Citrus Sinensis ID: 030478

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170------
Protein Sequence
MEKMNHAFEKMKMLVGMDVEDEESAVENDSNSFAFIDDFNRQCTLTTKQRLYGFAICFSVGIFCTLLSLLVFFNPIKFGITFTFGNLLSLGSTAFLIGPKRQVTMMLDPARIYATAIYIASMIIALFSALYVHNKLLTLLALILEFGALIWYSLSYIPFARSMVSKIMLACFDTEF
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHccccccccHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHcccccccccccHcccccccccHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHEEEEEHHHHHHHHHHHHHHHcHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
MEKMNHAFEKMKMLVgmdvedeesavendsnsfafiddfnrqctlttkqRLYGFAICFSVGIFCTLLSLlvffnpikfgitftfgnllslgstafligpkrqvtmmldpARIYATAIYIASMIIALFSALYVHNKLLTLLALILEFGALIWYSLSYIPFARSMVSKIMLACFDTEF
Flexible Loop (DISEMBL)
MEKMNHAFEKMKMLVGMDVEDEESAVENDSNSFAFIDDFNRQCTLTTKQRLYGFAICFSVGIFCTLLSLLVFFNPIKFGITFTFGNLLSLGSTAFLIGPKRQVTMMLDPARIYATAIYIASMIIALFSALYVHNKLLTLLALILEFGALIWYSLSYIPFARSMVSKIMLACFDTEF
Low Complexity Region (SEG)
MEKMNHAFEKMKMLVGMDVEDEESAVENDSNSFAFIDDFNRQCTLTTKQRLYGFAICFSVGIFCTLLSLLVFFNPIKFGITFTFGNLLSLGSTAFLIGPKRQVTMMLDPARIYATAIYIASMIIALFSALYVHNKLLTLLALILEFGALIWYSLSYIPFARSMVSKIMLACFDTEF
Disordered region (IsUnstruct)
*******************************SFAFIDDFNRQCTLTTKQRLYGFAICFSVGIFCTLLSLLVFFNPIKFGITFTFGNLLSLGSTAFLIGPKRQVTMMLDPARIYATAIYIASMIIALFSALYVHNKLLTLLALILEFGALIWYSLSYIPFARSMVSKIMLACFD***
Disordered Region (DISOPRED)
****************************************RQCTLTTKQRLYGFAICFSVGIFCTLLSLLVFFNPIKFGITFTFGNLLSLGSTAFLIGPKRQVTMMLDPARIYATAIYIASMIIALFSALYVHNKLLTLLALILEFGALIWYSLSYIPFARSMVSKIMLACFDTEF
Disordered Region (DISEMBL)
MEKMNHAFEKMKMLVGMDVEDEESAVENDSNSFAFIDDFNRQCTLTTKQRLYGFAICFSVGIFCTLLSLLVFFNPIKFGITFTFGNLLSLGSTAFLIGPKRQVTMMLDPARIYATAIYIASMIIALFSALYVHNKLLTLLALILEFGALIWYSLSYIPFARSMVSKIMLACFDTEF
Disordered Region (DISPRO)
*********************************AFIDDFNRQCTLTTKQRLYGFAICFSVGIFCTLLSLLVFFNPIKFGITFTFGNLLSLGSTAFLIGPKRQVTMMLDPARIYATAIYIASMIIALFSALYVHNKLLTLLALILEFGALIWYSLSYIPFARSMVSKIMLACFDT*F
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEKMNHAFEKMKMLVGMDVEDEESAVENDSNSFAFIDDFNRQCTLTTKQRLYGFAICFSVGIFCTLLSLLVFFNPIKFGITFTFGNLLSLGSTAFLIGPKRQVTMMLDPARIYATAIYIASMIIALFSALYVHNKLLTLLALILEFGALIWYSLSYIPFARSMVSKIMLACFDTEF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	176	2.2.26 [Sep-21-2011]
O95562	160	Vesicle transport protein	yes	no	0.846	0.931	0.396	6e-26
Q8VD57	159	Vesicle transport protein	yes	no	0.846	0.937	0.381	3e-23
Q8WV19	159	Vesicle transport protein	no	no	0.840	0.930	0.376	2e-20
Q5U3Y5	159	Vesicle transport protein	yes	no	0.840	0.930	0.382	5e-20
Q5SSN7	159	Vesicle transport protein	no	no	0.840	0.930	0.382	2e-19
Q4FZV2	157	Vesicle transport protein	no	no	0.840	0.942	0.388	2e-16
P38166	215	Protein transport protein	yes	no	0.607	0.497	0.3	1e-06

>sp|O95562|SFT2B_HUMAN Vesicle transport protein SFT2B OS=Homo sapiens GN=SFT2D2 PE=1 SV=1

 Score =  116 bits (291), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 65/164 (39%), Positives = 91/164 (55%), Gaps = 15/164 (9%)

Query: 12  KMLVGMDVEDEESAVENDSNSFAFIDDFNRQCTLTTKQRLYGFAICFSVGIFCTLLSLLV 71
           K+L G D ED     E    S           +L+   R+ GF  CF++GI C+LL  ++
Sbjct: 6   KVLSGQDTEDRSGLSEVVEAS-----------SLSWSTRIKGFIACFAIGILCSLLGTVL 54

Query: 72  FFNPIK----FGITFTFGNLLSLGSTAFLIGPKRQVTMMLDPARIYATAIYIASMIIALF 127
            + P K    F + +TFGN+ S+GST FL+GP +Q+  M +P R+ AT + +    + L 
Sbjct: 55  LWVPRKGLHLFAVFYTFGNIASIGSTIFLMGPVKQLKRMFEPTRLIATIMVLLCFALTLC 114

Query: 128 SALYVHNKLLTLLALILEFGALIWYSLSYIPFARSMVSKIMLAC 171
           SA + HNK L L+  IL+  AL WYSLS+IPFAR  V K    C
Sbjct: 115 SAFWWHNKGLALIFCILQSLALTWYSLSFIPFARDAVKKCFAVC 158

May be involved in fusion of retrograde transport vesicles derived from an endocytic compartment with the Golgi complex.
Homo sapiens (taxid: 9606)

>sp|Q8VD57|SFT2B_MOUSE Vesicle transport protein SFT2B OS=Mus musculus GN=Sft2d2 PE=1 SV=1

 Score =  107 bits (268), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 63/165 (38%), Positives = 91/165 (55%), Gaps = 16/165 (9%)

Query: 12  KMLVGMDVEDEESAVENDSNSFAFIDDFNRQCTLTTKQRLYGFAICFSVGIFCTLLSLLV 71
           K+L G D ED     E    S           +L+   R+ GF  CF++GI C++L  L+
Sbjct: 6   KVLSGQDTEDRSGLSEVVEAS-----------SLSWGTRIKGFIACFALGILCSVLGTLL 54

Query: 72  FFNPIK----FGITFTFGNLLSLGSTAFLIGPKRQVTMMLDPARIYATAIYIASMIIALF 127
            + P K    F + +T GN++S+GST FL+GP +Q+  M +P R+ AT + +    + L 
Sbjct: 55  LWVPRKGLGLFAVFYTLGNIMSIGSTVFLMGPLKQLKRMFEPTRLIATILVLLCFALTLC 114

Query: 128 SALYVHNKLLTLLALILEFGALIWYSLSYIPFARSMVSKIMLACF 172
           SA ++ NK L L+  IL+  AL WYSLSYIP+AR  V K    C 
Sbjct: 115 SA-FLWNKGLALIFCILQSLALTWYSLSYIPYARDAVKKCFAVCL 158

May be involved in fusion of retrograde transport vesicles derived from an endocytic compartment with the Golgi complex.

Mus musculus (taxid: 10090)

>sp|Q8WV19|SFT2A_HUMAN Vesicle transport protein SFT2A OS=Homo sapiens GN=SFT2D1 PE=1 SV=1

 Score = 98.2 bits (243), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 64/170 (37%), Positives = 95/170 (55%), Gaps = 22/170 (12%)

Query: 1   MEKMNHAFEKMKMLVGMDVEDEE-SAVENDSNSFAFIDDFNRQCTLTTKQRLYGFAICFS 59
           MEK+       ++L G D E++  +A   D++S +F              RL  FAICF 
Sbjct: 1   MEKLR------RVLSGQDDEEQGLTAQVLDASSLSF------------NTRLKWFAICFV 42

Query: 60  VGIFCTLLSLLVFFNP--IK-FGITFTFGNLLSLGSTAFLIGPKRQVTMMLDPARIYATA 116
            G+F ++L   + + P  IK F + +T GNL +L ST FL+GP +Q+  M +  R+ AT 
Sbjct: 43  CGVFFSILGTGLLWLPGGIKLFAVFYTLGNLAALASTCFLMGPVKQLKKMFEATRLLATI 102

Query: 117 IYIASMIIALFSALYVHNKLLTLLALILEFGALIWYSLSYIPFARSMVSK 166
           + +   I  L +AL+ H K L +L  IL+F ++ WYSLSYIP+AR  V K
Sbjct: 103 VMLLCFIFTLCAALWWHKKGLAVLFCILQFLSMTWYSLSYIPYARDAVIK 152

May be involved in fusion of retrograde transport vesicles derived from an endocytic compartment with the Golgi complex.

Homo sapiens (taxid: 9606)

>sp|Q5U3Y5|SFT2A_RAT Vesicle transport protein SFT2A OS=Rattus norvegicus GN=Sft2d1 PE=2 SV=1

 Score = 97.1 bits (240), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 65/170 (38%), Positives = 94/170 (55%), Gaps = 22/170 (12%)

Query: 1   MEKMNHAFEKMKMLVGMDVEDEE-SAVENDSNSFAFIDDFNRQCTLTTKQRLYGFAICFS 59
           MEK+       ++L G D E++  +A   D++S +F              RL  F ICF 
Sbjct: 1   MEKLR------RVLSGQDDEEQGLTAQVLDASSLSF------------NTRLKWFVICFV 42

Query: 60  VGIFCTLLS--LLVFFNPIK-FGITFTFGNLLSLGSTAFLIGPKRQVTMMLDPARIYATA 116
            GIF ++L   LL   N +K F + +T GNL +L ST FL+GP +Q+  M +  R+ AT 
Sbjct: 43  AGIFFSILGTGLLWLPNGVKLFAVFYTLGNLAALASTCFLMGPVKQLKKMFETTRLLATI 102

Query: 117 IYIASMIIALFSALYVHNKLLTLLALILEFGALIWYSLSYIPFARSMVSK 166
           I +  ++  L +AL+   K L LL  IL+F ++ WYSLSYIP+AR  V K
Sbjct: 103 IMLLCLVFTLCAALWWRKKGLALLFCILQFLSMTWYSLSYIPYARDAVLK 152

May be involved in fusion of retrograde transport vesicles derived from an endocytic compartment with the Golgi complex.

Rattus norvegicus (taxid: 10116)

>sp|Q5SSN7|SFT2A_MOUSE Vesicle transport protein SFT2A OS=Mus musculus GN=Sft2d1 PE=2 SV=1

 Score = 95.5 bits (236), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 65/170 (38%), Positives = 93/170 (54%), Gaps = 22/170 (12%)

Query: 1   MEKMNHAFEKMKMLVGMDVEDEE-SAVENDSNSFAFIDDFNRQCTLTTKQRLYGFAICFS 59
           MEK+       ++L G D E++  +A   D++S +F              RL  F ICF 
Sbjct: 1   MEKLR------RVLSGQDDEEQGLTAQVLDASSLSF------------NTRLKWFVICFV 42

Query: 60  VGIFCTLLS--LLVFFNPIK-FGITFTFGNLLSLGSTAFLIGPKRQVTMMLDPARIYATA 116
            GIF + L   LL   N +K F + +T GNL +L ST FL+GP +Q+  M +  R+ AT 
Sbjct: 43  AGIFFSFLGTGLLWLPNGMKLFAVFYTLGNLAALASTCFLMGPVKQLKKMFETTRLLATI 102

Query: 117 IYIASMIIALFSALYVHNKLLTLLALILEFGALIWYSLSYIPFARSMVSK 166
           I +  ++  L +AL+   K L LL  IL+F ++ WYSLSYIP+AR  V K
Sbjct: 103 IMLLCLVFTLCAALWWRKKGLALLFCILQFLSMTWYSLSYIPYARDAVLK 152

May be involved in fusion of retrograde transport vesicles derived from an endocytic compartment with the Golgi complex.

Mus musculus (taxid: 10090)

>sp|Q4FZV2|SFT2B_RAT Vesicle transport protein SFT2B OS=Rattus norvegicus GN=Sft2d2 PE=2 SV=1

 Score = 85.5 bits (210), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 63/162 (38%), Positives = 92/162 (56%), Gaps = 14/162 (8%)

Query: 12  KMLVGMDVEDEESAVENDSNSFAFIDDFNRQCTLTTKQRLYGFAICFSVGIFCTLLSLLV 71
           K+L G D ED     E   +S           +L+   R+ GF +CF++GI C+LL  L+
Sbjct: 6   KVLSGQDTEDRSGLSEVVESS-----------SLSWSTRIKGFIVCFALGILCSLLGTLL 54

Query: 72  FFNPIK--FGITFTFGNLLSLGSTAFLIGPKRQVTMMLDPARIYATAIYIASMIIALFSA 129
            +   K  F + +T GN+ S+GST FL+GP +Q+  M +P R+ AT + +   ++ L SA
Sbjct: 55  LWVSRKGLFAVFYTLGNITSIGSTMFLMGPLKQLKRMFEPTRLIATILVLLFFVLTLCSA 114

Query: 130 LYVHNKLLTLLALILEFGALIWYSLSYIPFARSMVSKIMLAC 171
            ++ NK L L+  IL+  AL WYSLSYIP+AR  V K    C
Sbjct: 115 -FLWNKGLALIFCILQSLALTWYSLSYIPYARDAVKKCFAVC 155

May be involved in fusion of retrograde transport vesicles derived from an endocytic compartment with the Golgi complex.

Rattus norvegicus (taxid: 10116)

>sp|P38166|SFT2_YEAST Protein transport protein SFT2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SFT2 PE=1 SV=1

 Score = 53.1 bits (126), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 60/110 (54%), Gaps = 3/110 (2%)

Query: 51  LYGFAICFSVGIFCTLLSLLVFFNPIKFGITFTFGNLLSLGSTAFLIGPKRQVTMMLDPA 110
           L G   CF++   CT L  ++   P KFG+ +T G+LL + +   L+GP   +  +    
Sbjct: 88  LLGATACFTL---CTFLFPVLAAKPRKFGLLWTMGSLLFVLAFGVLMGPLAYLKHLTARE 144

Query: 111 RIYATAIYIASMIIALFSALYVHNKLLTLLALILEFGALIWYSLSYIPFA 160
           R+  +  + A+  + ++ A +  N +LT+   +LE  A+I+Y++SY PF 
Sbjct: 145 RLPFSMFFFATCFMTIYFAAFSKNTVLTITCALLELVAVIYYAISYFPFG 194

Nonessential protein required for the fusion of transport vesicles derived from the endocytic pathway with the Golgi complex. Can be partially replaced by GOT1.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	176
356530975	178	PREDICTED: vesicle transport protein SFT	1.0	0.988	0.831	1e-81
224077666	177	predicted protein [Populus trichocarpa]	1.0	0.994	0.824	3e-81
356559957	178	PREDICTED: vesicle transport protein SFT	1.0	0.988	0.820	1e-80
388517261	178	unknown [Medicago truncatula]	0.994	0.983	0.815	7e-80
388505278	178	unknown [Lotus japonicus]	0.994	0.983	0.798	5e-79
225463197	177	PREDICTED: vesicle transport protein SFT	1.0	0.994	0.796	1e-78
15237787	175	Got1/Sft2-like vescicle transport protei	0.994	1.0	0.767	2e-75
255553953	174	Vesicle transport protein SFT2B, putativ	0.988	1.0	0.818	2e-73
449459204	179	PREDICTED: vesicle transport protein SFT	1.0	0.983	0.787	3e-73
297812505	175	hypothetical protein ARALYDRAFT_489217 [	0.994	1.0	0.772	4e-71

>gi|356530975|ref|XP_003534054.1| PREDICTED: vesicle transport protein SFT2B-like isoform 1 [Glycine max]

 Score =  307 bits (786), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 148/178 (83%), Positives = 164/178 (92%), Gaps = 2/178 (1%)

Query: 1   MEKMNHAFEKMKMLVGMDVEDEE--SAVENDSNSFAFIDDFNRQCTLTTKQRLYGFAICF 58
           MEKMN AFEK+K++VGMDVEDEE  +A  ++SNSFAF+DDFNR CTL+T QRLYGFAICF
Sbjct: 1   MEKMNKAFEKVKIMVGMDVEDEEQQAAALDNSNSFAFMDDFNRNCTLSTTQRLYGFAICF 60

Query: 59  SVGIFCTLLSLLVFFNPIKFGITFTFGNLLSLGSTAFLIGPKRQVTMMLDPARIYATAIY 118
           + G+ CTLLS+LVFF PIKF I FT GNLLSLGSTAFLIGPKRQVTMMLDPARIYATAIY
Sbjct: 61  ASGLTCTLLSMLVFFKPIKFAIAFTLGNLLSLGSTAFLIGPKRQVTMMLDPARIYATAIY 120

Query: 119 IASMIIALFSALYVHNKLLTLLALILEFGALIWYSLSYIPFARSMVSKIMLACFDTEF 176
           IASMIIALF ALYVHNKLLTLLA+ILEFGAL+WYSLSYIPFAR+MVSKIM++CFDTEF
Sbjct: 121 IASMIIALFCALYVHNKLLTLLAIILEFGALVWYSLSYIPFARAMVSKIMVSCFDTEF 178

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224077666|ref|XP_002305352.1| predicted protein [Populus trichocarpa] gi|222848316|gb|EEE85863.1| predicted protein [Populus trichocarpa]

 Score =  306 bits (783), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 146/177 (82%), Positives = 162/177 (91%), Gaps = 1/177 (0%)

Query: 1   MEKMNHAFEKMKMLVGMDVEDEESAVEN-DSNSFAFIDDFNRQCTLTTKQRLYGFAICFS 59
           M+KMN AFEK+KMLVGM+VEDEE  V   +S+SF F+DDFNR CTL+TKQR YGFAICFS
Sbjct: 1   MQKMNQAFEKVKMLVGMEVEDEEEGVATVESSSFTFMDDFNRDCTLSTKQRFYGFAICFS 60

Query: 60  VGIFCTLLSLLVFFNPIKFGITFTFGNLLSLGSTAFLIGPKRQVTMMLDPARIYATAIYI 119
            G+ C LLS+LVFFNP+KFGITFTFGNLLSLGSTAFLIGPKRQV+MMLDP RIYATA+Y+
Sbjct: 61  TGLACVLLSMLVFFNPVKFGITFTFGNLLSLGSTAFLIGPKRQVSMMLDPVRIYATALYL 120

Query: 120 ASMIIALFSALYVHNKLLTLLALILEFGALIWYSLSYIPFARSMVSKIMLACFDTEF 176
           AS+IIAL  ALYVHNKLLTLLA+ILEFGALIWYSLSYIPFAR+MVSKIMLACFDTEF
Sbjct: 121 ASIIIALLCALYVHNKLLTLLAIILEFGALIWYSLSYIPFARAMVSKIMLACFDTEF 177

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356559957|ref|XP_003548262.1| PREDICTED: vesicle transport protein SFT2B [Glycine max] gi|255629641|gb|ACU15168.1| unknown [Glycine max]

 Score =  303 bits (777), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 146/178 (82%), Positives = 160/178 (89%), Gaps = 2/178 (1%)

Query: 1   MEKMNHAFEKMKMLVGMDVEDE--ESAVENDSNSFAFIDDFNRQCTLTTKQRLYGFAICF 58
           MEKMN AFEK+K++VGMD EDE  ++A  N SNSFAF+DDFNR CTL+T QRLYGFAICF
Sbjct: 1   MEKMNKAFEKVKIMVGMDAEDEDQQAAALNSSNSFAFMDDFNRNCTLSTTQRLYGFAICF 60

Query: 59  SVGIFCTLLSLLVFFNPIKFGITFTFGNLLSLGSTAFLIGPKRQVTMMLDPARIYATAIY 118
           + G+ CTLLS+LVFF PIKF I FT GNLLSLGSTAFLIGPKRQVTMMLDP RIYATAIY
Sbjct: 61  AAGLTCTLLSMLVFFKPIKFAIAFTLGNLLSLGSTAFLIGPKRQVTMMLDPVRIYATAIY 120

Query: 119 IASMIIALFSALYVHNKLLTLLALILEFGALIWYSLSYIPFARSMVSKIMLACFDTEF 176
           IASMIIALF ALYVHNKLLT LA+ILEFGAL+WYSLSYIPFARSMVSKIM++CFDTEF
Sbjct: 121 IASMIIALFCALYVHNKLLTFLAIILEFGALVWYSLSYIPFARSMVSKIMVSCFDTEF 178

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388517261|gb|AFK46692.1| unknown [Medicago truncatula]

 Score =  301 bits (771), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 146/179 (81%), Positives = 163/179 (91%), Gaps = 4/179 (2%)

Query: 1   MEKMNHAFEKMKMLVGMDVEDEES---AVENDSNSFAFIDDFNRQCTLTTKQRLYGFAIC 57
           MEKMN AFEK+K++VGM+VEDEE+   A+EN+S SFAF+DDFNR CTL+  QRLYGFAIC
Sbjct: 1   MEKMNKAFEKVKIMVGMEVEDEEAQAAALENES-SFAFMDDFNRNCTLSRTQRLYGFAIC 59

Query: 58  FSVGIFCTLLSLLVFFNPIKFGITFTFGNLLSLGSTAFLIGPKRQVTMMLDPARIYATAI 117
           F+ G+ CTLLS+LVF  PIKFGITFT GNLLSLGSTAFLIGPKRQV+MMLDP RIYATAI
Sbjct: 60  FAAGVTCTLLSMLVFLKPIKFGITFTLGNLLSLGSTAFLIGPKRQVSMMLDPVRIYATAI 119

Query: 118 YIASMIIALFSALYVHNKLLTLLALILEFGALIWYSLSYIPFARSMVSKIMLACFDTEF 176
           YIASMIIALF ALYVHNKLLT LA+ILEFGAL+WYSLSYIPFARSMVSKIM++CFDTEF
Sbjct: 120 YIASMIIALFCALYVHNKLLTFLAIILEFGALVWYSLSYIPFARSMVSKIMVSCFDTEF 178

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388505278|gb|AFK40705.1| unknown [Lotus japonicus]

 Score =  298 bits (763), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 143/179 (79%), Positives = 164/179 (91%), Gaps = 4/179 (2%)

Query: 1   MEKMNHAFEKMKMLVGMDVEDEE---SAVENDSNSFAFIDDFNRQCTLTTKQRLYGFAIC 57
           MEKM+ AFEK+K++VGM+VEDEE   +A++ND NSFAF+D+FNR CTL+TKQRLYGFAIC
Sbjct: 1   MEKMSKAFEKVKIMVGMEVEDEEQQAAALDND-NSFAFMDEFNRNCTLSTKQRLYGFAIC 59

Query: 58  FSVGIFCTLLSLLVFFNPIKFGITFTFGNLLSLGSTAFLIGPKRQVTMMLDPARIYATAI 117
           F+ G+ CTLLS+LVF  PIKF I FT GNLLSLGSTAFLIGPK+Q++MMLDP RIYATAI
Sbjct: 60  FAAGLTCTLLSMLVFLKPIKFAIAFTLGNLLSLGSTAFLIGPKKQISMMLDPVRIYATAI 119

Query: 118 YIASMIIALFSALYVHNKLLTLLALILEFGALIWYSLSYIPFARSMVSKIMLACFDTEF 176
           YIASMIIALF ALYVHNKLLTLLA+ILEFGAL+WYSLSYIPFARSMVSKIM++CFDTEF
Sbjct: 120 YIASMIIALFCALYVHNKLLTLLAIILEFGALVWYSLSYIPFARSMVSKIMVSCFDTEF 178

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225463197|ref|XP_002270756.1| PREDICTED: vesicle transport protein SFT2B [Vitis vinifera] gi|296084822|emb|CBI27704.3| unnamed protein product [Vitis vinifera]

 Score =  297 bits (760), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 141/177 (79%), Positives = 162/177 (91%), Gaps = 1/177 (0%)

Query: 1   MEKMNHAFEKMKMLVGMDVEDEES-AVENDSNSFAFIDDFNRQCTLTTKQRLYGFAICFS 59
           MEKMNHAFE++K+LVGM+V+D+++ A   D   F+F+DDFNR CTL+TKQR YGFAIC +
Sbjct: 1   MEKMNHAFERVKILVGMEVDDDQNVAAPPDDGPFSFMDDFNRDCTLSTKQRFYGFAICLA 60

Query: 60  VGIFCTLLSLLVFFNPIKFGITFTFGNLLSLGSTAFLIGPKRQVTMMLDPARIYATAIYI 119
            G+ CTLLS+LVFFNPIKFGITFTFGNLL+LGSTAFLIGPKRQVTMMLDP RIYATAIY+
Sbjct: 61  AGLTCTLLSMLVFFNPIKFGITFTFGNLLALGSTAFLIGPKRQVTMMLDPVRIYATAIYL 120

Query: 120 ASMIIALFSALYVHNKLLTLLALILEFGALIWYSLSYIPFARSMVSKIMLACFDTEF 176
           AS+IIALF ALYV NKLLTLLA++LEFGALIWYSLSYIPFARSMVSKIM++CFDTEF
Sbjct: 121 ASIIIALFCALYVRNKLLTLLAIMLEFGALIWYSLSYIPFARSMVSKIMVSCFDTEF 177

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15237787|ref|NP_197746.1| Got1/Sft2-like vescicle transport protein [Arabidopsis thaliana] gi|8809704|dbj|BAA97245.1| unnamed protein product [Arabidopsis thaliana] gi|26450165|dbj|BAC42201.1| unknown protein [Arabidopsis thaliana] gi|28827714|gb|AAO50701.1| unknown protein [Arabidopsis thaliana] gi|332005800|gb|AED93183.1| Got1/Sft2-like vescicle transport protein [Arabidopsis thaliana]

 Score =  286 bits (732), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 135/176 (76%), Positives = 155/176 (88%), Gaps = 1/176 (0%)

Query: 1   MEKMNHAFEKMKMLVGMDVEDEESAVENDSNSFAFIDDFNRQCTLTTKQRLYGFAICFSV 60
           M+KMN A EKMKMLVGM+VEDE+ A + +S S +F++D NR C LTTKQR YGFAIC S 
Sbjct: 1   MDKMNQAIEKMKMLVGMEVEDEQQAADEES-SLSFMEDLNRNCALTTKQRFYGFAICLSA 59

Query: 61  GIFCTLLSLLVFFNPIKFGITFTFGNLLSLGSTAFLIGPKRQVTMMLDPARIYATAIYIA 120
           G+ CTLLS+LVFFNP+KFGITFT GNL++LGSTAFLIGP+RQVTMMLDPARIYATA+Y+A
Sbjct: 60  GLTCTLLSMLVFFNPVKFGITFTLGNLMALGSTAFLIGPQRQVTMMLDPARIYATALYLA 119

Query: 121 SMIIALFSALYVHNKLLTLLALILEFGALIWYSLSYIPFARSMVSKIMLACFDTEF 176
           S+IIALF ALYV NKLLTLLA+ILEF  LIWYSLSYIPFAR+MVSKI + CFDTEF
Sbjct: 120 SIIIALFCALYVRNKLLTLLAIILEFTGLIWYSLSYIPFARTMVSKIFMTCFDTEF 175

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255553953|ref|XP_002518017.1| Vesicle transport protein SFT2B, putative [Ricinus communis] gi|223542999|gb|EEF44535.1| Vesicle transport protein SFT2B, putative [Ricinus communis]

 Score =  280 bits (715), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 144/176 (81%), Positives = 160/176 (90%), Gaps = 2/176 (1%)

Query: 1   MEKMNHAFEKMKMLVGMDVEDEESAVENDSNSFAFIDDFNRQCTLTTKQRLYGFAICFSV 60
           MEKM  A EKMKMLVG++VEDEE A   +S SF  +DDFNR CTL+TKQRLYGFAICF  
Sbjct: 1   MEKMKEAMEKMKMLVGLEVEDEEPAAAEESASF--LDDFNRNCTLSTKQRLYGFAICFFS 58

Query: 61  GIFCTLLSLLVFFNPIKFGITFTFGNLLSLGSTAFLIGPKRQVTMMLDPARIYATAIYIA 120
           G+ CTLLS+LVFFNP+KFGITFTFGNLLSLGSTAFLIGPKRQVTMMLDP RIYATA+++A
Sbjct: 59  GLACTLLSMLVFFNPVKFGITFTFGNLLSLGSTAFLIGPKRQVTMMLDPVRIYATALFLA 118

Query: 121 SMIIALFSALYVHNKLLTLLALILEFGALIWYSLSYIPFARSMVSKIMLACFDTEF 176
           S+IIALF ALYVHNKLLTLLA++LEFGAL+WYSLSYIPFARSMVSK+MLACFDTEF
Sbjct: 119 SIIIALFCALYVHNKLLTLLAIVLEFGALVWYSLSYIPFARSMVSKVMLACFDTEF 174

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449459204|ref|XP_004147336.1| PREDICTED: vesicle transport protein SFT2B-like [Cucumis sativus] gi|449508719|ref|XP_004163391.1| PREDICTED: vesicle transport protein SFT2B-like [Cucumis sativus]

 Score =  279 bits (713), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 141/179 (78%), Positives = 158/179 (88%), Gaps = 3/179 (1%)

Query: 1   MEKMNHAFEKMKMLVGMDVEDEE---SAVENDSNSFAFIDDFNRQCTLTTKQRLYGFAIC 57
           MEKMN AFEKMKMLVG++V+DE    +A  +D +S  F+DDFNR CTL+TKQR YGFAIC
Sbjct: 1   MEKMNQAFEKMKMLVGVEVDDEREASTATIDDGSSSWFMDDFNRNCTLSTKQRFYGFAIC 60

Query: 58  FSVGIFCTLLSLLVFFNPIKFGITFTFGNLLSLGSTAFLIGPKRQVTMMLDPARIYATAI 117
           F  G+ CTL+S+LVFFNPIKFGI FT GN+LSLGSTAFLIGPKRQVTMMLDP RIYATAI
Sbjct: 61  FVAGVTCTLMSMLVFFNPIKFGIAFTLGNMLSLGSTAFLIGPKRQVTMMLDPVRIYATAI 120

Query: 118 YIASMIIALFSALYVHNKLLTLLALILEFGALIWYSLSYIPFARSMVSKIMLACFDTEF 176
           Y+ASMI ALF ALYVHNKLLTLL+LILEFGALIWYSLSYIPFARSMVSK+M++C DTEF
Sbjct: 121 YLASMIFALFGALYVHNKLLTLLSLILEFGALIWYSLSYIPFARSMVSKVMVSCLDTEF 179

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297812505|ref|XP_002874136.1| hypothetical protein ARALYDRAFT_489217 [Arabidopsis lyrata subsp. lyrata] gi|297319973|gb|EFH50395.1| hypothetical protein ARALYDRAFT_489217 [Arabidopsis lyrata subsp. lyrata]

 Score =  272 bits (696), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 136/176 (77%), Positives = 156/176 (88%), Gaps = 1/176 (0%)

Query: 1   MEKMNHAFEKMKMLVGMDVEDEESAVENDSNSFAFIDDFNRQCTLTTKQRLYGFAICFSV 60
           M+KMN AFEKMKMLVGM+VEDE+ A E + NS +F++D NR C LTTKQR YGFAIC S 
Sbjct: 1   MDKMNQAFEKMKMLVGMEVEDEQQAAE-EENSLSFMEDLNRNCALTTKQRFYGFAICLSA 59

Query: 61  GIFCTLLSLLVFFNPIKFGITFTFGNLLSLGSTAFLIGPKRQVTMMLDPARIYATAIYIA 120
           G+ CTLLS+LVFFNP+KFGITFT GNL++LGSTAFLIGP+RQVTMMLDPARIYATA+Y+A
Sbjct: 60  GLTCTLLSMLVFFNPVKFGITFTLGNLMALGSTAFLIGPQRQVTMMLDPARIYATALYLA 119

Query: 121 SMIIALFSALYVHNKLLTLLALILEFGALIWYSLSYIPFARSMVSKIMLACFDTEF 176
           S+IIALF ALYV NKLLTLLA+ILEF  LIWYSLSYIPFAR+MVS+I + CFDTEF
Sbjct: 120 SIIIALFCALYVRNKLLTLLAIILEFTGLIWYSLSYIPFARTMVSRIFMTCFDTEF 175

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	176
TAIR|locus:2171706	175	AT5G23550 "AT5G23550" [Arabido	0.994	1.0	0.767	3.3e-70
TAIR|locus:2151837	163	AT5G24170 "AT5G24170" [Arabido	0.846	0.914	0.526	1.8e-39
UNIPROTKB|F6RF48	160	SFT2D2 "Uncharacterized protei	0.812	0.893	0.421	4e-26
UNIPROTKB|O95562	160	SFT2D2 "Vesicle transport prot	0.727	0.8	0.431	4.6e-25
UNIPROTKB|F1PKN6	140	SFT2D2 "Uncharacterized protei	0.727	0.914	0.424	6.8e-24
RGD|1310623	157	Sft2d2 "SFT2 domain containing	0.840	0.942	0.388	6.8e-24
DICTYBASE|DDB_G0291055	158	DDB_G0291055 "SFT2 family prot	0.710	0.791	0.368	2.3e-23
MGI|MGI:1917362	159	Sft2d2 "SFT2 domain containing	0.721	0.798	0.416	3.8e-23
UNIPROTKB|F1RPV2	159	SFT2D2 "Uncharacterized protei	0.721	0.798	0.416	4.8e-23
ZFIN|ZDB-GENE-040426-1350	161	sft2d1 "SFT2 domain containing	0.727	0.795	0.401	1e-22

TAIR|locus:2171706 AT5G23550 "AT5G23550" [Arabidopsis thaliana (taxid:3702)]

 Score = 711 (255.3 bits), Expect = 3.3e-70, P = 3.3e-70
 Identities = 135/176 (76%), Positives = 155/176 (88%)

Query:     1 MEKMNHAFEKMKMLVGMDVEDEESAVENDSNSFAFIDDFNRQCTLTTKQRLYGFAICFSV 60
             M+KMN A EKMKMLVGM+VEDE+ A + +S S +F++D NR C LTTKQR YGFAIC S 
Sbjct:     1 MDKMNQAIEKMKMLVGMEVEDEQQAADEES-SLSFMEDLNRNCALTTKQRFYGFAICLSA 59

Query:    61 GIFCTLLSLLVFFNPIKFGITFTFGNLLSLGSTAFLIGPKRQVTMMLDPARIYATAIYIA 120
             G+ CTLLS+LVFFNP+KFGITFT GNL++LGSTAFLIGP+RQVTMMLDPARIYATA+Y+A
Sbjct:    60 GLTCTLLSMLVFFNPVKFGITFTLGNLMALGSTAFLIGPQRQVTMMLDPARIYATALYLA 119

Query:   121 SMIIALFSALYVHNKLLTLLALILEFGALIWYSLSYIPFARSMVSKIMLACFDTEF 176
             S+IIALF ALYV NKLLTLLA+ILEF  LIWYSLSYIPFAR+MVSKI + CFDTEF
Sbjct:   120 SIIIALFCALYVRNKLLTLLAIILEFTGLIWYSLSYIPFARTMVSKIFMTCFDTEF 175

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA

GO:0006661 "phosphatidylinositol biosynthetic process" evidence=RCA

GO:0009086 "methionine biosynthetic process" evidence=RCA

TAIR|locus:2151837 AT5G24170 "AT5G24170" [Arabidopsis thaliana (taxid:3702)]

 Score = 421 (153.3 bits), Expect = 1.8e-39, P = 1.8e-39
 Identities = 79/150 (52%), Positives = 112/150 (74%)

Query:    27 ENDSNSFAFIDDFNRQ-CTLTTKQRLYGFAICFSVGIFCTLLSLLVFFNPIKFGITFTFG 85
             + D  + +F++D +   C L+T QR+YGFA   + G+    LS++VF  PIKF + FTFG
Sbjct:    13 DGDGTTDSFLEDGSEGLCALSTTQRMYGFAASLATGLLLMFLSMIVFGIPIKFALLFTFG 72

Query:    86 NLLSLGSTAFLIGPKRQVTMMLDPARIYATAIYIASMIIALFSALYVHNKLLTLLALILE 145
             N+L++GSTAFL+GP++Q++MM DP R  AT+IYI  +++AL  AL +H+K+LT+LA++ E
Sbjct:    73 NVLAIGSTAFLMGPEQQMSMMFDPVRFLATSIYIGCVVVALICALLIHSKILTVLAILCE 132

Query:   146 FGALIWYSLSYIPFARSMVSKIMLACFDTE 175
               ALIWYSLSYIPFAR MVS+IM+   DTE
Sbjct:   133 ICALIWYSLSYIPFARRMVSEIMIRLCDTE 162

GO:0003674 "molecular_function" evidence=ND

GO:0006810 "transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0006661 "phosphatidylinositol biosynthetic process" evidence=RCA

UNIPROTKB|F6RF48 SFT2D2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 295 (108.9 bits), Expect = 4.0e-26, P = 4.0e-26
 Identities = 62/147 (42%), Positives = 85/147 (57%)

Query:    29 DSNSFAFIDDFNRQCTLTTKQRLYGFAICFSVGIFCTLLSLLVFFNPIK----FGITFTF 84
             DS     + +     +L++  R+ GF  CF+ GI C+LL  L+ + P K    F + +TF
Sbjct:    12 DSEDRGGLSEVVEATSLSSGTRIKGFIACFAAGILCSLLGTLLLWVPRKGLYLFAVFYTF 71

Query:    85 GNLLSLGSTAFLIGPKRQVTMMLDPARIYATAIYIASMIIALFSALYVHNKLLTLLALIL 144
             GN+ SLGST FL+GP  Q+  M +P R+ AT + +    + L SA + HNK L L+  IL
Sbjct:    72 GNIASLGSTVFLMGPMTQLKRMFEPTRLIATVLVLLCFALTLCSAFWWHNKGLALIFCIL 131

Query:   145 EFGALIWYSLSYIPFARSMVSKIMLAC 171
             +  AL WYSLSYIPFAR  V K    C
Sbjct:   132 QSLALTWYSLSYIPFARDAVKKCFTVC 158

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|O95562 SFT2D2 "Vesicle transport protein SFT2B" [Homo sapiens (taxid:9606)]

 Score = 285 (105.4 bits), Expect = 4.6e-25, P = 4.6e-25
 Identities = 57/132 (43%), Positives = 82/132 (62%)

Query:    44 TLTTKQRLYGFAICFSVGIFCTLLSLLVFFNPIK----FGITFTFGNLLSLGSTAFLIGP 99
             +L+   R+ GF  CF++GI C+LL  ++ + P K    F + +TFGN+ S+GST FL+GP
Sbjct:    27 SLSWSTRIKGFIACFAIGILCSLLGTVLLWVPRKGLHLFAVFYTFGNIASIGSTIFLMGP 86

Query:   100 KRQVTMMLDPARIYATAIYIASMIIALFSALYVHNKLLTLLALILEFGALIWYSLSYIPF 159
              +Q+  M +P R+ AT + +    + L SA + HNK L L+  IL+  AL WYSLS+IPF
Sbjct:    87 VKQLKRMFEPTRLIATIMVLLCFALTLCSAFWWHNKGLALIFCILQSLALTWYSLSFIPF 146

Query:   160 ARSMVSKIMLAC 171
             AR  V K    C
Sbjct:   147 ARDAVKKCFAVC 158

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1PKN6 SFT2D2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 274 (101.5 bits), Expect = 6.8e-24, P = 6.8e-24
 Identities = 56/132 (42%), Positives = 80/132 (60%)

Query:    44 TLTTKQRLYGFAICFSVGIFCTLLSLLVFFNPIK----FGITFTFGNLLSLGSTAFLIGP 99
             +L+   R+ GF  CF+ GI C+LL  L+ + P K    F + +TFGN+ S+GST FL+GP
Sbjct:     7 SLSWSTRIKGFIACFAAGIVCSLLGTLLLWVPRKGLYLFAVFYTFGNIASIGSTVFLMGP 66

Query:   100 KRQVTMMLDPARIYATAIYIASMIIALFSALYVHNKLLTLLALILEFGALIWYSLSYIPF 159
              +Q+  M +P R+ AT + +    + L SA + H K L L+  IL+  AL WYSLS+IP+
Sbjct:    67 MKQLKRMFEPTRLIATIMVLLCFALTLCSAFWWHIKGLALIFCILQSLALTWYSLSFIPY 126

Query:   160 ARSMVSKIMLAC 171
             AR  V K    C
Sbjct:   127 ARDAVKKCFAVC 138

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

RGD|1310623 Sft2d2 "SFT2 domain containing 2" [Rattus norvegicus (taxid:10116)]

 Score = 274 (101.5 bits), Expect = 6.8e-24, P = 6.8e-24
 Identities = 63/162 (38%), Positives = 92/162 (56%)

Query:    12 KMLVGMDVEDEESAVENDSNSFAFIDDFNRQCTLTTKQRLYGFAICFSVGIFCTLLSLLV 71
             K+L G D ED     E   +S           +L+   R+ GF +CF++GI C+LL  L+
Sbjct:     6 KVLSGQDTEDRSGLSEVVESS-----------SLSWSTRIKGFIVCFALGILCSLLGTLL 54

Query:    72 FFNPIK--FGITFTFGNLLSLGSTAFLIGPKRQVTMMLDPARIYATAIYIASMIIALFSA 129
              +   K  F + +T GN+ S+GST FL+GP +Q+  M +P R+ AT + +   ++ L SA
Sbjct:    55 LWVSRKGLFAVFYTLGNITSIGSTMFLMGPLKQLKRMFEPTRLIATILVLLFFVLTLCSA 114

Query:   130 LYVHNKLLTLLALILEFGALIWYSLSYIPFARSMVSKIMLAC 171
              ++ NK L L+  IL+  AL WYSLSYIP+AR  V K    C
Sbjct:   115 -FLWNKGLALIFCILQSLALTWYSLSYIPYARDAVKKCFAVC 155

GO:0015031 "protein transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

DICTYBASE|DDB_G0291055 DDB_G0291055 "SFT2 family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 269 (99.8 bits), Expect = 2.3e-23, P = 2.3e-23
 Identities = 46/125 (36%), Positives = 79/125 (63%)

Query:    37 DDFNRQCTLTTKQRLYGFAICFSVGIFCTLLSLLVFFNPIKFGITFTFGNLLSLGSTAFL 96
             DD N QC+LT  QR+ GFA+C ++G+    LSL+ F +P  F + FT G++L + +T F+
Sbjct:    21 DDLNNQCSLTFTQRVIGFAVCAALGLLFAFLSLMFFISPTTFALLFTLGDILMVMATGFI 80

Query:    97 IGPKRQVTMMLDPARIYATAIYIASMIIALFSALYVHNKLLTLLALILEFGALIWYSLSY 156
             +GP +Q+  M +P RI    +++ASMI+ L +       +L +  ++ +  +L++Y+ SY
Sbjct:    81 VGPIKQIKNMAEPHRIICAIVFVASMILTLVAVFLDWGIILVIFFILFQVASLLYYTFSY 140

Query:   157 IPFAR 161
             IP+ R
Sbjct:   141 IPYGR 145

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

MGI|MGI:1917362 Sft2d2 "SFT2 domain containing 2" [Mus musculus (taxid:10090)]

 Score = 267 (99.0 bits), Expect = 3.8e-23, P = 3.8e-23
 Identities = 55/132 (41%), Positives = 82/132 (62%)

Query:    44 TLTTKQRLYGFAICFSVGIFCTLLSLLVFFNPIK----FGITFTFGNLLSLGSTAFLIGP 99
             +L+   R+ GF  CF++GI C++L  L+ + P K    F + +T GN++S+GST FL+GP
Sbjct:    27 SLSWGTRIKGFIACFALGILCSVLGTLLLWVPRKGLGLFAVFYTLGNIMSIGSTVFLMGP 86

Query:   100 KRQVTMMLDPARIYATAIYIASMIIALFSALYVHNKLLTLLALILEFGALIWYSLSYIPF 159
              +Q+  M +P R+ AT + +    + L SA ++ NK L L+  IL+  AL WYSLSYIP+
Sbjct:    87 LKQLKRMFEPTRLIATILVLLCFALTLCSA-FLWNKGLALIFCILQSLALTWYSLSYIPY 145

Query:   160 ARSMVSKIMLAC 171
             AR  V K    C
Sbjct:   146 ARDAVKKCFAVC 157

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0006810 "transport" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

UNIPROTKB|F1RPV2 SFT2D2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 266 (98.7 bits), Expect = 4.8e-23, P = 4.8e-23
 Identities = 55/132 (41%), Positives = 80/132 (60%)

Query:    44 TLTTKQRLYGFAICFSVGIFCTLLSLLVFFNPIK----FGITFTFGNLLSLGSTAFLIGP 99
             +L++  R+ GF  CF+ GI C+LL   + + P K    F + +TFGN+ S+GST FL+GP
Sbjct:    27 SLSSGTRIKGFIACFAAGILCSLLGTFLLWVPQKGLYLFAVFYTFGNIASIGSTVFLMGP 86

Query:   100 KRQVTMMLDPARIYATAIYIASMIIALFSALYVHNKLLTLLALILEFGALIWYSLSYIPF 159
              +Q+  M +P R+ AT + +    + L  A ++ +K L L+  IL+  AL WYSLSYIPF
Sbjct:    87 MKQLKRMFEPTRLIATILVLLCFALTLCFA-FLRHKGLALIFCILQSLALTWYSLSYIPF 145

Query:   160 ARSMVSKIMLAC 171
             AR  V K    C
Sbjct:   146 ARDAVKKCFAVC 157

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

ZFIN|ZDB-GENE-040426-1350 sft2d1 "SFT2 domain containing 1" [Danio rerio (taxid:7955)]

 Score = 263 (97.6 bits), Expect = 1.0e-22, P = 1.0e-22
 Identities = 53/132 (40%), Positives = 80/132 (60%)

Query:    44 TLTTKQRLYGFAICFSVGIFCTLLSLLVFFNP---IK-FGITFTFGNLLSLGSTAFLIGP 99
             TL+   RL  F ICF+ GI C++L   + F P   IK F + +T GN+ +L ST FL+GP
Sbjct:    28 TLSFSTRLKWFIICFAAGILCSILGTALLFLPKAGIKLFAVFYTLGNIAALSSTCFLMGP 87

Query:   100 KRQVTMMLDPARIYATAIYIASMIIALFSALYVHNKLLTLLALILEFGALIWYSLSYIPF 159
              +Q+  M +P R+ AT + +  +++ L +  + + K L ++  IL+F A+ WYS+SYIPF
Sbjct:    88 VKQLKRMFEPTRLIATILVLLFLVLTLCAVFWWNKKGLAIIFCILQFLAMTWYSISYIPF 147

Query:   160 ARSMVSKIMLAC 171
             AR  V K    C
Sbjct:   148 ARDAVIKCCTTC 159

GO:0006810 "transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O95562	SFT2B_HUMAN	No assigned EC number	0.3963	0.8465	0.9312	yes	no
Q5U3Y5	SFT2A_RAT	No assigned EC number	0.3823	0.8409	0.9308	yes	no
Q8VD57	SFT2B_MOUSE	No assigned EC number	0.3818	0.8465	0.9371	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_Genewise1_v1.C_LG_IV4540 hypothetical protein (178 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	176
pfam04178	116	pfam04178, Got1, Got1/Sft2-like family	2e-27
COG5102	201	COG5102, SFT2, Membrane protein involved in ER to	9e-10

>gnl|CDD|217941 pfam04178, Got1, Got1/Sft2-like family

 Score = 99.1 bits (248), Expect = 2e-27
 Identities = 46/112 (41%), Positives = 64/112 (57%), Gaps = 4/112 (3%)

Query: 60  VGIFCTLLSLLVFFNPI----KFGITFTFGNLLSLGSTAFLIGPKRQVTMMLDPARIYAT 115
           +G+    L     F P+     F +  T GN+L LGST FLIGPK+Q+  M    R+ AT
Sbjct: 2   IGVLFFGLGFFFLFLPVLLLFPFALLLTLGNILFLGSTGFLIGPKKQLKFMFSKERLPAT 61

Query: 116 AIYIASMIIALFSALYVHNKLLTLLALILEFGALIWYSLSYIPFARSMVSKI 167
            ++  S+++ L+ AL + +  LTLL  I +  ALIWY LSYIP  R  V K+
Sbjct: 62  IVFFVSLVLTLYFALILKSYGLTLLFSIFQILALIWYLLSYIPGGRPGVKKV 113

Traffic through the yeast Golgi complex depends on a member of the syntaxin family of SNARE proteins, Sed5, present in early Golgi cisternae. Got1 is thought to facilitate Sed5-dependent fusion events. This is a family of sequences derived from eukaryotic proteins. They are similar to a region of a SNARE-like protein required for traffic through the Golgi complex, SFT2 protein. This is a conserved protein with four putative transmembrane helices, thought to be involved in vesicular transport in later Golgi compartments. Length = 116

>gnl|CDD|227433 COG5102, SFT2, Membrane protein involved in ER to Golgi transport [Intracellular trafficking and secretion]

 Score = 54.9 bits (132), Expect = 9e-10
 Identities = 30/132 (22%), Positives = 61/132 (46%), Gaps = 4/132 (3%)

Query: 45  LTTKQRLYGFAICF----SVGIFCTLLSLLVFFNPIKFGITFTFGNLLSLGSTAFLIGPK 100
           L+  +R   F+ C     +   F   +  ++   P KF + +T G+LL +    FL+G +
Sbjct: 62  LSRFERAVLFSACLLGAGACSAFLYFMFPVLRLKPRKFILLWTMGSLLFVLMFGFLLGFR 121

Query: 101 RQVTMMLDPARIYATAIYIASMIIALFSALYVHNKLLTLLALILEFGALIWYSLSYIPFA 160
             +  +    R+  ++ +  + ++ ++  L     LL +    L+  + I YS+++ PF 
Sbjct: 122 AYLEGLTSKERLPHSSWFFGTTLLTIYVVLKYKRTLLNIAFCFLQVVSFIMYSITFFPFG 181

Query: 161 RSMVSKIMLACF 172
            S VS I+   F
Sbjct: 182 TSGVSSIISMFF 193

Length = 201

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	176
KOG2887	175	consensus Membrane protein involved in ER to Golgi	100.0
PF04178	118	Got1: Got1/Sft2-like family ; InterPro: IPR007305	100.0
COG5102	201	SFT2 Membrane protein involved in ER to Golgi tran	99.96
KOG1743	137	consensus Ferric reductase-like proteins [Inorgani	93.21
COG5120	129	GOT1 Membrane protein involved in Golgi transport	92.66

>KOG2887 consensus Membrane protein involved in ER to Golgi transport [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.6e-51  Score=330.31  Aligned_cols=169  Identities=43%  Similarity=0.762  Sum_probs=156.0

Q ss_pred             ChhhhHHHHHHHHHhCCCCcchhhhhhcCCCCcchhhhhccc-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhh----hh
Q 030478            1 MEKMNHAFEKMKMLVGMDVEDEESAVENDSNSFAFIDDFNRQ-CTLTTKQRLYGFAICFSVGIFCTLLSLLVFF----NP   75 (176)
Q Consensus         1 ~~~~~~~~~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~LS~~qRi~gF~~c~~~g~~~~~ls~~~l~----~p   75 (176)
                      |||.|+++++-+...|.++.|++      +|+++..+|.++. ++|||+||+++|++|++.|++|+.+|.+++.    .|
T Consensus         1 md~l~~~~~~~~~~sg~d~~~~~------~~~~~~~~~~~~~~fsLs~~qR~~~F~~cl~~gv~c~~l~~~lf~v~~~~~   74 (175)
T KOG2887|consen    1 MDKLRSARSANDVLSGQDPGDHQ------TEERSFTSDLQESTFSLSRTQRIMGFGICLAGGVLCFLLAMVLFPVLVVSP   74 (175)
T ss_pred             CchhhhhHhhhhcccCCCCCccc------cccccchhhhhhhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence            89999999999988887765543      2456677777776 9999999999999999999999999988764    56


Q ss_pred             HHHHHHHhHHHHHHHhhhhHhccHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh
Q 030478           76 IKFGITFTFGNLLSLGSTAFLIGPKRQVTMMLDPARIYATAIYIASMIIALFSALYVHNKLLTLLALILEFGALIWYSLS  155 (176)
Q Consensus        76 ~kFallyTlGsil~l~s~~FL~Gp~~q~k~m~~~~R~~~t~~yl~sl~~TL~~al~~~s~ll~ll~~i~Q~~al~wY~lS  155 (176)
                      +|||++||+||+++++|++||+||++|+|||++|+|+++|+.|++++++|+|+|+++||++|+++++++|++|++||++|
T Consensus        75 ~kFal~~TlGnll~i~sf~fLmGP~~ql~~m~~p~Rl~~T~~~l~~~~~Tly~al~~ks~iLtllf~ilq~laliwYslS  154 (175)
T KOG2887|consen   75 RKFALLYTLGNLLAIGSFAFLMGPVSQLKHMFSPERLPATLSYLATMVLTLYVALWLKSKILTLLFCILQVLALIWYSLS  154 (175)
T ss_pred             ceeehhHHHHHHHHHHHHHHHHhHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccchHHHHHHHHhhcccCC
Q 030478          156 YIPFARSMVSKIMLACFDTE  175 (176)
Q Consensus       156 yiP~G~~~l~~~~~~~~~~~  175 (176)
                      ||||||++++++.+++++.+
T Consensus       155 yiP~g~~gv~~~~s~~~~s~  174 (175)
T KOG2887|consen  155 YIPFGRSGVSKLSSAFTSSL  174 (175)
T ss_pred             hCcchhhHHHHHHHHHHHhc
Confidence            99999999999999998765

>PF04178 Got1: Got1/Sft2-like family ; InterPro: IPR007305 Traffic through the yeast Golgi complex depends on a member of the syntaxin family of SNARE proteins, Sed5, present in early Golgi cisternae

Probab=100.00  E-value=8.9e-35  Score=222.69  Aligned_cols=114  Identities=47%  Similarity=0.815  Sum_probs=104.9

Q ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHHHHHhhhhHhccHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHhhhH
Q 030478           56 ICFSVGIFCTLLSLLVFFNPIKFGITFTFGNLLSLGSTAFLIGPKRQVTMMLDPARIYATAIYIASMIIALFSALYVHNK  135 (176)
Q Consensus        56 ~c~~~g~~~~~ls~~~l~~p~kFallyTlGsil~l~s~~FL~Gp~~q~k~m~~~~R~~~t~~yl~sl~~TL~~al~~~s~  135 (176)
                      +|+++|.++.+++.++ .+|+|||++||+||+++++|++||+||++|+|+|++|+|+++|++|++|+++|+|+++++|++
T Consensus         5 ~~~~l~~~~~~~~~~~-~~~~kFa~l~tlGnil~l~s~~fL~Gp~~q~k~m~~~~R~~~t~~y~~~l~~tl~~~~~~~~~   83 (118)
T PF04178_consen    5 ICFFLSLIFFFLGVLL-FFPRKFAILYTLGNILFLASTFFLIGPKKQFKFMFSPKRLIATIIYFISLILTLYFAFILKSY   83 (118)
T ss_pred             HHHHHHHHHHHhhhhh-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHhhH
Confidence            4555665555555444 899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHhh
Q 030478          136 LLTLLALILEFGALIWYSLSYIPFARSMVSKIMLA  170 (176)
Q Consensus       136 ll~ll~~i~Q~~al~wY~lSyiP~G~~~l~~~~~~  170 (176)
                      +++++++++|++|++||++||||+||+++++++++
T Consensus        84 ~l~llf~~~q~~al~wy~~s~iP~g~~~~~~~~~~  118 (118)
T PF04178_consen   84 GLTLLFSIFQFPALIWYLLSYIPFGRPGLKKFFSM  118 (118)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHhcC
Confidence            99999999999999999999999999999998763

Got1 is thought to facilitate Sed5-dependent fusion events []. This is a family of sequences derived from eukaryotic proteins. They are similar to a region of a SNARE-like protein required for traffic through the Golgi complex, SFT2 protein (P38166 from SWISSPROT) []. This is a conserved protein with four putative transmembrane helices, thought to be involved in vesicular transport in later Golgi compartments []. ; GO: 0016192 vesicle-mediated transport

>COG5102 SFT2 Membrane protein involved in ER to Golgi transport [Intracellular trafficking and secretion]

Probab=99.96  E-value=1.3e-29  Score=204.96  Aligned_cols=131  Identities=23%  Similarity=0.412  Sum_probs=122.2

Q ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHHHHHH----hhhhHHHHHHHhHHHHHHHhhhhHhccHHHHHHhhcCCchhHHHHH
Q 030478           42 QCTLTTKQRLYGFAICFSVGIFCTLLSLLV----FFNPIKFGITFTFGNLLSLGSTAFLIGPKRQVTMMLDPARIYATAI  117 (176)
Q Consensus        42 ~~~LS~~qRi~gF~~c~~~g~~~~~ls~~~----l~~p~kFallyTlGsil~l~s~~FL~Gp~~q~k~m~~~~R~~~t~~  117 (176)
                      .++||++||...|.+|+..+..|+.++.++    .++|+||.++||+||++++.+++++.||.+|+|+++++||++.+..
T Consensus        59 ~F~Lsr~eR~vlF~~ClLGa~ac~a~~~fmfpVl~lkPrkFiLlwTmgslLfvl~Fg~l~Gf~ayl~~Lts~erlp~s~~  138 (201)
T COG5102          59 EFGLSRFERAVLFSACLLGAGACSAFLYFMFPVLRLKPRKFILLWTMGSLLFVLMFGFLLGFRAYLEGLTSKERLPHSSW  138 (201)
T ss_pred             hhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCccceeeehhHHHHHHHHHHHHHHhHHHHHHhhhhhhccchhHH
Confidence            469999999999999988888888666543    3699999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHhhcc
Q 030478          118 YIASMIIALFSALYVHNKLLTLLALILEFGALIWYSLSYIPFARSMVSKIMLACF  172 (176)
Q Consensus       118 yl~sl~~TL~~al~~~s~ll~ll~~i~Q~~al~wY~lSyiP~G~~~l~~~~~~~~  172 (176)
                      |+++..+|+|+++..|+++|++.|+++|++++++|.++|+|+|.++++...++.+
T Consensus       139 ff~t~l~Tiy~~~k~k~t~L~i~f~~l~vvsfi~y~itffPfGt~gvs~~~sm~~  193 (201)
T COG5102         139 FFGTTLLTIYVVLKYKRTLLNIAFCFLQVVSFIMYSITFFPFGTSGVSSIISMFF  193 (201)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999998876654

>KOG1743 consensus Ferric reductase-like proteins [Inorganic ion transport and metabolism]

Probab=93.21  E-value=0.13  Score=40.70  Aligned_cols=109  Identities=19%  Similarity=0.362  Sum_probs=75.9

Q ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHhHHHHHHHhhhhHhccHHHHHHhhcCCchhHHHHHHHHHHHHHHH----HHHHh
Q 030478           57 CFSVGIFCTLLSLLVFFNPIKFGITFTFGNLLSLGSTAFLIGPKRQVTMMLDPARIYATAIYIASMIIALF----SALYV  132 (176)
Q Consensus        57 c~~~g~~~~~ls~~~l~~p~kFallyTlGsil~l~s~~FL~Gp~~q~k~m~~~~R~~~t~~yl~sl~~TL~----~al~~  132 (176)
                      .-+.|.++++++..+++.-.    +-++||++.+.+..++.|.++-+.-.++++|.-.|+.+....+.+++    ..+..
T Consensus        13 ~TgfG~ff~l~Gii~ffD~a----LLa~GNlLfi~GvsliiG~~~t~~FF~r~~k~kGti~F~~G~l~vl~~wPi~Gm~l   88 (137)
T KOG1743|consen   13 LTGFGVFFFLFGIILFFDKA----LLAMGNLLFIIGVSLIIGFRKTMQFFFRRQKMKGTISFLGGVLLVLFGWPIFGMIL   88 (137)
T ss_pred             EechhHHHHHHHHHHHHhhH----HHHhcchHHHHhHHHhhcchhhhhhheehhhcceeeehhhhHHHHHHhhHHHHHHH
Confidence            34567777777777665443    34569999999999999999999999999999999999999888875    34444


Q ss_pred             hhHHHHHHHH-----HHHHHHHHH--HHHhcccchHHHHHHHHh
Q 030478          133 HNKLLTLLAL-----ILEFGALIW--YSLSYIPFARSMVSKIML  169 (176)
Q Consensus       133 ~s~ll~ll~~-----i~Q~~al~w--Y~lSyiP~G~~~l~~~~~  169 (176)
                      -+|.+-+++-     +++++--+=  =.+-+.|+=|+-+.+.++
T Consensus        89 E~~Gff~LF~gF~P~i~~flrs~p~lG~i~~~p~i~~~~drl~~  132 (137)
T KOG1743|consen   89 ETYGFFVLFRGFFPVIVVFLRSIPVLGWILNLPGIRSFLDRLAG  132 (137)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHcCccccccccCccHHHHHHHhcC
Confidence            5555444432     334332111  124577777777766543

>COG5120 GOT1 Membrane protein involved in Golgi transport [Intracellular trafficking and secretion]

Probab=92.66  E-value=1.8  Score=33.74  Aligned_cols=109  Identities=18%  Similarity=0.421  Sum_probs=68.2

Q ss_pred             HHHHHHHHHHHHhhhhHHHHHHHhHHHHHHHhhhhHhccHHHHHHhhcCCchhHHHHHHHHHHHHHHHHH----HHhhhH
Q 030478           60 VGIFCTLLSLLVFFNPIKFGITFTFGNLLSLGSTAFLIGPKRQVTMMLDPARIYATAIYIASMIIALFSA----LYVHNK  135 (176)
Q Consensus        60 ~g~~~~~ls~~~l~~p~kFallyTlGsil~l~s~~FL~Gp~~q~k~m~~~~R~~~t~~yl~sl~~TL~~a----l~~~s~  135 (176)
                      +|..++..+.++++.-.    +-++||++.+.+...+.|..|-.--..+|+|+.-++.+.....+++|==    +...+.
T Consensus        16 ~Gflffl~Gif~ffDra----Ll~lGNlL~iiG~fliags~ks~~fflRp~k~~Gsv~F~~G~ll~l~~fp~~GF~~E~L   91 (129)
T COG5120          16 IGFLFFLVGIFLFFDRA----LLILGNLLMIIGIFLIAGSRKSMFFFLRPEKIQGSVIFAMGVLLLLYRFPMFGFLLETL   91 (129)
T ss_pred             hhHHHHHHHHHHHhhhH----HHHhcCHHHHHHHHHHhcccceEEEEEchhHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45555555555544322    4567999999999999999887777889999999999999998888732    111221


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHhhcccC
Q 030478          136 LLTLLALILEFGALIWYSLSYIPFARSMVSKIMLACFDT  174 (176)
Q Consensus       136 ll~ll~~i~Q~~al~wY~lSyiP~G~~~l~~~~~~~~~~  174 (176)
                      .  ++...-.+.-.+--.+-..|+++..+.+..+.-.+|
T Consensus        92 G--~f~Lf~df~p~i~~fLRt~p~igp~idrl~g~~~~P  128 (129)
T COG5120          92 G--LFLLFRDFIPTIRTFLRTLPLIGPYIDRLLGRLMRP  128 (129)
T ss_pred             H--HHHHHHHHHHHHHHHHHhccccchhHHhhhceecCC
Confidence            1  111111222222233455676666666655544443

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00