Citrus Sinensis ID: 030395

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------18
Protein Sequence
MSQSNDSSNPEEKEHDLESIFQQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKLLSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDDLIANSMNILEPAPVDADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGG
Secondary Structure (PSIPRED)
ccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccHHHHcccEEEEEEEccccccccHHHHHHHHHHccccccccccccEEEEEEEEcccccEEEEEEcccccccccccccccccccccccccccccccccccccEEEEEcccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcHHHHHccEEEEEEEccccccccHHHHHHHHHcccccccccccccEEEEEEEccccccEEEEEEccHHHccccccccccccccccccccHHHHHcccccccEEEEEcEEEcccccccccccc
Coil and Loop (DISEMBL)
msqsndssnpeekehDLESIFQQKRILRSQVRKTLksmdpslrshedNAIQKIVLeapwfkssqRLCAYISCsalrevdtSKLLSQILqipnadgdtktrkklyvprvedknshmrmFHISSIDDLIANsmnilepapvdadgneredvmqanepvdlfllpglafdrsgrrlgrggg
Flexible Loop (DISEMBL)
msqsndssnpeekehdlesifqqkrilRSQVRKTLKsmdpslrshednAIQKIVLeapwfkssqRLCAYISCSALREVDTSKLLSQIlqipnadgdtktrkklyvprvedknshmrMFHISSIDDLIANSMNILEPAPVDADGNEREDVMQANEpvdlfllpglafdrsgrrlgrggg
Low Complexity Region (SEG)
MSQSNDSSNPEEKEHDLESIFQQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKLLSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDDLIANSMNILEPAPVDADGNEREDVMQANEPVDLFLLPGLAFDrsgrrlgrggg
Disordered region (IsUnstruct)
************************************************AIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKLLSQILQIPNA********KLYVPRV*****HMRMFHISSIDDLIANSMNIL*********************VDLFLLPGLAF************
Disordered Region (DISOPRED)
*************************ILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKLLSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDDLIANSMNILEPAPVDADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGG*
Disordered Region (DISEMBL)
******************SIFQQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKLLSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDDLIANSMNILEPAPVDADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGG
Disordered Region (DISPRO)
*****************ESIFQQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKLLSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDDLIANSMNILEPAPVDADGNEREDVMQANEPVDLFLLPGLAFDRSG********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSQSNDSSNPEEKEHDLESIFQQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKLLSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDDLIANSMNILEPAPVDADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	178	2.2.26 [Sep-21-2011]
P80405	201	5-formyltetrahydrofolate	yes	no	0.780	0.691	0.291	2e-11
P49914	203	5-formyltetrahydrofolate	yes	no	0.780	0.684	0.291	3e-11
Q9D110	203	5-formyltetrahydrofolate	yes	no	0.780	0.684	0.284	1e-10
Q9XWE6	206	Probable 5-formyltetrahyd	yes	no	0.764	0.660	0.245	2e-09
Q9P7W2	204	Probable 5-formyltetrahyd	yes	no	0.747	0.651	0.286	2e-05
P40099	211	5-formyltetrahydrofolate	yes	no	0.786	0.663	0.263	4e-05
Q89AD6	195	Uncharacterized protein b	yes	no	0.741	0.676	0.261	6e-05
Q8K9E3	199	Uncharacterized protein B	yes	no	0.752	0.673	0.251	0.0002

>sp|P80405|MTHFS_RABIT 5-formyltetrahydrofolate cyclo-ligase OS=Oryctolagus cuniculus GN=MTHFS PE=1 SV=1

 Score = 68.2 bits (165), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 84/158 (53%), Gaps = 19/158 (12%)

Query: 24  KRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKL 83
           KR LR+++++ L+++    R      + + V+    ++ SQR+  ++S     E++T ++
Sbjct: 10  KRSLRAELKQRLRAISAEERLRCQRLLTQKVIAHRQYQKSQRISIFLSMPD--EIETEEI 67

Query: 84  LSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDDLIA---NSMNILEPAPVD 140
           +  I Q           K  ++PR   +++HM M  ++S D++ +    S NI +P+  D
Sbjct: 68  IKDIFQ---------QGKVCFIPRYRLQSNHMDMVKLASADEISSLPKTSWNIHQPSESD 118

Query: 141 ADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGG 178
                RE+ + A   +DL  +PGL FDR+G RLGRG G
Sbjct: 119 T----REEAL-ATGGLDLIFMPGLGFDRNGNRLGRGRG 151

Contributes to tetrahydrofolate metabolism. Helps regulate carbon flow through the folate-dependent one-carbon metabolic network that supplies carbon for the biosynthesis of purines, thymidine and amino acids.
Oryctolagus cuniculus (taxid: 9986)
EC: 6EC: .EC: 3EC: .EC: 3EC: .EC: 2

>sp|P49914|MTHFS_HUMAN 5-formyltetrahydrofolate cyclo-ligase OS=Homo sapiens GN=MTHFS PE=1 SV=2

 Score = 68.2 bits (165), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 80/158 (50%), Gaps = 19/158 (12%)

Query: 24  KRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKL 83
           KR LR ++++ L++M    R  +   + + V+    ++ S+R+  ++S     E++T ++
Sbjct: 10  KRSLRGELKQRLRAMSAEERLRQSRVLSQKVIAHSEYQKSKRISIFLSMQD--EIETEEI 67

Query: 84  LSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISS---IDDLIANSMNILEPAPVD 140
           +  I Q           K  ++PR   +++HM M  I S   I  L   S NI +P    
Sbjct: 68  IKDIFQ---------RGKICFIPRYRFQSNHMDMVRIESPEEISLLPKTSWNIPQPG--- 115

Query: 141 ADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGG 178
            +G+ RE+ +     +DL  +PGL FD+ G RLGRG G
Sbjct: 116 -EGDVREEALSTG-GLDLIFMPGLGFDKHGNRLGRGKG 151

Contributes to tetrahydrofolate metabolism. Helps regulate carbon flow through the folate-dependent one-carbon metabolic network that supplies carbon for the biosynthesis of purines, thymidine and amino acids.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 2

>sp|Q9D110|MTHFS_MOUSE 5-formyltetrahydrofolate cyclo-ligase OS=Mus musculus GN=Mthfs PE=2 SV=2

 Score = 66.2 bits (160), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 84/158 (53%), Gaps = 19/158 (12%)

Query: 24  KRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKL 83
           KR LR+++++ L+++    R  +   + + V+    +++S+R+  ++S     EV+T  +
Sbjct: 10  KRGLRAELKQRLRALSAEERLRQSLLLTQKVIAHNQYQNSKRISIFLSMQD--EVETEVI 67

Query: 84  LSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDD---LIANSMNILEPAPVD 140
           +  I          K  K  ++PR + +++HM M  ++S ++   L   S NI +P    
Sbjct: 68  IKDIF---------KQGKICFIPRYQFQSNHMDMVRLTSSEEIALLPKTSWNIHQPG--- 115

Query: 141 ADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGG 178
            +G+ RE+ +     +DL  LPGL FD+ G RLGRG G
Sbjct: 116 -EGDVREEALSTG-GLDLIFLPGLGFDKDGNRLGRGKG 151

Contributes to tetrahydrofolate metabolism. Helps regulate carbon flow through the folate-dependent one-carbon metabolic network that supplies carbon for the biosynthesis of purines, thymidine and amino acids.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 2

>sp|Q9XWE6|MTHFS_CAEEL Probable 5-formyltetrahydrofolate cyclo-ligase OS=Caenorhabditis elegans GN=Y106G6E.4 PE=3 SV=1

 Score = 62.0 bits (149), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 39/159 (24%), Positives = 78/159 (49%), Gaps = 23/159 (14%)

Query: 27  LRSQVRKTLKSMDPSLRSHEDN----AIQKIVLEAPWFKSSQRLCAYISCSALREVDTSK 82
           ++S++R+ +K++   +   E      A+ + ++E+ WF+ S+RL  Y+S S   E+ T  
Sbjct: 7   VKSELRQFMKTLLGKISKEETQRQTEAVFEKIIESKWFQESKRLSVYVSTSG--EIQTDS 64

Query: 83  LLSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHI---SSIDDLIANSMNILEPAPV 139
           ++ + L++          K++++P+    ++ M M  +   ++ D+L +    I +P P 
Sbjct: 65  IIQKALEM---------GKEVFIPQFTKGSTAMDMVRVPDQTAFDNLPSTLWGIRQPEP- 114

Query: 140 DADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGG 178
                 +        P+DL L PG+AF   G R G G G
Sbjct: 115 ----KWKWQSYHETGPLDLILAPGVAFSPYGLRCGHGKG 149

Caenorhabditis elegans (taxid: 6239)

EC: 6

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 2

>sp|Q9P7W2|FTHC_SCHPO Probable 5-formyltetrahydrofolate cyclo-ligase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC1703.08c PE=3 SV=1

 Score = 48.5 bits (114), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 72/157 (45%), Gaps = 24/157 (15%)

Query: 28  RSQVRKTLKSMDPSLRSH----EDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKL 83
           ++Q+R  L S    L  H    +  +I K V+E P +K  + +C Y++    +EV T  L
Sbjct: 5   KNQLRAILNSSLGKLADHIIDSQSISICKQVVELPEWKRCKNVCLYMNMPK-KEVRTRCL 63

Query: 84  LSQILQIPNADGDTKTRKKLYVPRVEDKNSH-MRMFHI-SSIDDLIANSMNILEPAPVDA 141
           +         D   K  K +++P+     SH M M+ +    + L  N   I EP     
Sbjct: 64  I---------DVAFKEGKNVFIPKC--IGSHVMEMYQVFEKTESLTINKWGIAEP----- 107

Query: 142 DGNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGG 178
           +G  R+ +M      +L ++PG+AFD    RLG G G
Sbjct: 108 NGESRK-IMDDETDCELIIVPGVAFDEKLSRLGHGKG 143

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 6

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 2

>sp|P40099|FTHC_YEAST 5-formyltetrahydrofolate cyclo-ligase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=FAU1 PE=1 SV=1

 Score = 47.8 bits (112), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 79/167 (47%), Gaps = 27/167 (16%)

Query: 24  KRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKL 83
           K++LR Q+++ + ++D  + + E + I + V       +S+R+  Y+S     EV T ++
Sbjct: 4   KQLLRRQIKRVINALDYDIIAAESHTISQAVRSLIASANSRRVACYMSMDK-GEVTTGEI 62

Query: 84  LSQILQIPNADGD-------TKTRKKLYVPRVEDKNSHM---RMFHISSIDDLIANS-MN 132
           +  + Q    DG        T T +  +    ED + H+   RM  +  + DL       
Sbjct: 63  IKNLFQ----DGQEVFLPRCTHTSESKHFKLREDHHPHLIFHRMSSLKMVRDLKPQGPYQ 118

Query: 133 ILEPAPVDADGNEREDVMQANEPVDLFLLPGLAFD-RSGRRLGRGGG 178
           + EP P      E  D++      D+ L+PG+AFD ++G R+G G G
Sbjct: 119 LKEPEP----HIEESDIL------DVVLVPGVAFDIKTGARMGHGAG 155

Utilizes 5-formyltetrahydrofolate (folinic acid) as substrate in an alternative way of folate biosynthesis.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 6

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 2

>sp|Q89AD6|Y370_BUCBP Uncharacterized protein bbp_370 OS=Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp) GN=bbp_370 PE=3 SV=1

 Score = 47.0 bits (110), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 70/153 (45%), Gaps = 21/153 (13%)

Query: 28  RSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKLLSQI 87
           R   RK  K ++  +R     +I K +       S + +   I CS   E+DT  L+ ++
Sbjct: 10  RKYFRKLRKKINNKIREQLAISISKKIFYCNILDSVKNIA--IFCSFDGEIDTYPLILKL 67

Query: 88  LQIPNADGDTKTRKKLYVPRVEDKNSHMRMF--HISSIDDLIANSMNILEPAPVDADGNE 145
                     +    +Y+P +      +  F  ++ +   LI N  NILEP        +
Sbjct: 68  ---------WRQNYNVYLPIINYNYKKILGFMKYLPN-TSLIKNRFNILEPV------FD 111

Query: 146 REDVMQANEPVDLFLLPGLAFDRSGRRLGRGGG 178
           R++ +Q+++ +D+  +P +AFD  G RLG GGG
Sbjct: 112 RKNFIQSDD-LDIMFVPLVAFDEFGYRLGMGGG 143

Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp) (taxid: 224915)

>sp|Q8K9E3|Y396_BUCAP Uncharacterized protein BUsg_396 OS=Buchnera aphidicola subsp. Schizaphis graminum (strain Sg) GN=BUsg_396 PE=3 SV=1

 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/163 (25%), Positives = 76/163 (46%), Gaps = 29/163 (17%)

Query: 22  QQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTS 81
           Q ++ +RS +R    S+  + +  E N I +         +++ +  ++S     E++T 
Sbjct: 7   QNRKEIRSYIRIVRNSVTLTKKYDESNKIVRTAFNCNIIYNAKNIACFLSFDG--EINTY 64

Query: 82  KLLSQILQIPNAD------GDTKTRKKLYVPRVEDKNSHMRMFHISSIDDLIANSMNILE 135
            L+ + L + N +        + +RK  +VP           F   SI  L  N  NIL+
Sbjct: 65  PLILK-LWLNNKNVFLPIVSSSYSRKLFFVP-----------FTCKSI--LYYNQYNILQ 110

Query: 136 PAPVDADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGG 178
           P       N ++ +++++  +DL ++P +AFD  G RLG GGG
Sbjct: 111 PF-----YNMKDIILESD--LDLIIVPLVAFDCRGVRLGMGGG 146

Buchnera aphidicola subsp. Schizaphis graminum (strain Sg) (taxid: 198804)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	178
255540841	292	5-formyltetrahydrofolate cyclo-ligase, p	0.943	0.575	0.75	5e-70
224121584	276	5-formyltetrahydrofolate cyclo-ligase [P	0.865	0.557	0.805	2e-67
449477615	337	PREDICTED: 5-formyltetrahydrofolate cycl	0.910	0.480	0.759	1e-66
449441041	337	PREDICTED: 5-formyltetrahydrofolate cycl	0.910	0.480	0.759	1e-66
79327754	214	5-formyltetrahydrofolate cycloligase [Ar	0.949	0.789	0.694	2e-65
297734059	242	unnamed protein product [Vitis vinifera]	0.859	0.632	0.771	5e-65
359491756	273	PREDICTED: 5-formyltetrahydrofolate cycl	0.859	0.560	0.771	5e-65
356508620	260	PREDICTED: 5-formyltetrahydrofolate cycl	0.876	0.6	0.766	1e-64
351720903	254	uncharacterized protein LOC100527426 [Gl	0.882	0.618	0.746	1e-63
217072924	241	unknown [Medicago truncatula]	0.837	0.618	0.753	2e-60

>gi|255540841|ref|XP_002511485.1| 5-formyltetrahydrofolate cyclo-ligase, putative [Ricinus communis] gi|223550600|gb|EEF52087.1| 5-formyltetrahydrofolate cyclo-ligase, putative [Ricinus communis]

 Score =  268 bits (686), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 126/168 (75%), Positives = 148/168 (88%)

Query: 11  EEKEHDLESIFQQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYI 70
           + +  + + IF+QKRILRS+VRK+LKSMDPSLRS EDNAIQ +VLEAPWFKSS+  CAYI
Sbjct: 41  QHQTANFDEIFKQKRILRSKVRKSLKSMDPSLRSEEDNAIQSLVLEAPWFKSSKTFCAYI 100

Query: 71  SCSALREVDTSKLLSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDDLIANS 130
           SCSALREV+TS LL +IL+ P  DG  +T KKLYVPRVEDKNSHMRM +ISS+DDLIANS
Sbjct: 101 SCSALREVNTSVLLREILKNPEKDGCAQTPKKLYVPRVEDKNSHMRMLNISSMDDLIANS 160

Query: 131 MNILEPAPVDADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGG 178
           MNILEPAP+D  GN+REDV+QAN+PVDLFLLPGLAF+R+G+RLGRGGG
Sbjct: 161 MNILEPAPIDGLGNKREDVLQANDPVDLFLLPGLAFERTGKRLGRGGG 208

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224121584|ref|XP_002318620.1| 5-formyltetrahydrofolate cyclo-ligase [Populus trichocarpa] gi|222859293|gb|EEE96840.1| 5-formyltetrahydrofolate cyclo-ligase [Populus trichocarpa]

 Score =  260 bits (664), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 124/154 (80%), Positives = 140/154 (90%)

Query: 16  DLESIFQQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSAL 75
           +L+ IF+QK++LRS+VRK+LKSMDPSLRS ED+AIQ +VLEAPWFKSSQRLCAYI+CSAL
Sbjct: 45  NLDGIFKQKQVLRSKVRKSLKSMDPSLRSQEDDAIQSLVLEAPWFKSSQRLCAYITCSAL 104

Query: 76  REVDTSKLLSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDDLIANSMNILE 135
           REVDTSKLLSQILQ P  DG  +  KKLYVPRVEDKNSHMRM +ISS+DDLIANSM+ILE
Sbjct: 105 REVDTSKLLSQILQNPTKDGSVENAKKLYVPRVEDKNSHMRMLNISSMDDLIANSMDILE 164

Query: 136 PAPVDADGNEREDVMQANEPVDLFLLPGLAFDRS 169
           PAPVD  GN REDVMQAN+PVDLFLLPGLAFD+S
Sbjct: 165 PAPVDQHGNAREDVMQANDPVDLFLLPGLAFDKS 198

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449477615|ref|XP_004155072.1| PREDICTED: 5-formyltetrahydrofolate cyclo-ligase-like [Cucumis sativus]

 Score =  257 bits (656), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 126/166 (75%), Positives = 141/166 (84%), Gaps = 4/166 (2%)

Query: 4   SNDSSNPEEKEHDLESIFQQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSS 63
           +N+S  PE  E  L+ IF QKR+LRS VRK LK+MDPS RS EDN IQ IVLEAPWFKSS
Sbjct: 98  TNESIKPEN-EDQLKHIFDQKRVLRSSVRKALKAMDPSFRSQEDNVIQSIVLEAPWFKSS 156

Query: 64  QRLCAYISCSALREVDTSKLLSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSI 123
           QRLCAY+SCSALREVDTS+LLS+ILQ P  DG +K   K+YVPRVEDKNSHMRMF+IS +
Sbjct: 157 QRLCAYVSCSALREVDTSRLLSEILQHPPKDGHSK---KIYVPRVEDKNSHMRMFNISRM 213

Query: 124 DDLIANSMNILEPAPVDADGNEREDVMQANEPVDLFLLPGLAFDRS 169
           DDLIANSMNILEPAPVD DGNEREDVMQ  +P+DLFLLPGLAFD+S
Sbjct: 214 DDLIANSMNILEPAPVDGDGNEREDVMQTKDPIDLFLLPGLAFDKS 259

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441041|ref|XP_004138292.1| PREDICTED: 5-formyltetrahydrofolate cyclo-ligase-like [Cucumis sativus]

 Score =  257 bits (656), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 126/166 (75%), Positives = 141/166 (84%), Gaps = 4/166 (2%)

Query: 4   SNDSSNPEEKEHDLESIFQQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSS 63
           +N+S  PE  E  L+ IF QKR+LRS VRK LK+MDPS RS EDN IQ IVLEAPWFKSS
Sbjct: 98  TNESIKPEN-EDQLKHIFDQKRVLRSSVRKALKAMDPSFRSQEDNVIQSIVLEAPWFKSS 156

Query: 64  QRLCAYISCSALREVDTSKLLSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSI 123
           QRLCAY+SCSALREVDTS+LLS+ILQ P  DG +K   K+YVPRVEDKNSHMRMF+IS +
Sbjct: 157 QRLCAYVSCSALREVDTSRLLSEILQHPPKDGHSK---KIYVPRVEDKNSHMRMFNISRM 213

Query: 124 DDLIANSMNILEPAPVDADGNEREDVMQANEPVDLFLLPGLAFDRS 169
           DDLIANSMNILEPAPVD DGNEREDVMQ  +P+DLFLLPGLAFD+S
Sbjct: 214 DDLIANSMNILEPAPVDGDGNEREDVMQTKDPIDLFLLPGLAFDKS 259

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79327754|ref|NP_001031873.1| 5-formyltetrahydrofolate cycloligase [Arabidopsis thaliana] gi|332004462|gb|AED91845.1| 5-formyltetrahydrofolate cycloligase [Arabidopsis thaliana]

 Score =  253 bits (646), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 123/177 (69%), Positives = 148/177 (83%), Gaps = 8/177 (4%)

Query: 1   MSQSNDSSNPEEKEHDLESIFQQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWF 60
           ++ S  S N EE    L+SIF+QKR++RS VRK+LK+MDPSLR+ +D AIQK VLEAPWF
Sbjct: 41  VAMSTTSKNQEE----LDSIFKQKRVVRSTVRKSLKAMDPSLRTQQDEAIQKTVLEAPWF 96

Query: 61  KSSQRLCAYISCSALREVDTSKLLSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHI 120
           KS + LCAYISC +L EVDTSK+LS+ILQ P    D+ T+KKLYVP VEDKNS+MRM HI
Sbjct: 97  KSCKGLCAYISCKSLNEVDTSKILSEILQHP----DSNTQKKLYVPWVEDKNSNMRMLHI 152

Query: 121 SSIDDLIANSMNILEPAPVDADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGG 177
           S ++DL+ANSMNILEPAPVDA GN+REDV+QA+EP+DLF+LPGLAFDR GRRLGRG 
Sbjct: 153 SHMEDLVANSMNILEPAPVDAQGNDREDVLQADEPIDLFILPGLAFDRCGRRLGRGA 209

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297734059|emb|CBI15306.3| unnamed protein product [Vitis vinifera]

 Score =  252 bits (643), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 118/153 (77%), Positives = 136/153 (88%)

Query: 17  LESIFQQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALR 76
           LE++F+QK+ILRS VRK LK MDPS RS EDNA+Q I+LEAPWF+SSQRLCAYISCS+LR
Sbjct: 13  LEAVFKQKKILRSSVRKALKGMDPSSRSQEDNAVQNIILEAPWFRSSQRLCAYISCSSLR 72

Query: 77  EVDTSKLLSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDDLIANSMNILEP 136
           EVDTSK+LS+ILQ P  DG T+  KKLYVPRVEDKNS+MRM +I+ +DDLI+NSMNILEP
Sbjct: 73  EVDTSKVLSEILQNPAKDGHTQMGKKLYVPRVEDKNSYMRMLNITHMDDLISNSMNILEP 132

Query: 137 APVDADGNEREDVMQANEPVDLFLLPGLAFDRS 169
           APVD DGNEREDVMQA +PVDL LLPGLAFD+S
Sbjct: 133 APVDGDGNEREDVMQATDPVDLLLLPGLAFDKS 165

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359491756|ref|XP_002266146.2| PREDICTED: 5-formyltetrahydrofolate cyclo-ligase [Vitis vinifera]

 Score =  252 bits (643), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 118/153 (77%), Positives = 136/153 (88%)

Query: 17  LESIFQQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALR 76
           LE++F+QK+ILRS VRK LK MDPS RS EDNA+Q I+LEAPWF+SSQRLCAYISCS+LR
Sbjct: 44  LEAVFKQKKILRSSVRKALKGMDPSSRSQEDNAVQNIILEAPWFRSSQRLCAYISCSSLR 103

Query: 77  EVDTSKLLSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDDLIANSMNILEP 136
           EVDTSK+LS+ILQ P  DG T+  KKLYVPRVEDKNS+MRM +I+ +DDLI+NSMNILEP
Sbjct: 104 EVDTSKVLSEILQNPAKDGHTQMGKKLYVPRVEDKNSYMRMLNITHMDDLISNSMNILEP 163

Query: 137 APVDADGNEREDVMQANEPVDLFLLPGLAFDRS 169
           APVD DGNEREDVMQA +PVDL LLPGLAFD+S
Sbjct: 164 APVDGDGNEREDVMQATDPVDLLLLPGLAFDKS 196

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356508620|ref|XP_003523053.1| PREDICTED: 5-formyltetrahydrofolate cyclo-ligase-like [Glycine max]

 Score =  251 bits (640), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 125/163 (76%), Positives = 140/163 (85%), Gaps = 7/163 (4%)

Query: 7   SSNPEEKEHD-LESIFQQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQR 65
           S+N    +HD L++IF+ KR+LR+QVRKTLKS+ PSLRSH+DN +Q IVL APWFKSS+R
Sbjct: 23  STNTNTPKHDGLDAIFKHKRLLRTQVRKTLKSIQPSLRSHQDNTVQDIVLGAPWFKSSRR 82

Query: 66  LCAYISCSALREVDTSKLLSQILQIPNA-DGDTKTRKKLYVPRVEDKNSHMRMFHISSID 124
           LCAYISC+ALREVDT K+LSQILQ  NA DG     KKLYVPRVEDKNSHMRM HIS ID
Sbjct: 83  LCAYISCAALREVDTLKILSQILQHNNATDG-----KKLYVPRVEDKNSHMRMLHISGID 137

Query: 125 DLIANSMNILEPAPVDADGNEREDVMQANEPVDLFLLPGLAFD 167
           DLIANSM+ILEPAPVD DGN REDVMQAN+PVDLFLLPGLAFD
Sbjct: 138 DLIANSMDILEPAPVDVDGNAREDVMQANDPVDLFLLPGLAFD 180

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351720903|ref|NP_001235912.1| uncharacterized protein LOC100527426 [Glycine max] gi|255632316|gb|ACU16516.1| unknown [Glycine max]

 Score =  247 bits (631), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 121/162 (74%), Positives = 138/162 (85%), Gaps = 5/162 (3%)

Query: 7   SSNPEEKEHD-LESIFQQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQR 65
           S+N    +HD +++IF+QKR LR+QVRKTLKS+DPSL+SH+DN +Q IVL APWF+SS+R
Sbjct: 17  STNTNTPKHDDIDAIFKQKRFLRTQVRKTLKSIDPSLKSHQDNTVQDIVLGAPWFRSSRR 76

Query: 66  LCAYISCSALREVDTSKLLSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDD 125
           LCAYISC+ALREVDTSK+LSQILQ       T   KKLYVPRVEDKNSHMRM HIS IDD
Sbjct: 77  LCAYISCAALREVDTSKILSQILQ----HNSTTDGKKLYVPRVEDKNSHMRMLHISRIDD 132

Query: 126 LIANSMNILEPAPVDADGNEREDVMQANEPVDLFLLPGLAFD 167
           LIANSM+ILEP PVDADGN REDVMQAN+PVDLF LPGLAFD
Sbjct: 133 LIANSMDILEPTPVDADGNAREDVMQANDPVDLFPLPGLAFD 174

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217072924|gb|ACJ84822.1| unknown [Medicago truncatula]

 Score =  237 bits (604), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 116/154 (75%), Positives = 135/154 (87%), Gaps = 5/154 (3%)

Query: 16  DLESIFQQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSAL 75
           +L++IF+QK+ LR+QVRKTLK++DPSLRS +D AIQ I++ APWFKSS+ LCAYISCSAL
Sbjct: 15  ELDAIFKQKKALRTQVRKTLKAIDPSLRSQQDKAIQDIIVGAPWFKSSRGLCAYISCSAL 74

Query: 76  REVDTSKLLSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDDLIANSMNILE 135
           REVDTSKLLS ILQ P A GD    KKLYVPRVEDKNSHMRM +IS IDDL+ANSMNILE
Sbjct: 75  REVDTSKLLSHILQPPPA-GD----KKLYVPRVEDKNSHMRMLNISRIDDLVANSMNILE 129

Query: 136 PAPVDADGNEREDVMQANEPVDLFLLPGLAFDRS 169
           P PVDADGN R+DV+QAN+PVD+ LLPGLAFD+S
Sbjct: 130 PTPVDADGNARQDVLQANDPVDIMLLPGLAFDKS 163

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	178
TAIR|locus:2179827	277	5-FCL "5-formyltetrahydrofolat	0.893	0.574	0.688	2e-56
UNIPROTKB|F1NWN8	201	MTHFS "Uncharacterized protein	0.724	0.641	0.272	7.4e-11
FB|FBgn0085453	201	CG34424 [Drosophila melanogast	0.719	0.636	0.291	2e-10
UNIPROTKB|P49914	203	MTHFS "5-formyltetrahydrofolat	0.741	0.650	0.254	9.7e-09
UNIPROTKB|E2RR20	203	MTHFS "Uncharacterized protein	0.747	0.655	0.25	2e-08
UNIPROTKB|P80405	201	MTHFS "5-formyltetrahydrofolat	0.719	0.636	0.265	2.6e-08
MGI|MGI:1340032	203	Mthfs "5, 10-methenyltetrahydr	0.719	0.630	0.251	7.4e-08
RGD|1306876	203	Mthfs "5,10-methenyltetrahydro	0.719	0.630	0.244	7.4e-08
WB|WBGene00013708	206	Y106G6E.4 [Caenorhabditis eleg	0.752	0.650	0.235	1.1e-05
UNIPROTKB|Q1RMT3	201	MTHFS "5,10-methenyltetrahydro	0.719	0.636	0.224	0.00023

TAIR|locus:2179827 5-FCL "5-formyltetrahydrofolate cycloligase" [Arabidopsis thaliana (taxid:3702)]

 Score = 581 (209.6 bits), Expect = 2.0e-56, P = 2.0e-56
 Identities = 115/167 (68%), Positives = 140/167 (83%)

Query:     1 MSQSNDSSNPEEKEHDLESIFQQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWF 60
             ++ S  S N EE    L+SIF+QKR++RS VRK+LK+MDPSLR+ +D AIQK VLEAPWF
Sbjct:    41 VAMSTTSKNQEE----LDSIFKQKRVVRSTVRKSLKAMDPSLRTQQDEAIQKTVLEAPWF 96

Query:    61 KSSQRLCAYISCSALREVDTSKLLSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHI 120
             KS + LCAYISC +L EVDTSK+LS+ILQ P    D+ T+KKLYVP VEDKNS+MRM HI
Sbjct:    97 KSCKGLCAYISCKSLNEVDTSKILSEILQHP----DSNTQKKLYVPWVEDKNSNMRMLHI 152

Query:   121 SSIDDLIANSMNILEPAPVDADGNEREDVMQANEPVDLFLLPGLAFD 167
             S ++DL+ANSMNILEPAPVDA GN+REDV+QA+EP+DLF+LPGLAFD
Sbjct:   153 SHMEDLVANSMNILEPAPVDAQGNDREDVLQADEPIDLFILPGLAFD 199

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0009396 "folic acid-containing compound biosynthetic process" evidence=IEA

GO:0030272 "5-formyltetrahydrofolate cyclo-ligase activity" evidence=IEA;IGI;IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0046653 "tetrahydrofolate metabolic process" evidence=IMP

UNIPROTKB|F1NWN8 MTHFS "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 151 (58.2 bits), Expect = 7.4e-11, P = 7.4e-11
 Identities = 40/147 (27%), Positives = 78/147 (53%)

Query:    24 KRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKL 83
             KR LR+++R+ L+++  + +  +   + + V+    ++ S+R+  ++S     E+ T ++
Sbjct:    10 KRALRTELRQKLRALGAAEKQRQSRLLSRKVIGHSKYQESKRIAIFLSMPD--EIQTEEI 67

Query:    84 LSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDD---LIANSMNILEPAPVD 140
             +  I          K  K+ ++PR +  ++HM M  +SS +D   L   S NIL+P+   
Sbjct:    68 IKDIF---------KQGKECFIPRYKPHSNHMDMLKLSSAEDISSLTLTSWNILQPSD-- 116

Query:   141 ADGNEREDVMQANEPVDLFLLPGLAFD 167
              D + RE+ + A   +DL  +PGL FD
Sbjct:   117 -DDSAREEAL-AGGGLDLIFMPGLGFD 141

GO:0005524 "ATP binding" evidence=IEA

GO:0009396 "folic acid-containing compound biosynthetic process" evidence=IEA

GO:0030272 "5-formyltetrahydrofolate cyclo-ligase activity" evidence=IEA

FB|FBgn0085453 CG34424 [Drosophila melanogaster (taxid:7227)]

 Score = 147 (56.8 bits), Expect = 2.0e-10, P = 2.0e-10
 Identities = 42/144 (29%), Positives = 74/144 (51%)

Query:    24 KRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKL 83
             K  LR +++  LK +D    + +  A+   VL++  F+ +QR+  Y+S ++  E+DT+ L
Sbjct:    10 KVALRKRMKDALKGIDAEAIARQSQAVTAKVLQSEIFRQAQRVSIYLSTAS--ELDTTAL 67

Query:    84 LSQILQIPNADGDTKTRKKLYVPRVEDKNSHM-RMFHISSIDDLIANSMNILEPAPVDAD 142
             LS++ ++          K ++VP  E     M R+  +   + L     NI +P   +A 
Sbjct:    68 LSEMFRL---------EKMVFVPTYEGSRMKMVRLRGMEEYESLPLTKWNIKQPDFKEA- 117

Query:   143 GNEREDVMQANEPVDLFLLPGLAF 166
                RED M     +DLF++PG+AF
Sbjct:   118 ---REDAMTNGHGIDLFIVPGVAF 138

GO:0005524 "ATP binding" evidence=IEA

GO:0009396 "folic acid-containing compound biosynthetic process" evidence=IEA

GO:0005829 "cytosol" evidence=ISS

GO:0030272 "5-formyltetrahydrofolate cyclo-ligase activity" evidence=ISS

UNIPROTKB|P49914 MTHFS "5-formyltetrahydrofolate cyclo-ligase" [Homo sapiens (taxid:9606)]

 Score = 131 (51.2 bits), Expect = 9.7e-09, P = 9.7e-09
 Identities = 39/153 (25%), Positives = 77/153 (50%)

Query:    19 SIFQQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREV 78
             ++   KR LR ++++ L++M    R  +   + + V+    ++ S+R+  ++S     E+
Sbjct:     5 AVSSAKRSLRGELKQRLRAMSAEERLRQSRVLSQKVIAHSEYQKSKRISIFLSMQD--EI 62

Query:    79 DTSKLLSQILQIPNADGDTKTRKKL-YVPRVEDKNSHMRMFHISSIDD---LIANSMNIL 134
             +T +++  I Q          R K+ ++PR   +++HM M  I S ++   L   S NI 
Sbjct:    63 ETEEIIKDIFQ----------RGKICFIPRYRFQSNHMDMVRIESPEEISLLPKTSWNIP 112

Query:   135 EPAPVDADGNEREDVMQANEPVDLFLLPGLAFD 167
             +P     +G+ RE+ +     +DL  +PGL FD
Sbjct:   113 QPG----EGDVREEALSTGG-LDLIFMPGLGFD 140

GO:0009396 "folic acid-containing compound biosynthetic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005542 "folic acid binding" evidence=IEA

GO:0015942 "formate metabolic process" evidence=NAS

GO:0030272 "5-formyltetrahydrofolate cyclo-ligase activity" evidence=IDA;NAS

GO:0005829 "cytosol" evidence=NAS

GO:0046653 "tetrahydrofolate metabolic process" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

UNIPROTKB|E2RR20 MTHFS "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 128 (50.1 bits), Expect = 2.0e-08, P = 2.0e-08
 Identities = 38/152 (25%), Positives = 76/152 (50%)

Query:    19 SIFQQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREV 78
             ++   KR LR+++++ L++M    R  +   + + V+    ++ S+R+  ++S     E+
Sbjct:     6 AVSSAKRSLRAELKQRLRAMSAEERLRQSRLLAQKVIAHSQYQKSKRISIFLSMHD--EI 63

Query:    79 DTSKLLSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISS---IDDLIANSMNILE 135
             +T +++  I Q     G T      ++PR + +++HM M  ++S   I  L   S NI +
Sbjct:    64 ETEEIIRDIFQ----QGKT-----CFIPRYQFRSNHMDMVKLASPEEISSLPKTSWNIHQ 114

Query:   136 PAPVDADGNEREDVMQANEPVDLFLLPGLAFD 167
             P     +   RE+ +     +DL  +PGL FD
Sbjct:   115 PG----EDEVREEALSTGG-LDLIFMPGLGFD 141

GO:0030272 "5-formyltetrahydrofolate cyclo-ligase activity" evidence=IEA

GO:0009396 "folic acid-containing compound biosynthetic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|P80405 MTHFS "5-formyltetrahydrofolate cyclo-ligase" [Oryctolagus cuniculus (taxid:9986)]

 Score = 127 (49.8 bits), Expect = 2.6e-08, P = 2.6e-08
 Identities = 39/147 (26%), Positives = 76/147 (51%)

Query:    24 KRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKL 83
             KR LR+++++ L+++    R      + + V+    ++ SQR+  ++S     E++T ++
Sbjct:    10 KRSLRAELKQRLRAISAEERLRCQRLLTQKVIAHRQYQKSQRISIFLSMPD--EIETEEI 67

Query:    84 LSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDDLIA---NSMNILEPAPVD 140
             +  I Q     G     K  ++PR   +++HM M  ++S D++ +    S NI +P+  D
Sbjct:    68 IKDIFQ----QG-----KVCFIPRYRLQSNHMDMVKLASADEISSLPKTSWNIHQPSESD 118

Query:   141 ADGNEREDVMQANEPVDLFLLPGLAFD 167
                  RE+ + A   +DL  +PGL FD
Sbjct:   119 T----REEAL-ATGGLDLIFMPGLGFD 140

GO:0030272 "5-formyltetrahydrofolate cyclo-ligase activity" evidence=ISS

GO:0046653 "tetrahydrofolate metabolic process" evidence=ISS

MGI|MGI:1340032 Mthfs "5, 10-methenyltetrahydrofolate synthetase" [Mus musculus (taxid:10090)]

 Score = 123 (48.4 bits), Expect = 7.4e-08, P = 7.4e-08
 Identities = 37/147 (25%), Positives = 76/147 (51%)

Query:    24 KRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKL 83
             KR LR+++++ L+++    R  +   + + V+    +++S+R+  ++S     EV+T  +
Sbjct:    10 KRGLRAELKQRLRALSAEERLRQSLLLTQKVIAHNQYQNSKRISIFLSMQD--EVETEVI 67

Query:    84 LSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDDLIA---NSMNILEPAPVD 140
             +  I          K  K  ++PR + +++HM M  ++S +++      S NI +P    
Sbjct:    68 IKDIF---------KQGKICFIPRYQFQSNHMDMVRLTSSEEIALLPKTSWNIHQPG--- 115

Query:   141 ADGNEREDVMQANEPVDLFLLPGLAFD 167
              +G+ RE+ +     +DL  LPGL FD
Sbjct:   116 -EGDVREEALSTGG-LDLIFLPGLGFD 140

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005542 "folic acid binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0009396 "folic acid-containing compound biosynthetic process" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0030272 "5-formyltetrahydrofolate cyclo-ligase activity" evidence=ISO

GO:0046653 "tetrahydrofolate metabolic process" evidence=ISO

RGD|1306876 Mthfs "5,10-methenyltetrahydrofolate synthetase (5-formyltetrahydrofolate cyclo-ligase)" [Rattus norvegicus (taxid:10116)]

 Score = 123 (48.4 bits), Expect = 7.4e-08, P = 7.4e-08
 Identities = 36/147 (24%), Positives = 77/147 (52%)

Query:    24 KRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKL 83
             KR LR+++++ L+++    R  + + + + V+    +++S+R+  ++S     E++T ++
Sbjct:    10 KRGLRAELKQRLRALGAEERLRQSHLLTQKVIAHSQYQNSKRISIFLSMQD--EIETEEI 67

Query:    84 LSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDD---LIANSMNILEPAPVD 140
             +  I          K  K  ++PR +  ++HM M  +++ ++   L   S NI +P    
Sbjct:    68 IKDIF---------KQGKICFIPRYQFHSNHMDMVRLTAPEEVALLPKTSWNIHQPG--- 115

Query:   141 ADGNEREDVMQANEPVDLFLLPGLAFD 167
              +G+ RE+ +     +DL  LPGL FD
Sbjct:   116 -EGDVREEALSTGG-LDLIFLPGLGFD 140

GO:0003674 "molecular_function" evidence=ND

GO:0005524 "ATP binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=ISO

GO:0005794 "Golgi apparatus" evidence=ISO

GO:0005886 "plasma membrane" evidence=ISO

GO:0008150 "biological_process" evidence=ND

GO:0009396 "folic acid-containing compound biosynthetic process" evidence=IEA

GO:0030272 "5-formyltetrahydrofolate cyclo-ligase activity" evidence=IEA;ISO

GO:0046653 "tetrahydrofolate metabolic process" evidence=ISO

WB|WBGene00013708 Y106G6E.4 [Caenorhabditis elegans (taxid:6239)]

 Score = 114 (45.2 bits), Expect = 1.1e-05, P = 1.1e-05
 Identities = 36/153 (23%), Positives = 73/153 (47%)

Query:    17 LESIFQQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALR 76
             + +I + K  LR  ++  L  +       +  A+ + ++E+ WF+ S+RL  Y+S S   
Sbjct:     1 MSAIKEVKSELRQFMKTLLGKISKEETQRQTEAVFEKIIESKWFQESKRLSVYVSTSG-- 58

Query:    77 EVDTSKLLSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHI---SSIDDLIANSMNI 133
             E+ T  ++ + L++    G     K++++P+    ++ M M  +   ++ D+L +    I
Sbjct:    59 EIQTDSIIQKALEM----G-----KEVFIPQFTKGSTAMDMVRVPDQTAFDNLPSTLWGI 109

Query:   134 LEPAPVDADGNEREDVMQANEPVDLFLLPGLAF 166
              +P P       +        P+DL L PG+AF
Sbjct:   110 RQPEP-----KWKWQSYHETGPLDLILAPGVAF 137

GO:0005524 "ATP binding" evidence=IEA

GO:0009396 "folic acid-containing compound biosynthetic process" evidence=IEA

GO:0030272 "5-formyltetrahydrofolate cyclo-ligase activity" evidence=IEA

UNIPROTKB|Q1RMT3 MTHFS "5,10-methenyltetrahydrofolate synthetase (5-formyltetrahydrofolate cyclo-ligase)" [Bos taurus (taxid:9913)]

 Score = 105 (42.0 bits), Expect = 0.00023, P = 0.00023
 Identities = 33/147 (22%), Positives = 74/147 (50%)

Query:    24 KRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKL 83
             KR LR+++++ L+++    R  + + + + V     ++ S+R+  ++S     E++T ++
Sbjct:    11 KRSLRAELKQRLRALSAEERLRQSHLLAQKVFTHNEYQKSKRVSIFLSMPD--EIETEEI 68

Query:    84 LSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDDLIA---NSMNILEPAPVD 140
             +  I +     G T      ++PR + +++HM M  ++S +++      S NI +P    
Sbjct:    69 IKDIFR----QGKT-----CFIPRYQLQSNHMDMVKLASPEEIALLPRTSWNIQQPG--- 116

Query:   141 ADGNEREDVMQANEPVDLFLLPGLAFD 167
              +    E+ +     +DL  +PGL FD
Sbjct:   117 -EDEVLEEALSTGG-LDLIFVPGLGFD 141

GO:0030272 "5-formyltetrahydrofolate cyclo-ligase activity" evidence=IEA

GO:0009396 "folic acid-containing compound biosynthetic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	178
PLN02812	211	PLN02812, PLN02812, 5-formyltetrahydrofolate cyclo	3e-88
TIGR02727	179	TIGR02727, MTHFS_bact, 5,10-methenyltetrahydrofola	6e-28
pfam01812	182	pfam01812, 5-FTHF_cyc-lig, 5-formyltetrahydrofolat	8e-23
COG0212	191	COG0212, COG0212, 5-formyltetrahydrofolate cyclo-l	2e-22
PRK10333	182	PRK10333, PRK10333, 5-formyltetrahydrofolate cyclo	2e-05

>gnl|CDD|178408 PLN02812, PLN02812, 5-formyltetrahydrofolate cyclo-ligase

 Score =  256 bits (657), Expect = 3e-88
 Identities = 110/162 (67%), Positives = 131/162 (80%), Gaps = 9/162 (5%)

Query: 18  ESIFQQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALRE 77
           + I +QK+ LR +VR+ LK++ P  R+ ED AIQ  +LE PWFKSS+RLCAY+SC+ LRE
Sbjct: 1   DEIREQKKALRKEVRRALKALSPEQRAQEDAAIQSRLLELPWFKSSKRLCAYVSCAKLRE 60

Query: 78  VDTSKLLSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSI-DDLIANSMNILEP 136
           VDTSK+LS+ILQ P         K+LYVPRVEDKNS+MRM HI+ + DDL+ANSMNILEP
Sbjct: 61  VDTSKILSEILQNP--------DKRLYVPRVEDKNSNMRMLHITDMADDLVANSMNILEP 112

Query: 137 APVDADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGG 178
            PVDADGN REDV+QA EP+DL LLPGLAFDRSGRRLGRGGG
Sbjct: 113 TPVDADGNPREDVLQAPEPLDLLLLPGLAFDRSGRRLGRGGG 154

Length = 211

>gnl|CDD|233985 TIGR02727, MTHFS_bact, 5,10-methenyltetrahydrofolate synthetase

 Score =  102 bits (256), Expect = 6e-28
 Identities = 49/157 (31%), Positives = 78/157 (49%), Gaps = 21/157 (13%)

Query: 24  KRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALR-EVDTSK 82
           K+ LR ++ +  K++  + R    +AI K +L    +K+++ +  Y+    LR EVDT  
Sbjct: 1   KKELRKKLLEARKALSSAERKAASSAIAKRLLALIEWKNAKTIALYLP---LRGEVDTRP 57

Query: 83  LLSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDD-LIANSMNILEPAPVDA 141
           L+ Q+L+           K++ +P+V+     M  F I S +  L      ILEP     
Sbjct: 58  LIEQLLKEG---------KRVALPKVDGDGKEMLFFRIWSPEQPLTKGPFGILEP---VG 105

Query: 142 DGNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGG 178
           D  E     +    +DL ++PG+AFDR G RLG GGG
Sbjct: 106 DLEEPVPPDE----IDLIIVPGVAFDRRGYRLGYGGG 138

This enzyme, 5,10-methenyltetrahydrofolate synthetase, is also called 5-formyltetrahydrofolate cycloligase. Function of bacterial proteins in this family was inferred originally from the known activity of eukaryotic homologs. Recently, activity was shown explicitly for the member from Mycoplasma pneumonia. Members of this family from alpha- and gamma-proteobacteria, designated ygfA, are often found in an operon with 6S structural RNA, and show a similar pattern of high expression during stationary phase. The function may be to deplete folate to slow 1-carbon biosynthetic metabolism [Central intermediary metabolism, One-carbon metabolism]. Length = 179

>gnl|CDD|216717 pfam01812, 5-FTHF_cyc-lig, 5-formyltetrahydrofolate cyclo-ligase family

 Score = 89.3 bits (222), Expect = 8e-23
 Identities = 40/156 (25%), Positives = 70/156 (44%), Gaps = 19/156 (12%)

Query: 24  KRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKL 83
           K+ LR Q+    +++    R+    A+ + +      + ++R+  Y+S     E+DT +L
Sbjct: 1   KQELRKQLLAKRRALSEEERAAASRALHQKLPSFVGAQKAKRVALYVSVK--GEIDTREL 58

Query: 84  LSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHIS-SIDDLIANSMNILEPAPVDAD 142
           +  +L+           K + +PR    +  +           L +    + EP     +
Sbjct: 59  IELLLEE---------GKLVLLPRPRPDSGLVVRITPYYPETGLPSGPYGLPEPI----E 105

Query: 143 GNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGG 178
             +RE    A   +DL L+PG+AFDR G RLGRGGG
Sbjct: 106 EEQREL---ALNQIDLVLVPGVAFDRQGYRLGRGGG 138

5-formyltetrahydrofolate cyclo-ligase or methenyl-THF synthetase EC:6.3.3.2 catalyzes the interchange of 5-formyltetrahydrofolate (5-FTHF) to 5-10-methenyltetrahydrofolate, this requires ATP and Mg2+. 5-FTHF is used in chemotherapy where it is clinically known as Leucovorin. Length = 182

>gnl|CDD|223290 COG0212, COG0212, 5-formyltetrahydrofolate cyclo-ligase [Coenzyme metabolism]

 Score = 88.5 bits (220), Expect = 2e-22
 Identities = 42/155 (27%), Positives = 66/155 (42%), Gaps = 19/155 (12%)

Query: 24  KRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKL 83
           K  LR  + +   ++ P  R   D  I K++      K ++ +  Y+  +   E+DT  L
Sbjct: 5   KSALRKLLLERRIALSPEERHEADQRIAKLLASLIEVKKAKTIALYVPFN--GEIDTRPL 62

Query: 84  LSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDDLIANSMNILEPAPVDADG 143
           + Q L+     G     K+L +P++ D       +    +  LI N   ILEP       
Sbjct: 63  IRQALR----RG-----KRLLLPKLRDYKLLFLRYIPDPLQPLIKNRFGILEP------- 106

Query: 144 NEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGG 178
                       +DL L+P +AFD+ G RLG GGG
Sbjct: 107 -GEYGRKIPPPEIDLVLVPLVAFDKQGYRLGYGGG 140

Length = 191

>gnl|CDD|182385 PRK10333, PRK10333, 5-formyltetrahydrofolate cyclo-ligase family protein; Provisional

 Score = 42.2 bits (99), Expect = 2e-05
 Identities = 29/103 (28%), Positives = 52/103 (50%), Gaps = 17/103 (16%)

Query: 77  EVDTSKLLSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMF-HISSIDDLIANSMNILE 135
           E+DT  L+ Q+ +           K++Y+P +   ++   +F +     +L+ N + I E
Sbjct: 46  ELDTQPLIEQLWR---------AGKRVYLPVLHPFSAGNLLFLNYHPQSELVMNRLKIHE 96

Query: 136 PAPVDADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGG 178
           P  +D       DV+  +  +D+ + P +AFD  G+RLG GGG
Sbjct: 97  PK-LDV-----RDVLPLSR-LDVLITPLVAFDEYGQRLGMGGG 132

Length = 182

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	178
PLN02812	211	5-formyltetrahydrofolate cyclo-ligase	100.0
TIGR02727	181	MTHFS_bact 5,10-methenyltetrahydrofolate synthetas	100.0
PF01812	186	5-FTHF_cyc-lig: 5-formyltetrahydrofolate cyclo-lig	100.0
PRK10333	182	5-formyltetrahydrofolate cyclo-ligase family prote	100.0
KOG3093	200	consensus 5-formyltetrahydrofolate cyclo-ligase [C	100.0
COG0212	191	5-formyltetrahydrofolate cyclo-ligase [Coenzyme me	100.0
KOG4410	396	consensus 5-formyltetrahydrofolate cyclo-ligase [C	97.33

>PLN02812 5-formyltetrahydrofolate cyclo-ligase

Probab=100.00  E-value=1.2e-38  Score=258.03  Aligned_cols=149  Identities=72%  Similarity=1.175  Sum_probs=127.7

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCcCccCCCeEEEEecCCCCC--CCChHHHHHHHHhCCCCCCC
Q 030395           19 SIFQQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALR--EVDTSKLLSQILQIPNADGD   96 (178)
Q Consensus        19 ~~~~~K~~LR~~~~~~R~~ls~~~~~~~s~~i~~~l~~~~~~~~a~~I~~Y~~~~~~~--Evdt~~li~~~~~~~~~~~~   96 (178)
                      .+.+.|++||++++++|++++++++...|..|+++|..++.++++++|++|+|++  +  ||||.+|++.+++       
T Consensus         2 ~~~~~K~~lR~~~~~~R~~l~~~~~~~~s~~i~~~l~~~~~~~~a~~I~~Y~~~~--~~~Evdt~~li~~~~~-------   72 (211)
T PLN02812          2 EIREQKKALRKEVRRALKALSPEQRAQEDAAIQSRLLELPWFKSSKRLCAYVSCA--KLREVDTSKILSEILQ-------   72 (211)
T ss_pred             hHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHcChhhHhcCEEEEEEECC--CCCCcCHHHHHHHHHH-------
Confidence            4667899999999999999999999999999999999999999999999999998  6  9999999999999       


Q ss_pred             CCCC-cEEEEeeeeCCCCceEEEEeCCC-CCcccCcCccCCCCCCCCCCCccccccCCCCCccEEEEccceecCCCCccc
Q 030395           97 TKTR-KKLYVPRVEDKNSHMRMFHISSI-DDLIANSMNILEPAPVDADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLG  174 (178)
Q Consensus        97 ~~~g-k~v~lP~v~~~~~~m~f~~~~~~-~~l~~g~~GI~EP~~~~~~~~~~~~~~~~~~~iDlvlVP~lAFD~~G~RLG  174 (178)
                        .| |+|+||+|...+..|.|+.|.+. ++|..|.|||+||.........+.+.......+|||||||||||++|+|||
T Consensus        73 --~g~k~v~lP~~~~~~~~m~f~~~~~~~~~l~~~~~gI~EP~~~~~~~~~~~~~~~~~~~iDliiVP~lafD~~G~RLG  150 (211)
T PLN02812         73 --NPDKRLYVPRVEDKNSNMRMLHITDMADDLVANSMNILEPTPVDADGNPREDVLQAPEPLDLLLLPGLAFDRSGRRLG  150 (211)
T ss_pred             --cCCcEEEEeEEecCCCeEEEEEeCCccccccCCCCCccCCCccccccccccccccCCCCCCEEEeCceEECCCCCcCc
Confidence              89 99999999765446999999986 789999999999975321110000011135678999999999999999999


Q ss_pred             cCCC
Q 030395          175 RGGG  178 (178)
Q Consensus       175 ~GgG  178 (178)
                      ||||
T Consensus       151 ~GgG  154 (211)
T PLN02812        151 RGGG  154 (211)
T ss_pred             CCCc
Confidence            9999

>TIGR02727 MTHFS_bact 5,10-methenyltetrahydrofolate synthetase

Probab=100.00  E-value=1.3e-36  Score=240.52  Aligned_cols=137  Identities=31%  Similarity=0.496  Sum_probs=121.1

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCcCccCCCeEEEEecCCCCCCCChHHHHHHHHhCCCCCCCCCCCcEE
Q 030395           24 KRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKLLSQILQIPNADGDTKTRKKL  103 (178)
Q Consensus        24 K~~LR~~~~~~R~~ls~~~~~~~s~~i~~~l~~~~~~~~a~~I~~Y~~~~~~~Evdt~~li~~~~~~~~~~~~~~~gk~v  103 (178)
                      |++||++++++|++++.+++...+..|+++|.+++.++++++|++|+|++  +|+||.+|++.+++         .||+|
T Consensus         1 K~~lR~~~~~~r~~l~~~~~~~~~~~i~~~l~~~~~~~~~~~I~~Y~~~~--~E~~t~~li~~~~~---------~~k~v   69 (181)
T TIGR02727         1 KKELRKKLLERRKALSSEERKAASEAIAKRLLALIEWKNAKTIALYLPLR--GEVDTRPLIEQLLK---------EGKRV   69 (181)
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhChhhhcCCEEEEEcCCC--CCcCHHHHHHHHHH---------CCCEE
Confidence            67999999999999999999999999999999999999999999999999  79999999999998         89999


Q ss_pred             EEeeeeCCC-CceEEEEeCCCCCcccCcCccCCCCCCCCCCCccccccCCCCCccEEEEccceecCCCCccccCCC
Q 030395          104 YVPRVEDKN-SHMRMFHISSIDDLIANSMNILEPAPVDADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGG  178 (178)
Q Consensus       104 ~lP~v~~~~-~~m~f~~~~~~~~l~~g~~GI~EP~~~~~~~~~~~~~~~~~~~iDlvlVP~lAFD~~G~RLG~GgG  178 (178)
                      +||+|...+ ..|.|..|...++|..|.|||+||.....       .......+|+|||||||||++|+|||||||
T Consensus        70 ~lP~~~~~~~~~~~~~~~~~~~~l~~~~~gi~eP~~~~~-------~~~~~~~idlvivP~lafD~~G~RLG~GgG  138 (181)
T TIGR02727        70 ALPKVDPDGKEMLFFRIWSPSDLLTKGKFGILEPPGDST-------EPVDPDEIDLIIVPGVAFDRRGYRLGYGGG  138 (181)
T ss_pred             EEEEEecCCCceeEEEecCCCCccccCCCCCCCCCCccc-------CcCCcccCCEEEeCceEEcCCCccccCCcc
Confidence            999997653 23667778877789999999999974310       013456899999999999999999999999

This enzyme, 5,10-methenyltetrahydrofolate synthetase, is also called 5-formyltetrahydrofolate cycloligase. Function of bacterial proteins in this family was inferred originally from the known activity of eukaryotic homologs. Recently, activity was shown explicitly for the member from Mycoplasma pneumonia. Members of this family from alpha- and gamma-proteobacteria, designated ygfA, are often found in an operon with 6S structural RNA, and show a similar pattern of high expression during stationary phase. The function may be to deplete folate to slow 1-carbon biosynthetic metabolism.

>PF01812 5-FTHF_cyc-lig: 5-formyltetrahydrofolate cyclo-ligase family; InterPro: IPR002698 5-formyltetrahydrofolate cyclo-ligase or methenyl-THF synthetase 6

Probab=100.00  E-value=3.1e-37  Score=244.36  Aligned_cols=137  Identities=35%  Similarity=0.598  Sum_probs=112.4

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCcCccCCCeEEEEecCCCCCCCChHHHHHHHHhCCCCCCCCCCCcEE
Q 030395           24 KRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKLLSQILQIPNADGDTKTRKKL  103 (178)
Q Consensus        24 K~~LR~~~~~~R~~ls~~~~~~~s~~i~~~l~~~~~~~~a~~I~~Y~~~~~~~Evdt~~li~~~~~~~~~~~~~~~gk~v  103 (178)
                      |++||++++++|++|+++++...|..|+++|.+++.++++++|++|+|++  +||||.+|++.+++         .||+|
T Consensus         1 K~~lR~~~~~~r~~l~~~~~~~~s~~i~~~l~~~~~~~~a~~I~~y~~~~--~Ev~t~~li~~~~~---------~gk~v   69 (186)
T PF01812_consen    1 KKELRKEIRARRRALSPEERAEASQAICERLLALPEYRKAQTIALYLPMG--GEVDTRPLIERALK---------DGKRV   69 (186)
T ss_dssp             HHHHHHHHHHHHHTS-HHHHHHHHHHHHHHHHCCHHHHCTSEEEE----T--TS---HHHHHHHHH---------TTCEE
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhChhhhhhceEEEccCCC--CCCCHHHHHHHHHH---------cCCeE
Confidence            89999999999999999999999999999999999999999999999998  79999999999999         99999


Q ss_pred             EEeeeeCCC---CceEEEEeCCCCCcccCcCccCCCCCCCCCCCccccccCCCCCccEEEEccceecCCCCccccCCC
Q 030395          104 YVPRVEDKN---SHMRMFHISSIDDLIANSMNILEPAPVDADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGG  178 (178)
Q Consensus       104 ~lP~v~~~~---~~m~f~~~~~~~~l~~g~~GI~EP~~~~~~~~~~~~~~~~~~~iDlvlVP~lAFD~~G~RLG~GgG  178 (178)
                      ++|++..+.   ..|.|+.+...++|.+|.|||+||.....       .......+|+|||||||||++|+|||||||
T Consensus        70 ~lP~~~~~~~~~~~~~~~~~~~~~~l~~~~~gI~EP~~~~~-------~~~~~~~idlvlVP~lafd~~G~RLG~GgG  140 (186)
T PF01812_consen   70 YLPRVHPDDGRMRMMEFRRYDSDDPLEKGRFGIPEPDGESP-------PPDPPEEIDLVLVPGLAFDRNGNRLGYGGG  140 (186)
T ss_dssp             EEEEEETTCTEECEEEEEEESSCGCCEECETTCEEEESTCS-------EEGGGGG-SEEEEE-SEEETTSBEE-SSST
T ss_pred             ecceecccccccceeEEeecCCcccccccccCccCCccccc-------cccccccCCEEEeCcEEECCCCCeEecCCC
Confidence            999998765   35778889888999999999999986421       111123799999999999999999999999

3.3.2 from EC catalyses the interchange of 5-formyltetrahydrofolate (5-FTHF) to 5-10-methenyltetrahydrofolate, this requires ATP and Mg2+ []. 5-FTHF is used in chemotherapy where it is clinically known as Leucovorin [].; GO: 0005524 ATP binding, 0030272 5-formyltetrahydrofolate cyclo-ligase activity, 0009396 folic acid-containing compound biosynthetic process; PDB: 1WKC_A 1SBQ_A 1U3G_A 1U3F_B 1YDM_B 1SOU_A 2JCB_B 3HY6_A 3HY4_A 3HXT_A ....

>PRK10333 5-formyltetrahydrofolate cyclo-ligase family protein; Provisional

Probab=100.00  E-value=2.4e-36  Score=239.52  Aligned_cols=130  Identities=22%  Similarity=0.432  Sum_probs=116.4

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHHHHhCcCccCCCeEEEEecCCCCCCCChHHHHHHHHhCCCCCCCCCCCcEEEEeeeeC
Q 030395           31 VRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKLLSQILQIPNADGDTKTRKKLYVPRVED  110 (178)
Q Consensus        31 ~~~~R~~ls~~~~~~~s~~i~~~l~~~~~~~~a~~I~~Y~~~~~~~Evdt~~li~~~~~~~~~~~~~~~gk~v~lP~v~~  110 (178)
                      ++++|++++++++...|++|+++|.+++.|+++++|++|+|++  +||||.+||+.+++         .||+|+||+|.+
T Consensus         2 ~~~~R~~l~~~~~~~~s~~i~~~l~~~~~~~~a~~I~~Y~~~~--~Evdt~~li~~~~~---------~gk~v~lP~v~~   70 (182)
T PRK10333          2 IRQRRRALTPEQQQEMGQQAATRMMTYPPVVMAHTVAVFLSFD--GELDTQPLIEQLWR---------AGKRVYLPVLHP   70 (182)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHhChhhhcCCEEEEEcCCC--CCcCHHHHHHHHHH---------CCCEEEEeEEec
Confidence            5788999999999999999999999999999999999999998  79999999999999         899999999975


Q ss_pred             C-CCceEEEEeCCCCCcccCcCccCCCCCCCCCCCccccccCCCCCccEEEEccceecCCCCccccCCC
Q 030395          111 K-NSHMRMFHISSIDDLIANSMNILEPAPVDADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGG  178 (178)
Q Consensus       111 ~-~~~m~f~~~~~~~~l~~g~~GI~EP~~~~~~~~~~~~~~~~~~~iDlvlVP~lAFD~~G~RLG~GgG  178 (178)
                      . ...|.|+.|.+.++|.+|.|||+||.....       .......+|+|||||||||++|+|||||||
T Consensus        71 ~~~~~m~f~~~~~~~~l~~~~~gI~EP~~~~~-------~~~~~~~iDlviVP~laFD~~G~RLG~GgG  132 (182)
T PRK10333         71 FSAGNLLFLNYHPQSELVMNRLKIHEPKLDVR-------DVLPLSRLDVLITPLVAFDEYGQRLGMGGG  132 (182)
T ss_pred             CCCCEEEEEECCCCCccccCCCCCCCCCcccc-------ccCCcccCCEEEeCceEECCCCCcccCCcc
Confidence            4 246999999998999999999999975311       112356789999999999999999999999

>KOG3093 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]

Probab=100.00  E-value=3.3e-34  Score=223.79  Aligned_cols=147  Identities=39%  Similarity=0.749  Sum_probs=129.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCcCccCCCeEEEEecCCCCCCCChHHHHHHHHhCCCCCCCC
Q 030395           18 ESIFQQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKLLSQILQIPNADGDT   97 (178)
Q Consensus        18 ~~~~~~K~~LR~~~~~~R~~ls~~~~~~~s~~i~~~l~~~~~~~~a~~I~~Y~~~~~~~Evdt~~li~~~~~~~~~~~~~   97 (178)
                      +.+...|+.||+.+++..++|+++.+..+|+.|++++++++.|+++++|++|+||.+ +||+|..||+.+++        
T Consensus         2 ~~i~~~K~~LR~~lk~~L~ald~e~i~rQs~ai~~kV~e~~~fk~skrvs~YmSm~~-~Ev~T~~Ii~~~fq--------   72 (200)
T KOG3093|consen    2 DAISATKRLLRRQLKRSLGALDAEIIARQSEAISKKVLELPWFKNSKRVSIYMSMDK-GEVDTGEIIKEAFQ--------   72 (200)
T ss_pred             chHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHhhHHHHhcCceEEEEecCc-ccccHHHHHHHHHh--------
Confidence            457888999999999999999999999999999999999999999999999999995 59999999999999        


Q ss_pred             CCCcEEEEeeeeCCCCceEEEEeCCCCC---cccCcCccCCCCCCCCCCCccccccCCCCCccEEEEccceecCCCCccc
Q 030395           98 KTRKKLYVPRVEDKNSHMRMFHISSIDD---LIANSMNILEPAPVDADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLG  174 (178)
Q Consensus        98 ~~gk~v~lP~v~~~~~~m~f~~~~~~~~---l~~g~~GI~EP~~~~~~~~~~~~~~~~~~~iDlvlVP~lAFD~~G~RLG  174 (178)
                       .||.||+|+|...+..|.+.++...+.   |..+.|||++|.+..    .+++.......+|||||||||||+.|.|||
T Consensus        73 -~gK~vFiP~~~~~~s~m~Mvr~~~~e~~~~l~~t~w~i~qp~~~~----~re~~~~t~~~lDLiivPGvAFd~~g~RlG  147 (200)
T KOG3093|consen   73 -DGKEVFIPRCTHTSSKMDMVRIDHMEELESLPMTSWGIRQPKPGG----PREDALETGHPLDLIIVPGVAFDRKGARLG  147 (200)
T ss_pred             -cCCeEEeeeeecCCCceeEEEeCChHHHhhCcccccCCCCCCCCC----chhhhccCCCcceEEEecccccchhhhhcc
Confidence             999999999977667899999987654   456789999998642    334433333369999999999999999999


Q ss_pred             cCCC
Q 030395          175 RGGG  178 (178)
Q Consensus       175 ~GgG  178 (178)
                      +|+|
T Consensus       148 hGkG  151 (200)
T KOG3093|consen  148 HGKG  151 (200)
T ss_pred             CCcc
Confidence            9998

>COG0212 5-formyltetrahydrofolate cyclo-ligase [Coenzyme metabolism]

Probab=100.00  E-value=8.8e-32  Score=214.95  Aligned_cols=137  Identities=30%  Similarity=0.495  Sum_probs=123.2

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCcCccCCCeEEEEecCCCCCCCChHHHHHHHHhCCCCCCCCCCC
Q 030395           21 FQQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKLLSQILQIPNADGDTKTR  100 (178)
Q Consensus        21 ~~~K~~LR~~~~~~R~~ls~~~~~~~s~~i~~~l~~~~~~~~a~~I~~Y~~~~~~~Evdt~~li~~~~~~~~~~~~~~~g  100 (178)
                      .+.|++||+.++++|.++++..+...+..+++++..++.+.++++|++|+|++  +|+||.++++.+|+         +|
T Consensus         2 ~~~K~~lR~~~~~~r~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~ia~y~~~~--~E~~~~~l~~~~l~---------~g   70 (191)
T COG0212           2 MATKSALRKLLLERRIALSPEERHEADQRIAKLLASLIEVKKAKTIALYVPFN--GEIDTRPLIRQALR---------RG   70 (191)
T ss_pred             chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccccccccEEEEEeccC--CCCCcHHHHHHHHH---------cC
Confidence            36799999999999999999999999999999999999999999999999999  79999999999999         99


Q ss_pred             cEEEEeeeeCCCCceEEEEeCCC--CCcccCcCccCCCCCCCCCCCccccccCCCCCccEEEEccceecCCCCccccCCC
Q 030395          101 KKLYVPRVEDKNSHMRMFHISSI--DDLIANSMNILEPAPVDADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGG  178 (178)
Q Consensus       101 k~v~lP~v~~~~~~m~f~~~~~~--~~l~~g~~GI~EP~~~~~~~~~~~~~~~~~~~iDlvlVP~lAFD~~G~RLG~GgG  178 (178)
                      |+|+||++.+  ..+.|..|.+.  ..+..+.|||.||.....       . ..+..+|+||||+||||++|+|||||||
T Consensus        71 k~l~lP~~~~--~~~~f~~~~~~~~~~~~~~~~gi~eP~~~~~-------~-~~~~~iDlvlvP~Vafd~~G~RLG~GgG  140 (191)
T COG0212          71 KRLLLPKLRD--YKLLFLRYIPDPLQPLIKNRFGILEPGEYGR-------K-IPPPEIDLVLVPLVAFDKQGYRLGYGGG  140 (191)
T ss_pred             CEEEEeEEEc--CcceeEEecCCCCcccccccccccCCCccCC-------c-cCCCcCCEEEeCceeECCCCccccCCCc
Confidence            9999999985  35889999888  889999999999986421       1 1226789999999999999999999999

>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]

Probab=97.33  E-value=0.00077  Score=56.97  Aligned_cols=131  Identities=20%  Similarity=0.286  Sum_probs=84.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhc----CCHH---HHH---HHHHHHHHHHHhCcCccCCCeEEEEecCCCCCCCChHHHHHHH
Q 030395           18 ESIFQQKRILRSQVRKTLKS----MDPS---LRS---HEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKLLSQI   87 (178)
Q Consensus        18 ~~~~~~K~~LR~~~~~~R~~----ls~~---~~~---~~s~~i~~~l~~~~~~~~a~~I~~Y~~~~~~~Evdt~~li~~~   87 (178)
                      +++...|..||.+++....+    +++.   .|.   ..+...|+.|.++..|+.|+.|-+-..-      .+..+-..+
T Consensus        28 qd~~~~k~~iR~q~W~~me~~n~a~~prpvhhRIPnFvGa~~Aa~~~a~ld~F~~Aq~vKVnpD~------pl~~~r~L~  101 (396)
T KOG4410|consen   28 QDIEPTKRSIRVQTWKKMEEGNVAIGPRPVHHRIPNFVGADKAAALFANLDEFKKAQHVKVNPDR------PLHEFRELA  101 (396)
T ss_pred             CCcchhHHHHHHHHHHHHhhcccccCCcchhhcCccccchHHHHHHhhhhHHHhhcceeecCCCc------hHHHHHHHH
Confidence            45677899999999987654    2221   111   3456778888888899999998865322      244555555


Q ss_pred             HhCCCCCCCCCCCcEEEEeeeeCCCCceEEEEeCCCCC-----c-----ccC--cCccCCCCCCCCCCCccccccCCCCC
Q 030395           88 LQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDD-----L-----IAN--SMNILEPAPVDADGNEREDVMQANEP  155 (178)
Q Consensus        88 ~~~~~~~~~~~~gk~v~lP~v~~~~~~m~f~~~~~~~~-----l-----~~g--~~GI~EP~~~~~~~~~~~~~~~~~~~  155 (178)
                      +.         ..|.+++|-.....  =.|..++...+     +     ..|  .|+  -|.+-           -+--.
T Consensus       102 L~---------~~Ksll~PspRlrt--glf~kv~~~~~ate~i~~~c~tsqgv~ky~--~~IGL-----------Ds~lk  157 (396)
T KOG4410|consen  102 LL---------ADKSLLLPSPRLRT--GLFLKVDVLADATEEIKKECLTSQGVQKYR--SEIGL-----------DSGLK  157 (396)
T ss_pred             hh---------cccceecCCchhhc--ceeeeeccCCCCcHHHHHHHHhhhhHHHhC--ccccc-----------ccCce
Confidence            65         67999999875432  23555544211     1     111  232  22211           11225


Q ss_pred             ccEEEEccceecCCCCccccCCC
Q 030395          156 VDLFLLPGLAFDRSGRRLGRGGG  178 (178)
Q Consensus       156 iDlvlVP~lAFD~~G~RLG~GgG  178 (178)
                      +|||+|-.||+++.|+|||.|-|
T Consensus       158 vDlvViGSVavs~~G~RiGkGeG  180 (396)
T KOG4410|consen  158 VDLVVIGSVAVSREGYRIGKGEG  180 (396)
T ss_pred             EEEEEEeeEEecccceeeccCCc
Confidence            79999999999999999999977

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	178
3hxt_A	203	Structure Of Human Mthfs Length = 203		4e-08
1sou_A	194	Nmr Structure Of Aquifex Aeolicus 5,10- Methenyltet		5e-04

>pdb|3HXT|A Chain A, Structure Of Human Mthfs Length = 203

Iteration: 1
 Score = 53.9 bits (128), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 74/148 (50%), Gaps = 21/148 (14%)
Query: 24  KRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKL 83
           KR LR ++++ L++M    R  +   + + V+    ++ S+R+  ++S     E++T ++
Sbjct: 10  KRSLRGELKQRLRAMSAEERLRQSRVLSQKVIAHSEYQKSKRISIFLSMQD--EIETEEI 67
Query: 84  LSQILQIPNADGDTKTRKKL-YVPRVEDKNSHMRMFHISS---IDDLIANSMNILEPAPV 139
           +  I Q          R K+ ++PR   +++HM M  I S   I  L   S NI +P   
Sbjct: 68  IKDIFQ----------RGKICFIPRYRFQSNHMDMVRIESPEEISLLPKTSWNIPQP--- 114
Query: 140 DADGNEREDVMQANEPVDLFLLPGLAFD 167
             +G+ RE+ +     +DL  +PGL FD
Sbjct: 115 -GEGDVREEALSTG-GLDLIFMPGLGFD 140

>pdb|1SOU|A Chain A, Nmr Structure Of Aquifex Aeolicus 5,10- Methenyltetrahydrofolate Synthetase: Northeast Structural Genomics Consortium Target Qr46 Length = 194

Iteration: 1
 Score = 40.4 bits (93), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 68/146 (46%), Gaps = 27/146 (18%)
Query: 26  ILRSQVRKTLKSMDPSLRSHEDNAIQKIVLE----APWFKSSQRLCAYISCSALREVDTS 81
           +L+S++RK +     +L   E   + + V+      P FK S+++  Y  C    EVD +
Sbjct: 1   MLKSELRKKVLHKRINLSEEERRRLSEKVISNLKSLPEFKKSKKVALY--CPIKGEVDLT 58
Query: 82  KLLSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDDLIANSMNILEPAPVDA 141
            L  ++L+           K+L +P+VE   + + ++ + S   L   +  I+EP  V+ 
Sbjct: 59  PLFPEVLK----------EKELILPKVE--GNEISLYRVHSPACLGVGAFGIMEP--VEG 104
Query: 142 DGNEREDVMQANEPVDLFLLPGLAFD 167
           +    EDV       D   +PG+AFD
Sbjct: 105 ERVNPEDV-------DFIAVPGVAFD 123

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	178
3hy3_A	203	5-formyltetrahydrofolate cyclo-ligase; antifolate,	5e-42
2jcb_A	200	5-formyltetrahydrofolate cyclo-ligase family PROT;	1e-41
1ydm_A	187	Hypothetical protein YQGN; northeast structural ge	1e-40
1sou_A	194	5,10-methenyltetrahydrofolate synthetase; structur	3e-33
1wkc_A	184	HB8 TT1367 protein; structural genomics, riken str	6e-28
1sbq_A	189	H91_ORF164, 5,10-methenyltetrahydrofolate syntheta	9e-22

>3hy3_A 5-formyltetrahydrofolate cyclo-ligase; antifolate, cancer, ATP-binding, binding, magnesium, nucleotide-binding; HET: 10F; 1.80A {Homo sapiens} PDB: 3hxt_A* 3hy4_A* 3hy6_A Length = 203

 Score =  138 bits (350), Expect = 5e-42
 Identities = 46/164 (28%), Positives = 82/164 (50%), Gaps = 19/164 (11%)

Query: 18  ESIFQQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALRE 77
            ++   KR LR ++++ L++M    R  +   + + V+    ++ S+R+  ++S     E
Sbjct: 4   AAVSSAKRSLRGELKQRLRAMSAEERLRQSRVLSQKVIAHSEYQKSKRISIFLSMQ--DE 61

Query: 78  VDTSKLLSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDD---LIANSMNIL 134
           ++T +++  I Q     G     K  ++PR   +++HM M  I S ++   L   S NI 
Sbjct: 62  IETEEIIKDIFQ----RG-----KICFIPRYRFQSNHMDMVRIESPEEISLLPKTSWNIP 112

Query: 135 EPAPVDADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGG 178
           +P      G+ RE+ +      DL  +PGL FD+ G RLGRG G
Sbjct: 113 QPGE----GDVREEALSTGGL-DLIFMPGLGFDKHGNRLGRGKG 151

>2jcb_A 5-formyltetrahydrofolate cyclo-ligase family PROT; folate metabolism; HET: ADP; 1.6A {Bacillus anthracis} Length = 200

 Score =  137 bits (348), Expect = 1e-41
 Identities = 39/164 (23%), Positives = 71/164 (43%), Gaps = 18/164 (10%)

Query: 15  HDLESIFQQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSA 74
           H    + ++K  LR Q+ + + S+     +     I   + E   +  ++ +   +S   
Sbjct: 4   HHHHHVREEKLRLRKQIIEHMNSLSKERYTTLSEQIVFSLYEQKEWAEAKTIGITLSME- 62

Query: 75  LREVDTSKLLSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDDLIANSMNIL 134
             EV+T  ++ +           K  K++ VP+   +   M    IS+ D L    MN+ 
Sbjct: 63  -NEVNTYPIIEKAW---------KEGKRVVVPKCNKETRTMSFRQISNFDQLETVYMNLR 112

Query: 135 EPAPVDADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGG 178
           EP P         + + A+E  DL ++PG+A+   G R+G GGG
Sbjct: 113 EPIP------ALTEEVNADEI-DLQIVPGVAYTERGERIGYGGG 149

>1ydm_A Hypothetical protein YQGN; northeast structural genomics, SR44, X-RAY, PSI, protein structure initiative; 2.50A {Bacillus subtilis} Length = 187

 Score =  134 bits (340), Expect = 1e-40
 Identities = 33/155 (21%), Positives = 66/155 (42%), Gaps = 18/155 (11%)

Query: 24  KRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKL 83
           K  LR +  + L ++       +   + K +   P ++++  +   IS     E+ T  +
Sbjct: 2   KSQLRKKTLEALSALSNEDILQKTERMYKYLFSLPEWQNAGTIAVTISRG--LEIPTRPV 59

Query: 84  LSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDDLIANSMNILEPAPVDADG 143
           + Q  +    +G     K++ +P+       M+     + D L      +LEP       
Sbjct: 60  IEQAWE----EG-----KQVCIPKCHPDTKKMQFRTYQTDDQLETVYAGLLEPVI----- 105

Query: 144 NEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGG 178
            E+   +  ++  DL ++PG+ FD +G R+G GGG
Sbjct: 106 -EKTKEVNPSQI-DLMIVPGVCFDVNGFRVGFGGG 138

>1sou_A 5,10-methenyltetrahydrofolate synthetase; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium; NMR {Aquifex aeolicus} SCOP: c.124.1.6 Length = 194

 Score =  115 bits (291), Expect = 3e-33
 Identities = 38/155 (24%), Positives = 64/155 (41%), Gaps = 23/155 (14%)

Query: 24  KRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKL 83
           K  LR +V     ++    R      +   +   P FK S+++  Y       EVD + L
Sbjct: 3   KSELRKKVLHKRINLSEEERRRLSEKVISNLKSLPEFKKSKKVALYCPIK--GEVDLTPL 60

Query: 84  LSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDDLIANSMNILEPAPVDADG 143
             ++L+           K+L +P+VE     + ++ + S   L   +  I+EP       
Sbjct: 61  FPEVLK----------EKELILPKVEGN--EISLYRVHSPACLGVGAFGIMEPVE----- 103

Query: 144 NEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGG 178
               + +   + VD   +PG+AFD  G RLG G G
Sbjct: 104 ---GERVNPED-VDFIAVPGVAFDLEGYRLGFGKG 134

>1wkc_A HB8 TT1367 protein; structural genomics, riken structural genomics/proteomi initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.124.1.6 Length = 184

 Score =  101 bits (255), Expect = 6e-28
 Identities = 35/155 (22%), Positives = 52/155 (33%), Gaps = 32/155 (20%)

Query: 24  KRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKL 83
           K  LR + R   + +D    S    A+   +L     +  + +  Y       E++   L
Sbjct: 3   KAELRRRARAAWRRLDLKALSR---AVGAALLPWLRERGFRHILLYHPLP--HELNLLPL 57

Query: 84  LSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDDLIANSMNILEPAPVDADG 143
           +                 + Y+P+V  K       H      L      +LEP       
Sbjct: 58  MEAY------------PARYYLPKVAGKG---LTVH--PFGPLAPGPFGLLEPTT----- 95

Query: 144 NEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGG 178
                        DL ++PGLAFDR G RLG G G
Sbjct: 96  ----PPEDPRVL-DLVVVPGLAFDREGYRLGHGQG 125

>1sbq_A H91_ORF164, 5,10-methenyltetrahydrofolate synthetase homolog; MTHFS, 5- formyltetrahydrofolate cyclo-ligase, structural genomics; 2.20A {Mycoplasma pneumoniae} SCOP: c.124.1.6 PDB: 1u3f_A* 1u3g_A* Length = 189

 Score = 86.2 bits (214), Expect = 9e-22
 Identities = 29/161 (18%), Positives = 52/161 (32%), Gaps = 38/161 (23%)

Query: 19  SIFQQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAP-WFKSSQRLCAYISCSALRE 77
                K  LR Q+ +   ++    +SH D  I + ++         + +  Y       E
Sbjct: 23  QGHMDKNALRKQILQKRMALSTIEKSHLDQKINQKLVAFLTPKPCIKTIALYEPIK--NE 80

Query: 78  VDTSKLLSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDDLIANSMNILEPA 137
           V       + L+          + +   P+V   ++ +           I    N  EP 
Sbjct: 81  VTFVDFFFEFLK--------INQIRAVYPKVI-SDTEI---------IFIDQETNTFEP- 121

Query: 138 PVDADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGG 178
                          N+  D FL+P + F++   RLG G G
Sbjct: 122 ---------------NQI-DCFLIPLVGFNKDNYRLGFGKG 146

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	178
3hy3_A	203	5-formyltetrahydrofolate cyclo-ligase; antifolate,	100.0
2jcb_A	200	5-formyltetrahydrofolate cyclo-ligase family PROT;	100.0
1ydm_A	187	Hypothetical protein YQGN; northeast structural ge	100.0
1sou_A	194	5,10-methenyltetrahydrofolate synthetase; structur	100.0
1wkc_A	184	HB8 TT1367 protein; structural genomics, riken str	100.0
1sbq_A	189	H91_ORF164, 5,10-methenyltetrahydrofolate syntheta	100.0

>3hy3_A 5-formyltetrahydrofolate cyclo-ligase; antifolate, cancer, ATP-binding, binding, magnesium, nucleotide-binding; HET: 10F; 1.80A {Homo sapiens} PDB: 3hxt_A* 3hy4_A* 3hy6_A

Probab=100.00  E-value=1.3e-40  Score=266.59  Aligned_cols=147  Identities=31%  Similarity=0.563  Sum_probs=129.5

Q ss_pred             chHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCcCccCCCeEEEEecCCCCCCCChHHHHHHHHhCCCCCC
Q 030395           16 DLESIFQQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKLLSQILQIPNADG   95 (178)
Q Consensus        16 ~~~~~~~~K~~LR~~~~~~R~~ls~~~~~~~s~~i~~~l~~~~~~~~a~~I~~Y~~~~~~~Evdt~~li~~~~~~~~~~~   95 (178)
                      .|+++.+.|++||++++++|++|+++++..+|..|+++|++++.|+++++|++|+|++  +||||.+||+.+|+      
T Consensus         2 ~~~~~~~~K~~LR~~~~~~R~~l~~~~~~~~s~~i~~~l~~~~~~~~a~~I~~Y~~~~--~Evdt~~li~~~~~------   73 (203)
T 3hy3_A            2 AAAAVSSAKRSLRGELKQRLRAMSAEERLRQSRVLSQKVIAHSEYQKSKRISIFLSMQ--DEIETEEIIKDIFQ------   73 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTCHHHHHCSEEECCCCCT--TSCCCHHHHHHHHH------
T ss_pred             chhHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCHhhhcCCEEEEEcCCC--CCcCHHHHHHHHHH------
Confidence            3667889999999999999999999999999999999999999999999999999999  79999999999999      


Q ss_pred             CCCCCcEEEEeeeeCCCCceEEEEeCCCC---CcccCcCccCCCCCCCCCCCccccccCCCCCccEEEEccceecCCCCc
Q 030395           96 DTKTRKKLYVPRVEDKNSHMRMFHISSID---DLIANSMNILEPAPVDADGNEREDVMQANEPVDLFLLPGLAFDRSGRR  172 (178)
Q Consensus        96 ~~~~gk~v~lP~v~~~~~~m~f~~~~~~~---~l~~g~~GI~EP~~~~~~~~~~~~~~~~~~~iDlvlVP~lAFD~~G~R  172 (178)
                         .||+|+||+|...+..|.|+.|.+.+   +|.+|.|||+||.....    ..+. ..+..+|||||||||||++|+|
T Consensus        74 ---~gk~v~lP~~~~~~~~m~~~~~~~~~~~~~L~~g~~GI~EP~~~~~----~~~~-~~~~~~DlvlVP~vaFD~~G~R  145 (203)
T 3hy3_A           74 ---RGKICFIPRYRFQSNHMDMVRIESPEEISLLPKTSWNIPQPGEGDV----REEA-LSTGGLDLIFMPGLGFDKHGNR  145 (203)
T ss_dssp             ---TTCEEEEEEEETTTTEEEEEEECCHHHHTTSCBCTTSCBCCCTTCC----CCBG-GGTTCCSEEEECCSEECTTCCE
T ss_pred             ---CCCEEEEEEEecCCCeEEEEEeCChhhhhhccCCCCCCCCCCCccc----cccc-cCccCCCEEEeCCeEECCCCce
Confidence               99999999997655579999998764   57899999999975311    0111 2345799999999999999999


Q ss_pred             cccCCC
Q 030395          173 LGRGGG  178 (178)
Q Consensus       173 LG~GgG  178 (178)
                      ||||||
T Consensus       146 LG~GgG  151 (203)
T 3hy3_A          146 LGRGKG  151 (203)
T ss_dssp             ECSSSC
T ss_pred             ecCCCc
Confidence            999999

>2jcb_A 5-formyltetrahydrofolate cyclo-ligase family PROT; folate metabolism; HET: ADP; 1.6A {Bacillus anthracis}

Probab=100.00  E-value=6.5e-40  Score=262.35  Aligned_cols=142  Identities=25%  Similarity=0.421  Sum_probs=128.5

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCcCccCCCeEEEEecCCCCCCCChHHHHHHHHhCCCCCCCCC
Q 030395           19 SIFQQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKLLSQILQIPNADGDTK   98 (178)
Q Consensus        19 ~~~~~K~~LR~~~~~~R~~ls~~~~~~~s~~i~~~l~~~~~~~~a~~I~~Y~~~~~~~Evdt~~li~~~~~~~~~~~~~~   98 (178)
                      .+++.|++||++++++|++|+++++..+|..|+++|.+++.|+++++|++|+|++  +||||.+|++.+|+         
T Consensus         8 ~~~~~K~~LR~~~~~~R~~ls~~~~~~~s~~i~~~l~~~~~~~~a~~I~~Y~~~~--~Evdt~~li~~~~~---------   76 (200)
T 2jcb_A            8 HVREEKLRLRKQIIEHMNSLSKERYTTLSEQIVFSLYEQKEWAEAKTIGITLSME--NEVNTYPIIEKAWK---------   76 (200)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTSHHHHHCSEEECCCCCT--TSCCCHHHHHHHHH---------
T ss_pred             hhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhChhhhcCCEEEEECCCC--CCCCHHHHHHHHHH---------
Confidence            5788999999999999999999999999999999999999999999999999998  79999999999999         


Q ss_pred             CCcEEEEeeeeCCCCceEEEEeCCCCCcccCcCccCCCCCCCCCCCccccccCCCCCccEEEEccceecCCCCccccCCC
Q 030395           99 TRKKLYVPRVEDKNSHMRMFHISSIDDLIANSMNILEPAPVDADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGG  178 (178)
Q Consensus        99 ~gk~v~lP~v~~~~~~m~f~~~~~~~~l~~g~~GI~EP~~~~~~~~~~~~~~~~~~~iDlvlVP~lAFD~~G~RLG~GgG  178 (178)
                      .||+|+||++...++.|.|+.|++.++|.+|.|||+||....      .. ...+..+|+|||||||||++|+|||||||
T Consensus        77 ~gk~v~lP~~~~~~~~m~f~~~~~~~~L~~g~~GI~EP~~~~------~~-~~~~~~iDlvlVP~vAfD~~G~RLG~GgG  149 (200)
T 2jcb_A           77 EGKRVVVPKCNKETRTMSFRQISNFDQLETVYMNLREPIPAL------TE-EVNADEIDLQIVPGVAYTERGERIGYGGG  149 (200)
T ss_dssp             TTCEEEEEEEETTTTEEEEEEESSGGGEEEEETTEEEECGGG------CE-ECCGGGCSEEECCCSEECTTSCEECSSSC
T ss_pred             CCCEEEEeEEEcCCCcEEEEEeCCCcccccCCCCCCCCCCcc------cc-cCCccCCCEEEECCeEECCCCCeeccCCc
Confidence            999999999975455799999999889999999999997421      00 12345789999999999999999999999

>1ydm_A Hypothetical protein YQGN; northeast structural genomics, SR44, X-RAY, PSI, protein structure initiative; 2.50A {Bacillus subtilis}

Probab=100.00  E-value=2.4e-39  Score=256.30  Aligned_cols=138  Identities=22%  Similarity=0.385  Sum_probs=119.6

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCcCccCCCeEEEEecCCCCCCCChHHHHHHHHhCCCCCCCCCCCcE
Q 030395           23 QKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKLLSQILQIPNADGDTKTRKK  102 (178)
Q Consensus        23 ~K~~LR~~~~~~R~~ls~~~~~~~s~~i~~~l~~~~~~~~a~~I~~Y~~~~~~~Evdt~~li~~~~~~~~~~~~~~~gk~  102 (178)
                      .|++||++++++|++++++++...|..|+++|.+++.|+++++|++|+|++  +||||.+|++.+|+         .||+
T Consensus         1 ~K~~lR~~~~~~r~~l~~~~~~~~s~~i~~~l~~~~~~~~a~~I~~y~~~~--~Evdt~~li~~~~~---------~gk~   69 (187)
T 1ydm_A            1 MKSQLRKKTLEALSALSNEDILQKTERMYKYLFSLPEWQNAGTIAVTISRG--LEIPTRPVIEQAWE---------EGKQ   69 (187)
T ss_dssp             ---CHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTSHHHHTCSEEECCCCCT--TSCCCHHHHHHHHH---------TTCE
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCHHhhhCCEEEEECCCC--CCCCHHHHHHHHHH---------CCCE
Confidence            388999999999999999999999999999999999999999999999998  79999999999999         9999


Q ss_pred             EEEeeeeCCCCceEEEEeCCCCCcccCcCccCCCCCCCCCCCccccccCCCCCccEEEEccceecCCCCccccCCC
Q 030395          103 LYVPRVEDKNSHMRMFHISSIDDLIANSMNILEPAPVDADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGG  178 (178)
Q Consensus       103 v~lP~v~~~~~~m~f~~~~~~~~l~~g~~GI~EP~~~~~~~~~~~~~~~~~~~iDlvlVP~lAFD~~G~RLG~GgG  178 (178)
                      |+||++...++.|.|+.|++.++|.+|.|||+||.....      . ......+|+|||||||||++|+|||||||
T Consensus        70 v~lP~~~~~~~~m~f~~~~~~~~L~~~~~gi~EP~~~~~------~-~~~~~~iDlvivP~vafD~~G~RLG~GgG  138 (187)
T 1ydm_A           70 VCIPKCHPDTKKMQFRTYQTDDQLETVYAGLLEPVIEKT------K-EVNPSQIDLMIVPGVCFDVNGFRVGFGGG  138 (187)
T ss_dssp             EEEECC---CCCCCEEECCCCTTHHHHHTTSCCCC--CC------C-CCCGGGCCEEECCCSEEETTSCEECCSCC
T ss_pred             EEEeEEecCCCcEEEEEeCCCCccCcCCCCCCCCCCccc------c-cCCccCCCEEEeCCeEECCCCCcccCCcc
Confidence            999999643457999999998899999999999974210      0 12345789999999999999999999999

>1sou_A 5,10-methenyltetrahydrofolate synthetase; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium; NMR {Aquifex aeolicus} SCOP: c.124.1.6

Probab=100.00  E-value=8.5e-38  Score=248.91  Aligned_cols=133  Identities=29%  Similarity=0.471  Sum_probs=121.1

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCcCccCCCeEEEEecCCCCCCCChHHHHHHHHhCCCCCCCCCCCcE
Q 030395           23 QKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKLLSQILQIPNADGDTKTRKK  102 (178)
Q Consensus        23 ~K~~LR~~~~~~R~~ls~~~~~~~s~~i~~~l~~~~~~~~a~~I~~Y~~~~~~~Evdt~~li~~~~~~~~~~~~~~~gk~  102 (178)
                      .|++||++++++|++++++++...|..|+++|.+++.|+++++|++|+|++  +||||.+|++.+|+         . |+
T Consensus         2 ~K~~lR~~~~~~r~~l~~~~~~~~s~~i~~~l~~~~~~~~a~~I~~y~~~~--~Evdt~~li~~~~~---------~-k~   69 (194)
T 1sou_A            2 LKSELRKKVLHKRINLSEEERRRLSEKVISNLKSLPEFKKSKKVALYCPIK--GEVDLTPLFPEVLK---------E-KE   69 (194)
T ss_dssp             CHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHCHHHHHCCEEEECCCCS--SCCCCGGGHHHHHH---------H-SE
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhChhhhcCCEEEEECCCC--CCCCHHHHHHHHHH---------c-CC
Confidence            489999999999999999999999999999999999999999999999998  79999999999999         8 99


Q ss_pred             EEEeeeeCCCCceEEEEeCCCCCcccCcCccCCCCCCCCCCCccccccCCCCCccEEEEccceecCCCCccccCCC
Q 030395          103 LYVPRVEDKNSHMRMFHISSIDDLIANSMNILEPAPVDADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGG  178 (178)
Q Consensus       103 v~lP~v~~~~~~m~f~~~~~~~~l~~g~~GI~EP~~~~~~~~~~~~~~~~~~~iDlvlVP~lAFD~~G~RLG~GgG  178 (178)
                      |+||+| . ++.|.|+.|++.++|.+|.|||+||.. ..       . ..+..+|+|||||||||++|+|||||||
T Consensus        70 v~lP~~-~-~~~m~f~~~~~~~~L~~g~~GI~EP~~-~~-------~-~~~~~iDlvlvP~vafD~~G~RLG~GgG  134 (194)
T 1sou_A           70 LILPKV-E-GNEISLYRVHSPACLGVGAFGIMEPVE-GE-------R-VNPEDVDFIAVPGVAFDLEGYRLGFGKG  134 (194)
T ss_dssp             EEEEEE-S-SSSEEEEEESSSCCCEECSSSCEECCS-SE-------E-ECGGGCSEEEECCSCBCSSSCBCCSCCS
T ss_pred             EEEEEe-c-CCeeEEEEECCCCccCCCCCCCCCCCc-cc-------c-CCCCCCCEEEECCeEECCCCceeccCCc
Confidence            999999 3 347999999998999999999999973 10       1 1345789999999999999999999999

>1wkc_A HB8 TT1367 protein; structural genomics, riken structural genomics/proteomi initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.124.1.6

Probab=100.00  E-value=5.1e-35  Score=231.20  Aligned_cols=124  Identities=27%  Similarity=0.453  Sum_probs=104.2

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCcCccCCCeEEEEecCCCCCCCChHHHHHHHHhCCCCCCCCCCCcE
Q 030395           23 QKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKLLSQILQIPNADGDTKTRKK  102 (178)
Q Consensus        23 ~K~~LR~~~~~~R~~ls~~~~~~~s~~i~~~l~~~~~~~~a~~I~~Y~~~~~~~Evdt~~li~~~~~~~~~~~~~~~gk~  102 (178)
                      .|++||++++++|++++.++   .|..|+++|.+++.|+++++|++|+|++  +||||.+|++  |+         . |+
T Consensus         2 ~K~~lR~~~~~~r~~l~~~~---~s~~i~~~l~~~~~~~~a~~I~~y~~~~--~Evdt~~li~--~~---------~-k~   64 (184)
T 1wkc_A            2 TKAELRRRARAAWRRLDLKA---LSRAVGAALLPWLRERGFRHILLYHPLP--HELNLLPLME--AY---------P-AR   64 (184)
T ss_dssp             CHHHHHHHHHHHHHTSCHHH---HHHHHHHHHHHHHHHHTCCEEECCCCCT--TCCCCTTHHH--HS---------C-CE
T ss_pred             CHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHhChhhhcCCEEEEECCCC--CCcCHHHHHH--hh---------c-CC
Confidence            38999999999999999987   7889999999999999999999999998  7999999999  77         8 99


Q ss_pred             EEEeeeeCCCCceEEEEeCCCCCcccCcCccCCCCCCCCCCCccccccCCCCCccEEEEccceecCCCCccccCCC
Q 030395          103 LYVPRVEDKNSHMRMFHISSIDDLIANSMNILEPAPVDADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGG  178 (178)
Q Consensus       103 v~lP~v~~~~~~m~f~~~~~~~~l~~g~~GI~EP~~~~~~~~~~~~~~~~~~~iDlvlVP~lAFD~~G~RLG~GgG  178 (178)
                      |+||+|..+  .|.|+.|+   +|.+|.|||+|| ...        . ..+..+|+|||||||||++|+|||||||
T Consensus        65 v~lP~~~~~--~m~f~~~~---~L~~~~~gi~EP-~~~--------~-~~~~~iDlvlvP~vafD~~G~RLG~GgG  125 (184)
T 1wkc_A           65 YYLPKVAGK--GLTVHPFG---PLAPGPFGLLEP-TTP--------P-EDPRVLDLVVVPGLAFDREGYRLGHGQG  125 (184)
T ss_dssp             EEEEEEETT--EEEEEESC---CBC-------CB-CSC--------C-BCGGGCSEEEECCSEEETTSCEECCSSC
T ss_pred             EEEeEEeCC--ceEEEEec---ccCCCCCCCCCC-CCc--------c-CCCCCCCEEEECcEEECCCCCEeeCCcc
Confidence            999998643  79999998   899999999999 321        0 1345789999999999999999999999

>1sbq_A H91_ORF164, 5,10-methenyltetrahydrofolate synthetase homolog; MTHFS, 5- formyltetrahydrofolate cyclo-ligase, structural genomics; 2.20A {Mycoplasma pneumoniae} SCOP: c.124.1.6 PDB: 1u3f_A* 1u3g_A*

Probab=100.00  E-value=1.4e-33  Score=223.90  Aligned_cols=119  Identities=21%  Similarity=0.332  Sum_probs=107.6

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCcCcc-CCCeEEEEecCCCCCCCChHHHHHHHHhCCCCCCCCCCC
Q 030395           22 QQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFK-SSQRLCAYISCSALREVDTSKLLSQILQIPNADGDTKTR  100 (178)
Q Consensus        22 ~~K~~LR~~~~~~R~~ls~~~~~~~s~~i~~~l~~~~~~~-~a~~I~~Y~~~~~~~Evdt~~li~~~~~~~~~~~~~~~g  100 (178)
                      +.|++||++++++|++++++++...|..|+++|.+++.|+ ++++|++|+|++  +||||.+|++.+|+         .|
T Consensus        26 m~K~~LR~~~~~~R~~l~~~~~~~~s~~i~~~L~~~~~~~~~a~~I~~Y~~~~--~Evdt~~li~~~~~---------~g   94 (189)
T 1sbq_A           26 MDKNALRKQILQKRMALSTIEKSHLDQKINQKLVAFLTPKPCIKTIALYEPIK--NEVTFVDFFFEFLK---------IN   94 (189)
T ss_dssp             CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHTTCTTCCEEECCCCCT--TSCCCCHHHHHHHH---------HT
T ss_pred             ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhHHhHhhCCEEEEECCCC--CCCCHHHHHHHHHH---------cC
Confidence            4599999999999999999999999999999999999999 999999999999  79999999999999         89


Q ss_pred             c-EEEEeeeeCCCCceEEEEeCCCCCcccCcCccCCCCCCCCCCCccccccCCCCCccEEEEccceecCCCCccccCCC
Q 030395          101 K-KLYVPRVEDKNSHMRMFHISSIDDLIANSMNILEPAPVDADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGG  178 (178)
Q Consensus       101 k-~v~lP~v~~~~~~m~f~~~~~~~~l~~g~~GI~EP~~~~~~~~~~~~~~~~~~~iDlvlVP~lAFD~~G~RLG~GgG  178 (178)
                      | +|+||+|..+ +.|.|+.|++.            |.              .+..+|+|||||||||++|+|||||||
T Consensus        95 k~~v~lP~~~~~-~~m~f~~~~~~------------~~--------------~~~~iDlvlVP~vAfD~~G~RLG~GgG  146 (189)
T 1sbq_A           95 QIRAVYPKVISD-TEIIFIDQETN------------TF--------------EPNQIDCFLIPLVGFNKDNYRLGFGKG  146 (189)
T ss_dssp             TCEEEEEEECSS-SCEEEECTTCC------------EE--------------CGGGCCEEEEECSEECTTCCEECCSSC
T ss_pred             CCeEEEeEEccC-CceEEEEeCCC------------CC--------------CcccCCEEEECceEECCCCCEeecCCc
Confidence            9 9999999643 46999999754            21              113689999999999999999999999

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	178
d1wkca_	175	c.124.1.6 (A:) Hypothetical protein TTHA1611 {Ther	4e-06
d1sbqa_	164	c.124.1.6 (A:) 5,10-methenyltetrahydrofolate synth	2e-05

>d1wkca_ c.124.1.6 (A:) Hypothetical protein TTHA1611 {Thermus thermophilus [TaxId: 274]} Length = 175

class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: Methenyltetrahydrofolate synthetase
domain: Hypothetical protein TTHA1611
species: Thermus thermophilus [TaxId: 274]

 Score = 42.5 bits (99), Expect = 4e-06
 Identities = 31/155 (20%), Positives = 48/155 (30%), Gaps = 32/155 (20%)

Query: 24  KRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKL 83
           K  LR + R   + +D    S    A+   +L     +  + +  Y              
Sbjct: 3   KAELRRRARAAWRRLDLKALSR---AVGAALLPWLRERGFRHILLYHPL----------- 48

Query: 84  LSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDDLIANSMNILEPAPVDADG 143
                     + +     + Y  R        +   +     L      +LEP     D 
Sbjct: 49  --------PHELNLLPLMEAYPARYYLPKVAGKGLTVHPFGPLAPGPFGLLEPTTPPEDP 100

Query: 144 NEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGG 178
                       +DL ++PGLAFDR G RLG G G
Sbjct: 101 RV----------LDLVVVPGLAFDREGYRLGHGQG 125

>d1sbqa_ c.124.1.6 (A:) 5,10-methenyltetrahydrofolate synthetase homolog MPN348 {Mycoplasma pneumoniae [TaxId: 2104]} Length = 164

class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: Methenyltetrahydrofolate synthetase
domain: 5,10-methenyltetrahydrofolate synthetase homolog MPN348
species: Mycoplasma pneumoniae [TaxId: 2104]

 Score = 40.6 bits (94), Expect = 2e-05
 Identities = 24/156 (15%), Positives = 45/156 (28%), Gaps = 38/156 (24%)

Query: 24  KRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLE-APWFKSSQRLCAYISCSALREVDTSK 82
           K  LR Q+ +   ++    +SH D  I + ++         + +  Y       EV    
Sbjct: 3   KNALRKQILQKRMALSTIEKSHLDQKINQKLVAFLTPKPCIKTIALYEPIK--NEVTFVD 60

Query: 83  LLSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDDLIANSMNILEPAPVDAD 142
              + L         K  +   V      ++ +      +                    
Sbjct: 61  FFFEFL---------KINQIRAVYPKVISDTEIIFIDQETN------------------- 92

Query: 143 GNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGG 178
                        +D FL+P + F++   RLG G G
Sbjct: 93  -------TFEPNQIDCFLIPLVGFNKDNYRLGFGKG 121

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	178
d1soua_	194	Hypothetical protein aq_1731 {Aquifex aeolicus [Ta	100.0
d1wkca_	175	Hypothetical protein TTHA1611 {Thermus thermophilu	100.0
d1sbqa_	164	5,10-methenyltetrahydrofolate synthetase homolog M	99.97

>d1soua_ c.124.1.6 (A:) Hypothetical protein aq_1731 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: Methenyltetrahydrofolate synthetase
domain: Hypothetical protein aq 1731
species: Aquifex aeolicus [TaxId: 63363]

Probab=100.00  E-value=4.3e-38  Score=248.60  Aligned_cols=133  Identities=29%  Similarity=0.472  Sum_probs=121.3

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCcCccCCCeEEEEecCCCCCCCChHHHHHHHHhCCCCCCCCCCCcE
Q 030395           23 QKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKLLSQILQIPNADGDTKTRKK  102 (178)
Q Consensus        23 ~K~~LR~~~~~~R~~ls~~~~~~~s~~i~~~l~~~~~~~~a~~I~~Y~~~~~~~Evdt~~li~~~~~~~~~~~~~~~gk~  102 (178)
                      .|++||++++++|++|+.+++...|..|+++|.+++.++++++|++|+|++  +||||.+|++.+++          +++
T Consensus         2 ~K~~lRk~~~~~R~~ls~~~~~~~s~~i~~~l~~~~~~~~~~~I~~Y~p~~--~Evdt~~li~~l~~----------~k~   69 (194)
T d1soua_           2 LKSELRKKVLHKRINLSEEERRRLSEKVISNLKSLPEFKKSKKVALYCPIK--GEVDLTPLFPEVLK----------EKE   69 (194)
T ss_dssp             CHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHCHHHHHCCEEEECCCCS--SCCCCGGGHHHHHH----------HSE
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhHHhhcCCEEEEEeccc--ccCChHHHHHHHhh----------ccc
Confidence            489999999999999999999999999999999999999999999999998  79999999999986          468


Q ss_pred             EEEeeeeCCCCceEEEEeCCCCCcccCcCccCCCCCCCCCCCccccccCCCCCccEEEEccceecCCCCccccCCC
Q 030395          103 LYVPRVEDKNSHMRMFHISSIDDLIANSMNILEPAPVDADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGG  178 (178)
Q Consensus       103 v~lP~v~~~~~~m~f~~~~~~~~l~~g~~GI~EP~~~~~~~~~~~~~~~~~~~iDlvlVP~lAFD~~G~RLG~GgG  178 (178)
                      |+||+|.++  .|.|+.|.+.++|..|.|||+||....         .+.+..+|+|||||||||++|+|||||||
T Consensus        70 v~lP~i~~~--~m~~~~~~~~~~l~~~~~gI~EP~~~~---------~~~~~~iDlilVP~lafD~~G~RlG~G~G  134 (194)
T d1soua_          70 LILPKVEGN--EISLYRVHSPACLGVGAFGIMEPVEGE---------RVNPEDVDFIAVPGVAFDLEGYRLGFGKG  134 (194)
T ss_dssp             EEEEEESSS--SEEEEEESSSCCCEECSSSCEECCSSE---------EECGGGCSEEEECCSCBCSSSCBCCSCCS
T ss_pred             ccccccchh--ceeeeccCCCcccccccccccCCCccc---------cccccccceehhhHHHHhhcCCccccCCE
Confidence            999999754  699999999899999999999997421         13456799999999999999999999999

>d1wkca_ c.124.1.6 (A:) Hypothetical protein TTHA1611 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: Methenyltetrahydrofolate synthetase
domain: Hypothetical protein TTHA1611
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=9.1e-35  Score=225.89  Aligned_cols=124  Identities=27%  Similarity=0.455  Sum_probs=101.1

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCcCccCCCeEEEEecCCCCCCCChHHHHHHHHhCCCCCCCCCCCcE
Q 030395           23 QKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKLLSQILQIPNADGDTKTRKK  102 (178)
Q Consensus        23 ~K~~LR~~~~~~R~~ls~~~~~~~s~~i~~~l~~~~~~~~a~~I~~Y~~~~~~~Evdt~~li~~~~~~~~~~~~~~~gk~  102 (178)
                      .|++||++++++|++++.+   +.|+.|+++|+++..++.+++|++|+|++  +||||.+|++.            .|++
T Consensus         2 ~K~~lRk~~r~~r~~l~~~---~~s~~i~~~l~~~~~~~~~~~I~~Y~p~~--~Evdt~~li~~------------~~k~   64 (175)
T d1wkca_           2 TKAELRRRARAAWRRLDLK---ALSRAVGAALLPWLRERGFRHILLYHPLP--HELNLLPLMEA------------YPAR   64 (175)
T ss_dssp             CHHHHHHHHHHHHHTSCHH---HHHHHHHHHHHHHHHHHTCCEEECCCCCT--TCCCCTTHHHH------------SCCE
T ss_pred             CHHHHHHHHHHHHhcCCHH---HHHHHHHHHHHHHHHhcCCCEEEEEEeEC--CccCcchhhhc------------ccce
Confidence            5999999999999999865   45788999999988889999999999998  79999999864            5789


Q ss_pred             EEEeeeeCCCCceEEEEeCCCCCcccCcCccCCCCCCCCCCCccccccCCCCCccEEEEccceecCCCCccccCCC
Q 030395          103 LYVPRVEDKNSHMRMFHISSIDDLIANSMNILEPAPVDADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGG  178 (178)
Q Consensus       103 v~lP~v~~~~~~m~f~~~~~~~~l~~g~~GI~EP~~~~~~~~~~~~~~~~~~~iDlvlVP~lAFD~~G~RLG~GgG  178 (178)
                      |+||+|.++  .|.|+.|   ++|++|.|||+||....          .....+|+|||||||||++|+|||||||
T Consensus        65 v~lP~i~~~--~l~~~~~---~~l~~~~~gI~EP~~~~----------~~~~~~DliivP~vafD~~G~RlG~G~G  125 (175)
T d1wkca_          65 YYLPKVAGK--GLTVHPF---GPLAPGPFGLLEPTTPP----------EDPRVLDLVVVPGLAFDREGYRLGHGQG  125 (175)
T ss_dssp             EEEEEEETT--EEEEEES---CCBC-------CBCSCC----------BCGGGCSEEEECCSEEETTSCEECCSSC
T ss_pred             eeeeccccc--ceeecch---hhcchhhhhcccccccc----------cccccccEEEeeehheeecCcccccCcc
Confidence            999999854  5888877   46999999999997531          1335789999999999999999999999

>d1sbqa_ c.124.1.6 (A:) 5,10-methenyltetrahydrofolate synthetase homolog MPN348 {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: Methenyltetrahydrofolate synthetase
domain: 5,10-methenyltetrahydrofolate synthetase homolog MPN348
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=99.97  E-value=4.4e-32  Score=208.51  Aligned_cols=119  Identities=24%  Similarity=0.396  Sum_probs=101.8

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCcCcc-CCCeEEEEecCCCCCCCChHHHHHHHHhCCCCCCCCCCCc
Q 030395           23 QKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFK-SSQRLCAYISCSALREVDTSKLLSQILQIPNADGDTKTRK  101 (178)
Q Consensus        23 ~K~~LR~~~~~~R~~ls~~~~~~~s~~i~~~l~~~~~~~-~a~~I~~Y~~~~~~~Evdt~~li~~~~~~~~~~~~~~~gk  101 (178)
                      .|++||++++++|++++++++...|..|+++|.++..+. .+++|++|+|++  +||||.+++..++..        .++
T Consensus         2 ~K~~lR~~~~~~R~~l~~~~~~~~s~~i~~~l~~~~~~~~~~~~I~~Y~p~~--~Evd~~~l~~~~l~~--------~~~   71 (164)
T d1sbqa_           2 DKNALRKQILQKRMALSTIEKSHLDQKINQKLVAFLTPKPCIKTIALYEPIK--NEVTFVDFFFEFLKI--------NQI   71 (164)
T ss_dssp             CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHTTCTTCCEEECCCCCT--TSCCCCHHHHHHHHH--------TTC
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhhhhhhcCEEEEEeccC--CcccchHHHHHHHHc--------CCe
Confidence            599999999999999999999999999999998765554 458999999998  799999999887761        345


Q ss_pred             EEEEeeeeCCCCceEEEEeCCCCCcccCcCccCCCCCCCCCCCccccccCCCCCccEEEEccceecCCCCccccCCC
Q 030395          102 KLYVPRVEDKNSHMRMFHISSIDDLIANSMNILEPAPVDADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGG  178 (178)
Q Consensus       102 ~v~lP~v~~~~~~m~f~~~~~~~~l~~g~~GI~EP~~~~~~~~~~~~~~~~~~~iDlvlVP~lAFD~~G~RLG~GgG  178 (178)
                      ++++|++..+ ..|.|+.+         .+|+.||.                 .+|+|||||||||++|+|||||||
T Consensus        72 ~~~~P~i~~~-~~~~~~~~---------~~~~~eP~-----------------~iDliivP~lafD~~G~RLGyGgG  121 (164)
T d1sbqa_          72 RAVYPKVISD-TEIIFIDQ---------ETNTFEPN-----------------QIDCFLIPLVGFNKDNYRLGFGKG  121 (164)
T ss_dssp             EEEEEEECSS-SCEEEECT---------TCCEECGG-----------------GCCEEEEECSEECTTCCEECCSSC
T ss_pred             EEEEeeccCc-ccceeccc---------cccccCCc-----------------ccCEEEeeeheeeeecCccccccC
Confidence            8999999865 36777653         46788873                 479999999999999999999999