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHh---cCCCCCCeeeeEE--EEEeee--eeeeeeecccceeeecccccccccccceeEEE
Confidence            5899999999999999999994   4445677777443  334444  46778999999999999999999999999999


Q ss_pred             EECCCHhH----------HHHHHHHHHHHHH-hCCCCceEEEEEeCCCCcccc----------------ccCHHHHHHHH
Q 030364           90 YDITSMDS----------FERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKR----------------KVKNEEGELYA  142 (178)
Q Consensus        90 ~d~~~~~s----------~~~~~~~~~~~~~-~~~~~~~~ivv~nK~D~~~~~----------------~~~~~~~~~~~  142 (178)
                      +|.++..+          ++....++..+.. ....+.|+++++||+|+.+..                .-..+.+.++.
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~  154 (200)
T d1zcba2          75 VSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFL  154 (200)
T ss_dssp             EETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHH
T ss_pred             EEcCCcceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEEeccchhhhhhccccHHHHhCccccCCcchHHHHHHHH
Confidence            99997533          3444444444433 445789999999999974311                01112222222


Q ss_pred             HH-----------cCCeEEEEeCCCCCCHHHHHHHHHhhcccc
Q 030364          143 QE-----------NGLSFLETSAKSAHNVNELFYEIGDCTECF  174 (178)
Q Consensus       143 ~~-----------~~~~~~~~Sa~~~~~i~~~~~~l~~~i~~~  174 (178)
                      ..           ..+.+++|||+++.||+++|+.+.+.|-+-
T Consensus       155 ~~~f~~~~~~~~~~~iy~~~TsA~d~~ni~~vf~~v~d~i~~~  197 (200)
T d1zcba2         155 VECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHD  197 (200)
T ss_dssp             HHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhccCCCCCceEEEEeeeeCcHHHHHHHHHHHHHHHHH
Confidence            21           124667899999999999999988776543

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.91  E-value=6.5e-25  Score=143.11  Aligned_cols=149  Identities=22%  Similarity=0.207  Sum_probs=99.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCcCC-CCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhh---------ccchhhh
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVKGQFF-DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYH---------SLAPMYY   80 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~---------~~~~~~~   80 (178)
                      +||+++|.+|+|||||+|+|++.+.. ....+..+...........+  ..+.+||+||.....         ......+
T Consensus         1 ikI~liG~~n~GKSSLin~l~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~~   78 (160)
T d1xzpa2           1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQEI   78 (160)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeeccccccccceeEEEEeCC--eeEEeccccccccCCccHHHHHHHHHHHHHH
Confidence            68999999999999999999976532 22223333333344445555  456799999942111         1112235


Q ss_pred             cCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCH
Q 030364           81 RGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNV  160 (178)
Q Consensus        81 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  160 (178)
                      ..+|++++|+|++++.......-+ ..+     ...++++++||.|+.+...  .++.. .....+.+++++||++|.|+
T Consensus        79 ~~ad~ii~v~d~~~~~~~~~~~~~-~~~-----~~~~~i~~~~k~d~~~~~~--~~~~~-~~~~~~~~~~~vSA~~g~gi  149 (160)
T d1xzpa2          79 EKADIVLFVLDASSPLDEEDRKIL-ERI-----KNKRYLVVINKVDVVEKIN--EEEIK-NKLGTDRHMVKISALKGEGL  149 (160)
T ss_dssp             HHCSEEEEEEETTSCCCHHHHHHH-HHH-----TTSSEEEEEEECSSCCCCC--HHHHH-HHHTCSTTEEEEEGGGTCCH
T ss_pred             HhCCEEEEEEeCCCCcchhhhhhh-hhc-----ccccceeeeeeccccchhh--hHHHH-HHhCCCCcEEEEECCCCCCH
Confidence            789999999999987655433211 111     3567899999999876432  22222 12234579999999999999


Q ss_pred             HHHHHHHHhh
Q 030364          161 NELFYEIGDC  170 (178)
Q Consensus       161 ~~~~~~l~~~  170 (178)
                      ++++++|.++
T Consensus       150 ~~L~~~I~ke  159 (160)
T d1xzpa2         150 EKLEESIYRE  159 (160)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhc
Confidence            9999999774

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.90  E-value=1.8e-23  Score=139.16  Aligned_cols=150  Identities=18%  Similarity=0.187  Sum_probs=95.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCch---------------hhhccc
Q 030364           12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE---------------RYHSLA   76 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~---------------~~~~~~   76 (178)
                      .|+++|.+|||||||+|+|++.+......+  +++.....+...+    +.+||+||..               .+....
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~~~~~~~~~--g~T~~~~~~~~~~----~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~   75 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGKKVRRGKRP--GVTRKIIEIEWKN----HKIIDMPGFGFMMGLPKEVQERIKDEIVHFI   75 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCCCSSSSST--TCTTSCEEEEETT----EEEEECCCBSCCTTSCHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeCCC--CEeeccccccccc----ceecccCCceeccccccccccccchhhhhhh
Confidence            589999999999999999998765432222  2222222333333    4589999941               111123


Q ss_pred             hhhhcCCcEEEEEEECCCHhHHHHHH----------HHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcC
Q 030364           77 PMYYRGAAAAVVVYDITSMDSFERAK----------KWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENG  146 (178)
Q Consensus        77 ~~~~~~~d~~i~v~d~~~~~s~~~~~----------~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~  146 (178)
                      ...++.+|++++|+|+.++.......          .+++.+..   .+.|+++|+||+|+....+   .....+....+
T Consensus        76 ~~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~---~~~p~iiv~NK~D~~~~~~---~~~~~~~~~~~  149 (184)
T d2cxxa1          76 EDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRE---LDIPTIVAVNKLDKIKNVQ---EVINFLAEKFE  149 (184)
T ss_dssp             HHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHH---TTCCEEEEEECGGGCSCHH---HHHHHHHHHHT
T ss_pred             hhcccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHH---cCCCEEEEEeeeehhhhHH---HHHHHHHHHhc
Confidence            34467899999999998653322211          12222322   4789999999999754332   11222222222


Q ss_pred             -------CeEEEEeCCCCCCHHHHHHHHHhhccc
Q 030364          147 -------LSFLETSAKSAHNVNELFYEIGDCTEC  173 (178)
Q Consensus       147 -------~~~~~~Sa~~~~~i~~~~~~l~~~i~~  173 (178)
                             ..++++||++|.|+++++++|.+.+.+
T Consensus       150 ~~~~~~~~~~~~vSA~~g~gi~~L~~~i~~~l~e  183 (184)
T d2cxxa1         150 VPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRE  183 (184)
T ss_dssp             CCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             ccccccCCeEEEEECCCCCCHHHHHHHHHHHccC
Confidence                   258999999999999999999987753

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.90  E-value=1.8e-22  Score=136.70  Aligned_cols=118  Identities=20%  Similarity=0.296  Sum_probs=86.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhh-ccchhhhcCCcEEEEEE
Q 030364           12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYH-SLAPMYYRGAAAAVVVY   90 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~-~~~~~~~~~~d~~i~v~   90 (178)
                      +|+++|++|||||||+++|+++.+... .++.+.+...... .....+.+.+||++|++.+. ..+..++..++++++|+
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~~~~~~-~~t~~~~~~~~~~-~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~i~v~   79 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTGQYRDT-QTSITDSSAIYKV-NNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVV   79 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCB-CCCCSCEEEEEEC-SSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCcc-cCCeeEEEEEEEE-eeeeeeeeeeeeccccccccchhhhhhhhhccccceEE
Confidence            799999999999999999999887653 3455444433322 24456788899999998875 46678889999999999


Q ss_pred             ECCCHhHH-HHHHHHHHH-HHHh--CCCCceEEEEEeCCCCcccc
Q 030364           91 DITSMDSF-ERAKKWVQE-LQRQ--GNPNLIMFLVANKVDLEEKR  131 (178)
Q Consensus        91 d~~~~~s~-~~~~~~~~~-~~~~--~~~~~~~ivv~nK~D~~~~~  131 (178)
                      |+++..++ .....++.. +...  .....|++|++||+|++.+.
T Consensus        80 D~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~a~  124 (207)
T d2fh5b1          80 DSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAK  124 (207)
T ss_dssp             ETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCC
T ss_pred             EcccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCCCC
Confidence            99997653 444444433 3322  23568999999999997644

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=99.89  E-value=1.5e-22  Score=135.85  Aligned_cols=163  Identities=18%  Similarity=0.179  Sum_probs=107.2

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCc---cC--c--eeeeEEEEEE-----------------EeCCeEEEEE
Q 030364            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQ---ES--T--IGAAFFTQVL-----------------SLNEVTIKFD   62 (178)
Q Consensus         7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~---~~--~--~~~~~~~~~~-----------------~~~~~~~~~~   62 (178)
                      +++.++|+++|+.++|||||+++|++.......   ..  +  .+........                 ........+.
T Consensus         2 ~~~~inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (195)
T d1kk1a3           2 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS   81 (195)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred             CCCcEEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeEe
Confidence            467899999999999999999999864321110   00  0  1111100000                 0112346688


Q ss_pred             EEeCCCchhhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccC--HHHHHH
Q 030364           63 IWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVK--NEEGEL  140 (178)
Q Consensus        63 i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~--~~~~~~  140 (178)
                      ++|+||+..|.......+..+|++++++|+.++.........+..+....  ..+++++.||+|+.+.....  ......
T Consensus        82 ~iDtPGh~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~~--~~~iiv~inK~D~~d~~~~~~~~~~~~~  159 (195)
T d1kk1a3          82 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIG--QKNIIIAQNKIELVDKEKALENYRQIKE  159 (195)
T ss_dssp             EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHT--CCCEEEEEECGGGSCHHHHHHHHHHHHH
T ss_pred             eeccchhhhhhHHhhcccccccccccccchhhhhhhhhhHHHHHHHHHhc--CccceeeeecccchhhHHHHHHHHHHHH
Confidence            99999999999888888899999999999998532233333344444432  24578889999986643221  122233


Q ss_pred             HHHHc---CCeEEEEeCCCCCCHHHHHHHHHhhc
Q 030364          141 YAQEN---GLSFLETSAKSAHNVNELFYEIGDCT  171 (178)
Q Consensus       141 ~~~~~---~~~~~~~Sa~~~~~i~~~~~~l~~~i  171 (178)
                      +....   .++++++||++|+|++++++.|.+.+
T Consensus       160 ~~~~~~~~~~~iIpiSA~~G~ni~~Ll~~I~~~i  193 (195)
T d1kk1a3         160 FIEGTVAENAPIIPISALHGANIDVLVKAIEDFI  193 (195)
T ss_dssp             HHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             HhccccCCCCeEEEEECCCCCCHHHHHHHHHHHC
Confidence            33322   36899999999999999999998765

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.89  E-value=6.1e-23  Score=137.85  Aligned_cols=155  Identities=15%  Similarity=0.158  Sum_probs=93.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchh----------h---hccc
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER----------Y---HSLA   76 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~----------~---~~~~   76 (178)
                      ..+|+|+|.+|||||||+|+|++.+.........+.+..........   .+.+.|+++...          .   ....
T Consensus        23 ~~~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~   99 (195)
T d1svia_          23 LPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMIETY   99 (195)
T ss_dssp             CCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHhcCCCceEEeecccceeeecccccccc---cceEEEEEeeccccccccccchhhhHHhhh
Confidence            45899999999999999999998654333333333333233333333   233566655211          1   1122


Q ss_pred             hhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHH----HcCCeEEEE
Q 030364           77 PMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQ----ENGLSFLET  152 (178)
Q Consensus        77 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~----~~~~~~~~~  152 (178)
                      ...+..+|++++++|++++... ....+++.+...   +.|+++|+||+|+....... +....+.+    ....+++.+
T Consensus       100 ~~~~~~~~~vi~viD~~~~~~~-~~~~~~~~l~~~---~~piivv~NK~D~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~  174 (195)
T d1svia_         100 ITTREELKAVVQIVDLRHAPSN-DDVQMYEFLKYY---GIPVIVIATKADKIPKGKWD-KHAKVVRQTLNIDPEDELILF  174 (195)
T ss_dssp             HHHCTTEEEEEEEEETTSCCCH-HHHHHHHHHHHT---TCCEEEEEECGGGSCGGGHH-HHHHHHHHHHTCCTTSEEEEC
T ss_pred             hccccchhhhhhhhhccccccc-cccccccccccc---cCcceechhhccccCHHHHH-HHHHHHHHHhcccCCCCEEEE
Confidence            2344567999999999864321 123344444443   67899999999986544332 22222222    244689999


Q ss_pred             eCCCCCCHHHHHHHHHhhcc
Q 030364          153 SAKSAHNVNELFYEIGDCTE  172 (178)
Q Consensus       153 Sa~~~~~i~~~~~~l~~~i~  172 (178)
                      ||++|.|+++++++|.+.+.
T Consensus       175 SA~~~~gi~el~~~i~~~l~  194 (195)
T d1svia_         175 SSETKKGKDEAWGAIKKMIN  194 (195)
T ss_dssp             CTTTCTTHHHHHHHHHHHHT
T ss_pred             eCCCCCCHHHHHHHHHHHhC
Confidence            99999999999999998875

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.89  E-value=1.8e-23  Score=143.51  Aligned_cols=157  Identities=19%  Similarity=0.169  Sum_probs=101.0

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCcCCCCccCceee--eEEEEE--------------EEeCCeEEEEEEEeCCCchhhhccc
Q 030364           13 LVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGA--AFFTQV--------------LSLNEVTIKFDIWDTAGQERYHSLA   76 (178)
Q Consensus        13 i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~--~~~~~~--------------~~~~~~~~~~~i~d~~g~~~~~~~~   76 (178)
                      |+|+|++++|||||+++|++.............  ......              ..+......+.++||||+..|....
T Consensus         8 IaIiGh~d~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~~f~~~~   87 (227)
T d1g7sa4           8 VSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTTLR   87 (227)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCTTSB
T ss_pred             EEEEeCCCccHHHHHHHHHhhcchheecCceeeeccccccccccccccccccccceeecccccccccccccceecccccc
Confidence            999999999999999999875322111111100  000000              0122334567899999999998888


Q ss_pred             hhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHH--------------------
Q 030364           77 PMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNE--------------------  136 (178)
Q Consensus        77 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~--------------------  136 (178)
                      ...+..+|++|+|+|+.++-.... ...+..+..   .+.|+++++||+|+.........                    
T Consensus        88 ~~~~~~~D~~ilVvda~~g~~~~~-~~~~~~~~~---~~~p~iivlNK~D~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  163 (227)
T d1g7sa4          88 KRGGALADLAILIVDINEGFKPQT-QEALNILRM---YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDT  163 (227)
T ss_dssp             CSSSBSCSEEEEEEETTTCCCHHH-HHHHHHHHH---TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHHHHH
T ss_pred             hhcccccceEEEEEecccCcccch-hHHHHHhhc---CCCeEEEEEECccCCCchhhhhhHHHHHhhhcchHHHHHHHHH
Confidence            888999999999999987432222 233344443   37899999999998653321110                    


Q ss_pred             HH----HHHHHH--------------cCCeEEEEeCCCCCCHHHHHHHHHhhccc
Q 030364          137 EG----ELYAQE--------------NGLSFLETSAKSAHNVNELFYEIGDCTEC  173 (178)
Q Consensus       137 ~~----~~~~~~--------------~~~~~~~~Sa~~~~~i~~~~~~l~~~i~~  173 (178)
                      ..    ..+...              ..++++++||++|.|++++++.|....++
T Consensus       164 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~pvSa~~G~gid~Ll~~l~~l~~~  218 (227)
T d1g7sa4         164 KVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQ  218 (227)
T ss_dssp             HHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhhhhhcccccccCCCeEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence            00    001100              11478999999999999999998776543

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.89  E-value=1.9e-22  Score=136.33  Aligned_cols=168  Identities=14%  Similarity=0.142  Sum_probs=108.2

Q ss_pred             cCCCCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCc---cCce--eeeEEEEEEEe------------------------
Q 030364            4 TSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQ---ESTI--GAAFFTQVLSL------------------------   54 (178)
Q Consensus         4 ~~~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~---~~~~--~~~~~~~~~~~------------------------   54 (178)
                      ++..++.++|+++|+.++|||||+++|++.......   ....  ...........                        
T Consensus         2 ~~~~~p~ini~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (205)
T d2qn6a3           2 WPKVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDE   81 (205)
T ss_dssp             CCCCCCCEEEEEECSTTSSHHHHHHHHHSCCC--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSC
T ss_pred             CCCCCCCeEEEEEEccCCcHHHHHHHHHhhhchhhHHHHHhhcccccchhhhhhhhhhhhhhhheeeecccceeeeeecc
Confidence            455677899999999999999999999863211000   0000  00000000000                        


Q ss_pred             CCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccC
Q 030364           55 NEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVK  134 (178)
Q Consensus        55 ~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~  134 (178)
                      ......+.++|+||+..|.......+..+|++|+|+|+.++-.....+..+..+...  .-.|++|++||+|+.+.....
T Consensus        82 ~~~~r~~~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~~~~--~i~~iIV~vNK~Dl~~~~~~~  159 (205)
T d2qn6a3          82 PKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII--GVKNLIIVQNKVDVVSKEEAL  159 (205)
T ss_dssp             CEEEEEEEEEECSCHHHHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHHHHT--TCCCEEEEEECGGGSCHHHHH
T ss_pred             ccceEEEEEeccchHHHHHhhhhcceeccccccccccccccccchhHHHHHHHHHHc--CCceeeeccccCCCccchHHH
Confidence            112346889999999999888888889999999999999753222223333334333  234788899999997644321


Q ss_pred             H--HHHHHHHHHc---CCeEEEEeCCCCCCHHHHHHHHHhhccc
Q 030364          135 N--EEGELYAQEN---GLSFLETSAKSAHNVNELFYEIGDCTEC  173 (178)
Q Consensus       135 ~--~~~~~~~~~~---~~~~~~~Sa~~~~~i~~~~~~l~~~i~~  173 (178)
                      .  .....+....   +++++++||++|.|++++++.|.+.+..
T Consensus       160 ~~~~~~~~~l~~~~~~~~p~ipiSA~~g~nI~~L~e~i~~~ip~  203 (205)
T d2qn6a3         160 SQYRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIKT  203 (205)
T ss_dssp             HHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHhccccCCCCeEEEEeCCCCCChHHHHHHHHhhCCC
Confidence            1  1122222222   3689999999999999999999887654

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.89  E-value=3.2e-24  Score=143.06  Aligned_cols=157  Identities=15%  Similarity=0.107  Sum_probs=98.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhcc-------chhhhcCCc
Q 030364           12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSL-------APMYYRGAA   84 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~-------~~~~~~~~d   84 (178)
                      +|+++|.+|||||||+|+|++........+..+.........+.+ ...+.+||+||.......       ....+..++
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~~~~~~~~~~~~T~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~   81 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDD-GRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTR   81 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSS-SCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCC
T ss_pred             eEEEECCCCCCHHHHHHHHhCCCCceecCCCceEeeeeceeEecC-CcEEEEecCCCcccCchHHHHHHHHHHHHHHHhh
Confidence            689999999999999999987654322222222222222333322 125679999996332221       112245688


Q ss_pred             EEEEEEECCCHhHH---HHHHHHH--HHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHH--cCCeEEEEeCCCC
Q 030364           85 AAVVVYDITSMDSF---ERAKKWV--QELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQE--NGLSFLETSAKSA  157 (178)
Q Consensus        85 ~~i~v~d~~~~~s~---~~~~~~~--~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~  157 (178)
                      .++++++....+..   +....+.  .........++|+++|+||+|+.+...    ....+.+.  .+.+++.+||++|
T Consensus        82 ~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~~~~----~~~~~~~~~~~~~~v~~iSA~~g  157 (185)
T d1lnza2          82 VIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAE----NLEAFKEKLTDDYPVFPISAVTR  157 (185)
T ss_dssp             EEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHH----HHHHHHHHCCSCCCBCCCSSCCS
T ss_pred             hhhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHhHHH----HHHHHHHHhccCCcEEEEECCCC
Confidence            88888887643322   2111111  111122235789999999999875432    22233333  3679999999999


Q ss_pred             CCHHHHHHHHHhhccc
Q 030364          158 HNVNELFYEIGDCTEC  173 (178)
Q Consensus       158 ~~i~~~~~~l~~~i~~  173 (178)
                      .|+++++++|.+.+..
T Consensus       158 ~Gi~~L~~~i~~~L~~  173 (185)
T d1lnza2         158 EGLRELLFEVANQLEN  173 (185)
T ss_dssp             STTHHHHHHHHHHHTS
T ss_pred             CCHHHHHHHHHHhhhh
Confidence            9999999999998864

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.88  E-value=1.3e-22  Score=138.74  Aligned_cols=158  Identities=17%  Similarity=0.220  Sum_probs=111.7

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEE
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVV   88 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~   88 (178)
                      ...||+++|+.|||||||++++..+.+    .||.|..  ...+.+++  +.+.+||++|++.++..|..+++.++++++
T Consensus         5 ~~~KilllG~~~vGKTsll~~~~~~~~----~pTiG~~--~~~~~~~~--~~~~~~D~~Gq~~~r~~w~~~~~~~~~ii~   76 (221)
T d1azta2           5 ATHRLLLLGAGESGKSTIVKQMRILHV----VLTSGIF--ETKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIF   76 (221)
T ss_dssp             HSEEEEEECSTTSSHHHHHHHHHHHHC----CCCCSCE--EEEEEETT--EEEEEEECCCSTTTTTGGGGGCTTCSEEEE
T ss_pred             hcCEEEEECCCCCCHHHHHHHHhcCCc----CCCCCeE--EEEEEECc--EEEEEEecCccceeccchhhhcccccceEE
Confidence            468999999999999999999987654    3566643  33445555  678899999999999999999999999999


Q ss_pred             EEECCCHh----------HHHHHHHHHHH-HHHhCCCCceEEEEEeCCCCccccc----c--------------------
Q 030364           89 VYDITSMD----------SFERAKKWVQE-LQRQGNPNLIMFLVANKVDLEEKRK----V--------------------  133 (178)
Q Consensus        89 v~d~~~~~----------s~~~~~~~~~~-~~~~~~~~~~~ivv~nK~D~~~~~~----~--------------------  133 (178)
                      ++|.++.+          .+.+...++.. +......+.|++|++||+|+.+...    .                    
T Consensus        77 v~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK~Dl~~~k~~~~~~~~~~~f~~~~~~~~~~~~~~  156 (221)
T d1azta2          77 VVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATP  156 (221)
T ss_dssp             EEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHHHHHHCSSCHHHHCGGGGGCCCCTTCCC
T ss_pred             EEEccccccccccccchHHHHHHHHHHHHHhcChhhCCCcEEEEechhhhhhhhhccCcccHHHhCccccccCCcccccc
Confidence            99998542          23333333333 4334457899999999999853211    0                    


Q ss_pred             ------CHHHHH-----HHHHH--------cCCeEEEEeCCCCCCHHHHHHHHHhhcccc
Q 030364          134 ------KNEEGE-----LYAQE--------NGLSFLETSAKSAHNVNELFYEIGDCTECF  174 (178)
Q Consensus       134 ------~~~~~~-----~~~~~--------~~~~~~~~Sa~~~~~i~~~~~~l~~~i~~~  174 (178)
                            ....+.     .+.+.        ..+....|||.++.+|+.+|+.+.+.|.+-
T Consensus       157 ~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~y~h~T~A~Dt~ni~~vf~~v~d~I~~~  216 (221)
T d1azta2         157 EPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQRM  216 (221)
T ss_dssp             CTTCCHHHHHHHHHHHHHHHHHHTSSCTTSCCEEEEECCTTCHHHHHHHHHTTHHHHHHH
T ss_pred             cCCCchhHHHHHHHHHHHHHHHhccCCCCCCceeeeecceeccHHHHHHHHHHHHHHHHH
Confidence                  011122     22221        123457899999999999998876665543

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=99.86  E-value=4.1e-22  Score=133.30  Aligned_cols=160  Identities=15%  Similarity=0.124  Sum_probs=108.2

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHHhC----------------cCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchh
Q 030364            8 NIQVKLVLLGDMGTGKTSLVLRFVKG----------------QFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER   71 (178)
Q Consensus         8 ~~~~~i~v~G~~~~GKStl~~~l~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~   71 (178)
                      ++.++|+++|+.++|||||+++|+..                ....  +...+.+.......+......+.++|+||+..
T Consensus         1 kp~ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~--Er~rgiTi~~~~~~~~~~~~~~~~iDtPGh~~   78 (196)
T d1d2ea3           1 KPHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPE--ERARGITINAAHVEYSTAARHYAHTDCPGHAD   78 (196)
T ss_dssp             CCEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCE--EEETTEEEECEEEEEECSSCEEEEEECSSHHH
T ss_pred             CCCcEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchh--hcCCCccCCcceEEEEeceeeEEeecCcchHH
Confidence            36899999999999999999999751                1111  12222333333344444446677999999999


Q ss_pred             hhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccC---HHHHHHHHHHcC--
Q 030364           72 YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVK---NEEGELYAQENG--  146 (178)
Q Consensus        72 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~---~~~~~~~~~~~~--  146 (178)
                      |.......+..+|++++|+|+.++-. ++..+.+..+...  ...|++|++||+|+....+..   ..+...+....+  
T Consensus        79 f~~~~~~~~~~aD~allVVda~~G~~-~QT~~~~~~a~~~--~~~~iIv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~  155 (196)
T d1d2ea3          79 YVKNMITGTAPLDGCILVVAANDGPM-PQTREHLLLARQI--GVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYK  155 (196)
T ss_dssp             HHHHHHHTSSCCSEEEEEEETTTCSC-HHHHHHHHHHHHT--TCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHhhcCeEEEEEEcCCCCc-hhHHHHHHHHHHh--cCCcEEEEEecccccccHHHHHHHHHHHHHHHHHhCCC
Confidence            99888888899999999999997532 2233334444443  235688899999986432211   112333333333  


Q ss_pred             ---CeEEEEeCCCC----------CCHHHHHHHHHhhcc
Q 030364          147 ---LSFLETSAKSA----------HNVNELFYEIGDCTE  172 (178)
Q Consensus       147 ---~~~~~~Sa~~~----------~~i~~~~~~l~~~i~  172 (178)
                         ++++.+||++|          .++.++++.|.+.+-
T Consensus       156 ~~~~pii~iSa~~g~~~~~~~~~~~~~~~Lldai~~~iP  194 (196)
T d1d2ea3         156 GEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP  194 (196)
T ss_dssp             TTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred             cccCEEEEEEccccccccCcccccCCHHHHHHHHHhhCC
Confidence               68999999988          588999988877653

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.83  E-value=1.3e-19  Score=119.63  Aligned_cols=157  Identities=14%  Similarity=0.100  Sum_probs=100.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCcCCCC-ccCceeeeEEEEEEEeCCeEEEEEEEeCCCchh---------hhccchhh
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDF-QESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER---------YHSLAPMY   79 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~---------~~~~~~~~   79 (178)
                      --.|+++|.+|||||||+|+|++.+.... ..+.............+..  .+..+|.+|...         ........
T Consensus         5 ~~~I~iiG~~nvGKSSLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (179)
T d1egaa1           5 CGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAY--QAIYVDTPGLHMEEKRAINRLMNKAASSS   82 (179)
T ss_dssp             EEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTE--EEEEESSSSCCHHHHHHHHHHHTCCTTSC
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCCCceeeccCCCceEEEEEeeeecCCc--eeEeecCCCceecchhhhhhhhhhccccc
Confidence            34689999999999999999998654322 2222222222333333443  344678877421         11222334


Q ss_pred             hcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcC-CeEEEEeCCCCC
Q 030364           80 YRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENG-LSFLETSAKSAH  158 (178)
Q Consensus        80 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~  158 (178)
                      ...+++++++.|..+....  ...+...+.   ....|.++++||.|..............+...++ .+++++||++|.
T Consensus        83 ~~~~~~~l~~~d~~~~~~~--~~~~~~~l~---~~~~~~i~v~~k~d~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g~  157 (179)
T d1egaa1          83 IGDVELVIFVVEGTRWTPD--DEMVLNKLR---EGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGL  157 (179)
T ss_dssp             CCCEEEEEEEEETTCCCHH--HHHHHHHHH---SSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTT
T ss_pred             hhhcceeEEEEecCccchh--HHHHHHHhh---hccCceeeeeeeeeccchhhhhhhHhhhhhhhcCCCCEEEEeCcCCC
Confidence            4567888889988763322  122223333   2456789999999986654433344455555555 589999999999


Q ss_pred             CHHHHHHHHHhhccc
Q 030364          159 NVNELFYEIGDCTEC  173 (178)
Q Consensus       159 ~i~~~~~~l~~~i~~  173 (178)
                      |+++++++|.+.+.+
T Consensus       158 gi~~L~~~i~~~lpe  172 (179)
T d1egaa1         158 NVDTIAAIVRKHLPE  172 (179)
T ss_dssp             THHHHHHHHHTTCCB
T ss_pred             CHHHHHHHHHHhCCC
Confidence            999999999998854

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.82  E-value=1.7e-20  Score=126.29  Aligned_cols=142  Identities=13%  Similarity=0.104  Sum_probs=91.6

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHHhCc--------C---------CCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCch
Q 030364            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQ--------F---------FDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE   70 (178)
Q Consensus         8 ~~~~~i~v~G~~~~GKStl~~~l~~~~--------~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~   70 (178)
                      ++.++|+++|++++|||||+++|+...        .         .++.....+.+.....+.+++  .++.|+|+||+.
T Consensus         1 k~~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~~--~~i~iiDtPGh~   78 (204)
T d2c78a3           1 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAK--RHYSHVDCPGHA   78 (204)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSS--CEEEEEECCCSG
T ss_pred             CCCeEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEeCC--eEEEEEeCCCch
Confidence            367999999999999999999997420        0         000111122223333444444  566799999999


Q ss_pred             hhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCce-EEEEEeCCCCccccccC---HHHHHHHHHHcC
Q 030364           71 RYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLI-MFLVANKVDLEEKRKVK---NEEGELYAQENG  146 (178)
Q Consensus        71 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-~ivv~nK~D~~~~~~~~---~~~~~~~~~~~~  146 (178)
                      .|.......+..+|++|+|+|+.++-.... .+.+..+...   +.| ++|++||+|+.+..+.-   ..+...+....+
T Consensus        79 df~~~~~~~~~~aD~avlVvda~~Gv~~qt-~~~~~~~~~~---gi~~iiv~iNK~D~~~~~~~~~~~~~~i~~~l~~~~  154 (204)
T d2c78a3          79 DYIKNMITGAAQMDGAILVVSAADGPMPQT-REHILLARQV---GVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYE  154 (204)
T ss_dssp             GGHHHHHHHHTTCSSEEEEEETTTCCCHHH-HHHHHHHHHT---TCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTT
T ss_pred             hhHHHHHHHHHHCCEEEEEEECCCCCcHHH-HHHHHHHHHc---CCCeEEEEEEecccCCCHHHHHHHHHHHHHHHHhcC
Confidence            999988889999999999999998654433 3333444444   454 67789999985432211   122233333332


Q ss_pred             -----CeEEEEeCC
Q 030364          147 -----LSFLETSAK  155 (178)
Q Consensus       147 -----~~~~~~Sa~  155 (178)
                           ++++..|+.
T Consensus       155 ~~~~~i~~i~~sa~  168 (204)
T d2c78a3         155 FPGDEVPVIRGSAL  168 (204)
T ss_dssp             SCTTTSCEEECCHH
T ss_pred             CCcccceeeeeech
Confidence                 578888874

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=99.81  E-value=3.7e-19  Score=120.92  Aligned_cols=153  Identities=18%  Similarity=0.229  Sum_probs=98.1

Q ss_pred             cCCCCceeEEEEEcCCCCCHHHHHHHHHhCc--CCC-------------------------------CccCceeeeEEEE
Q 030364            4 TSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQ--FFD-------------------------------FQESTIGAAFFTQ   50 (178)
Q Consensus         4 ~~~~~~~~~i~v~G~~~~GKStl~~~l~~~~--~~~-------------------------------~~~~~~~~~~~~~   50 (178)
                      ..+++..+||+++|+.++|||||+.+|+...  ...                               +.....+.+....
T Consensus         3 ~~~~~~~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~   82 (222)
T d1zunb3           3 QHERKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYR   82 (222)
T ss_dssp             STTSCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEE
T ss_pred             ccccCCcceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEE
Confidence            3456679999999999999999999996421  100                               0001111111222


Q ss_pred             EEEeCCeEEEEEEEeCCCchhhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCc-eEEEEEeCCCCcc
Q 030364           51 VLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNL-IMFLVANKVDLEE  129 (178)
Q Consensus        51 ~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-~~ivv~nK~D~~~  129 (178)
                      .....  ...+.++|+||+..|..........+|++++|+|+.++-.-. ....+..+...   ++ .+++++||+|+.+
T Consensus        83 ~~~~~--~~~~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~G~~~Q-t~e~~~~~~~~---gv~~iiv~vNK~D~~~  156 (222)
T d1zunb3          83 YFSTA--KRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQ-TRRHSYIASLL---GIKHIVVAINKMDLNG  156 (222)
T ss_dssp             EEECS--SEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHH-HHHHHHHHHHT---TCCEEEEEEECTTTTT
T ss_pred             EEecc--ceEEEEEeccchhhhhhhhccccccCceEEEEeccccCcccc-hHHHHHHHHHc---CCCEEEEEEEcccccc
Confidence            22223  356779999999999998888899999999999999753222 22233333333   33 4788899999875


Q ss_pred             ccccCH----HHHHHHHHHcC-----CeEEEEeCCCCCCHHH
Q 030364          130 KRKVKN----EEGELYAQENG-----LSFLETSAKSAHNVNE  162 (178)
Q Consensus       130 ~~~~~~----~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~  162 (178)
                      ..+...    .+...+.+..+     ++++++||++|.|+.+
T Consensus       157 ~~~~~~~~~~~~l~~~~~~~~~~~~~i~~IPiSA~~G~ni~~  198 (222)
T d1zunb3         157 FDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVN  198 (222)
T ss_dssp             SCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSS
T ss_pred             ccceehhhhHHHHhhhhHhhccCCCceEEEEEEcccCccCCc
Confidence            332111    22334444443     3789999999999844

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.78  E-value=3e-19  Score=120.65  Aligned_cols=116  Identities=14%  Similarity=0.155  Sum_probs=80.7

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhccchhh----hcCCc
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY----YRGAA   84 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~----~~~~d   84 (178)
                      .+.+|+++|++|||||||+|+|+++++.+    +.+.+.....+..+  ...+.+||+||++.+...+..+    ...++
T Consensus         2 ~~p~V~lvG~~n~GKTSLln~l~~~~~~~----~tt~~~~~~~~~~~--~~~~~l~D~~g~~~~~~~~~~~~~~~~~~~~   75 (209)
T d1nrjb_           2 YQPSIIIAGPQNSGKTSLLTLLTTDSVRP----TVVSQEPLSAADYD--GSGVTLVDFPGHVKLRYKLSDYLKTRAKFVK   75 (209)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHSSCCC----BCCCSSCEEETTGG--GSSCEEEECCCCGGGTHHHHHHHHHHGGGEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCC----eEEecceEEEEEeC--CeEEEEEecccccchhhHHHHHHHHHhhhcc
Confidence            45689999999999999999999987643    23322223333333  3456799999998766554443    45568


Q ss_pred             EEEEEEECCC-HhHHHHHHHHHH----HHHHhCCCCceEEEEEeCCCCccc
Q 030364           85 AAVVVYDITS-MDSFERAKKWVQ----ELQRQGNPNLIMFLVANKVDLEEK  130 (178)
Q Consensus        85 ~~i~v~d~~~-~~s~~~~~~~~~----~~~~~~~~~~~~ivv~nK~D~~~~  130 (178)
                      .+++++|+.+ ..+++....|+.    .+......+.|+++++||+|+.+.
T Consensus        76 ~~i~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~NK~D~~~~  126 (209)
T d1nrjb_          76 GLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTA  126 (209)
T ss_dssp             EEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC
T ss_pred             ccceEEEEecccccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeeccccc
Confidence            8999999774 555555555443    334445678999999999998653

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.78  E-value=3.1e-18  Score=119.27  Aligned_cols=114  Identities=16%  Similarity=0.140  Sum_probs=80.4

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCc--CCC----------------CccCceeeeEEEEEEEeCCeEEEEEEEeCCCch
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVKGQ--FFD----------------FQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE   70 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~~~--~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~   70 (178)
                      +..+|+++|+.++|||||+.+++...  ...                +.....+.......+.+++  .+++++||||+.
T Consensus         5 ~iRni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~~--~~~n~iDtPG~~   82 (276)
T d2bv3a2           5 RLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKD--HRINIIDAPGHV   82 (276)
T ss_dssp             GEEEEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEETT--EEEEEECCCSSS
T ss_pred             hceEEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeeccCC--eEEEEecCCchh
Confidence            35589999999999999999986421  110                0111111122223344454  567799999999


Q ss_pred             hhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCc
Q 030364           71 RYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLE  128 (178)
Q Consensus        71 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~  128 (178)
                      +|.......++-+|+.|+|+|+.++-.... ...++....   .+.|.++++||+|.+
T Consensus        83 dF~~e~~~~l~~~D~avlVvda~~Gv~~~T-~~~w~~a~~---~~lP~i~fINKmDr~  136 (276)
T d2bv3a2          83 DFTIEVERSMRVLDGAIVVFDSSQGVEPQS-ETVWRQAEK---YKVPRIAFANKMDKT  136 (276)
T ss_dssp             SCSTTHHHHHHHCCEEEEEEETTTSSCHHH-HHHHHHHHT---TTCCEEEEEECTTST
T ss_pred             hhHHHHHHHHHhhhheEEeccccCCcchhH-HHHHHHHHH---cCCCEEEEEeccccc
Confidence            999999999999999999999998654443 333344444   489999999999975

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=99.77  E-value=1.5e-18  Score=115.05  Aligned_cols=162  Identities=12%  Similarity=0.053  Sum_probs=84.3

Q ss_pred             CCCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhh-------hcc---
Q 030364            6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERY-------HSL---   75 (178)
Q Consensus         6 ~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~-------~~~---   75 (178)
                      +++..++|+++|.+|+|||||+|+|++.+.........+................+..++.++....       ...   
T Consensus        12 p~~~~~~I~lvG~~NvGKSSL~n~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (188)
T d1puia_          12 PSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQRALGE   91 (188)
T ss_dssp             SCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC------CCHHHHHHHHHH
T ss_pred             CCccCCEEEEECCCCCCHHHHHHHHhCCCceEeecccccceeeccceecccccceeeeecccccchhhhhhhhhhhhhhh
Confidence            3556899999999999999999999887654332222222222222222222222223332221111       111   


Q ss_pred             chhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCH--HHHHHHHHHc--CCeEEE
Q 030364           76 APMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKN--EEGELYAQEN--GLSFLE  151 (178)
Q Consensus        76 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~--~~~~~~~~~~--~~~~~~  151 (178)
                      ........+.++.+.+........ ...++..+...   ..++++++||+|+.+......  +...+.....  ..+++.
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~~~~v~~k~D~~~~~~~~~~~~~~~~~l~~~~~~~~~i~  167 (188)
T d1puia_          92 YLEKRQSLQGLVVLMDIRHPLKDL-DQQMIEWAVDS---NIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVET  167 (188)
T ss_dssp             HHHHCTTEEEEEEEEETTSCCCHH-HHHHHHHHHHT---TCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEE
T ss_pred             hhhhhhheeEEEEeecccccchhH-HHHHHHHhhhc---cccccchhhhhhccCHHHHHHHHHHHHHHHHhhCCCCcEEE
Confidence            111223344555566665533222 23333444333   567899999999865433221  1112222222  358999


Q ss_pred             EeCCCCCCHHHHHHHHHhhc
Q 030364          152 TSAKSAHNVNELFYEIGDCT  171 (178)
Q Consensus       152 ~Sa~~~~~i~~~~~~l~~~i  171 (178)
                      +||++|.|++++++.|.+.+
T Consensus       168 vSA~~g~Gid~L~~~i~~~~  187 (188)
T d1puia_         168 FSSLKKQGVDKLRQKLDTWF  187 (188)
T ss_dssp             CBTTTTBSHHHHHHHHHHHH
T ss_pred             EeCCCCCCHHHHHHHHHHHh
Confidence            99999999999999987654

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.74  E-value=2.4e-18  Score=118.09  Aligned_cols=150  Identities=12%  Similarity=0.141  Sum_probs=97.6

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHHhC--cCC-----------------------------CCccCceeeeEEEEEEEeC
Q 030364            7 KNIQVKLVLLGDMGTGKTSLVLRFVKG--QFF-----------------------------DFQESTIGAAFFTQVLSLN   55 (178)
Q Consensus         7 ~~~~~~i~v~G~~~~GKStl~~~l~~~--~~~-----------------------------~~~~~~~~~~~~~~~~~~~   55 (178)
                      +++.++|+++|+.++|||||+.+|+..  ...                             .+.....+.+.....+.++
T Consensus         3 ~k~~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~   82 (239)
T d1f60a3           3 EKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETP   82 (239)
T ss_dssp             CCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECS
T ss_pred             CCCccEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEeccC
Confidence            456799999999999999999998631  100                             0011122222223333444


Q ss_pred             CeEEEEEEEeCCCchhhhccchhhhcCCcEEEEEEECCCHhHH------HHHHHHHHHHHHhCCCCc-eEEEEEeCCCCc
Q 030364           56 EVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF------ERAKKWVQELQRQGNPNL-IMFLVANKVDLE  128 (178)
Q Consensus        56 ~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~------~~~~~~~~~~~~~~~~~~-~~ivv~nK~D~~  128 (178)
                      +  +++.|+|+||+..|.......+..+|++|+|+|+....--      .+....+......   ++ +++|++||+|+.
T Consensus        83 ~--~~i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~~~~~~---gv~~iiv~iNKmD~~  157 (239)
T d1f60a3          83 K--YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTL---GVRQLIVAVNKMDSV  157 (239)
T ss_dssp             S--EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHT---TCCEEEEEEECGGGG
T ss_pred             C--EEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHHHHHHHHHc---CCCeEEEEEECCCCC
Confidence            4  6788999999999999988899999999999999965311      1223333333333   44 478899999987


Q ss_pred             cccccC----HHHHHHHHHHcC-----CeEEEEeCCCCCCHH
Q 030364          129 EKRKVK----NEEGELYAQENG-----LSFLETSAKSAHNVN  161 (178)
Q Consensus       129 ~~~~~~----~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~  161 (178)
                      +.....    ..+...+....+     ++++.+|+..|.|+-
T Consensus       158 ~~d~~~~~~~~~el~~~l~~~~~~~~~i~~ipiSa~~G~ni~  199 (239)
T d1f60a3         158 KWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMI  199 (239)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTT
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEEccCCCcce
Confidence            543211    122333343333     578999999998863

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.74  E-value=4.1e-18  Score=117.46  Aligned_cols=156  Identities=15%  Similarity=0.175  Sum_probs=84.0

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHHhCc--CCC---------------------------CccCceeeeEEEEEEEeCCeE
Q 030364            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQ--FFD---------------------------FQESTIGAAFFTQVLSLNEVT   58 (178)
Q Consensus         8 ~~~~~i~v~G~~~~GKStl~~~l~~~~--~~~---------------------------~~~~~~~~~~~~~~~~~~~~~   58 (178)
                      ++.++|+++|+.++|||||+.+|+...  ...                           ......+..............
T Consensus        22 k~~iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~  101 (245)
T d1r5ba3          22 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH  101 (245)
T ss_dssp             CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred             CCceEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCcccccccccccccc
Confidence            457899999999999999999995311  000                           000011111111111222233


Q ss_pred             EEEEEEeCCCchhhhccchhhhcCCcEEEEEEECCCHhHH------HHHHHHHHHHHHhCCCCc-eEEEEEeCCCCcccc
Q 030364           59 IKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF------ERAKKWVQELQRQGNPNL-IMFLVANKVDLEEKR  131 (178)
Q Consensus        59 ~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~------~~~~~~~~~~~~~~~~~~-~~ivv~nK~D~~~~~  131 (178)
                      ..+.+.|+||+..|..........+|++++|+|+.+...-      ......+..+...   +. ++++++||+|+....
T Consensus       102 ~~i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~~~~---~i~~iiv~iNKmD~~~~~  178 (245)
T d1r5ba3         102 RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQ---GINHLVVVINKMDEPSVQ  178 (245)
T ss_dssp             EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHT---TCSSEEEEEECTTSTTCS
T ss_pred             ceeeeecccccccchhhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHHHHHHHc---CCCeEEEEEEcCCCCccc
Confidence            5678999999999999988889999999999999974311      0223333333333   33 378889999986422


Q ss_pred             cc---CH---HHHHHHHHHc-------CCeEEEEeCCCCCCHHHHHHH
Q 030364          132 KV---KN---EEGELYAQEN-------GLSFLETSAKSAHNVNELFYE  166 (178)
Q Consensus       132 ~~---~~---~~~~~~~~~~-------~~~~~~~Sa~~~~~i~~~~~~  166 (178)
                      ..   ..   ++...+....       .++++++||++|+||.++++.
T Consensus       179 ~~e~~~~ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~~~~s  226 (245)
T d1r5ba3         179 WSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVDS  226 (245)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCCT
T ss_pred             hhHHHHHHHHHHHHHHHHHHhCcCcccCCEEEEeeccCCCCcccchhc
Confidence            11   00   1112222221       258999999999999876543

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=99.73  E-value=2.9e-17  Score=114.03  Aligned_cols=112  Identities=17%  Similarity=0.110  Sum_probs=79.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCcCC-CC-----------------ccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhh
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVKGQFF-DF-----------------QESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERY   72 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~~~~~-~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~   72 (178)
                      .+|+++|+.++|||||+.+|+...-. ..                 .....+.......+.+++  .++.++||||+.+|
T Consensus         3 RNv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~--~~~n~iDtPGh~dF   80 (267)
T d2dy1a2           3 RTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRG--HRVFLLDAPGYGDF   80 (267)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETT--EEEEEEECCCSGGG
T ss_pred             eEEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccccccc--cceeEEccCchhhh
Confidence            47999999999999999998642110 00                 011112223334455555  46779999999999


Q ss_pred             hccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCc
Q 030364           73 HSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLE  128 (178)
Q Consensus        73 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~  128 (178)
                      .......++.+|++|+|+|+.++-..... ..++.....   +.|.++++||+|..
T Consensus        81 ~~e~~~al~~~D~avlvvda~~Gv~~~t~-~~~~~~~~~---~~p~~i~iNk~D~~  132 (267)
T d2dy1a2          81 VGEIRGALEAADAALVAVSAEAGVQVGTE-RAWTVAERL---GLPRMVVVTKLDKG  132 (267)
T ss_dssp             HHHHHHHHHHCSEEEEEEETTTCSCHHHH-HHHHHHHHT---TCCEEEEEECGGGC
T ss_pred             hhhhhhhhcccCceEEEeeccCCccchhH-HHHHhhhhc---cccccccccccccc
Confidence            99999999999999999999976544433 333444444   78899999999964

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.73  E-value=9.3e-18  Score=114.48  Aligned_cols=152  Identities=17%  Similarity=0.225  Sum_probs=93.8

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCc--CCC---------------------------CccCceeeeEEEEEEEeCCeEE
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVKGQ--FFD---------------------------FQESTIGAAFFTQVLSLNEVTI   59 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~~~--~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~   59 (178)
                      +.++|+++|+.++|||||+.+|+...  ...                           ..+...+.+........+...+
T Consensus         2 p~iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~~   81 (224)
T d1jnya3           2 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKY   81 (224)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSC
T ss_pred             CccEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCccccceEEEEecCCc
Confidence            58999999999999999999886411  000                           0011122222223333344446


Q ss_pred             EEEEEeCCCchhhhccchhhhcCCcEEEEEEECCCHhHH------HHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccc
Q 030364           60 KFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF------ERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKV  133 (178)
Q Consensus        60 ~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~------~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~  133 (178)
                      .+.++|+||+..|.......+.-+|+.|+|+|+.+...-      ....+.+......  ...++++++||+|+..+...
T Consensus        82 ~i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~~~~--~~~~iIv~iNK~D~~~~~~~  159 (224)
T d1jnya3          82 FFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTM--GLDQLIVAVNKMDLTEPPYD  159 (224)
T ss_dssp             EEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHT--TCTTCEEEEECGGGSSSTTC
T ss_pred             eeEEeeCCCcHHHHHHHHHHHHhhceEEEEEecccCcccccccccchhHHHHHHHHHh--CCCceEEEEEcccCCCcccc
Confidence            788999999999999999999999999999999985321      1222222222222  23457888999998642211


Q ss_pred             C------HHHHHHHHHHc-----CCeEEEEeCCCCCCHHH
Q 030364          134 K------NEEGELYAQEN-----GLSFLETSAKSAHNVNE  162 (178)
Q Consensus       134 ~------~~~~~~~~~~~-----~~~~~~~Sa~~~~~i~~  162 (178)
                      .      ..+...+....     .++++++||..|.|+.+
T Consensus       160 ~~~~~~v~~~i~~~~~~~~~~~~~i~~IPISA~~G~NV~~  199 (224)
T d1jnya3         160 EKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITH  199 (224)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTB
T ss_pred             HHHHHHHHHHHHhHHHhcCCCcccCeEEEEEccCCCCccc
Confidence            1      11222333333     35889999999999854

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.64  E-value=2.3e-15  Score=110.57  Aligned_cols=159  Identities=13%  Similarity=0.127  Sum_probs=92.0

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccC---ceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhcc-----chhhh
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQES---TIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSL-----APMYY   80 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~-----~~~~~   80 (178)
                      ..++|+|+|.+|+|||||+|+|.+.........   ..+++.....+...+ .-.+.+|||||.......     ....+
T Consensus        55 ~~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~~~~~~~-~~~~~l~DtPG~~~~~~~~~~~~~~~~~  133 (400)
T d1tq4a_          55 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPN-IPNVVFWDLPGIGSTNFPPDTYLEKMKF  133 (400)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSS-CTTEEEEECCCGGGSSCCHHHHHHHTTG
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceeeeeeeccC-CCeEEEEeCCCcccccccHHHHHHHhhh
Confidence            468999999999999999999998543222111   111222122222222 123569999997543322     22235


Q ss_pred             cCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccc-------cccCHHHH----H----HHHHHc
Q 030364           81 RGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEK-------RKVKNEEG----E----LYAQEN  145 (178)
Q Consensus        81 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~-------~~~~~~~~----~----~~~~~~  145 (178)
                      ..+|.++++.|..-.+.   -..+++.+...   ++|+++|.||+|....       .....+..    +    ......
T Consensus       134 ~~~d~~l~~~~~~~~~~---d~~l~~~l~~~---~k~~~~V~nK~D~~~~~~~~~~~~~~~~e~~l~~ir~~~~~~l~~~  207 (400)
T d1tq4a_         134 YEYDFFIIISATRFKKN---DIDIAKAISMM---KKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFREN  207 (400)
T ss_dssp             GGCSEEEEEESSCCCHH---HHHHHHHHHHT---TCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHT
T ss_pred             hcceEEEEecCCCCCHH---HHHHHHHHHHc---CCCEEEEEeCcccccchhhhcccccccHHHHHHHHHHHHHHHHHHc
Confidence            67888888877543221   12334445443   7899999999996311       11111111    1    111222


Q ss_pred             C---CeEEEEeCCC--CCCHHHHHHHHHhhcccc
Q 030364          146 G---LSFLETSAKS--AHNVNELFYEIGDCTECF  174 (178)
Q Consensus       146 ~---~~~~~~Sa~~--~~~i~~~~~~l~~~i~~~  174 (178)
                      +   -++|.+|..+  ..|+.++.+++.+.+...
T Consensus       208 ~~~~~~vflvS~~~~~~~d~~~L~~~l~~~L~~~  241 (400)
T d1tq4a_         208 GIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIY  241 (400)
T ss_dssp             TCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGG
T ss_pred             CCCCCCEEEecCCcccccCHHHHHHHHHHHhHHH
Confidence            3   2688888754  358999999998887653

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.62  E-value=2.6e-15  Score=104.17  Aligned_cols=124  Identities=11%  Similarity=0.076  Sum_probs=74.7

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHHhCcCCCCc-cCceeeeEEEEEEEeCCeEEEEEEEeCCCchhhhcc-------ch--
Q 030364            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQ-ESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSL-------AP--   77 (178)
Q Consensus         8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~-------~~--   77 (178)
                      ...++|+++|.+|+|||||+|++++....... .+..+..........++  ..+.++||||.......       ..  
T Consensus        30 ~~~l~I~LvG~tg~GKSSliN~ilg~~~~~vs~~~~~T~~~~~~~~~~~g--~~i~viDTPGl~~~~~~~~~~~~~i~~~  107 (257)
T d1h65a_          30 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAG--FTLNIIDTPGLIEGGYINDMALNIIKSF  107 (257)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCcHHHHHHHHhCCCceeecCCCCcceeEEEEEEEecc--EEEEEEeeecccCCcchHHHHHHHHHHH
Confidence            45899999999999999999999987654322 22222333344445566  45779999995322211       11  


Q ss_pred             hhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCC--CceEEEEEeCCCCcccccc
Q 030364           78 MYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNP--NLIMFLVANKVDLEEKRKV  133 (178)
Q Consensus        78 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~~ivv~nK~D~~~~~~~  133 (178)
                      ......+++++|++++...--..-...+..+.....+  -.+++||.||+|...+...
T Consensus       108 ~~~~~~~~il~v~~~~~~r~~~~~~~~l~~l~~~fg~~~~~~~ivv~t~~D~~~~~~~  165 (257)
T d1h65a_         108 LLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGL  165 (257)
T ss_dssp             TTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGGC
T ss_pred             HhcCCCCeEEEEEECCCCCCCHHHHHHHHHHHHHcchhhhhCEEEEEECcccCCcCCC
Confidence            1123568899998887532111112223333332222  2468999999998654443

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.60  E-value=1.8e-15  Score=108.28  Aligned_cols=117  Identities=19%  Similarity=0.185  Sum_probs=79.5

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHHhCc--CC--------------CCccCceeeeEEEEEEEe--------------CCe
Q 030364            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQ--FF--------------DFQESTIGAAFFTQVLSL--------------NEV   57 (178)
Q Consensus         8 ~~~~~i~v~G~~~~GKStl~~~l~~~~--~~--------------~~~~~~~~~~~~~~~~~~--------------~~~   57 (178)
                      +...+|+|+|+.++|||||+.+|+...  ..              .+..+..+.......+.+              ++.
T Consensus        15 ~~IRNI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~~~~~~   94 (341)
T d1n0ua2          15 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN   94 (341)
T ss_dssp             GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred             ccCcEEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEEEeccCcccccchhcccccc
Confidence            334469999999999999999997411  10              001111111111111111              345


Q ss_pred             EEEEEEEeCCCchhhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCc
Q 030364           58 TIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLE  128 (178)
Q Consensus        58 ~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~  128 (178)
                      .+.+.++||||+.+|.......++-+|++++|+|+.++-......- ++....   .+.|+++++||+|..
T Consensus        95 ~~~inliDtPGh~dF~~ev~~al~~~D~allVVda~eGv~~qT~~~-~~~a~~---~~~p~i~viNKiDr~  161 (341)
T d1n0ua2          95 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETV-LRQALG---ERIKPVVVINKVDRA  161 (341)
T ss_dssp             EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHH-HHHHHH---TTCEEEEEEECHHHH
T ss_pred             ceEEEEEcCCCcHHHHHHHHHHHhhcCceEEEEecccCcchhHHHH-HHHHHH---cCCCeEEEEECcccc
Confidence            6889999999999999999999999999999999998654444333 333333   378999999999974

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=99.51  E-value=2.7e-14  Score=101.72  Aligned_cols=105  Identities=13%  Similarity=0.102  Sum_probs=64.9

Q ss_pred             EEEEEEeCCCchhhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHH
Q 030364           59 IKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEG  138 (178)
Q Consensus        59 ~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~  138 (178)
                      +.+.|++|.|.....   ......+|.+++|.....++.....+.   -+...     +-++|+||+|+.+.........
T Consensus       144 ~d~iiiETVG~gq~e---~~~~~~~D~~v~v~~p~~GD~iQ~~k~---gilE~-----aDi~vvNKaD~~~~~~~~~~~~  212 (323)
T d2qm8a1         144 FDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKK---GIFEL-----ADMIAVNKADDGDGERRASAAA  212 (323)
T ss_dssp             CCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCT---THHHH-----CSEEEEECCSTTCCHHHHHHHH
T ss_pred             CCeEEEeehhhhhhh---hhhhcccceEEEEeeccchhhhhhhhh---hHhhh-----hheeeEeccccccchHHHHHHH
Confidence            456678887753322   223456999999999998764443322   22222     2389999999876544333322


Q ss_pred             HHHHHH----------cCCeEEEEeCCCCCCHHHHHHHHHhhcccc
Q 030364          139 ELYAQE----------NGLSFLETSAKSAHNVNELFYEIGDCTECF  174 (178)
Q Consensus       139 ~~~~~~----------~~~~~~~~Sa~~~~~i~~~~~~l~~~i~~~  174 (178)
                      ..+...          +..+++.+||++|.|+++++++|.+.....
T Consensus       213 ~~~~~~l~~~~~~~~~~~p~V~~~Sa~~g~Gi~el~~~I~~~~~~~  258 (323)
T d2qm8a1         213 SEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRSKL  258 (323)
T ss_dssp             HHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhcccccccCCCCceEEEEecCCCCHHHHHHHHHHHHHHH
Confidence            222222          345899999999999999999998766543

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=99.50  E-value=1.4e-14  Score=103.31  Aligned_cols=102  Identities=21%  Similarity=0.125  Sum_probs=58.2

Q ss_pred             EEEEeCCCchhhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHH--HH
Q 030364           61 FDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNE--EG  138 (178)
Q Consensus        61 ~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~--~~  138 (178)
                      +.+++|.|.....   ..+...+|.+++|.++...+.....+..+-++        +-++|+||+|.+........  +.
T Consensus       149 ~iliEtvG~gq~e---~~i~~~aD~~l~v~~P~~Gd~iq~~k~gi~e~--------aDi~VvNKaD~~~~~~~~~~~~~~  217 (327)
T d2p67a1         149 VVIVETVGVGQSE---TEVARMVDCFISLQIAGGGDDLQGIKKGLMEV--------ADLIVINKDDGDNHTNVAIARHMY  217 (327)
T ss_dssp             EEEEEEECCTTHH---HHHHTTCSEEEEEECC------CCCCHHHHHH--------CSEEEECCCCTTCHHHHHHHHHHH
T ss_pred             eEEEeeccccccc---hhhhhccceEEEEecCCCchhhhhhchhhhcc--------ccEEEEEeecccchHHHHHHHHHH
Confidence            3455555532211   23456789999999877655443333332222        22788999998754322111  11


Q ss_pred             HHHH-------HHcCCeEEEEeCCCCCCHHHHHHHHHhhccc
Q 030364          139 ELYA-------QENGLSFLETSAKSAHNVNELFYEIGDCTEC  173 (178)
Q Consensus       139 ~~~~-------~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~~  173 (178)
                      ....       ..+..+++.|||++|+|++++++.|.+....
T Consensus       218 ~~al~~~~~~~~~w~p~V~~~SA~~g~Gi~eL~~~I~~~~~~  259 (327)
T d2p67a1         218 ESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKTA  259 (327)
T ss_dssp             HHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHHH
T ss_pred             HHHhhhcccCCCCCcceeEEEEeeCCCCHHHHHHHHHHHHHH
Confidence            1111       1234589999999999999999999876554

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=99.49  E-value=1.2e-14  Score=99.84  Aligned_cols=110  Identities=15%  Similarity=0.035  Sum_probs=65.7

Q ss_pred             EEEEEEeCCCchhhhccchhh-----hcCCcEEEEEEECCC---HhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccc
Q 030364           59 IKFDIWDTAGQERYHSLAPMY-----YRGAAAAVVVYDITS---MDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEK  130 (178)
Q Consensus        59 ~~~~i~d~~g~~~~~~~~~~~-----~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~  130 (178)
                      ..+.+.|+||+..+.......     ....+.+++++|+..   +..+............  .-..|.++++||+|+...
T Consensus        95 ~~~~~id~~g~~~~~~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~--~~~~~~ivvinK~D~~~~  172 (244)
T d1yrba1          95 NDYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDL--RLGATTIPALNKVDLLSE  172 (244)
T ss_dssp             CSEEEEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHH--HHTSCEEEEECCGGGCCH
T ss_pred             cceeeeccccchhHHHHHHHHHHHHhhccCceEEEEeccccccCchhHhhHHHHHHHHHH--HhCCCceeeeeccccccH
Confidence            347799999987654433222     124568889999763   3333322211111111  136789999999998653


Q ss_pred             cccCHHH--------------------------HHHHHH--HcCCeEEEEeCCCCCCHHHHHHHHHhh
Q 030364          131 RKVKNEE--------------------------GELYAQ--ENGLSFLETSAKSAHNVNELFYEIGDC  170 (178)
Q Consensus       131 ~~~~~~~--------------------------~~~~~~--~~~~~~~~~Sa~~~~~i~~~~~~l~~~  170 (178)
                      .......                          .....+  ...++++++||++|+|+++++.+|.+.
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vSa~~geGi~~L~~~l~e~  240 (244)
T d1yrba1         173 EEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEH  240 (244)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            2211100                          000011  134789999999999999999998764

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=99.33  E-value=1.3e-11  Score=86.17  Aligned_cols=84  Identities=17%  Similarity=0.052  Sum_probs=52.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCe---------------EEEEEEEeCCCch----
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEV---------------TIKFDIWDTAGQE----   70 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~d~~g~~----   70 (178)
                      .+||.++|.|+||||||++++++........|.++.......+.+++.               ...+.+.|.||.-    
T Consensus         2 ~~~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~ga~   81 (278)
T d1jala1           2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS   81 (278)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHCCCCccccCCCCCCCCceEEEecccHhHHHHHHhcCCCceeeeeEEEEEccccCCCcc
Confidence            479999999999999999999987654322233332222223333321               1357899999951    


Q ss_pred             hhhc---cchhhhcCCcEEEEEEECC
Q 030364           71 RYHS---LAPMYYRGAAAAVVVYDIT   93 (178)
Q Consensus        71 ~~~~---~~~~~~~~~d~~i~v~d~~   93 (178)
                      .-..   ..-..++.+|+++.|+|+.
T Consensus        82 ~g~Glg~~FL~~ir~~d~LihVVr~f  107 (278)
T d1jala1          82 KGEGLGNKFLANIRETDAIGHVVRCF  107 (278)
T ss_dssp             HHGGGTCCHHHHHHTCSEEEEEEECS
T ss_pred             cCCCccHHHHHHHHhccceEEEeecc
Confidence            1111   2334578999999999863

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.15  E-value=5e-11  Score=84.82  Aligned_cols=83  Identities=17%  Similarity=0.053  Sum_probs=45.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCcCCCCccCce------eeeEEEEEEE----------------eCCeEEEEEEEeCCC
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTI------GAAFFTQVLS----------------LNEVTIKFDIWDTAG   68 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~------~~~~~~~~~~----------------~~~~~~~~~i~d~~g   68 (178)
                      ++|.++|.||||||||+|+|++.......-|.+      |.........                .......++++|+||
T Consensus         1 ~~v~lvG~pn~GKStlfn~lt~~~~~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~pG   80 (319)
T d1wxqa1           1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (319)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CcEeEECCCCCCHHHHHHHHHCCCCchhcCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEECCC
Confidence            689999999999999999999865432222211      2221111111                012346788999999


Q ss_pred             chhh-------hccchhhhcCCcEEEEEEECC
Q 030364           69 QERY-------HSLAPMYYRGAAAAVVVYDIT   93 (178)
Q Consensus        69 ~~~~-------~~~~~~~~~~~d~~i~v~d~~   93 (178)
                      .-..       ....-..++.+|++++|+|+.
T Consensus        81 li~ga~~g~~~~~~~l~~i~~~d~ii~VVd~~  112 (319)
T d1wxqa1          81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDAT  112 (319)
T ss_dssp             --------------CCCSSTTCSEEEEEEETT
T ss_pred             cccchhcccchHHHHHHhhccceEEEEEeccc
Confidence            5221       112233467899999999986

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.14  E-value=3.3e-10  Score=79.75  Aligned_cols=118  Identities=16%  Similarity=0.182  Sum_probs=69.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCcC-CCCccCceeeeEEEEEEEe----------CC----------------------
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVKGQF-FDFQESTIGAAFFTQVLSL----------NE----------------------   56 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~~~~-~~~~~~~~~~~~~~~~~~~----------~~----------------------   56 (178)
                      ..+|+|+|..++|||||+|+|++..+ +....+++..........-          ++                      
T Consensus        26 ~P~ivvvG~~SsGKSsliNaLlg~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (299)
T d2akab1          26 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG  105 (299)
T ss_dssp             CCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHCS
T ss_pred             CCeEEEEcCCCCCHHHHHHHHhCCCcCCCCCCccccCCEEEEEeccccceeEEEeCCCCeeCCHHHHHHHHHHHHHHhhC
Confidence            55899999999999999999999775 3333333322211111110          00                      


Q ss_pred             -----------------eEEEEEEEeCCCchhh-------------hccchhhhcCCc-EEEEEEECCCHhHHHHHHHHH
Q 030364           57 -----------------VTIKFDIWDTAGQERY-------------HSLAPMYYRGAA-AAVVVYDITSMDSFERAKKWV  105 (178)
Q Consensus        57 -----------------~~~~~~i~d~~g~~~~-------------~~~~~~~~~~~d-~~i~v~d~~~~~s~~~~~~~~  105 (178)
                                       ....+.++|+||....             ..+...|+...+ ++++|.+++..-.-.....+.
T Consensus       106 ~~~~~~~~~i~l~~~~p~~~~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~~~~~  185 (299)
T d2akab1         106 TNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIA  185 (299)
T ss_dssp             STTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHH
T ss_pred             CCcCcCCccEEEEEcCCCCCCeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCccceeeeecccccchhhhHHHHHH
Confidence                             0112669999995321             123344566666 555666666544433444444


Q ss_pred             HHHHHhCCCCceEEEEEeCCCCccc
Q 030364          106 QELQRQGNPNLIMFLVANKVDLEEK  130 (178)
Q Consensus       106 ~~~~~~~~~~~~~ivv~nK~D~~~~  130 (178)
                      +.+.   ....++++|+||+|....
T Consensus       186 ~~~~---~~~~r~i~Vltk~D~~~~  207 (299)
T d2akab1         186 KEVD---PQGQRTIGVITKLDLMDE  207 (299)
T ss_dssp             HHHC---TTCSSEEEEEECGGGSCT
T ss_pred             HHhC---cCCCceeeEEeccccccc
Confidence            4432   234678999999998654

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.06  E-value=4.2e-10  Score=79.12  Aligned_cols=86  Identities=14%  Similarity=0.067  Sum_probs=56.4

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHHhCcC--CCCccCceeeeEEEEEEEeCC---------------eEEEEEEEeCCCch
Q 030364            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQF--FDFQESTIGAAFFTQVLSLNE---------------VTIKFDIWDTAGQE   70 (178)
Q Consensus         8 ~~~~~i~v~G~~~~GKStl~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~i~d~~g~~   70 (178)
                      ...++|.++|.|+||||||+|++++...  ...| |.++.+.....+.+++               ....+.+.|.||.-
T Consensus         8 ~~~~kiGivG~Pn~GKSTlfnalT~~~~~~~any-pftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv   86 (296)
T d1ni3a1           8 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANY-PYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLT   86 (296)
T ss_dssp             SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCC-SSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHCCCCCCcCCC-CccCccCCeEEEeccccchhhhhhcccCCceecccceeeeccccc
Confidence            3579999999999999999999997643  2323 3333222233334333               12467899999852


Q ss_pred             hhh-------ccchhhhcCCcEEEEEEECCC
Q 030364           71 RYH-------SLAPMYYRGAAAAVVVYDITS   94 (178)
Q Consensus        71 ~~~-------~~~~~~~~~~d~~i~v~d~~~   94 (178)
                      .-.       ...-..++.+|+++.|+|+.+
T Consensus        87 ~gA~~g~GLGn~fL~~ir~~d~lihVV~~f~  117 (296)
T d1ni3a1          87 KGASTGVGLGNAFLSHVRAVDAIYQVVRAFD  117 (296)
T ss_dssp             CCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             cccccccccHHHHHHHhhccceeEEEEeccC
Confidence            211       123344689999999998864

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=99.00  E-value=7.1e-10  Score=78.26  Aligned_cols=26  Identities=27%  Similarity=0.523  Sum_probs=23.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCcC
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVKGQF   35 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~~~~   35 (178)
                      -.+|+|+|..++|||||+|.|++..+
T Consensus        24 lP~ivVvG~~ssGKSSliNaLlG~~~   49 (306)
T d1jwyb_          24 LPQIVVVGSQSSGKSSVLENIVGRDF   49 (306)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHTSCC
T ss_pred             CCeEEEEeCCCCCHHHHHHHHhCCCC
Confidence            35899999999999999999998775

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.87  E-value=1.1e-09  Score=76.15  Aligned_cols=60  Identities=20%  Similarity=0.334  Sum_probs=37.1

Q ss_pred             CCCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCc
Q 030364            6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ   69 (178)
Q Consensus         6 ~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~   69 (178)
                      .....++|+|+|.||||||||+|+|.+.+... ..+.+|.+.....+..+.   .+.++||||.
T Consensus       108 ~~~~~~~v~vvG~PNvGKSsliN~L~~~~~~~-~~~~pG~Tr~~~~i~~~~---~~~l~DTPGi  167 (273)
T d1puja_         108 VKPRAIRALIIGIPNVGKSTLINRLAKKNIAK-TGDRPGITTSQQWVKVGK---ELELLDTPGI  167 (273)
T ss_dssp             CCCCCEEEEEEESTTSSHHHHHHHHHTSCCC-------------CCEEETT---TEEEEECCCC
T ss_pred             CCCCceEEEEEecCccchhhhhhhhhccceEE-ECCcccccccceEEECCC---CeEEecCCCc
Confidence            34568999999999999999999999866432 445555554443333333   3669999996

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.69  E-value=3.2e-08  Score=66.07  Aligned_cols=89  Identities=17%  Similarity=0.178  Sum_probs=63.1

Q ss_pred             hhcCCcEEEEEEECCCHh-HHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHH--HcCCeEEEEeCC
Q 030364           79 YYRGAAAAVVVYDITSMD-SFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQ--ENGLSFLETSAK  155 (178)
Q Consensus        79 ~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~--~~~~~~~~~Sa~  155 (178)
                      ...+.|.+++|+++.+|+ +...+.+++-.....   +.|.++|+||+|+.++.+.  +....+..  ..+.+++.+|++
T Consensus         7 ~vANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~~---~i~pvIvlnK~DL~~~~~~--~~~~~~~~~~~~~~~v~~vSa~   81 (225)
T d1u0la2           7 HVANVDQVILVVTVKMPETSTYIIDKFLVLAEKN---ELETVMVINKMDLYDEDDL--RKVRELEEIYSGLYPIVKTSAK   81 (225)
T ss_dssp             TEESCCEEEEEECSSTTCCCHHHHHHHHHHHHHT---TCEEEEEECCGGGCCHHHH--HHHHHHHHHHTTTSCEEECCTT
T ss_pred             CcccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHc---CCCEEEEEeCcccCCHHHH--HHHHHhhcccccceeEEEeccc
Confidence            357889999999988764 455566665555443   7889999999999754322  12222222  234789999999


Q ss_pred             CCCCHHHHHHHHHhhcc
Q 030364          156 SAHNVNELFYEIGDCTE  172 (178)
Q Consensus       156 ~~~~i~~~~~~l~~~i~  172 (178)
                      ++.|++++..+|..+..
T Consensus        82 ~~~g~~~L~~~l~~kt~   98 (225)
T d1u0la2          82 TGMGIEELKEYLKGKIS   98 (225)
T ss_dssp             TCTTHHHHHHHHSSSEE
T ss_pred             cchhHhhHHHHhcCCeE
Confidence            99999999988865443

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.61  E-value=8e-09  Score=69.05  Aligned_cols=60  Identities=20%  Similarity=0.150  Sum_probs=36.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCcCCCC--ccC----ceeeeEEEEEEEeCCeEEEEEEEeCCCchhhh
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVKGQFFDF--QES----TIGAAFFTQVLSLNEVTIKFDIWDTAGQERYH   73 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~~~~~~~--~~~----~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~   73 (178)
                      -..+++|++|||||||+|+|.+......  ...    ..-++.....+.+++..   .++||||...+.
T Consensus        96 kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~~~~rGrHTTt~~~l~~l~~gg---~iiDTPG~r~~~  161 (225)
T d1u0la2          96 KISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGG---YVVDTPGFANLE  161 (225)
T ss_dssp             SEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSC---EEESSCSSTTCC
T ss_pred             CeEEEECCCCCCHHHHHHhhcchhhhhccCcccccCCCCccccceeEEEECCCc---EEEeCCcccccc
Confidence            3678999999999999999987543211  111    11133334445555433   389999975443

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.56  E-value=4.2e-07  Score=58.43  Aligned_cols=22  Identities=41%  Similarity=0.804  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      +||+++|++|+|||||++.+.+
T Consensus         1 ~ki~I~G~~G~GKSTLl~~i~~   22 (178)
T d1ye8a1           1 MKIIITGEPGVGKTTLVKKIVE   22 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCcHHHHHHHHHHh
Confidence            6899999999999999999986

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.44  E-value=1.6e-08  Score=67.81  Aligned_cols=58  Identities=17%  Similarity=0.135  Sum_probs=32.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCcCCCC--cc----CceeeeEEEEEEEeCCeEEEEEEEeCCCchhhh
Q 030364           12 KLVLLGDMGTGKTSLVLRFVKGQFFDF--QE----STIGAAFFTQVLSLNEVTIKFDIWDTAGQERYH   73 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~~~~~~~--~~----~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~   73 (178)
                      ..+++|++|||||||+|+|.+......  ..    ...-++.....+..++.    .++|+||...+.
T Consensus        99 ~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~~~~rGrHTTt~~~l~~~~gg----~iiDTPG~r~~~  162 (231)
T d1t9ha2          99 TTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSGG----LVADTPGFSSLE  162 (231)
T ss_dssp             EEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEETTE----EEESSCSCSSCC
T ss_pred             eEEEECCCCccHHHHHHhhccHhHhhhcccccccCCCceeeeeEEEEecCCC----EEEECCcccccc
Confidence            567999999999999999987532111  11    11112222223344543    278999975543

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.37  E-value=8e-06  Score=54.44  Aligned_cols=24  Identities=29%  Similarity=0.454  Sum_probs=20.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhC
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      ..-.+|.|..|||||||+++++..
T Consensus         3 iPv~iitGFLGaGKTTll~~lL~~   26 (222)
T d1nija1           3 IAVTLLTGFLGAGKTTLLRHILNE   26 (222)
T ss_dssp             EEEEEEEESSSSSCHHHHHHHHHS
T ss_pred             CCEEEEeeCCCCCHHHHHHHHHhc
Confidence            344788899999999999999875

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=98.32  E-value=9.8e-07  Score=58.43  Aligned_cols=90  Identities=18%  Similarity=0.153  Sum_probs=50.6

Q ss_pred             EEEEEEeCCCchhhhcc----chhh---h-----cCCcEEEEEEECCCH-hHHHHHHHHHHHHHHhCCCCceEEEEEeCC
Q 030364           59 IKFDIWDTAGQERYHSL----APMY---Y-----RGAAAAVVVYDITSM-DSFERAKKWVQELQRQGNPNLIMFLVANKV  125 (178)
Q Consensus        59 ~~~~i~d~~g~~~~~~~----~~~~---~-----~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~  125 (178)
                      +.+.++||+|...+...    ...+   .     ...+-.++|+|++.. +.+..+...+..+   .    +--+++||.
T Consensus        94 ~d~ilIDTaGr~~~d~~~~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~---~----~~~lI~TKl  166 (213)
T d1vmaa2          94 KDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQNGLVQAKIFKEAV---N----VTGIILTKL  166 (213)
T ss_dssp             CSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHHHHHHHHHHHHHHS---C----CCEEEEECG
T ss_pred             CCEEEEeccccccchHHHHHHHHHHHhhhhhccccccceeEEeeccccCcchhhhhhhhcccc---C----CceEEEecc
Confidence            45789999995333221    1111   1     124678999999854 3333333322222   1    236789999


Q ss_pred             CCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHH
Q 030364          126 DLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVN  161 (178)
Q Consensus       126 D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  161 (178)
                      |...  .  .=.........+.|+..++  +|++++
T Consensus       167 De~~--~--~G~~l~~~~~~~~Pi~~i~--~Gq~v~  196 (213)
T d1vmaa2         167 DGTA--K--GGITLAIARELGIPIKFIG--VGEKAE  196 (213)
T ss_dssp             GGCS--C--TTHHHHHHHHHCCCEEEEE--CSSSGG
T ss_pred             cCCC--c--ccHHHHHHHHHCCCEEEEe--CCCCcc
Confidence            9532  1  1234555667888887776  455554

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.27  E-value=7.8e-07  Score=61.39  Aligned_cols=89  Identities=10%  Similarity=0.076  Sum_probs=61.0

Q ss_pred             chhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCC
Q 030364           76 APMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAK  155 (178)
Q Consensus        76 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  155 (178)
                      ....++.+|++++|+|+.+|.+..+  ..+..+    ..++|.++|+||+|+.+....  ++-.......+..++.+|+.
T Consensus         9 i~~~i~~~DvIl~V~DaR~P~ss~~--~~l~~~----~~~Kp~IlVlNK~DLv~~~~~--~~w~~~f~~~~~~~i~isa~   80 (273)
T d1puja_           9 VTEKLKLIDIVYELVDARIPMSSRN--PMIEDI----LKNKPRIMLLNKADKADAAVT--QQWKEHFENQGIRSLSINSV   80 (273)
T ss_dssp             HHHHGGGCSEEEEEEETTSTTTTSC--HHHHHH----CSSSCEEEEEECGGGSCHHHH--HHHHHHHHTTTCCEEECCTT
T ss_pred             HHHHHHhCCEEEEEEECCCCCCCCC--HHHHHH----HcCCCeEEEEECccCCchHHH--HHHHHHHHhcCCccceeecc
Confidence            3456889999999999998765433  111222    136799999999998764322  22223334456889999999


Q ss_pred             CCCCHHHHHHHHHhhcc
Q 030364          156 SAHNVNELFYEIGDCTE  172 (178)
Q Consensus       156 ~~~~i~~~~~~l~~~i~  172 (178)
                      ++.+...+...+.+.+.
T Consensus        81 ~~~~~~~~~~~~~~~l~   97 (273)
T d1puja_          81 NGQGLNQIVPASKEILQ   97 (273)
T ss_dssp             TCTTGGGHHHHHHHHHH
T ss_pred             cCCCccccchhhhhhhh
Confidence            99998887776655443

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.27  E-value=1e-07  Score=63.80  Aligned_cols=89  Identities=15%  Similarity=0.179  Sum_probs=62.0

Q ss_pred             hhcCCcEEEEEEECCCHh-HHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCH--HHHHHHHHHcCCeEEEEeCC
Q 030364           79 YYRGAAAAVVVYDITSMD-SFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKN--EEGELYAQENGLSFLETSAK  155 (178)
Q Consensus        79 ~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~--~~~~~~~~~~~~~~~~~Sa~  155 (178)
                      ...+.|.+++|+++.+|+ ++..+.+++-....   .+.+.+||+||+|+.+..+...  ..........+++++.+|++
T Consensus         7 ~vANiD~~~iV~s~~~P~~~~~~idR~Lv~a~~---~~i~pvIvlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~~Sa~   83 (231)
T d1t9ha2           7 PICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA---NDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTSSK   83 (231)
T ss_dssp             TEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT---TTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEECCHH
T ss_pred             CccccCEEEEEEECCCCCCCHHHHHHHHHHHHH---cCCCEEEEEecccccccHHHHHHHHHHHHHHhhccccceeeecC
Confidence            347889999999998764 45556655544433   4788999999999965432211  11122334568999999999


Q ss_pred             CCCCHHHHHHHHHhh
Q 030364          156 SAHNVNELFYEIGDC  170 (178)
Q Consensus       156 ~~~~i~~~~~~l~~~  170 (178)
                      ++.|++++..+|...
T Consensus        84 ~~~gl~~L~~~l~~~   98 (231)
T d1t9ha2          84 DQDSLADIIPHFQDK   98 (231)
T ss_dssp             HHTTCTTTGGGGTTS
T ss_pred             ChhHHHHHHHhhccc
Confidence            999999988766543

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=98.27  E-value=6.6e-06  Score=54.22  Aligned_cols=90  Identities=17%  Similarity=0.152  Sum_probs=51.4

Q ss_pred             EEEEEEeCCCchhhhcc----ch---hhhc-----CCcEEEEEEECCCH-hHHHHHHHHHHHHHHhCCCCceEEEEEeCC
Q 030364           59 IKFDIWDTAGQERYHSL----AP---MYYR-----GAAAAVVVYDITSM-DSFERAKKWVQELQRQGNPNLIMFLVANKV  125 (178)
Q Consensus        59 ~~~~i~d~~g~~~~~~~----~~---~~~~-----~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~  125 (178)
                      +.+.++||+|....+..    ..   ...+     ..+-.++|.|++.. +....+...+..+    .   +--+++||.
T Consensus        92 ~d~ilIDTaGr~~~d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~----~---~~~lIlTKl  164 (211)
T d2qy9a2          92 IDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFHEAV----G---LTGITLTKL  164 (211)
T ss_dssp             CSEEEECCCCCGGGHHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGTHHHHHHHHHHHHHS----C---CCEEEEECC
T ss_pred             CCEEEeccCCCccccHHHHHHHHHHHHHHhhhcccCcceeeeehhcccCcchHHHHhhhhhcc----C---CceEEEeec
Confidence            45779999995433221    11   1122     24688999998853 3344333333222    1   236789999


Q ss_pred             CCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHH
Q 030364          126 DLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVN  161 (178)
Q Consensus       126 D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  161 (178)
                      |....    -=.........++|+..++  .|++++
T Consensus       165 De~~~----~G~~l~~~~~~~~Pi~~i~--~Gq~v~  194 (211)
T d2qy9a2         165 DGTAK----GGVIFSVADQFGIPIRYIG--VGERIE  194 (211)
T ss_dssp             TTCTT----TTHHHHHHHHHCCCEEEEE--CSSSGG
T ss_pred             CCCCC----ccHHHHHHHHHCCCEEEEe--CCCCcc
Confidence            96331    1234555667888887776  555553

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=98.20  E-value=5.7e-07  Score=57.49  Aligned_cols=26  Identities=27%  Similarity=0.442  Sum_probs=23.6

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHHh
Q 030364            7 KNIQVKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus         7 ~~~~~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      +++.++|++.|++||||||+.+.|..
T Consensus         2 ~pk~~~I~i~G~~GsGKTT~~~~La~   27 (174)
T d1y63a_           2 QPKGINILITGTPGTGKTSMAEMIAA   27 (174)
T ss_dssp             CCSSCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCCEEEEEeCCCCCHHHHHHHHHH
Confidence            56789999999999999999999875

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=98.16  E-value=4.4e-06  Score=55.12  Aligned_cols=91  Identities=18%  Similarity=0.190  Sum_probs=52.5

Q ss_pred             EEEEEEeCCCchhhhc------cchhh--hcCCcEEEEEEECCCHh-HHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcc
Q 030364           59 IKFDIWDTAGQERYHS------LAPMY--YRGAAAAVVVYDITSMD-SFERAKKWVQELQRQGNPNLIMFLVANKVDLEE  129 (178)
Q Consensus        59 ~~~~i~d~~g~~~~~~------~~~~~--~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~  129 (178)
                      +.+.++||+|...+..      ....+  .-..+-+++|+|++... ..+.+...+..+      +. --+++||.|...
T Consensus        95 ~d~IlIDTaGr~~~~~~~~~~~el~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~~~~~~------~~-~~lI~TKlDet~  167 (211)
T d1j8yf2          95 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKAYDLASKFNQAS------KI-GTIIITKMDGTA  167 (211)
T ss_dssp             CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHHHHHHC------TT-EEEEEECTTSCS
T ss_pred             CceEEEecCCcCccchhhHHHHHHHHHHhhcCCceEEEEEecccCcchHHHHhhhhccc------Cc-ceEEEecccCCC
Confidence            4678999999643331      11111  22356788999988643 333332222211      11 246799999633


Q ss_pred             ccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHH
Q 030364          130 KRKVKNEEGELYAQENGLSFLETSAKSAHNVNE  162 (178)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  162 (178)
                          ..=.........++|+..++  .|+++++
T Consensus       168 ----~~G~~l~~~~~~~lPi~~it--~Gq~v~D  194 (211)
T d1j8yf2         168 ----KGGGALSAVAATGATIKFIG--TGEKIDE  194 (211)
T ss_dssp             ----CHHHHHHHHHTTTCCEEEEE--CSSSTTC
T ss_pred             ----cccHHHHHHHHHCcCEEEEe--CCCCccc
Confidence                23345556677889987777  4666643

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=98.12  E-value=7.2e-06  Score=53.93  Aligned_cols=90  Identities=13%  Similarity=0.062  Sum_probs=51.1

Q ss_pred             EEEEEEeCCCchhhhcc----chhh---h-----cCCcEEEEEEECCCH-hHHHHHHHHHHHHHHhCCCCceEEEEEeCC
Q 030364           59 IKFDIWDTAGQERYHSL----APMY---Y-----RGAAAAVVVYDITSM-DSFERAKKWVQELQRQGNPNLIMFLVANKV  125 (178)
Q Consensus        59 ~~~~i~d~~g~~~~~~~----~~~~---~-----~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~  125 (178)
                      +.+.++||+|...+...    ...+   .     ...+-.++|+|++.. +....+...+..+.    .   --+++||.
T Consensus        89 ~d~ilIDTaGr~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~~----~---~~lI~TKl  161 (207)
T d1okkd2          89 YDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKFHEAVG----L---TGVIVTKL  161 (207)
T ss_dssp             CSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHHHHHHHHHC----C---SEEEEECT
T ss_pred             CCEEEcCccccchhhHHHHHHHHHHHHHhhhcccCCCceEEEEeecccCchHHHHHHHhhhccC----C---ceEEEecc
Confidence            46779999996433321    1111   1     245678999999864 34444444434331    1   26689999


Q ss_pred             CCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHH
Q 030364          126 DLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVN  161 (178)
Q Consensus       126 D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  161 (178)
                      |... +-   =.........+.|+..++  +|++++
T Consensus       162 Det~-~~---G~~l~~~~~~~~Pi~~i~--~Gq~p~  191 (207)
T d1okkd2         162 DGTA-KG---GVLIPIVRTLKVPIKFVG--VGEGPD  191 (207)
T ss_dssp             TSSC-CC---TTHHHHHHHHCCCEEEEE--CSSSTT
T ss_pred             CCCC-Cc---cHHHHHHHHHCCCEEEEe--CCCChH
Confidence            9532 11   123445667888877666  344443

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=98.02  E-value=1.4e-06  Score=55.40  Aligned_cols=23  Identities=30%  Similarity=0.443  Sum_probs=20.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      .++|+++|+|||||||+.+.|..
T Consensus         4 ~~~I~i~G~pGsGKTTia~~La~   26 (173)
T d1rkba_           4 LPNILLTGTPGVGKTTLGKELAS   26 (173)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            57899999999999999999865

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=97.99  E-value=1.8e-05  Score=51.98  Aligned_cols=84  Identities=15%  Similarity=0.150  Sum_probs=48.1

Q ss_pred             EEEEEEeCCCchhhhcc----chhh--hcCCcEEEEEEECCCHh-HHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccc
Q 030364           59 IKFDIWDTAGQERYHSL----APMY--YRGAAAAVVVYDITSMD-SFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR  131 (178)
Q Consensus        59 ~~~~i~d~~g~~~~~~~----~~~~--~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~  131 (178)
                      +.+.++||+|....+..    ...+  ....+-+++|.|++.++ ..+.+..+++.+    ..   --+++||.|...  
T Consensus        93 ~d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a~~~~~~~~~~~~f~~~~----~~---~~~I~TKlDe~~--  163 (207)
T d1ls1a2          93 RDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKV----GV---TGLVLTKLDGDA--  163 (207)
T ss_dssp             CCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHHHHHHHHHHT----CC---CEEEEECGGGCS--
T ss_pred             CcceeecccccchhhhhhHHHHHHHHhhcCCceEEEEeccccchhHHHHHHHHHhhC----CC---CeeEEeecCccc--
Confidence            46779999996433221    1111  23567899999988654 333332222222    11   257899999532  


Q ss_pred             ccCHHHHHHHHHHcCCeEEEEe
Q 030364          132 KVKNEEGELYAQENGLSFLETS  153 (178)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~S  153 (178)
                        ..-.....+...+.|+..++
T Consensus       164 --~~G~~l~~~~~~~~Pi~~i~  183 (207)
T d1ls1a2         164 --RGGAALSARHVTGKPIYFAG  183 (207)
T ss_dssp             --SCHHHHHHHHHHCCCEEEEC
T ss_pred             --cchHHHHHHHHHCCCEEEEe
Confidence              12344555667888876664

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.99  E-value=1.6e-06  Score=55.82  Aligned_cols=23  Identities=26%  Similarity=0.473  Sum_probs=20.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      .-+|+|.|++|+|||||+++|..
T Consensus         7 ~K~I~i~G~~GsGKTTla~~La~   29 (192)
T d1lw7a2           7 AKTVAILGGESSGKSVLVNKLAA   29 (192)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            45899999999999999999875

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=97.96  E-value=2.9e-06  Score=55.14  Aligned_cols=25  Identities=36%  Similarity=0.499  Sum_probs=22.2

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHHh
Q 030364            8 NIQVKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus         8 ~~~~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      ++.++|+++|+|||||||+.+.|..
T Consensus         1 p~~~riil~G~pGSGKsT~a~~La~   25 (190)
T d1ak2a1           1 PKGVRAVLLGPPGAGKGTQAPKLAK   25 (190)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHH
Confidence            3578999999999999999998874

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.95  E-value=2.7e-06  Score=54.72  Aligned_cols=22  Identities=36%  Similarity=0.555  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      +||+|+|+|||||||+.+.|..
T Consensus         1 m~I~i~G~pGSGKsT~a~~La~   22 (182)
T d1zina1           1 MNLVLMGLPGAGKGTQAEKIVA   22 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            6899999999999999998865

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=97.88  E-value=4.1e-06  Score=54.01  Aligned_cols=23  Identities=35%  Similarity=0.533  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      |+|+++|+|||||||+.+.|...
T Consensus         1 M~I~i~G~pGSGKsT~a~~La~~   23 (182)
T d1s3ga1           1 MNIVLMGLPGAGKGTQADRIVEK   23 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            68999999999999999988753

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=97.87  E-value=6.1e-06  Score=53.64  Aligned_cols=26  Identities=23%  Similarity=0.445  Sum_probs=23.2

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHHh
Q 030364            7 KNIQVKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus         7 ~~~~~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      +.+.++|+++|+|||||||+...|..
T Consensus         3 ~~r~mrIiliG~PGSGKtT~a~~La~   28 (189)
T d2ak3a1           3 SARLLRAAIMGAPGSGKGTVSSRITK   28 (189)
T ss_dssp             SSCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcceeEEEECCCCCCHHHHHHHHHH
Confidence            34678999999999999999999875

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.86  E-value=4.7e-06  Score=53.62  Aligned_cols=23  Identities=26%  Similarity=0.609  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      +||+++|+|||||||+.+.|...
T Consensus         1 m~I~i~G~pGsGKsT~a~~La~~   23 (181)
T d2cdna1           1 MRVLLLGPPGAGKGTQAVKLAEK   23 (181)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            68999999999999999998753

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.85  E-value=4.6e-06  Score=52.80  Aligned_cols=21  Identities=33%  Similarity=0.485  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 030364           12 KLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~   32 (178)
                      -++|+|.+|||||||+++|..
T Consensus         4 vi~itG~~GSGKTTL~~~L~~   24 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIP   24 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            488999999999999999985

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.83  E-value=5.4e-06  Score=51.60  Aligned_cols=20  Identities=25%  Similarity=0.589  Sum_probs=18.1

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q 030364           13 LVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        13 i~v~G~~~~GKStl~~~l~~   32 (178)
                      |++.|+|||||||+++.|..
T Consensus         5 Iii~G~pGsGKTTla~~L~~   24 (152)
T d1ly1a_           5 ILTIGCPGSGKSTWAREFIA   24 (152)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            77899999999999999865

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.82  E-value=7.8e-06  Score=53.16  Aligned_cols=23  Identities=26%  Similarity=0.447  Sum_probs=20.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      ...|+|+|+|||||||+.+.|..
T Consensus         6 p~iI~i~G~pGSGKsT~a~~La~   28 (194)
T d1qf9a_           6 PNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            45789999999999999999875

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.82  E-value=5.6e-06  Score=53.18  Aligned_cols=22  Identities=23%  Similarity=0.412  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      +||+++|+|||||||..+.|..
T Consensus         1 m~I~i~G~pGSGKsT~~~~La~   22 (179)
T d1e4va1           1 MRIILLGAPVAGKGTQAQFIME   22 (179)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            6899999999999999988864

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.81  E-value=2.8e-06  Score=54.74  Aligned_cols=21  Identities=33%  Similarity=0.602  Sum_probs=19.1

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q 030364           13 LVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus        13 i~v~G~~~~GKStl~~~l~~~   33 (178)
                      |+++|++|+||+||+++|...
T Consensus         6 ivl~Gpsg~GK~tl~~~L~~~   26 (178)
T d1kgda_           6 LVLLGAHGVGRRHIKNTLITK   26 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            888999999999999999854

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.78  E-value=6e-06  Score=53.55  Aligned_cols=24  Identities=17%  Similarity=0.234  Sum_probs=21.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhC
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      .++|+++|+|||||||+.+.|...
T Consensus         3 Pm~I~i~GppGsGKsT~a~~La~~   26 (189)
T d1zaka1           3 PLKVMISGAPASGKGTQCELIKTK   26 (189)
T ss_dssp             SCCEEEEESTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            568999999999999999988653

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.77  E-value=8.3e-06  Score=52.46  Aligned_cols=23  Identities=26%  Similarity=0.553  Sum_probs=21.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      .++|+++|+|||||||+.+.|..
T Consensus         2 ~mrIvl~G~pGSGKtT~a~~La~   24 (180)
T d1akya1           2 SIRMVLIGPPGAGKGTQAPNLQE   24 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            47999999999999999999875

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.77  E-value=1.1e-05  Score=51.35  Aligned_cols=26  Identities=19%  Similarity=0.294  Sum_probs=22.1

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHHh
Q 030364            7 KNIQVKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus         7 ~~~~~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      ..+.+-|.++|.|||||||+.+.|..
T Consensus         3 ~~~g~~I~l~G~~GsGKTTia~~La~   28 (183)
T d1m8pa3           3 ATQGFTIFLTGYMNSGKDAIARALQV   28 (183)
T ss_dssp             TTCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            34578899999999999999988864

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.76  E-value=7.5e-06  Score=51.88  Aligned_cols=22  Identities=27%  Similarity=0.526  Sum_probs=18.8

Q ss_pred             eEE-EEEcCCCCCHHHHHHHHHh
Q 030364           11 VKL-VLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        11 ~~i-~v~G~~~~GKStl~~~l~~   32 (178)
                      ||| .|+|.+|||||||+++|..
T Consensus         1 Mkii~I~G~~gSGKTTli~~l~~   23 (165)
T d1xjca_           1 MNVWQVVGYKHSGKTTLMEKWVA   23 (165)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEEeCCCCCHHHHHHHHHH
Confidence            355 5999999999999999875

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.70  E-value=1.1e-05  Score=51.03  Aligned_cols=21  Identities=24%  Similarity=0.479  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 030364           12 KLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~   32 (178)
                      -|++.|+|||||||+.+.|..
T Consensus         4 lI~i~G~~GsGKTTva~~L~~   24 (176)
T d2bdta1           4 LYIITGPAGVGKSTTCKRLAA   24 (176)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            378889999999999999875

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.65  E-value=1.4e-05  Score=52.38  Aligned_cols=21  Identities=24%  Similarity=0.425  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 030364           12 KLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~   32 (178)
                      =|+++|.|||||||+.++|..
T Consensus         4 li~l~GlpgsGKSTla~~L~~   24 (213)
T d1bifa1           4 LIVMVGLPARGKTYISKKLTR   24 (213)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478899999999999999874

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.64  E-value=1.4e-05  Score=49.99  Aligned_cols=21  Identities=29%  Similarity=0.669  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 030364           12 KLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~   32 (178)
                      +|+++|++||||||+.+.|..
T Consensus         4 ~I~l~G~~GsGKSTvak~La~   24 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQ   24 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            699999999999999998875

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.63  E-value=4.1e-06  Score=54.32  Aligned_cols=21  Identities=33%  Similarity=0.645  Sum_probs=19.2

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q 030364           13 LVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus        13 i~v~G~~~~GKStl~~~l~~~   33 (178)
                      |+|+|++||||+||++.|...
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~   24 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999999754

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.61  E-value=1.7e-05  Score=50.66  Aligned_cols=21  Identities=33%  Similarity=0.555  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 030364           12 KLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~   32 (178)
                      +|++.|++|+|||||+..+..
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~~   23 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKASE   23 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            589999999999999998875

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.58  E-value=1.9e-05  Score=49.96  Aligned_cols=22  Identities=41%  Similarity=0.573  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      .+|+++|.+||||||+.+.|..
T Consensus         2 p~IvliG~~G~GKSTig~~La~   23 (165)
T d2iyva1           2 PKAVLVGLPGSGKSTIGRRLAK   23 (165)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999988864

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.57  E-value=2.7e-05  Score=50.44  Aligned_cols=22  Identities=32%  Similarity=0.561  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      +.|+|+|+|||||||....|..
T Consensus         2 ~iI~i~GppGSGKsT~a~~La~   23 (194)
T d1teva_           2 LVVFVLGGPGAGKGTQCARIVE   23 (194)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            6799999999999999998875

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.56  E-value=3.8e-05  Score=48.99  Aligned_cols=24  Identities=21%  Similarity=0.318  Sum_probs=20.2

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      ...=|+++|.|||||||+.+.+..
T Consensus        13 ~p~liil~G~pGsGKST~a~~l~~   36 (172)
T d1yj5a2          13 NPEVVVAVGFPGAGKSTFIQEHLV   36 (172)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHTG
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            355788899999999999998864

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=97.56  E-value=2.3e-05  Score=49.42  Aligned_cols=21  Identities=38%  Similarity=0.725  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 030364           12 KLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~   32 (178)
                      +|+++|++||||||+.+.|..
T Consensus         2 ~I~liG~~GsGKsTi~k~La~   22 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAK   22 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998864

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=97.54  E-value=2.6e-05  Score=50.09  Aligned_cols=22  Identities=23%  Similarity=0.460  Sum_probs=18.2

Q ss_pred             eEEEE-EcCCCCCHHHHHHHHHh
Q 030364           11 VKLVL-LGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        11 ~~i~v-~G~~~~GKStl~~~l~~   32 (178)
                      |||+| .|.+||||||+++.|..
T Consensus         1 mkiivi~G~~GsGKTT~~~~La~   23 (194)
T d1nksa_           1 MKIGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            46655 69999999999998864

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.52  E-value=4.1e-05  Score=49.69  Aligned_cols=25  Identities=28%  Similarity=0.446  Sum_probs=21.1

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHHh
Q 030364            8 NIQVKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus         8 ~~~~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      ++.--|+++|+|||||||+...|..
T Consensus         6 ~~~~iI~i~GppGSGKsT~a~~La~   30 (196)
T d1ukza_           6 DQVSVIFVLGGPGAGKGTQCEKLVK   30 (196)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHH
Confidence            3355688899999999999999875

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.51  E-value=2.9e-05  Score=49.03  Aligned_cols=21  Identities=29%  Similarity=0.507  Sum_probs=18.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 030364           12 KLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~   32 (178)
                      =++++|++||||||+.+.|..
T Consensus         8 iivl~G~~GsGKsT~a~~La~   28 (171)
T d1knqa_           8 IYVLMGVSGSGKSAVASEVAH   28 (171)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            355689999999999999875

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=97.51  E-value=2.7e-05  Score=52.39  Aligned_cols=23  Identities=22%  Similarity=0.335  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      =+++|+|++|||||||++.+.+-
T Consensus        30 e~vaIvG~sGsGKSTLl~ll~gl   52 (241)
T d2pmka1          30 EVIGIVGRSGSGKSTLTKLIQRF   52 (241)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CEEEEECCCCCCHHHHHHHHHhc
Confidence            37999999999999999988763

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.51  E-value=9.7e-05  Score=50.68  Aligned_cols=62  Identities=18%  Similarity=0.121  Sum_probs=39.1

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHHhCcCCCCc-----cCceeeeEEEEEEEe-CCeEEEEEEEeCCCch
Q 030364            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQ-----ESTIGAAFFTQVLSL-NEVTIKFDIWDTAGQE   70 (178)
Q Consensus         7 ~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~-----~~~~~~~~~~~~~~~-~~~~~~~~i~d~~g~~   70 (178)
                      ..+..=|.|+|+.++|||+|+|.|++....-..     ..|.|.  ....... .+....+.++|+.|..
T Consensus        29 ~~~v~vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Gi--w~~~~~~~~~~~~~~~~lDteG~~   96 (277)
T d1f5na2          29 TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGI--WMWCVPHPKKPGHILVLLDTEGLG   96 (277)
T ss_dssp             CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSE--EEEEEECSSSTTCEEEEEEECCBC
T ss_pred             CCCEEEEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCce--EEEEeeccCCCCceEEEEeccccc
Confidence            345667889999999999999999976532111     122222  1212222 3445567899999964

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.49  E-value=2.8e-05  Score=50.86  Aligned_cols=22  Identities=27%  Similarity=0.321  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 030364           12 KLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      .++++|+.|||||||++.+.+-
T Consensus        29 i~~l~G~NGsGKSTLl~~i~gl   50 (200)
T d1sgwa_          29 VVNFHGPNGIGKTTLLKTISTY   50 (200)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCChHHHHHHHHhcc
Confidence            5789999999999999999763

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.46  E-value=3.4e-05  Score=48.89  Aligned_cols=20  Identities=30%  Similarity=0.594  Sum_probs=18.0

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q 030364           13 LVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        13 i~v~G~~~~GKStl~~~l~~   32 (178)
                      |++.|++||||||+.+.|..
T Consensus         7 I~l~G~~GsGKSTia~~La~   26 (176)
T d1zp6a1           7 LLLSGHPGSGKSTIAEALAN   26 (176)
T ss_dssp             EEEEECTTSCHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            77889999999999998865

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=97.46  E-value=3.9e-05  Score=48.58  Aligned_cols=20  Identities=25%  Similarity=0.456  Sum_probs=17.5

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q 030364           13 LVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        13 i~v~G~~~~GKStl~~~l~~   32 (178)
                      |++.|++||||||+.+.|..
T Consensus         6 I~l~G~~GsGKsTva~~L~~   25 (178)
T d1qhxa_           6 IILNGGSSAGKSGIVRCLQS   25 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            55669999999999999875

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.46  E-value=3.7e-05  Score=51.28  Aligned_cols=22  Identities=27%  Similarity=0.404  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 030364           12 KLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      -++++|++|||||||++.+.+-
T Consensus        28 i~~liGpsGsGKSTLl~~i~Gl   49 (232)
T d2awna2          28 FVVFVGPSGCGKSTLLRMIAGL   49 (232)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCChHHHHHHHHhcC
Confidence            5789999999999999988763

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=97.46  E-value=0.00026  Score=44.18  Aligned_cols=27  Identities=33%  Similarity=0.512  Sum_probs=22.3

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCcC
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVKGQF   35 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~~~~   35 (178)
                      +..-|++-|+-|||||||++.+...--
T Consensus        32 ~g~ii~L~G~LGaGKTtfvr~~~~~lg   58 (158)
T d1htwa_          32 KAIMVYLNGDLGAGKTTLTRGMLQGIG   58 (158)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             CCeEEEEecCCCccHHHHHHHHHhhcc
Confidence            355688899999999999999887543

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.45  E-value=5.2e-05  Score=48.89  Aligned_cols=26  Identities=23%  Similarity=0.220  Sum_probs=22.0

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHHh
Q 030364            7 KNIQVKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus         7 ~~~~~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      ....+-|.|.|++|||||||.+.|..
T Consensus        19 ~~~~~iIgI~G~~GSGKSTla~~L~~   44 (198)
T d1rz3a_          19 TAGRLVLGIDGLSRSGKTTLANQLSQ   44 (198)
T ss_dssp             CSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            34466788999999999999999864

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.45  E-value=3.9e-05  Score=48.99  Aligned_cols=21  Identities=24%  Similarity=0.248  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 030364           12 KLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~   32 (178)
                      -|+|.|.+||||||+++.|..
T Consensus         3 iI~i~G~~GsGKsT~~~~L~~   23 (190)
T d1khta_           3 VVVVTGVPGVGSTTSSQLAMD   23 (190)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            367789999999999998854

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.45  E-value=4e-05  Score=49.20  Aligned_cols=21  Identities=29%  Similarity=0.412  Sum_probs=18.6

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q 030364           13 LVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus        13 i~v~G~~~~GKStl~~~l~~~   33 (178)
                      |+++|++|||||||++.|...
T Consensus         5 ivl~GpsG~GK~tl~~~L~~~   25 (182)
T d1znwa1           5 VVLSGPSAVGKSTVVRCLRER   25 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHhh
Confidence            678899999999999998754

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=97.44  E-value=3.8e-05  Score=51.69  Aligned_cols=22  Identities=18%  Similarity=0.377  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      =.++++|++|||||||++.+.+
T Consensus        29 e~vaivG~sGsGKSTLl~ll~g   50 (242)
T d1mv5a_          29 SIIAFAGPSGGGKSTIFSLLER   50 (242)
T ss_dssp             EEEEEECCTTSSHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3789999999999999998875

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.42  E-value=4.5e-05  Score=51.09  Aligned_cols=23  Identities=30%  Similarity=0.340  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCc
Q 030364           12 KLVLLGDMGTGKTSLVLRFVKGQ   34 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~~~   34 (178)
                      -++++|++|||||||++.+.+-.
T Consensus        26 ~~~liGpnGaGKSTll~~i~Gl~   48 (240)
T d2onka1          26 YCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            35689999999999999988743

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.41  E-value=3.8e-05  Score=52.02  Aligned_cols=21  Identities=24%  Similarity=0.570  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 030364           12 KLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~   32 (178)
                      .++|+|++|||||||++.+.+
T Consensus        43 ~iaivG~sGsGKSTLl~ll~g   63 (253)
T d3b60a1          43 TVALVGRSGSGKSTIASLITR   63 (253)
T ss_dssp             EEEEEECTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCChHHHHHHHHhc
Confidence            799999999999999998875

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.40  E-value=4.1e-05  Score=51.04  Aligned_cols=22  Identities=18%  Similarity=0.277  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 030364           12 KLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      .+.++|++|||||||++.+.+-
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~gl   54 (230)
T d1l2ta_          33 FVSIMGPSGSGKSTMLNIIGCL   54 (230)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCcchhhHhccCC
Confidence            5789999999999999977653

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=97.40  E-value=0.0002  Score=47.87  Aligned_cols=23  Identities=30%  Similarity=0.420  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCc
Q 030364           12 KLVLLGDMGTGKTSLVLRFVKGQ   34 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~~~   34 (178)
                      .+.++|++|||||||++.+.+-.
T Consensus        31 ~~~liG~sGaGKSTll~~i~gl~   53 (240)
T d1g2912          31 FMILLGPSGCGKTTTLRMIAGLE   53 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhcCC
Confidence            57899999999999999888643

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.40  E-value=0.00067  Score=45.34  Aligned_cols=23  Identities=30%  Similarity=0.554  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      .++++.|++|+||||+++.+...
T Consensus        34 ~~lll~Gp~G~GKTt~~~~la~~   56 (252)
T d1sxje2          34 PHLLLYGPNGTGKKTRCMALLES   56 (252)
T ss_dssp             CCEEEECSTTSSHHHHHHTHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHh
Confidence            36899999999999999988764

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.40  E-value=4.5e-05  Score=51.62  Aligned_cols=21  Identities=24%  Similarity=0.434  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 030364           12 KLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~   32 (178)
                      .++++|++|||||||++.+.+
T Consensus        42 ~vaivG~sGsGKSTLl~li~g   62 (251)
T d1jj7a_          42 VTALVGPNGSGKSTVAALLQN   62 (251)
T ss_dssp             EEEEECSTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            789999999999999998875

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.38  E-value=5.2e-05  Score=50.77  Aligned_cols=22  Identities=41%  Similarity=0.436  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 030364           12 KLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      -+.++|++|||||||++.+.+-
T Consensus        34 ~~~liGpsGaGKSTLl~~i~Gl   55 (239)
T d1v43a3          34 FLVLLGPSGCGKTTTLRMIAGL   55 (239)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCChHHHHHHHHHcC
Confidence            5789999999999999988864

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.38  E-value=2.4e-05  Score=50.52  Aligned_cols=24  Identities=25%  Similarity=0.350  Sum_probs=20.9

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      +.+.|.++|.|||||||+.+.|..
T Consensus        18 ~g~vI~L~G~pGSGKTTiAk~La~   41 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVSMALEE   41 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            456788999999999999999864

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.37  E-value=7.4e-05  Score=50.70  Aligned_cols=24  Identities=33%  Similarity=0.436  Sum_probs=20.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhC
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      ..-|++.|+||+||||+++.+...
T Consensus        32 P~~ilL~GpPGtGKT~la~~la~~   55 (273)
T d1gvnb_          32 PTAFLLGGQPGSGKTSLRSAIFEE   55 (273)
T ss_dssp             CEEEEEECCTTSCTHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHH
Confidence            345889999999999999998763

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.37  E-value=5.2e-05  Score=52.15  Aligned_cols=22  Identities=36%  Similarity=0.616  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 030364           12 KLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      .++|+|++|||||||++.+.+-
T Consensus        64 ~vaivG~nGsGKSTLl~~i~Gl   85 (281)
T d1r0wa_          64 MLAITGSTGSGKTSLLMLILGE   85 (281)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCChHHHHHHHHhCC
Confidence            6899999999999999998863

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.35  E-value=5.5e-05  Score=49.03  Aligned_cols=21  Identities=24%  Similarity=0.496  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 030364           12 KLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~   32 (178)
                      -|+++|+|||||||+...|..
T Consensus        10 iI~l~G~pGSGKsT~a~~La~   30 (194)
T d3adka_          10 IIFVVGGPGSGKGTQCEKIVQ   30 (194)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478899999999999999875

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=97.35  E-value=6.3e-05  Score=47.67  Aligned_cols=21  Identities=19%  Similarity=0.450  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 030364           12 KLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~   32 (178)
                      .|+++|.+||||||+.+.|..
T Consensus         4 ~Iil~G~~GsGKSTia~~LA~   24 (170)
T d1e6ca_           4 PIFMVGARGCGMTTVGRELAR   24 (170)
T ss_dssp             CEEEESCTTSSHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            378899999999999998864

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.35  E-value=6.3e-05  Score=48.69  Aligned_cols=20  Identities=35%  Similarity=0.694  Sum_probs=18.5

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q 030364           13 LVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        13 i~v~G~~~~GKStl~~~l~~   32 (178)
                      |+|+|++|||||||++.|..
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~   22 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQ   22 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999999865

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.29  E-value=7.8e-05  Score=48.88  Aligned_cols=22  Identities=27%  Similarity=0.465  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 030364           12 KLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      =|+|+|++|||||||++.|...
T Consensus         4 livi~GPSG~GK~tl~~~L~~~   25 (205)
T d1s96a_           4 LYIVSAPSGAGKSSLIQALLKT   25 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            3778899999999999999864

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=97.29  E-value=4.3e-05  Score=50.84  Aligned_cols=23  Identities=30%  Similarity=0.401  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCc
Q 030364           12 KLVLLGDMGTGKTSLVLRFVKGQ   34 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~~~   34 (178)
                      -++++|++|||||||++.+.+-.
T Consensus        28 ~~~liGpsGaGKSTll~~l~Gl~   50 (229)
T d3d31a2          28 YFVILGPTGAGKTLFLELIAGFH   50 (229)
T ss_dssp             EEEEECCCTHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Confidence            47899999999999999998743

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=97.29  E-value=5.1e-05  Score=50.70  Aligned_cols=21  Identities=38%  Similarity=0.624  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 030364           12 KLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~   32 (178)
                      -+.++|++|+|||||++.+.+
T Consensus        27 i~~iiG~nGaGKSTLl~~l~G   47 (231)
T d1l7vc_          27 ILHLVGPNGAGKSTLLARMAG   47 (231)
T ss_dssp             EEECBCCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCcHHHHHHHHhC
Confidence            478999999999999999986

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.28  E-value=9.9e-05  Score=49.77  Aligned_cols=25  Identities=28%  Similarity=0.395  Sum_probs=21.9

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHHh
Q 030364            8 NIQVKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus         8 ~~~~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      .+...|++.|+||+|||++++.+.+
T Consensus        38 ~p~~~vLL~GppGtGKT~la~alA~   62 (246)
T d1d2na_          38 TPLVSVLLEGPPHSGKTALAAKIAE   62 (246)
T ss_dssp             CSEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECcCCCCHHHHHHHHhh
Confidence            3456799999999999999999875

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=97.28  E-value=6.6e-05  Score=50.41  Aligned_cols=23  Identities=26%  Similarity=0.342  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCc
Q 030364           12 KLVLLGDMGTGKTSLVLRFVKGQ   34 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~~~   34 (178)
                      -+.++|++|+|||||++.+.+-.
T Consensus        34 i~~liGpnGaGKSTl~~~i~Gl~   56 (240)
T d1ji0a_          34 IVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            47899999999999999988643

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=97.28  E-value=9.5e-05  Score=49.41  Aligned_cols=25  Identities=32%  Similarity=0.401  Sum_probs=21.4

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhC
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      ....+++.|+||+||||+++.+.+.
T Consensus        34 ~~~~~Ll~GPpG~GKTtla~~la~~   58 (239)
T d1ixsb2          34 PLEHLLLFGPPGLGKTTLAHVIAHE   58 (239)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHH
Confidence            3457999999999999999998753

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=97.27  E-value=6.3e-05  Score=50.42  Aligned_cols=22  Identities=23%  Similarity=0.277  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 030364           12 KLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      -+.++|++|||||||++.+.+-
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~Gl   54 (240)
T d3dhwc1          33 IYGVIGASGAGKSTLIRCVNLL   54 (240)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHcCC
Confidence            5789999999999999988763

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.27  E-value=9.4e-05  Score=48.78  Aligned_cols=24  Identities=17%  Similarity=0.360  Sum_probs=21.1

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      +.+.|+|-|+|||||||....|..
T Consensus         2 k~i~IaIdGp~GsGKgT~ak~La~   25 (223)
T d1q3ta_           2 KTIQIAIDGPASSGKSTVAKIIAK   25 (223)
T ss_dssp             CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            357889999999999999998875

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=97.22  E-value=0.00011  Score=49.09  Aligned_cols=23  Identities=30%  Similarity=0.379  Sum_probs=20.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      ...+++.|+||+||||+++.+..
T Consensus        35 ~~~~L~~GPpGtGKT~lA~~la~   57 (238)
T d1in4a2          35 LDHVLLAGPPGLGKTTLAHIIAS   57 (238)
T ss_dssp             CCCEEEESSTTSSHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHh
Confidence            34799999999999999998875

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=97.22  E-value=8.7e-05  Score=49.75  Aligned_cols=23  Identities=26%  Similarity=0.260  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCc
Q 030364           12 KLVLLGDMGTGKTSLVLRFVKGQ   34 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~~~   34 (178)
                      -+.++|++|+|||||++.+.+-.
T Consensus        30 i~glvG~nGaGKSTLl~~l~G~~   52 (238)
T d1vpla_          30 IFGLIGPNGAGKTTTLRIISTLI   52 (238)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57899999999999999988643

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.21  E-value=4.9e-05  Score=51.51  Aligned_cols=22  Identities=23%  Similarity=0.428  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      =+++|+|++|||||||++.+.+
T Consensus        45 e~vaivG~sGsGKSTLl~ll~g   66 (255)
T d2hyda1          45 ETVAFVGMSGGGKSTLINLIPR   66 (255)
T ss_dssp             CEEEEECSTTSSHHHHHTTTTT
T ss_pred             CEEEEECCCCCcHHHHHHHHHh
Confidence            3799999999999999987765

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=97.18  E-value=0.0002  Score=47.91  Aligned_cols=22  Identities=27%  Similarity=0.430  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 030364           12 KLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      .+.++|++|||||||++.+.+-
T Consensus        33 ~~~iiG~sGsGKSTll~~i~gl   54 (242)
T d1oxxk2          33 RFGILGPSGAGKTTFMRIIAGL   54 (242)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTS
T ss_pred             EEEEECCCCCcHHHHHHHHHcC
Confidence            6899999999999999998864

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.17  E-value=0.0001  Score=49.96  Aligned_cols=22  Identities=23%  Similarity=0.392  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 030364           12 KLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      -+.++|++|||||||++.+.+-
T Consensus        32 i~~liG~nGaGKSTLl~~i~Gl   53 (254)
T d1g6ha_          32 VTLIIGPNGSGKSTLINVITGF   53 (254)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHHCC
Confidence            4789999999999999999874

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.15  E-value=0.00011  Score=49.80  Aligned_cols=22  Identities=18%  Similarity=0.347  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 030364           12 KLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      .+.++|++|||||||++.+.+-
T Consensus        30 i~~iiG~sGsGKSTLl~~i~Gl   51 (258)
T d1b0ua_          30 VISIIGSSGSGKSTFLRCINFL   51 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHHcC
Confidence            5789999999999999998763

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=97.14  E-value=0.00011  Score=51.58  Aligned_cols=23  Identities=22%  Similarity=0.460  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      .+|+|.|++||||||+++.|...
T Consensus       167 ~nili~G~tgSGKTT~l~al~~~  189 (323)
T d1g6oa_         167 KNVIVCGGTGSGKTTYIKSIMEF  189 (323)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGGG
T ss_pred             CCEEEEeeccccchHHHHHHhhh
Confidence            47999999999999999999853

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.13  E-value=0.00014  Score=46.98  Aligned_cols=28  Identities=25%  Similarity=0.525  Sum_probs=23.0

Q ss_pred             CCCCceeEEEEEcCCCCCHHHHHHHHHh
Q 030364            5 SNKNIQVKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus         5 ~~~~~~~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      ....+.+-|+|-|..||||||+++.|..
T Consensus         4 ~~~~kp~~I~ieG~~GsGKTTl~~~L~~   31 (197)
T d2vp4a1           4 AEGTQPFTVLIEGNIGSGKTTYLNHFEK   31 (197)
T ss_dssp             TTTCCCEEEEEECSTTSCHHHHHHTTGG
T ss_pred             cCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence            3444567899999999999999998864

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.11  E-value=0.00021  Score=46.82  Aligned_cols=26  Identities=19%  Similarity=0.333  Sum_probs=22.2

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHHh
Q 030364            7 KNIQVKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus         7 ~~~~~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      .++.+-|.+.|.||||||||.+.|..
T Consensus        21 ~~kg~vIwltGlsGsGKTTia~~L~~   46 (208)
T d1m7ga_          21 NQRGLTIWLTGLSASGKSTLAVELEH   46 (208)
T ss_dssp             TSSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            34567899999999999999999864

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=97.09  E-value=0.00022  Score=46.06  Aligned_cols=24  Identities=33%  Similarity=0.560  Sum_probs=20.7

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      .+-+++++|+||+|||+++..|..
T Consensus        42 ~k~n~lLvG~pGVGKTalv~~LA~   65 (195)
T d1jbka_          42 TKNNPVLIGEPGVGKTAIVEGLAQ   65 (195)
T ss_dssp             SSCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCCeEEEecCCcccHHHHHHHHH
Confidence            345899999999999999988765

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.06  E-value=0.00021  Score=47.46  Aligned_cols=22  Identities=32%  Similarity=0.552  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      ..+++.|++|+||||+++.+..
T Consensus        46 ~~lll~Gp~G~GKTtla~~iak   67 (231)
T d1iqpa2          46 PHLLFAGPPGVGKTTAALALAR   67 (231)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHH
Confidence            3689999999999999998875

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=97.02  E-value=0.00023  Score=48.46  Aligned_cols=25  Identities=24%  Similarity=0.369  Sum_probs=21.1

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhC
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      .+-+++++|+||+|||++++.|...
T Consensus        38 ~k~n~lLVG~~GvGKTalv~~la~r   62 (268)
T d1r6bx2          38 RKNNPLLVGESGVGKTAIAEGLAWR   62 (268)
T ss_dssp             SSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ccCCcEEECCCCCcHHHHHHHHHHH
Confidence            3458999999999999999887653

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.02  E-value=0.00029  Score=47.28  Aligned_cols=24  Identities=25%  Similarity=0.257  Sum_probs=20.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhC
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      ...+++.|+||+||||+++.+...
T Consensus        52 ~~~lll~GPpG~GKTt~a~~la~~   75 (253)
T d1sxja2          52 FRAAMLYGPPGIGKTTAAHLVAQE   75 (253)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            457899999999999999998863

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=97.01  E-value=0.00031  Score=47.40  Aligned_cols=25  Identities=32%  Similarity=0.339  Sum_probs=21.4

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhC
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      ..-.+++.|++|+|||++++.+...
T Consensus        42 ~~~~lll~GppGtGKT~l~~~l~~~   66 (276)
T d1fnna2          42 HYPRATLLGRPGTGKTVTLRKLWEL   66 (276)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHH
Confidence            3457999999999999999988753

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.01  E-value=0.00027  Score=46.26  Aligned_cols=23  Identities=22%  Similarity=0.404  Sum_probs=19.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      .+-|+|.|++|||||||.+.|..
T Consensus         2 P~iIgI~G~~gSGKSTla~~L~~   24 (213)
T d1uj2a_           2 PFLIGVSGGTASGKSSVCAKIVQ   24 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            35688999999999999998854

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.97  E-value=0.00023  Score=49.54  Aligned_cols=24  Identities=29%  Similarity=0.553  Sum_probs=21.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhC
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      .-.++++||||+|||.|.+++...
T Consensus        49 ~~~iLl~GPpG~GKT~lAkalA~~   72 (309)
T d1ofha_          49 PKNILMIGPTGVGKTEIARRLAKL   72 (309)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHhhc
Confidence            457899999999999999998753

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=96.97  E-value=0.00016  Score=49.13  Aligned_cols=22  Identities=36%  Similarity=0.383  Sum_probs=18.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 030364           12 KLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      -+++.|+||+|||++++.+...
T Consensus        48 ~l~l~GppGtGKT~l~~~l~~~   69 (287)
T d1w5sa2          48 IYGSIGRVGIGKTTLAKFTVKR   69 (287)
T ss_dssp             EEECTTCCSSSHHHHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHHHH
Confidence            3455699999999999998753

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=96.91  E-value=0.0003  Score=46.15  Aligned_cols=21  Identities=24%  Similarity=0.414  Sum_probs=18.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 030364           12 KLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~   32 (178)
                      =|+|.|+|||||+|+...|..
T Consensus         5 iI~I~GppGSGKgT~ak~La~   25 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMAE   25 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            467779999999999998875

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=96.89  E-value=0.00035  Score=44.89  Aligned_cols=23  Identities=17%  Similarity=0.473  Sum_probs=20.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      .+-|.|.|.+||||||+++.|..
T Consensus         3 p~IIgitG~~gSGKstva~~l~~   25 (191)
T d1uf9a_           3 PIIIGITGNIGSGKSTVAALLRS   25 (191)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            57789999999999999998864

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.85  E-value=0.00039  Score=45.18  Aligned_cols=22  Identities=27%  Similarity=0.434  Sum_probs=19.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      +-|+|-|..||||||+++.|..
T Consensus         1 mlI~ieG~dGsGKST~~~~L~~   22 (208)
T d1gsia_           1 MLIAIEGVDGAGKRTLVEKLSG   22 (208)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3588999999999999998764

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=96.83  E-value=0.00032  Score=47.39  Aligned_cols=22  Identities=27%  Similarity=0.280  Sum_probs=19.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      -.|+|.|++|+|||||++++..
T Consensus        30 ~~i~i~G~~G~GKTsLl~~~~~   51 (283)
T d2fnaa2          30 PITLVLGLRRTGKSSIIKIGIN   51 (283)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEEcCCCCcHHHHHHHHHH
Confidence            3578889999999999998875

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=96.83  E-value=0.00037  Score=46.87  Aligned_cols=23  Identities=30%  Similarity=0.421  Sum_probs=20.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      ...|++.|+||+|||++++.+.+
T Consensus        42 ~~giLl~GppGtGKT~la~aia~   64 (247)
T d1ixza_          42 PKGVLLVGPPGVGKTHLARAVAG   64 (247)
T ss_dssp             CSEEEEECCTTSSHHHHHHHHHH
T ss_pred             CceEEEecCCCCChhHHHHHHHH
Confidence            34699999999999999999985

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.78  E-value=0.00041  Score=45.79  Aligned_cols=22  Identities=27%  Similarity=0.400  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      .++++.|++|+||||+++.+..
T Consensus        37 ~~~ll~Gp~G~GKTt~a~~la~   58 (224)
T d1sxjb2          37 PHMIISGMPGIGKTTSVHCLAH   58 (224)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCchhhHHHHHH
Confidence            3589999999999999998764

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.77  E-value=0.0004  Score=46.01  Aligned_cols=23  Identities=39%  Similarity=0.611  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      .++++.|++|+||||+++.+...
T Consensus        34 ~~lll~Gp~G~GKTtl~~~i~~~   56 (237)
T d1sxjd2          34 PHMLFYGPPGTGKTSTILALTKE   56 (237)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCChHHHHHHHHHH
Confidence            35899999999999999998753

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.74  E-value=0.00058  Score=46.21  Aligned_cols=24  Identities=29%  Similarity=0.396  Sum_probs=21.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhC
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      ...+++.|+||+|||++++.+...
T Consensus        38 ~~giLL~GppGtGKT~l~~ala~~   61 (258)
T d1e32a2          38 PRGILLYGPPGTGKTLIARAVANE   61 (258)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CceeEEecCCCCCchHHHHHHHHH
Confidence            456999999999999999998863

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=96.74  E-value=0.028  Score=37.57  Aligned_cols=89  Identities=15%  Similarity=0.184  Sum_probs=51.7

Q ss_pred             EEEEEEeCCCchhhhcc-chhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCC-CCce-EEEEEeCCCCccccccCH
Q 030364           59 IKFDIWDTAGQERYHSL-APMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGN-PNLI-MFLVANKVDLEEKRKVKN  135 (178)
Q Consensus        59 ~~~~i~d~~g~~~~~~~-~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~-~ivv~nK~D~~~~~~~~~  135 (178)
                      +.+.++|+|+.-..... .......+|.++++.+. +..++.........+..... .+.+ ..++.|+.+....    .
T Consensus       116 ~D~viiD~p~~~~~~~~~~~~~~~~ad~vliv~~~-~~~sl~~~~~~~~~i~~~~~~~~~~~~~vv~N~~~~~~~----~  190 (269)
T d1cp2a_         116 LDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASG-EMMALYAANNISKGIQKYAKSGGVRLGGIICNSRKVANE----Y  190 (269)
T ss_dssp             CSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECS-SHHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSSSCC----H
T ss_pred             CCEEEeccCCccchhHHHHHHHhhccCceeeccch-hhhHHHHHHHHHHHHHhhccccceeccceEEeeecCCCc----c
Confidence            55778899864322222 22223457887777766 45667666666666655432 2333 3477899876442    3


Q ss_pred             HHHHHHHHHcCCeEEEE
Q 030364          136 EEGELYAQENGLSFLET  152 (178)
Q Consensus       136 ~~~~~~~~~~~~~~~~~  152 (178)
                      +....+.+..+.+++.+
T Consensus       191 ~~~~~~~~~~~~~~~~~  207 (269)
T d1cp2a_         191 ELLDAFAKELGSQLIHF  207 (269)
T ss_dssp             HHHHHHHHHHTCCEEEE
T ss_pred             chhhhhHhhcCCeEEEE
Confidence            44566667777766543

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=96.72  E-value=0.00062  Score=46.02  Aligned_cols=23  Identities=30%  Similarity=0.427  Sum_probs=20.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      ...+++.|+||+|||++++.+..
T Consensus        45 ~~~iLL~GppGtGKT~la~~iA~   67 (256)
T d1lv7a_          45 PKGVLMVGPPGTGKTLLAKAIAG   67 (256)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCeEEeeCCCCCCccHHHHHHHH
Confidence            34699999999999999999875

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.72  E-value=0.00047  Score=45.49  Aligned_cols=22  Identities=36%  Similarity=0.644  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 030364           12 KLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      ++++.|++|+||||+++.+...
T Consensus        37 ~lLl~Gp~G~GKttl~~~la~~   58 (227)
T d1sxjc2          37 HLLFYGPPGTGKTSTIVALARE   58 (227)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCChhHHHHHHHHH
Confidence            5899999999999999998763

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=96.69  E-value=0.00075  Score=46.80  Aligned_cols=27  Identities=15%  Similarity=0.284  Sum_probs=22.1

Q ss_pred             CCCceeEEEEEcCCCCCHHHHHHHHHh
Q 030364            6 NKNIQVKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus         6 ~~~~~~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      .....+-|.|.|++||||||+.+.|..
T Consensus        76 ~~k~P~iIGIaG~sgSGKSTla~~L~~  102 (308)
T d1sq5a_          76 GQRIPYIISIAGSVAVGKSTTARVLQA  102 (308)
T ss_dssp             -CCCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCCCEEEEEeCCCCCCCcHHHHHHHH
Confidence            345578899999999999999988754

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.67  E-value=0.0005  Score=50.20  Aligned_cols=23  Identities=30%  Similarity=0.641  Sum_probs=20.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      +-+|+++||+|||||-|+++|..
T Consensus        49 ksNILliGPTGvGKTlLAr~LAk   71 (443)
T d1g41a_          49 PKNILMIGPTGVGKTEIARRLAK   71 (443)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHH
T ss_pred             cccEEEECCCCCCHHHHHHHHHH
Confidence            44999999999999999999875

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.52  E-value=0.00086  Score=45.51  Aligned_cols=25  Identities=24%  Similarity=0.304  Sum_probs=21.4

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhC
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      +...|++.|++|+|||+|++++.+.
T Consensus        40 ~~~giLL~Gp~GtGKT~l~~ala~~   64 (265)
T d1r7ra3          40 PSKGVLFYGPPGCGKTLLAKAIANE   64 (265)
T ss_dssp             CCCEEEEBCCTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCcchhHHHHHHHH
Confidence            3456999999999999999998753

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.40  E-value=0.00099  Score=43.39  Aligned_cols=20  Identities=35%  Similarity=0.406  Sum_probs=17.5

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q 030364           13 LVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        13 i~v~G~~~~GKStl~~~l~~   32 (178)
                      |++-|..||||||+++.|..
T Consensus         5 IviEG~dGsGKsT~~~~L~~   24 (210)
T d4tmka_           5 IVIEGLEGAGKTTARNVVVE   24 (210)
T ss_dssp             EEEEECTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            67779999999999998764

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=96.34  E-value=0.0016  Score=46.24  Aligned_cols=25  Identities=20%  Similarity=0.355  Sum_probs=21.3

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHHh
Q 030364            8 NIQVKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus         8 ~~~~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      ++.-.+++.|+||+|||++...+.+
T Consensus       152 ~~~~~~~~~g~~~~gk~~~~~~~~~  176 (362)
T d1svma_         152 PKKRYWLFKGPIDSGKTTLAAALLE  176 (362)
T ss_dssp             TTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCcCeEEEECCCCCCHHHHHHHHHH
Confidence            3455789999999999999998875

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=96.32  E-value=0.0012  Score=43.04  Aligned_cols=22  Identities=27%  Similarity=0.567  Sum_probs=18.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      +-|.|.|..||||||+++.|..
T Consensus         4 ~iIgitG~igSGKStv~~~l~~   25 (208)
T d1vhta_           4 YIVALTGGIGSGKSTVANAFAD   25 (208)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEECCCcCCHHHHHHHHHH
Confidence            4577999999999999998764

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=96.27  E-value=0.0018  Score=40.96  Aligned_cols=24  Identities=29%  Similarity=0.583  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCc
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVKGQ   34 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~~~   34 (178)
                      .-|+++|++|+||||+.-.|....
T Consensus        15 ~gvl~~G~sG~GKStlal~l~~~g   38 (176)
T d1kkma_          15 LGVLITGDSGVGKSETALELVQRG   38 (176)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHTT
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHcC
Confidence            458999999999999999888654

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.27  E-value=0.0023  Score=43.81  Aligned_cols=24  Identities=17%  Similarity=0.337  Sum_probs=20.0

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHH
Q 030364            8 NIQVKLVLLGDMGTGKTSLVLRFV   31 (178)
Q Consensus         8 ~~~~~i~v~G~~~~GKStl~~~l~   31 (178)
                      ...+=|.|.|.+|||||||...+.
T Consensus        25 ~~P~iIGi~G~qGSGKSTl~~~l~   48 (286)
T d1odfa_          25 KCPLFIFFSGPQGSGKSFTSIQIY   48 (286)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCEEEEeECCCCCCHHHHHHHHH
Confidence            346788899999999999987764

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=96.24  E-value=0.0011  Score=47.42  Aligned_cols=24  Identities=33%  Similarity=0.560  Sum_probs=19.2

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      .+-+++++|+||+|||+++..|..
T Consensus        42 ~k~n~llvG~~GvGKtaiv~~la~   65 (387)
T d1qvra2          42 TKNNPVLIGEPGVGKTAIVEGLAQ   65 (387)
T ss_dssp             SCCCCEEEECTTSCHHHHHHHHHH
T ss_pred             CCCCCeEECCCCCCHHHHHHHHHH
Confidence            345679999999999999965553

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=96.23  E-value=0.00059  Score=47.83  Aligned_cols=22  Identities=32%  Similarity=0.540  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      -+|++.|+||+|||+|++++..
T Consensus        29 h~vLl~G~pG~GKT~lar~~~~   50 (333)
T d1g8pa_          29 GGVLVFGDRGTGKSTAVRALAA   50 (333)
T ss_dssp             CCEEEECCGGGCTTHHHHHHHH
T ss_pred             CeEEEECCCCccHHHHHHHHHH
Confidence            3699999999999999999864

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.22  E-value=0.0014  Score=42.74  Aligned_cols=20  Identities=30%  Similarity=0.418  Sum_probs=16.8

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q 030364           13 LVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        13 i~v~G~~~~GKStl~~~l~~   32 (178)
                      |++-|..||||||+++.|..
T Consensus         6 I~ieG~dGsGKsT~~~~L~~   25 (209)
T d1nn5a_           6 IVLEGVDRAGKSTQSRKLVE   25 (209)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            67779999999998887654

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.22  E-value=0.0015  Score=42.22  Aligned_cols=24  Identities=21%  Similarity=0.293  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCc
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVKGQ   34 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~~~   34 (178)
                      --+.|.|+||+|||+|+..+..+.
T Consensus        24 ~v~~i~G~~GsGKT~l~l~la~~~   47 (242)
T d1n0wa_          24 SITEMFGEFRTGKTQICHTLAVTC   47 (242)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHHH
Confidence            357889999999999998887644

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=96.20  E-value=0.085  Score=35.57  Aligned_cols=89  Identities=15%  Similarity=0.154  Sum_probs=47.2

Q ss_pred             EEEEEEeCCCchhhhccchhh-hcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhC-CCCceE-EEEEeCCCCccccccCH
Q 030364           59 IKFDIWDTAGQERYHSLAPMY-YRGAAAAVVVYDITSMDSFERAKKWVQELQRQG-NPNLIM-FLVANKVDLEEKRKVKN  135 (178)
Q Consensus        59 ~~~~i~d~~g~~~~~~~~~~~-~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~-ivv~nK~D~~~~~~~~~  135 (178)
                      +.+.++|+|+.-......... ...++.++++.. .+..+...+....+.+.... ..+.++ .+|.|+.+....    .
T Consensus       119 ~D~iiiD~pp~~~~~~~~~~~~~~~a~~vlv~~~-~~~~s~~~~~~~~~~i~~~~~~~~~~~~gvv~n~~~~~~~----~  193 (289)
T d2afhe1         119 LDFVFYDVLGDVVCGGFAMPIRENKAQEIYIVCS-GEMMAMYAANNISKGIVKYANSGSVRLGGLICNSRNTDRE----D  193 (289)
T ss_dssp             CSEEEEEEECSSCCTTTTHHHHTTCCCEEEEEEC-SSHHHHHHHHHHHHHHHHHHTTSCCEEEEEEEECCCCTTH----H
T ss_pred             CCeEeeccCCccCHHHHHHHHHhhccceeecccc-hhHHHHHHHHHHHHHHHhhhhcccccccceeehhhcchhh----H
Confidence            566788887653222222222 234555555544 44556666666655554432 344444 477898874332    2


Q ss_pred             HHHHHHHHHcCCeEEEE
Q 030364          136 EEGELYAQENGLSFLET  152 (178)
Q Consensus       136 ~~~~~~~~~~~~~~~~~  152 (178)
                      +....+.+..+.+++.+
T Consensus       194 ~~~~~~~~~~g~~vl~~  210 (289)
T d2afhe1         194 ELIIALANKLGTQMIHF  210 (289)
T ss_dssp             HHHHHHHHHHTSCEEEE
T ss_pred             HHHHHHHHHcCCeEEEE
Confidence            33455666677766553

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=96.18  E-value=0.0015  Score=42.36  Aligned_cols=22  Identities=32%  Similarity=0.520  Sum_probs=19.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      +-|.|.|..||||||+++.|..
T Consensus         3 ~iIgITG~igSGKStv~~~l~~   24 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFTD   24 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4588999999999999997753

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=96.17  E-value=0.00024  Score=45.76  Aligned_cols=18  Identities=39%  Similarity=0.654  Sum_probs=16.1

Q ss_pred             EEEcCCCCCHHHHHHHHH
Q 030364           14 VLLGDMGTGKTSLVLRFV   31 (178)
Q Consensus        14 ~v~G~~~~GKStl~~~l~   31 (178)
                      +|+|+.||||||++.++.
T Consensus        28 vi~G~NGsGKStil~Ai~   45 (222)
T d1qhla_          28 TLSGGNGAGKSTTMAAFV   45 (222)
T ss_dssp             HHHSCCSHHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            567999999999999875

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=96.10  E-value=0.0021  Score=40.66  Aligned_cols=25  Identities=28%  Similarity=0.505  Sum_probs=21.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCc
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVKGQ   34 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~~~   34 (178)
                      ..-|++.|++|+||||+.-.|....
T Consensus        15 g~gvli~G~sG~GKS~lal~l~~~G   39 (177)
T d1knxa2          15 GVGVLLTGRSGIGKSECALDLINKN   39 (177)
T ss_dssp             TEEEEEEESSSSSHHHHHHHHHTTT
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHcC
Confidence            3458999999999999999888644

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.09  E-value=0.002  Score=42.19  Aligned_cols=21  Identities=33%  Similarity=0.534  Sum_probs=18.9

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q 030364           13 LVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus        13 i~v~G~~~~GKStl~~~l~~~   33 (178)
                      +.+.|++|+|||.|++++.+.
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~   59 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNE   59 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            788999999999999998764

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.02  E-value=0.0034  Score=43.61  Aligned_cols=24  Identities=25%  Similarity=0.432  Sum_probs=20.6

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      +.-.++++|++|+|||.|.+.+..
T Consensus        51 p~~~~lf~Gp~GvGKT~lak~la~   74 (315)
T d1r6bx3          51 PVGSFLFAGPTGVGKTEVTVQLSK   74 (315)
T ss_dssp             CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CceEEEEECCCcchhHHHHHHHHh
Confidence            344789999999999999999875

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.99  E-value=0.0011  Score=45.63  Aligned_cols=18  Identities=22%  Similarity=0.543  Sum_probs=16.2

Q ss_pred             EEEcCCCCCHHHHHHHHH
Q 030364           14 VLLGDMGTGKTSLVLRFV   31 (178)
Q Consensus        14 ~v~G~~~~GKStl~~~l~   31 (178)
                      +++|+.||||||+++++.
T Consensus        28 vlvG~NgsGKS~iL~Ai~   45 (308)
T d1e69a_          28 AIVGPNGSGKSNIIDAIK   45 (308)
T ss_dssp             EEECCTTTCSTHHHHHHH
T ss_pred             EEECCCCCcHHHHHHHHH
Confidence            688999999999999873

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.98  E-value=0.0019  Score=42.63  Aligned_cols=24  Identities=25%  Similarity=0.313  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCc
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVKGQ   34 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~~~   34 (178)
                      --++|.|+||+|||+|+..+..+.
T Consensus        35 ~~~li~G~pGsGKT~l~lq~~~~~   58 (251)
T d1szpa2          35 SITELFGEFRTGKSQLCHTLAVTC   58 (251)
T ss_dssp             SEEEEEESTTSSHHHHHHHHTTTT
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHh
Confidence            357888999999999998887543

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.95  E-value=0.0015  Score=43.24  Aligned_cols=22  Identities=23%  Similarity=0.460  Sum_probs=18.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      ..|+|-|+.||||||+++.|..
T Consensus         3 k~I~ieG~dGsGKST~~~~L~~   24 (241)
T d1p5zb_           3 KKISIEGNIAAGKSTFVNILKQ   24 (241)
T ss_dssp             EEEEEECSTTSSHHHHHTTTGG
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3577889999999999998765

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=95.94  E-value=0.0026  Score=39.95  Aligned_cols=25  Identities=32%  Similarity=0.578  Sum_probs=21.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCc
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVKGQ   34 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~~~   34 (178)
                      ..-|++.|++|+||||+.-.|....
T Consensus        15 g~gvli~G~sg~GKS~la~~l~~~g   39 (169)
T d1ko7a2          15 GVGVLITGDSGIGKSETALELIKRG   39 (169)
T ss_dssp             TEEEEEEESTTSSHHHHHHHHHHTT
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHHcC
Confidence            3468999999999999998887654

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.91  E-value=0.0023  Score=42.50  Aligned_cols=23  Identities=26%  Similarity=0.398  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCc
Q 030364           12 KLVLLGDMGTGKTSLVLRFVKGQ   34 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~~~   34 (178)
                      -++|.|+||+|||+|.-.+..+-
T Consensus        38 ~~li~G~pGsGKT~~~lq~~~~~   60 (254)
T d1pzna2          38 ITEVFGEFGSGKTQLAHTLAVMV   60 (254)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHh
Confidence            57888999999999998887543

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.91  E-value=0.0026  Score=43.31  Aligned_cols=24  Identities=25%  Similarity=0.390  Sum_probs=20.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhC
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      ..-|.|.|..|+|||||+..+.+.
T Consensus        44 ~~~v~I~GmgGiGKTtLA~~v~~~   67 (277)
T d2a5yb3          44 SFFLFLHGRAGSGKSVIASQALSK   67 (277)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHh
Confidence            446789999999999999988753

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=95.87  E-value=0.0026  Score=45.77  Aligned_cols=21  Identities=19%  Similarity=0.453  Sum_probs=19.3

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q 030364           13 LVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus        13 i~v~G~~~~GKStl~~~l~~~   33 (178)
                      |+|.|++||||||.++.++..
T Consensus       161 iLvtGpTGSGKSTTl~~~l~~  181 (401)
T d1p9ra_         161 ILVTGPTGSGKSTTLYAGLQE  181 (401)
T ss_dssp             EEEECSTTSCHHHHHHHHHHH
T ss_pred             EEEEcCCCCCccHHHHHHhhh
Confidence            889999999999999999874

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=95.85  E-value=0.0031  Score=44.69  Aligned_cols=24  Identities=29%  Similarity=0.569  Sum_probs=21.2

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      +.-+++++|++|||||-|.++|..
T Consensus        67 p~~niLfiGPTGvGKTElAk~LA~   90 (364)
T d1um8a_          67 SKSNILLIGPTGSGKTLMAQTLAK   90 (364)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcceeeeCCCCccHHHHHHHHHh
Confidence            466799999999999999999864

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=95.85  E-value=0.0013  Score=45.05  Aligned_cols=22  Identities=18%  Similarity=0.374  Sum_probs=16.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      .=|.|.|.+||||||+.++|..
T Consensus         5 pIIgIaG~SGSGKTTva~~l~~   26 (288)
T d1a7ja_           5 PIISVTGSSGAGTSTVKHTFDQ   26 (288)
T ss_dssp             CEEEEESCC---CCTHHHHHHH
T ss_pred             CEEEEECCCCCcHHHHHHHHHH
Confidence            3599999999999999998754

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.77  E-value=0.003  Score=41.77  Aligned_cols=21  Identities=29%  Similarity=0.581  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 030364           12 KLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~   32 (178)
                      -|+|=|..||||||+++.|..
T Consensus         4 ~IviEG~~GsGKST~~~~L~~   24 (241)
T d2ocpa1           4 RLSIEGNIAVGKSTFVKLLTK   24 (241)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            467779999999999999875

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=95.70  E-value=0.0032  Score=41.60  Aligned_cols=24  Identities=46%  Similarity=0.652  Sum_probs=20.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhC
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      .--++|.|+||+|||+|+..+..+
T Consensus        26 gsl~li~G~pGsGKT~l~~qia~~   49 (242)
T d1tf7a2          26 DSIILATGATGTGKTLLVSRFVEN   49 (242)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHHH
Confidence            345788899999999999888765

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.66  E-value=0.0031  Score=45.14  Aligned_cols=21  Identities=19%  Similarity=0.466  Sum_probs=17.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHH
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFV   31 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~   31 (178)
                      .++ +|+|+.|+|||+++.++.
T Consensus        26 ~l~-~i~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_          26 NFT-SIIGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             SEE-EEECSTTSSHHHHHHHHH
T ss_pred             CEE-EEECCCCCCHHHHHHHHH
Confidence            454 477999999999999874

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=95.64  E-value=0.0041  Score=43.21  Aligned_cols=20  Identities=30%  Similarity=0.474  Sum_probs=17.2

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q 030364           13 LVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        13 i~v~G~~~~GKStl~~~l~~   32 (178)
                      +++.|+||+|||.|.+.+..
T Consensus       126 ~l~~G~pG~GKT~la~ala~  145 (321)
T d1w44a_         126 VIVTGKGNSGKTPLVHALGE  145 (321)
T ss_dssp             EEEECSSSSCHHHHHHHHHH
T ss_pred             EEEECCCCccHHHHHHHHHH
Confidence            44579999999999999875

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=95.61  E-value=0.0047  Score=43.19  Aligned_cols=24  Identities=25%  Similarity=0.288  Sum_probs=21.5

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      +.++|.|=|.-|+||||+++.|..
T Consensus         5 ~~~rI~iEG~iGsGKSTl~~~L~~   28 (333)
T d1p6xa_           5 TIVRIYLDGVYGIGKSTTGRVMAS   28 (333)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHS
T ss_pred             ceEEEEEECCccCCHHHHHHHHHH
Confidence            467999999999999999998875

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=95.56  E-value=0.0043  Score=43.27  Aligned_cols=24  Identities=25%  Similarity=0.364  Sum_probs=21.1

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      ..++|.|=|+-|+||||+++.|..
T Consensus         3 ~~lrI~IEG~iGsGKTTl~~~La~   26 (329)
T d1e2ka_           3 TLLRVYIDGPHGMGKTTTTQLLVA   26 (329)
T ss_dssp             EEEEEEECSCTTSSHHHHHHHHTC
T ss_pred             CceEEEEECCcCCCHHHHHHHHHH
Confidence            467899999999999999998863

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.51  E-value=0.0047  Score=40.92  Aligned_cols=24  Identities=25%  Similarity=0.274  Sum_probs=20.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhC
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      .--++|.|+||+|||+|...+..+
T Consensus        37 G~~~~i~G~~GsGKT~lalq~~~~   60 (258)
T d1v5wa_          37 MAITEAFGEFRTGKTQLSHTLCVT   60 (258)
T ss_dssp             SEEEEEECCTTCTHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHH
Confidence            345788999999999999988754

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.48  E-value=0.0045  Score=40.41  Aligned_cols=21  Identities=29%  Similarity=0.232  Sum_probs=18.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 030364           12 KLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~   32 (178)
                      =|++-|..||||||+++.|..
T Consensus         5 ~I~iEG~DGsGKST~~~~L~~   25 (214)
T d1tmka_           5 LILIEGLDRTGKTTQCNILYK   25 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            378889999999999988764

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=95.47  E-value=0.0032  Score=43.96  Aligned_cols=25  Identities=28%  Similarity=0.409  Sum_probs=22.1

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhC
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      ..++|.|=|.-|+||||+++.|...
T Consensus         4 ~~lrI~IEG~iGsGKSTl~~~L~~~   28 (331)
T d1osna_           4 GVLRIYLDGAYGIGKTTAAEEFLHH   28 (331)
T ss_dssp             EEEEEEEEESSSSCTTHHHHHHHHT
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHH
Confidence            4678999999999999999998753

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=95.43  E-value=0.0051  Score=39.63  Aligned_cols=25  Identities=28%  Similarity=0.413  Sum_probs=21.2

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHHh
Q 030364            8 NIQVKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus         8 ~~~~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      +++-.+++.|++++|||.++..+..
T Consensus        51 PKkn~i~~~GP~~TGKS~f~~sl~~   75 (205)
T d1tuea_          51 PKKNCLVFCGPANTGKSYFGMSFIH   75 (205)
T ss_dssp             TTCSEEEEESCGGGCHHHHHHHHHH
T ss_pred             CCceEEEEECCCCccHHHHHHHHHH
Confidence            4456788899999999999998875

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.41  E-value=0.0056  Score=39.73  Aligned_cols=21  Identities=19%  Similarity=0.399  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 030364           12 KLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~   32 (178)
                      -+++.|++|+||||+++.+..
T Consensus        26 ~lLl~Gp~G~GKtt~a~~~a~   46 (207)
T d1a5ta2          26 ALLIQALPGMGDDALIYALSR   46 (207)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            489999999999999998765

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=95.39  E-value=0.0047  Score=40.68  Aligned_cols=24  Identities=21%  Similarity=0.267  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCc
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVKGQ   34 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~~~   34 (178)
                      --++|.|+||+|||+|+..+..+-
T Consensus        35 ~l~~i~G~~G~GKT~~~l~~a~~~   58 (258)
T d2i1qa2          35 SVTEFAGVFGSGKTQIMHQSCVNL   58 (258)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHHH
Confidence            346788999999999999887543

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.38  E-value=0.0055  Score=40.59  Aligned_cols=21  Identities=33%  Similarity=0.494  Sum_probs=18.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 030364           12 KLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~   32 (178)
                      .+++.|++|+||||+++.+..
T Consensus        36 ~~Ll~Gp~G~GKtt~a~~~~~   56 (239)
T d1njfa_          36 AYLFSGTRGVGKTSIARLLAK   56 (239)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHH
Confidence            478899999999999988764

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.32  E-value=0.0063  Score=35.76  Aligned_cols=26  Identities=12%  Similarity=0.235  Sum_probs=22.7

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHHh
Q 030364            7 KNIQVKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus         7 ~~~~~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      .++.+.|.+-|.+|+|||++.+.|..
T Consensus         3 ~kqgf~i~~tg~~~~gk~~ia~al~~   28 (122)
T d1g8fa3           3 PKQGFSIVLGNSLTVSREQLSIALLS   28 (122)
T ss_dssp             GGCCEEEEECTTCCSCHHHHHHHHHH
T ss_pred             CccceEEEEeCCCCCCHHHHHHHHHH
Confidence            34588999999999999999999864

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=95.24  E-value=0.0067  Score=40.08  Aligned_cols=21  Identities=19%  Similarity=0.178  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 030364           12 KLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~   32 (178)
                      -|.+.|..||||||+.+.|..
T Consensus         3 iIgiTG~igSGKsTva~~l~e   23 (241)
T d1deka_           3 LIFLSGVKRSGKDTTADFIMS   23 (241)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            477889999999999998864

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=95.20  E-value=0.0052  Score=44.25  Aligned_cols=24  Identities=29%  Similarity=0.432  Sum_probs=20.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhC
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      ..+++|+|.+|+|||+++..++..
T Consensus        50 ~~H~~I~G~tGsGKT~~l~~li~~   73 (433)
T d1e9ra_          50 PRHLLVNGATGTGKSVLLRELAYT   73 (433)
T ss_dssp             GGCEEEEECTTSSHHHHHHHHHHH
T ss_pred             cceEEEEeCCCCcHHHHHHHHHHH
Confidence            357999999999999998877653

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=95.02  E-value=0.0072  Score=39.45  Aligned_cols=23  Identities=30%  Similarity=0.491  Sum_probs=18.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      .--++|.|+||+|||+|+..+..
T Consensus        26 G~~~~I~G~~G~GKT~la~~~~~   48 (242)
T d1tf7a1          26 GRSTLVSGTSGTGKTLFSIQFLY   48 (242)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHHH
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHH
Confidence            34578889999999999876543

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=94.94  E-value=0.0084  Score=40.43  Aligned_cols=20  Identities=20%  Similarity=0.383  Sum_probs=17.3

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q 030364           13 LVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        13 i~v~G~~~~GKStl~~~l~~   32 (178)
                      ++|.|.||+|||+|+..+..
T Consensus        38 ~vi~G~~G~GKT~~~~~la~   57 (277)
T d1cr2a_          38 IMVTSGSGMGKSTFVRQQAL   57 (277)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            67889999999999887764

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=94.89  E-value=0.0054  Score=41.84  Aligned_cols=15  Identities=33%  Similarity=0.691  Sum_probs=13.2

Q ss_pred             EEEEcCCCCCHHHHH
Q 030364           13 LVLLGDMGTGKTSLV   27 (178)
Q Consensus        13 i~v~G~~~~GKStl~   27 (178)
                      ++|.|.||+||||.+
T Consensus        17 ~lI~g~aGTGKTt~l   31 (306)
T d1uaaa1          17 CLVLAGAGSGKTRVI   31 (306)
T ss_dssp             EEECCCTTSCHHHHH
T ss_pred             EEEEeeCCccHHHHH
Confidence            789999999999764

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=94.87  E-value=0.006  Score=41.97  Aligned_cols=16  Identities=31%  Similarity=0.719  Sum_probs=13.9

Q ss_pred             EEEEEcCCCCCHHHHH
Q 030364           12 KLVLLGDMGTGKTSLV   27 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~   27 (178)
                      .++|.|.+|+||||.+
T Consensus        26 ~~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          26 PLLIMAGAGSGKTRVL   41 (318)
T ss_dssp             CEEEEECTTSCHHHHH
T ss_pred             CEEEEecCCccHHHHH
Confidence            4889999999999765

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=94.73  E-value=0.014  Score=40.39  Aligned_cols=23  Identities=30%  Similarity=0.473  Sum_probs=19.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      .-.++++|++|+|||.+.+.|..
T Consensus        53 ~~~~lf~Gp~G~GKt~lak~la~   75 (315)
T d1qvra3          53 IGSFLFLGPTGVGKTELAKTLAA   75 (315)
T ss_dssp             SEEEEEBSCSSSSHHHHHHHHHH
T ss_pred             ceEEEEECCCcchHHHHHHHHHH
Confidence            33678889999999999988765

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=94.61  E-value=0.018  Score=38.82  Aligned_cols=25  Identities=24%  Similarity=0.333  Sum_probs=21.3

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHHh
Q 030364            8 NIQVKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus         8 ~~~~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      +++--+.+.|++++|||+|++.+..
T Consensus       102 ~k~n~~~l~G~~~tGKS~f~~~i~~  126 (267)
T d1u0ja_         102 GKRNTIWLFGPATTGKTNIAEAIAH  126 (267)
T ss_dssp             TTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CccEEEEEEcCCCCCHHHHHHHHHH
Confidence            4466788889999999999998875

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=94.44  E-value=0.012  Score=39.50  Aligned_cols=21  Identities=29%  Similarity=0.389  Sum_probs=17.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 030364           12 KLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~   32 (178)
                      -.+|.|++|+|||+|+-.+..
T Consensus        31 ~~~i~G~~G~GKS~l~l~la~   51 (274)
T d1nlfa_          31 VGALVSPGGAGKSMLALQLAA   51 (274)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHH
Confidence            356899999999999977653

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=93.94  E-value=0.02  Score=38.94  Aligned_cols=23  Identities=17%  Similarity=0.264  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCc
Q 030364           12 KLVLLGDMGTGKTSLVLRFVKGQ   34 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~~~   34 (178)
                      |++|+|++|+|||+|+..+..+.
T Consensus        45 r~~I~g~~g~GKT~l~~~i~~~~   67 (289)
T d1xpua3          45 RGLIVAPPKAGKTMLLQNIAQSI   67 (289)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHHH
T ss_pred             eeeEeCCCCCCHHHHHHHHHHHH
Confidence            89999999999999998887643

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=93.67  E-value=0.023  Score=40.04  Aligned_cols=19  Identities=42%  Similarity=0.574  Sum_probs=15.6

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q 030364           12 KLVLLGDMGTGKTSLVLRF   30 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l   30 (178)
                      -.+|.|+||+|||+++.++
T Consensus       165 ~~vI~G~pGTGKTt~i~~~  183 (359)
T d1w36d1         165 ISVISGGPGTGKTTTVAKL  183 (359)
T ss_dssp             EEEEECCTTSTHHHHHHHH
T ss_pred             eEEEEcCCCCCceehHHHH
Confidence            4677899999999988553

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=92.70  E-value=0.04  Score=36.31  Aligned_cols=20  Identities=20%  Similarity=0.288  Sum_probs=17.5

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q 030364           13 LVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        13 i~v~G~~~~GKStl~~~l~~   32 (178)
                      ++|.|+..+||||+++.+.-
T Consensus        44 ~iiTGpN~~GKSt~lk~i~l   63 (234)
T d1wb9a2          44 LIITGPNMGGKSTYMRQTAL   63 (234)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEeccCchhhHHHHHHHHH
Confidence            67789999999999998754

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=92.62  E-value=0.04  Score=36.59  Aligned_cols=23  Identities=22%  Similarity=0.423  Sum_probs=19.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      ..-|+|.|++|+||+.+.+.+-.
T Consensus        23 ~~pvlI~Ge~GtGK~~~A~~ih~   45 (247)
T d1ny5a2          23 ECPVLITGESGVGKEVVARLIHK   45 (247)
T ss_dssp             CSCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCEEEECCCCcCHHHHHHHHHH
Confidence            44589999999999999988754

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=92.54  E-value=0.043  Score=35.90  Aligned_cols=20  Identities=15%  Similarity=0.295  Sum_probs=17.6

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q 030364           13 LVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        13 i~v~G~~~~GKStl~~~l~~   32 (178)
                      ++|.|+..+||||+++.+.-
T Consensus        38 ~iiTGpN~~GKSt~lk~i~l   57 (224)
T d1ewqa2          38 VLITGPNMAGKSTFLRQTAL   57 (224)
T ss_dssp             EEEESCSSSSHHHHHHHHHH
T ss_pred             EEEECCCccccchhhhhhHH
Confidence            67889999999999998754

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=92.41  E-value=0.047  Score=36.63  Aligned_cols=22  Identities=27%  Similarity=0.501  Sum_probs=18.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 030364           12 KLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      =+.+.|++++|||+|+-.+...
T Consensus        56 itei~G~~gsGKTtl~l~~~~~   77 (263)
T d1u94a1          56 IVEIYGPESSGKTTLTLQVIAA   77 (263)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEecCCCcHHHHHHHHHHHH
Confidence            4678899999999999777653

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.10  E-value=0.046  Score=36.88  Aligned_cols=22  Identities=36%  Similarity=0.745  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 030364           12 KLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      |++++|.+|+|||+|+..+..+
T Consensus        70 r~~If~~~g~GKt~l~~~i~~~   91 (276)
T d2jdid3          70 KIGLFGGAGVGKTVLIMELINN   91 (276)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEeeCCCCCCHHHHHHHHHHH
Confidence            7999999999999999888754

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=91.93  E-value=0.049  Score=34.32  Aligned_cols=21  Identities=14%  Similarity=0.344  Sum_probs=18.6

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q 030364           13 LVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus        13 i~v~G~~~~GKStl~~~l~~~   33 (178)
                      ++|+|...||||.+...+...
T Consensus         2 iLVtGGarSGKS~~AE~l~~~   22 (180)
T d1c9ka_           2 ILVTGGARSGKSRHAEALIGD   22 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCccHHHHHHHHHhc
Confidence            689999999999999998743

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=91.67  E-value=0.22  Score=30.27  Aligned_cols=51  Identities=12%  Similarity=0.109  Sum_probs=29.7

Q ss_pred             hhhhcCCcEEEEEEECCCHhH----------HHHHHHHHHHHHHhCCCCceEEEEEeCCCC
Q 030364           77 PMYYRGAAAAVVVYDITSMDS----------FERAKKWVQELQRQGNPNLIMFLVANKVDL  127 (178)
Q Consensus        77 ~~~~~~~d~~i~v~d~~~~~s----------~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~  127 (178)
                      ...++++|++|+.........          ..-++.+...+.++..++.-++++.|-+|.
T Consensus        75 ~~~~~~advViitaG~~~~pg~~r~dl~~~N~~i~~~~~~~i~k~a~~~~~vivvsNPvDv  135 (154)
T d1y7ta1          75 KVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPANT  135 (154)
T ss_dssp             HHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHH
T ss_pred             hhhcccccEEEeecCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEecCcHHH
Confidence            345788999999876553211          122334445555554456666666666663

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=91.41  E-value=0.46  Score=30.41  Aligned_cols=66  Identities=15%  Similarity=0.144  Sum_probs=44.5

Q ss_pred             EEEEEEEeCCCchhhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEE-EEEeCCCCcc
Q 030364           58 TIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMF-LVANKVDLEE  129 (178)
Q Consensus        58 ~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~i-vv~nK~D~~~  129 (178)
                      .+.+.++|+++...  ......+..+|.++++...+ ..+.....+....+.+.   +.|++ +|.|+.+..+
T Consensus       111 ~~d~IiiD~~~~~~--~~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~~~~~---~~~~~giv~N~~~~~~  177 (237)
T d1g3qa_         111 KFDFILIDCPAGLQ--LDAMSAMLSGEEALLVTNPE-ISCLTDTMKVGIVLKKA---GLAILGFVLNRYGRSD  177 (237)
T ss_dssp             GCSEEEEECCSSSS--HHHHHHHTTCSEEEEEECSC-HHHHHHHHHHHHHHHHT---TCEEEEEEEEEETSCT
T ss_pred             cCCEEEEccccccc--ccchhhhhhhhccccccccc-ceecchhhHHHHHHhhh---hhhhhhhhhccccccc
Confidence            35677999987532  23344567899999998875 45666666666656543   55654 7899998643

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=91.28  E-value=0.54  Score=29.16  Aligned_cols=101  Identities=11%  Similarity=0.138  Sum_probs=57.2

Q ss_pred             CceeEEEEEcC-CCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhh--------h-----
Q 030364            8 NIQVKLVLLGD-MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERY--------H-----   73 (178)
Q Consensus         8 ~~~~~i~v~G~-~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~--------~-----   73 (178)
                      .+.+||.|+|. .+.|=+ ++..|..+.....                 ...+.+.++|.+.....        .     
T Consensus        22 k~~~kV~I~GA~G~Ig~~-l~~~La~g~v~g~-----------------~~~i~L~L~di~~~~~~l~g~~mdl~d~a~~   83 (175)
T d7mdha1          22 KKLVNIAVSGAAGMISNH-LLFKLASGEVFGQ-----------------DQPIALKLLGSERSFQALEGVAMELEDSLYP   83 (175)
T ss_dssp             CCCEEEEEETTTSHHHHH-HHHHHHHTTTTCT-----------------TCCEEEEEECCGGGHHHHHHHHHHHHTTTCT
T ss_pred             CCCcEEEEECCCcHHHHH-HHHHHHcCcccCC-----------------CceEEEEEecCccccchhcchhhhhcccccc
Confidence            45789999996 667755 4455665543221                 11355667777653211        0     


Q ss_pred             --------ccchhhhcCCcEEEEEEECCCHh--H----HHH----HHHHHHHHHHhCCCCceEEEEEeCCC
Q 030364           74 --------SLAPMYYRGAAAAVVVYDITSMD--S----FER----AKKWVQELQRQGNPNLIMFLVANKVD  126 (178)
Q Consensus        74 --------~~~~~~~~~~d~~i~v~d~~~~~--s----~~~----~~~~~~~~~~~~~~~~~~ivv~nK~D  126 (178)
                              ......+.++|++|++-......  +    +..    ++.+.+.+.++..++..++++.|=.|
T Consensus        84 ~~~~~~~~~~~~~~~~~aDvVvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~NPvd  154 (175)
T d7mdha1          84 LLREVSIGIDPYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCN  154 (175)
T ss_dssp             TEEEEEEESCHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHH
T ss_pred             cccCccccccchhhccCCceEEEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEecCcHH
Confidence                    01134478889999987655321  1    111    23444555666556777777777666

>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.13  E-value=0.36  Score=28.51  Aligned_cols=43  Identities=9%  Similarity=0.090  Sum_probs=25.8

Q ss_pred             hhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCc
Q 030364           79 YYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLE  128 (178)
Q Consensus        79 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~  128 (178)
                      .+..+|++++    .+.+=|+.+..+...+...   ++++++.+-..|-.
T Consensus        70 ~~~~~d~I~I----DEaQFf~dl~~~~~~~~~~---~~~Viv~GLd~Df~  112 (133)
T d1xbta1          70 EALGVAVIGI----DEGQFFPDIVEFCEAMANA---GKTVIVAALDGTFQ  112 (133)
T ss_dssp             HHHTCSEEEE----SSGGGCTTHHHHHHHHHHT---TCEEEEECCSBCTT
T ss_pred             hhcccceEEe----ehhHHHHHHHHHHHHHHhc---CCcEEEEEeccccc
Confidence            3456675332    3444455565666555543   77888888888853

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=90.02  E-value=0.11  Score=30.70  Aligned_cols=23  Identities=22%  Similarity=0.115  Sum_probs=17.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      .-..+|.++.|+|||+++-.+..
T Consensus         8 ~~~~ll~apTGsGKT~~~~~~~~   30 (136)
T d1a1va1           8 FQVAHLHAPTGSGKSTKVPAAYA   30 (136)
T ss_dssp             CEEEEEECCTTSCTTTHHHHHHH
T ss_pred             CCEEEEEeCCCCCHHHHHHHHHH
Confidence            44557789999999998865543

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=89.77  E-value=0.13  Score=32.71  Aligned_cols=24  Identities=8%  Similarity=0.131  Sum_probs=21.2

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 030364            9 IQVKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus         9 ~~~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      ....+++.|++|+|||++...+..
T Consensus        14 ~~~~~l~~G~~g~gk~~~a~~l~~   37 (198)
T d2gnoa2          14 EGISILINGEDLSYPREVSLELPE   37 (198)
T ss_dssp             SSEEEEEECSSSSHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHH
Confidence            467899999999999999988775

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=89.38  E-value=0.13  Score=30.85  Aligned_cols=17  Identities=41%  Similarity=0.632  Sum_probs=13.5

Q ss_pred             EEEcCCCCCHHH-HHHHH
Q 030364           14 VLLGDMGTGKTS-LVLRF   30 (178)
Q Consensus        14 ~v~G~~~~GKSt-l~~~l   30 (178)
                      +++|+-.||||| |++++
T Consensus         6 ~i~GpMfsGKTteLi~~~   23 (139)
T d2b8ta1           6 FITGPMFAGKTAELIRRL   23 (139)
T ss_dssp             EEECSTTSCHHHHHHHHH
T ss_pred             EEEccccCHHHHHHHHHH
Confidence            568999999999 55554

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=89.38  E-value=0.083  Score=36.16  Aligned_cols=14  Identities=57%  Similarity=0.821  Sum_probs=12.8

Q ss_pred             EEEcCCCCCHHHHH
Q 030364           14 VLLGDMGTGKTSLV   27 (178)
Q Consensus        14 ~v~G~~~~GKStl~   27 (178)
                      ++.|.+|+|||||-
T Consensus        18 lfFGLSGTGKTTLs   31 (313)
T d2olra1          18 VFFGLSGTGKTTLS   31 (313)
T ss_dssp             EEECSTTSSHHHHH
T ss_pred             EEEccCCCCcccce
Confidence            68999999999976

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=89.22  E-value=0.14  Score=32.50  Aligned_cols=64  Identities=16%  Similarity=-0.032  Sum_probs=33.4

Q ss_pred             cEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEE
Q 030364           84 AAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLET  152 (178)
Q Consensus        84 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (178)
                      +.+++|.+......... ......+...  .....-+|.|+.|....  ...+....+.+..+++++-+
T Consensus       139 ~~v~~V~~~~~~~~~~~-~~~~~~~~~~--~~~~~gvv~N~~~~~~~--~~~~~~~~l~~~~gi~vlG~  202 (224)
T d1byia_         139 LPVILVVGVKLGCINHA-MLTAQVIQHA--GLTLAGWVANDVTPPGK--RHAEYMTTLTRMIPAPLLGE  202 (224)
T ss_dssp             CCEEEEEECSTTHHHHH-HHHHHHHHHT--TCCEEEEEEECCSSCCT--THHHHHHHHHHHSSSCEEEE
T ss_pred             ceeeEEEeeccchhHHH-HHHHHHHhcc--CCccEEEEEeCcCCCch--HHHHHHHHHHHHhCCCEEEE
Confidence            34555555554333322 2233333333  23345788999885432  22334556666778887654

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=88.96  E-value=0.65  Score=27.82  Aligned_cols=23  Identities=26%  Similarity=0.495  Sum_probs=16.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhC
Q 030364           10 QVKLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      +.||.|+|...+|-+ +...+...
T Consensus         5 ~~KI~IIGaG~VG~~-~A~~l~~~   27 (146)
T d1ez4a1           5 HQKVVLVGDGAVGSS-YAFAMAQQ   27 (146)
T ss_dssp             BCEEEEECCSHHHHH-HHHHHHHH
T ss_pred             CCEEEEECCCHHHHH-HHHHHHhc
Confidence            679999999888966 44455443

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=88.82  E-value=0.091  Score=35.60  Aligned_cols=22  Identities=32%  Similarity=0.569  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 030364           12 KLVLLGDMGTGKTSLVLRFVKG   33 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~~   33 (178)
                      |++++|.+|+|||+|+..+..+
T Consensus        70 r~~If~~~g~GKt~ll~~~~~~   91 (285)
T d2jdia3          70 RELIIGDRQTGKTSIAIDTIIN   91 (285)
T ss_dssp             BCEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEeecCCCCChHHHHHHHHHh
Confidence            7899999999999998776654

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=88.67  E-value=0.091  Score=36.08  Aligned_cols=15  Identities=53%  Similarity=0.740  Sum_probs=13.3

Q ss_pred             EEEEcCCCCCHHHHH
Q 030364           13 LVLLGDMGTGKTSLV   27 (178)
Q Consensus        13 i~v~G~~~~GKStl~   27 (178)
                      -++.|.+|+|||||.
T Consensus        17 alffGLSGTGKTTLs   31 (318)
T d1j3ba1          17 AVFFGLSGTGKTTLS   31 (318)
T ss_dssp             EEEEECTTSCHHHHT
T ss_pred             EEEEccCCCCccccc
Confidence            488899999999975

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=88.40  E-value=0.11  Score=35.73  Aligned_cols=15  Identities=53%  Similarity=0.738  Sum_probs=13.5

Q ss_pred             EEEEcCCCCCHHHHH
Q 030364           13 LVLLGDMGTGKTSLV   27 (178)
Q Consensus        13 i~v~G~~~~GKStl~   27 (178)
                      -++.|.+|+|||||.
T Consensus        17 alfFGLSGTGKTTLs   31 (323)
T d1ii2a1          17 TVFFGLSGTGKTTLS   31 (323)
T ss_dssp             EEEECCTTSSHHHHH
T ss_pred             EEEEccCCCCcccce
Confidence            468999999999997

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=87.93  E-value=0.19  Score=33.66  Aligned_cols=22  Identities=27%  Similarity=0.407  Sum_probs=17.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~   32 (178)
                      -=+.+.|++++|||+|+-.+..
T Consensus        61 ~i~e~~G~~~~GKT~l~l~~~~   82 (269)
T d1mo6a1          61 RVIEIYGPESSGKTTVALHAVA   82 (269)
T ss_dssp             SEEEEECSSSSSHHHHHHHHHH
T ss_pred             eeEEEecCCCcHHHHHHHHHHH
Confidence            3467889999999999866654

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=87.87  E-value=0.18  Score=33.77  Aligned_cols=38  Identities=26%  Similarity=0.285  Sum_probs=24.6

Q ss_pred             EEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceE-EEEEeCCC
Q 030364           85 AAVVVYDITSMDSFERAKKWVQELQRQGNPNLIM-FLVANKVD  126 (178)
Q Consensus        85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-ivv~nK~D  126 (178)
                      .+++|-.. +.-+.....+.+..+....   .|+ -+|+|+.-
T Consensus       200 ~~~lVt~p-e~~~~~~~~r~~~~l~~~g---i~~~~vVvN~v~  238 (296)
T d1ihua1         200 RLVLVARL-QKSTLQEVARTHLELAAIG---LKNQYLVINGVL  238 (296)
T ss_dssp             EEEEEEES-CHHHHHHHHHHHHHHHHHT---CCCEEEEEEEEC
T ss_pred             eeeEecCc-chhHHHHHHHHHHHHHhcC---CCceEEEEcCCc
Confidence            45555544 4567777778888877763   333 56779864

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=87.58  E-value=0.19  Score=33.41  Aligned_cols=40  Identities=15%  Similarity=0.057  Sum_probs=22.2

Q ss_pred             cEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCC
Q 030364           84 AAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVD  126 (178)
Q Consensus        84 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D  126 (178)
                      +.+++|... +..+...+.+.+..+.....+-  .-+|.|+.-
T Consensus       184 ~~~vlV~~p-~~~~~~~~~r~~~~l~~~~~~~--~~iV~N~~~  223 (279)
T d1ihua2         184 TKVLLVTLP-ETTPVLEAANLQADLERAGIHP--WGWIINNSL  223 (279)
T ss_dssp             EEEEEEECS-SHHHHHHHHHHHHHHHHTTCCC--CEEEEEEES
T ss_pred             ccceEeccc-cHhHHHHHHHHHHHHHhcCCCc--cEEEEcCCc
Confidence            445555443 4566666777777666653332  234567753

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=87.22  E-value=0.21  Score=33.48  Aligned_cols=21  Identities=33%  Similarity=0.414  Sum_probs=17.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 030364           12 KLVLLGDMGTGKTSLVLRFVK   32 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~   32 (178)
                      =+.+.|++++|||+|+-.+..
T Consensus        59 itei~G~~~sGKT~l~l~~~~   79 (268)
T d1xp8a1          59 ITEIYGPESGGKTTLALAIVA   79 (268)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEecCCccchHHHHHHHHH
Confidence            356789999999999977765

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=86.82  E-value=0.19  Score=33.83  Aligned_cols=23  Identities=30%  Similarity=0.494  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCc
Q 030364           12 KLVLLGDMGTGKTSLVLRFVKGQ   34 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~~~~   34 (178)
                      |+.++|.+|+|||+|+..+..+.
T Consensus        69 r~~Ifg~~g~GKt~l~~~~~~~~   91 (276)
T d1fx0a3          69 RELIIGDRQTGKTAVATDTILNQ   91 (276)
T ss_dssp             BCBEEESSSSSHHHHHHHHHHTC
T ss_pred             eEeeccCCCCChHHHHHHHHhhh
Confidence            78999999999999997665443

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=86.24  E-value=2.1  Score=25.36  Aligned_cols=91  Identities=19%  Similarity=0.364  Sum_probs=50.5

Q ss_pred             EEEEEcC-CCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCch----hh--------------
Q 030364           12 KLVLLGD-MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE----RY--------------   72 (178)
Q Consensus        12 ~i~v~G~-~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~----~~--------------   72 (178)
                      ||.|+|. ..+| +++...+.......                      .+.++|.....    +.              
T Consensus         2 Kv~IiGA~G~VG-~~~A~~l~~~~~~~----------------------elvLiDi~~~~~~a~Dl~~~~~~~~~~~~~~   58 (144)
T d1mlda1           2 KVAVLGASGGIG-QPLSLLLKNSPLVS----------------------RLTLYDIAHTPGVAADLSHIETRATVKGYLG   58 (144)
T ss_dssp             EEEEETTTSTTH-HHHHHHHHTCTTCS----------------------EEEEEESSSHHHHHHHHTTSSSSCEEEEEES
T ss_pred             eEEEECCCChHH-HHHHHHHHhCCccc----------------------eEEEEeccccchhhHHHhhhhhhcCCCeEEc
Confidence            8999995 8999 66677777655432                      13345544210    00              


Q ss_pred             hccchhhhcCCcEEEEEEECCC-----H-hHH----HHHHHHHHHHHHhCCCCceEEEEEeCCC
Q 030364           73 HSLAPMYYRGAAAAVVVYDITS-----M-DSF----ERAKKWVQELQRQGNPNLIMFLVANKVD  126 (178)
Q Consensus        73 ~~~~~~~~~~~d~~i~v~d~~~-----~-~s~----~~~~~~~~~~~~~~~~~~~~ivv~nK~D  126 (178)
                      .......++++|++|+..-...     + +.+    .-++.+...+.++ .++.-++++.|=.|
T Consensus        59 ~~~~~~~~~~aDivVitag~~~~~g~sR~~ll~~N~~i~~~i~~~i~~~-~p~~iiivvtNPvD  121 (144)
T d1mlda1          59 PEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQH-CPDAMICIISNPVN  121 (144)
T ss_dssp             GGGHHHHHTTCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHH-CTTSEEEECSSCHH
T ss_pred             CCChHHHhCCCCEEEECCCcCCCCCCCcchHHHHHHHHHHHHHHHHHhc-CCCeEEEEecCchh
Confidence            0112345688999888765432     1 111    1234445555555 56666666666666

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=86.07  E-value=0.28  Score=30.72  Aligned_cols=16  Identities=25%  Similarity=0.385  Sum_probs=13.5

Q ss_pred             EEEEEcCCCCCHHHHH
Q 030364           12 KLVLLGDMGTGKTSLV   27 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~   27 (178)
                      ++++++++|+|||.+.
T Consensus        25 n~lv~~pTGsGKT~i~   40 (200)
T d1wp9a1          25 NCLIVLPTGLGKTLIA   40 (200)
T ss_dssp             CEEEECCTTSCHHHHH
T ss_pred             CeEEEeCCCCcHHHHH
Confidence            5789999999999643

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=84.66  E-value=0.13  Score=29.96  Aligned_cols=17  Identities=35%  Similarity=0.251  Sum_probs=13.8

Q ss_pred             eeEEEEEcCCCCCHHHH
Q 030364           10 QVKLVLLGDMGTGKTSL   26 (178)
Q Consensus        10 ~~~i~v~G~~~~GKStl   26 (178)
                      .-++++.+++|+|||..
T Consensus         7 ~~~~il~~~tGsGKT~~   23 (140)
T d1yksa1           7 GMTTVLDFHPGAGKTRR   23 (140)
T ss_dssp             TCEEEECCCTTSSTTTT
T ss_pred             CCcEEEEcCCCCChhHH
Confidence            45778889999999943

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=84.56  E-value=0.4  Score=28.98  Aligned_cols=100  Identities=13%  Similarity=0.167  Sum_probs=52.8

Q ss_pred             ceeEEEEEcC-CCCCHHHHHHHHHhCcCCCCccCceeeeEEEEEEEeCCeEEEEEEEeCCCchhh---------h-----
Q 030364            9 IQVKLVLLGD-MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERY---------H-----   73 (178)
Q Consensus         9 ~~~~i~v~G~-~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~---------~-----   73 (178)
                      ..+||.|+|. .++|.+... .|..+.....                 .....+.++|.......         .     
T Consensus         2 ~p~KV~IiGA~G~VG~~la~-~l~~~~~~~~-----------------~~~~~L~l~d~~~~~~~~~~l~~~~~~~~~~~   63 (154)
T d5mdha1           2 EPIRVLVTGAAGQIAYSLLY-SIGNGSVFGK-----------------DQPIILVLLDITPMMGVLDGVLMELQDCALPL   63 (154)
T ss_dssp             CCEEEEESSTTSHHHHTTHH-HHHTTTTTCT-----------------TCCEEEEEECCGGGHHHHHHHHHHHHHTCCTT
T ss_pred             CceEEEEECCCCHHHHHHHH-HHHHHHhcCC-----------------CCccEEEEecCccchhhhhhhhhhhccccccc
Confidence            3679999995 789987655 4554433210                 11245667776653110         0     


Q ss_pred             -------ccchhhhcCCcEEEEEEECCCH------hHH----HHHHHHHHHHHHhCCCCceEEEEEeCCC
Q 030364           74 -------SLAPMYYRGAAAAVVVYDITSM------DSF----ERAKKWVQELQRQGNPNLIMFLVANKVD  126 (178)
Q Consensus        74 -------~~~~~~~~~~d~~i~v~d~~~~------~s~----~~~~~~~~~~~~~~~~~~~~ivv~nK~D  126 (178)
                             ......++++|++|+.-.....      +.+    .-++.+...+.++...+.-++++.|-+|
T Consensus        64 ~~~~~~~~~~~~~~~~~dvVVitag~~~~~g~sr~dll~~N~~i~k~~~~~i~k~a~~~~~iivvsNPvD  133 (154)
T d5mdha1          64 LKDVIATDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGNPAN  133 (154)
T ss_dssp             EEEEEEESCHHHHTTTCSEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHH
T ss_pred             ccccccCcccccccCCceEEEEecccCCCCCCchhHHHHHhHHHHHHHHHHHHhhCCCceEEEEecCcHH
Confidence                   0112456778888876644321      112    2234444555555444444556667666

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=83.61  E-value=1.5  Score=25.86  Aligned_cols=23  Identities=26%  Similarity=0.501  Sum_probs=16.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCc
Q 030364           11 VKLVLLGDMGTGKTSLVLRFVKGQ   34 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~~~l~~~~   34 (178)
                      +||.|+|..++|.+ +...+....
T Consensus         1 mKI~IIGaG~VG~~-la~~l~~~~   23 (142)
T d1guza1           1 MKITVIGAGNVGAT-TAFRLAEKQ   23 (142)
T ss_dssp             CEEEEECCSHHHHH-HHHHHHHTT
T ss_pred             CEEEEECcCHHHHH-HHHHHHhCC
Confidence            68999998888877 445555443

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=82.95  E-value=0.49  Score=30.24  Aligned_cols=84  Identities=12%  Similarity=0.046  Sum_probs=47.3

Q ss_pred             EEEEEEeCCCchhhhccchhhhcCCcEEEEEEECCCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHH
Q 030364           59 IKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEG  138 (178)
Q Consensus        59 ~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~  138 (178)
                      +.+.++|+|+.-.  ......+..+|.++++.... ..+.....+....+.+...  .++-+|.|+.+....    ....
T Consensus       110 ~D~viiD~~~~~~--~~~~~~l~~ad~v~~v~~~~-~~~~~~~~~~~~~~~~~~~--~~~~iv~N~~~~~~~----~~~~  180 (232)
T d1hyqa_         110 TDILLLDAPAGLE--RSAVIAIAAAQELLLVVNPE-ISSITDGLKTKIVAERLGT--KVLGVVVNRITTLGI----EMAK  180 (232)
T ss_dssp             CSEEEEECCSSSS--HHHHHHHHHSSEEEEEECSS-HHHHHHHHHHHHHHHHHTC--EEEEEEEEEECTTTH----HHHH
T ss_pred             cceeeeccccccc--chhHHHhhhhheeeeecccc-ccchhhhhhhhhhhhhccc--ccccccccccccccc----cchh
Confidence            4466888887532  23334566799999988865 3455555544444444421  234577898864321    1223


Q ss_pred             HHHHHHcCCeEEE
Q 030364          139 ELYAQENGLSFLE  151 (178)
Q Consensus       139 ~~~~~~~~~~~~~  151 (178)
                      ..+.+..+.+++.
T Consensus       181 ~~i~~~~~~~~~~  193 (232)
T d1hyqa_         181 NEIEAILEAKVIG  193 (232)
T ss_dssp             HHHHHHTTSCEEE
T ss_pred             hhHHhhcCCeEEE
Confidence            4455556666543

>d1eg7a_ c.37.1.10 (A:) Formyltetrahydrofolate synthetase {Moorella thermoacetica [TaxId: 1525]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Formyltetrahydrofolate synthetase
species: Moorella thermoacetica [TaxId: 1525]

Probab=81.94  E-value=0.89  Score=33.25  Aligned_cols=71  Identities=13%  Similarity=0.089  Sum_probs=45.9

Q ss_pred             HHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHhhccc
Q 030364           98 FERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIGDCTEC  173 (178)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~~  173 (178)
                      +.++.+.++.+.   ..+.|+||.+|+.....+.++  +....++...++.+...-++-|.|-.++-+.+++.++.
T Consensus       354 ~~NL~rHIeNi~---~fGlpvVVAIN~F~tDTd~Ei--~~i~~~~~~~g~~~a~~wa~GG~Ga~dLA~~Vv~a~e~  424 (549)
T d1eg7a_         354 FANLEKHIENIG---KFGVPAVVAINAFPTDTEAEL--NLLYELCAKAGAEVALSWAKGGEGGLELARKVLQTLES  424 (549)
T ss_dssp             HHHHHHHHHHHH---TTTCCEEEEEECCTTCCHHHH--HHHHHHTTTSEEEEECCTTTGGGGGHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhh---hcCCCeEEEeccCCccchhHH--HHHHHHHhhcCcceeeecccCccchHHHHHHHHHHHhc
Confidence            444444444444   358999999999875443332  34556676677665443466678888888888887643

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=81.73  E-value=0.16  Score=32.20  Aligned_cols=17  Identities=35%  Similarity=0.360  Sum_probs=14.5

Q ss_pred             eEEEEEcCCCCCHHHHH
Q 030364           11 VKLVLLGDMGTGKTSLV   27 (178)
Q Consensus        11 ~~i~v~G~~~~GKStl~   27 (178)
                      -++++.+++|+|||...
T Consensus        41 ~~~il~apTGsGKT~~a   57 (202)
T d2p6ra3          41 KNLLLAMPTAAGKTLLA   57 (202)
T ss_dssp             SCEEEECSSHHHHHHHH
T ss_pred             CCEEEEcCCCCchhHHH
Confidence            36899999999999764

>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Transcription-repair coupling factor, TRCF
species: Escherichia coli [TaxId: 562]

Probab=81.16  E-value=0.39  Score=31.37  Aligned_cols=24  Identities=29%  Similarity=0.566  Sum_probs=18.8

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHH
Q 030364            8 NIQVKLVLLGDMGTGKTSLVLRFV   31 (178)
Q Consensus         8 ~~~~~i~v~G~~~~GKStl~~~l~   31 (178)
                      +..+..++.|..|+|||-+.-+..
T Consensus        74 ~~~~~~LL~GdvGsGKT~V~~~a~   97 (233)
T d2eyqa3          74 PLAMDRLVCGDVGFGKTEVAMRAA   97 (233)
T ss_dssp             SSCCEEEEECCCCTTTHHHHHHHH
T ss_pred             cCccCeEEEcCCCCCcHHHHHHHH
Confidence            346788999999999997765444

>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]

Probab=80.01  E-value=0.62  Score=35.45  Aligned_cols=20  Identities=25%  Similarity=0.524  Sum_probs=16.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHH
Q 030364           12 KLVLLGDMGTGKTSLVLRFV   31 (178)
Q Consensus        12 ~i~v~G~~~~GKStl~~~l~   31 (178)
                      -|++.|.+|||||.-.+.++
T Consensus        88 sIiisGeSGsGKTe~~k~il  107 (684)
T d1lkxa_          88 CVIISGESGAGKTEASKKIM  107 (684)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHH
Confidence            58999999999998766554