Citrus Sinensis ID: 030500

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170------
Protein Sequence
MALMASSNGYCYYNYKKKYNKRYNCSTVPRITLSQSQEPRDQTSRREIILRSSEVAVIGAIFNLSGKKPEYLGVQKNQQALALCPATKNCISTAENISDLTHYAPPWNYNRGRKKPVSREVAMEELLQVIKSTKPDRFTPRLVEKKDDYVHVEYESPVLGVGLAHHTFVQLFFHQA
Secondary Structure (PSIPRED)
ccccccccccccEEEEEccccccccccccEEEEccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccEEEccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccEEEEEEccEEEEEEEccEEccccccccEEEEEEccc
Secondary Structure Prediction (SSPRO)
cccccccccEcccccccccccccccccHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccEccccccccccHHHHHHHHHHHHHHccccccccEEEEEcccEEEEEEccHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
malmassngycyynykkkynkryncstvpritlsqsqeprdqtsrrEIILRSSEVAVIGAIFnlsgkkpeylgVQKNQQalalcpatkncistaenisdlthyappwnynrgrkkpvsREVAMEELLQVIKstkpdrftprlvekkddyvhveyespvlgvgLAHHTFVQLFFHQA
Flexible Loop (DISEMBL)
MALMASSNGYCYYNYKKKYNKRYNCSTVpritlsqsqeprdqtsrreiilrsseVAVIGAIFNLSGKKPEYLGVQKNQQALALCPATKNCISTAENisdlthyappwnynrgrKKPVSREVAMEELLQvikstkpdrftprlvekkddyVHVEYESPVLGVGLAHHTFVQLFFHQA
Low Complexity Region (SEG)
MALMASSngycyynykkkynkrynCSTVPRITLSQSQEPRDQTSRREIILRSSEVAVIGAIFNLSGKKPEYLGVQKNQQALALCPATKNCISTAENISDLTHYAPPWNYNRGRKKPVSREVAMEELLQVIKSTKPDRFTPRLVEKKDDYVHVEYESPVLGVGLAHHTFVQLFFHQA
Disordered region (IsUnstruct)
*******NGYCYYNYKKKYNKRYNCSTVPRIT***************IILRSSEVAVIGAIFNLSGKKPEYLGVQKNQQALALCPATKNCISTAENISDLTHYAPPWNYNRG********VAMEELLQVIKS***DRFTPRLVEKKDDYVHVEYESPVLGVGLAHHTFVQLFFH**
Disordered Region (DISOPRED)
***********YYNYKKKYNKRYNCSTVPRI****************IILRSSEVAVIGAIFNLSGKKPEYLGVQKNQQALALCPATKNCISTAENISDLTHYAPPWNYNRGRKKPVSREVAMEELLQVIKSTKPDRFTPRLVEKKDDYVHVEYESPVLGVGLAHHTFVQLFFHQ*
Disordered Region (DISEMBL)
MALMASSNGYCYYNYKKKYNKRYNCSTVPRITL***********RREIILRSSEVAVIGAIFNLSGKKPEYLGVQKNQQALALCPATKNCISTAENISDLTHYAPPWNYNRGRKKPVSREVAMEELLQVIKSTKPDRFTPRLVEKKDDYVHVEYESPVLGVGLAHHTFVQLFFHQA
Disordered Region (DISPRO)
******SNGYCYYNYKKKYNKRYNCSTVPRITLSQSQEPRDQTSRREIILRSSEVAVIGAIFNLSGKKPEYLGVQKNQQALALCPATKNCISTAENISDLTHYAPPWNYNRGRKKPVSREVAMEELLQVIKSTKPDRFTPRLVEKKDDYVHVEYESPVLGVGLAHHTFVQLFFHQA
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MALMASSNGYCYYNYKKKYNKRYNCSTVPRITLSQSQEPRDQTSRREIILRSSEVAVIGAIFNLSGKKPEYLGVQKNQQALALCPATKNCISTAENISDLTHYAPPWNYNRGRKKPVSREVAMEELLQVIKSTKPDRFTPRLVEKKDDYVHVEYESPVLGVGLAHHTFVQLFFHQA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	176
255541316	223	conserved hypothetical protein [Ricinus	0.909	0.717	0.7	4e-61
449454636	222	PREDICTED: uncharacterized protein LOC10	0.892	0.707	0.652	9e-56
224063866	219	predicted protein [Populus trichocarpa]	0.914	0.735	0.630	4e-54
449498986	263	PREDICTED: uncharacterized protein LOC10	0.761	0.509	0.725	5e-54
356524043	219	PREDICTED: uncharacterized protein LOC10	0.892	0.716	0.615	5e-52
357469573	220	hypothetical protein MTR_4g023550 [Medic	0.903	0.722	0.618	7e-52
297817400	216	hypothetical protein ARALYDRAFT_486553 [	0.897	0.731	0.642	8e-52
15232964	214	uncharacterized protein [Arabidopsis tha	0.880	0.724	0.650	5e-51
296089151	321	unnamed protein product [Vitis vinifera]	0.897	0.492	0.640	1e-50
225453911	218	PREDICTED: uncharacterized protein LOC10	0.897	0.724	0.640	4e-50

>gi|255541316|ref|XP_002511722.1| conserved hypothetical protein [Ricinus communis] gi|223548902|gb|EEF50391.1| conserved hypothetical protein [Ricinus communis]

 Score =  239 bits (609), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 119/170 (70%), Positives = 140/170 (82%), Gaps = 10/170 (5%)

Query: 1   MALMA--SSNGYCYYNYKKKYNKRYNCSTVPRITLSQSQ-------EPRDQTSRREIILR 51
           M  MA  +++ YC Y YK + +K +N    PR+ LSQ Q       +P DQ +RREIILR
Sbjct: 1   MVSMAAPTTSAYCGYYYKTR-SKNFNGLIRPRVILSQQQNDNDNNNKPSDQIARREIILR 59

Query: 52  SSEVAVIGAIFNLSGKKPEYLGVQKNQQALALCPATKNCISTAENISDLTHYAPPWNYNR 111
           SSE+AV+GAIFNLSGKKPEYLGVQKNQQALALCPATKNCIST+ENISDLTHY PPWNYN 
Sbjct: 60  SSEIAVVGAIFNLSGKKPEYLGVQKNQQALALCPATKNCISTSENISDLTHYTPPWNYNG 119

Query: 112 GRKKPVSREVAMEELLQVIKSTKPDRFTPRLVEKKDDYVHVEYESPVLGV 161
            RKKPV++EVAM+ELLQVI+STKPD+FTPR+ EK DDYVHVEY+SP+LG+
Sbjct: 120 NRKKPVNKEVAMKELLQVIQSTKPDKFTPRVAEKSDDYVHVEYQSPILGL 169

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449454636|ref|XP_004145060.1| PREDICTED: uncharacterized protein LOC101221074 [Cucumis sativus] gi|449472979|ref|XP_004153749.1| PREDICTED: uncharacterized protein LOC101211056 [Cucumis sativus]

 Score =  221 bits (563), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 109/167 (65%), Positives = 134/167 (80%), Gaps = 10/167 (5%)

Query: 4   MASSNGYCYYNYKKKYNKRYNCS--TVPRITLSQSQEPR----DQTSRREIILRSSEVAV 57
           MASS  +C+ N+ +   +  +    T PRI L   Q+ R    +  +RREI+LRSSE+AV
Sbjct: 1   MASSTTHCFCNHYRGTARLRSVPIPTFPRILLCHQQQNRGNSAENVNRREIVLRSSELAV 60

Query: 58  IGAIFNLSGKKPEYLGVQKNQQALALCPATKNCISTAENISDLTHYAPPWNYN----RGR 113
           IGAIFNLSGKKPEYLGVQKNQ +LALCPATKNCISTAEN+SDLTHY PPW+YN    RG+
Sbjct: 61  IGAIFNLSGKKPEYLGVQKNQPSLALCPATKNCISTAENVSDLTHYTPPWDYNPEEGRGK 120

Query: 114 KKPVSREVAMEELLQVIKSTKPDRFTPRLVEKKDDYVHVEYESPVLG 160
           K P+SREVAM+EL+QVIKST+PD+FTP++VE+KDDY+ VEYESP+LG
Sbjct: 121 KDPISREVAMQELIQVIKSTRPDKFTPKIVEQKDDYLLVEYESPILG 167

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224063866|ref|XP_002301293.1| predicted protein [Populus trichocarpa] gi|222843019|gb|EEE80566.1| predicted protein [Populus trichocarpa]

 Score =  216 bits (549), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 104/165 (63%), Positives = 129/165 (78%), Gaps = 4/165 (2%)

Query: 1   MALMASSNGYCYYNYKKKYNKRYNCSTVPRITLSQSQE----PRDQTSRREIILRSSEVA 56
           MA +A    Y     K +  + +N    PRI   Q Q+    P+ Q +RREI+LRSSE+A
Sbjct: 1   MASVAPPKAYPGCLCKARSIEHHNGFARPRILFCQQQDNDNKPQHQIARREIVLRSSELA 60

Query: 57  VIGAIFNLSGKKPEYLGVQKNQQALALCPATKNCISTAENISDLTHYAPPWNYNRGRKKP 116
           V GAI NL GKKP+YLGVQKNQ +L+LCPATKNCIST+ENI+DLTHYAPPWNYN GRKKP
Sbjct: 61  VAGAILNLGGKKPDYLGVQKNQPSLSLCPATKNCISTSENITDLTHYAPPWNYNGGRKKP 120

Query: 117 VSREVAMEELLQVIKSTKPDRFTPRLVEKKDDYVHVEYESPVLGV 161
           VS+E AMEELL V++STKP++FTP++VE+ DDYVHVEY+SP+LG+
Sbjct: 121 VSKEQAMEELLDVVRSTKPEKFTPKIVERDDDYVHVEYQSPILGL 165

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449498986|ref|XP_004160689.1| PREDICTED: uncharacterized protein LOC101227119 [Cucumis sativus]

 Score =  215 bits (548), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 103/142 (72%), Positives = 122/142 (85%), Gaps = 8/142 (5%)

Query: 27  TVPRITLSQSQEPRDQTS----RREIILRSSEVAVIGAIFNLSGKKPEYLGVQKNQQALA 82
           T PRI L   Q+ R  ++    RREI+LRSSE+AVIGAIFNLSGKKPEYLGVQKNQ +LA
Sbjct: 67  TFPRILLCHQQQNRGNSAENVNRREIVLRSSELAVIGAIFNLSGKKPEYLGVQKNQPSLA 126

Query: 83  LCPATKNCISTAENISDLTHYAPPWNYN----RGRKKPVSREVAMEELLQVIKSTKPDRF 138
           LCPATKNCISTAEN+SDLTHY PPW+YN    RG+K P+SREVAM+EL+QVIKST+PD+F
Sbjct: 127 LCPATKNCISTAENVSDLTHYTPPWDYNPEEGRGKKDPISREVAMQELIQVIKSTRPDKF 186

Query: 139 TPRLVEKKDDYVHVEYESPVLG 160
           TP++VE+KDDY+ VEYESP+LG
Sbjct: 187 TPKIVEQKDDYLLVEYESPILG 208

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356524043|ref|XP_003530642.1| PREDICTED: uncharacterized protein LOC100806732 [Glycine max]

 Score =  209 bits (531), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 101/164 (61%), Positives = 126/164 (76%), Gaps = 7/164 (4%)

Query: 4   MASSNGYCYYNYKKKYNK-RYNCSTVPRITLSQS-----QEPRDQTSRREIILRSSEVAV 57
           MASS  +C   ++ K N  R + S++PRI    +       P DQ +RR++ILRSSE+A 
Sbjct: 1   MASSFSFCTLKFRTKPNDSRSSASSLPRILFCHNLHDDIHTPTDQINRRQLILRSSEIAT 60

Query: 58  IGAIFNLSGKKPEYLGVQKNQQALALCPATKNCISTAENISDLTHYAPPWNYN-RGRKKP 116
           IGAIF+ SGKKP+YLGVQKN  ALALCP T+NC+ST+ENISD THYAP WNYN  GRK P
Sbjct: 61  IGAIFDFSGKKPDYLGVQKNPPALALCPVTRNCVSTSENISDRTHYAPLWNYNPEGRKNP 120

Query: 117 VSREVAMEELLQVIKSTKPDRFTPRLVEKKDDYVHVEYESPVLG 160
           VSRE AMEEL+ VI+ST PD+FTPR+VE+K+DY+HVEY+S +LG
Sbjct: 121 VSREEAMEELIDVIESTTPDKFTPRIVERKEDYIHVEYQSSILG 164

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357469573|ref|XP_003605071.1| hypothetical protein MTR_4g023550 [Medicago truncatula] gi|355506126|gb|AES87268.1| hypothetical protein MTR_4g023550 [Medicago truncatula]

 Score =  208 bits (529), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 102/165 (61%), Positives = 125/165 (75%), Gaps = 6/165 (3%)

Query: 1   MALMASSNGYCYYNYKKKYNKRYNCSTVPRITLSQSQEPRD----QTSRREIILRSSEVA 56
           MA  +SS  +C   +        N S +PRI L   QE  D    Q +RR++ILRSSE+A
Sbjct: 1   MASTSSSTTFCNLKFHSTRPNNNNVSFLPRI-LHMKQEEEDNNTNQINRRQLILRSSEIA 59

Query: 57  VIGAIFNLSGKKPEYLGVQKNQQALALCPATKNCISTAENISDLTHYAPPWNYN-RGRKK 115
            IGAIFN SGKKPEYLGVQKN  ALALCPATKNC+ST+EN++DLTHYAPPWNYN  GRK 
Sbjct: 60  TIGAIFNFSGKKPEYLGVQKNSSALALCPATKNCVSTSENVNDLTHYAPPWNYNPEGRKS 119

Query: 116 PVSREVAMEELLQVIKSTKPDRFTPRLVEKKDDYVHVEYESPVLG 160
           PVSRE A+EEL++VI+ T+PD+FTP++VE+K+DYV VEY S +LG
Sbjct: 120 PVSREEAVEELIEVIELTRPDKFTPKIVERKEDYVRVEYRSSILG 164

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297817400|ref|XP_002876583.1| hypothetical protein ARALYDRAFT_486553 [Arabidopsis lyrata subsp. lyrata] gi|297322421|gb|EFH52842.1| hypothetical protein ARALYDRAFT_486553 [Arabidopsis lyrata subsp. lyrata]

 Score =  208 bits (529), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 106/165 (64%), Positives = 128/165 (77%), Gaps = 7/165 (4%)

Query: 1   MALMASSNGYCYYNYKKKYNKRYNCSTVPRITLSQSQEPRDQ----TSRREIILRSSEVA 56
           MA MAS    C Y++  K  ++   S   RI+ S  +   D+      RRE+IL+SSE+A
Sbjct: 1   MASMASPT-TCLYHHNHKCRRKLG-SDARRISASIPENSDDKHPKLIGRREVILKSSELA 58

Query: 57  VIGAIFNLSGKKPEYLGVQKNQQALALCPATKNCISTAENISDLTHYAPPWNYNRGRKKP 116
           +IGAIF LSGKKP+YLGVQKN++ LALCPAT NCIST+ENISD  HYAPPWNYN GRK P
Sbjct: 59  MIGAIFQLSGKKPDYLGVQKNER-LALCPATNNCISTSENISDRVHYAPPWNYNGGRKTP 117

Query: 117 VSREVAMEELLQVIKSTKPDRFTPRLVEKKDDYVHVEYESPVLGV 161
           V+R+VAM+ELL VIKS KPD+FTPR+VEKKDDYVHVEYESP+LG+
Sbjct: 118 VNRQVAMKELLNVIKSVKPDKFTPRIVEKKDDYVHVEYESPILGL 162

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15232964|ref|NP_191640.1| uncharacterized protein [Arabidopsis thaliana] gi|7329691|emb|CAB82685.1| putative protein [Arabidopsis thaliana] gi|110741004|dbj|BAE98596.1| hypothetical protein [Arabidopsis thaliana] gi|117168213|gb|ABK32189.1| At3g60810 [Arabidopsis thaliana] gi|332646589|gb|AEE80110.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  205 bits (522), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 108/166 (65%), Positives = 130/166 (78%), Gaps = 11/166 (6%)

Query: 1   MALMASSNGYCYYNYKKK-----YNKRYNCSTVPRITLSQSQEPRDQTSRREIILRSSEV 55
           MA MAS    C Y++K +     Y +R + S +P    S  + P+    RR+IILRSSE+
Sbjct: 1   MASMASPTT-CLYHHKCRRKLVFYARRISAS-IPET--SYDKHPK-LIGRRDIILRSSEL 55

Query: 56  AVIGAIFNLSGKKPEYLGVQKNQQALALCPATKNCISTAENISDLTHYAPPWNYNRGRKK 115
           A+IGAIF LSGKKP+YLGVQKN++ LALCPAT NCIST+ENISD  HYAPPWNYN GRK 
Sbjct: 56  AMIGAIFQLSGKKPDYLGVQKNER-LALCPATNNCISTSENISDRVHYAPPWNYNGGRKT 114

Query: 116 PVSREVAMEELLQVIKSTKPDRFTPRLVEKKDDYVHVEYESPVLGV 161
           PV+R+VAM+ELL VIKS KPD+FTPR+VEKKDDYVHVEYESP+LG+
Sbjct: 115 PVNRQVAMKELLNVIKSVKPDKFTPRIVEKKDDYVHVEYESPILGL 160

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296089151|emb|CBI38854.3| unnamed protein product [Vitis vinifera]

 Score =  204 bits (519), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 107/167 (64%), Positives = 128/167 (76%), Gaps = 9/167 (5%)

Query: 1   MALMASSNGYCYYNYKKKYNKRYNCSTVPRITLSQ---SQEPRDQTSRREIILRSSEVAV 57
           MA ++S    CYY   + Y   YN ST+PR+ L Q   + +   Q SRREIILRSSE+AV
Sbjct: 104 MASLSSPLTRCYY---RNYTIFYNGSTLPRLILLQQNNTDKRTHQISRREIILRSSEIAV 160

Query: 58  IGAIFNLSGKKPEYLGVQKNQQALALCPATKNCISTAENISDLTHYAPPWNYN---RGRK 114
           +GAIF  SG+KP+YLGVQKN  +L+LCPAT NCIST+EN SDL HY PPWNYN     R+
Sbjct: 161 LGAIFKFSGEKPDYLGVQKNTLSLSLCPATNNCISTSENSSDLIHYTPPWNYNPERGRRR 220

Query: 115 KPVSREVAMEELLQVIKSTKPDRFTPRLVEKKDDYVHVEYESPVLGV 161
           K V RE AMEELLQVIK+TKPD++TPR+VEKKDDYVHVEYESP+LG+
Sbjct: 221 KAVRREEAMEELLQVIKTTKPDKYTPRIVEKKDDYVHVEYESPILGI 267

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225453911|ref|XP_002279226.1| PREDICTED: uncharacterized protein LOC100245470 [Vitis vinifera]

 Score =  202 bits (514), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 107/167 (64%), Positives = 128/167 (76%), Gaps = 9/167 (5%)

Query: 1   MALMASSNGYCYYNYKKKYNKRYNCSTVPRITLSQ---SQEPRDQTSRREIILRSSEVAV 57
           MA ++S    CYY   + Y   YN ST+PR+ L Q   + +   Q SRREIILRSSE+AV
Sbjct: 1   MASLSSPLTRCYY---RNYTIFYNGSTLPRLILLQQNNTDKRTHQISRREIILRSSEIAV 57

Query: 58  IGAIFNLSGKKPEYLGVQKNQQALALCPATKNCISTAENISDLTHYAPPWNYN---RGRK 114
           +GAIF  SG+KP+YLGVQKN  +L+LCPAT NCIST+EN SDL HY PPWNYN     R+
Sbjct: 58  LGAIFKFSGEKPDYLGVQKNTLSLSLCPATNNCISTSENSSDLIHYTPPWNYNPERGRRR 117

Query: 115 KPVSREVAMEELLQVIKSTKPDRFTPRLVEKKDDYVHVEYESPVLGV 161
           K V RE AMEELLQVIK+TKPD++TPR+VEKKDDYVHVEYESP+LG+
Sbjct: 118 KAVRREEAMEELLQVIKTTKPDKYTPRIVEKKDDYVHVEYESPILGI 164

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	176
TAIR|locus:2101826	214	AT3G60810 "AT3G60810" [Arabido	0.715	0.588	0.75	1.8e-48

TAIR|locus:2101826 AT3G60810 "AT3G60810" [Arabidopsis thaliana (taxid:3702)]

 Score = 506 (183.2 bits), Expect = 1.8e-48, P = 1.8e-48
 Identities = 96/128 (75%), Positives = 112/128 (87%)

Query:    34 SQSQEPRDQTSRREIILRSSEVAVIGAIFNLSGKKPEYLGVQKNQQALALCPATKNCIST 93
             S  + P+    RR+IILRSSE+A+IGAIF LSGKKP+YLGVQKN++ LALCPAT NCIST
Sbjct:    35 SYDKHPK-LIGRRDIILRSSELAMIGAIFQLSGKKPDYLGVQKNER-LALCPATNNCIST 92

Query:    94 AENISDLTHYAPPWNYNRGRKKPVSREVAMEELLQVIKSTKPDRFTPRLVEKKDDYVHVE 153
             +ENISD  HYAPPWNYN GRK PV+R+VAM+ELL VIKS KPD+FTPR+VEKKDDYVHVE
Sbjct:    93 SENISDRVHYAPPWNYNGGRKTPVNRQVAMKELLNVIKSVKPDKFTPRIVEKKDDYVHVE 152

Query:   154 YESPVLGV 161
             YESP+LG+
Sbjct:   153 YESPILGL 160


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.131   0.378    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      176       159   0.00091  106 3  11 22  0.37    32
                                                     30  0.43    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  584 (62 KB)
  Total size of DFA:  138 KB (2086 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  14.97u 0.13s 15.10t   Elapsed:  00:00:01
  Total cpu time:  14.98u 0.13s 15.11t   Elapsed:  00:00:01
  Start:  Sat May 11 03:28:37 2013   End:  Sat May 11 03:28:38 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_fgenesh4_pg.C_LG_II1341	hypothetical protein (219 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	eugene3.00170453	hypothetical protein (457 aa)			•						0.407

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	176
pfam07386	118	pfam07386, DUF1499, Protein of unknown function (D	1e-08
COG4446	141	COG4446, COG4446, Uncharacterized protein conserve	1e-07

>gnl|CDD|219394 pfam07386, DUF1499, Protein of unknown function (DUF1499)

 Score = 50.3 bits (121), Expect = 1e-08
 Identities = 22/81 (27%), Positives = 31/81 (38%), Gaps = 10/81 (12%)

Query: 81  LALCPATKNCISTAENIS-DLTHYAPPWNYNRGRKKPVSREVAMEELLQVIKSTKPDRFT 139
           L+ CP + NC+S+A   S D      P           S E A+  LL V ++       
Sbjct: 3   LSTCPDSPNCVSSAAAASRDAYPDIAPLTL------DGSPEEALAALLAVAEALGRTIVV 56

Query: 140 PRLVEKKDDYVHVEYESPVLG 160
               E  D Y+     SP+ G
Sbjct: 57  T---EPTDGYIEATATSPLFG 74

This family consists of several hypothetical bacterial and plant proteins of around 125 residues in length. The function of this family is unknown. Length = 118

>gnl|CDD|226854 COG4446, COG4446, Uncharacterized protein conserved in bacteria [Function unknown]

 Score = 47.9 bits (114), Expect = 1e-07
 Identities = 32/106 (30%), Positives = 49/106 (46%), Gaps = 21/106 (19%)

Query: 57  VIGAIFNLSGKKPEYLGVQKNQQALALCPATKNCISTAENISDLTHYAPPWNYNRGRKKP 116
              A F+ S   P  LGV   +  LA CP + NC+S+    +D  H   P N+       
Sbjct: 7   AFIAAFSGS---PCNLGVDSGR--LAPCPNSPNCVSS--QDADTKHAIAPLNFI------ 53

Query: 117 VSREVAMEELLQVIKSTKPDRFTPR--LVEKKDDYVHVEYESPVLG 160
           +   VA+E+L +++ S       P   +VEK D+Y+  E  S + G
Sbjct: 54  LDPGVAIEQLERILLSL------PGTVIVEKNDNYLRAECTSRLFG 93

Length = 141

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	176
COG4446	141	Uncharacterized protein conserved in bacteria [Fun	99.97
PF07386	118	DUF1499: Protein of unknown function (DUF1499); In	99.87

>COG4446 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.97  E-value=1.7e-32  Score=215.63  Aligned_cols=94  Identities=32%  Similarity=0.542  Sum_probs=89.4

Q ss_pred             HhcCCCCCCcccccCcccccCCCCCCCeeeeccccCCCCcccCCeeccCCCCCCCCHHHHHHHHHHHHHhcCCCCCCcEE
Q 030500           63 NLSGKKPEYLGVQKNQQALALCPATKNCISTAENISDLTHYAPPWNYNRGRKKPVSREVAMEELLQVIKSTKPDRFTPRL  142 (176)
Q Consensus        63 ~~sg~~P~~LGV~dG~~~La~CP~sPNCVSSqa~~~D~~h~I~Pw~y~g~~~~~~s~e~A~~~L~~vl~~~~~~~f~~~I  142 (176)
                      .++|+ |.+|||.+|+  |+|||++|||||||+  .|..|.|+|+.|.++      ++.|.++|++++.++||    ++|
T Consensus        11 ~f~~s-~~~lGV~sgr--lapCpn~PNCVssQ~--adt~h~iaPl~f~~~------~~~a~e~l~~il~~lP~----t~i   75 (141)
T COG4446          11 AFSGS-PCNLGVDSGR--LAPCPNSPNCVSSQD--ADTKHAIAPLNFILD------PGVAIEQLERILLSLPG----TVI   75 (141)
T ss_pred             hhccC-ccccCcccCc--ccCCCCCCCeeeccc--ccchhcccccccccC------HHHHHHHHHHHHhhCCC----ceE
Confidence            57777 9999999998  999999999999998  799999999999986      88999999999999998    999


Q ss_pred             EEecCCEEEEEEEcCCCCcccceEEEeee
Q 030500          143 VEKKDDYVHVEYESPVLGVGLAHHTFVQL  171 (176)
Q Consensus       143 Ve~~~~YL~aef~S~ifGFVDDVEF~~d~  171 (176)
                      |+++++||||||+|++||||||||||+++
T Consensus        76 ve~~~nYl~ae~~Srlf~FVDDlEfyl~~  104 (141)
T COG4446          76 VEKNDNYLRAECTSRLFGFVDDLEFYLPQ  104 (141)
T ss_pred             eecCchHHHHHHHHHHhhcccceEEecCC
Confidence            99999999999999999999999999975

>PF07386 DUF1499: Protein of unknown function (DUF1499); InterPro: IPR010865 This family consists of several hypothetical bacterial and plant proteins of around 125 residues in length

Probab=99.87  E-value=8.4e-22  Score=150.70  Aligned_cols=81  Identities=25%  Similarity=0.390  Sum_probs=74.4

Q ss_pred             ccCCCCCCCeeeeccc-cCCCCcccCCeeccCCCCCCCCHHHHHHHHHHHHHhcCCCCCCcEEE-EecCCEEEEEEEcCC
Q 030500           81 LALCPATKNCISTAEN-ISDLTHYAPPWNYNRGRKKPVSREVAMEELLQVIKSTKPDRFTPRLV-EKKDDYVHVEYESPV  158 (176)
Q Consensus        81 La~CP~sPNCVSSqa~-~~D~~h~I~Pw~y~g~~~~~~s~e~A~~~L~~vl~~~~~~~f~~~IV-e~~~~YL~aef~S~i  158 (176)
                      |++||++||||||++. ..+..|+|+||.|.++      ++++|++|.++++++++    .+|+ +++++|||++++|++
T Consensus         3 l~~~~~~P~~~ss~~~~~~~~~~~i~P~~~~~~------~~~~~~~l~~~~~~~~~----~~v~~~~~~~~l~a~~~s~~   72 (118)
T PF07386_consen    3 LSTCPSSPNCVSSAADAPRDAYPDIAPLTYPGS------PEEAFAALEAAVEALPW----TVVVDDQSDGYLEAVARSPL   72 (118)
T ss_pred             CCCCCCCCCeeeeccccccccCCCCCCEecCCC------HHHHHHHHHHHHHHCCC----cEEeccCCCCEEEEEEEecc
Confidence            8999999999999864 3489999999999986      89999999999999997    7777 888999999999999


Q ss_pred             CCcccceEEEeee
Q 030500          159 LGVGLAHHTFVQL  171 (176)
Q Consensus       159 fGFVDDVEF~~d~  171 (176)
                      |||+|||||+++.
T Consensus        73 ~gF~DDv~i~~~~   85 (118)
T PF07386_consen   73 FGFPDDVEIRVRP   85 (118)
T ss_pred             cCCCcEEEEEEeC
Confidence            9999999999975

The function of this family is unknown.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	176
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 7e-05
 Identities = 25/152 (16%), Positives = 50/152 (32%), Gaps = 38/152 (25%)

Query: 10  YCYYN----YKKKYNKRYNCSTV---PRITLSQS------QEP-RDQTSRR--EIILRSS 53
           Y Y +    ++  +   ++C  V   P+  LS+               + R    +L   
Sbjct: 16  YQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQ 75

Query: 54  EVAVIGAIFNLSGKKPEY------LGVQKNQQALALCPATKNCISTAENISDLTHYAPPW 107
           E  V    F     +  Y      +  ++ Q ++     T+  I   + +         +
Sbjct: 76  EEMV--QKFVEEVLRINYKFLMSPIKTEQRQPSMM----TRMYIEQRDRL---------Y 120

Query: 108 NYNRG-RKKPVSREVAMEELLQVIKSTKPDRF 138
           N N+   K  VSR     +L Q +   +P + 
Sbjct: 121 NDNQVFAKYNVSRLQPYLKLRQALLELRPAKN 152

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00