Citrus Sinensis ID: 030513

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170------
Protein Sequence
MSTLDATRAELALVVLYLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDKSTSLARKVFRLFKFVNDLHALISPVPQGTPLPLVLLGKSKNALLSTFLFLDQVVWLGRSGIYKNKERAELLGRISLFCWMGSSVCSTLVELGELGRLSTSMKKLEKELKDSDKHKVYQPNVSAIS
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHcHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHcccccccc
Coil and Loop (DISEMBL)
MSTLDATRAELALVVLYLNKAEARDKICRAIQYgskflsdgqpgtaqnvdkSTSLARKVFRLFKFVNdlhalispvpqgtplplvllgksknaLLSTFLFLDQVVWLGRSGIYKNKERAELLGRISLFCWMGSSVCSTLVELGELGRLSTSMKKLEKELkdsdkhkvyqpnvsais
Flexible Loop (DISEMBL)
mstldatrAELALVVLYLNKAEARDKICRAIQYGskflsdgqpgtaqNVDKSTSLARKVFRLFKFVNDLHALISPVPQGTPLPLVLLGKSKNALLSTFLFLDQVVWLGRSGIYKNKERAELLGRISLFCWMGSSVCSTLVELGELGRLSTSMKKLEkelkdsdkhkvyqpnvsais
Low Complexity Region (SEG)
MSTLDATRAELALVVLYLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDKSTSLARKVFRLFKFVNDLHALISPVPQGTPLPLVLLGKSKNALLSTFLFLDQVVWLGRSGIYKNKERAELLGRISLFCWMGSSVCSTLVELGELGRLSTSMkklekelkdsdkhkVYQPNVSAIS
Disordered region (IsUnstruct)
********AELALVVLYLNKAEARDKICRAIQYGSKFLS**************SLARKVFRLFKFVNDLHALISPVPQGTPLPLVLLGKSKNALLSTFLFLDQVVWLGRSGIYKNKERAELLGRISLFCWMGSSVCSTLVELGELG******************************
Disordered Region (DISOPRED)
**********LALVVLYLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDKSTSLARKVFRLFKFVNDLHALISP*PQGTPLPLVLLGKSKNALLSTFLFLDQVVWLGRSGIYKNKERAELLGRISLFCWMGSSVCSTLVELGELG***********************P*V****
Disordered Region (DISEMBL)
MSTLDATRAELALVVLYLNKAEARDKICRAIQYGSKFLSDG**********STSLARKVFRLFKFVNDLHALISPVPQGTPLPLVLLGKSKNALLSTFLFLDQVVWLGRSGIYKNKERAELLGRISLFCWMGSSVCSTLVELGELGRLSTSMKKLEKELKDSDKHKVYQPNVSAIS
Disordered Region (DISPRO)
**TLDATRAELALVVLYLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDKSTSLARKVFRLFKFVNDLHALISPVPQGTPLPLVLLGKSKNALLSTFLFLDQVVWLGRSGIYKNKERAELLGRISLFCWMGSSVCSTLVELGELGRLSTSMKKLEKELKDSDKH***********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSTLDATRAELALVVLYLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDKSTSLARKVFRLFKFVNDLHALISPVPQGTPLPLVLLGKSKNALLSTFLFLDQVVWLGRSGIYKNKERAELLGRISLFCWMGSSVCSTLVELGELGRLSTSMKKLEKELKDSDKHKVYQPNVSAIS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	176	2.2.26 [Sep-21-2011]
Q9LQ73	235	Peroxisomal membrane prot	yes	no	0.960	0.719	0.869	1e-84
O80845	236	Peroxisomal membrane prot	no	no	0.937	0.699	0.878	2e-83
Q84JW1	231	Peroxisomal membrane prot	no	no	0.931	0.709	0.871	1e-81
Q10SM7	237	Peroxisomal membrane prot	yes	no	0.943	0.700	0.801	7e-75
Q5VRJ8	233	Peroxisomal membrane prot	no	no	0.960	0.725	0.748	3e-73
Q7XU74	222	Peroxisomal membrane prot	no	no	0.818	0.648	0.281	4e-07
Q01IH3	222	Peroxisomal membrane prot	N/A	no	0.818	0.648	0.281	4e-07
Q10MN2	242	Peroxisomal membrane prot	no	no	0.579	0.421	0.344	1e-05
A2XFQ8	242	Peroxisomal membrane prot	N/A	no	0.579	0.421	0.344	1e-05
Q10MN3	254	Peroxisomal membrane prot	no	no	0.607	0.421	0.310	2e-05

>sp|Q9LQ73|PX11C_ARATH Peroxisomal membrane protein 11C OS=Arabidopsis thaliana GN=PEX11C PE=1 SV=1

 Score =  311 bits (798), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 147/169 (86%), Positives = 162/169 (95%)

Query: 1   MSTLDATRAELALVVLYLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDKSTSLARKVF 60
           MSTL+ TRAEL LVV+YLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDK+TSLARKVF
Sbjct: 1   MSTLETTRAELGLVVVYLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDKNTSLARKVF 60

Query: 61  RLFKFVNDLHALISPVPQGTPLPLVLLGKSKNALLSTFLFLDQVVWLGRSGIYKNKERAE 120
           RLFKFVNDLHALISPVP+GTPLPLVLLGKSKNALLSTFLFLDQ+VWLGR+GIYK+KERAE
Sbjct: 61  RLFKFVNDLHALISPVPKGTPLPLVLLGKSKNALLSTFLFLDQIVWLGRTGIYKDKERAE 120

Query: 121 LLGRISLFCWMGSSVCSTLVELGELGRLSTSMKKLEKELKDSDKHKVYQ 169
           +LGRISLFCWMGSSVC++LVE+GELGRLS S+KKLEKE+ + DKH+  Q
Sbjct: 121 ILGRISLFCWMGSSVCTSLVEVGELGRLSASIKKLEKEIGNKDKHQNEQ 169

Involved in peroxisomal proliferation. Promotes peroxisomal duplication, aggregation or elongation without fission.
Arabidopsis thaliana (taxid: 3702)

>sp|O80845|PX11D_ARATH Peroxisomal membrane protein 11D OS=Arabidopsis thaliana GN=PEX11D PE=1 SV=2

 Score =  308 bits (788), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 145/165 (87%), Positives = 160/165 (96%)

Query: 2   STLDATRAELALVVLYLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDKSTSLARKVFR 61
           +TLD +RAELALVV+YLNKAEARDK+CRAIQYGSKFLS GQPGTAQNVDKSTSLARKVFR
Sbjct: 3   TTLDVSRAELALVVMYLNKAEARDKLCRAIQYGSKFLSGGQPGTAQNVDKSTSLARKVFR 62

Query: 62  LFKFVNDLHALISPVPQGTPLPLVLLGKSKNALLSTFLFLDQVVWLGRSGIYKNKERAEL 121
           LFKFVNDLH LISPVP+GTPLPLVLLGKSKNALLSTFLFLDQ+VWLGRSGIYKNKERAEL
Sbjct: 63  LFKFVNDLHGLISPVPKGTPLPLVLLGKSKNALLSTFLFLDQIVWLGRSGIYKNKERAEL 122

Query: 122 LGRISLFCWMGSSVCSTLVELGELGRLSTSMKKLEKELKDSDKHK 166
           LGRISLFCWMGSSVC+TLVE+GE+GRLS+SMKK+EK LK+ +K++
Sbjct: 123 LGRISLFCWMGSSVCTTLVEVGEMGRLSSSMKKIEKGLKNGNKYQ 167

Involved in peroxisomal proliferation. Promotes peroxisomal duplication, aggregation or elongation without fission.

Arabidopsis thaliana (taxid: 3702)

>sp|Q84JW1|PX11E_ARATH Peroxisomal membrane protein 11E OS=Arabidopsis thaliana GN=PEX11E PE=1 SV=1

 Score =  301 bits (772), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 143/164 (87%), Positives = 155/164 (94%)

Query: 1   MSTLDATRAELALVVLYLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDKSTSLARKVF 60
           M+TLD TRAELAL+VLYLNKAEARDKICRAIQYGSKFLS GQPGTAQ VDK+TSLARKVF
Sbjct: 1   MTTLDLTRAELALIVLYLNKAEARDKICRAIQYGSKFLSGGQPGTAQTVDKNTSLARKVF 60

Query: 61  RLFKFVNDLHALISPVPQGTPLPLVLLGKSKNALLSTFLFLDQVVWLGRSGIYKNKERAE 120
           RLFKFVND H LISPVP+GTPLPLVLLGKSKNALLSTFLFLDQ+VWLGRSGIYKNKER E
Sbjct: 61  RLFKFVNDFHGLISPVPKGTPLPLVLLGKSKNALLSTFLFLDQIVWLGRSGIYKNKERTE 120

Query: 121 LLGRISLFCWMGSSVCSTLVELGELGRLSTSMKKLEKELKDSDK 164
           LLGRISLFCW+GSSVC++ VE+GELGRLS+SMKK+EKELK  D+
Sbjct: 121 LLGRISLFCWLGSSVCTSAVEIGELGRLSSSMKKMEKELKADDE 164

Involved in peroxisomal proliferation. Promotes peroxisomal duplication, aggregation or elongation without fission.

Arabidopsis thaliana (taxid: 3702)

>sp|Q10SM7|PX111_ORYSJ Peroxisomal membrane protein 11-1 OS=Oryza sativa subsp. japonica GN=PEX11-1 PE=2 SV=1

 Score =  279 bits (714), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 133/166 (80%), Positives = 151/166 (90%)

Query: 1   MSTLDATRAELALVVLYLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDKSTSLARKVF 60
           MSTLDATRAEL LVVLYLNKAEARDKICRAIQYGSKF+S+GQPGTAQ+VD+ST+LARKVF
Sbjct: 1   MSTLDATRAELGLVVLYLNKAEARDKICRAIQYGSKFISNGQPGTAQDVDRSTTLARKVF 60

Query: 61  RLFKFVNDLHALISPVPQGTPLPLVLLGKSKNALLSTFLFLDQVVWLGRSGIYKNKERAE 120
           RL K+VNDLH LISP  +GTPL LVLLGKSKNALLSTFLFLDQ VWLGR+GIYKNKER +
Sbjct: 61  RLLKWVNDLHGLISPPAKGTPLTLVLLGKSKNALLSTFLFLDQFVWLGRTGIYKNKERTD 120

Query: 121 LLGRISLFCWMGSSVCSTLVELGELGRLSTSMKKLEKELKDSDKHK 166
            + RISL+CWM SSVC+ LVELGEL RLS SM+KL +EL+D+DK++
Sbjct: 121 RIVRISLYCWMASSVCAGLVELGELKRLSKSMRKLARELRDTDKYE 166

Involved in peroxisomal proliferation.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q5VRJ8|PX115_ORYSJ Peroxisomal membrane protein 11-5 OS=Oryza sativa subsp. japonica GN=PEX11-5 PE=2 SV=1

 Score =  273 bits (699), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 128/171 (74%), Positives = 154/171 (90%), Gaps = 2/171 (1%)

Query: 1   MSTLDATRAELALVVLYLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDKSTSLARKVF 60
           MS+L++ RA+LAL++LYLNKAEARDKICRAIQYGSKF+S+GQPG AQNVDKSTSLARKVF
Sbjct: 1   MSSLESARADLALLILYLNKAEARDKICRAIQYGSKFVSNGQPGPAQNVDKSTSLARKVF 60

Query: 61  RLFKFVNDLHALISPVPQGTPLPLVLLGKSKNALLSTFLFLDQVVWLGRSGIYKNKERAE 120
           RLFKFVNDLHALISP  +GTPLPL+LLGKSKNALLSTFLFLDQ+VW GR+GIYKNKERAE
Sbjct: 61  RLFKFVNDLHALISPPAKGTPLPLILLGKSKNALLSTFLFLDQIVWAGRTGIYKNKERAE 120

Query: 121 LLGRISLFCWMGSSVCSTLVELGELGRLSTSMKKLEKELKDSD--KHKVYQ 169
            L +I+ +C++GS+ C++++E+ EL RLS SMKKLEKELK  +  K++ YQ
Sbjct: 121 FLSKIAFYCFLGSNTCTSIIEVAELQRLSKSMKKLEKELKHQELLKNEQYQ 171

Involved in peroxisomal proliferation.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q7XU74|PX114_ORYSJ Peroxisomal membrane protein 11-4 OS=Oryza sativa subsp. japonica GN=PEX11-4 PE=2 SV=2

 Score = 54.3 bits (129), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 68/160 (42%), Gaps = 16/160 (10%)

Query: 14  VVLYLNKAEARDKICRAIQYGSKFL-------SDGQPGTAQNVDKSTSLARKVFRLFKFV 66
           +V++L K +  DK+ +  QY SK         S G  G A+N + S  L+RK FR  +F+
Sbjct: 10  LVVFLAKRDGIDKLVKTFQYVSKLAHWAAESSSPGLAGRAKNWETSAGLSRKAFRTGRFL 69

Query: 67  NDLHALISPVPQGTPLPLVLLGKSKNALLSTFLFLDQVVWLGRSGIYKNKERAELLGRIS 126
             L+ L     +  P     L    NA    + F D   WL R G+      A L  R+S
Sbjct: 70  TGLNGL-----RRAPGEFGALAVLANAGEMVYFFFDHFTWLSRVGVLD----AWLARRMS 120

Query: 127 LFCWMGSSVCSTLVELGELGRLSTSMKKLEKELKDSDKHK 166
                G SV        +L  +   +++  K L++  K K
Sbjct: 121 FISAFGESVGYVFFIAMDLIMIRRGLRQERKLLREGGKDK 160

Involved in peroxisomal proliferation.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q01IH3|PX114_ORYSI Peroxisomal membrane protein 11-4 OS=Oryza sativa subsp. indica GN=PEX11-4 PE=2 SV=1

 Score = 54.3 bits (129), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 68/160 (42%), Gaps = 16/160 (10%)

Query: 14  VVLYLNKAEARDKICRAIQYGSKFL-------SDGQPGTAQNVDKSTSLARKVFRLFKFV 66
           +V++L K +  DK+ +  QY SK         S G  G A+N + S  L+RK FR  +F+
Sbjct: 10  LVVFLAKRDGIDKLVKTFQYVSKLAHWAAESSSPGLAGRAKNWETSAGLSRKAFRTGRFL 69

Query: 67  NDLHALISPVPQGTPLPLVLLGKSKNALLSTFLFLDQVVWLGRSGIYKNKERAELLGRIS 126
             L+ L     +  P     L    NA    + F D   WL R G+      A L  R+S
Sbjct: 70  TGLNGL-----RRAPGEFGALAVLANAGEMVYFFFDHFTWLSRVGVLD----AWLARRMS 120

Query: 127 LFCWMGSSVCSTLVELGELGRLSTSMKKLEKELKDSDKHK 166
                G SV        +L  +   +++  K L++  K K
Sbjct: 121 FISAFGESVGYVFFIAMDLIMIRRGLRQERKLLREGGKDK 160

Involved in peroxisomal proliferation.

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q10MN2|PX113_ORYSJ Peroxisomal membrane protein 11-3 OS=Oryza sativa subsp. japonica GN=PEX11-3 PE=2 SV=1

 Score = 49.3 bits (116), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/116 (34%), Positives = 62/116 (53%), Gaps = 14/116 (12%)

Query: 47  QNVDKSTSLARKVFRLFKFVNDLHAL-ISPVPQGTPLPLVLLGKSKNALLSTFLFLDQVV 105
           ++ + S  L+RK FRL KFV +++AL   P P   P  + LL      +   + FL+Q V
Sbjct: 68  KSFESSVGLSRKAFRLGKFVQNVNALRAHPHP---PPAVALLAYGGEGV---YYFLEQFV 121

Query: 106 WLGRSGIYKNKERAELLGRIS-LFCW--MGSSVCSTLVELGELGRLSTSMKKLEKE 158
           WL ++G+      A LL R+  L  W  +   V S  ++L E+G+L +S+K   KE
Sbjct: 122 WLAKAGLLP----AHLLPRLQRLSAWAELLGYVGSITIKLEEIGKLESSVKMRLKE 173

Involved in peroxisomal proliferation.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A2XFQ8|PX113_ORYSI Peroxisomal membrane protein 11-3 OS=Oryza sativa subsp. indica GN=PEX11-3 PE=2 SV=1

 Score = 49.3 bits (116), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/116 (34%), Positives = 62/116 (53%), Gaps = 14/116 (12%)

Query: 47  QNVDKSTSLARKVFRLFKFVNDLHAL-ISPVPQGTPLPLVLLGKSKNALLSTFLFLDQVV 105
           ++ + S  L+RK FRL KFV +++AL   P P   P  + LL      +   + FL+Q V
Sbjct: 68  KSFESSVGLSRKAFRLGKFVQNVNALRAHPHP---PPAVALLAYGGEGV---YYFLEQFV 121

Query: 106 WLGRSGIYKNKERAELLGRIS-LFCW--MGSSVCSTLVELGELGRLSTSMKKLEKE 158
           WL ++G+      A LL R+  L  W  +   V S  ++L E+G+L +S+K   KE
Sbjct: 122 WLAKAGLLP----AHLLPRLQRLSAWAELLGYVGSITIKLEEIGKLESSVKMRLKE 173

Involved in peroxisomal proliferation.

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q10MN3|PX112_ORYSJ Peroxisomal membrane protein 11-2 OS=Oryza sativa subsp. japonica GN=PEX11-2 PE=2 SV=1

 Score = 48.9 bits (115), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/116 (31%), Positives = 60/116 (51%), Gaps = 9/116 (7%)

Query: 47  QNVDKSTSLARKVFRLFKFVNDLHAL----ISPVPQGTPLPLVLLGKSKNALLSTFLFLD 102
           ++ + S  L+RK FRL KFV  ++AL      P P   PL LVLL      +   + FL+
Sbjct: 74  RSFESSVGLSRKAFRLGKFVQSINALRAAAYHPHPHVHPL-LVLLAYGGQGV---YNFLE 129

Query: 103 QVVWLGRSGIYKNKERAELLGRISLFCWMGSSVCSTLVELGELGRLSTSMK-KLEK 157
           Q  WL ++G+   +     L RI ++  + + V S  ++L E+  L   ++ +LE+
Sbjct: 130 QFAWLAKAGLLPARLLPRRLHRIGVWAQLLAHVGSIAIKLEEVAELECGVEARLEE 185

Involved in peroxisomal proliferation.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	176
225453744	235	PREDICTED: peroxisomal membrane protein	0.960	0.719	0.917	2e-86
224063967	235	predicted protein [Populus trichocarpa]	0.960	0.719	0.905	1e-85
255541462	235	peroxisomal biogenesis factor, putative	0.960	0.719	0.905	2e-85
224130140	235	predicted protein [Populus trichocarpa]	0.960	0.719	0.905	7e-85
297842942	235	peroxisomal biogenesis factor 11 family	0.960	0.719	0.887	8e-84
18378887	235	peroxisomal membrane protein 11C [Arabid	0.960	0.719	0.869	5e-83
56368447	235	putative peroxisomal membrane protein PE	0.960	0.719	0.863	5e-82
18406877	236	peroxisomal membrane protein 11D [Arabid	0.937	0.699	0.878	7e-82
297824623	236	peroxisomal biogenesis factor 11 family	0.937	0.699	0.878	2e-81
297788218	244	peroxisomal biogenesis factor 11 family	0.937	0.676	0.878	5e-81

>gi|225453744|ref|XP_002273596.1| PREDICTED: peroxisomal membrane protein 11C isoform 2 [Vitis vinifera] gi|225453746|ref|XP_002273544.1| PREDICTED: peroxisomal membrane protein 11C isoform 1 [Vitis vinifera] gi|296089071|emb|CBI38774.3| unnamed protein product [Vitis vinifera]

 Score =  323 bits (827), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 155/169 (91%), Positives = 162/169 (95%)

Query: 1   MSTLDATRAELALVVLYLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDKSTSLARKVF 60
           MSTLDATRAEL LV+LYLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDKSTSLARKVF
Sbjct: 1   MSTLDATRAELGLVILYLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDKSTSLARKVF 60

Query: 61  RLFKFVNDLHALISPVPQGTPLPLVLLGKSKNALLSTFLFLDQVVWLGRSGIYKNKERAE 120
           RLFKFVNDLHALISP PQGTPLPLVLLGKSKNALLSTFLFLDQ+VWLGRSGIYKNKERAE
Sbjct: 61  RLFKFVNDLHALISPAPQGTPLPLVLLGKSKNALLSTFLFLDQIVWLGRSGIYKNKERAE 120

Query: 121 LLGRISLFCWMGSSVCSTLVELGELGRLSTSMKKLEKELKDSDKHKVYQ 169
            +GRISLFCWMGSS+C+TLVELGELGRLS SMKKLEKELK SDK++  Q
Sbjct: 121 QIGRISLFCWMGSSICATLVELGELGRLSASMKKLEKELKGSDKYQNEQ 169

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224063967|ref|XP_002301325.1| predicted protein [Populus trichocarpa] gi|118484040|gb|ABK93906.1| unknown [Populus trichocarpa] gi|222843051|gb|EEE80598.1| predicted protein [Populus trichocarpa]

 Score =  320 bits (820), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 153/169 (90%), Positives = 161/169 (95%)

Query: 1   MSTLDATRAELALVVLYLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDKSTSLARKVF 60
           MSTLDATRAELAL+VLYLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDKSTSLARKVF
Sbjct: 1   MSTLDATRAELALIVLYLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDKSTSLARKVF 60

Query: 61  RLFKFVNDLHALISPVPQGTPLPLVLLGKSKNALLSTFLFLDQVVWLGRSGIYKNKERAE 120
           RLFKFVNDLH LISPV QGTPLPLVLLGKSKNALLSTFLFLDQ+VWLGRSGIYKNKER +
Sbjct: 61  RLFKFVNDLHGLISPVSQGTPLPLVLLGKSKNALLSTFLFLDQIVWLGRSGIYKNKERVD 120

Query: 121 LLGRISLFCWMGSSVCSTLVELGELGRLSTSMKKLEKELKDSDKHKVYQ 169
           L+GRISLFCWMGSS+C+TLVE+GELGRLS SMKKLEKELKD +KH   Q
Sbjct: 121 LIGRISLFCWMGSSICTTLVEVGELGRLSVSMKKLEKELKDGEKHHNEQ 169

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255541462|ref|XP_002511795.1| peroxisomal biogenesis factor, putative [Ricinus communis] gi|223548975|gb|EEF50464.1| peroxisomal biogenesis factor, putative [Ricinus communis]

 Score =  320 bits (819), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 153/169 (90%), Positives = 164/169 (97%)

Query: 1   MSTLDATRAELALVVLYLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDKSTSLARKVF 60
           MSTLDATRAELAL+VLYLNKAEARDKICRAIQYGSKFLS+GQPGTAQNVDKSTSLARKVF
Sbjct: 1   MSTLDATRAELALLVLYLNKAEARDKICRAIQYGSKFLSNGQPGTAQNVDKSTSLARKVF 60

Query: 61  RLFKFVNDLHALISPVPQGTPLPLVLLGKSKNALLSTFLFLDQVVWLGRSGIYKNKERAE 120
           RL KFVNDLHALISPV QGTPLPLVLLGKSKNALLSTFLFLDQ+VWLGRSGIYKNKERA+
Sbjct: 61  RLLKFVNDLHALISPVTQGTPLPLVLLGKSKNALLSTFLFLDQIVWLGRSGIYKNKERAD 120

Query: 121 LLGRISLFCWMGSSVCSTLVELGELGRLSTSMKKLEKELKDSDKHKVYQ 169
           L+GRISL+CWMGSSVC+TLVE+GELGRLS S+KKLEKELK+SDKH+  Q
Sbjct: 121 LIGRISLYCWMGSSVCTTLVEIGELGRLSASLKKLEKELKNSDKHQNEQ 169

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224130140|ref|XP_002320762.1| predicted protein [Populus trichocarpa] gi|118489542|gb|ABK96573.1| unknown [Populus trichocarpa x Populus deltoides] gi|222861535|gb|EEE99077.1| predicted protein [Populus trichocarpa]

 Score =  318 bits (814), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 153/169 (90%), Positives = 161/169 (95%)

Query: 1   MSTLDATRAELALVVLYLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDKSTSLARKVF 60
           MSTLDATRAELALVVLYLNKAEARDKICRAIQYGSKFLSDGQ GTAQNVDKSTSLARKVF
Sbjct: 1   MSTLDATRAELALVVLYLNKAEARDKICRAIQYGSKFLSDGQAGTAQNVDKSTSLARKVF 60

Query: 61  RLFKFVNDLHALISPVPQGTPLPLVLLGKSKNALLSTFLFLDQVVWLGRSGIYKNKERAE 120
           RLFKFVNDLH LISPVPQGTPLPLVLLGKSKNALLSTFLFLDQ+VWLGRSGIYKNKER E
Sbjct: 61  RLFKFVNDLHGLISPVPQGTPLPLVLLGKSKNALLSTFLFLDQIVWLGRSGIYKNKERVE 120

Query: 121 LLGRISLFCWMGSSVCSTLVELGELGRLSTSMKKLEKELKDSDKHKVYQ 169
           L+GRISLFCWMGSS+C+TLVE+GELGRLS SMKKLEKELK+ +K+   Q
Sbjct: 121 LIGRISLFCWMGSSICTTLVEVGELGRLSASMKKLEKELKEGEKNHNEQ 169

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297842942|ref|XP_002889352.1| peroxisomal biogenesis factor 11 family protein [Arabidopsis lyrata subsp. lyrata] gi|297335194|gb|EFH65611.1| peroxisomal biogenesis factor 11 family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  314 bits (805), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 150/169 (88%), Positives = 162/169 (95%)

Query: 1   MSTLDATRAELALVVLYLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDKSTSLARKVF 60
           MSTL+ TRAEL LVVLYLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDKSTSLARKVF
Sbjct: 1   MSTLETTRAELGLVVLYLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDKSTSLARKVF 60

Query: 61  RLFKFVNDLHALISPVPQGTPLPLVLLGKSKNALLSTFLFLDQVVWLGRSGIYKNKERAE 120
           RLFKFVNDLHALISPVP+GTPLPLVLLGKSKNALLSTFLFLDQ+VWLGR+GIYK+KERAE
Sbjct: 61  RLFKFVNDLHALISPVPKGTPLPLVLLGKSKNALLSTFLFLDQIVWLGRTGIYKDKERAE 120

Query: 121 LLGRISLFCWMGSSVCSTLVELGELGRLSTSMKKLEKELKDSDKHKVYQ 169
           LLGRISLFCWMGSSVC++LVE+GELGRLS S+KKLEKE+ + DKH+  Q
Sbjct: 121 LLGRISLFCWMGSSVCTSLVEVGELGRLSASIKKLEKEIGNKDKHQNEQ 169

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18378887|ref|NP_563636.1| peroxisomal membrane protein 11C [Arabidopsis thaliana] gi|75180079|sp|Q9LQ73.1|PX11C_ARATH RecName: Full=Peroxisomal membrane protein 11C; AltName: Full=Peroxin-11C; Short=AtPEX11c gi|8671852|gb|AAF78415.1|AC009273_21 Contains similarity to an unknown protein F4I18.28 gi|7486466 from Arabidopsis thaliana BAC F4I18 gb|AC004665. ESTs gb|F14309, gb|AI998750, gb|995247, gb|T14224 and gb|AI995247 come from this gene [Arabidopsis thaliana] gi|12083290|gb|AAG48804.1|AF332441_1 unknown protein [Arabidopsis thaliana] gi|17381255|gb|AAL36046.1| At1g01820/T1N6_18 [Arabidopsis thaliana] gi|20453367|gb|AAM19922.1| At1g01820/T1N6_18 [Arabidopsis thaliana] gi|21555588|gb|AAM63892.1| unknown [Arabidopsis thaliana] gi|57157092|dbj|BAD83578.1| unnamed protein product [Arabidopsis thaliana] gi|332189218|gb|AEE27339.1| peroxisomal membrane protein 11C [Arabidopsis thaliana]

 Score =  311 bits (798), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 147/169 (86%), Positives = 162/169 (95%)

Query: 1   MSTLDATRAELALVVLYLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDKSTSLARKVF 60
           MSTL+ TRAEL LVV+YLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDK+TSLARKVF
Sbjct: 1   MSTLETTRAELGLVVVYLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDKNTSLARKVF 60

Query: 61  RLFKFVNDLHALISPVPQGTPLPLVLLGKSKNALLSTFLFLDQVVWLGRSGIYKNKERAE 120
           RLFKFVNDLHALISPVP+GTPLPLVLLGKSKNALLSTFLFLDQ+VWLGR+GIYK+KERAE
Sbjct: 61  RLFKFVNDLHALISPVPKGTPLPLVLLGKSKNALLSTFLFLDQIVWLGRTGIYKDKERAE 120

Query: 121 LLGRISLFCWMGSSVCSTLVELGELGRLSTSMKKLEKELKDSDKHKVYQ 169
           +LGRISLFCWMGSSVC++LVE+GELGRLS S+KKLEKE+ + DKH+  Q
Sbjct: 121 ILGRISLFCWMGSSVCTSLVEVGELGRLSASIKKLEKEIGNKDKHQNEQ 169

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|56368447|emb|CAD58675.1| putative peroxisomal membrane protein PEX11-1 [Arabidopsis thaliana]

 Score =  308 bits (789), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 146/169 (86%), Positives = 161/169 (95%)

Query: 1   MSTLDATRAELALVVLYLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDKSTSLARKVF 60
           MSTL+ TRAEL LVV+YLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDK+TSLARKVF
Sbjct: 1   MSTLETTRAELGLVVVYLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDKNTSLARKVF 60

Query: 61  RLFKFVNDLHALISPVPQGTPLPLVLLGKSKNALLSTFLFLDQVVWLGRSGIYKNKERAE 120
           RLFKFVNDLHALISPVP+GTPLPLVLLGKSKNALLSTFLFLDQ+VWLGR+GIYK+KERAE
Sbjct: 61  RLFKFVNDLHALISPVPKGTPLPLVLLGKSKNALLSTFLFLDQIVWLGRTGIYKDKERAE 120

Query: 121 LLGRISLFCWMGSSVCSTLVELGELGRLSTSMKKLEKELKDSDKHKVYQ 169
           +LG ISLFCWMGSSVC++LVE+GELGRLS S+KKLEKE+ + DKH+  Q
Sbjct: 121 ILGLISLFCWMGSSVCTSLVEVGELGRLSASIKKLEKEIGNKDKHQNEQ 169

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18406877|ref|NP_566055.1| peroxisomal membrane protein 11D [Arabidopsis thaliana] gi|30690116|ref|NP_850441.1| peroxisomal membrane protein 11D [Arabidopsis thaliana] gi|79324919|ref|NP_001031544.1| peroxisomal membrane protein 11D [Arabidopsis thaliana] gi|75099949|sp|O80845.2|PX11D_ARATH RecName: Full=Peroxisomal membrane protein 11D; AltName: Full=Peroxin-11D; Short=AtPEX11d gi|15450880|gb|AAK96711.1| Unknown protein [Arabidopsis thaliana] gi|20197204|gb|AAC28551.2| expressed protein [Arabidopsis thaliana] gi|21537163|gb|AAM61504.1| unknown [Arabidopsis thaliana] gi|330255500|gb|AEC10594.1| peroxisomal membrane protein 11D [Arabidopsis thaliana] gi|330255501|gb|AEC10595.1| peroxisomal membrane protein 11D [Arabidopsis thaliana] gi|330255502|gb|AEC10596.1| peroxisomal membrane protein 11D [Arabidopsis thaliana]

 Score =  308 bits (788), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 145/165 (87%), Positives = 160/165 (96%)

Query: 2   STLDATRAELALVVLYLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDKSTSLARKVFR 61
           +TLD +RAELALVV+YLNKAEARDK+CRAIQYGSKFLS GQPGTAQNVDKSTSLARKVFR
Sbjct: 3   TTLDVSRAELALVVMYLNKAEARDKLCRAIQYGSKFLSGGQPGTAQNVDKSTSLARKVFR 62

Query: 62  LFKFVNDLHALISPVPQGTPLPLVLLGKSKNALLSTFLFLDQVVWLGRSGIYKNKERAEL 121
           LFKFVNDLH LISPVP+GTPLPLVLLGKSKNALLSTFLFLDQ+VWLGRSGIYKNKERAEL
Sbjct: 63  LFKFVNDLHGLISPVPKGTPLPLVLLGKSKNALLSTFLFLDQIVWLGRSGIYKNKERAEL 122

Query: 122 LGRISLFCWMGSSVCSTLVELGELGRLSTSMKKLEKELKDSDKHK 166
           LGRISLFCWMGSSVC+TLVE+GE+GRLS+SMKK+EK LK+ +K++
Sbjct: 123 LGRISLFCWMGSSVCTTLVEVGEMGRLSSSMKKIEKGLKNGNKYQ 167

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297824623|ref|XP_002880194.1| peroxisomal biogenesis factor 11 family protein [Arabidopsis lyrata subsp. lyrata] gi|297326033|gb|EFH56453.1| peroxisomal biogenesis factor 11 family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  306 bits (785), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 145/165 (87%), Positives = 159/165 (96%)

Query: 2   STLDATRAELALVVLYLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDKSTSLARKVFR 61
           +TLD +RAELALVV+YLNKAEARDK+CRAIQYGSKFLS GQPGTAQNVDKSTSLARKVFR
Sbjct: 3   TTLDVSRAELALVVMYLNKAEARDKLCRAIQYGSKFLSGGQPGTAQNVDKSTSLARKVFR 62

Query: 62  LFKFVNDLHALISPVPQGTPLPLVLLGKSKNALLSTFLFLDQVVWLGRSGIYKNKERAEL 121
           LFKFVNDLH LISPVP+GTPLPLVLLGKSKNALLSTFLFLDQ+VWLGRSGIYKNKERAEL
Sbjct: 63  LFKFVNDLHGLISPVPKGTPLPLVLLGKSKNALLSTFLFLDQIVWLGRSGIYKNKERAEL 122

Query: 122 LGRISLFCWMGSSVCSTLVELGELGRLSTSMKKLEKELKDSDKHK 166
           LGRISLFCWMGSSVC+TLVE+GE+GRLS+SMKK+EK LK  +K++
Sbjct: 123 LGRISLFCWMGSSVCTTLVEVGEIGRLSSSMKKIEKGLKHGNKYQ 167

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297788218|ref|XP_002862253.1| peroxisomal biogenesis factor 11 family protein [Arabidopsis lyrata subsp. lyrata] gi|297307567|gb|EFH38511.1| peroxisomal biogenesis factor 11 family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  305 bits (781), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 145/165 (87%), Positives = 159/165 (96%)

Query: 2   STLDATRAELALVVLYLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDKSTSLARKVFR 61
           +TLD +RAELALVV+YLNKAEARDK+CRAIQYGSKFLS GQPGTAQNVDKSTSLARKVFR
Sbjct: 3   TTLDVSRAELALVVMYLNKAEARDKLCRAIQYGSKFLSGGQPGTAQNVDKSTSLARKVFR 62

Query: 62  LFKFVNDLHALISPVPQGTPLPLVLLGKSKNALLSTFLFLDQVVWLGRSGIYKNKERAEL 121
           LFKFVNDLH LISPVP+GTPLPLVLLGKSKNALLSTFLFLDQ+VWLGRSGIYKNKERAEL
Sbjct: 63  LFKFVNDLHGLISPVPKGTPLPLVLLGKSKNALLSTFLFLDQIVWLGRSGIYKNKERAEL 122

Query: 122 LGRISLFCWMGSSVCSTLVELGELGRLSTSMKKLEKELKDSDKHK 166
           LGRISLFCWMGSSVC+TLVE+GE+GRLS+SMKK+EK LK  +K++
Sbjct: 123 LGRISLFCWMGSSVCTTLVEVGEIGRLSSSMKKIEKGLKHGNKYQ 167

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	176
TAIR|locus:2050694	236	PEX11D "AT2G45740" [Arabidopsi	0.857	0.639	0.913	9.9e-71
TAIR|locus:2198150	235	PEX11C "AT1G01820" [Arabidopsi	0.863	0.646	0.901	2.6e-70
TAIR|locus:2101012	231	PEX11E "peroxin 11E" [Arabidop	0.863	0.658	0.888	3.8e-69
TAIR|locus:2202430	248	PEX11A "AT1G47750" [Arabidopsi	0.732	0.520	0.281	1.3e-07

TAIR|locus:2050694 PEX11D "AT2G45740" [Arabidopsis thaliana (taxid:3702)]

 Score = 716 (257.1 bits), Expect = 9.9e-71, P = 9.9e-71
 Identities = 138/151 (91%), Positives = 148/151 (98%)

Query:     2 STLDATRAELALVVLYLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDKSTSLARKVFR 61
             +TLD +RAELALVV+YLNKAEARDK+CRAIQYGSKFLS GQPGTAQNVDKSTSLARKVFR
Sbjct:     3 TTLDVSRAELALVVMYLNKAEARDKLCRAIQYGSKFLSGGQPGTAQNVDKSTSLARKVFR 62

Query:    62 LFKFVNDLHALISPVPQGTPLPLVLLGKSKNALLSTFLFLDQVVWLGRSGIYKNKERAEL 121
             LFKFVNDLH LISPVP+GTPLPLVLLGKSKNALLSTFLFLDQ+VWLGRSGIYKNKERAEL
Sbjct:    63 LFKFVNDLHGLISPVPKGTPLPLVLLGKSKNALLSTFLFLDQIVWLGRSGIYKNKERAEL 122

Query:   122 LGRISLFCWMGSSVCSTLVELGELGRLSTSM 152
             LGRISLFCWMGSSVC+TLVE+GE+GRLS+SM
Sbjct:   123 LGRISLFCWMGSSVCTTLVEVGEMGRLSSSM 153

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0005778 "peroxisomal membrane" evidence=ISS

GO:0005779 "integral to peroxisomal membrane" evidence=IEA;IDA

GO:0016559 "peroxisome fission" evidence=IEA;ISS;IMP

GO:0009507 "chloroplast" evidence=IDA

GO:0007031 "peroxisome organization" evidence=IMP

GO:0005777 "peroxisome" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0042802 "identical protein binding" evidence=IDA

TAIR|locus:2198150 PEX11C "AT1G01820" [Arabidopsis thaliana (taxid:3702)]

 Score = 712 (255.7 bits), Expect = 2.6e-70, P = 2.6e-70
 Identities = 137/152 (90%), Positives = 149/152 (98%)

Query:     1 MSTLDATRAELALVVLYLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDKSTSLARKVF 60
             MSTL+ TRAEL LVV+YLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDK+TSLARKVF
Sbjct:     1 MSTLETTRAELGLVVVYLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDKNTSLARKVF 60

Query:    61 RLFKFVNDLHALISPVPQGTPLPLVLLGKSKNALLSTFLFLDQVVWLGRSGIYKNKERAE 120
             RLFKFVNDLHALISPVP+GTPLPLVLLGKSKNALLSTFLFLDQ+VWLGR+GIYK+KERAE
Sbjct:    61 RLFKFVNDLHALISPVPKGTPLPLVLLGKSKNALLSTFLFLDQIVWLGRTGIYKDKERAE 120

Query:   121 LLGRISLFCWMGSSVCSTLVELGELGRLSTSM 152
             +LGRISLFCWMGSSVC++LVE+GELGRLS S+
Sbjct:   121 ILGRISLFCWMGSSVCTSLVEVGELGRLSASI 152

GO:0003674 "molecular_function" evidence=ND

GO:0005778 "peroxisomal membrane" evidence=ISS

GO:0005779 "integral to peroxisomal membrane" evidence=IEA;IDA

GO:0016559 "peroxisome fission" evidence=IEA;ISS;IMP

GO:0007031 "peroxisome organization" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005777 "peroxisome" evidence=IDA

GO:0042802 "identical protein binding" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

TAIR|locus:2101012 PEX11E "peroxin 11E" [Arabidopsis thaliana (taxid:3702)]

 Score = 701 (251.8 bits), Expect = 3.8e-69, P = 3.8e-69
 Identities = 135/152 (88%), Positives = 145/152 (95%)

Query:     1 MSTLDATRAELALVVLYLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDKSTSLARKVF 60
             M+TLD TRAELAL+VLYLNKAEARDKICRAIQYGSKFLS GQPGTAQ VDK+TSLARKVF
Sbjct:     1 MTTLDLTRAELALIVLYLNKAEARDKICRAIQYGSKFLSGGQPGTAQTVDKNTSLARKVF 60

Query:    61 RLFKFVNDLHALISPVPQGTPLPLVLLGKSKNALLSTFLFLDQVVWLGRSGIYKNKERAE 120
             RLFKFVND H LISPVP+GTPLPLVLLGKSKNALLSTFLFLDQ+VWLGRSGIYKNKER E
Sbjct:    61 RLFKFVNDFHGLISPVPKGTPLPLVLLGKSKNALLSTFLFLDQIVWLGRSGIYKNKERTE 120

Query:   121 LLGRISLFCWMGSSVCSTLVELGELGRLSTSM 152
             LLGRISLFCW+GSSVC++ VE+GELGRLS+SM
Sbjct:   121 LLGRISLFCWLGSSVCTSAVEIGELGRLSSSM 152

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0005778 "peroxisomal membrane" evidence=ISS

GO:0005779 "integral to peroxisomal membrane" evidence=IEA;IDA

GO:0016559 "peroxisome fission" evidence=IEA;ISS;IMP

GO:0007031 "peroxisome organization" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005777 "peroxisome" evidence=IDA

GO:0042802 "identical protein binding" evidence=IDA

GO:0007623 "circadian rhythm" evidence=IEP

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0009062 "fatty acid catabolic process" evidence=RCA

GO:0009686 "gibberellin biosynthetic process" evidence=RCA

GO:0009740 "gibberellic acid mediated signaling pathway" evidence=RCA

TAIR|locus:2202430 PEX11A "AT1G47750" [Arabidopsis thaliana (taxid:3702)]

 Score = 124 (48.7 bits), Expect = 1.3e-07, P = 1.3e-07
 Identities = 40/142 (28%), Positives = 74/142 (52%)

Query:    17 YLNKAEARDKICRAIQYGSKFL--SDGQPGTA------QNVDKSTSLARKVFRLFKFVND 68
             YL+K +  DK+ +  +Y +K +  S   P T       ++ + S  ++RK FRL KFV D
Sbjct:    24 YLSKRDGVDKLLKISRYATKIILASSLIPETRSIIPRLKSFESSVGVSRKAFRLGKFVQD 83

Query:    69 LHALISPV-PQGTPLPLVLLGKSKNALLSTFLFLDQVVWLGRSGIYKNKERAELLGRISL 127
             ++AL S        L L+++      L   + F++Q +WL +SG+   K  ++ L +IS 
Sbjct:    84 INALRSSRWDSNHELVLLIIAYGGEGL---YYFVEQFIWLTKSGLIDAKH-SKWLQKISA 139

Query:   128 FCWMGSSVCSTLVELGELGRLS 149
             +  +   V S  +++ +L +L+
Sbjct:   140 WAELVGYVGSVSIKIRDLRKLN 161


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.135   0.390    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      176       162   0.00079  107 3  11 22  0.48    31
                                                     30  0.44    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  559 (59 KB)
  Total size of DFA:  123 KB (2079 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.05u 0.12s 15.17t   Elapsed:  00:00:01
  Total cpu time:  15.05u 0.12s 15.17t   Elapsed:  00:00:01
  Start:  Sat May 11 04:00:51 2013   End:  Sat May 11 04:00:52 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0005778 "peroxisomal membrane" evidence=ISS

GO:0005779 "integral to peroxisomal membrane" evidence=IEA;IDA

GO:0016559 "peroxisome fission" evidence=IEA;ISS;IMP

GO:0007031 "peroxisome organization" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005777 "peroxisome" evidence=IDA

GO:0042802 "identical protein binding" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q10SM7	PX111_ORYSJ	No assigned EC number	0.8012	0.9431	0.7004	yes	no
Q9LQ73	PX11C_ARATH	No assigned EC number	0.8698	0.9602	0.7191	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00021430 SubName- Full=Putative uncharacterized protein; (235 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	176
pfam05648	225	pfam05648, PEX11, Peroxisomal biogenesis factor 11	4e-35

>gnl|CDD|218675 pfam05648, PEX11, Peroxisomal biogenesis factor 11 (PEX11)

 Score =  121 bits (307), Expect = 4e-35
 Identities = 50/166 (30%), Positives = 79/166 (47%), Gaps = 11/166 (6%)

Query: 11  LALVVLYLNKAEARDKICRAIQYGSKFL---------SDGQPGTAQNVDKSTSLARKVFR 61
           L  +V +L+    RDK+ R +QY S+ L         S       +N++   SL+RK+ R
Sbjct: 1   LDHLVRFLDSTVGRDKLLRTLQYASRLLAWYLYRKGSSPELIARLKNLESQFSLSRKLLR 60

Query: 62  LFKFVNDLHALISPVPQGTPLPLV-LLGKSKNALLSTFLFLDQVVWLGRSGIYKNKERAE 120
           L KF+  L A         P P++ LL   +N   + +L  D ++WL + G+ K K  A+
Sbjct: 61  LGKFLEHLQAAAKYYDNKLPDPVLRLLAVLRNLGYALYLPFDHILWLAKIGLLKVKN-AK 119

Query: 121 LLGRISLFCWMGSSVCSTLVELGELGRLSTSMKKLEKELKDSDKHK 166
              RIS   W+   + S + +L EL +L    KKL+KE     +  
Sbjct: 120 RWSRISSRFWLFGLLLSLVRDLRELRQLQEKEKKLKKEKDSEGEST 165

This family consists of several peroxisomal biogenesis factor 11 (PEX11) proteins from several eukaryotic species. The PEX11 peroxisomal membrane proteins promote peroxisome division in multiple eukaryotes. Length = 225

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	176
PF05648	223	PEX11: Peroxisomal biogenesis factor 11 (PEX11)	100.0
KOG4186	233	consensus Peroxisomal biogenesis protein (peroxin)	99.97

>PF05648 PEX11: Peroxisomal biogenesis factor 11 (PEX11)

Probab=100.00  E-value=1.8e-33  Score=226.08  Aligned_cols=148  Identities=32%  Similarity=0.445  Sum_probs=131.3

Q ss_pred             HHHHHHHhcccchHHHHHHHHHHHHHHhhcC------Cc---hhHHhHHhhhhhhHHHHHhhcchhHHHHhhccCCCCCC
Q 030513           11 LALVVLYLNKAEARDKICRAIQYGSKFLSDG------QP---GTAQNVDKSTSLARKVFRLFKFVNDLHALISPVPQGTP   81 (176)
Q Consensus        11 l~~~v~~l~t~~GRDK~lR~lQY~skll~~~------~~---~~~~~l~~~ls~aRk~~Rl~k~l~~~~~~~~~~~~~~~   81 (176)
                      |+++++|+++++||||++|++||+++++++.      .+   ...+++++++|++||+||+||++++++.+.+...++++
T Consensus         1 l~~~~~~l~~~~GrDK~~r~~qy~~~~~~~~~~~~~~~~~~~~~~~~l~~~ls~aRk~~Rl~k~l~~l~~~~~~~~~~~~   80 (223)
T PF05648_consen    1 LDHFVRFLSSTDGRDKLLRLLQYSSKFLAWYLARRGPSKELSKRLKALSSQLSDARKLFRLGKFLPMLQAARKYIKKKPS   80 (223)
T ss_pred             CHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHccCCChHHHHHHHHHHHHhhhHHHHHHHHccHHHHHHHHHhhccCCc
Confidence            5799999999999999999999999999762      12   23479999999999999999999999999988664445


Q ss_pred             chhHH-HHhhhhhHHHHHHHHHHHHHHHHhCCCcCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 030513           82 LPLVL-LGKSKNALLSTFLFLDQVVWLGRSGIYKNKERAELLGRISLFCWMGSSVCSTLVELGELGRLSTSMKKLEKEL  159 (176)
Q Consensus        82 ~~~l~-l~~~~~~~~~~Y~~~D~i~wl~~~gl~~~~~~~~~~~~~s~~fW~~~l~~sii~~l~~L~~l~~~~~~l~~~~  159 (176)
                      ++++. +..++++++++|+++||++|++++|+++.+. .++|.++|++||++++++++++++++++.+.+++++.+++.
T Consensus        81 d~~~~~l~~l~~~~~~~y~~~D~~~wl~~~gl~~~~~-~~~~~~~s~~~W~~~l~~~l~~~~~~l~~~~~~~~~~~~~~  158 (223)
T PF05648_consen   81 DQVLRILEILSNLFMFLYYLLDNLVWLSKLGLLPNKS-KKKWSRWSNRFWFASLVLSLVRDLRELRRLRQKERSLKKQL  158 (223)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            67765 7778899999999999999999999999863 44999999999999999999999999999999988877765

>KOG4186 consensus Peroxisomal biogenesis protein (peroxin) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=4e-30  Score=208.71  Aligned_cols=136  Identities=41%  Similarity=0.557  Sum_probs=119.6

Q ss_pred             HHHHHHHhcccchHHHHHHHHHHHHHHhhc----CCchhH---HhHHhhhhhhHHHHHhhcchhHHHHhhcc--CCCCCC
Q 030513           11 LALVVLYLNKAEARDKICRAIQYGSKFLSD----GQPGTA---QNVDKSTSLARKVFRLFKFVNDLHALISP--VPQGTP   81 (176)
Q Consensus        11 l~~~v~~l~t~~GRDK~lR~lQY~skll~~----~~~~~~---~~l~~~ls~aRk~~Rl~k~l~~~~~~~~~--~~~~~~   81 (176)
                      +|++++|+++++||||++|.+||+|+++++    ++|+.+   +++++++|.+||+||+||++++++.+.++  .+.+++
T Consensus         1 ~d~lv~~ln~~~gRDKl~RalQY~akll~~~l~~~~p~~a~~~~kles~~S~~RK~~Rl~k~l~~~~~~~~~~~~~~~~~   80 (233)
T KOG4186|consen    1 LDHLVRFLNSAAGRDKLCRALQYVAKLLSWHLEAGSPELAKRLKKLESQLSLARKVLRLGKDLNMFQAALQYGLVPLGTD   80 (233)
T ss_pred             CcHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhccCChHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcccCCCCCc
Confidence            478999999999999999999999999999    778776   57788999999999999999999999998  343332


Q ss_pred             chhHHHHhhhhhHHHHHHHHHHHHHHHHhCCCcCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030513           82 LPLVLLGKSKNALLSTFLFLDQVVWLGRSGIYKNKERAELLGRISLFCWMGSSVCSTLVELGELGRL  148 (176)
Q Consensus        82 ~~~l~l~~~~~~~~~~Y~~~D~i~wl~~~gl~~~~~~~~~~~~~s~~fW~~~l~~sii~~l~~L~~l  148 (176)
                      .++..+++.+|+.+++|+++||+.|++++|+++.+  .++|...+..+|.+++.+++.++++.+..+
T Consensus        81 ~~lr~~~~l~n~~~~~Y~~~D~v~Wl~~~gi~~~~--~~~~~~~~~~~w~~sl~l~~~r~~~~~~~~  145 (233)
T KOG4186|consen   81 NVLRLLGVLKNLAFALYLFLDHVLWLARTGIIPVK--SERWKISRISLWLLSLGLNLCRDMYEVFEL  145 (233)
T ss_pred             chhhHHHHHhHHHHHHHHHHHHHHHHHHhCCcccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22334778899999999999999999999999987  489999999999999999999999995444

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	176
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	1e-04

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 39.5 bits (91), Expect = 1e-04
 Identities = 8/24 (33%), Positives = 13/24 (54%), Gaps = 7/24 (29%)

Query: 151 SMKKLEKELKDSDKHKVYQPNVSA 174
           ++KKL+  L      K+Y  + SA
Sbjct: 21  ALKKLQASL------KLYADD-SA 37

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00