Citrus Sinensis ID: 030634

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170----
Protein Sequence
MEFSQSDFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLEVSTKAPELHMELHKHGINQQTLGGGSSASSAQVNFCICVHQMKMAF
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHcccHHHHHHHHcHHHHHHccccccccHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccccEEEEEccHHHcHccccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcHHHHHHHHHHcccHHHccccccccccccEEEEEHEHEHccc
Coil and Loop (DISEMBL)
mefsqsdfDRLLLSEHNRKTaeanyakdpldadnlTRWGEALLELsqfesvsdSKKIINEAISKFEEalvidpakhytlwslgnahtscgfLTADLseakgdfdkaSECFQravdeeptnelYQKSLEVSTKAPELHMELHKhginqqtlgggssassAQVNFCICVHQMKMAF
Flexible Loop (DISEMBL)
mefsqsdfDRLLLSEHNRKtaeanyakdpldaDNLTRWGEALLElsqfesvsdSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVdeeptnelyqKSLEVSTKAPELHMELHKHGINQQTLGGGSSASSAQVNFCICVHQMKMAF
Low Complexity Region (SEG)
MEFSQSDFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLEVSTKAPELHMELHKHGINQQTLGGGSSASSAQVNFCICVHQMKMAF
Disordered region (IsUnstruct)
********************************DNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSE*************************************************************QVNFCICVHQ*****
Disordered Region (DISOPRED)
******D*DRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELS**********IINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLEVSTKAPELHME************************CICVHQMKMAF
Disordered Region (DISEMBL)
MEFSQSDFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLEVSTKAPELHMELHKHGINQQT*********AQVNFCICVHQMKMAF
Disordered Region (DISPRO)
**FSQSDFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLEVSTKAPELHMELHKHGIN*************QVNFCICVHQMKMAF
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEFSQSDFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLEVSTKAPELHMELHKHGINQQTLGGGSSASSAQVNFCICVHQMKMAF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	174	2.2.26 [Sep-21-2011]
P92792	204	Mitochondrial import rece	N/A	no	0.850	0.725	0.641	8e-53
P82874	202	Mitochondrial import rece	yes	no	0.850	0.732	0.574	2e-45
P82873	210	Mitochondrial import rece	no	no	0.862	0.714	0.553	2e-44
P82805	187	Mitochondrial import rece	no	no	0.752	0.700	0.593	1e-39
A2WYG9	201	Probable mitochondrial im	N/A	no	0.804	0.696	0.535	2e-36
Q5JJI4	202	Probable mitochondrial im	yes	no	0.804	0.693	0.535	3e-36
P82872	188	Mitochondrial import rece	no	no	0.827	0.765	0.517	5e-34

>sp|P92792|TOM20_SOLTU Mitochondrial import receptor subunit TOM20 OS=Solanum tuberosum GN=TOM20 PE=1 SV=1

 Score =  206 bits (523), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 95/148 (64%), Positives = 121/148 (81%)

Query: 5   QSDFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISK 64
           QS+FDRLL  EH RK+AE  YA++PLDADNLTRWG ALLELSQF+ V++SK++I++A SK
Sbjct: 4   QSEFDRLLFFEHARKSAETTYAQNPLDADNLTRWGGALLELSQFQPVAESKQMISDATSK 63

Query: 65  FEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQ 124
            EEAL ++P KH  LW LGNAHTS  FLT D+ EAK  F+KA++CFQ+A D +P+N+LY+
Sbjct: 64  LEEALTVNPEKHDALWCLGNAHTSHVFLTPDMDEAKVYFEKATQCFQQAFDADPSNDLYR 123

Query: 125 KSLEVSTKAPELHMELHKHGINQQTLGG 152
           KSLEV+ KAPELHME+H+HG  QQT+  
Sbjct: 124 KSLEVTAKAPELHMEIHRHGPMQQTMAA 151

Central component of the receptor complex responsible for the recognition and translocation of cytosolically synthesized mitochondrial preproteins. Together with TOM22 functions as the transit peptide receptor at the surface of the mitochondrion outer membrane and facilitates the movement of preproteins into the translocation pore.
Solanum tuberosum (taxid: 4113)

>sp|P82874|TO203_ARATH Mitochondrial import receptor subunit TOM20-3 OS=Arabidopsis thaliana GN=TOM20-3 PE=1 SV=1

 Score =  181 bits (459), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 85/148 (57%), Positives = 113/148 (76%)

Query: 4   SQSDFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAIS 63
           ++++FDR+LL E  R+ AE  Y  +PLDADNLTRWG  LLELSQF S+SD+K++I EAI+
Sbjct: 3   TETEFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAIT 62

Query: 64  KFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELY 123
           KFEEAL+IDP K   +W +GNA+TS  FLT D +EAK +FD A++ FQ+AVDE+P N  Y
Sbjct: 63  KFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHY 122

Query: 124 QKSLEVSTKAPELHMELHKHGINQQTLG 151
            KSLE++ KAP+LH E +K G+  Q +G
Sbjct: 123 LKSLEMTAKAPQLHAEAYKQGLGSQPMG 150

Central component of the receptor complex responsible for the recognition and translocation of cytosolically synthesized mitochondrial preproteins. Together with TOM22 functions as the transit peptide receptor at the surface of the mitochondrion outer membrane and facilitates the movement of preproteins into the translocation pore.

Arabidopsis thaliana (taxid: 3702)

>sp|P82873|TO202_ARATH Mitochondrial import receptor subunit TOM20-2 OS=Arabidopsis thaliana GN=TOM20-2 PE=1 SV=2

 Score =  178 bits (451), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 83/150 (55%), Positives = 110/150 (73%)

Query: 1   MEFSQSDFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINE 60
           MEFS +DF+RL++ EH RK +EA Y  DPLD++NL +WG ALLELSQF+ + ++K ++N+
Sbjct: 1   MEFSTADFERLIMFEHARKNSEAQYKNDPLDSENLLKWGGALLELSQFQPIPEAKLMLND 60

Query: 61  AISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN 120
           AISK EEAL I+P KH  LW + NA+T+  F   D  EAK  FDKA+E FQRA +E+P N
Sbjct: 61  AISKLEEALTINPGKHQALWCIANAYTAHAFYVHDPEEAKEHFDKATEYFQRAENEDPGN 120

Query: 121 ELYQKSLEVSTKAPELHMELHKHGINQQTL 150
           + Y+KSL+ S KAPELHM+    G+ QQ L
Sbjct: 121 DTYRKSLDSSLKAPELHMQFMNQGMGQQIL 150

Central component of the receptor complex responsible for the recognition and translocation of cytosolically synthesized mitochondrial preproteins. Together with TOM22 functions as the transit peptide receptor at the surface of the mitochondrion outer membrane and facilitates the movement of preproteins into the translocation pore.

Arabidopsis thaliana (taxid: 3702)

>sp|P82805|TO204_ARATH Mitochondrial import receptor subunit TOM20-4 OS=Arabidopsis thaliana GN=TOM20-4 PE=1 SV=1

 Score =  162 bits (409), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 79/133 (59%), Positives = 105/133 (78%), Gaps = 2/133 (1%)

Query: 5   QSDFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISK 64
           Q++ +RL++ EH RK AEA Y K+PLDA+NLTRW  ALLELSQF++  + K++I EAI K
Sbjct: 4   QNENERLMVFEHARKVAEATYVKNPLDAENLTRWAGALLELSQFQT--EPKQMILEAILK 61

Query: 65  FEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQ 124
             EALVIDP KH  LW +GNAH S GFL++D +EA  +F+KAS+ FQ AV+E+P +ELY+
Sbjct: 62  LGEALVIDPKKHDALWLIGNAHLSFGFLSSDQTEASDNFEKASQFFQLAVEEQPESELYR 121

Query: 125 KSLEVSTKAPELH 137
           KSL +++KAPELH
Sbjct: 122 KSLTLASKAPELH 134

Central component of the receptor complex responsible for the recognition and translocation of cytosolically synthesized mitochondrial preproteins. Together with TOM22 functions as the transit peptide receptor at the surface of the mitochondrion outer membrane and facilitates the movement of preproteins into the translocation pore.

Arabidopsis thaliana (taxid: 3702)

>sp|A2WYG9|TOM20_ORYSI Probable mitochondrial import receptor subunit TOM20 OS=Oryza sativa subsp. indica GN=TOM20 PE=2 SV=2

 Score =  151 bits (381), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 75/140 (53%), Positives = 100/140 (71%)

Query: 4   SQSDFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAIS 63
           + SD +R+   +   + A+  Y ++P DADNLTRWG ALLELSQ  +  +S K + +A S
Sbjct: 5   AMSDPERMFFFDLACQNAKVTYEQNPHDADNLTRWGGALLELSQMRNGPESLKCLEDAES 64

Query: 64  KFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELY 123
           K EEAL IDP K   LW LGNA TS GF T+D  +A   F+KA++CFQ+AVD EP N+LY
Sbjct: 65  KLEEALKIDPMKADALWCLGNAQTSHGFFTSDTVKANEFFEKATQCFQKAVDVEPANDLY 124

Query: 124 QKSLEVSTKAPELHMELHKH 143
           +KSL++S+KAPELHME+H+ 
Sbjct: 125 RKSLDLSSKAPELHMEIHRQ 144

Central component of the receptor complex responsible for the recognition and translocation of cytosolically synthesized mitochondrial preproteins. Together with TOM22 functions as the transit peptide receptor at the surface of the mitochondrion outer membrane and facilitates the movement of preproteins into the translocation pore.

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q5JJI4|TOM20_ORYSJ Probable mitochondrial import receptor subunit TOM20 OS=Oryza sativa subsp. japonica GN=TOM20 PE=2 SV=1

 Score =  151 bits (381), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 75/140 (53%), Positives = 100/140 (71%)

Query: 4   SQSDFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAIS 63
           + SD +R+   +   + A+  Y ++P DADNLTRWG ALLELSQ  +  +S K + +A S
Sbjct: 5   AMSDPERMFFFDLACQNAKVTYEQNPHDADNLTRWGGALLELSQMRNGPESLKCLEDAES 64

Query: 64  KFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELY 123
           K EEAL IDP K   LW LGNA TS GF T+D  +A   F+KA++CFQ+AVD EP N+LY
Sbjct: 65  KLEEALKIDPMKADALWCLGNAQTSHGFFTSDTVKANEFFEKATQCFQKAVDVEPANDLY 124

Query: 124 QKSLEVSTKAPELHMELHKH 143
           +KSL++S+KAPELHME+H+ 
Sbjct: 125 RKSLDLSSKAPELHMEIHRQ 144

Central component of the receptor complex responsible for the recognition and translocation of cytosolically synthesized mitochondrial preproteins. Together with TOM22 functions as the transit peptide receptor at the surface of the mitochondrion outer membrane and facilitates the movement of preproteins into the translocation pore.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P82872|TO201_ARATH Mitochondrial import receptor subunit TOM20-1 OS=Arabidopsis thaliana GN=TOM20-1 PE=1 SV=1

 Score =  143 bits (361), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 75/145 (51%), Positives = 99/145 (68%), Gaps = 1/145 (0%)

Query: 8   FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEE 67
            D+L   E  RK AE  Y  +P DADNL RWGEALLELSQF++V DS K+I +AISK E+
Sbjct: 1   MDKLNFFEEIRKDAEETYKLNPEDADNLMRWGEALLELSQFQNVIDSLKMIQDAISKLED 60

Query: 68  ALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSL 127
           A++IDP KH  +W LGNA+TS   LT D ++A+ +F  A   F  AV ++P N++Y KSL
Sbjct: 61  AILIDPMKHDAVWCLGNAYTSYARLTPDDTQARLNFGLAYLFFGIAVAQQPDNQVYHKSL 120

Query: 128 EVSTKAPELHMELHKHGINQQTLGG 152
           E++ KAP+LH   HK+ +    LGG
Sbjct: 121 EMADKAPQLHTGFHKNRL-LSLLGG 144

Central component of the receptor complex responsible for the recognition and translocation of cytosolically synthesized mitochondrial preproteins. Together with TOM22 functions as the transit peptide receptor at the surface of the mitochondrion outer membrane and facilitates the movement of preproteins into the translocation pore.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	174
224072604	200	predicted protein [Populus trichocarpa]	0.902	0.785	0.702	6e-58
449450365	204	PREDICTED: mitochondrial import receptor	0.908	0.774	0.677	1e-56
224057709	200	predicted protein [Populus trichocarpa]	0.908	0.79	0.666	1e-56
225451445	201	PREDICTED: mitochondrial import receptor	0.850	0.736	0.709	1e-54
255547728	206	Mitochondrial import receptor subunit TO	0.931	0.786	0.604	3e-54
255536895	205	Mitochondrial import receptor subunit TO	0.885	0.751	0.649	4e-54
388513623	207	unknown [Lotus japonicus]	0.908	0.763	0.662	9e-54
356566216	201	PREDICTED: mitochondrial import receptor	0.913	0.791	0.637	1e-53
449494436	204	PREDICTED: mitochondrial import receptor	0.821	0.700	0.706	1e-52
351722735	201	uncharacterized protein LOC100527313 [Gl	0.896	0.776	0.636	4e-52

>gi|224072604|ref|XP_002303802.1| predicted protein [Populus trichocarpa] gi|222841234|gb|EEE78781.1| predicted protein [Populus trichocarpa]

 Score =  228 bits (582), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 111/158 (70%), Positives = 134/158 (84%), Gaps = 1/158 (0%)

Query: 1   MEFSQSDFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINE 60
           MEFSQ DFDRLL  EH RK+AEA YAKDPLDADNLT+WGEALLELSQF++V+++KK+INE
Sbjct: 1   MEFSQDDFDRLLRFEHTRKSAEATYAKDPLDADNLTKWGEALLELSQFQTVAEAKKMINE 60

Query: 61  AISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN 120
           AISK EEA++++P  +  +WS+GNA+TS  FLT DLSEAK  FDKA++ FQ+AVDE+ TN
Sbjct: 61  AISKLEEAMMLNPTAN-AMWSIGNANTSYAFLTPDLSEAKNYFDKAADYFQQAVDEDSTN 119

Query: 121 ELYQKSLEVSTKAPELHMELHKHGINQQTLGGGSSASS 158
           ELY KSLEV  KAPELHME+HKH  +QQT+GG SS SS
Sbjct: 120 ELYHKSLEVCAKAPELHMEIHKHSSSQQTMGGESSPSS 157

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449450365|ref|XP_004142933.1| PREDICTED: mitochondrial import receptor subunit TOM20-like [Cucumis sativus]

 Score =  224 bits (570), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 109/161 (67%), Positives = 128/161 (79%), Gaps = 3/161 (1%)

Query: 1   MEFSQSDFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINE 60
           MEFSQ DFDRLLL EH RKTAEANYA +PLDADNLT+WG ALLELSQF+SVSDSK +I +
Sbjct: 1   MEFSQDDFDRLLLFEHTRKTAEANYAANPLDADNLTKWGGALLELSQFQSVSDSKNMIKD 60

Query: 61  AISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN 120
           A+ K EEAL I+P KH  LW +GNAHTS  FLT D  EA+  FDKA ECFQ+A+DE+P N
Sbjct: 61  AVEKLEEALTINPTKHDALWCIGNAHTSQAFLTPDRDEAQVYFDKAQECFQKALDEDPGN 120

Query: 121 ELYQKSLEVSTKAPELHMELHKHGINQQTL---GGGSSASS 158
           ELY KSLEV+ KAP  H E+HKHG +QQ+    GGG++A+S
Sbjct: 121 ELYHKSLEVAAKAPGFHSEIHKHGTSQQSAGSSGGGATAAS 161

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224057709|ref|XP_002299299.1| predicted protein [Populus trichocarpa] gi|118481274|gb|ABK92583.1| unknown [Populus trichocarpa] gi|222846557|gb|EEE84104.1| predicted protein [Populus trichocarpa]

 Score =  224 bits (570), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 106/159 (66%), Positives = 132/159 (83%), Gaps = 1/159 (0%)

Query: 1   MEFSQSDFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINE 60
           MEFSQ DFDRLL+ EH RKTAEA YA+DPLDA NLT+WGEALLELSQF++V+++KK+IN+
Sbjct: 1   MEFSQDDFDRLLMFEHARKTAEATYARDPLDATNLTKWGEALLELSQFQTVAEAKKMIND 60

Query: 61  AISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN 120
           AISK EEAL+++P  +  +WS+GNA+TS  FLT DL EAK  FDKA+  FQ+AVDE+P N
Sbjct: 61  AISKLEEALMLNPTSN-AMWSIGNANTSYAFLTPDLDEAKSYFDKAANYFQQAVDEDPNN 119

Query: 121 ELYQKSLEVSTKAPELHMELHKHGINQQTLGGGSSASSA 159
           ELY+KSLEV  KAPELH E+HKH  +QQ +GGG S +S+
Sbjct: 120 ELYRKSLEVCAKAPELHTEIHKHSSSQQIMGGGGSTASS 158

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225451445|ref|XP_002269795.1| PREDICTED: mitochondrial import receptor subunit TOM20 [Vitis vinifera] gi|296082346|emb|CBI21351.3| unnamed protein product [Vitis vinifera]

 Score =  218 bits (554), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 105/148 (70%), Positives = 122/148 (82%)

Query: 5   QSDFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISK 64
           QSDFDRLL  EH RKTAEA YAK+P DADNLTRWG ALLELSQF+SV DSKK+I +AISK
Sbjct: 4   QSDFDRLLFFEHARKTAEATYAKNPQDADNLTRWGGALLELSQFQSVPDSKKMIQDAISK 63

Query: 65  FEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQ 124
            EEAL+++P KH TLW LGNAHTS  FLT D  EA+  FDKAS+ FQ+AVDE+P N+LY+
Sbjct: 64  LEEALMLNPNKHDTLWCLGNAHTSHAFLTPDQDEARDYFDKASQYFQQAVDEDPGNDLYR 123

Query: 125 KSLEVSTKAPELHMELHKHGINQQTLGG 152
           KSLEV+ KAPELHME+HK G +QQ +G 
Sbjct: 124 KSLEVAAKAPELHMEIHKQGFSQQAMGA 151

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255547728|ref|XP_002514921.1| Mitochondrial import receptor subunit TOM20, putative [Ricinus communis] gi|223545972|gb|EEF47475.1| Mitochondrial import receptor subunit TOM20, putative [Ricinus communis]

 Score =  216 bits (550), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 98/162 (60%), Positives = 129/162 (79%)

Query: 1   MEFSQSDFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINE 60
           M+F+Q DFDR L  EH RK+AE  YAKDPLD+DNLT+WG +L+ELSQF  + D+K+++ E
Sbjct: 1   MDFTQEDFDRFLTFEHARKSAETAYAKDPLDSDNLTKWGGSLIELSQFHPLQDAKRMLTE 60

Query: 61  AISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN 120
           AISK EEALVI+P K  TLW +GNA+TS  FLT DL+ A+G F KA++ FQ+AVD +P+N
Sbjct: 61  AISKLEEALVINPVKAETLWYIGNANTSFAFLTPDLTVAEGYFSKAADYFQQAVDADPSN 120

Query: 121 ELYQKSLEVSTKAPELHMELHKHGINQQTLGGGSSASSAQVN 162
           ELY+KSLEV+ KAPELHME+HK G+++Q +G G + +SA  N
Sbjct: 121 ELYRKSLEVTAKAPELHMEIHKQGVDEQAMGAGPAGASASSN 162

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255536895|ref|XP_002509514.1| Mitochondrial import receptor subunit TOM20, putative [Ricinus communis] gi|223549413|gb|EEF50901.1| Mitochondrial import receptor subunit TOM20, putative [Ricinus communis]

 Score =  216 bits (549), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 100/154 (64%), Positives = 124/154 (80%)

Query: 5   QSDFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISK 64
           Q+DFDR+L  EH RKTAEA YAK+PLDA+NLTRWG ALLEL+QF++V DSKK+I + I+K
Sbjct: 4   QNDFDRILFFEHARKTAEATYAKNPLDAENLTRWGGALLELAQFQNVPDSKKMILDGITK 63

Query: 65  FEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQ 124
            EEAL+I P KH TLW +GNAHTS  FLT DL EAK  FDKA+  FQ+AV+E+P NELY+
Sbjct: 64  LEEALLIQPKKHDTLWCIGNAHTSFAFLTPDLDEAKESFDKATVYFQQAVEEDPENELYR 123

Query: 125 KSLEVSTKAPELHMELHKHGINQQTLGGGSSASS 158
           KSLEV+ KAPELHME+H+HG+ QQ +G   ++  
Sbjct: 124 KSLEVAAKAPELHMEIHRHGLGQQAMGAAPASGP 157

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388513623|gb|AFK44873.1| unknown [Lotus japonicus]

 Score =  214 bits (545), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 108/163 (66%), Positives = 124/163 (76%), Gaps = 5/163 (3%)

Query: 1   MEFSQSDFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINE 60
           M+  QS+FDRLL  EH RK AEA YAK+PLDADNLTRWG ALLELSQF+S  DSKK+  E
Sbjct: 1   MDMQQSEFDRLLFFEHARKAAEAEYAKNPLDADNLTRWGGALLELSQFQSFPDSKKMTQE 60

Query: 61  AISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN 120
           A+SK EEALVI+P KH TLW LGNAHTS  FL  DL EAK  FDKA+E FQ AV+E+P N
Sbjct: 61  AVSKLEEALVINPKKHDTLWCLGNAHTSQAFLIPDLEEAKVYFDKAAEYFQLAVEEDPEN 120

Query: 121 ELYQKSLEVSTKAPELHMELHKHGINQQT-----LGGGSSASS 158
           ELY+KS EV+ KAPELH+E+HKHG  QQ      + G SS+S 
Sbjct: 121 ELYKKSWEVAAKAPELHVEIHKHGFGQQQQQSAGIAGPSSSSG 163

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356566216|ref|XP_003551330.1| PREDICTED: mitochondrial import receptor subunit TOM20-like [Glycine max]

 Score =  214 bits (545), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 102/160 (63%), Positives = 132/160 (82%), Gaps = 1/160 (0%)

Query: 1   MEFSQSDFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINE 60
           MEFSQ DFDRLLL EH RK+AEANYA++PLDADNLT+WG AL+ELS F++  D+K +I++
Sbjct: 1   MEFSQDDFDRLLLFEHTRKSAEANYAENPLDADNLTKWGGALIELSSFQAPKDAKAMIDD 60

Query: 61  AISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN 120
           A+SK EEAL+I+P KH TLW LGNA+TS  FL  D++EAKG FDKA + FQ+AVDE+P N
Sbjct: 61  ALSKLEEALLINPTKHDTLWCLGNANTSYAFLIPDITEAKGYFDKALDYFQKAVDEDPEN 120

Query: 121 ELYQKSLEVSTKAPELHMELHKHGINQQTLGGGSSASSAQ 160
           +LY+KSL+V+ KAPELHME+HK+G+   +   GSSA+S +
Sbjct: 121 DLYRKSLQVAIKAPELHMEIHKNGLGLMS-NAGSSATSKE 159

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449494436|ref|XP_004159545.1| PREDICTED: mitochondrial import receptor subunit TOM20-like [Cucumis sativus]

 Score =  211 bits (536), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 101/143 (70%), Positives = 115/143 (80%)

Query: 1   MEFSQSDFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINE 60
           MEFSQ DFDRLLL EH RKTAEANYA +PLDADNLT+WG ALLELSQF+SVSDSK +I +
Sbjct: 1   MEFSQDDFDRLLLFEHTRKTAEANYAANPLDADNLTKWGGALLELSQFQSVSDSKNMIKD 60

Query: 61  AISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN 120
           A+ K EEAL I+P KH  LW +GNAHTS  FLT D  EA+  FDKA ECFQ+A+DE+P N
Sbjct: 61  AVGKLEEALTINPTKHDALWCIGNAHTSQAFLTPDRDEAQVYFDKAQECFQKALDEDPGN 120

Query: 121 ELYQKSLEVSTKAPELHMELHKH 143
           ELY KSLEV+ KAP  H E+HKH
Sbjct: 121 ELYHKSLEVAAKAPGFHSEIHKH 143

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722735|ref|NP_001238022.1| uncharacterized protein LOC100527313 [Glycine max] gi|255632065|gb|ACU16385.1| unknown [Glycine max]

 Score =  209 bits (531), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 100/157 (63%), Positives = 128/157 (81%), Gaps = 1/157 (0%)

Query: 1   MEFSQSDFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINE 60
           MEFSQ DFDRLLL EH RKTAEANYA++P DADNLTRWG AL+ELS F++  D+K +I++
Sbjct: 1   MEFSQDDFDRLLLFEHTRKTAEANYAENPQDADNLTRWGGALIELSSFQAPRDAKAMIDD 60

Query: 61  AISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN 120
           A+SK EE+L+I+P KH TLW LGNA+TS  FL  D++EAKG FDKA E FQ+A +E+P N
Sbjct: 61  ALSKLEESLLINPTKHDTLWCLGNANTSYAFLIPDITEAKGYFDKALEYFQKAAEEDPEN 120

Query: 121 ELYQKSLEVSTKAPELHMELHKHGINQQTLGGGSSAS 157
           +LY+KSL+V+ KAPELHME+HK+G+   +   GSSA+
Sbjct: 121 DLYRKSLQVAVKAPELHMEIHKNGLGLMS-NAGSSAT 156

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	174
TAIR|locus:2015904	210	TOM20-2 "AT1G27390" [Arabidops	0.879	0.728	0.562	1.3e-43
TAIR|locus:2092045	202	TOM20-3 "AT3G27080" [Arabidops	0.850	0.732	0.574	3.2e-42
TAIR|locus:2167737	187	TOM20-4 "AT5G40930" [Arabidops	0.752	0.700	0.593	2.4e-37

TAIR|locus:2015904 TOM20-2 "AT1G27390" [Arabidopsis thaliana (taxid:3702)]

 Score = 460 (167.0 bits), Expect = 1.3e-43, P = 1.3e-43
 Identities = 86/153 (56%), Positives = 113/153 (73%)

Query:     1 MEFSQSDFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINE 60
             MEFS +DF+RL++ EH RK +EA Y  DPLD++NL +WG ALLELSQF+ + ++K ++N+
Sbjct:     1 MEFSTADFERLIMFEHARKNSEAQYKNDPLDSENLLKWGGALLELSQFQPIPEAKLMLND 60

Query:    61 AISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN 120
             AISK EEAL I+P KH  LW + NA+T+  F   D  EAK  FDKA+E FQRA +E+P N
Sbjct:    61 AISKLEEALTINPGKHQALWCIANAYTAHAFYVHDPEEAKEHFDKATEYFQRAENEDPGN 120

Query:   121 ELYQKSLEVSTKAPELHMELHKHGINQQTLGGG 153
             + Y+KSL+ S KAPELHM+    G+ QQ LGGG
Sbjct:   121 DTYRKSLDSSLKAPELHMQFMNQGMGQQILGGG 153

GO:0005739 "mitochondrion" evidence=ISM;IEA;IDA

GO:0045040 "protein import into mitochondrial outer membrane" evidence=IEA

GO:0005742 "mitochondrial outer membrane translocase complex" evidence=IDA

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=TAS

GO:0006626 "protein targeting to mitochondrion" evidence=RCA;IMP;TAS

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=TAS

GO:0046872 "metal ion binding" evidence=IDA

GO:0005741 "mitochondrial outer membrane" evidence=IDA

GO:0005743 "mitochondrial inner membrane" evidence=IDA

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

TAIR|locus:2092045 TOM20-3 "AT3G27080" [Arabidopsis thaliana (taxid:3702)]

 Score = 447 (162.4 bits), Expect = 3.2e-42, P = 3.2e-42
 Identities = 85/148 (57%), Positives = 113/148 (76%)

Query:     4 SQSDFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAIS 63
             ++++FDR+LL E  R+ AE  Y  +PLDADNLTRWG  LLELSQF S+SD+K++I EAI+
Sbjct:     3 TETEFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAIT 62

Query:    64 KFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELY 123
             KFEEAL+IDP K   +W +GNA+TS  FLT D +EAK +FD A++ FQ+AVDE+P N  Y
Sbjct:    63 KFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHY 122

Query:   124 QKSLEVSTKAPELHMELHKHGINQQTLG 151
              KSLE++ KAP+LH E +K G+  Q +G
Sbjct:   123 LKSLEMTAKAPQLHAEAYKQGLGSQPMG 150

GO:0005739 "mitochondrion" evidence=IEA;IDA

GO:0045040 "protein import into mitochondrial outer membrane" evidence=IEA

GO:0005742 "mitochondrial outer membrane translocase complex" evidence=IDA

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=TAS

GO:0006626 "protein targeting to mitochondrion" evidence=RCA;IMP;TAS

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=IDA;TAS

GO:0005741 "mitochondrial outer membrane" evidence=IDA

GO:0005743 "mitochondrial inner membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0009853 "photorespiration" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

GO:0080129 "proteasome core complex assembly" evidence=RCA

TAIR|locus:2167737 TOM20-4 "AT5G40930" [Arabidopsis thaliana (taxid:3702)]

 Score = 401 (146.2 bits), Expect = 2.4e-37, P = 2.4e-37
 Identities = 79/133 (59%), Positives = 105/133 (78%)

Query:     5 QSDFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISK 64
             Q++ +RL++ EH RK AEA Y K+PLDA+NLTRW  ALLELSQF++  + K++I EAI K
Sbjct:     4 QNENERLMVFEHARKVAEATYVKNPLDAENLTRWAGALLELSQFQT--EPKQMILEAILK 61

Query:    65 FEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQ 124
               EALVIDP KH  LW +GNAH S GFL++D +EA  +F+KAS+ FQ AV+E+P +ELY+
Sbjct:    62 LGEALVIDPKKHDALWLIGNAHLSFGFLSSDQTEASDNFEKASQFFQLAVEEQPESELYR 121

Query:   125 KSLEVSTKAPELH 137
             KSL +++KAPELH
Sbjct:   122 KSLTLASKAPELH 134


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.314   0.128   0.367    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      174       174   0.00075  109 3  11 23  0.44    32
                                                     31  0.49    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  596 (63 KB)
  Total size of DFA:  160 KB (2096 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  18.66u 0.07s 18.73t   Elapsed:  00:00:01
  Total cpu time:  18.66u 0.07s 18.73t   Elapsed:  00:00:01
  Start:  Sat May 11 08:29:45 2013   End:  Sat May 11 08:29:46 2013

GO:0005739 "mitochondrion" evidence=ISM;IEA

GO:0005742 "mitochondrial outer membrane translocase complex" evidence=IDA

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=TAS

GO:0006626 "protein targeting to mitochondrion" evidence=RCA;IMP;TAS

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=TAS

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0000278 "mitotic cell cycle" evidence=RCA

GO:0006396 "RNA processing" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P82874	TO203_ARATH	No assigned EC number	0.5743	0.8505	0.7326	yes	no
Q5JJI4	TOM20_ORYSJ	No assigned EC number	0.5357	0.8045	0.6930	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	174
pfam06552	186	pfam06552, TOM20_plant, Plant specific mitochondri	2e-76
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	6e-04

>gnl|CDD|191555 pfam06552, TOM20_plant, Plant specific mitochondrial import receptor subunit TOM20

 Score =  226 bits (576), Expect = 2e-76
 Identities = 99/153 (64%), Positives = 125/153 (81%)

Query: 8   FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEE 67
           FDRLL+ EH RK+AEA Y K+PLDADNLTRWG ALLELSQF+SV D+K++IN+AISK EE
Sbjct: 1   FDRLLMFEHARKSAEATYKKNPLDADNLTRWGGALLELSQFQSVPDAKQMINDAISKLEE 60

Query: 68  ALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSL 127
           ALVI+P KH  LW +GNA+TS  FLT D +EAK +FDKA++ FQ+AVDE+P N+LY+KSL
Sbjct: 61  ALVINPKKHDALWCIGNAYTSFAFLTPDPTEAKENFDKATQFFQQAVDEQPDNDLYRKSL 120

Query: 128 EVSTKAPELHMELHKHGINQQTLGGGSSASSAQ 160
           E++ KAPELH E HK G+  Q +GG + +S +Q
Sbjct: 121 EMAAKAPELHTEFHKQGLGSQIMGGEAPSSPSQ 153

This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria. Length = 186

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 37.0 bits (86), Expect = 6e-04
 Identities = 15/67 (22%), Positives = 32/67 (47%), Gaps = 11/67 (16%)

Query: 54  SKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRA 113
                +EA+  +E+AL +DP      ++L  A+              G +++A E +++A
Sbjct: 12  KLGDYDEALEYYEKALELDPDNADAYYNLAAAYYK-----------LGKYEEALEDYEKA 60

Query: 114 VDEEPTN 120
           ++ +P N
Sbjct: 61  LELDPDN 67

Length = 100

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	174
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	99.95
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.8
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.78
PRK15359	144	type III secretion system chaperone protein SscB;	99.69
KOG0553	304	consensus TPR repeat-containing protein [General f	99.68
PRK12370	553	invasion protein regulator; Provisional	99.67
PRK11189	296	lipoprotein NlpI; Provisional	99.66
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.66
PRK12370	553	invasion protein regulator; Provisional	99.64
KOG1126	638	consensus DNA-binding cell division cycle control	99.63
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.62
PRK15359	144	type III secretion system chaperone protein SscB;	99.61
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.56
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.54
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.52
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.52
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.52
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.51
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.49
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.48
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.48
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.47
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.46
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.46
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.45
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.42
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.42
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.42
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.41
PLN02789	320	farnesyltranstransferase	99.41
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.4
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.39
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.39
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.39
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.37
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	99.37
KOG1126	638	consensus DNA-binding cell division cycle control	99.37
PRK11189	296	lipoprotein NlpI; Provisional	99.37
PLN02789	320	farnesyltranstransferase	99.36
KOG1125	579	consensus TPR repeat-containing protein [General f	99.33
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.31
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.3
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.29
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	99.29
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.29
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.28
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.28
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.28
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.26
KOG1125	579	consensus TPR repeat-containing protein [General f	99.25
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.24
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.23
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.23
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.19
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.19
PRK10803	263	tol-pal system protein YbgF; Provisional	99.18
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.18
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.18
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	99.17
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.14
KOG3060	289	consensus Uncharacterized conserved protein [Funct	99.14
PRK15331	165	chaperone protein SicA; Provisional	99.14
KOG1129	478	consensus TPR repeat-containing protein [General f	99.14
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.13
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.12
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.12
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.09
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.08
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	99.07
KOG1129	478	consensus TPR repeat-containing protein [General f	99.07
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.06
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.05
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	99.03
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.02
KOG0553	304	consensus TPR repeat-containing protein [General f	99.02
PF13371	73	TPR_9: Tetratricopeptide repeat	99.02
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	99.02
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	99.01
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.01
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	98.99
PRK11906	458	transcriptional regulator; Provisional	98.99
PRK11906	458	transcriptional regulator; Provisional	98.99
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	98.98
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.96
KOG2076	895	consensus RNA polymerase III transcription factor	98.96
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.95
PRK14574	822	hmsH outer membrane protein; Provisional	98.95
PF12688	120	TPR_5: Tetratrico peptide repeat	98.94
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.93
PRK14574	822	hmsH outer membrane protein; Provisional	98.92
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.91
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.91
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.89
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	98.89
PF13371	73	TPR_9: Tetratricopeptide repeat	98.87
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.83
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.83
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.82
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	98.82
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.81
KOG4234	271	consensus TPR repeat-containing protein [General f	98.8
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.8
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.78
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.76
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.73
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.73
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	98.73
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.72
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	98.7
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	98.69
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.62
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.62
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.6
PF13431	34	TPR_17: Tetratricopeptide repeat	98.59
PRK10803	263	tol-pal system protein YbgF; Provisional	98.58
KOG4648	536	consensus Uncharacterized conserved protein, conta	98.58
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.57
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.56
PF13428	44	TPR_14: Tetratricopeptide repeat	98.56
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	98.55
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.54
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.52
KOG2003	840	consensus TPR repeat-containing protein [General f	98.52
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	98.5
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	98.5
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	98.5
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.5
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	98.49
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.49
KOG2076	895	consensus RNA polymerase III transcription factor	98.48
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.48
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.48
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	98.47
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.46
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.45
PF12688	120	TPR_5: Tetratrico peptide repeat	98.45
PF13512	142	TPR_18: Tetratricopeptide repeat	98.44
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	98.44
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.42
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.35
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.33
KOG0495	913	consensus HAT repeat protein [RNA processing and m	98.32
PRK15331	165	chaperone protein SicA; Provisional	98.32
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	98.31
KOG2003	840	consensus TPR repeat-containing protein [General f	98.3
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.3
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.28
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.28
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.28
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	98.26
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.26
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.22
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	98.22
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.2
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	98.17
PF13431	34	TPR_17: Tetratricopeptide repeat	98.12
KOG4555	175	consensus TPR repeat-containing protein [Function	98.11
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.09
PF13428	44	TPR_14: Tetratricopeptide repeat	98.06
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	98.03
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.01
PF13512	142	TPR_18: Tetratricopeptide repeat	98.0
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	97.99
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	97.95
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.94
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	97.91
COG0457	291	NrfG FOG: TPR repeat [General function prediction	97.9
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	97.88
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	97.86
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	97.84
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	97.83
COG0457	291	NrfG FOG: TPR repeat [General function prediction	97.83
KOG0495	913	consensus HAT repeat protein [RNA processing and m	97.82
KOG3785	557	consensus Uncharacterized conserved protein [Funct	97.82
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	97.77
KOG4507	886	consensus Uncharacterized conserved protein, conta	97.72
KOG3785	557	consensus Uncharacterized conserved protein [Funct	97.7
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.69
KOG4648	536	consensus Uncharacterized conserved protein, conta	97.69
KOG2376	652	consensus Signal recognition particle, subunit Srp	97.69
KOG4555	175	consensus TPR repeat-containing protein [Function	97.68
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	97.61
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.56
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	97.53
PLN03077	857	Protein ECB2; Provisional	97.5
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	97.49
KOG4234	271	consensus TPR repeat-containing protein [General f	97.46
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	97.46
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.45
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	97.45
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	97.44
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	97.41
COG3118	304	Thioredoxin domain-containing protein [Posttransla	97.39
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	97.38
COG4105	254	ComL DNA uptake lipoprotein [General function pred	97.37
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.36
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	97.3
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	97.29
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	97.28
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	97.26
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	97.25
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	97.24
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	97.24
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	97.22
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	97.21
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	97.21
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.19
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.17
KOG3364	149	consensus Membrane protein involved in organellar	97.1
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.07
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.04
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	97.03
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	97.02
PLN03218	1060	maturation of RBCL 1; Provisional	96.94
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	96.91
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	96.89
COG4105	254	ComL DNA uptake lipoprotein [General function pred	96.85
PLN03077	857	Protein ECB2; Provisional	96.84
PLN03218	1060	maturation of RBCL 1; Provisional	96.83
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.81
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	96.81
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	96.79
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	96.79
KOG2376	652	consensus Signal recognition particle, subunit Srp	96.78
KOG2796	366	consensus Uncharacterized conserved protein [Funct	96.78
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	96.78
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	96.73
PRK10941	269	hypothetical protein; Provisional	96.71
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	96.69
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	96.66
KOG4340	459	consensus Uncharacterized conserved protein [Funct	96.58
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	96.52
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	96.49
KOG4340	459	consensus Uncharacterized conserved protein [Funct	96.48
PRK10941	269	hypothetical protein; Provisional	96.46
COG4976	287	Predicted methyltransferase (contains TPR repeat)	96.39
PF03704	146	BTAD: Bacterial transcriptional activator domain;	96.38
KOG1941	518	consensus Acetylcholine receptor-associated protei	96.37
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	96.33
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	96.33
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	96.3
KOG1310	758	consensus WD40 repeat protein [General function pr	96.2
PRK04841	903	transcriptional regulator MalT; Provisional	96.15
KOG2796	366	consensus Uncharacterized conserved protein [Funct	96.1
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	95.97
COG4976	287	Predicted methyltransferase (contains TPR repeat)	95.95
COG3118	304	Thioredoxin domain-containing protein [Posttransla	95.94
KOG2471	696	consensus TPR repeat-containing protein [General f	95.92
KOG1915	677	consensus Cell cycle control protein (crooked neck	95.85
KOG2610	491	consensus Uncharacterized conserved protein [Funct	95.74
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	95.73
PRK04841	903	transcriptional regulator MalT; Provisional	95.6
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	95.58
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	95.54
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	95.44
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	95.43
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	95.43
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	95.34
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	95.26
KOG4507	886	consensus Uncharacterized conserved protein, conta	95.15
COG5191	435	Uncharacterized conserved protein, contains HAT (H	95.11
KOG1915	677	consensus Cell cycle control protein (crooked neck	95.07
KOG1550	552	consensus Extracellular protein SEL-1 and related	95.03
KOG2610	491	consensus Uncharacterized conserved protein [Funct	94.96
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	94.8
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	94.61
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	94.55
KOG2471	696	consensus TPR repeat-containing protein [General f	94.33
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	94.29
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	94.19
KOG0529	421	consensus Protein geranylgeranyltransferase type I	94.07
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	93.87
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	93.74
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	93.72
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	93.63
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	93.51
KOG1941	518	consensus Acetylcholine receptor-associated protei	93.46
COG3629	280	DnrI DNA-binding transcriptional activator of the	93.4
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	93.35
COG2912	269	Uncharacterized conserved protein [Function unknow	93.28
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	93.21
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	93.21
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	93.18
KOG4814	872	consensus Uncharacterized conserved protein [Funct	93.09
KOG1586	288	consensus Protein required for fusion of vesicles	92.94
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	92.93
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	92.92
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	92.87
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	92.8
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	92.64
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	92.63
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	92.27
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	91.79
COG2912	269	Uncharacterized conserved protein [Function unknow	91.78
COG3947	361	Response regulator containing CheY-like receiver a	91.53
KOG0529	421	consensus Protein geranylgeranyltransferase type I	91.48
COG3898	531	Uncharacterized membrane-bound protein [Function u	91.47
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	90.65
COG5191	435	Uncharacterized conserved protein, contains HAT (H	90.54
COG4455	273	ImpE Protein of avirulence locus involved in tempe	90.49
KOG1585	308	consensus Protein required for fusion of vesicles	90.47
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	90.32
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	90.29
KOG3364	149	consensus Membrane protein involved in organellar	90.23
KOG2047	835	consensus mRNA splicing factor [RNA processing and	90.09
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	90.07
KOG2047	835	consensus mRNA splicing factor [RNA processing and	89.76
KOG1586	288	consensus Protein required for fusion of vesicles	89.12
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	88.52
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	88.51
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	88.45
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	88.44
smart00386	33	HAT HAT (Half-A-TPR) repeats. Present in several R	88.26
KOG0546	372	consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos	87.24
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	87.18
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	86.88
COG3629	280	DnrI DNA-binding transcriptional activator of the	86.41
KOG2300	629	consensus Uncharacterized conserved protein [Funct	86.22
smart00386	33	HAT HAT (Half-A-TPR) repeats. Present in several R	85.65
PF12753	404	Nro1: Nuclear pore complex subunit Nro1; InterPro:	85.3
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	84.99
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	84.97
smart00299	140	CLH Clathrin heavy chain repeat homology.	84.6
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	84.57
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	84.28
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	84.07
PF11846	193	DUF3366: Domain of unknown function (DUF3366); Int	84.04
KOG1585	308	consensus Protein required for fusion of vesicles	83.86
KOG1310	758	consensus WD40 repeat protein [General function pr	83.33
KOG1550	552	consensus Extracellular protein SEL-1 and related	82.89
KOG3807	556	consensus Predicted membrane protein ST7 (tumor su	82.41
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	82.23
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	82.09
PF14863	141	Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB	81.79
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	81.65
PF09797	365	NatB_MDM20: N-acetyltransferase B complex (NatB) n	81.5
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	81.38
PF04212	69	MIT: MIT (microtubule interacting and transport) d	81.06
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	80.31
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	80.29

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=99.95  E-value=6.5e-28  Score=187.41  Aligned_cols=149  Identities=66%  Similarity=1.017  Sum_probs=126.3

Q ss_pred             HHhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 030634            8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT   87 (174)
Q Consensus         8 ~~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~   87 (174)
                      |||+..|++|++.++..+..+|.|++++++||.+++++.+++++.+...++++|+..|++||.++|+.+++++++|++|.
T Consensus         1 ~~rl~~FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~t   80 (186)
T PF06552_consen    1 FERLLFFEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYT   80 (186)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCHHHHHHHhcCCCChHHHHHHHHHHHhccccCCCCch
Q 030634           88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLEVSTKAPELHMELHKHGINQQTLGGGSSA  156 (174)
Q Consensus        88 ~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~~y~~Al~l~~~~~~~~~~l~~~~~~~~~~~~~~~~  156 (174)
                      .+|+++|+..++.+.|++|..||++|+.++|+|..|+++|++..++|++|..+.+.+..|+..+++++.
T Consensus        81 s~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~kap~lh~e~~~~~~~~q~~~~~~~~  149 (186)
T PF06552_consen   81 SLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAAKAPELHMEIHKQGLGQQAMGGASSS  149 (186)
T ss_dssp             HHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHTHHHHHHHHHHSSS-----------
T ss_pred             HHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhHHHHHHHHHHHhhhhhccCCCCC
Confidence            999999999999999999999999999999999999999999999999999999999999988776443

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.80  E-value=8.3e-19  Score=156.74  Aligned_cols=153  Identities=22%  Similarity=0.231  Sum_probs=119.9

Q ss_pred             hHHhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCccc------------------------chhhhhhHHHHH
Q 030634            7 DFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFES------------------------VSDSKKIINEAI   62 (174)
Q Consensus         7 ~~~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~------------------------~~~~~~~~~eAi   62 (174)
                      -|..+|..-.|+..|++|+.++|+.++++++||++|.+++.|+.                        +.-.+|.++-||
T Consensus       227 ~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI  306 (966)
T KOG4626|consen  227 VFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAI  306 (966)
T ss_pred             HHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHH
Confidence            36678899999999999999999999999999999999988864                        222367789999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH---------------------
Q 030634           63 SKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------  121 (174)
Q Consensus        63 ~~lekAl~ldP~~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~---------------------  121 (174)
                      .+|++||+++|+.++|+.|||+++-..|           +..+|..||.+||.+.|+++                     
T Consensus       307 ~~Ykral~~~P~F~~Ay~NlanALkd~G-----------~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~  375 (966)
T KOG4626|consen  307 DTYKRALELQPNFPDAYNNLANALKDKG-----------SVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATR  375 (966)
T ss_pred             HHHHHHHhcCCCchHHHhHHHHHHHhcc-----------chHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHH
Confidence            9999999999999999999999999988           88888888888888888877                     


Q ss_pred             HHHHHHhcCCCChHHHHHHHHHHHhcccc-----------CCCCchhhHHHHHHHHHhhh
Q 030634          122 LYQKSLEVSTKAPELHMELHKHGINQQTL-----------GGGSSASSAQVNFCICVHQM  170 (174)
Q Consensus       122 ~y~~Al~l~~~~~~~~~~l~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~  170 (174)
                      .|+++|++.|+-..++.||+.+|-.||.+           -+.|-+++++.|.|..+--|
T Consensus       376 ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~  435 (966)
T KOG4626|consen  376 LYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEM  435 (966)
T ss_pred             HHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHh
Confidence            56666666666666666666666666665           33366666666666555433

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.78  E-value=8.8e-19  Score=156.57  Aligned_cols=151  Identities=19%  Similarity=0.177  Sum_probs=111.5

Q ss_pred             HhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 030634            9 DRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTS   88 (174)
Q Consensus         9 ~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~   88 (174)
                      +-+|+.+||...|.+|++.+|..+-+|.+||.++...|+.          ..||..|++|+++||+.++||+|||++|..
T Consensus       195 ka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei----------~~aiq~y~eAvkldP~f~dAYiNLGnV~ke  264 (966)
T KOG4626|consen  195 KAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEI----------WLAIQHYEEAVKLDPNFLDAYINLGNVYKE  264 (966)
T ss_pred             HhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchH----------HHHHHHHHHhhcCCCcchHHHhhHHHHHHH
Confidence            4577899999999999999999999999999999988887          999999999999999999999999999998


Q ss_pred             CCC-------------Cccchh----------hhhcCHHHHHHHHHHHHHhCCCCH---------------------HHH
Q 030634           89 CGF-------------LTADLS----------EAKGDFDKASECFQRAVDEEPTNE---------------------LYQ  124 (174)
Q Consensus        89 lG~-------------~~~~~~----------~a~~~~~~Ai~~~~kAl~l~P~~~---------------------~y~  124 (174)
                      .+.             ++|..-          --.|..+-||.+|++||+++|+.+                     +|.
T Consensus       265 ~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYn  344 (966)
T KOG4626|consen  265 ARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYN  344 (966)
T ss_pred             HhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHH
Confidence            882             111111          113445555555555555555554                     566


Q ss_pred             HHHhcCCCChHHHHHHHHHHHhcccc-----------CCCCchhhHHHHHHHHHhh
Q 030634          125 KSLEVSTKAPELHMELHKHGINQQTL-----------GGGSSASSAQVNFCICVHQ  169 (174)
Q Consensus       125 ~Al~l~~~~~~~~~~l~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~  169 (174)
                      +||+++|..++...|||+++.+||-.           ..-|.++.++.|+++.+.|
T Consensus       345 kaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kq  400 (966)
T KOG4626|consen  345 KALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQ  400 (966)
T ss_pred             HHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHh
Confidence            66666666666666666666666655           1127777777777776654

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.69  E-value=4.9e-16  Score=117.44  Aligned_cols=97  Identities=14%  Similarity=0.109  Sum_probs=90.6

Q ss_pred             hHHhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 030634            7 DFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAH   86 (174)
Q Consensus         7 ~~~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~   86 (174)
                      .+-++|++++|+..+++++.++|.++.+|.++|.++..+|++          ++|+..|+++++++|+++.+++++|.++
T Consensus        33 ~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~----------~~A~~~y~~Al~l~p~~~~a~~~lg~~l  102 (144)
T PRK15359         33 ASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEY----------TTAINFYGHALMLDASHPEPVYQTGVCL  102 (144)
T ss_pred             HHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhH----------HHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence            346788999999999999999999999999999999999999          9999999999999999999999999999


Q ss_pred             HhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCHHHH
Q 030634           87 TSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQ  124 (174)
Q Consensus        87 ~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~~y~  124 (174)
                      ..+|           ++++|+.+|+++++++|++..+.
T Consensus       103 ~~~g-----------~~~eAi~~~~~Al~~~p~~~~~~  129 (144)
T PRK15359        103 KMMG-----------EPGLAREAFQTAIKMSYADASWS  129 (144)
T ss_pred             HHcC-----------CHHHHHHHHHHHHHhCCCChHHH
Confidence            9999           99999999999999888877444

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.68  E-value=2.7e-16  Score=130.50  Aligned_cols=97  Identities=25%  Similarity=0.379  Sum_probs=93.1

Q ss_pred             hhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCC
Q 030634           12 LLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGF   91 (174)
Q Consensus        12 ~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~   91 (174)
                      +.|.+|+..|.+||.++|+|+..|.+.+.+|.++|++          +.|++..+.||.+||....+|-.||.+|..+| 
T Consensus        95 ~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~----------~~AVkDce~Al~iDp~yskay~RLG~A~~~~g-  163 (304)
T KOG0553|consen   95 KDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEY----------EDAVKDCESALSIDPHYSKAYGRLGLAYLALG-  163 (304)
T ss_pred             hhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcch----------HHHHHHHHHHHhcChHHHHHHHHHHHHHHccC-
Confidence            4899999999999999999999999999999999999          99999999999999999999999999999999 


Q ss_pred             CccchhhhhcCHHHHHHHHHHHHHhCCCCHHHHHHHhc
Q 030634           92 LTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLEV  129 (174)
Q Consensus        92 ~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~~y~~Al~l  129 (174)
                                ++++|++.|+|||+++|+++.|+..|++
T Consensus       164 ----------k~~~A~~aykKaLeldP~Ne~~K~nL~~  191 (304)
T KOG0553|consen  164 ----------KYEEAIEAYKKALELDPDNESYKSNLKI  191 (304)
T ss_pred             ----------cHHHHHHHHHhhhccCCCcHHHHHHHHH
Confidence                      9999999999999999999988777643

>PRK12370 invasion protein regulator; Provisional

Probab=99.67  E-value=4.5e-15  Score=133.81  Aligned_cols=148  Identities=12%  Similarity=0.029  Sum_probs=125.2

Q ss_pred             hhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCC
Q 030634           12 LLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGF   91 (174)
Q Consensus        12 ~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~   91 (174)
                      ..+++|+..++++++++|+++.++..+|.++..++.... .+..+.+++|+..+++|++++|+++.+|..+|.++...| 
T Consensus       275 ~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~-~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g-  352 (553)
T PRK12370        275 YSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGI-FDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHS-  352 (553)
T ss_pred             HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCC-cccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc-
Confidence            356899999999999999999999999999987766432 123456799999999999999999999999999999988 


Q ss_pred             CccchhhhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHhcCCCChHHHHHHHHHHHhcccc
Q 030634           92 LTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELHKHGINQQTL  150 (174)
Q Consensus        92 ~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~---------------------~y~~Al~l~~~~~~~~~~l~~~~~~~~~~  150 (174)
                                ++++|+.+|++|++++|++.                     .++++++++|..+..+..++.+++.+|+.
T Consensus       353 ----------~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~  422 (553)
T PRK12370        353 ----------EYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGI  422 (553)
T ss_pred             ----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCH
Confidence                      99999999999999999987                     67899999999988777777667777765


Q ss_pred             ------------CCCCchhhHHHHHHHHHhhhc
Q 030634          151 ------------GGGSSASSAQVNFCICVHQMK  171 (174)
Q Consensus       151 ------------~~~~~~~~~~~~~~~~~~~~~  171 (174)
                                  ...|....++.|++.++.+.|
T Consensus       423 eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G  455 (553)
T PRK12370        423 DDAIRLGDELRSQHLQDNPILLSMQVMFLSLKG  455 (553)
T ss_pred             HHHHHHHHHHHHhccccCHHHHHHHHHHHHhCC
Confidence                        113677788999999987655

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.66  E-value=2.5e-15  Score=125.73  Aligned_cols=94  Identities=23%  Similarity=0.321  Sum_probs=90.9

Q ss_pred             hHHhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 030634            7 DFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAH   86 (174)
Q Consensus         7 ~~~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~   86 (174)
                      -|.++|.+++|+..++++++++|+++.+|+++|.++...|++          ++|+..|+++++++|++..+|+++|.++
T Consensus        73 ~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~----------~~A~~~~~~Al~l~P~~~~a~~~lg~~l  142 (296)
T PRK11189         73 LYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNF----------DAAYEAFDSVLELDPTYNYAYLNRGIAL  142 (296)
T ss_pred             HHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            367889999999999999999999999999999999999999          9999999999999999999999999999


Q ss_pred             HhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634           87 TSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (174)
Q Consensus        87 ~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~  121 (174)
                      ...|           ++++|++.|+++++++|++.
T Consensus       143 ~~~g-----------~~~eA~~~~~~al~~~P~~~  166 (296)
T PRK11189        143 YYGG-----------RYELAQDDLLAFYQDDPNDP  166 (296)
T ss_pred             HHCC-----------CHHHHHHHHHHHHHhCCCCH
Confidence            9999           99999999999999999986

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.66  E-value=2.6e-15  Score=136.41  Aligned_cols=121  Identities=16%  Similarity=0.193  Sum_probs=108.5

Q ss_pred             HhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 030634            9 DRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTS   88 (174)
Q Consensus         9 ~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~   88 (174)
                      -.+|++++|+..++++++++|+++.+|..+|.++...|++          ++|+..|+++++++|+++.+|+.+|.++..
T Consensus       342 ~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~----------~eA~~~~~~al~~~p~~~~~~~~lg~~~~~  411 (615)
T TIGR00990       342 CLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDP----------DKAEEDFDKALKLNSEDPDIYYHRAQLHFI  411 (615)
T ss_pred             HHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            4577888999999999999999999999999999888888          999999999999999999999999999999


Q ss_pred             CCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHhcCCCChHHHHHHHHHHHhc
Q 030634           89 CGFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELHKHGINQ  147 (174)
Q Consensus        89 lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~---------------------~y~~Al~l~~~~~~~~~~l~~~~~~~  147 (174)
                      +|           ++++|+.+|+++++++|++.                     .|+++++..|..+.++.++|.++..+
T Consensus       412 ~g-----------~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~  480 (615)
T TIGR00990       412 KG-----------EFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQ  480 (615)
T ss_pred             cC-----------CHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc
Confidence            88           99999999999999999886                     56778889999999999999999998


Q ss_pred             ccc
Q 030634          148 QTL  150 (174)
Q Consensus       148 ~~~  150 (174)
                      |+.
T Consensus       481 g~~  483 (615)
T TIGR00990       481 NKF  483 (615)
T ss_pred             cCH
Confidence            876

>PRK12370 invasion protein regulator; Provisional

Probab=99.64  E-value=9.1e-15  Score=131.82  Aligned_cols=119  Identities=13%  Similarity=0.045  Sum_probs=109.9

Q ss_pred             hhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCC
Q 030634           11 LLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCG   90 (174)
Q Consensus        11 ~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG   90 (174)
                      .+.+++|+..++++++++|+++.++..+|.++...|++          ++|+..|++|++++|+++.+|+.+|.++...|
T Consensus       317 ~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~----------~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G  386 (553)
T PRK12370        317 QNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEY----------IVGSLLFKQANLLSPISADIKYYYGWNLFMAG  386 (553)
T ss_pred             chHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Confidence            34589999999999999999999999999999999999          99999999999999999999999999999999


Q ss_pred             CCccchhhhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHhcC-CCChHHHHHHHHHHHhcc
Q 030634           91 FLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVS-TKAPELHMELHKHGINQQ  148 (174)
Q Consensus        91 ~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~---------------------~y~~Al~l~-~~~~~~~~~l~~~~~~~~  148 (174)
                                 ++++|+.+++++++++|++.                     .++++++.+ |..+..+.+++.++..+|
T Consensus       387 -----------~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G  455 (553)
T PRK12370        387 -----------QLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKG  455 (553)
T ss_pred             -----------CHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCC
Confidence                       99999999999999999975                     345666664 788999999999999999


Q ss_pred             cc
Q 030634          149 TL  150 (174)
Q Consensus       149 ~~  150 (174)
                      +.
T Consensus       456 ~~  457 (553)
T PRK12370        456 KH  457 (553)
T ss_pred             CH
Confidence            86

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.63  E-value=1.5e-15  Score=136.08  Aligned_cols=144  Identities=21%  Similarity=0.223  Sum_probs=128.7

Q ss_pred             HHhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 030634            8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT   87 (174)
Q Consensus         8 ~~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~   87 (174)
                      |-=|+.++.|++.+++|+.+||+++-++..+|.=+....++          +.|..+|++||..||++-.|||.||.+|.
T Consensus       431 fSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~----------d~a~~~fr~Al~~~~rhYnAwYGlG~vy~  500 (638)
T KOG1126|consen  431 FSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEF----------DKAMKSFRKALGVDPRHYNAWYGLGTVYL  500 (638)
T ss_pred             hhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHH----------HhHHHHHHhhhcCCchhhHHHHhhhhhee
Confidence            33466788888889999889998888888888888887777          99999999999999999999999999999


Q ss_pred             hCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHhcCCCChHHHHHHHHHHHh
Q 030634           88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELHKHGIN  146 (174)
Q Consensus        88 ~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~---------------------~y~~Al~l~~~~~~~~~~l~~~~~~  146 (174)
                      +++           +++.|..+|++|+++||.+.                     .|++|+-++|++|-..++.+.++..
T Consensus       501 Kqe-----------k~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~  569 (638)
T KOG1126|consen  501 KQE-----------KLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFS  569 (638)
T ss_pred             ccc-----------hhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHh
Confidence            988           99999999999999999997                     7889999999999999999999999


Q ss_pred             cccc-----------CCCCchhhHHHHHHHHHhhhcc
Q 030634          147 QQTL-----------GGGSSASSAQVNFCICVHQMKM  172 (174)
Q Consensus       147 ~~~~-----------~~~~~~~~~~~~~~~~~~~~~~  172 (174)
                      .++-           ...|+.++|++=++...-+|++
T Consensus       570 ~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~  606 (638)
T KOG1126|consen  570 LGRYVEALQELEELKELVPQESSVFALLGKIYKRLGN  606 (638)
T ss_pred             hcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHcc
Confidence            9987           4459999999988877666654

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.62  E-value=2.3e-14  Score=130.29  Aligned_cols=140  Identities=17%  Similarity=0.148  Sum_probs=129.2

Q ss_pred             hhhHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 030634           11 LLLSEHNRKTAEANYAK---DPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT   87 (174)
Q Consensus        11 ~~~~~eAl~~~~~al~~---~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~   87 (174)
                      .+.|++|++.++++++.   +|..+.++..+|.++..+|++          ++|+..|+++++++|++..+|+.+|.++.
T Consensus       307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~----------~eA~~~~~kal~l~P~~~~~~~~la~~~~  376 (615)
T TIGR00990       307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKH----------LEALADLSKSIELDPRVTQSYIKRASMNL  376 (615)
T ss_pred             hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence            35799999999999986   488899999999999999999          99999999999999999999999999999


Q ss_pred             hCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHhcCCCChHHHHHHHHHHHh
Q 030634           88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELHKHGIN  146 (174)
Q Consensus        88 ~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~---------------------~y~~Al~l~~~~~~~~~~l~~~~~~  146 (174)
                      .+|           ++++|+.+|+++++++|++.                     .|+++++++|+.+..+.+++.++..
T Consensus       377 ~~g-----------~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~  445 (615)
T TIGR00990       377 ELG-----------DPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYK  445 (615)
T ss_pred             HCC-----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHH
Confidence            999           99999999999999999997                     7889999999999999999999999


Q ss_pred             cccc-----------CCCCchhhHHHHHHHHHhhhc
Q 030634          147 QQTL-----------GGGSSASSAQVNFCICVHQMK  171 (174)
Q Consensus       147 ~~~~-----------~~~~~~~~~~~~~~~~~~~~~  171 (174)
                      +|+.           ...|...+++.+++.++..++
T Consensus       446 ~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g  481 (615)
T TIGR00990       446 EGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQN  481 (615)
T ss_pred             CCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcc
Confidence            9986           334888999999999887654

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.61  E-value=7.8e-15  Score=110.83  Aligned_cols=107  Identities=12%  Similarity=0.143  Sum_probs=95.1

Q ss_pred             HHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCccchh
Q 030634           18 RKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLS   97 (174)
Q Consensus        18 l~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~~~~~~~   97 (174)
                      ...++++++++|++   ++.+|.++...|++          ++|+..|++++.++|+++.+|+++|.++..+|       
T Consensus        13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~----------~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g-------   72 (144)
T PRK15359         13 EDILKQLLSVDPET---VYASGYASWQEGDY----------SRAVIDFSWLVMAQPWSWRAHIALAGTWMMLK-------   72 (144)
T ss_pred             HHHHHHHHHcCHHH---HHHHHHHHHHcCCH----------HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHh-------
Confidence            35789999999986   66789999999999          99999999999999999999999999999999       


Q ss_pred             hhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHhcCCCChHHHHHHHHHHHhcc
Q 030634           98 EAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELHKHGINQQ  148 (174)
Q Consensus        98 ~a~~~~~~Ai~~~~kAl~l~P~~~---------------------~y~~Al~l~~~~~~~~~~l~~~~~~~~  148 (174)
                          ++++|+.+|+++++++|++.                     .|+++++++|.++..+.+.+.+.....
T Consensus        73 ----~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l~  140 (144)
T PRK15359         73 ----EYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMVD  140 (144)
T ss_pred             ----hHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Confidence                99999999999999999886                     677888888888888888877766543

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.56  E-value=5.5e-14  Score=103.16  Aligned_cols=100  Identities=17%  Similarity=0.175  Sum_probs=93.0

Q ss_pred             HHhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 030634            8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT   87 (174)
Q Consensus         8 ~~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~   87 (174)
                      |-+.+.+++|+..+++++..+|.++.++.++|.++..+|++          ++|+..|+++++++|+++..++++|.++.
T Consensus        27 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~----------~~A~~~~~~~~~~~p~~~~~~~~la~~~~   96 (135)
T TIGR02552        27 LYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEY----------EEAIDAYALAAALDPDDPRPYFHAAECLL   96 (135)
T ss_pred             HHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence            45678899999999999999999999999999999999999          99999999999999999999999999999


Q ss_pred             hCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCHHHHHHHh
Q 030634           88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLE  128 (174)
Q Consensus        88 ~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~~y~~Al~  128 (174)
                      ..|           ++++|+..|+++++++|++..+....+
T Consensus        97 ~~g-----------~~~~A~~~~~~al~~~p~~~~~~~~~~  126 (135)
T TIGR02552        97 ALG-----------EPESALKALDLAIEICGENPEYSELKE  126 (135)
T ss_pred             HcC-----------CHHHHHHHHHHHHHhccccchHHHHHH
Confidence            999           999999999999999999986554443

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.54  E-value=1.3e-13  Score=131.37  Aligned_cols=129  Identities=12%  Similarity=0.120  Sum_probs=94.8

Q ss_pred             HHhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 030634            8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT   87 (174)
Q Consensus         8 ~~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~   87 (174)
                      +.++|++++|+..+++++.++|+++.++.++|.++...|++          ++|+..|+++++++|+++.+++++|.++.
T Consensus       619 l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~----------eeAi~~l~~AL~l~P~~~~a~~nLA~al~  688 (987)
T PRK09782        619 YRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDI----------AQSREMLERAHKGLPDDPALIRQLAYVNQ  688 (987)
T ss_pred             HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            44566666677777777777777777777777777666666          88888888888888888888888888888


Q ss_pred             hCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHhcCCCChHHHHHHHHHHHh
Q 030634           88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELHKHGIN  146 (174)
Q Consensus        88 ~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~---------------------~y~~Al~l~~~~~~~~~~l~~~~~~  146 (174)
                      .+|           ++++|+.+|+++++++|++.                     .|.++..++|... +....|.+++.
T Consensus       689 ~lG-----------d~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~~-a~~~~g~~~~~  756 (987)
T PRK09782        689 RLD-----------DMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDSS-IGLRSGAMSTA  756 (987)
T ss_pred             HCC-----------CHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccch-hccccchHhhh
Confidence            877           88888888888888888876                     3455557777777 77777777777


Q ss_pred             ccccCCC-Cchhh
Q 030634          147 QQTLGGG-SSASS  158 (174)
Q Consensus       147 ~~~~~~~-~~~~~  158 (174)
                      ++-.++. |-.++
T Consensus       757 ~~~~~~~~~~~~~  769 (987)
T PRK09782        757 NNNVGGAAPGKSY  769 (987)
T ss_pred             cccccCCCCCcch
Confidence            7776555 55555

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.52  E-value=4e-13  Score=106.75  Aligned_cols=91  Identities=13%  Similarity=0.201  Sum_probs=81.6

Q ss_pred             hhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-Hh
Q 030634           10 RLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAH-TS   88 (174)
Q Consensus        10 ~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~-~~   88 (174)
                      .....++++..++++++.+|++++.|..+|.++...|++          ++|+.+|+++++++|+++.++.++|.++ ..
T Consensus        51 ~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~----------~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~  120 (198)
T PRK10370         51 SQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDY----------DNALLAYRQALQLRGENAELYAALATVLYYQ  120 (198)
T ss_pred             CchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence            456778999999999999999999999999999999999          9999999999999999999999999985 56


Q ss_pred             CCCCccchhhhhcC--HHHHHHHHHHHHHhCCCCH
Q 030634           89 CGFLTADLSEAKGD--FDKASECFQRAVDEEPTNE  121 (174)
Q Consensus        89 lG~~~~~~~~a~~~--~~~Ai~~~~kAl~l~P~~~  121 (174)
                      .|           +  +++|...++++++++|++.
T Consensus       121 ~g-----------~~~~~~A~~~l~~al~~dP~~~  144 (198)
T PRK10370        121 AG-----------QHMTPQTREMIDKALALDANEV  144 (198)
T ss_pred             cC-----------CCCcHHHHHHHHHHHHhCCCCh
Confidence            66           5  6999999999888888775

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.52  E-value=1.2e-12  Score=101.05  Aligned_cols=123  Identities=17%  Similarity=0.241  Sum_probs=111.0

Q ss_pred             hHHhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 030634            7 DFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAH   86 (174)
Q Consensus         7 ~~~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~   86 (174)
                      .|-..+.+++|+..++++++.+|+++.++..+|.++...|++          ++|+..++++++++|+++.+++++|.++
T Consensus        40 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~----------~~A~~~~~~al~~~~~~~~~~~~~~~~~  109 (234)
T TIGR02521        40 GYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGEL----------EKAEDSFRRALTLNPNNGDVLNNYGTFL  109 (234)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence            355678999999999999999999999999999999999999          9999999999999999999999999999


Q ss_pred             HhCCCCccchhhhhcCHHHHHHHHHHHHHhCC--CCH---------------------HHHHHHhcCCCChHHHHHHHHH
Q 030634           87 TSCGFLTADLSEAKGDFDKASECFQRAVDEEP--TNE---------------------LYQKSLEVSTKAPELHMELHKH  143 (174)
Q Consensus        87 ~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P--~~~---------------------~y~~Al~l~~~~~~~~~~l~~~  143 (174)
                      ...|           ++++|+.+|+++++..+  ...                     .+.++++.+|..+..+..++.+
T Consensus       110 ~~~g-----------~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~  178 (234)
T TIGR02521       110 CQQG-----------KYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAEL  178 (234)
T ss_pred             HHcc-----------cHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHH
Confidence            9998           99999999999998643  221                     6778888999999999999999


Q ss_pred             HHhcccc
Q 030634          144 GINQQTL  150 (174)
Q Consensus       144 ~~~~~~~  150 (174)
                      +..+|..
T Consensus       179 ~~~~~~~  185 (234)
T TIGR02521       179 YYLRGQY  185 (234)
T ss_pred             HHHcCCH
Confidence            9988876

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.52  E-value=2.4e-13  Score=116.81  Aligned_cols=97  Identities=16%  Similarity=0.193  Sum_probs=91.3

Q ss_pred             HHhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 030634            8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT   87 (174)
Q Consensus         8 ~~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~   87 (174)
                      .-..+.|++|+..|.++++++|+++.+++++|.++..+|++          ++|+..++++++++|+++.+|+.+|.++.
T Consensus        12 a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~----------~eAl~~~~~Al~l~P~~~~a~~~lg~~~~   81 (356)
T PLN03088         12 AFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNF----------TEAVADANKAIELDPSLAKAYLRKGTACM   81 (356)
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence            34567999999999999999999999999999999999999          99999999999999999999999999999


Q ss_pred             hCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCHHHHH
Q 030634           88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQK  125 (174)
Q Consensus        88 ~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~~y~~  125 (174)
                      .+|           +|++|+.+|+++++++|++..+..
T Consensus        82 ~lg-----------~~~eA~~~~~~al~l~P~~~~~~~  108 (356)
T PLN03088         82 KLE-----------EYQTAKAALEKGASLAPGDSRFTK  108 (356)
T ss_pred             HhC-----------CHHHHHHHHHHHHHhCCCCHHHHH
Confidence            999           999999999999999999984433

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.51  E-value=1.7e-13  Score=105.10  Aligned_cols=92  Identities=15%  Similarity=0.126  Sum_probs=87.2

Q ss_pred             hHHhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 030634            7 DFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAH   86 (174)
Q Consensus         7 ~~~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~   86 (174)
                      .+-+.|++++|.+.|+-++.+||.++..|++||.++..+|++          ++||.+|.+|+.++|+++.+++++|.|+
T Consensus        44 ~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~----------~~AI~aY~~A~~L~~ddp~~~~~ag~c~  113 (157)
T PRK15363         44 QLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHW----------GEAIYAYGRAAQIKIDAPQAPWAAAECY  113 (157)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhH----------HHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence            355788999999999999999999999999999999999999          9999999999999999999999999999


Q ss_pred             HhCCCCccchhhhhcCHHHHHHHHHHHHHhCCC
Q 030634           87 TSCGFLTADLSEAKGDFDKASECFQRAVDEEPT  119 (174)
Q Consensus        87 ~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~  119 (174)
                      ..+|           +.+.|.++|+.|+..--+
T Consensus       114 L~lG-----------~~~~A~~aF~~Ai~~~~~  135 (157)
T PRK15363        114 LACD-----------NVCYAIKALKAVVRICGE  135 (157)
T ss_pred             HHcC-----------CHHHHHHHHHHHHHHhcc
Confidence            9999           999999999999988633

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.49  E-value=2.2e-13  Score=89.53  Aligned_cols=68  Identities=28%  Similarity=0.518  Sum_probs=65.1

Q ss_pred             CCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCccchhhhhcC-HHHHHH
Q 030634           30 LDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGD-FDKASE  108 (174)
Q Consensus        30 ~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~~~~~~~~a~~~-~~~Ai~  108 (174)
                      .++.+|..+|.++...|++          ++|+..|+++++++|+++.+|+++|.++..+|           + +++|+.
T Consensus         1 e~a~~~~~~g~~~~~~~~~----------~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~-----------~~~~~A~~   59 (69)
T PF13414_consen    1 ENAEAWYNLGQIYFQQGDY----------EEAIEYFEKAIELDPNNAEAYYNLGLAYMKLG-----------KDYEEAIE   59 (69)
T ss_dssp             TSHHHHHHHHHHHHHTTHH----------HHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTT-----------THHHHHHH
T ss_pred             CHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC-----------ccHHHHHH
Confidence            3689999999999999999          99999999999999999999999999999987           5 999999


Q ss_pred             HHHHHHHhCC
Q 030634          109 CFQRAVDEEP  118 (174)
Q Consensus       109 ~~~kAl~l~P  118 (174)
                      +++++++++|
T Consensus        60 ~~~~al~l~P   69 (69)
T PF13414_consen   60 DFEKALKLDP   69 (69)
T ss_dssp             HHHHHHHHST
T ss_pred             HHHHHHHcCc
Confidence            9999999999

...

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.48  E-value=1.8e-12  Score=119.19  Aligned_cols=152  Identities=7%  Similarity=-0.064  Sum_probs=116.2

Q ss_pred             hhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhC
Q 030634           10 RLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSC   89 (174)
Q Consensus        10 ~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~l   89 (174)
                      ..|.+++|+..+++++..+|+++.++..+|.++...|++          ++|+..|+++++++|+++.++..+|.++...
T Consensus        88 ~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~----------~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~  157 (656)
T PRK15174         88 ASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQY----------ATVADLAEQAWLAFSGNSQIFALHLRTLVLM  157 (656)
T ss_pred             hcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC
Confidence            467888999999999999999999999999999888888          8999999999999999999999999998888


Q ss_pred             CCC-------------ccchh---------hhhcCHHHHHHHHHHHHHhCCCCH----------------------HHHH
Q 030634           90 GFL-------------TADLS---------EAKGDFDKASECFQRAVDEEPTNE----------------------LYQK  125 (174)
Q Consensus        90 G~~-------------~~~~~---------~a~~~~~~Ai~~~~kAl~l~P~~~----------------------~y~~  125 (174)
                      |+.             .|+.+         ...|++++|+..++++++.+|...                      .|++
T Consensus       158 g~~~eA~~~~~~~~~~~P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~  237 (656)
T PRK15174        158 DKELQAISLARTQAQEVPPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGES  237 (656)
T ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            831             11111         224667777777777777665221                      5677


Q ss_pred             HHhcCCCChHHHHHHHHHHHhccccCC---------------CCchhhHHHHHHHHHhhhc
Q 030634          126 SLEVSTKAPELHMELHKHGINQQTLGG---------------GSSASSAQVNFCICVHQMK  171 (174)
Q Consensus       126 Al~l~~~~~~~~~~l~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~  171 (174)
                      +++++|+.+..+.+++.++..+|+...               .|+...++.|++.++.+.+
T Consensus       238 al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g  298 (656)
T PRK15174        238 ALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTG  298 (656)
T ss_pred             HHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCC
Confidence            778888888888888888888877532               2777778888877766543

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.48  E-value=5.7e-13  Score=105.84  Aligned_cols=96  Identities=14%  Similarity=0.107  Sum_probs=87.8

Q ss_pred             hHHhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHH-HHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 030634            7 DFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEAL-LELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNA   85 (174)
Q Consensus         7 ~~~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l-~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a   85 (174)
                      -|..++++++|+..++++++++|++++++..+|.++ ...|++        ..++|+..++++++++|+++.+++++|.+
T Consensus        82 ~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~--------~~~~A~~~l~~al~~dP~~~~al~~LA~~  153 (198)
T PRK10370         82 YYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQH--------MTPQTREMIDKALALDANEVTALMLLASD  153 (198)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCC--------CcHHHHHHHHHHHHhCCCChhHHHHHHHH
Confidence            467889999999999999999999999999999986 566662        01899999999999999999999999999


Q ss_pred             HHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634           86 HTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (174)
Q Consensus        86 ~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~  121 (174)
                      +...|           ++++|+.+++++++++|.+.
T Consensus       154 ~~~~g-----------~~~~Ai~~~~~aL~l~~~~~  178 (198)
T PRK10370        154 AFMQA-----------DYAQAIELWQKVLDLNSPRV  178 (198)
T ss_pred             HHHcC-----------CHHHHHHHHHHHHhhCCCCc
Confidence            99999           99999999999999999766

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.47  E-value=1.6e-12  Score=104.91  Aligned_cols=121  Identities=18%  Similarity=0.204  Sum_probs=112.6

Q ss_pred             HHhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 030634            8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT   87 (174)
Q Consensus         8 ~~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~   87 (174)
                      |=+.|.+..|.+-+++|++.||++..+|..++.+|...|+.          +.|-+.|++|++++|++.+++.|.|.-++
T Consensus        45 YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~----------~~A~e~YrkAlsl~p~~GdVLNNYG~FLC  114 (250)
T COG3063          45 YLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGEN----------DLADESYRKALSLAPNNGDVLNNYGAFLC  114 (250)
T ss_pred             HHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCh----------hhHHHHHHHHHhcCCCccchhhhhhHHHH
Confidence            55678999999999999999999999999999999999998          99999999999999999999999999999


Q ss_pred             hCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH------------------------HHHHHHhcCCCChHHHHHHHHH
Q 030634           88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE------------------------LYQKSLEVSTKAPELHMELHKH  143 (174)
Q Consensus        88 ~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~------------------------~y~~Al~l~~~~~~~~~~l~~~  143 (174)
                      .+|           +|++|...|++|+. +|...                        .|+++|+++|+.|.....++..
T Consensus       115 ~qg-----------~~~eA~q~F~~Al~-~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~  182 (250)
T COG3063         115 AQG-----------RPEEAMQQFERALA-DPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARL  182 (250)
T ss_pred             hCC-----------ChHHHHHHHHHHHh-CCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHH
Confidence            999           99999999999987 45443                        7899999999999999999999


Q ss_pred             HHhcccc
Q 030634          144 GINQQTL  150 (174)
Q Consensus       144 ~~~~~~~  150 (174)
                      .+.-|..
T Consensus       183 ~~~~~~y  189 (250)
T COG3063         183 HYKAGDY  189 (250)
T ss_pred             HHhcccc
Confidence            9988877

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.46  E-value=1.3e-12  Score=124.74  Aligned_cols=115  Identities=15%  Similarity=0.134  Sum_probs=74.1

Q ss_pred             hhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCC
Q 030634           12 LLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGF   91 (174)
Q Consensus        12 ~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~   91 (174)
                      |++++|+..++++++++|+ +.++.++|.++..+|++          ++|+..|+++++++|+++.++.++|.++...| 
T Consensus       590 Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~----------deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G-  657 (987)
T PRK09782        590 GQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNV----------PAAVSDLRAALELEPNNSNYQAALGYALWDSG-  657 (987)
T ss_pred             CCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC-
Confidence            6666666666666666664 66666666666666666          66666666666666666666666666666666 


Q ss_pred             CccchhhhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHhcCCCChHHHHHHHHHHHhcc
Q 030634           92 LTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELHKHGINQQ  148 (174)
Q Consensus        92 ~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~---------------------~y~~Al~l~~~~~~~~~~l~~~~~~~~  148 (174)
                                ++++|+.+|+++++++|++.                     .|++++++.|.........+.+...+.
T Consensus       658 ----------~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~  725 (987)
T PRK09782        658 ----------DIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRF  725 (987)
T ss_pred             ----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHH
Confidence                      66666666666666666665                     456666666666555555555554444

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.46  E-value=2.4e-12  Score=118.41  Aligned_cols=125  Identities=12%  Similarity=0.035  Sum_probs=87.1

Q ss_pred             HhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 030634            9 DRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTS   88 (174)
Q Consensus         9 ~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~   88 (174)
                      -+++++++|+..+++++..+|+++.+++++|.++...|++.+      ...+|+..|+++++++|+++.++.++|.++..
T Consensus       223 ~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~e------A~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~  296 (656)
T PRK15174        223 CAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSRE------AKLQAAEHWRHALQFNSDNVRIVTLYADALIR  296 (656)
T ss_pred             HHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchh------hHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Confidence            346677777777777777777777777777777777777710      00137777777777777777777777777777


Q ss_pred             CCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHhcCCCChHHHHHHHHHHHhc
Q 030634           89 CGFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELHKHGINQ  147 (174)
Q Consensus        89 lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~---------------------~y~~Al~l~~~~~~~~~~l~~~~~~~  147 (174)
                      .|           ++++|+.+++++++++|++.                     .|+++++.+|..+..+..++.++..+
T Consensus       297 ~g-----------~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~  365 (656)
T PRK15174        297 TG-----------QNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQA  365 (656)
T ss_pred             CC-----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHC
Confidence            77           77777777777777777766                     45556666666666555566666555


Q ss_pred             ccc
Q 030634          148 QTL  150 (174)
Q Consensus       148 ~~~  150 (174)
                      |+.
T Consensus       366 G~~  368 (656)
T PRK15174        366 GKT  368 (656)
T ss_pred             CCH
Confidence            554

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.45  E-value=3e-12  Score=124.08  Aligned_cols=142  Identities=17%  Similarity=0.249  Sum_probs=121.7

Q ss_pred             hHHhhhhHHHHHHHHHHHHhhCCCCHHH--------------HHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhC
Q 030634            7 DFDRLLLSEHNRKTAEANYAKDPLDADN--------------LTRWGEALLELSQFESVSDSKKIINEAISKFEEALVID   72 (174)
Q Consensus         7 ~~~~~~~~~eAl~~~~~al~~~P~~~~a--------------~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ld   72 (174)
                      -|.+++++++|+..++++++++|++...              ...+|.++...|++          ++|+..|+++++++
T Consensus       312 ~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~----------~eA~~~~~~Al~~~  381 (1157)
T PRK11447        312 AYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNL----------AQAERLYQQARQVD  381 (1157)
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHhC
Confidence            3668899999999999999999987532              23447777888887          99999999999999


Q ss_pred             CCCHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH-------------------------------
Q 030634           73 PAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE-------------------------------  121 (174)
Q Consensus        73 P~~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~-------------------------------  121 (174)
                      |+++.+++.||.++...|           ++++|+.+|+++++++|++.                               
T Consensus       382 P~~~~a~~~Lg~~~~~~g-----------~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~  450 (1157)
T PRK11447        382 NTDSYAVLGLGDVAMARK-----------DYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRR  450 (1157)
T ss_pred             CCCHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHH
Confidence            999999999999999999           99999999999999999864                               


Q ss_pred             --------------------------------HHHHHHhcCCCChHHHHHHHHHHHhcccc-----------CCCCchhh
Q 030634          122 --------------------------------LYQKSLEVSTKAPELHMELHKHGINQQTL-----------GGGSSASS  158 (174)
Q Consensus       122 --------------------------------~y~~Al~l~~~~~~~~~~l~~~~~~~~~~-----------~~~~~~~~  158 (174)
                                                      .|+++++++|+++.++.+++.++..+|+.           ...|...+
T Consensus       451 ~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~  530 (1157)
T PRK11447        451 SIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPE  530 (1157)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Confidence                                            35667788999999999999999998887           23488888


Q ss_pred             HHHHHHHHHhh
Q 030634          159 AQVNFCICVHQ  169 (174)
Q Consensus       159 ~~~~~~~~~~~  169 (174)
                      ++++.++.+..
T Consensus       531 ~~~a~al~l~~  541 (1157)
T PRK11447        531 QVYAYGLYLSG  541 (1157)
T ss_pred             HHHHHHHHHHh
Confidence            88888876543

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.42  E-value=1e-11  Score=113.04  Aligned_cols=139  Identities=17%  Similarity=0.206  Sum_probs=108.3

Q ss_pred             HHhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 030634            8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT   87 (174)
Q Consensus         8 ~~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~   87 (174)
                      |.+.|.+++|++.+++++...|++ ..+..+|.++...|++          ++|+..++++++.+|+++.+++.+|.++.
T Consensus       713 ~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~----------~~A~~~~~~~l~~~~~~~~~~~~la~~~~  781 (899)
T TIGR02917       713 YLRQKDYPAAIQAYRKALKRAPSS-QNAIKLHRALLASGNT----------AEAVKTLEAWLKTHPNDAVLRTALAELYL  781 (899)
T ss_pred             HHHCCCHHHHHHHHHHHHhhCCCc-hHHHHHHHHHHHCCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            345567777777777777777766 5666777777777776          88888888888888888888888888888


Q ss_pred             hCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH--------------------HHHHHHhcCCCChHHHHHHHHHHHhc
Q 030634           88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE--------------------LYQKSLEVSTKAPELHMELHKHGINQ  147 (174)
Q Consensus        88 ~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~--------------------~y~~Al~l~~~~~~~~~~l~~~~~~~  147 (174)
                      ..|           ++++|+.+|+++++.+|++.                    .+++++++.|..+..+.+++.++..+
T Consensus       782 ~~g-----------~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~  850 (899)
T TIGR02917       782 AQK-----------DYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKDPRALEYAEKALKLAPNIPAILDTLGWLLVEK  850 (899)
T ss_pred             HCc-----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHc
Confidence            888           88888888888888888876                    46677788888888888888888888


Q ss_pred             ccc-----------CCCCchhhHHHHHHHHHh
Q 030634          148 QTL-----------GGGSSASSAQVNFCICVH  168 (174)
Q Consensus       148 ~~~-----------~~~~~~~~~~~~~~~~~~  168 (174)
                      |+.           ...|+..++..|.+.++-
T Consensus       851 g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~  882 (899)
T TIGR02917       851 GEADRALPLLRKAVNIAPEAAAIRYHLALALL  882 (899)
T ss_pred             CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Confidence            776           333777778877776654

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.42  E-value=3.9e-12  Score=111.06  Aligned_cols=122  Identities=18%  Similarity=0.201  Sum_probs=104.4

Q ss_pred             HHhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 030634            8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT   87 (174)
Q Consensus         8 ~~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~   87 (174)
                      |--.+..+.|+..+++|+++||+...+|..+|.=+.++++.          ..||..|++|++++|.|..|||.||.+|.
T Consensus       340 YSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt----------~AAi~sYRrAvdi~p~DyRAWYGLGQaYe  409 (559)
T KOG1155|consen  340 YSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNT----------HAAIESYRRAVDINPRDYRAWYGLGQAYE  409 (559)
T ss_pred             HHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhccc----------HHHHHHHHHHHhcCchhHHHHhhhhHHHH
Confidence            34456889999999999999999999999999999999998          99999999999999999999999999999


Q ss_pred             hCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHhcCCCChHHHHHHHHHHHh
Q 030634           88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELHKHGIN  146 (174)
Q Consensus        88 ~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~---------------------~y~~Al~l~~~~~~~~~~l~~~~~~  146 (174)
                      .++           -..=|+.+|+||+++.|++.                     +|++|+....-....+..||+++..
T Consensus       410 im~-----------Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~  478 (559)
T KOG1155|consen  410 IMK-----------MHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEE  478 (559)
T ss_pred             Hhc-----------chHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence            988           88889999999888888877                     6666666666666666667666666


Q ss_pred             cccc
Q 030634          147 QQTL  150 (174)
Q Consensus       147 ~~~~  150 (174)
                      .+..
T Consensus       479 l~d~  482 (559)
T KOG1155|consen  479 LKDL  482 (559)
T ss_pred             HHhH
Confidence            5544

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.42  E-value=5.8e-12  Score=100.77  Aligned_cols=152  Identities=11%  Similarity=0.092  Sum_probs=115.8

Q ss_pred             hHHhhhhHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHH---HHH
Q 030634            7 DFDRLLLSEHNRKTAEANYAKDPLDA---DNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHY---TLW   80 (174)
Q Consensus         7 ~~~~~~~~~eAl~~~~~al~~~P~~~---~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~---a~~   80 (174)
                      .+-+.+.|++|+..+++++..+|+++   .+++.+|.++...|++          ++|+..|+++++.+|+++.   +++
T Consensus        42 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~----------~~A~~~~~~~l~~~p~~~~~~~a~~  111 (235)
T TIGR03302        42 EALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDY----------AEAIAAADRFIRLHPNHPDADYAYY  111 (235)
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCH----------HHHHHHHHHHHHHCcCCCchHHHHH
Confidence            35567899999999999999999986   6889999999999999          9999999999999999887   799


Q ss_pred             HHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCHHHHHHHh----cCCCChHHHHHHHHHHHhcccc------
Q 030634           81 SLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLE----VSTKAPELHMELHKHGINQQTL------  150 (174)
Q Consensus        81 ~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~~y~~Al~----l~~~~~~~~~~l~~~~~~~~~~------  150 (174)
                      .+|.++....   +......+++++|+..|+++++.+|++....+++.    ...........++..+..+|+.      
T Consensus       112 ~~g~~~~~~~---~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~  188 (235)
T TIGR03302       112 LRGLSNYNQI---DRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINR  188 (235)
T ss_pred             HHHHHHHHhc---ccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence            9999998751   01111123899999999999999999985544432    1111123345677777777766      


Q ss_pred             --------CCCCchhhHHHHHHHHHhhhc
Q 030634          151 --------GGGSSASSAQVNFCICVHQMK  171 (174)
Q Consensus       151 --------~~~~~~~~~~~~~~~~~~~~~  171 (174)
                              ...|...+++++.+.+...++
T Consensus       189 ~~~al~~~p~~~~~~~a~~~l~~~~~~lg  217 (235)
T TIGR03302       189 FETVVENYPDTPATEEALARLVEAYLKLG  217 (235)
T ss_pred             HHHHHHHCCCCcchHHHHHHHHHHHHHcC
Confidence                    123566788888887766554

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.41  E-value=7.4e-12  Score=88.90  Aligned_cols=100  Identities=18%  Similarity=0.171  Sum_probs=92.0

Q ss_pred             HHhhhhHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCC---HHHHHH
Q 030634            8 FDRLLLSEHNRKTAEANYAKDPLD---ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAK---HYTLWS   81 (174)
Q Consensus         8 ~~~~~~~~eAl~~~~~al~~~P~~---~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~---~~a~~~   81 (174)
                      +-+++.+++|++.+.+++..+|++   +.+++.+|.++...|++          ++|+..|++++..+|++   +.+++.
T Consensus        12 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~A~~~~~~~~~~~p~~~~~~~~~~~   81 (119)
T TIGR02795        12 VLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKY----------ADAAKAFLAVVKKYPKSPKAPDALLK   81 (119)
T ss_pred             HHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccH----------HHHHHHHHHHHHHCCCCCcccHHHHH
Confidence            556789999999999999999987   68999999999999999          99999999999999986   678999


Q ss_pred             HHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCHHHHHHHh
Q 030634           82 LGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLE  128 (174)
Q Consensus        82 LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~~y~~Al~  128 (174)
                      +|.++..+|           ++++|+.+++++++..|++.....+..
T Consensus        82 ~~~~~~~~~-----------~~~~A~~~~~~~~~~~p~~~~~~~~~~  117 (119)
T TIGR02795        82 LGMSLQELG-----------DKEKAKATLQQVIKRYPGSSAAKLAQK  117 (119)
T ss_pred             HHHHHHHhC-----------ChHHHHHHHHHHHHHCcCChhHHHHHh
Confidence            999999998           999999999999999999987777654

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PLN02789 farnesyltranstransferase

Probab=99.41  E-value=7.9e-12  Score=106.20  Aligned_cols=143  Identities=10%  Similarity=-0.035  Sum_probs=107.3

Q ss_pred             HHhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc-CcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 030634            8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELS-QFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAH   86 (174)
Q Consensus         8 ~~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g-~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~   86 (174)
                      +..++++++|+..+.+++.++|.+.++|..+|.++..+| .+          ++|+..++++++.+|++..+|+.+|.++
T Consensus        47 l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l----------~eeL~~~~~~i~~npknyqaW~~R~~~l  116 (320)
T PLN02789         47 YASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADL----------EEELDFAEDVAEDNPKNYQIWHHRRWLA  116 (320)
T ss_pred             HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhH----------HHHHHHHHHHHHHCCcchHHhHHHHHHH
Confidence            344567888999999999999999999999999988877 35          7888888888888888888888888888


Q ss_pred             HhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHhcCCCChHHHHHHHHHHH
Q 030634           87 TSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELHKHGI  145 (174)
Q Consensus        87 ~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~---------------------~y~~Al~l~~~~~~~~~~l~~~~~  145 (174)
                      ..+|         ...+++++.++.+++++||+|.                     .+.++++.+|....++.+.+.++.
T Consensus       117 ~~l~---------~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~  187 (320)
T PLN02789        117 EKLG---------PDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVIT  187 (320)
T ss_pred             HHcC---------chhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHH
Confidence            7777         1123677888888888888775                     556777788888888877777765


Q ss_pred             hcccc------------------CCCCchhhHHHHHHHHHhh
Q 030634          146 NQQTL------------------GGGSSASSAQVNFCICVHQ  169 (174)
Q Consensus       146 ~~~~~------------------~~~~~~~~~~~~~~~~~~~  169 (174)
                      ..+.+                  -..|...|+.++.+.++..
T Consensus       188 ~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~  229 (320)
T PLN02789        188 RSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKD  229 (320)
T ss_pred             hccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhc
Confidence            43211                  1237777777777777665

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.40  E-value=1.9e-11  Score=111.20  Aligned_cols=154  Identities=15%  Similarity=0.145  Sum_probs=107.5

Q ss_pred             HHhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 030634            8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT   87 (174)
Q Consensus         8 ~~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~   87 (174)
                      |.+++.+++|+..++++++.+|.++.++..+|.++...|++          ++|+..|+++++++|++..+++.++.++.
T Consensus       611 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  680 (899)
T TIGR02917       611 QLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNY----------AKAITSLKRALELKPDNTEAQIGLAQLLL  680 (899)
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCH----------HHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            55667777788888887777777777777788777777777          77777777777777776666666666665


Q ss_pred             hCCCC-------------c----------cchhhhhcCHHHHHHHHHHHHHhCCCCH--------------------HHH
Q 030634           88 SCGFL-------------T----------ADLSEAKGDFDKASECFQRAVDEEPTNE--------------------LYQ  124 (174)
Q Consensus        88 ~lG~~-------------~----------~~~~~a~~~~~~Ai~~~~kAl~l~P~~~--------------------~y~  124 (174)
                      ..|+.             .          +......|++++|+..|+++++.+|++.                    .++
T Consensus       681 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  760 (899)
T TIGR02917       681 AAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLE  760 (899)
T ss_pred             HcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHH
Confidence            55521             0          1112234588888888888888888764                    456


Q ss_pred             HHHhcCCCChHHHHHHHHHHHhcccc-----------CCCCchhhHHHHHHHHHhhhc
Q 030634          125 KSLEVSTKAPELHMELHKHGINQQTL-----------GGGSSASSAQVNFCICVHQMK  171 (174)
Q Consensus       125 ~Al~l~~~~~~~~~~l~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~  171 (174)
                      ++++..|.++.++..++.++..+|+.           ...|+...++.|++......+
T Consensus       761 ~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~  818 (899)
T TIGR02917       761 AWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELK  818 (899)
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence            66777888888888888888877776           234777777777776665543

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.39  E-value=1.2e-11  Score=119.81  Aligned_cols=117  Identities=20%  Similarity=0.250  Sum_probs=104.6

Q ss_pred             HHhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHH---------
Q 030634            8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYT---------   78 (174)
Q Consensus         8 ~~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a---------   78 (174)
                      +-.++++++|+..++++++++|++++++..+|.++...|++          ++|+..|+++++++|++...         
T Consensus       279 ~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~----------~eA~~~l~~Al~~~p~~~~~~~~~~ll~~  348 (1157)
T PRK11447        279 AVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDR----------ARAVAQFEKALALDPHSSNRDKWESLLKV  348 (1157)
T ss_pred             HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCccchhHHHHHHHh
Confidence            34568999999999999999999999999999999999999          99999999999999987642         


Q ss_pred             -----HHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHhcCCC
Q 030634           79 -----LWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTK  132 (174)
Q Consensus        79 -----~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~---------------------~y~~Al~l~~~  132 (174)
                           ...+|.++...|           ++++|+.+|+++++++|++.                     .|+++++++|.
T Consensus       349 ~~~~~~~~~g~~~~~~g-----------~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~  417 (1157)
T PRK11447        349 NRYWLLIQQGDAALKAN-----------NLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG  417 (1157)
T ss_pred             hhHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence                 235578888888           99999999999999999987                     78999999999


Q ss_pred             ChHHHHHHHHHHH
Q 030634          133 APELHMELHKHGI  145 (174)
Q Consensus       133 ~~~~~~~l~~~~~  145 (174)
                      .+.++.+++.++.
T Consensus       418 ~~~a~~~L~~l~~  430 (1157)
T PRK11447        418 NTNAVRGLANLYR  430 (1157)
T ss_pred             CHHHHHHHHHHHH
Confidence            9998888877764

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.39  E-value=2.4e-11  Score=93.76  Aligned_cols=122  Identities=20%  Similarity=0.278  Sum_probs=101.7

Q ss_pred             hHHhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHH
Q 030634            7 DFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVID--PAKHYTLWSLGN   84 (174)
Q Consensus         7 ~~~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ld--P~~~~a~~~LG~   84 (174)
                      -|-+++.+++|++.++++++.+|.++.++.++|.++...|++          ++|+..|++++...  |.....++++|.
T Consensus        74 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~----------~~A~~~~~~~~~~~~~~~~~~~~~~l~~  143 (234)
T TIGR02521        74 YYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKY----------EQAMQQFEQAIEDPLYPQPARSLENAGL  143 (234)
T ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccH----------HHHHHHHHHHHhccccccchHHHHHHHH
Confidence            356778999999999999999999999999999999999998          99999999999853  567788999999


Q ss_pred             HHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHhcCCCChHHHHHHHHH
Q 030634           85 AHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELHKH  143 (174)
Q Consensus        85 a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~---------------------~y~~Al~l~~~~~~~~~~l~~~  143 (174)
                      ++...|           ++++|+.+++++++.+|++.                     .++++++..|..+..+..++.+
T Consensus       144 ~~~~~g-----------~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~  212 (234)
T TIGR02521       144 CALKAG-----------DFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRI  212 (234)
T ss_pred             HHHHcC-----------CHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            999988           99999999999999999886                     4455556666666666656555


Q ss_pred             HHhccc
Q 030634          144 GINQQT  149 (174)
Q Consensus       144 ~~~~~~  149 (174)
                      +...|.
T Consensus       213 ~~~~~~  218 (234)
T TIGR02521       213 ARALGD  218 (234)
T ss_pred             HHHHhh
Confidence            554443

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.39  E-value=7.5e-12  Score=82.16  Aligned_cols=92  Identities=25%  Similarity=0.421  Sum_probs=87.0

Q ss_pred             hHHhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 030634            7 DFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAH   86 (174)
Q Consensus         7 ~~~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~   86 (174)
                      .+-+++.+++|+..++++++..|.++.++..+|.++...+++          ++|+..|++++++.|.+..+++.+|.++
T Consensus         9 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~a~~~~~~~~~~~~~~~~~~~~~~~~~   78 (100)
T cd00189           9 LYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKY----------EEALEDYEKALELDPDNAKAYYNLGLAY   78 (100)
T ss_pred             HHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHhCCCcchhHHHHHHHHH
Confidence            355688999999999999999999999999999999999998          9999999999999999999999999999


Q ss_pred             HhCCCCccchhhhhcCHHHHHHHHHHHHHhCCC
Q 030634           87 TSCGFLTADLSEAKGDFDKASECFQRAVDEEPT  119 (174)
Q Consensus        87 ~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~  119 (174)
                      ...|           ++++|..++.++++.+|+
T Consensus        79 ~~~~-----------~~~~a~~~~~~~~~~~~~  100 (100)
T cd00189          79 YKLG-----------KYEEALEAYEKALELDPN  100 (100)
T ss_pred             HHHH-----------hHHHHHHHHHHHHccCCC
Confidence            9988           999999999999999884

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.37  E-value=1.1e-11  Score=90.79  Aligned_cols=82  Identities=15%  Similarity=0.236  Sum_probs=76.4

Q ss_pred             HHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCccchhh
Q 030634           19 KTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSE   98 (174)
Q Consensus        19 ~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~~~~~~~~   98 (174)
                      ..+++++..+|+++.+.+.+|.++...|++          ++|+..|++++.++|+++.+|+++|.++...|        
T Consensus         4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~----------~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~--------   65 (135)
T TIGR02552         4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRY----------DEALKLFQLLAAYDPYNSRYWLGLAACCQMLK--------   65 (135)
T ss_pred             hhHHHHHcCChhhHHHHHHHHHHHHHcccH----------HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHH--------
Confidence            457889999999999999999999999999          99999999999999999999999999999988        


Q ss_pred             hhcCHHHHHHHHHHHHHhCCCCH
Q 030634           99 AKGDFDKASECFQRAVDEEPTNE  121 (174)
Q Consensus        99 a~~~~~~Ai~~~~kAl~l~P~~~  121 (174)
                         ++++|+.+++++++.+|++.
T Consensus        66 ---~~~~A~~~~~~~~~~~p~~~   85 (135)
T TIGR02552        66 ---EYEEAIDAYALAAALDPDDP   85 (135)
T ss_pred             ---HHHHHHHHHHHHHhcCCCCh
Confidence               99999999999888877654

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=99.37  E-value=2.8e-12  Score=83.45  Aligned_cols=65  Identities=31%  Similarity=0.513  Sum_probs=60.1

Q ss_pred             HHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHH
Q 030634           36 TRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVD  115 (174)
Q Consensus        36 ~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~  115 (174)
                      +.+|.+++..|++          ++|+.+|+++++.+|+++.+|+.+|.++..+|           ++++|+.+|+++++
T Consensus         1 ~~~a~~~~~~g~~----------~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g-----------~~~~A~~~~~~a~~   59 (65)
T PF13432_consen    1 YALARALYQQGDY----------DEAIAAFEQALKQDPDNPEAWYLLGRILYQQG-----------RYDEALAYYERALE   59 (65)
T ss_dssp             HHHHHHHHHCTHH----------HHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT------------HHHHHHHHHHHHH
T ss_pred             ChHHHHHHHcCCH----------HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHH
Confidence            4678999999998          99999999999999999999999999999999           99999999999999


Q ss_pred             hCCCCH
Q 030634          116 EEPTNE  121 (174)
Q Consensus       116 l~P~~~  121 (174)
                      ++|+++
T Consensus        60 ~~P~~p   65 (65)
T PF13432_consen   60 LDPDNP   65 (65)
T ss_dssp             HSTT-H
T ss_pred             HCcCCC
Confidence            999985

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.37  E-value=3.5e-12  Score=114.71  Aligned_cols=120  Identities=19%  Similarity=0.233  Sum_probs=110.5

Q ss_pred             hhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhC
Q 030634           10 RLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSC   89 (174)
Q Consensus        10 ~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~l   89 (174)
                      ....|+.|.+.|++|+..+|.+-.+|+.+|.+|.+++++          +.|.-+|++|+++||.+.-....+|.++..+
T Consensus       467 ~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~----------e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~  536 (638)
T KOG1126|consen  467 ATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKL----------EFAEFHFQKAVEINPSNSVILCHIGRIQHQL  536 (638)
T ss_pred             hhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchh----------hHHHHHHHhhhcCCccchhHHhhhhHHHHHh
Confidence            455899999999999999999999999999999999999          9999999999999999999999999999999


Q ss_pred             CCCccchhhhhcCHHHHHHHHHHHHHhCCCCH--------------HHHHHH-------hcCCCChHHHHHHHHHHHhcc
Q 030634           90 GFLTADLSEAKGDFDKASECFQRAVDEEPTNE--------------LYQKSL-------EVSTKAPELHMELHKHGINQQ  148 (174)
Q Consensus        90 G~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~--------------~y~~Al-------~l~~~~~~~~~~l~~~~~~~~  148 (174)
                      |           +.++|+.+|++|+-+||.++              .|.+||       ++.|+....|.-+|.++...|
T Consensus       537 k-----------~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~  605 (638)
T KOG1126|consen  537 K-----------RKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLG  605 (638)
T ss_pred             h-----------hhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHc
Confidence            8           99999999999999999998              334444       788999999999999998776


Q ss_pred             cc
Q 030634          149 TL  150 (174)
Q Consensus       149 ~~  150 (174)
                      .-
T Consensus       606 ~~  607 (638)
T KOG1126|consen  606 NT  607 (638)
T ss_pred             cc
Confidence            54

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.37  E-value=2.5e-11  Score=101.54  Aligned_cols=103  Identities=22%  Similarity=0.169  Sum_probs=93.2

Q ss_pred             hhHHHHHHHHHHHHhh---CCC-CHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 030634           12 LLSEHNRKTAEANYAK---DPL-DADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT   87 (174)
Q Consensus        12 ~~~~eAl~~~~~al~~---~P~-~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~   87 (174)
                      ...+.++..+.+++..   +|. .+..|+.+|.++...|++          ++|+..|+++++++|+++.+|+++|.++.
T Consensus        40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~----------~~A~~~~~~Al~l~P~~~~a~~~lg~~~~  109 (296)
T PRK11189         40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLR----------ALARNDFSQALALRPDMADAYNYLGIYLT  109 (296)
T ss_pred             hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            4678889999999964   444 478899999999999999          99999999999999999999999999999


Q ss_pred             hCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHhcCCCChH
Q 030634           88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPE  135 (174)
Q Consensus        88 ~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~---------------------~y~~Al~l~~~~~~  135 (174)
                      .+|           ++++|+..|+++++++|++.                     .++++++++|+++.
T Consensus       110 ~~g-----------~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~  167 (296)
T PRK11189        110 QAG-----------NFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPY  167 (296)
T ss_pred             HCC-----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence            999           99999999999999999987                     67888899999873

>PLN02789 farnesyltranstransferase

Probab=99.36  E-value=3e-11  Score=102.71  Aligned_cols=122  Identities=11%  Similarity=0.030  Sum_probs=108.2

Q ss_pred             Hhhh-hHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 030634            9 DRLL-LSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT   87 (174)
Q Consensus         9 ~~~~-~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~   87 (174)
                      ..++ .+++++..+.+++..+|++.++|++++.++..+|+.        .+++++..+++++++||++..+|..+|.++.
T Consensus        82 ~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~--------~~~~el~~~~kal~~dpkNy~AW~~R~w~l~  153 (320)
T PLN02789         82 EALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPD--------AANKELEFTRKILSLDAKNYHAWSHRQWVLR  153 (320)
T ss_pred             HHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCch--------hhHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            3455 589999999999999999999999999999888762        1267899999999999999999999999999


Q ss_pred             hCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH----------------------------HHHHHHhcCCCChHHHHH
Q 030634           88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE----------------------------LYQKSLEVSTKAPELHME  139 (174)
Q Consensus        88 ~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~----------------------------~y~~Al~l~~~~~~~~~~  139 (174)
                      .+|           ++++|++++.++|++||.|.                            ...+++.++|+...+|..
T Consensus       154 ~l~-----------~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Y  222 (320)
T PLN02789        154 TLG-----------GWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRY  222 (320)
T ss_pred             Hhh-----------hHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHH
Confidence            998           99999999999999999986                            234788999999999999


Q ss_pred             HHHHHHhccc
Q 030634          140 LHKHGINQQT  149 (174)
Q Consensus       140 l~~~~~~~~~  149 (174)
                      ++.++...++
T Consensus       223 l~~ll~~~~~  232 (320)
T PLN02789        223 LRGLFKDDKE  232 (320)
T ss_pred             HHHHHhcCCc
Confidence            9999988554

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.33  E-value=1.2e-11  Score=110.03  Aligned_cols=129  Identities=24%  Similarity=0.362  Sum_probs=105.5

Q ss_pred             hhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCC
Q 030634           12 LLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGF   91 (174)
Q Consensus        12 ~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~   91 (174)
                      |...+|.-+++.|+..+|.+.++|..||.+..+.++-          ..||..+++++++||++-+++..||..|...|.
T Consensus       299 G~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E----------~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~  368 (579)
T KOG1125|consen  299 GDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENE----------QNAISALRRCLELDPTNLEALMALAVSYTNEGL  368 (579)
T ss_pred             CCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccch----------HHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh
Confidence            4578899999999999999999999999999998776          899999999999999999999999999988871


Q ss_pred             --------------------Cc---------------------------------------cchh-------hhhcCHHH
Q 030634           92 --------------------LT---------------------------------------ADLS-------EAKGDFDK  105 (174)
Q Consensus        92 --------------------~~---------------------------------------~~~~-------~a~~~~~~  105 (174)
                                          ++                                       |++.       --.++|++
T Consensus       369 q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr  448 (579)
T KOG1125|consen  369 QNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR  448 (579)
T ss_pred             HHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence                                00                                       1111       11455788


Q ss_pred             HHHHHHHHHHhCCCCH---------------------HHHHHHhcCCCChHHHHHHHHHHHhcccc
Q 030634          106 ASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELHKHGINQQTL  150 (174)
Q Consensus       106 Ai~~~~kAl~l~P~~~---------------------~y~~Al~l~~~~~~~~~~l~~~~~~~~~~  150 (174)
                      |++||+.||..+|+|.                     .|++|+++-|..+.+++|||...+++|--
T Consensus       449 aiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~y  514 (579)
T KOG1125|consen  449 AVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAY  514 (579)
T ss_pred             HHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhH
Confidence            8888888888888877                     67888888888888888888877777643

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.31  E-value=3.7e-11  Score=98.96  Aligned_cols=122  Identities=19%  Similarity=0.222  Sum_probs=83.4

Q ss_pred             HHhhhhHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 030634            8 FDRLLLSEHNRKTAEANYAKD--PLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNA   85 (174)
Q Consensus         8 ~~~~~~~~eAl~~~~~al~~~--P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a   85 (174)
                      |.+.+.++++...+.++....  |.++..|..+|.++...|+.          ++|+.+|+++++++|+++.++..++.+
T Consensus       120 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~----------~~A~~~~~~al~~~P~~~~~~~~l~~~  189 (280)
T PF13429_consen  120 YYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDP----------DKALRDYRKALELDPDDPDARNALAWL  189 (280)
T ss_dssp             HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHH----------HHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred             HHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence            566677777777777766544  66778888888888887777          888888888888888888888888888


Q ss_pred             HHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHhcCCCChHHHHHHHHHH
Q 030634           86 HTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELHKHG  144 (174)
Q Consensus        86 ~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~---------------------~y~~Al~l~~~~~~~~~~l~~~~  144 (174)
                      +...|           +++++.+.+++..+..|+++                     .|++++..+|++|....+++.++
T Consensus       190 li~~~-----------~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l  258 (280)
T PF13429_consen  190 LIDMG-----------DYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADAL  258 (280)
T ss_dssp             HCTTC-----------HHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHH
T ss_pred             HHHCC-----------ChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccccccccccccc
Confidence            88777           77777777766666665554                     66777777888888888888888


Q ss_pred             Hhcccc
Q 030634          145 INQQTL  150 (174)
Q Consensus       145 ~~~~~~  150 (174)
                      ...|+.
T Consensus       259 ~~~g~~  264 (280)
T PF13429_consen  259 EQAGRK  264 (280)
T ss_dssp             T-----
T ss_pred             cccccc
Confidence            777765

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.30  E-value=4.1e-11  Score=91.96  Aligned_cols=104  Identities=16%  Similarity=0.050  Sum_probs=83.7

Q ss_pred             HHhhhhHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 030634            8 FDRLLLSEHNRKTAEANYAKDPLD---ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGN   84 (174)
Q Consensus         8 ~~~~~~~~eAl~~~~~al~~~P~~---~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~   84 (174)
                      +..++.+++|+..+++++.+.|+.   +.++.++|.++...|++          ++|+..+++++.++|....++.++|.
T Consensus        45 ~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~----------~eA~~~~~~Al~~~~~~~~~~~~la~  114 (168)
T CHL00033         45 AQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEH----------TKALEYYFQALERNPFLPQALNNMAV  114 (168)
T ss_pred             HHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence            456789999999999999997763   45999999999999999          99999999999999999999999999


Q ss_pred             HHHhCCCC---ccchhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634           85 AHTSCGFL---TADLSEAKGDFDKASECFQRAVDEEPTNE  121 (174)
Q Consensus        85 a~~~lG~~---~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~  121 (174)
                      ++..+|+.   ..+..++...+++|+.+|++++..+|++.
T Consensus       115 i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~  154 (168)
T CHL00033        115 ICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY  154 (168)
T ss_pred             HHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence            99955521   22444555556666666666666776544

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.29  E-value=5.8e-11  Score=109.90  Aligned_cols=91  Identities=11%  Similarity=0.102  Sum_probs=79.0

Q ss_pred             hhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhC
Q 030634           10 RLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSC   89 (174)
Q Consensus        10 ~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~l   89 (174)
                      ++|++++|+..++.+++++|++..++.+++.++.+.+++          ++|+..+++++..+|+++.+++.+|.++..+
T Consensus        98 ~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~----------eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~  167 (694)
T PRK15179         98 AAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGI----------EAGRAEIELYFSGGSSSAREILLEAKSWDEI  167 (694)
T ss_pred             HcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccH----------HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHh
Confidence            567888888888888888888888888888888888888          8888888888888888888888888888888


Q ss_pred             CCCccchhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634           90 GFLTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (174)
Q Consensus        90 G~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~  121 (174)
                      |           ++++|+.+|++++..+|+++
T Consensus       168 g-----------~~~~A~~~y~~~~~~~p~~~  188 (694)
T PRK15179        168 G-----------QSEQADACFERLSRQHPEFE  188 (694)
T ss_pred             c-----------chHHHHHHHHHHHhcCCCcH
Confidence            8           88888888888888888766

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=99.29  E-value=9.8e-12  Score=85.11  Aligned_cols=81  Identities=20%  Similarity=0.295  Sum_probs=74.3

Q ss_pred             hhhHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 030634           11 LLLSEHNRKTAEANYAKDPL--DADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTS   88 (174)
Q Consensus        11 ~~~~~eAl~~~~~al~~~P~--~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~   88 (174)
                      ++.|++|+..++++++.+|.  +...++.+|.+++.+|++          ++|+..+++ ++.+|.++..++.+|.++..
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y----------~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~   70 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKY----------EEAIELLQK-LKLDPSNPDIHYLLARCLLK   70 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHH----------HHHHHHHHC-HTHHHCHHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCH----------HHHHHHHHH-hCCCCCCHHHHHHHHHHHHH
Confidence            57899999999999999995  577888899999999999          999999999 99999999999999999999


Q ss_pred             CCCCccchhhhhcCHHHHHHHHHHH
Q 030634           89 CGFLTADLSEAKGDFDKASECFQRA  113 (174)
Q Consensus        89 lG~~~~~~~~a~~~~~~Ai~~~~kA  113 (174)
                      +|           +|++|+.+++++
T Consensus        71 l~-----------~y~eAi~~l~~~   84 (84)
T PF12895_consen   71 LG-----------KYEEAIKALEKA   84 (84)
T ss_dssp             TT------------HHHHHHHHHHH
T ss_pred             hC-----------CHHHHHHHHhcC
Confidence            99           999999999985

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.29  E-value=8e-11  Score=90.40  Aligned_cols=96  Identities=17%  Similarity=0.207  Sum_probs=85.2

Q ss_pred             HHHHHhhC-CCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCccchhhh
Q 030634           21 AEANYAKD-PLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEA   99 (174)
Q Consensus        21 ~~~al~~~-P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~~~~~~~~a   99 (174)
                      ......++ +++.+..+.+|..+...|++          ++|++.|+-+..+||.++..|++||.|+..+|         
T Consensus        23 l~~l~~~~~~~~l~~lY~~A~~ly~~G~l----------~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g---------   83 (157)
T PRK15363         23 LRMLLDDDVTQPLNTLYRYAMQLMEVKEF----------AGAARLFQLLTIYDAWSFDYWFRLGECCQAQK---------   83 (157)
T ss_pred             HHHHHCCChHHHHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHhCcccHHHHHHHHHHHHHHh---------
Confidence            44566788 99999999999999999999          99999999999999999999999999999988         


Q ss_pred             hcCHHHHHHHHHHHHHhCCCCHHHHHHHhcCCCChHHHHHHHHHHHhcccc
Q 030634          100 KGDFDKASECFQRAVDEEPTNELYQKSLEVSTKAPELHMELHKHGINQQTL  150 (174)
Q Consensus       100 ~~~~~~Ai~~~~kAl~l~P~~~~y~~Al~l~~~~~~~~~~l~~~~~~~~~~  150 (174)
                        +|++|+++|.+|+.++|+             +|..+.++|.+++..|..
T Consensus        84 --~~~~AI~aY~~A~~L~~d-------------dp~~~~~ag~c~L~lG~~  119 (157)
T PRK15363         84 --HWGEAIYAYGRAAQIKID-------------APQAPWAAAECYLACDNV  119 (157)
T ss_pred             --hHHHHHHHHHHHHhcCCC-------------CchHHHHHHHHHHHcCCH
Confidence              999999988886666554             677888888888888776

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.28  E-value=1.3e-10  Score=101.74  Aligned_cols=151  Identities=19%  Similarity=0.228  Sum_probs=123.6

Q ss_pred             hhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh----------------cCccc--------chhhhhhHHHHHHHHH
Q 030634           11 LLLSEHNRKTAEANYAKDPLDADNLTRWGEALLEL----------------SQFES--------VSDSKKIINEAISKFE   66 (174)
Q Consensus        11 ~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~----------------g~~~~--------~~~~~~~~~eAi~~le   66 (174)
                      +..|++|+..++...+.||-..+-.....+++.-.                .+|++        =...+++.++|+..|+
T Consensus       275 ~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFk  354 (559)
T KOG1155|consen  275 QRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFK  354 (559)
T ss_pred             hhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHH
Confidence            34788999999999999998766655555555432                22222        1123567899999999


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHH
Q 030634           67 EALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQK  125 (174)
Q Consensus        67 kAl~ldP~~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~---------------------~y~~  125 (174)
                      +|+++||+...+|..+|.=|..+.           +...|++.|++|++++|.+-                     .|++
T Consensus       355 RALkLNp~~~~aWTLmGHEyvEmK-----------Nt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqk  423 (559)
T KOG1155|consen  355 RALKLNPKYLSAWTLMGHEYVEMK-----------NTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQK  423 (559)
T ss_pred             HHHhcCcchhHHHHHhhHHHHHhc-----------ccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHH
Confidence            999999999999999999999988           99999999999999999887                     7899


Q ss_pred             HHhcCCCChHHHHHHHHHHHhcccc---------CCC--CchhhHHHHHHHHHhhhcc
Q 030634          126 SLEVSTKAPELHMELHKHGINQQTL---------GGG--SSASSAQVNFCICVHQMKM  172 (174)
Q Consensus       126 Al~l~~~~~~~~~~l~~~~~~~~~~---------~~~--~~~~~~~~~~~~~~~~~~~  172 (174)
                      |+++-|.++..+..||.||...+++         +..  -.-.++++-++-+-+++++
T Consensus       424 A~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d  481 (559)
T KOG1155|consen  424 ALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKD  481 (559)
T ss_pred             HHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHh
Confidence            9999999999999999999999888         222  2345788888888777765

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.28  E-value=2.1e-10  Score=97.51  Aligned_cols=132  Identities=17%  Similarity=0.188  Sum_probs=100.9

Q ss_pred             hHHhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccch-----------------------------hhhhh
Q 030634            7 DFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVS-----------------------------DSKKI   57 (174)
Q Consensus         7 ~~~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~-----------------------------~~~~~   57 (174)
                      .|-++|.+++|++.++++++.+|.+..++..++.++...|+++.+.                             -..+.
T Consensus       116 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~  195 (389)
T PRK11788        116 DYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGD  195 (389)
T ss_pred             HHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCC
Confidence            3556677777777777777777777777777777776666653210                             01245


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH----------------
Q 030634           58 INEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE----------------  121 (174)
Q Consensus        58 ~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~----------------  121 (174)
                      +++|+..|+++++++|++..+++.+|.++...|           ++++|+++|+++++.+|++.                
T Consensus       196 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~  264 (389)
T PRK11788        196 LDAARALLKKALAADPQCVRASILLGDLALAQG-----------DYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGD  264 (389)
T ss_pred             HHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCC
Confidence            699999999999999999999999999999988           99999999999999988763                


Q ss_pred             ------HHHHHHhcCCCChHHHHHHHHHHHhcccc
Q 030634          122 ------LYQKSLEVSTKAPELHMELHKHGINQQTL  150 (174)
Q Consensus       122 ------~y~~Al~l~~~~~~~~~~l~~~~~~~~~~  150 (174)
                            .++++++..|+...+ ..++.++..+|..
T Consensus       265 ~~~A~~~l~~~~~~~p~~~~~-~~la~~~~~~g~~  298 (389)
T PRK11788        265 EAEGLEFLRRALEEYPGADLL-LALAQLLEEQEGP  298 (389)
T ss_pred             HHHHHHHHHHHHHhCCCchHH-HHHHHHHHHhCCH
Confidence                  556677888876544 8888888888876

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.28  E-value=1.8e-11  Score=107.59  Aligned_cols=139  Identities=18%  Similarity=0.168  Sum_probs=122.2

Q ss_pred             hhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCC
Q 030634           12 LLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGF   91 (174)
Q Consensus        12 ~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~   91 (174)
                      |.+.+|-..+.++++++|.++..+..+|.+|....+.          ++-...|.+|..+||.+++.|+..|.++..++ 
T Consensus       340 g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~----------~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~-  408 (606)
T KOG0547|consen  340 GDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQS----------EKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQ-  408 (606)
T ss_pred             CCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhcc----------HHHHHHHHHHHhcCCCCCchhHhHHHHHHHHH-
Confidence            4567788889999999999999999999999998888          99999999999999999999999999999988 


Q ss_pred             CccchhhhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHhcCCCChHHHHHHHHHHHhcccc
Q 030634           92 LTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELHKHGINQQTL  150 (174)
Q Consensus        92 ~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~---------------------~y~~Al~l~~~~~~~~~~l~~~~~~~~~~  150 (174)
                                +|++|+.-|++|++++|++.                     .|..+.+..|..|+.|.-.+.++..|+-.
T Consensus       409 ----------q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqF  478 (606)
T KOG0547|consen  409 ----------QYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQF  478 (606)
T ss_pred             ----------HHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhH
Confidence                      99999999999999999998                     56788899999999999999999999887


Q ss_pred             ---------CC--CCchhhHHHHHHHHHhhhc
Q 030634          151 ---------GG--GSSASSAQVNFCICVHQMK  171 (174)
Q Consensus       151 ---------~~--~~~~~~~~~~~~~~~~~~~  171 (174)
                               ++  +|.---.+||-+..||..-
T Consensus       479 d~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~  510 (606)
T KOG0547|consen  479 DKAVKQYDKAIELEPREHLIIVNAAPLVHKAL  510 (606)
T ss_pred             HHHHHHHHHHHhhccccccccccchhhhhhhH
Confidence                     22  3665556677777777643

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.26  E-value=7e-11  Score=91.16  Aligned_cols=103  Identities=19%  Similarity=0.185  Sum_probs=85.7

Q ss_pred             HHhhhhHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 030634            8 FDRLLLSEHNRKTAEANYAKDPLD---ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGN   84 (174)
Q Consensus         8 ~~~~~~~~eAl~~~~~al~~~P~~---~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~   84 (174)
                      +.+++.+++|+..+++++...|+.   +.++.++|.++..+|++          ++|+..++++++++|++..++.++|.
T Consensus        45 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~----------~~A~~~~~~al~~~p~~~~~~~~lg~  114 (172)
T PRK02603         45 AQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEH----------DKALEYYHQALELNPKQPSALNNIAV  114 (172)
T ss_pred             HHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCcccHHHHHHHHH
Confidence            567889999999999999987764   57999999999999999          99999999999999999999999999


Q ss_pred             HHHhCCCC---ccchhhhhcCHHHHHHHHHHHHHhCCCC
Q 030634           85 AHTSCGFL---TADLSEAKGDFDKASECFQRAVDEEPTN  120 (174)
Q Consensus        85 a~~~lG~~---~~~~~~a~~~~~~Ai~~~~kAl~l~P~~  120 (174)
                      ++..+|+.   ......+...+++|+++++++++++|++
T Consensus       115 ~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~  153 (172)
T PRK02603        115 IYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN  153 (172)
T ss_pred             HHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence            99998832   2334444455667777777777777765

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.25  E-value=1.4e-11  Score=109.67  Aligned_cols=119  Identities=18%  Similarity=0.161  Sum_probs=97.3

Q ss_pred             HHhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 030634            8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT   87 (174)
Q Consensus         8 ~~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~   87 (174)
                      |-..+.|++|+++|+.|+..+|+|...|++||.++....+.          ++||..|.+|+++-|....++||||..++
T Consensus       440 y~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s----------~EAIsAY~rALqLqP~yVR~RyNlgIS~m  509 (579)
T KOG1125|consen  440 YNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRS----------EEAISAYNRALQLQPGYVRVRYNLGISCM  509 (579)
T ss_pred             HhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCccc----------HHHHHHHHHHHhcCCCeeeeehhhhhhhh
Confidence            45567999999999999999999999999999999998888          99999999999999999999999999999


Q ss_pred             hCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCHHHHHHHhcCCCChHHHHHHHHHHHhcccc
Q 030634           88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLEVSTKAPELHMELHKHGINQQTL  150 (174)
Q Consensus        88 ~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~~y~~Al~l~~~~~~~~~~l~~~~~~~~~~  150 (174)
                      .+|           .|++|+++|-.||.+.+.+..-+++=   -.....|..|-..++.-+|.
T Consensus       510 NlG-----------~ykEA~~hlL~AL~mq~ks~~~~~~~---~~se~iw~tLR~als~~~~~  558 (579)
T KOG1125|consen  510 NLG-----------AYKEAVKHLLEALSMQRKSRNHNKAP---MASENIWQTLRLALSAMNRS  558 (579)
T ss_pred             hhh-----------hHHHHHHHHHHHHHhhhcccccccCC---cchHHHHHHHHHHHHHcCCc
Confidence            999           99999999999999988743111110   00234555555555554443

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.24  E-value=4.3e-10  Score=95.61  Aligned_cols=131  Identities=12%  Similarity=0.026  Sum_probs=96.5

Q ss_pred             HhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccch----------------------------hhhhhHHH
Q 030634            9 DRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVS----------------------------DSKKIINE   60 (174)
Q Consensus         9 ~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~----------------------------~~~~~~~e   60 (174)
                      -..+.+++|+..++++++.+|+++.++..+|.++...|++..+.                            ...|.+++
T Consensus        46 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~  125 (389)
T PRK11788         46 LLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDR  125 (389)
T ss_pred             HhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHH
Confidence            34567889999999999999999999999999998888873210                            01245567


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH-------------------
Q 030634           61 AISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE-------------------  121 (174)
Q Consensus        61 Ai~~lekAl~ldP~~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~-------------------  121 (174)
                      |+..|+++++.+|.+..++..++.++...|           ++++|++.++++++.+|.+.                   
T Consensus       126 A~~~~~~~l~~~~~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~  194 (389)
T PRK11788        126 AEELFLQLVDEGDFAEGALQQLLEIYQQEK-----------DWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARG  194 (389)
T ss_pred             HHHHHHHHHcCCcchHHHHHHHHHHHHHhc-----------hHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCC
Confidence            777777777777777777777777777766           77888888887777776541                   


Q ss_pred             -------HHHHHHhcCCCChHHHHHHHHHHHhcccc
Q 030634          122 -------LYQKSLEVSTKAPELHMELHKHGINQQTL  150 (174)
Q Consensus       122 -------~y~~Al~l~~~~~~~~~~l~~~~~~~~~~  150 (174)
                             .|+++++.+|..+..+..++.++..+|..
T Consensus       195 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~  230 (389)
T PRK11788        195 DLDAARALLKKALAADPQCVRASILLGDLALAQGDY  230 (389)
T ss_pred             CHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCH
Confidence                   45666677777777777777777777766

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.23  E-value=1.1e-10  Score=102.59  Aligned_cols=133  Identities=24%  Similarity=0.352  Sum_probs=107.4

Q ss_pred             HHhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 030634            8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT   87 (174)
Q Consensus         8 ~~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~   87 (174)
                      |-.+..-++-++.+.+|.++||++++.|++.|.+++-++++          ++|+.-|++++.++|.+.-++..++.+++
T Consensus       370 y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~----------e~A~aDF~Kai~L~pe~~~~~iQl~~a~Y  439 (606)
T KOG0547|consen  370 YADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQY----------EEAIADFQKAISLDPENAYAYIQLCCALY  439 (606)
T ss_pred             HhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHH----------HHHHHHHHHHhhcChhhhHHHHHHHHHHH
Confidence            44555667778888888888888888888888888888887          88888888888888888888888888888


Q ss_pred             hCCCCc-------------cch----------hhhhcCHHHHHHHHHHHHHhCCC------CH-----------------
Q 030634           88 SCGFLT-------------ADL----------SEAKGDFDKASECFQRAVDEEPT------NE-----------------  121 (174)
Q Consensus        88 ~lG~~~-------------~~~----------~~a~~~~~~Ai~~~~kAl~l~P~------~~-----------------  121 (174)
                      +++.+.             |.+          -..+++|++|++.|++|+++.|.      ++                 
T Consensus       440 r~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~  519 (606)
T KOG0547|consen  440 RQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDI  519 (606)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhH
Confidence            877310             222          23467899999999999999999      43                 


Q ss_pred             -----HHHHHHhcCCCChHHHHHHHHHHHhcccc
Q 030634          122 -----LYQKSLEVSTKAPELHMELHKHGINQQTL  150 (174)
Q Consensus       122 -----~y~~Al~l~~~~~~~~~~l~~~~~~~~~~  150 (174)
                           ..++|++++|+...++..|+.+-+-+|-.
T Consensus       520 ~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i  553 (606)
T KOG0547|consen  520 NQAENLLRKAIELDPKCEQAYETLAQFELQRGKI  553 (606)
T ss_pred             HHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhH
Confidence                 67899999999999999999887776654

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.23  E-value=3.2e-10  Score=106.02  Aligned_cols=114  Identities=15%  Similarity=0.138  Sum_probs=59.6

Q ss_pred             hhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCC
Q 030634           12 LLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGF   91 (174)
Q Consensus        12 ~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~   91 (174)
                      |.+++|++.+.++...+|..+.++..+|.++...|++          ++|+..|+++++++|+++.++..+|.++...| 
T Consensus        29 g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~----------~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g-   97 (765)
T PRK10049         29 GQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQW----------QNSLTLWQKALSLEPQNDDYQRGLILTLADAG-   97 (765)
T ss_pred             CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC-
Confidence            4455555555555555555555555555555555555          55555555555555555555555555555544 


Q ss_pred             CccchhhhhcCHHHHHHHHHHHHHhCCCCH--------------------HHHHHHhcCCCChHHHHHHHHHHHh
Q 030634           92 LTADLSEAKGDFDKASECFQRAVDEEPTNE--------------------LYQKSLEVSTKAPELHMELHKHGIN  146 (174)
Q Consensus        92 ~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~--------------------~y~~Al~l~~~~~~~~~~l~~~~~~  146 (174)
                                ++++|+.+++++++.+|++.                    .+++++++.|+.+.++..++.++..
T Consensus        98 ----------~~~eA~~~l~~~l~~~P~~~~~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~  162 (765)
T PRK10049         98 ----------QYDEALVKAKQLVSGAPDKANLLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRN  162 (765)
T ss_pred             ----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence                      55555555555555555543                    3444445555555555555554443

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.19  E-value=6.5e-11  Score=97.50  Aligned_cols=94  Identities=18%  Similarity=0.267  Sum_probs=84.1

Q ss_pred             hHHhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 030634            7 DFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAH   86 (174)
Q Consensus         7 ~~~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~   86 (174)
                      -+.++|..++|++.++++++.+|++++++..++.+++..|++          +++...++...+..|+++..|..+|.++
T Consensus       155 ~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~----------~~~~~~l~~~~~~~~~~~~~~~~la~~~  224 (280)
T PF13429_consen  155 IYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDY----------DEAREALKRLLKAAPDDPDLWDALAAAY  224 (280)
T ss_dssp             HHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHH----------HHHHHHHHHHHHH-HTSCCHCHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCh----------HHHHHHHHHHHHHCcCHHHHHHHHHHHh
Confidence            367889999999999999999999999999999999998888          8889999888888899999999999999


Q ss_pred             HhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634           87 TSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (174)
Q Consensus        87 ~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~  121 (174)
                      ..+|           ++++|+.+|+++++.+|+++
T Consensus       225 ~~lg-----------~~~~Al~~~~~~~~~~p~d~  248 (280)
T PF13429_consen  225 LQLG-----------RYEEALEYLEKALKLNPDDP  248 (280)
T ss_dssp             HHHT------------HHHHHHHHHHHHHHSTT-H
T ss_pred             cccc-----------cccccccccccccccccccc
Confidence            9999           99999999999999999999

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.19  E-value=5.1e-10  Score=91.64  Aligned_cols=87  Identities=22%  Similarity=0.308  Sum_probs=47.4

Q ss_pred             hhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCC
Q 030634           12 LLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGF   91 (174)
Q Consensus        12 ~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~   91 (174)
                      |.-++++....++...+|.+.+.+..+|..++..|++          .+|+..++++..++|+|+++|..+|.+|...| 
T Consensus        80 G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~----------~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~G-  148 (257)
T COG5010          80 GDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNF----------GEAVSVLRKAARLAPTDWEAWNLLGAALDQLG-  148 (257)
T ss_pred             ccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcch----------HHHHHHHHHHhccCCCChhhhhHHHHHHHHcc-
Confidence            3333444444444444444444444444444444444          66666666666666666666666666666666 


Q ss_pred             CccchhhhhcCHHHHHHHHHHHHHhCCC
Q 030634           92 LTADLSEAKGDFDKASECFQRAVDEEPT  119 (174)
Q Consensus        92 ~~~~~~~a~~~~~~Ai~~~~kAl~l~P~  119 (174)
                                +++.|-..|.+++++.|+
T Consensus       149 ----------r~~~Ar~ay~qAl~L~~~  166 (257)
T COG5010         149 ----------RFDEARRAYRQALELAPN  166 (257)
T ss_pred             ----------ChhHHHHHHHHHHHhccC
Confidence                      666666655554444444

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=99.18  E-value=5e-10  Score=92.85  Aligned_cols=98  Identities=13%  Similarity=0.124  Sum_probs=90.0

Q ss_pred             hhhHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCC---CHHHHHHHHH
Q 030634           11 LLLSEHNRKTAEANYAKDPLD---ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPA---KHYTLWSLGN   84 (174)
Q Consensus        11 ~~~~~eAl~~~~~al~~~P~~---~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~---~~~a~~~LG~   84 (174)
                      .+.|++|+..|+..+...|++   +.+++++|.+++..|++          ++|+..|+++++..|+   .+++++.+|.
T Consensus       156 ~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~----------~~A~~~f~~vv~~yP~s~~~~dAl~klg~  225 (263)
T PRK10803        156 KSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKK----------DDAAYYFASVVKNYPKSPKAADAMFKVGV  225 (263)
T ss_pred             cCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence            368999999999999999998   68999999999999999          9999999999999888   5788999999


Q ss_pred             HHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCHHHHHHHhc
Q 030634           85 AHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLEV  129 (174)
Q Consensus        85 a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~~y~~Al~l  129 (174)
                      ++..+|           ++++|+..|+++++..|++...++|.+.
T Consensus       226 ~~~~~g-----------~~~~A~~~~~~vi~~yP~s~~a~~A~~r  259 (263)
T PRK10803        226 IMQDKG-----------DTAKAKAVYQQVIKKYPGTDGAKQAQKR  259 (263)
T ss_pred             HHHHcC-----------CHHHHHHHHHHHHHHCcCCHHHHHHHHH
Confidence            999998           9999999999999999999977776543

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.18  E-value=6e-10  Score=103.24  Aligned_cols=115  Identities=5%  Similarity=-0.064  Sum_probs=106.1

Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCcc
Q 030634           15 EHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTA   94 (174)
Q Consensus        15 ~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~~~~   94 (174)
                      .+++-.++......|.+++++.+||.+....|++          ++|...++.+++++|++..++.+++.++..++    
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~----------~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~----  134 (694)
T PRK15179         69 AAALPELLDYVRRYPHTELFQVLVARALEAAHRS----------DEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQ----  134 (694)
T ss_pred             HhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCc----------HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhc----
Confidence            3444555555667899999999999999999999          99999999999999999999999999999988    


Q ss_pred             chhhhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHhcCCCChHHHHHHHHHHHhcccc
Q 030634           95 DLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELHKHGINQQTL  150 (174)
Q Consensus        95 ~~~~a~~~~~~Ai~~~~kAl~l~P~~~---------------------~y~~Al~l~~~~~~~~~~l~~~~~~~~~~  150 (174)
                             ++++|+..+++++..+|++.                     .|++++..+|+.+.++.+++..+...|+.
T Consensus       135 -------~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~  204 (694)
T PRK15179        135 -------GIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGAL  204 (694)
T ss_pred             -------cHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCH
Confidence                   99999999999999999998                     78999999999999999999999999988

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.18  E-value=1.8e-10  Score=101.89  Aligned_cols=102  Identities=23%  Similarity=0.325  Sum_probs=91.4

Q ss_pred             hhHHhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 030634            6 SDFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNA   85 (174)
Q Consensus         6 ~~~~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a   85 (174)
                      .+|=+.+.|.+|++.|.+++..+|+|+..+.|.|.||..+|.+          ..|+...++++++||++..+|+.-|.+
T Consensus       366 ne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~----------~~aL~Da~~~ieL~p~~~kgy~RKg~a  435 (539)
T KOG0548|consen  366 NEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEY----------PEALKDAKKCIELDPNFIKAYLRKGAA  435 (539)
T ss_pred             HHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhH----------HHHHHHHHHHHhcCchHHHHHHHHHHH
Confidence            3556678899999999999999999999999999999999999          999999999999999999999999999


Q ss_pred             HHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH----HHHHHHh
Q 030634           86 HTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE----LYQKSLE  128 (174)
Q Consensus        86 ~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~----~y~~Al~  128 (174)
                      +..+.           +|++|++.|++++++||++.    .|+++.+
T Consensus       436 l~~mk-----------~ydkAleay~eale~dp~~~e~~~~~~rc~~  471 (539)
T KOG0548|consen  436 LRAMK-----------EYDKALEAYQEALELDPSNAEAIDGYRRCVE  471 (539)
T ss_pred             HHHHH-----------HHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence            99877           99999999999999999988    4455443

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=99.17  E-value=2.7e-10  Score=99.91  Aligned_cols=70  Identities=21%  Similarity=0.398  Sum_probs=67.2

Q ss_pred             hCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHhCCCCccchhhhhcCH
Q 030634           27 KDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYT---LWSLGNAHTSCGFLTADLSEAKGDF  103 (174)
Q Consensus        27 ~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a---~~~LG~a~~~lG~~~~~~~~a~~~~  103 (174)
                      .+|+++.+|+++|.+|..+|++          ++|+.+|++||+++|++.++   |+|+|.+|..+|           ++
T Consensus        70 ~dP~~a~a~~NLG~AL~~lGry----------eEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LG-----------r~  128 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFSKGRV----------KDALAQFETALELNPNPDEAQAAYYNKACCHAYRE-----------EG  128 (453)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcC-----------CH
Confidence            5899999999999999999999          99999999999999999965   999999999999           99


Q ss_pred             HHHHHHHHHHHHhC
Q 030634          104 DKASECFQRAVDEE  117 (174)
Q Consensus       104 ~~Ai~~~~kAl~l~  117 (174)
                      ++|+.++++|+++.
T Consensus       129 dEAla~LrrALels  142 (453)
T PLN03098        129 KKAADCLRTALRDY  142 (453)
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999999999983

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.14  E-value=9.2e-10  Score=88.02  Aligned_cols=121  Identities=15%  Similarity=0.115  Sum_probs=98.2

Q ss_pred             hHHhhhhHHHHHHHHHHHHhhCCCCHH---HHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHH----
Q 030634            7 DFDRLLLSEHNRKTAEANYAKDPLDAD---NLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTL----   79 (174)
Q Consensus         7 ~~~~~~~~~eAl~~~~~al~~~P~~~~---a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~----   79 (174)
                      -|.+++.+++|+..++++++.+|+++.   +++.+|.++.....  ......+..++|+..|+++++.+|++..++    
T Consensus        79 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~--~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~  156 (235)
T TIGR03302        79 AYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQID--RVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKK  156 (235)
T ss_pred             HHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcc--cccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHH
Confidence            356778999999999999999999887   79999999987611  111223445999999999999999997653    


Q ss_pred             -------------HHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCHHHHHHHhcCCCChHHHHHHHHHHHh
Q 030634           80 -------------WSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLEVSTKAPELHMELHKHGIN  146 (174)
Q Consensus        80 -------------~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~~y~~Al~l~~~~~~~~~~l~~~~~~  146 (174)
                                   +.+|.+|...|           ++++|+..|+++++..|++          |..++++..++.++..
T Consensus       157 ~~~~~~~~~~~~~~~~a~~~~~~g-----------~~~~A~~~~~~al~~~p~~----------~~~~~a~~~l~~~~~~  215 (235)
T TIGR03302       157 RMDYLRNRLAGKELYVARFYLKRG-----------AYVAAINRFETVVENYPDT----------PATEEALARLVEAYLK  215 (235)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcC-----------ChHHHHHHHHHHHHHCCCC----------cchHHHHHHHHHHHHH
Confidence                         45677788877           9999999999999999974          6667888888888888


Q ss_pred             cccc
Q 030634          147 QQTL  150 (174)
Q Consensus       147 ~~~~  150 (174)
                      .|..
T Consensus       216 lg~~  219 (235)
T TIGR03302       216 LGLK  219 (235)
T ss_pred             cCCH
Confidence            7765

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.14  E-value=1.4e-09  Score=89.07  Aligned_cols=116  Identities=22%  Similarity=0.191  Sum_probs=100.4

Q ss_pred             HHhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 030634            8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT   87 (174)
Q Consensus         8 ~~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~   87 (174)
                      ++..+.+++|+++|...++-||.|..++-+.-.+.-.+|+.          .+||+.+.+-++..|.|+++|..|+.+|.
T Consensus        96 lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~----------l~aIk~ln~YL~~F~~D~EAW~eLaeiY~  165 (289)
T KOG3060|consen   96 LEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKN----------LEAIKELNEYLDKFMNDQEAWHELAEIYL  165 (289)
T ss_pred             HHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCc----------HHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            56778999999999999999999999988888888888887          89999999999999999999999999999


Q ss_pred             hCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH------------------------HHHHHHhcCCCChHHHHHHHHH
Q 030634           88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE------------------------LYQKSLEVSTKAPELHMELHKH  143 (174)
Q Consensus        88 ~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~------------------------~y~~Al~l~~~~~~~~~~l~~~  143 (174)
                      ..|           +|++|..|+++.+-++|-++                        .|.++++++|+.-...+.+..+
T Consensus       166 ~~~-----------~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc  234 (289)
T KOG3060|consen  166 SEG-----------DFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLC  234 (289)
T ss_pred             hHh-----------HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHH
Confidence            988           99999999999999999888                        6778888888666655555444


Q ss_pred             H
Q 030634          144 G  144 (174)
Q Consensus       144 ~  144 (174)
                      +
T Consensus       235 ~  235 (289)
T KOG3060|consen  235 G  235 (289)
T ss_pred             H
Confidence            3

>PRK15331 chaperone protein SicA; Provisional

Probab=99.14  E-value=5.4e-10  Score=86.34  Aligned_cols=93  Identities=14%  Similarity=0.115  Sum_probs=88.3

Q ss_pred             hHHhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 030634            7 DFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAH   86 (174)
Q Consensus         7 ~~~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~   86 (174)
                      ++-++|++++|.+.|+-.+..+|.+++.|..||.++..++++          ++|+..|-.|..++++||...|..|.||
T Consensus        46 ~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y----------~~Ai~~Y~~A~~l~~~dp~p~f~agqC~  115 (165)
T PRK15331         46 EFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQF----------QKACDLYAVAFTLLKNDYRPVFFTGQCQ  115 (165)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHcccCCCCccchHHHHH
Confidence            355789999999999999999999999999999999999999          9999999999999999999999999999


Q ss_pred             HhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634           87 TSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (174)
Q Consensus        87 ~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~  121 (174)
                      ..+|           +.++|..+|..+++ +|.+.
T Consensus       116 l~l~-----------~~~~A~~~f~~a~~-~~~~~  138 (165)
T PRK15331        116 LLMR-----------KAAKARQCFELVNE-RTEDE  138 (165)
T ss_pred             HHhC-----------CHHHHHHHHHHHHh-CcchH
Confidence            9999           99999999999999 67776

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.14  E-value=1.1e-09  Score=92.82  Aligned_cols=116  Identities=17%  Similarity=0.250  Sum_probs=100.9

Q ss_pred             HHhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 030634            8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT   87 (174)
Q Consensus         8 ~~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~   87 (174)
                      |=|+|.+.+|.+.++.++...| .++.+..|+.+|....++          ..|+..+.+.+...|.+...+...+.++.
T Consensus       233 ylrLgm~r~AekqlqssL~q~~-~~dTfllLskvY~ridQP----------~~AL~~~~~gld~fP~~VT~l~g~ARi~e  301 (478)
T KOG1129|consen  233 YLRLGMPRRAEKQLQSSLTQFP-HPDTFLLLSKVYQRIDQP----------ERALLVIGEGLDSFPFDVTYLLGQARIHE  301 (478)
T ss_pred             HHHhcChhhhHHHHHHHhhcCC-chhHHHHHHHHHHHhccH----------HHHHHHHhhhhhcCCchhhhhhhhHHHHH
Confidence            6688899999999999988776 578888899999998888          89999999999999999998888888888


Q ss_pred             hCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHhcCCCChHHHHHHHHHHH
Q 030634           88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELHKHGI  145 (174)
Q Consensus        88 ~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~---------------------~y~~Al~l~~~~~~~~~~l~~~~~  145 (174)
                      .++           ++++|+++|+.+++++|.|.                     .||+.|++--.+|++|.|+|-|-+
T Consensus       302 am~-----------~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~  369 (478)
T KOG1129|consen  302 AME-----------QQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCL  369 (478)
T ss_pred             HHH-----------hHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHH
Confidence            877           99999999999999999887                     788888888888888888887643

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.13  E-value=4.5e-10  Score=102.76  Aligned_cols=93  Identities=30%  Similarity=0.385  Sum_probs=87.0

Q ss_pred             HHhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHH--HHHHHHHhCCCCHHHHHHHHHH
Q 030634            8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAIS--KFEEALVIDPAKHYTLWSLGNA   85 (174)
Q Consensus         8 ~~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~--~lekAl~ldP~~~~a~~~LG~a   85 (174)
                      +.+.+.++||...|..|+.+||+++.+...+|.++.+.|+.          .-|..  .+..++++||.++++|+.||.+
T Consensus       694 ~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~----------~la~~~~~L~dalr~dp~n~eaW~~LG~v  763 (799)
T KOG4162|consen  694 LEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSP----------RLAEKRSLLSDALRLDPLNHEAWYYLGEV  763 (799)
T ss_pred             HHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCc----------chHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence            46678999999999999999999999999999999999987          55555  9999999999999999999999


Q ss_pred             HHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634           86 HTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (174)
Q Consensus        86 ~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~  121 (174)
                      +..+|           +.++|.+||+.|+++++.++
T Consensus       764 ~k~~G-----------d~~~Aaecf~aa~qLe~S~P  788 (799)
T KOG4162|consen  764 FKKLG-----------DSKQAAECFQAALQLEESNP  788 (799)
T ss_pred             HHHcc-----------chHHHHHHHHHHHhhccCCC
Confidence            99999           99999999999999999876

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.12  E-value=3.1e-10  Score=91.76  Aligned_cols=94  Identities=26%  Similarity=0.344  Sum_probs=88.2

Q ss_pred             hHHhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Q 030634            7 DFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVI--DPAKHYTLWSLGN   84 (174)
Q Consensus         7 ~~~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~l--dP~~~~a~~~LG~   84 (174)
                      -|.++|..+-|.+.|++|++++|++.++++|.|.-+...|++          ++|...|++|+..  .|.-+..|-|+|.
T Consensus        78 ~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~----------~eA~q~F~~Al~~P~Y~~~s~t~eN~G~  147 (250)
T COG3063          78 YYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRP----------EEAMQQFERALADPAYGEPSDTLENLGL  147 (250)
T ss_pred             HHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCCh----------HHHHHHHHHHHhCCCCCCcchhhhhhHH
Confidence            377899999999999999999999999999999999999999          9999999999974  4556789999999


Q ss_pred             HHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634           85 AHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (174)
Q Consensus        85 a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~  121 (174)
                      |-++.|           +++.|.++|+++|+++|+++
T Consensus       148 Cal~~g-----------q~~~A~~~l~raL~~dp~~~  173 (250)
T COG3063         148 CALKAG-----------QFDQAEEYLKRALELDPQFP  173 (250)
T ss_pred             HHhhcC-----------CchhHHHHHHHHHHhCcCCC
Confidence            999999           99999999999999999998

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.12  E-value=9.4e-10  Score=90.10  Aligned_cols=107  Identities=20%  Similarity=0.149  Sum_probs=95.2

Q ss_pred             hhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhC
Q 030634           10 RLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSC   89 (174)
Q Consensus        10 ~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~l   89 (174)
                      +.|.|.+|+..++++..++|+|+++|..+|.+|.+.|++          ++|...|.+++++.|+++.+..|||..|...
T Consensus       112 ~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~----------~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~  181 (257)
T COG5010         112 RNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRF----------DEARRAYRQALELAPNEPSIANNLGMSLLLR  181 (257)
T ss_pred             HhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccCh----------hHHHHHHHHHHHhccCCchhhhhHHHHHHHc
Confidence            567999999999999999999999999999999999999          9999999999999999999999999999999


Q ss_pred             CCCccchhhhhcCHHHHHHHHHHHHHhCCCCHHHHHHHhcCCCChHHHHHHHHHHHhcccc
Q 030634           90 GFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLEVSTKAPELHMELHKHGINQQTL  150 (174)
Q Consensus        90 G~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~~y~~Al~l~~~~~~~~~~l~~~~~~~~~~  150 (174)
                      |           +++.|..++.++...-|.+             +....||+.+...||++
T Consensus       182 g-----------d~~~A~~lll~a~l~~~ad-------------~~v~~NLAl~~~~~g~~  218 (257)
T COG5010         182 G-----------DLEDAETLLLPAYLSPAAD-------------SRVRQNLALVVGLQGDF  218 (257)
T ss_pred             C-----------CHHHHHHHHHHHHhCCCCc-------------hHHHHHHHHHHhhcCCh
Confidence            8           9999999999876665544             44555666666666666

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.09  E-value=1.7e-09  Score=101.08  Aligned_cols=93  Identities=16%  Similarity=0.198  Sum_probs=89.8

Q ss_pred             hHHhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 030634            7 DFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAH   86 (174)
Q Consensus         7 ~~~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~   86 (174)
                      -+..++.+++|+..++++++.+|.++.++..+|.++...|++          ++|+..++++++.+|+++. ++.+|.++
T Consensus        58 ~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~----------~eA~~~l~~~l~~~P~~~~-~~~la~~l  126 (765)
T PRK10049         58 AYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQY----------DEALVKAKQLVSGAPDKAN-LLALAYVY  126 (765)
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHhCCCCHH-HHHHHHHH
Confidence            367788999999999999999999999999999999999999          9999999999999999999 99999999


Q ss_pred             HhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634           87 TSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (174)
Q Consensus        87 ~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~  121 (174)
                      ...|           ++++|+..++++++++|++.
T Consensus       127 ~~~g-----------~~~~Al~~l~~al~~~P~~~  150 (765)
T PRK10049        127 KRAG-----------RHWDELRAMTQALPRAPQTQ  150 (765)
T ss_pred             HHCC-----------CHHHHHHHHHHHHHhCCCCH
Confidence            9999           99999999999999999998

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.08  E-value=4.4e-10  Score=73.60  Aligned_cols=57  Identities=30%  Similarity=0.367  Sum_probs=54.2

Q ss_pred             hHHhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc-CcccchhhhhhHHHHHHHHHHHHHhCC
Q 030634            7 DFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELS-QFESVSDSKKIINEAISKFEEALVIDP   73 (174)
Q Consensus         7 ~~~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g-~~~~~~~~~~~~~eAi~~lekAl~ldP   73 (174)
                      .|-++++|++|+..|.++++++|+++.+|+++|.++..+| ++          ++|+..+++++++||
T Consensus        12 ~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~----------~~A~~~~~~al~l~P   69 (69)
T PF13414_consen   12 IYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDY----------EEAIEDFEKALKLDP   69 (69)
T ss_dssp             HHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHH----------HHHHHHHHHHHHHST
T ss_pred             HHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccH----------HHHHHHHHHHHHcCc
Confidence            3567899999999999999999999999999999999999 68          999999999999999

...

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=99.07  E-value=5e-10  Score=72.67  Aligned_cols=59  Identities=20%  Similarity=0.309  Sum_probs=54.6

Q ss_pred             HHhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCH
Q 030634            8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKH   76 (174)
Q Consensus         8 ~~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~   76 (174)
                      +-+.|+|++|++.++++++.+|+++++|+.+|.++..+|++          ++|+..|+++++++|+++
T Consensus         7 ~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~----------~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    7 LYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRY----------DEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-H----------HHHHHHHHHHHHHSTT-H
T ss_pred             HHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHCcCCC
Confidence            45678999999999999999999999999999999999999          999999999999999986

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.07  E-value=5.4e-10  Score=94.77  Aligned_cols=142  Identities=13%  Similarity=0.161  Sum_probs=87.0

Q ss_pred             HHhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 030634            8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT   87 (174)
Q Consensus         8 ~~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~   87 (174)
                      |-|...-+.|+..+.+.++..|.+...+...++++..+++.          ++|++.|+.+++++|.+.++.-.+|.-|+
T Consensus       266 Y~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~----------~~a~~lYk~vlk~~~~nvEaiAcia~~yf  335 (478)
T KOG1129|consen  266 YQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQ----------EDALQLYKLVLKLHPINVEAIACIAVGYF  335 (478)
T ss_pred             HHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhH----------HHHHHHHHHHHhcCCccceeeeeeeeccc
Confidence            55555666677777777777777777777777777777666          66666666666666666666666666666


Q ss_pred             hCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHhcCC---CChHHHHHHHHH
Q 030634           88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVST---KAPELHMELHKH  143 (174)
Q Consensus        88 ~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~---------------------~y~~Al~l~~---~~~~~~~~l~~~  143 (174)
                      .-|           +.+-|+.+|++.|..--.++                     .|.+|+....   +..+.|+|||-+
T Consensus       336 Y~~-----------~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~v  404 (478)
T KOG1129|consen  336 YDN-----------NPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFV  404 (478)
T ss_pred             cCC-----------ChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhcccee
Confidence            655           66666666666666554444                     4455554432   234466666655


Q ss_pred             HHhcccc-----------CCCCchhhHHHHHHHHHhhh
Q 030634          144 GINQQTL-----------GGGSSASSAQVNFCICVHQM  170 (174)
Q Consensus       144 ~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~  170 (174)
                      ....|-.           ...+.-+++++|++|+-||-
T Consensus       405 aV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~  442 (478)
T KOG1129|consen  405 AVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARS  442 (478)
T ss_pred             EEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhc
Confidence            5555543           22255566666666666554

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.06  E-value=2.4e-09  Score=92.03  Aligned_cols=90  Identities=14%  Similarity=0.214  Sum_probs=81.5

Q ss_pred             HHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHH
Q 030634           35 LTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAV  114 (174)
Q Consensus        35 ~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl  114 (174)
                      +...|...+..|++          ++|+.+|++|++++|+++.+|+++|.+|..+|           ++++|+..+++++
T Consensus         5 l~~~a~~a~~~~~~----------~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g-----------~~~eAl~~~~~Al   63 (356)
T PLN03088          5 LEDKAKEAFVDDDF----------ALAVDLYTQAIDLDPNNAELYADRAQANIKLG-----------NFTEAVADANKAI   63 (356)
T ss_pred             HHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHH
Confidence            55668888888888          99999999999999999999999999999999           9999999999999


Q ss_pred             HhCCCCH---------------------HHHHHHhcCCCChHHHHHHHHHHH
Q 030634          115 DEEPTNE---------------------LYQKSLEVSTKAPELHMELHKHGI  145 (174)
Q Consensus       115 ~l~P~~~---------------------~y~~Al~l~~~~~~~~~~l~~~~~  145 (174)
                      +++|++.                     .|+++++++|..+.++..++.+..
T Consensus        64 ~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~  115 (356)
T PLN03088         64 ELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDE  115 (356)
T ss_pred             HhCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            9999987                     678888999999998888887733

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.05  E-value=2e-09  Score=91.82  Aligned_cols=119  Identities=17%  Similarity=0.188  Sum_probs=110.6

Q ss_pred             hhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCC
Q 030634           11 LLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCG   90 (174)
Q Consensus        11 ~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG   90 (174)
                      -+.+..|+..|-.|++.||++..++++.|.+|+.+|+.          +-|+.-+.++|++.|+...|....|.+++++|
T Consensus        51 ~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGks----------k~al~Dl~rVlelKpDF~~ARiQRg~vllK~G  120 (504)
T KOG0624|consen   51 RGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKS----------KAALQDLSRVLELKPDFMAARIQRGVVLLKQG  120 (504)
T ss_pred             hhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCC----------ccchhhHHHHHhcCccHHHHHHHhchhhhhcc
Confidence            45788999999999999999999999999999999999          99999999999999999999999999999999


Q ss_pred             CCccchhhhhcCHHHHHHHHHHHHHhCCCCH------------------------------------HHHHHHhcCCCCh
Q 030634           91 FLTADLSEAKGDFDKASECFQRAVDEEPTNE------------------------------------LYQKSLEVSTKAP  134 (174)
Q Consensus        91 ~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~------------------------------------~y~~Al~l~~~~~  134 (174)
                                 .+++|..-|++.|.-+|++.                                    .....|++.|=+.
T Consensus       121 -----------ele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda  189 (504)
T KOG0624|consen  121 -----------ELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDA  189 (504)
T ss_pred             -----------cHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchh
Confidence                       99999999999999999776                                    3456678888889


Q ss_pred             HHHHHHHHHHHhcccc
Q 030634          135 ELHMELHKHGINQQTL  150 (174)
Q Consensus       135 ~~~~~l~~~~~~~~~~  150 (174)
                      .++..-+.|++.-|-+
T Consensus       190 ~l~~~Rakc~i~~~e~  205 (504)
T KOG0624|consen  190 SLRQARAKCYIAEGEP  205 (504)
T ss_pred             HHHHHHHHHHHhcCcH
Confidence            9999999999998877

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=99.03  E-value=4.4e-09  Score=87.72  Aligned_cols=96  Identities=21%  Similarity=0.201  Sum_probs=66.6

Q ss_pred             HHhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 030634            8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT   87 (174)
Q Consensus         8 ~~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~   87 (174)
                      |=+++++..|...|.+|+++.|++++.+..+|.++..+..-       .+..++...|++++++||.+..+.+.||..++
T Consensus       166 ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~-------~~ta~a~~ll~~al~~D~~~iral~lLA~~af  238 (287)
T COG4235         166 YMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQ-------QMTAKARALLRQALALDPANIRALSLLAFAAF  238 (287)
T ss_pred             HHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCC-------cccHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence            44566777777777777777777777777777776665442       23367777777777777777777777777777


Q ss_pred             hCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634           88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (174)
Q Consensus        88 ~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~  121 (174)
                      ..|           +|.+|+..+++.++..|.+.
T Consensus       239 e~g-----------~~~~A~~~Wq~lL~~lp~~~  261 (287)
T COG4235         239 EQG-----------DYAEAAAAWQMLLDLLPADD  261 (287)
T ss_pred             Hcc-----------cHHHHHHHHHHHHhcCCCCC
Confidence            766           77777777777777776655

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.02  E-value=4.8e-09  Score=92.99  Aligned_cols=118  Identities=19%  Similarity=0.250  Sum_probs=106.1

Q ss_pred             HhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 030634            9 DRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTS   88 (174)
Q Consensus         9 ~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~   88 (174)
                      .++...+++++.....--++|.-++---..|+.++..|+|          .+|+.+|.+||+.+|+|+..|-|++.||..
T Consensus       335 s~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy----------~~Av~~YteAIkr~P~Da~lYsNRAac~~k  404 (539)
T KOG0548|consen  335 SKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDY----------PEAVKHYTEAIKRDPEDARLYSNRAACYLK  404 (539)
T ss_pred             HHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCH----------HHHHHHHHHHHhcCCchhHHHHHHHHHHHH
Confidence            4556677777777777777888777777788888888888          999999999999999999999999999999


Q ss_pred             CCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHhcCCCChHHHHHHHHHHHhc
Q 030634           89 CGFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELHKHGINQ  147 (174)
Q Consensus        89 lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~---------------------~y~~Al~l~~~~~~~~~~l~~~~~~~  147 (174)
                      +|           .+..|+...++++++||+..                     .|.++++++|+..++-..+.+|+..|
T Consensus       405 L~-----------~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~  473 (539)
T KOG0548|consen  405 LG-----------EYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQ  473 (539)
T ss_pred             Hh-----------hHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHh
Confidence            99           99999999999999999998                     78899999999999999999999877

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.02  E-value=2.1e-09  Score=89.67  Aligned_cols=82  Identities=22%  Similarity=0.346  Sum_probs=74.4

Q ss_pred             hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH--------------
Q 030634           56 KIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE--------------  121 (174)
Q Consensus        56 ~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~--------------  121 (174)
                      +.|++|+..|.+||+++|+|+-.|-|.+.+|.++|           .|+.|++-.+.||.+||.+.              
T Consensus        95 ~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg-----------~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~g  163 (304)
T KOG0553|consen   95 KDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLG-----------EYEDAVKDCESALSIDPHYSKAYGRLGLAYLALG  163 (304)
T ss_pred             hhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhc-----------chHHHHHHHHHHHhcChHHHHHHHHHHHHHHccC
Confidence            44699999999999999999999999999999999           99999999999999999987              


Q ss_pred             -------HHHHHHhcCCCChHHHHHHHHHHHhcc
Q 030634          122 -------LYQKSLEVSTKAPELHMELHKHGINQQ  148 (174)
Q Consensus       122 -------~y~~Al~l~~~~~~~~~~l~~~~~~~~  148 (174)
                             .|++||+++|..+.+..+|...-..+.
T Consensus       164 k~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~  197 (304)
T KOG0553|consen  164 KYEEAIEAYKKALELDPDNESYKSNLKIAEQKLN  197 (304)
T ss_pred             cHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhc
Confidence                   789999999999998888876544433

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=99.02  E-value=2.1e-09  Score=71.01  Aligned_cols=68  Identities=21%  Similarity=0.296  Sum_probs=61.2

Q ss_pred             HHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCC
Q 030634           39 GEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEP  118 (174)
Q Consensus        39 g~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P  118 (174)
                      ..++...+++          ++|+.+++++++++|+++.+|+.+|.++..+|           ++++|+..++++++.+|
T Consensus         2 ~~~~~~~~~~----------~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g-----------~~~~A~~~l~~~l~~~p   60 (73)
T PF13371_consen    2 KQIYLQQEDY----------EEALEVLERALELDPDDPELWLQRARCLFQLG-----------RYEEALEDLERALELSP   60 (73)
T ss_pred             HHHHHhCCCH----------HHHHHHHHHHHHhCcccchhhHHHHHHHHHhc-----------cHHHHHHHHHHHHHHCC
Confidence            4567777777          99999999999999999999999999999999           99999999999999999


Q ss_pred             CCHHHHHHH
Q 030634          119 TNELYQKSL  127 (174)
Q Consensus       119 ~~~~y~~Al  127 (174)
                      ++.......
T Consensus        61 ~~~~~~~~~   69 (73)
T PF13371_consen   61 DDPDARALR   69 (73)
T ss_pred             CcHHHHHHH
Confidence            988555443

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=99.02  E-value=1.2e-09  Score=71.18  Aligned_cols=65  Identities=17%  Similarity=0.150  Sum_probs=60.4

Q ss_pred             hhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 030634           10 RLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGN   84 (174)
Q Consensus        10 ~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~   84 (174)
                      ..|.|++|++.+++++..+|+++++++.+|.+++..|++          ++|...+++++..+|+++.++..++.
T Consensus         3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~----------~~A~~~l~~~~~~~~~~~~~~~l~a~   67 (68)
T PF14559_consen    3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQY----------DEAEELLERLLKQDPDNPEYQQLLAQ   67 (68)
T ss_dssp             HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-H----------HHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence            468999999999999999999999999999999999999          99999999999999999988877765

...

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=99.01  E-value=1.1e-09  Score=71.34  Aligned_cols=60  Identities=30%  Similarity=0.424  Sum_probs=54.9

Q ss_pred             hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 030634           57 IINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSL  127 (174)
Q Consensus        57 ~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~~y~~Al  127 (174)
                      .+++|+..|+++++.+|+++.+++.+|.+|...|           ++++|...+++++..+|+++.+...+
T Consensus         6 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g-----------~~~~A~~~l~~~~~~~~~~~~~~~l~   65 (68)
T PF14559_consen    6 DYDEAIELLEKALQRNPDNPEARLLLAQCYLKQG-----------QYDEAEELLERLLKQDPDNPEYQQLL   65 (68)
T ss_dssp             HHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT------------HHHHHHHHHCCHGGGTTHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence            3499999999999999999999999999999999           99999999999999999988776654

...

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.01  E-value=5.3e-09  Score=90.28  Aligned_cols=96  Identities=24%  Similarity=0.302  Sum_probs=85.2

Q ss_pred             hHHhhhhHHHHHHHHHHHHhhCC----CCH-----------HHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHh
Q 030634            7 DFDRLLLSEHNRKTAEANYAKDP----LDA-----------DNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVI   71 (174)
Q Consensus         7 ~~~~~~~~~eAl~~~~~al~~~P----~~~-----------~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~l   71 (174)
                      .|=+.++|..|...|+++++.=+    .+.           .++.|++.|+++++++          .+|+....++|.+
T Consensus       217 ~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~----------~~Ai~~c~kvLe~  286 (397)
T KOG0543|consen  217 VLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEY----------KEAIESCNKVLEL  286 (397)
T ss_pred             HHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhH----------HHHHHHHHHHHhc
Confidence            45577899999999999888522    222           2789999999999999          9999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCHHH
Q 030634           72 DPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELY  123 (174)
Q Consensus        72 dP~~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~~y  123 (174)
                      +|+|..++|..|.++..+|           +|+.|+..|+++++++|+|...
T Consensus       287 ~~~N~KALyRrG~A~l~~~-----------e~~~A~~df~ka~k~~P~Nka~  327 (397)
T KOG0543|consen  287 DPNNVKALYRRGQALLALG-----------EYDLARDDFQKALKLEPSNKAA  327 (397)
T ss_pred             CCCchhHHHHHHHHHHhhc-----------cHHHHHHHHHHHHHhCCCcHHH
Confidence            9999999999999999999           9999999999999999999833

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.99  E-value=1.4e-08  Score=90.59  Aligned_cols=132  Identities=19%  Similarity=0.205  Sum_probs=86.5

Q ss_pred             HHhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchh------------------------hhhhHHHHHH
Q 030634            8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSD------------------------SKKIINEAIS   63 (174)
Q Consensus         8 ~~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~------------------------~~~~~~eAi~   63 (174)
                      |.+.+++.+|++.+.++..+||....+|...|..+...|+.+++..                        ..+.++-|..
T Consensus       322 Yl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~  401 (611)
T KOG1173|consen  322 YLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEK  401 (611)
T ss_pred             HHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHH
Confidence            6677889999999999999999999999999999888888732110                        1223455555


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHh----CCCCH------------------
Q 030634           64 KFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDE----EPTNE------------------  121 (174)
Q Consensus        64 ~lekAl~ldP~~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l----~P~~~------------------  121 (174)
                      .|.+|+.+.|.||-.+..+|.+.+.-+           .|.+|+.+|++++..    +++..                  
T Consensus       402 Ff~~A~ai~P~Dplv~~Elgvvay~~~-----------~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~  470 (611)
T KOG1173|consen  402 FFKQALAIAPSDPLVLHELGVVAYTYE-----------EYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNK  470 (611)
T ss_pred             HHHHHHhcCCCcchhhhhhhheeehHh-----------hhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhh
Confidence            555555555555555555555554433           566666666666621    11110                  


Q ss_pred             ------HHHHHHhcCCCChHHHHHHHHHHHhcccc
Q 030634          122 ------LYQKSLEVSTKAPELHMELHKHGINQQTL  150 (174)
Q Consensus       122 ------~y~~Al~l~~~~~~~~~~l~~~~~~~~~~  150 (174)
                            .|+++|.++|+++.+|..+|-++.-+|-+
T Consensus       471 ~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnl  505 (611)
T KOG1173|consen  471 YEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNL  505 (611)
T ss_pred             HHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcCh
Confidence                  66777788888888887777777777665

>PRK11906 transcriptional regulator; Provisional

Probab=98.99  E-value=6.8e-09  Score=91.27  Aligned_cols=111  Identities=12%  Similarity=0.046  Sum_probs=95.4

Q ss_pred             hHHHHHHHHHHHH---hhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhC
Q 030634           13 LSEHNRKTAEANY---AKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSC   89 (174)
Q Consensus        13 ~~~eAl~~~~~al---~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~l   89 (174)
                      ..++|+..+.+++   .++|..+.++..++.|+....-.++.. ......+|+.+.++|+++||.|+.+++.+|.++...
T Consensus       273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~-~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~  351 (458)
T PRK11906        273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSE-LELAAQKALELLDYVSDITTVDGKILAIMGLITGLS  351 (458)
T ss_pred             HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhh
Confidence            4578999999999   999999999999999998764433333 455668999999999999999999999999999998


Q ss_pred             CCCccchhhhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHhcCCCChH
Q 030634           90 GFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPE  135 (174)
Q Consensus        90 G~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~---------------------~y~~Al~l~~~~~~  135 (174)
                      |           +++.|+..|++|+.++|+.+                     ..++|++++|.-..
T Consensus       352 ~-----------~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~  407 (458)
T PRK11906        352 G-----------QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRK  407 (458)
T ss_pred             c-----------chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhH
Confidence            8           89999999999999999998                     56778888776543

>PRK11906 transcriptional regulator; Provisional

Probab=98.99  E-value=4.4e-09  Score=92.49  Aligned_cols=91  Identities=14%  Similarity=0.092  Sum_probs=85.7

Q ss_pred             hhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhC
Q 030634           10 RLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSC   89 (174)
Q Consensus        10 ~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~l   89 (174)
                      .-..-.+|++.+++|++++|.|+.++..+|.++...+++          +.|+..|++|+.++|+.+.+|+..|.+....
T Consensus       316 ~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~----------~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~  385 (458)
T PRK11906        316 LELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQA----------KVSHILFEQAKIHSTDIASLYYYRALVHFHN  385 (458)
T ss_pred             chHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcch----------hhHHHHHHHHhhcCCccHHHHHHHHHHHHHc
Confidence            344667899999999999999999999999999999998          9999999999999999999999999999999


Q ss_pred             CCCccchhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634           90 GFLTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (174)
Q Consensus        90 G~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~  121 (174)
                      |           +.++|++++++|++++|--.
T Consensus       386 G-----------~~~~a~~~i~~alrLsP~~~  406 (458)
T PRK11906        386 E-----------KIEEARICIDKSLQLEPRRR  406 (458)
T ss_pred             C-----------CHHHHHHHHHHHhccCchhh
Confidence            9           99999999999999999654

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.98  E-value=3.4e-09  Score=94.54  Aligned_cols=110  Identities=23%  Similarity=0.280  Sum_probs=82.9

Q ss_pred             hHHhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccc-------------------------------hhhh
Q 030634            7 DFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESV-------------------------------SDSK   55 (174)
Q Consensus         7 ~~~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~-------------------------------~~~~   55 (174)
                      .|-+++.++-|.+.+..|+.+.|+||-.+.-+|++.+..+.+..+                               .-..
T Consensus       389 ey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl  468 (611)
T KOG1173|consen  389 EYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKL  468 (611)
T ss_pred             HHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHH
Confidence            356667777777777777777777777777776665544444210                               0113


Q ss_pred             hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 030634           56 KIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSL  127 (174)
Q Consensus        56 ~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~~y~~Al  127 (174)
                      +.+++||..|+++|.+.|++++++-.+|.+|..+|           ++++|+++|.|||.++|++......|
T Consensus       469 ~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llg-----------nld~Aid~fhKaL~l~p~n~~~~~lL  529 (611)
T KOG1173|consen  469 NKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLG-----------NLDKAIDHFHKALALKPDNIFISELL  529 (611)
T ss_pred             hhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhc-----------ChHHHHHHHHHHHhcCCccHHHHHHH
Confidence            45699999999999999999999999999999988           99999999999999999997444333

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.96  E-value=9.1e-09  Score=78.85  Aligned_cols=102  Identities=19%  Similarity=0.189  Sum_probs=82.6

Q ss_pred             hHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHH
Q 030634           13 LSEHNRKTAEANYAKDPLD--ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAK---HYTLWSLGNAHT   87 (174)
Q Consensus        13 ~~~eAl~~~~~al~~~P~~--~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~---~~a~~~LG~a~~   87 (174)
                      -|.++...+...++.++.+  ..+++++|.++...|++          ++|+..|++++.+.|+.   +.+|+++|.++.
T Consensus        14 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~----------~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~   83 (168)
T CHL00033         14 TFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEY----------AEALQNYYEAMRLEIDPYDRSYILYNIGLIHT   83 (168)
T ss_pred             ccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHhccccchhhHHHHHHHHHHHH
Confidence            3666777776666777776  77789999999999999          99999999999998774   458999999999


Q ss_pred             hCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCHHHHHHHhcCCCChHHHHHHHHHHHhcc
Q 030634           88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLEVSTKAPELHMELHKHGINQQ  148 (174)
Q Consensus        88 ~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~~y~~Al~l~~~~~~~~~~l~~~~~~~~  148 (174)
                      ..|           ++++|+.+|+++++++|.+.             ..+.+++.++..++
T Consensus        84 ~~g-----------~~~eA~~~~~~Al~~~~~~~-------------~~~~~la~i~~~~~  120 (168)
T CHL00033         84 SNG-----------EHTKALEYYFQALERNPFLP-------------QALNNMAVICHYRG  120 (168)
T ss_pred             HcC-----------CHHHHHHHHHHHHHhCcCcH-------------HHHHHHHHHHHHhh
Confidence            999           99999999999888877654             44555555555444

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=98.96  E-value=1e-08  Score=95.30  Aligned_cols=89  Identities=18%  Similarity=0.233  Sum_probs=65.5

Q ss_pred             hhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCC
Q 030634           12 LLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGF   91 (174)
Q Consensus        12 ~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~   91 (174)
                      |++++|.+.+.++++++|.++.+|+.||.+|-..|+.          +++...+-.|--++|++.+-|..++.....+| 
T Consensus       153 g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~----------eK~l~~~llAAHL~p~d~e~W~~ladls~~~~-  221 (895)
T KOG2076|consen  153 GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDI----------EKALNFWLLAAHLNPKDYELWKRLADLSEQLG-  221 (895)
T ss_pred             CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccH----------HHHHHHHHHHHhcCCCChHHHHHHHHHHHhcc-
Confidence            8999999999999999999999999999999999988          55555555555555555555555555555555 


Q ss_pred             CccchhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634           92 LTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (174)
Q Consensus        92 ~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~  121 (174)
                                ++++|.-||.|||+.+|.+.
T Consensus       222 ----------~i~qA~~cy~rAI~~~p~n~  241 (895)
T KOG2076|consen  222 ----------NINQARYCYSRAIQANPSNW  241 (895)
T ss_pred             ----------cHHHHHHHHHHHHhcCCcch
Confidence                      55555555555555555554

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.95  E-value=1.2e-08  Score=72.13  Aligned_cols=87  Identities=21%  Similarity=0.282  Sum_probs=71.9

Q ss_pred             HHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhCCCCccchhhhhcCHHHHHH
Q 030634           32 ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAK---HYTLWSLGNAHTSCGFLTADLSEAKGDFDKASE  108 (174)
Q Consensus        32 ~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~---~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~  108 (174)
                      +++++.+|..+...|++          ++|+..|+++++.+|++   +.+++.+|.++...|           ++++|+.
T Consensus         2 ~~~~~~~~~~~~~~~~~----------~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----------~~~~A~~   60 (119)
T TIGR02795         2 EEAYYDAALLVLKAGDY----------ADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQG-----------KYADAAK   60 (119)
T ss_pred             cHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhc-----------cHHHHHH
Confidence            57889999999999999          99999999999999987   578999999999998           9999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHhcCCCChHHHHHHHHHHHhccc
Q 030634          109 CFQRAVDEEPTNELYQKSLEVSTKAPELHMELHKHGINQQT  149 (174)
Q Consensus       109 ~~~kAl~l~P~~~~y~~Al~l~~~~~~~~~~l~~~~~~~~~  149 (174)
                      +|++++..+|++.          ..+..+..++.++..++.
T Consensus        61 ~~~~~~~~~p~~~----------~~~~~~~~~~~~~~~~~~   91 (119)
T TIGR02795        61 AFLAVVKKYPKSP----------KAPDALLKLGMSLQELGD   91 (119)
T ss_pred             HHHHHHHHCCCCC----------cccHHHHHHHHHHHHhCC
Confidence            9999999998753          124445555555554443

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.95  E-value=2.8e-08  Score=93.74  Aligned_cols=91  Identities=18%  Similarity=0.139  Sum_probs=56.7

Q ss_pred             hhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhC
Q 030634           10 RLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSC   89 (174)
Q Consensus        10 ~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~l   89 (174)
                      |.|.+.+|+..++++++.+|+++.+..-+..++...|+.          ++|+..+++++.-+|........+|.++...
T Consensus        46 r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~----------~~A~~~~eka~~p~n~~~~~llalA~ly~~~  115 (822)
T PRK14574         46 RAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRD----------QEVIDVYERYQSSMNISSRGLASAARAYRNE  115 (822)
T ss_pred             hCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCc----------HHHHHHHHHhccCCCCCHHHHHHHHHHHHHc
Confidence            566788888999999888888864444777777777776          5555555555522233333333335555555


Q ss_pred             CCCccchhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634           90 GFLTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (174)
Q Consensus        90 G~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~  121 (174)
                      |           ++++|++.|+++++++|+++
T Consensus       116 g-----------dyd~Aiely~kaL~~dP~n~  136 (822)
T PRK14574        116 K-----------RWDQALALWQSSLKKDPTNP  136 (822)
T ss_pred             C-----------CHHHHHHHHHHHHhhCCCCH
Confidence            5           55555555555555555555

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.94  E-value=2.8e-08  Score=73.25  Aligned_cols=100  Identities=22%  Similarity=0.172  Sum_probs=89.1

Q ss_pred             hHHhhhhHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCC---CHHHHH
Q 030634            7 DFDRLLLSEHNRKTAEANYAKDPLD---ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPA---KHYTLW   80 (174)
Q Consensus         7 ~~~~~~~~~eAl~~~~~al~~~P~~---~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~---~~~a~~   80 (174)
                      -+|.+|+.++|+..|++++...+..   ..++..+|.++..+|++          ++|+..+++++...|+   +.....
T Consensus        10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~----------deA~~~L~~~~~~~p~~~~~~~l~~   79 (120)
T PF12688_consen   10 AHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRY----------DEALALLEEALEEFPDDELNAALRV   79 (120)
T ss_pred             HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHCCCccccHHHHH
Confidence            5789999999999999999986555   56899999999999999          9999999999999898   888889


Q ss_pred             HHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCHHHHHHHhc
Q 030634           81 SLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLEV  129 (174)
Q Consensus        81 ~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~~y~~Al~l  129 (174)
                      .++.++..+|           ++++|+..+-.++.  |....|++++..
T Consensus        80 f~Al~L~~~g-----------r~~eAl~~~l~~la--~~~~~y~ra~~~  115 (120)
T PF12688_consen   80 FLALALYNLG-----------RPKEALEWLLEALA--ETLPRYRRAIRF  115 (120)
T ss_pred             HHHHHHHHCC-----------CHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence            9999999999           99999999998886  444488888865

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.93  E-value=1.1e-08  Score=66.78  Aligned_cols=82  Identities=23%  Similarity=0.401  Sum_probs=70.4

Q ss_pred             HHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHH
Q 030634           34 NLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRA  113 (174)
Q Consensus        34 a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kA  113 (174)
                      +++.+|.++...|++          ++|+..++++++..|+++.+++.+|.++...|           ++++|+.+++++
T Consensus         2 ~~~~~a~~~~~~~~~----------~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~a~~~~~~~   60 (100)
T cd00189           2 ALLNLGNLYYKLGDY----------DEALEYYEKALELDPDNADAYYNLAAAYYKLG-----------KYEEALEDYEKA   60 (100)
T ss_pred             HHHHHHHHHHHHhcH----------HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHH-----------HHHHHHHHHHHH
Confidence            578899999999998          99999999999999999999999999999988           999999999998


Q ss_pred             HHhCCCCHHHHHHHhcCCCChHHHHHHHHHHHhccc
Q 030634          114 VDEEPTNELYQKSLEVSTKAPELHMELHKHGINQQT  149 (174)
Q Consensus       114 l~l~P~~~~y~~Al~l~~~~~~~~~~l~~~~~~~~~  149 (174)
                      ++..|.+.             ..+..++.++..++.
T Consensus        61 ~~~~~~~~-------------~~~~~~~~~~~~~~~   83 (100)
T cd00189          61 LELDPDNA-------------KAYYNLGLAYYKLGK   83 (100)
T ss_pred             HhCCCcch-------------hHHHHHHHHHHHHHh
Confidence            88888655             455555555555544

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.92  E-value=2e-08  Score=94.68  Aligned_cols=118  Identities=9%  Similarity=0.073  Sum_probs=83.3

Q ss_pred             hhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhC
Q 030634           10 RLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSC   89 (174)
Q Consensus        10 ~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~l   89 (174)
                      .+|.+++|+..+++++.-+|.....+..+|.++..+|++          ++|+..|+++++++|+++.+++.++.++...
T Consensus        80 ~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdy----------d~Aiely~kaL~~dP~n~~~l~gLa~~y~~~  149 (822)
T PRK14574         80 WAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRW----------DQALALWQSSLKKDPTNPDLISGMIMTQADA  149 (822)
T ss_pred             HcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHhhCCCCHHHHHHHHHHHhhc
Confidence            456777888888888744455555555557777777777          7888888888888888888877777777777


Q ss_pred             CCCccchhhhhcCHHHHHHHHHHHHHhCCCCH--------------------HHHHHHhcCCCChHHHHHHHHHHHhcc
Q 030634           90 GFLTADLSEAKGDFDKASECFQRAVDEEPTNE--------------------LYQKSLEVSTKAPELHMELHKHGINQQ  148 (174)
Q Consensus        90 G~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~--------------------~y~~Al~l~~~~~~~~~~l~~~~~~~~  148 (174)
                      |           +.++|++.+++++..+|++.                    .|+++++.+|..++++..+..++...|
T Consensus       150 ~-----------q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~  217 (822)
T PRK14574        150 G-----------RGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNR  217 (822)
T ss_pred             C-----------CHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence            7           77777777777777777765                    455666666776666666665554444

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.91  E-value=3.5e-08  Score=88.85  Aligned_cols=94  Identities=12%  Similarity=0.014  Sum_probs=61.0

Q ss_pred             hHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhCC
Q 030634           13 LSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVI--DPAKHYTLWSLGNAHTSCG   90 (174)
Q Consensus        13 ~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~l--dP~~~~a~~~LG~a~~~lG   90 (174)
                      .+.+|+.++++|++++|+++.++..++.++.....+..  .....+..+....++++.+  +|.++.+|..+|.++...|
T Consensus       357 ~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~--~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g  434 (517)
T PRK10153        357 SLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQP--LDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKG  434 (517)
T ss_pred             HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCC--ccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcC
Confidence            57799999999999999999999999988866544422  1112334455555554443  5555555555555555555


Q ss_pred             CCccchhhhhcCHHHHHHHHHHHHHhCCC
Q 030634           91 FLTADLSEAKGDFDKASECFQRAVDEEPT  119 (174)
Q Consensus        91 ~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~  119 (174)
                                 ++++|..++++|++++|+
T Consensus       435 -----------~~~~A~~~l~rAl~L~ps  452 (517)
T PRK10153        435 -----------KTDEAYQAINKAIDLEMS  452 (517)
T ss_pred             -----------CHHHHHHHHHHHHHcCCC
Confidence                       666666666666666653

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.91  E-value=2.8e-08  Score=82.97  Aligned_cols=90  Identities=21%  Similarity=0.240  Sum_probs=81.0

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCc
Q 030634           14 SEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLT   93 (174)
Q Consensus        14 ~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~~~   93 (174)
                      .++.+..++..+..||+|++-|..||.+|+.+|++          ..|...|.+|+++.|++++.+..+|.+++...   
T Consensus       138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~----------~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a---  204 (287)
T COG4235         138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRA----------SDALLAYRNALRLAGDNPEILLGLAEALYYQA---  204 (287)
T ss_pred             HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcch----------hHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc---
Confidence            45667778889999999999999999999999999          99999999999999999999999999987654   


Q ss_pred             cchhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634           94 ADLSEAKGDFDKASECFQRAVDEEPTNE  121 (174)
Q Consensus        94 ~~~~~a~~~~~~Ai~~~~kAl~l~P~~~  121 (174)
                           ......++...+++++++||++.
T Consensus       205 -----~~~~ta~a~~ll~~al~~D~~~i  227 (287)
T COG4235         205 -----GQQMTAKARALLRQALALDPANI  227 (287)
T ss_pred             -----CCcccHHHHHHHHHHHhcCCccH
Confidence                 13357899999999999999988

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.89  E-value=2.4e-08  Score=77.00  Aligned_cols=73  Identities=27%  Similarity=0.427  Sum_probs=65.6

Q ss_pred             CCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhCCCCccchhhhhcCHH
Q 030634           28 DPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAK---HYTLWSLGNAHTSCGFLTADLSEAKGDFD  104 (174)
Q Consensus        28 ~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~---~~a~~~LG~a~~~lG~~~~~~~~a~~~~~  104 (174)
                      +|..+.+++++|..+...|++          ++|+.+|+++++++|+.   +.+++++|.++..+|           +++
T Consensus        31 ~~~~a~~~~~lg~~~~~~g~~----------~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g-----------~~~   89 (172)
T PRK02603         31 KAKEAFVYYRDGMSAQADGEY----------AEALENYEEALKLEEDPNDRSYILYNMGIIYASNG-----------EHD   89 (172)
T ss_pred             HhhhHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcC-----------CHH
Confidence            446777899999999999999          99999999999998774   468999999999999           999


Q ss_pred             HHHHHHHHHHHhCCCCH
Q 030634          105 KASECFQRAVDEEPTNE  121 (174)
Q Consensus       105 ~Ai~~~~kAl~l~P~~~  121 (174)
                      +|+.+++++++++|++.
T Consensus        90 ~A~~~~~~al~~~p~~~  106 (172)
T PRK02603         90 KALEYYHQALELNPKQP  106 (172)
T ss_pred             HHHHHHHHHHHhCcccH
Confidence            99999999999988765

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.89  E-value=1.4e-08  Score=88.15  Aligned_cols=134  Identities=20%  Similarity=0.189  Sum_probs=113.6

Q ss_pred             hhHHhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchh--------------------------------
Q 030634            6 SDFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSD--------------------------------   53 (174)
Q Consensus         6 ~~~~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~--------------------------------   53 (174)
                      ++|-.+..|.+|++.+..|++..|+++..|.+.+.+++.+++|+...-                                
T Consensus        57 n~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A  136 (486)
T KOG0550|consen   57 NAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEA  136 (486)
T ss_pred             chHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHH
Confidence            467788899999999999999999999999999999999888853110                                


Q ss_pred             --------------------------------------------hhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhC
Q 030634           54 --------------------------------------------SKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSC   89 (174)
Q Consensus        54 --------------------------------------------~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~l   89 (174)
                                                                  ..+.+.+|+..--..+++|+.+.++++-.|.+++..
T Consensus       137 ~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~  216 (486)
T KOG0550|consen  137 EEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYN  216 (486)
T ss_pred             HHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccc
Confidence                                                        012345556666677889999999999999999998


Q ss_pred             CCCccchhhhhcCHHHHHHHHHHHHHhCCCCH---------------------------------HHHHHHhcCCCChH-
Q 030634           90 GFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------------------LYQKSLEVSTKAPE-  135 (174)
Q Consensus        90 G~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~---------------------------------~y~~Al~l~~~~~~-  135 (174)
                      +           +.++|+.+|+++|.++|++.                                 +|..||.++|.... 
T Consensus       217 ~-----------~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~  285 (486)
T KOG0550|consen  217 D-----------NADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKT  285 (486)
T ss_pred             c-----------chHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccch
Confidence            8           99999999999999999987                                 78899999998744 


Q ss_pred             ---HHHHHHHHHHhcccc
Q 030634          136 ---LHMELHKHGINQQTL  150 (174)
Q Consensus       136 ---~~~~l~~~~~~~~~~  150 (174)
                         +|.|.+.+.+..||+
T Consensus       286 naklY~nra~v~~rLgrl  303 (486)
T KOG0550|consen  286 NAKLYGNRALVNIRLGRL  303 (486)
T ss_pred             hHHHHHHhHhhhcccCCc
Confidence               799999999999998

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.87  E-value=1.3e-08  Score=67.11  Aligned_cols=67  Identities=19%  Similarity=0.204  Sum_probs=62.3

Q ss_pred             hHHhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 030634            7 DFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLG   83 (174)
Q Consensus         7 ~~~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG   83 (174)
                      -|-+.+.|++|++.+++++.++|+++..|..+|.++..+|++          ++|+..|+++++++|+++.+....+
T Consensus         4 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~----------~~A~~~l~~~l~~~p~~~~~~~~~a   70 (73)
T PF13371_consen    4 IYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRY----------EEALEDLERALELSPDDPDARALRA   70 (73)
T ss_pred             HHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccH----------HHHHHHHHHHHHHCCCcHHHHHHHH
Confidence            466788999999999999999999999999999999999999          9999999999999999999876554

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.83  E-value=2.5e-08  Score=83.91  Aligned_cols=91  Identities=15%  Similarity=0.165  Sum_probs=82.8

Q ss_pred             hHHhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHH----HHHHH
Q 030634            7 DFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHY----TLWSL   82 (174)
Q Consensus         7 ~~~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~----a~~~L   82 (174)
                      .+..+|++++|++.++++++++|+++.++..+|.++...|++          ++|+..+++++...|.++.    .|+.+
T Consensus       123 ~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~----------~eA~~~l~~~l~~~~~~~~~~~~~~~~l  192 (355)
T cd05804         123 GLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRF----------KEGIAFMESWRDTWDCSSMLRGHNWWHL  192 (355)
T ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCH----------HHHHHHHHhhhhccCCCcchhHHHHHHH
Confidence            456788999999999999999999999999999999999999          9999999999999886543    46689


Q ss_pred             HHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCC
Q 030634           83 GNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEP  118 (174)
Q Consensus        83 G~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P  118 (174)
                      |.++...|           ++++|+.+|++++...|
T Consensus       193 a~~~~~~G-----------~~~~A~~~~~~~~~~~~  217 (355)
T cd05804         193 ALFYLERG-----------DYEAALAIYDTHIAPSA  217 (355)
T ss_pred             HHHHHHCC-----------CHHHHHHHHHHHhcccc
Confidence            99999999           99999999999988877

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.83  E-value=6.6e-08  Score=81.34  Aligned_cols=99  Identities=13%  Similarity=0.048  Sum_probs=67.0

Q ss_pred             HhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCccc----------------------------chhhhhhHHH
Q 030634            9 DRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFES----------------------------VSDSKKIINE   60 (174)
Q Consensus         9 ~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~----------------------------~~~~~~~~~e   60 (174)
                      -..+.+++|++.++++++.+|++..++.. +..+...|.+..                            .....|.+++
T Consensus        54 ~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~  132 (355)
T cd05804          54 WIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDR  132 (355)
T ss_pred             HHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHH
Confidence            34567888888888888888888877765 555544443311                            0112344577


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCC
Q 030634           61 AISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPT  119 (174)
Q Consensus        61 Ai~~lekAl~ldP~~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~  119 (174)
                      |+..++++++++|+++.++..+|.++...|           ++++|+.+++++++..|.
T Consensus       133 A~~~~~~al~~~p~~~~~~~~la~i~~~~g-----------~~~eA~~~l~~~l~~~~~  180 (355)
T cd05804         133 AEEAARRALELNPDDAWAVHAVAHVLEMQG-----------RFKEGIAFMESWRDTWDC  180 (355)
T ss_pred             HHHHHHHHHhhCCCCcHHHHHHHHHHHHcC-----------CHHHHHHHHHhhhhccCC
Confidence            777777777777777777777777777766           777777777777776663

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.82  E-value=4.7e-09  Score=70.35  Aligned_cols=67  Identities=31%  Similarity=0.452  Sum_probs=57.2

Q ss_pred             CCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHh---CC-C---CHHHHHHHHHHHHhCCCCccchhhhhc
Q 030634           29 PLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVI---DP-A---KHYTLWSLGNAHTSCGFLTADLSEAKG  101 (174)
Q Consensus        29 P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~l---dP-~---~~~a~~~LG~a~~~lG~~~~~~~~a~~  101 (174)
                      |+-+.++.++|.++..+|++          ++|+..|++++++   .+ +   -..++.++|.++..+|           
T Consensus         2 ~~~a~~~~~la~~~~~~~~~----------~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g-----------   60 (78)
T PF13424_consen    2 PDTANAYNNLARVYRELGRY----------DEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLG-----------   60 (78)
T ss_dssp             HHHHHHHHHHHHHHHHTT-H----------HHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTT-----------
T ss_pred             HHHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcC-----------
Confidence            44577899999999999999          9999999999976   22 2   2457899999999999           


Q ss_pred             CHHHHHHHHHHHHHh
Q 030634          102 DFDKASECFQRAVDE  116 (174)
Q Consensus       102 ~~~~Ai~~~~kAl~l  116 (174)
                      ++++|++++++|+++
T Consensus        61 ~~~~A~~~~~~al~i   75 (78)
T PF13424_consen   61 DYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhh
Confidence            999999999999986

...

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=98.82  E-value=8.1e-08  Score=90.04  Aligned_cols=98  Identities=18%  Similarity=0.174  Sum_probs=88.5

Q ss_pred             hHHhhhhHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 030634            7 DFDRLLLSEHNRKTAEANYAKDPLD-ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNA   85 (174)
Q Consensus         7 ~~~~~~~~~eAl~~~~~al~~~P~~-~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a   85 (174)
                      -|+.+|.|++|.++|.+++..+|++ .-+++.+|..++..|+.          +.|+.+|+++++..|++.++...||..
T Consensus       316 s~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dl----------e~s~~~fEkv~k~~p~~~etm~iLG~L  385 (1018)
T KOG2002|consen  316 SYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDL----------EESKFCFEKVLKQLPNNYETMKILGCL  385 (1018)
T ss_pred             HHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchH----------HHHHHHHHHHHHhCcchHHHHHHHHhH
Confidence            4789999999999999999999998 88899999999999888          999999999999999999999999999


Q ss_pred             HHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634           86 HTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (174)
Q Consensus        86 ~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~  121 (174)
                      |...+       ......++|..+..++++..|.+.
T Consensus       386 ya~~~-------~~~~~~d~a~~~l~K~~~~~~~d~  414 (1018)
T KOG2002|consen  386 YAHSA-------KKQEKRDKASNVLGKVLEQTPVDS  414 (1018)
T ss_pred             HHhhh-------hhhHHHHHHHHHHHHHHhcccccH
Confidence            98853       223356899999999999999887

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.81  E-value=1.5e-07  Score=82.95  Aligned_cols=121  Identities=19%  Similarity=0.135  Sum_probs=102.0

Q ss_pred             HhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 030634            9 DRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTS   88 (174)
Q Consensus         9 ~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~   88 (174)
                      -+.+.+++|++.++..+...|+|+-.+...+.++++.++.          ++|++.+++++.++|+.+-.++++|.+|..
T Consensus       317 ~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~----------~~A~e~~~kal~l~P~~~~l~~~~a~all~  386 (484)
T COG4783         317 YLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKA----------KEAIERLKKALALDPNSPLLQLNLAQALLK  386 (484)
T ss_pred             HHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh----------HHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence            3567889999999999999999999999999999999999          999999999999999999999999999999


Q ss_pred             CCCCccchhhhhcCHHHHHHHHHHHHHhCCCCHHHHH----HHhcCCCChHHHHHHHHHHHhcccc
Q 030634           89 CGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQK----SLEVSTKAPELHMELHKHGINQQTL  150 (174)
Q Consensus        89 lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~~y~~----Al~l~~~~~~~~~~l~~~~~~~~~~  150 (174)
                      .|           ++.+|+..+++.+.-+|+++..+.    +-+.--+.++.+.+.+..+.-.|++
T Consensus       387 ~g-----------~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~  441 (484)
T COG4783         387 GG-----------KPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRL  441 (484)
T ss_pred             cC-----------ChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCH
Confidence            99           999999999999999998883332    2233444556666666665555554

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.80  E-value=6e-08  Score=77.64  Aligned_cols=101  Identities=14%  Similarity=0.209  Sum_probs=90.9

Q ss_pred             hhhHHHHHHHHHHHHhhCCCCHH-----HHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 030634           11 LLLSEHNRKTAEANYAKDPLDAD-----NLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNA   85 (174)
Q Consensus        11 ~~~~~eAl~~~~~al~~~P~~~~-----a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a   85 (174)
                      -|.|++|...|..|+++-|.-+.     .+.+.|.+++.++.+          +.||....+||+++|.+-.|+...+.+
T Consensus       108 ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~----------e~aI~dcsKaiel~pty~kAl~RRAea  177 (271)
T KOG4234|consen  108 NGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKW----------ESAIEDCSKAIELNPTYEKALERRAEA  177 (271)
T ss_pred             cccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhH----------HHHHHHHHhhHhcCchhHHHHHHHHHH
Confidence            36899999999999999988644     678899999999998          999999999999999999999999999


Q ss_pred             HHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCHHHHHHHhcCCC
Q 030634           86 HTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLEVSTK  132 (174)
Q Consensus        86 ~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~~y~~Al~l~~~  132 (174)
                      |..+.           .|++|++-|++.++++|.....|+++...|.
T Consensus       178 yek~e-----------k~eealeDyKki~E~dPs~~ear~~i~rl~~  213 (271)
T KOG4234|consen  178 YEKME-----------KYEEALEDYKKILESDPSRREAREAIARLPP  213 (271)
T ss_pred             HHhhh-----------hHHHHHHHHHHHHHhCcchHHHHHHHHhcCH
Confidence            99977           9999999999999999999988888744433

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.80  E-value=4e-07  Score=79.21  Aligned_cols=151  Identities=9%  Similarity=0.062  Sum_probs=109.2

Q ss_pred             HHhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhH-----------------------------
Q 030634            8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKII-----------------------------   58 (174)
Q Consensus         8 ~~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~-----------------------------   58 (174)
                      +-+++.+++|+..+++..+.+|+++.++..++.++...|+++.........                             
T Consensus       163 ~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~  242 (398)
T PRK10747        163 QLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMAD  242 (398)
T ss_pred             HHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence            456789999999999999999999999999999999999984322110000                             


Q ss_pred             ---HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH--------------
Q 030634           59 ---NEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE--------------  121 (174)
Q Consensus        59 ---~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~--------------  121 (174)
                         +...+.+++..+..|+++.++..++..+...|           +.++|....+++++..|+..              
T Consensus       243 ~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g-----------~~~~A~~~L~~~l~~~~~~~l~~l~~~l~~~~~~  311 (398)
T PRK10747        243 QGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECD-----------DHDTAQQIILDGLKRQYDERLVLLIPRLKTNNPE  311 (398)
T ss_pred             cCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHhcCCCHHHHHHHhhccCCChH
Confidence               00011111111234668888888888888888           99999999999999666554              


Q ss_pred             ----HHHHHHhcCCCChHHHHHHHHHHHhcccc-----------CCCCchhhHHHHHHHHHhhh
Q 030634          122 ----LYQKSLEVSTKAPELHMELHKHGINQQTL-----------GGGSSASSAQVNFCICVHQM  170 (174)
Q Consensus       122 ----~y~~Al~l~~~~~~~~~~l~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~  170 (174)
                          ..++.++..|+++..+..+|.+++.++..           ...|+.. ++.-++.+....
T Consensus       312 ~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~-~~~~La~~~~~~  374 (398)
T PRK10747        312 QLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAY-DYAWLADALDRL  374 (398)
T ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHc
Confidence                55667788999999999999999999987           2235543 344555555443

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.78  E-value=1.2e-07  Score=77.95  Aligned_cols=95  Identities=20%  Similarity=0.202  Sum_probs=87.2

Q ss_pred             HhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 030634            9 DRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTS   88 (174)
Q Consensus         9 ~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~   88 (174)
                      ..+|.--+|++...+-++..|+|+++|.-++.+|...|+|          ++|.-|+|+.+-+.|.++..+-.+|.+++.
T Consensus       131 ka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f----------~kA~fClEE~ll~~P~n~l~f~rlae~~Yt  200 (289)
T KOG3060|consen  131 KAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDF----------EKAAFCLEELLLIQPFNPLYFQRLAEVLYT  200 (289)
T ss_pred             HHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHH----------HHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence            3467777999999999999999999999999999999999          999999999999999999999999999988


Q ss_pred             CCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634           89 CGFLTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (174)
Q Consensus        89 lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~  121 (174)
                      +|        ..++++-|.++|.++++++|.+.
T Consensus       201 ~g--------g~eN~~~arkyy~~alkl~~~~~  225 (289)
T KOG3060|consen  201 QG--------GAENLELARKYYERALKLNPKNL  225 (289)
T ss_pred             Hh--------hHHHHHHHHHHHHHHHHhChHhH
Confidence            77        14578999999999999999665

>TIGR00540 hemY_coli hemY protein

Probab=98.76  E-value=5.3e-07  Score=78.57  Aligned_cols=129  Identities=15%  Similarity=0.162  Sum_probs=105.8

Q ss_pred             hhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhh-----------------------hhhH-----HHHH
Q 030634           11 LLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDS-----------------------KKII-----NEAI   62 (174)
Q Consensus        11 ~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~-----------------------~~~~-----~eAi   62 (174)
                      .+.+++|+..+++..+.+|+++.++..++.++...|+++.....                       .+.+     ++++
T Consensus       166 ~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~  245 (409)
T TIGR00540       166 QNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGI  245 (409)
T ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence            57899999999999999999999999999999999998531110                       0112     2223


Q ss_pred             HHHHHHHHhCC----CCHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH-----------------
Q 030634           63 SKFEEALVIDP----AKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE-----------------  121 (174)
Q Consensus        63 ~~lekAl~ldP----~~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~-----------------  121 (174)
                      ..++++.+..|    +++.+++.++..+...|           ++++|++.++++++..|++.                 
T Consensus       246 ~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g-----------~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~  314 (409)
T TIGR00540       246 DGLLNWWKNQPRHRRHNIALKIALAEHLIDCD-----------DHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPED  314 (409)
T ss_pred             HHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCC-----------ChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCC
Confidence            46777777788    58999999999999988           99999999999999999887                 


Q ss_pred             ------HHHHHHhcCCCCh--HHHHHHHHHHHhcccc
Q 030634          122 ------LYQKSLEVSTKAP--ELHMELHKHGINQQTL  150 (174)
Q Consensus       122 ------~y~~Al~l~~~~~--~~~~~l~~~~~~~~~~  150 (174)
                            .++++++..|++|  .....+|.+++.+|..
T Consensus       315 ~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~  351 (409)
T TIGR00540       315 NEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEF  351 (409)
T ss_pred             hHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccH
Confidence                  4466778889999  8888999999988876

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.73  E-value=1.5e-07  Score=84.75  Aligned_cols=90  Identities=13%  Similarity=0.055  Sum_probs=80.1

Q ss_pred             hHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCC
Q 030634           13 LSEHNRKTAEANYAK--DPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCG   90 (174)
Q Consensus        13 ~~~eAl~~~~~al~~--~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG   90 (174)
                      ...++.+.+++++.+  +|.++.++..+|......|++          ++|+..+++|+.++| +..+|..+|.++...|
T Consensus       399 ~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~----------~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G  467 (517)
T PRK10153        399 QLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKT----------DEAYQAINKAIDLEM-SWLNYVLLGKVYELKG  467 (517)
T ss_pred             HHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCH----------HHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcC
Confidence            456677777777774  888999999999999988998          999999999999999 5899999999999999


Q ss_pred             CCccchhhhhcCHHHHHHHHHHHHHhCCCCHHHH
Q 030634           91 FLTADLSEAKGDFDKASECFQRAVDEEPTNELYQ  124 (174)
Q Consensus        91 ~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~~y~  124 (174)
                                 ++++|++.|++|++++|.++.|-
T Consensus       468 -----------~~~eA~~~~~~A~~L~P~~pt~~  490 (517)
T PRK10153        468 -----------DNRLAADAYSTAFNLRPGENTLY  490 (517)
T ss_pred             -----------CHHHHHHHHHHHHhcCCCCchHH
Confidence                       99999999999999999988443

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.73  E-value=2e-07  Score=75.52  Aligned_cols=94  Identities=21%  Similarity=0.293  Sum_probs=87.7

Q ss_pred             hHHhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 030634            7 DFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAH   86 (174)
Q Consensus         7 ~~~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~   86 (174)
                      -||++|...=|+-.+..++.+.|.-|++++.+|.-+...|+|          +.|.+.|.-.+++||...-++.|.|.++
T Consensus        74 lYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~f----------daa~eaFds~~ELDp~y~Ya~lNRgi~~  143 (297)
T COG4785          74 LYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNF----------DAAYEAFDSVLELDPTYNYAHLNRGIAL  143 (297)
T ss_pred             hhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccc----------hHHHHHhhhHhccCCcchHHHhccceee
Confidence            489999999999999999999999999999999999999999          9999999999999999999999999999


Q ss_pred             HhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634           87 TSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (174)
Q Consensus        87 ~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~  121 (174)
                      +.-|           +|.-|.+-+.+-.+-||+++
T Consensus       144 YY~g-----------R~~LAq~d~~~fYQ~D~~DP  167 (297)
T COG4785         144 YYGG-----------RYKLAQDDLLAFYQDDPNDP  167 (297)
T ss_pred             eecC-----------chHhhHHHHHHHHhcCCCCh
Confidence            9988           88888888777777788877

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.73  E-value=3e-08  Score=86.02  Aligned_cols=121  Identities=21%  Similarity=0.277  Sum_probs=106.8

Q ss_pred             HhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHH----------
Q 030634            9 DRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYT----------   78 (174)
Q Consensus         9 ~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a----------   78 (174)
                      .-++++.+|.......+++++.+.++++..|.++...++.          +.|+.+|+++|.++|++..+          
T Consensus       180 ~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~----------~ka~~hf~qal~ldpdh~~sk~~~~~~k~l  249 (486)
T KOG0550|consen  180 AFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNA----------DKAINHFQQALRLDPDHQKSKSASMMPKKL  249 (486)
T ss_pred             hhcccchhHHHHHHHHHhcccchhHHHHhcccccccccch----------HHHHHHHhhhhccChhhhhHHhHhhhHHHH
Confidence            4567899999999999999999999999999999999888          99999999999999997653          


Q ss_pred             --HHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH-------------------------HHHHHHhcCC
Q 030634           79 --LWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE-------------------------LYQKSLEVST  131 (174)
Q Consensus        79 --~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~-------------------------~y~~Al~l~~  131 (174)
                        |-.-|+-.++.|           +|.+|-++|..||.+||+|.                         -+..|+.+++
T Consensus       250 e~~k~~gN~~fk~G-----------~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~  318 (486)
T KOG0550|consen  250 EVKKERGNDAFKNG-----------NYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDS  318 (486)
T ss_pred             HHHHhhhhhHhhcc-----------chhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCH
Confidence              455677777777           99999999999999999997                         4567788888


Q ss_pred             CChHHHHHHHHHHHhcccc
Q 030634          132 KAPELHMELHKHGINQQTL  150 (174)
Q Consensus       132 ~~~~~~~~l~~~~~~~~~~  150 (174)
                      ..+.++..-+++++..+..
T Consensus       319 syikall~ra~c~l~le~~  337 (486)
T KOG0550|consen  319 SYIKALLRRANCHLALEKW  337 (486)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            8888888888888877766

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.72  E-value=1.9e-07  Score=83.84  Aligned_cols=124  Identities=22%  Similarity=0.220  Sum_probs=100.8

Q ss_pred             hhHHhhhhHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHh------
Q 030634            6 SDFDRLLLSEHNRKTAEANYAK--------DPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVI------   71 (174)
Q Consensus         6 ~~~~~~~~~~eAl~~~~~al~~--------~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~l------   71 (174)
                      ..|-.+|+|+.|...++.++++        .|.-.....++|.+|..++++          ++|+..|++|+.+      
T Consensus       207 ~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~----------~eAv~ly~~AL~i~e~~~G  276 (508)
T KOG1840|consen  207 EMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKY----------DEAVNLYEEALTIREEVFG  276 (508)
T ss_pred             HHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccH----------HHHHHHHHHHHHHHHHhcC
Confidence            4678899999999999999999        777777888899999999999          9999999999877      


Q ss_pred             --CCCCHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCC-----CH-----------------------
Q 030634           72 --DPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPT-----NE-----------------------  121 (174)
Q Consensus        72 --dP~~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~-----~~-----------------------  121 (174)
                        +|.-..++.+||.+|...|           +|++|..++++|+++--.     ++                       
T Consensus       277 ~~h~~va~~l~nLa~ly~~~G-----------Kf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~  345 (508)
T KOG1840|consen  277 EDHPAVAATLNNLAVLYYKQG-----------KFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAK  345 (508)
T ss_pred             CCCHHHHHHHHHHHHHHhccC-----------ChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHH
Confidence              5556678999999999999           999999999999887433     11                       


Q ss_pred             -HHHHHHhcC--------CCChHHHHHHHHHHHhcccc
Q 030634          122 -LYQKSLEVS--------TKAPELHMELHKHGINQQTL  150 (174)
Q Consensus       122 -~y~~Al~l~--------~~~~~~~~~l~~~~~~~~~~  150 (174)
                       .+++++++-        +..+..+.|||.++..+|+.
T Consensus       346 ~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~  383 (508)
T KOG1840|consen  346 KLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKY  383 (508)
T ss_pred             HHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcch
Confidence             445555332        24456888999999988887

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=98.70  E-value=2.2e-07  Score=87.14  Aligned_cols=137  Identities=18%  Similarity=0.176  Sum_probs=110.3

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHhCCCC
Q 030634           14 SEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKH-YTLWSLGNAHTSCGFL   92 (174)
Q Consensus        14 ~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~-~a~~~LG~a~~~lG~~   92 (174)
                      .+.|.+.+.-+++..|++.-++...|.+.+.-++|          ..|+.+|++++.++|... +....+|.|+..+|  
T Consensus       146 ~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY----------~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~--  213 (1018)
T KOG2002|consen  146 MDDADAQFHFVLKQSPDNILALLGKARIAYNKKDY----------RGALKYYKKALRINPACKADVRIGIGHCFWKLG--  213 (1018)
T ss_pred             HHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccH----------HHHHHHHHHHHhcCcccCCCccchhhhHHHhcc--
Confidence            57788888888888888888888888888777777          888888888888888865 56677888888888  


Q ss_pred             ccchhhhhcCHHHHHHHHHHHHHhCCCCH------------------------HHHHHHhcCCCChHHHHHHHHHHHhcc
Q 030634           93 TADLSEAKGDFDKASECFQRAVDEEPTNE------------------------LYQKSLEVSTKAPELHMELHKHGINQQ  148 (174)
Q Consensus        93 ~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~------------------------~y~~Al~l~~~~~~~~~~l~~~~~~~~  148 (174)
                               +-+.|+..|.+|+++||.+.                        ...++...++..|.+.+.|++.++..+
T Consensus       214 ---------~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~  284 (1018)
T KOG2002|consen  214 ---------MSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKK  284 (1018)
T ss_pred             ---------chhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcc
Confidence                     88888888888888888776                        445666888888998888888888777


Q ss_pred             cc--------------CCCCchhhHHHHHHHHHhhhc
Q 030634          149 TL--------------GGGSSASSAQVNFCICVHQMK  171 (174)
Q Consensus       149 ~~--------------~~~~~~~~~~~~~~~~~~~~~  171 (174)
                      --              .-+|--++..|+.|-+-|.+|
T Consensus       285 dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~G  321 (1018)
T KOG2002|consen  285 DYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQG  321 (1018)
T ss_pred             cHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhc
Confidence            54              122667788899999999876

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=98.69  E-value=1.5e-07  Score=85.27  Aligned_cols=89  Identities=24%  Similarity=0.206  Sum_probs=85.2

Q ss_pred             hhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCC
Q 030634           12 LLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGF   91 (174)
Q Consensus        12 ~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~   91 (174)
                      +.|...++.++..++..|.+++.+..+|..+..+|+-          ++|-...+.+++.||.++-.|.-+|.++..-. 
T Consensus        21 kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~----------~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK-   89 (700)
T KOG1156|consen   21 KQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKK----------EEAYELVRLGLRNDLKSHVCWHVLGLLQRSDK-   89 (700)
T ss_pred             HHHHhHHHHHHHHHHhCCccchhHHhccchhhcccch----------HHHHHHHHHHhccCcccchhHHHHHHHHhhhh-
Confidence            4688899999999999999999999999999999999          99999999999999999999999999999976 


Q ss_pred             CccchhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634           92 LTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (174)
Q Consensus        92 ~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~  121 (174)
                                +|++|++||+.|+.++|+|.
T Consensus        90 ----------~Y~eaiKcy~nAl~~~~dN~  109 (700)
T KOG1156|consen   90 ----------KYDEAIKCYRNALKIEKDNL  109 (700)
T ss_pred             ----------hHHHHHHHHHHHHhcCCCcH
Confidence                      99999999999999999998

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.62  E-value=1.7e-06  Score=70.92  Aligned_cols=102  Identities=14%  Similarity=0.085  Sum_probs=82.4

Q ss_pred             hhhhHHHHHHHHHHHHhhCCCCHHHH---HHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCH---HHHHHHH
Q 030634           10 RLLLSEHNRKTAEANYAKDPLDADNL---TRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKH---YTLWSLG   83 (174)
Q Consensus        10 ~~~~~~eAl~~~~~al~~~P~~~~a~---~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~---~a~~~LG   83 (174)
                      ..|.|++|++.++.++...|..+.+.   +++|.++...+++          ++|+..+++.++++|+++   .++|.+|
T Consensus        44 ~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y----------~~A~~~~e~fi~~~P~~~~~~~a~Y~~g  113 (243)
T PRK10866         44 QDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADL----------PLAQAAIDRFIRLNPTHPNIDYVLYMRG  113 (243)
T ss_pred             HCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCH----------HHHHHHHHHHHHhCcCCCchHHHHHHHH
Confidence            34799999999999999999987665   9999999999999          999999999999999876   4688999


Q ss_pred             HHHHhCCC--C-----ccchhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634           84 NAHTSCGF--L-----TADLSEAKGDFDKASECFQRAVDEEPTNE  121 (174)
Q Consensus        84 ~a~~~lG~--~-----~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~  121 (174)
                      .++..++.  +     .+..........+|+..|++.++.-|++.
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~  158 (243)
T PRK10866        114 LTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQ  158 (243)
T ss_pred             HhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCCh
Confidence            98766541  0     01111112235689999999999999998

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.62  E-value=6.1e-07  Score=71.24  Aligned_cols=99  Identities=20%  Similarity=0.216  Sum_probs=78.1

Q ss_pred             hhhhHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCH---HHHHHHH
Q 030634           10 RLLLSEHNRKTAEANYAKDPLD---ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKH---YTLWSLG   83 (174)
Q Consensus        10 ~~~~~~eAl~~~~~al~~~P~~---~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~---~a~~~LG   83 (174)
                      +.|.|.+|++.+++++...|++   +++++.+|.++...|++          ++|+..+++.++..|+++   .+++.+|
T Consensus        17 ~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y----------~~A~~~~~~fi~~yP~~~~~~~A~Y~~g   86 (203)
T PF13525_consen   17 QQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDY----------EEAIAAYERFIKLYPNSPKADYALYMLG   86 (203)
T ss_dssp             HCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-H----------HHHHHHHHHHHHH-TT-TTHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHCCCCcchhhHHHHHH
Confidence            5678999999999999998875   78999999999999999          999999999999999977   4789999


Q ss_pred             HHHHhCCCCccch---hhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634           84 NAHTSCGFLTADL---SEAKGDFDKASECFQRAVDEEPTNE  121 (174)
Q Consensus        84 ~a~~~lG~~~~~~---~~a~~~~~~Ai~~~~kAl~l~P~~~  121 (174)
                      .+++.+.   ++.   ........+|+..|+..++.-|++.
T Consensus        87 ~~~~~~~---~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~  124 (203)
T PF13525_consen   87 LSYYKQI---PGILRSDRDQTSTRKAIEEFEELIKRYPNSE  124 (203)
T ss_dssp             HHHHHHH---HHHH-TT---HHHHHHHHHHHHHHHH-TTST
T ss_pred             HHHHHhC---ccchhcccChHHHHHHHHHHHHHHHHCcCch
Confidence            9987753   111   2334457899999999999999998

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.60  E-value=3.6e-07  Score=68.57  Aligned_cols=84  Identities=21%  Similarity=0.278  Sum_probs=67.0

Q ss_pred             HhhhhHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 030634            9 DRLLLSEHNRKTAEANYAKDPLD---ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNA   85 (174)
Q Consensus         9 ~~~~~~~eAl~~~~~al~~~P~~---~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a   85 (174)
                      -..|.|++|...++.++...|+.   +.+.+++|.+++..|++          ++|+..++. +.-.+-.+.++..+|.+
T Consensus        59 ~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~----------d~Al~~L~~-~~~~~~~~~~~~~~Gdi  127 (145)
T PF09976_consen   59 YEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQY----------DEALATLQQ-IPDEAFKALAAELLGDI  127 (145)
T ss_pred             HHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCH----------HHHHHHHHh-ccCcchHHHHHHHHHHH
Confidence            34578888888888888877654   45778888888888888          888888866 34455566777888888


Q ss_pred             HHhCCCCccchhhhhcCHHHHHHHHHHHH
Q 030634           86 HTSCGFLTADLSEAKGDFDKASECFQRAV  114 (174)
Q Consensus        86 ~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl  114 (174)
                      |...|           ++++|+..|++||
T Consensus       128 ~~~~g-----------~~~~A~~~y~~Al  145 (145)
T PF09976_consen  128 YLAQG-----------DYDEARAAYQKAL  145 (145)
T ss_pred             HHHCC-----------CHHHHHHHHHHhC
Confidence            88888           9999999999985

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=98.59  E-value=5.3e-08  Score=56.14  Aligned_cols=34  Identities=21%  Similarity=0.379  Sum_probs=31.4

Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHH
Q 030634           64 KFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASE  108 (174)
Q Consensus        64 ~lekAl~ldP~~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~  108 (174)
                      +|++||+++|+++.+|++||.+|...|           ++++|++
T Consensus         1 ~y~kAie~~P~n~~a~~nla~~~~~~g-----------~~~~A~~   34 (34)
T PF13431_consen    1 CYKKAIELNPNNAEAYNNLANLYLNQG-----------DYEEAIA   34 (34)
T ss_pred             ChHHHHHHCCCCHHHHHHHHHHHHHCc-----------CHHhhcC
Confidence            489999999999999999999999999           9999863

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.58  E-value=1e-06  Score=73.15  Aligned_cols=89  Identities=21%  Similarity=0.213  Sum_probs=74.8

Q ss_pred             CHHHHHHHHHHH-HHhcCcccchhhhhhHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhCCCCccchhhhhcCHHHH
Q 030634           31 DADNLTRWGEAL-LELSQFESVSDSKKIINEAISKFEEALVIDPAK---HYTLWSLGNAHTSCGFLTADLSEAKGDFDKA  106 (174)
Q Consensus        31 ~~~a~~~lg~~l-~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~---~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~A  106 (174)
                      +...++..|..+ ...|++          ++|+..|++.++..|++   +.++|.+|.+|+..|           ++++|
T Consensus       141 ~e~~~Y~~A~~l~~~~~~y----------~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g-----------~~~~A  199 (263)
T PRK10803        141 DANTDYNAAIALVQDKSRQ----------DDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKG-----------KKDDA  199 (263)
T ss_pred             CHHHHHHHHHHHHHhcCCH----------HHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcC-----------CHHHH
Confidence            457888888877 556788          99999999999999999   589999999999999           99999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHhcCCCChHHHHHHHHHHHhcccc
Q 030634          107 SECFQRAVDEEPTNELYQKSLEVSTKAPELHMELHKHGINQQTL  150 (174)
Q Consensus       107 i~~~~kAl~l~P~~~~y~~Al~l~~~~~~~~~~l~~~~~~~~~~  150 (174)
                      +.+|+++++..|++          |..++++..+|.++..+|..
T Consensus       200 ~~~f~~vv~~yP~s----------~~~~dAl~klg~~~~~~g~~  233 (263)
T PRK10803        200 AYYFASVVKNYPKS----------PKAADAMFKVGVIMQDKGDT  233 (263)
T ss_pred             HHHHHHHHHHCCCC----------cchhHHHHHHHHHHHHcCCH
Confidence            99999999999986          44566666677777665543

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=98.58  E-value=2e-07  Score=79.88  Aligned_cols=100  Identities=20%  Similarity=0.105  Sum_probs=93.8

Q ss_pred             hHHhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 030634            7 DFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAH   86 (174)
Q Consensus         7 ~~~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~   86 (174)
                      .|=.+|.|+||+.+|.+++..+|.++..+.+.+.+|+.+++|          ..|..-.+.|+.+|-....||-..|.+-
T Consensus       106 ~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~F----------A~AE~DC~~AiaLd~~Y~KAYSRR~~AR  175 (536)
T KOG4648|consen  106 TYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSF----------AQAEEDCEAAIALDKLYVKAYSRRMQAR  175 (536)
T ss_pred             hhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHH----------HHHHHhHHHHHHhhHHHHHHHHHHHHHH
Confidence            467889999999999999999999999999999999999999          8999999999999999999999999999


Q ss_pred             HhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 030634           87 TSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSL  127 (174)
Q Consensus        87 ~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~~y~~Al  127 (174)
                      ..+|           ...+|.+-++.+|++.|++...++.+
T Consensus       176 ~~Lg-----------~~~EAKkD~E~vL~LEP~~~ELkK~~  205 (536)
T KOG4648|consen  176 ESLG-----------NNMEAKKDCETVLALEPKNIELKKSL  205 (536)
T ss_pred             HHHh-----------hHHHHHHhHHHHHhhCcccHHHHHHH
Confidence            9998           99999999999999999998666654

>TIGR00540 hemY_coli hemY protein

Probab=98.57  E-value=2.6e-06  Score=74.29  Aligned_cols=122  Identities=11%  Similarity=0.037  Sum_probs=94.9

Q ss_pred             HHhhhhHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 030634            8 FDRLLLSEHNRKTAEANYAKDPLDA-DNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAH   86 (174)
Q Consensus         8 ~~~~~~~~eAl~~~~~al~~~P~~~-~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~   86 (174)
                      +.++|.+++|.+.+.++.+..|++. .+....+.+++..|++          ++|+..+++.++..|+++.++..++.++
T Consensus       128 a~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~----------~~Al~~l~~l~~~~P~~~~~l~ll~~~~  197 (409)
T TIGR00540       128 AQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNEL----------HAARHGVDKLLEMAPRHKEVLKLAEEAY  197 (409)
T ss_pred             HHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            4566778888888888877777774 4555567777777777          9999999999999999999999999999


Q ss_pred             HhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH-------------------------HHHHHHhcCC----CChHHH
Q 030634           87 TSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE-------------------------LYQKSLEVST----KAPELH  137 (174)
Q Consensus        87 ~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~-------------------------~y~~Al~l~~----~~~~~~  137 (174)
                      ...|           ++++|++.+.+.++..+.++                         ...++.+..|    +++.++
T Consensus       198 ~~~~-----------d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~  266 (409)
T TIGR00540       198 IRSG-----------AWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALK  266 (409)
T ss_pred             HHHh-----------hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHH
Confidence            9988           99999999999887754433                         1122334455    478888


Q ss_pred             HHHHHHHHhcccc
Q 030634          138 MELHKHGINQQTL  150 (174)
Q Consensus       138 ~~l~~~~~~~~~~  150 (174)
                      ..++..+..+|..
T Consensus       267 ~~~a~~l~~~g~~  279 (409)
T TIGR00540       267 IALAEHLIDCDDH  279 (409)
T ss_pred             HHHHHHHHHCCCh
Confidence            8888888888876

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.56  E-value=9.5e-07  Score=83.76  Aligned_cols=104  Identities=12%  Similarity=0.157  Sum_probs=86.4

Q ss_pred             hhHHhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccch--------hhhhhHHHHHHHHHHHHHhCCCCHH
Q 030634            6 SDFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVS--------DSKKIINEAISKFEEALVIDPAKHY   77 (174)
Q Consensus         6 ~~~~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~--------~~~~~~~eAi~~lekAl~ldP~~~~   77 (174)
                      +.|.+++.+++|++.++.+++.+|+....++.+|.++...+++.+..        ...+.+ .+++.+-+.+...|.+-.
T Consensus        39 ~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv~~l~~~~~~~~~-~~ve~~~~~i~~~~~~k~  117 (906)
T PRK14720         39 DAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLLNLIDSFSQNLKW-AIVEHICDKILLYGENKL  117 (906)
T ss_pred             HHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhhhhhhhcccccch-hHHHHHHHHHHhhhhhhH
Confidence            34668889999999999999999999999999999998888874311        111222 666666666666777779


Q ss_pred             HHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634           78 TLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (174)
Q Consensus        78 a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~  121 (174)
                      |++.||.||-.+|           +.++|...|+++|++||+|+
T Consensus       118 Al~~LA~~Ydk~g-----------~~~ka~~~yer~L~~D~~n~  150 (906)
T PRK14720        118 ALRTLAEAYAKLN-----------ENKKLKGVWERLVKADRDNP  150 (906)
T ss_pred             HHHHHHHHHHHcC-----------ChHHHHHHHHHHHhcCcccH
Confidence            9999999999999           99999999999999999998

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=98.56  E-value=1.4e-07  Score=57.06  Aligned_cols=43  Identities=23%  Similarity=0.233  Sum_probs=40.7

Q ss_pred             HHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 030634           32 ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGN   84 (174)
Q Consensus        32 ~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~   84 (174)
                      |.++..+|.++..+|++          ++|+..|+++++.+|+++.+|..||.
T Consensus         1 p~~~~~la~~~~~~G~~----------~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    1 PAAWLALARAYRRLGQP----------DEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             CHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            46899999999999999          99999999999999999999999985

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.55  E-value=1.3e-06  Score=76.17  Aligned_cols=89  Identities=16%  Similarity=0.156  Sum_probs=75.4

Q ss_pred             hhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCC
Q 030634           12 LLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGF   91 (174)
Q Consensus        12 ~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~   91 (174)
                      .+|+.|+...+++++.+|++.+++...|.++..+|+.          ++|+-.|+.|..+.|-+.+.|-.|-.+|...| 
T Consensus       314 K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~----------~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~-  382 (564)
T KOG1174|consen  314 KKFERALNFVEKCIDSEPRNHEALILKGRLLIALERH----------TQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQK-  382 (564)
T ss_pred             hhHHHHHHHHHHHhccCcccchHHHhccHHHHhccch----------HHHHHHHHHHHhcchhhHHHHHHHHHHHHhhc-
Confidence            4789999999999999999999999999999999999          99999999999999999999999999999888 


Q ss_pred             CccchhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634           92 LTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (174)
Q Consensus        92 ~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~  121 (174)
                                .+.+|......+++.-|+++
T Consensus       383 ----------~~kEA~~~An~~~~~~~~sA  402 (564)
T KOG1174|consen  383 ----------RFKEANALANWTIRLFQNSA  402 (564)
T ss_pred             ----------hHHHHHHHHHHHHHHhhcch
Confidence                      44444444444444444443

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.54  E-value=6.8e-07  Score=77.73  Aligned_cols=84  Identities=15%  Similarity=0.065  Sum_probs=78.1

Q ss_pred             hhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCC
Q 030634           12 LLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGF   91 (174)
Q Consensus        12 ~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~   91 (174)
                      +.++++++.+++.++.+|+|+..+..+|.++...+++          ++|.+.|+++++++|++.. +..++.++..+| 
T Consensus       308 ~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~----------~~A~~~le~al~~~P~~~~-~~~La~~~~~~g-  375 (398)
T PRK10747        308 NNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEW----------QEASLAFRAALKQRPDAYD-YAWLADALDRLH-  375 (398)
T ss_pred             CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcC-
Confidence            6888999999999999999999999999999999999          9999999999999999766 557999999999 


Q ss_pred             CccchhhhhcCHHHHHHHHHHHHHhC
Q 030634           92 LTADLSEAKGDFDKASECFQRAVDEE  117 (174)
Q Consensus        92 ~~~~~~~a~~~~~~Ai~~~~kAl~l~  117 (174)
                                +.++|.++|++++.+-
T Consensus       376 ----------~~~~A~~~~~~~l~~~  391 (398)
T PRK10747        376 ----------KPEEAAAMRRDGLMLT  391 (398)
T ss_pred             ----------CHHHHHHHHHHHHhhh
Confidence                      9999999999998753

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.52  E-value=5.6e-07  Score=84.88  Aligned_cols=97  Identities=26%  Similarity=0.275  Sum_probs=86.0

Q ss_pred             hHHhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcC-cccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 030634            7 DFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQ-FESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNA   85 (174)
Q Consensus         7 ~~~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~-~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a   85 (174)
                      |.=+-..|++|++..+++++.||+|..++.-+|.++..+++ .          ++|.++|..|.++||++.-||-.||+.
T Consensus        11 ~al~nk~YeealEqskkvLk~dpdNYnA~vFLGvAl~sl~q~l----------e~A~ehYv~AaKldpdnlLAWkGL~nL   80 (1238)
T KOG1127|consen   11 DALRNKEYEEALEQSKKVLKEDPDNYNAQVFLGVALWSLGQDL----------EKAAEHYVLAAKLDPDNLLAWKGLGNL   80 (1238)
T ss_pred             HHHhhccHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhccCCH----------HHHHHHHHHHHhcChhhhHHHHHHHHH
Confidence            33455689999999999999999999999999999999988 7          999999999999999999999999999


Q ss_pred             HHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634           86 HTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (174)
Q Consensus        86 ~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~  121 (174)
                      |..-.        ...+++++-.+|++++.+.|+..
T Consensus        81 ye~~~--------dIl~ld~~~~~yq~~~l~le~q~  108 (1238)
T KOG1127|consen   81 YERYN--------DILDLDRAAKCYQRAVLILENQS  108 (1238)
T ss_pred             HHccc--------hhhhhhHhHHHHHHHHHhhhhhh
Confidence            98732        12378999999999999988765

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.52  E-value=2.4e-07  Score=81.80  Aligned_cols=115  Identities=19%  Similarity=0.241  Sum_probs=91.7

Q ss_pred             hHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCC
Q 030634           13 LSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFL   92 (174)
Q Consensus        13 ~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~~   92 (174)
                      +|.+|-.++..++.+|-.++.++.+.|++-+..|++          ++|...|++||.-|....+++||+|..+..+|  
T Consensus       471 ~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~----------dka~~~ykeal~ndasc~ealfniglt~e~~~--  538 (840)
T KOG2003|consen  471 DFADAQQYADIALNIDRYNAAALTNKGNIAFANGDL----------DKAAEFYKEALNNDASCTEALFNIGLTAEALG--  538 (840)
T ss_pred             chhHHHHHHHHHhcccccCHHHhhcCCceeeecCcH----------HHHHHHHHHHHcCchHHHHHHHHhcccHHHhc--
Confidence            678888888888888888888888888888777777          99999999999999999999999999998888  


Q ss_pred             ccchhhhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHhcCCCChHHHHHHHHHHHhcc
Q 030634           93 TADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELHKHGINQQ  148 (174)
Q Consensus        93 ~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~---------------------~y~~Al~l~~~~~~~~~~l~~~~~~~~  148 (174)
                               ++++|++||-|.-.+--++.                     ++.++..+.|.+|...+.|+.+|-.-|
T Consensus       539 ---------~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqeg  606 (840)
T KOG2003|consen  539 ---------NLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEG  606 (840)
T ss_pred             ---------CHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhccc
Confidence                     88888888877665544444                     556666777888888777777764433

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=98.50  E-value=5.2e-07  Score=73.71  Aligned_cols=85  Identities=19%  Similarity=0.168  Sum_probs=80.6

Q ss_pred             hhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCC
Q 030634           11 LLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCG   90 (174)
Q Consensus        11 ~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG   90 (174)
                      -.+|..|+..|.+++.++|..+..|.+.+.+++++.++          +.+..--++|++++|+...++|.||.++....
T Consensus        23 ~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~----------~~v~~dcrralql~~N~vk~h~flg~~~l~s~   92 (284)
T KOG4642|consen   23 PKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHW----------EPVEEDCRRALQLDPNLVKAHYFLGQWLLQSK   92 (284)
T ss_pred             hhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhh----------hhhhhhHHHHHhcChHHHHHHHHHHHHHHhhc
Confidence            34899999999999999999999999999999999999          99999999999999999999999999999977


Q ss_pred             CCccchhhhhcCHHHHHHHHHHHHHh
Q 030634           91 FLTADLSEAKGDFDKASECFQRAVDE  116 (174)
Q Consensus        91 ~~~~~~~~a~~~~~~Ai~~~~kAl~l  116 (174)
                                 .|++||.++++|..+
T Consensus        93 -----------~~~eaI~~Lqra~sl  107 (284)
T KOG4642|consen   93 -----------GYDEAIKVLQRAYSL  107 (284)
T ss_pred             -----------cccHHHHHHHHHHHH
Confidence                       999999999999665

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.50  E-value=2.6e-07  Score=52.45  Aligned_cols=34  Identities=38%  Similarity=0.663  Sum_probs=30.9

Q ss_pred             HHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCC
Q 030634           76 HYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN  120 (174)
Q Consensus        76 ~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~  120 (174)
                      +.+|+++|.+|..+|           ++++|+.+|++|++++|++
T Consensus         1 a~~~~~~g~~~~~~~-----------~~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLG-----------DYEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT------------HHHHHHHHHHHHHHSTTH
T ss_pred             CHHHHHHHHHHHHhC-----------CchHHHHHHHHHHHHCcCC
Confidence            468999999999999           9999999999999999975

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.50  E-value=1.1e-06  Score=76.63  Aligned_cols=110  Identities=18%  Similarity=0.139  Sum_probs=59.7

Q ss_pred             HhhhhHHHHHHHHHHHHhhCCCCHHHHHHHH-HHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 030634            9 DRLLLSEHNRKTAEANYAKDPLDADNLTRWG-EALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT   87 (174)
Q Consensus         9 ~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg-~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~   87 (174)
                      =-.++++||.-.++.+++.-|+++.++..+| .++.....         +-++|.+.++++|+++|....|-..++..+.
T Consensus       379 LA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~---------~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~  449 (564)
T KOG1174|consen  379 LAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPR---------MREKAKKFAEKSLKINPIYTPAVNLIAELCQ  449 (564)
T ss_pred             HhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCch---------hHHHHHHHHHhhhccCCccHHHHHHHHHHHH
Confidence            3445666666666666666666666666665 44433211         0155666666666666666655555555555


Q ss_pred             hCCC----------------------CccchhhhhcCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 030634           88 SCGF----------------------LTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSL  127 (174)
Q Consensus        88 ~lG~----------------------~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~~y~~Al  127 (174)
                      .-|+                      ..++...|...+.+|+++|.+||++||++..-.+.+
T Consensus       450 ~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl  511 (564)
T KOG1174|consen  450 VEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGL  511 (564)
T ss_pred             hhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHH
Confidence            5441                      001222223366666666666666666666544444

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.50  E-value=1.3e-06  Score=80.48  Aligned_cols=109  Identities=20%  Similarity=0.097  Sum_probs=88.2

Q ss_pred             HHhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 030634            8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT   87 (174)
Q Consensus         8 ~~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~   87 (174)
                      |-..+.-++|.-+..++..++|..+..|+..|.++...|++          ++|.+.|..|+.+||+++.+...+|.++.
T Consensus       660 ~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~----------~EA~~af~~Al~ldP~hv~s~~Ala~~ll  729 (799)
T KOG4162|consen  660 FLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQL----------EEAKEAFLVALALDPDHVPSMTALAELLL  729 (799)
T ss_pred             HHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhh----------HHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence            44556778888899999999999999999999999988888          99999999999999999999999999999


Q ss_pred             hCCCCccchhhhhcCHHHHHH--HHHHHHHhCCCCHHHHHHHhcCCCChHHHHHHHHHHHhcccc
Q 030634           88 SCGFLTADLSEAKGDFDKASE--CFQRAVDEEPTNELYQKSLEVSTKAPELHMELHKHGINQQTL  150 (174)
Q Consensus        88 ~lG~~~~~~~~a~~~~~~Ai~--~~~kAl~l~P~~~~y~~Al~l~~~~~~~~~~l~~~~~~~~~~  150 (174)
                      ..|           +-.-|.+  ....             +++++|..+++|+++|.+...+|..
T Consensus       730 e~G-----------~~~la~~~~~L~d-------------alr~dp~n~eaW~~LG~v~k~~Gd~  770 (799)
T KOG4162|consen  730 ELG-----------SPRLAEKRSLLSD-------------ALRLDPLNHEAWYYLGEVFKKLGDS  770 (799)
T ss_pred             HhC-----------CcchHHHHHHHHH-------------HHhhCCCCHHHHHHHHHHHHHccch
Confidence            988           3333333  4444             5566666788888888888888876

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.49  E-value=1e-06  Score=76.30  Aligned_cols=93  Identities=18%  Similarity=0.252  Sum_probs=79.9

Q ss_pred             HHhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 030634            8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT   87 (174)
Q Consensus         8 ~~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~   87 (174)
                      +=.|+.|.+|+..+.+++.++|+|+.++++.|.++..+|++          +.|+..|++|++++|+|..+...|..+..
T Consensus       267 ~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~----------~~A~~df~ka~k~~P~Nka~~~el~~l~~  336 (397)
T KOG0543|consen  267 YLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEY----------DLARDDFQKALKLEPSNKAARAELIKLKQ  336 (397)
T ss_pred             HHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccH----------HHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            34678999999999999999999999999999999999999          99999999999999999999988888776


Q ss_pred             hCCCCccchhhhhcCHHHHHHHHHHHHHhCCCC
Q 030634           88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTN  120 (174)
Q Consensus        88 ~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~  120 (174)
                      ...          ...++..+.|.+.+..-+..
T Consensus       337 k~~----------~~~~kekk~y~~mF~k~~~~  359 (397)
T KOG0543|consen  337 KIR----------EYEEKEKKMYANMFAKLAEE  359 (397)
T ss_pred             HHH----------HHHHHHHHHHHHHhhccccc
Confidence            643          23455688888887765543

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.49  E-value=3.3e-06  Score=75.95  Aligned_cols=99  Identities=17%  Similarity=0.183  Sum_probs=76.5

Q ss_pred             HHhhhhHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHhcCccc-----------------------------
Q 030634            8 FDRLLLSEHNRKTAEANYAK--------DPLDADNLTRWGEALLELSQFES-----------------------------   50 (174)
Q Consensus         8 ~~~~~~~~eAl~~~~~al~~--------~P~~~~a~~~lg~~l~~~g~~~~-----------------------------   50 (174)
                      |-.++.|.+|...|++|+.+        +|.-+.++.+||.+|...|++.+                             
T Consensus       251 y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~  330 (508)
T KOG1840|consen  251 YRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSE  330 (508)
T ss_pred             HHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHH
Confidence            55677888888888888874        56666778888888888888754                             


Q ss_pred             ---chhhhhhHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhC
Q 030634           51 ---VSDSKKIINEAISKFEEALVI--------DPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEE  117 (174)
Q Consensus        51 ---~~~~~~~~~eAi~~lekAl~l--------dP~~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~  117 (174)
                         .....+.+++|+..+++++++        +|.-+..+.+||.+|..+|           +|++|.+.|++|+.+.
T Consensus       331 ~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~g-----------k~~ea~~~~k~ai~~~  397 (508)
T KOG1840|consen  331 LAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMG-----------KYKEAEELYKKAIQIL  397 (508)
T ss_pred             HHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhc-----------chhHHHHHHHHHHHHH
Confidence               112245579999999998877        2233567889999999999           9999999999999886

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=98.48  E-value=1.6e-06  Score=80.86  Aligned_cols=93  Identities=16%  Similarity=0.187  Sum_probs=89.1

Q ss_pred             hHHhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 030634            7 DFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAH   86 (174)
Q Consensus         7 ~~~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~   86 (174)
                      -|+++|..+.++...-.|-.++|+|.+.|..++....++|.+          ++|+-+|.+||+.+|.+....+..+.+|
T Consensus       182 IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i----------~qA~~cy~rAI~~~p~n~~~~~ers~L~  251 (895)
T KOG2076|consen  182 IYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNI----------NQARYCYSRAIQANPSNWELIYERSSLY  251 (895)
T ss_pred             HHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccH----------HHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence            489999999999999999999999999999999999999888          9999999999999999999999999999


Q ss_pred             HhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCC
Q 030634           87 TSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN  120 (174)
Q Consensus        87 ~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~  120 (174)
                      .++|           ++..|++.|++.+.++|..
T Consensus       252 ~~~G-----------~~~~Am~~f~~l~~~~p~~  274 (895)
T KOG2076|consen  252 QKTG-----------DLKRAMETFLQLLQLDPPV  274 (895)
T ss_pred             HHhC-----------hHHHHHHHHHHHHhhCCch
Confidence            9999           9999999999999999933

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.48  E-value=6.5e-07  Score=82.09  Aligned_cols=91  Identities=16%  Similarity=0.134  Sum_probs=80.4

Q ss_pred             hhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhC
Q 030634           10 RLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSC   89 (174)
Q Consensus        10 ~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~l   89 (174)
                      +.++|.++.+.++..++++|-....|+.+|.+..+.+++          +.|..+|.+++.++|++.++|.|++.+|..+
T Consensus       497 ~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~----------q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~  566 (777)
T KOG1128|consen  497 SNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKE----------QAAVKAFHRCVTLEPDNAEAWNNLSTAYIRL  566 (777)
T ss_pred             cchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhh----------HHHHHHHHHHhhcCCCchhhhhhhhHHHHHH
Confidence            357899999999999999999999999999999999999          9999999999999999999999999999998


Q ss_pred             CCCccchhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634           90 GFLTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (174)
Q Consensus        90 G~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~  121 (174)
                      |           +-.+|-..+++|++-|-++.
T Consensus       567 ~-----------~k~ra~~~l~EAlKcn~~~w  587 (777)
T KOG1128|consen  567 K-----------KKKRAFRKLKEALKCNYQHW  587 (777)
T ss_pred             h-----------hhHHHHHHHHHHhhcCCCCC
Confidence            8           66666666666666664443

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.48  E-value=1.2e-06  Score=68.74  Aligned_cols=77  Identities=21%  Similarity=0.211  Sum_probs=62.8

Q ss_pred             HhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccch-hhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 030634            9 DRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVS-DSKKIINEAISKFEEALVIDPAKHYTLWSLGNA   85 (174)
Q Consensus         9 ~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~-~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a   85 (174)
                      ++...+++|+.-+++|+.++|+..++++.||+++...+...+.. ++..-+++|..+|++|...+|++...+..|..+
T Consensus        46 es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~  123 (186)
T PF06552_consen   46 ESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMA  123 (186)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence            66789999999999999999999999999999999999865544 566779999999999999999999877776655

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=98.47  E-value=1.4e-06  Score=79.03  Aligned_cols=72  Identities=17%  Similarity=0.084  Sum_probs=64.0

Q ss_pred             HhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 030634            9 DRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTS   88 (174)
Q Consensus         9 ~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~   88 (174)
                      -.+|+-++|....+.+++.||.+..+|+.+|.++....+|          ++||++|+.|++++|+|..+|..|+.....
T Consensus        52 ~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y----------~eaiKcy~nAl~~~~dN~qilrDlslLQ~Q  121 (700)
T KOG1156|consen   52 NCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKY----------DEAIKCYRNALKIEKDNLQILRDLSLLQIQ  121 (700)
T ss_pred             hcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhH----------HHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            3577889999999999999999999999999999887777          999999999999999999999999888887


Q ss_pred             CC
Q 030634           89 CG   90 (174)
Q Consensus        89 lG   90 (174)
                      ++
T Consensus       122 mR  123 (700)
T KOG1156|consen  122 MR  123 (700)
T ss_pred             HH
Confidence            77

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.46  E-value=1.4e-06  Score=76.91  Aligned_cols=99  Identities=20%  Similarity=0.108  Sum_probs=81.8

Q ss_pred             HhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 030634            9 DRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTS   88 (174)
Q Consensus         9 ~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~   88 (174)
                      -..++.++|.+.+++++.++|+.+-.+.++|.+|++.|++          ++||..+...+.-+|+++..|..|+.+|..
T Consensus       351 ~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~----------~eai~~L~~~~~~~p~dp~~w~~LAqay~~  420 (484)
T COG4783         351 LEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKP----------QEAIRILNRYLFNDPEDPNGWDLLAQAYAE  420 (484)
T ss_pred             HHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCCh----------HHHHHHHHHHhhcCCCCchHHHHHHHHHHH
Confidence            3457899999999999999999999999999999999999          999999999999999999999999999999


Q ss_pred             CCC------CccchhhhhcCHHHHHHHHHHHHHhC
Q 030634           89 CGF------LTADLSEAKGDFDKASECFQRAVDEE  117 (174)
Q Consensus        89 lG~------~~~~~~~a~~~~~~Ai~~~~kAl~l~  117 (174)
                      +|.      .+++..--.|++++|+..+.+|.+..
T Consensus       421 ~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~~  455 (484)
T COG4783         421 LGNRAEALLARAEGYALAGRLEQAIIFLMRASQQV  455 (484)
T ss_pred             hCchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence            991      12233333455566666666555544

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.45  E-value=4.1e-06  Score=69.29  Aligned_cols=96  Identities=18%  Similarity=0.201  Sum_probs=86.6

Q ss_pred             hhhhHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCC---HHHHHHHH
Q 030634           10 RLLLSEHNRKTAEANYAKDPLD---ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAK---HYTLWSLG   83 (174)
Q Consensus        10 ~~~~~~eAl~~~~~al~~~P~~---~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~---~~a~~~LG   83 (174)
                      ..|.|.+|...|+.-++..|++   +.+++|||.+++.+|++          ++|...|..+++-.|++   |++++.||
T Consensus       153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y----------~~Aa~~f~~~~k~~P~s~KApdallKlg  222 (262)
T COG1729         153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDY----------EDAAYIFARVVKDYPKSPKAPDALLKLG  222 (262)
T ss_pred             HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccc----------hHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence            4567999999999999999985   78999999999999999          99999999999997775   57899999


Q ss_pred             HHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCHHHHHH
Q 030634           84 NAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKS  126 (174)
Q Consensus        84 ~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~~y~~A  126 (174)
                      .+...+|           +.++|-..|++.++.-|+....+.+
T Consensus       223 ~~~~~l~-----------~~d~A~atl~qv~k~YP~t~aA~~A  254 (262)
T COG1729         223 VSLGRLG-----------NTDEACATLQQVIKRYPGTDAAKLA  254 (262)
T ss_pred             HHHHHhc-----------CHHHHHHHHHHHHHHCCCCHHHHHH
Confidence            9999999           9999999999999999998854443

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.45  E-value=2.9e-06  Score=62.56  Aligned_cols=69  Identities=25%  Similarity=0.293  Sum_probs=61.9

Q ss_pred             HHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhCCCCccchhhhhcCHHHHHH
Q 030634           32 ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAK---HYTLWSLGNAHTSCGFLTADLSEAKGDFDKASE  108 (174)
Q Consensus        32 ~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~---~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~  108 (174)
                      |.+++.+|.++..+|+.          ++|+..|++++...++.   ..+++.+|.++..+|           ++++|+.
T Consensus         1 ~~~~~~~A~a~d~~G~~----------~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG-----------~~deA~~   59 (120)
T PF12688_consen    1 PRALYELAWAHDSLGRE----------EEAIPLYRRALAAGLSGADRRRALIQLASTLRNLG-----------RYDEALA   59 (120)
T ss_pred             CchHHHHHHHHHhcCCH----------HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcC-----------CHHHHHH
Confidence            46789999999999999          99999999999986555   568999999999999           9999999


Q ss_pred             HHHHHHHhCCCCH
Q 030634          109 CFQRAVDEEPTNE  121 (174)
Q Consensus       109 ~~~kAl~l~P~~~  121 (174)
                      .+++++...|++.
T Consensus        60 ~L~~~~~~~p~~~   72 (120)
T PF12688_consen   60 LLEEALEEFPDDE   72 (120)
T ss_pred             HHHHHHHHCCCcc
Confidence            9999999888744

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.44  E-value=3.8e-06  Score=63.62  Aligned_cols=108  Identities=16%  Similarity=0.126  Sum_probs=86.8

Q ss_pred             hhhhHHHHHHHHHHHHhhCCC---CHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHH---HHHHHH
Q 030634           10 RLLLSEHNRKTAEANYAKDPL---DADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHY---TLWSLG   83 (174)
Q Consensus        10 ~~~~~~eAl~~~~~al~~~P~---~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~---a~~~LG   83 (174)
                      +.+.|++|++.++......|.   ..++...+|.+++..+++          ++|+..+++-|+++|+++.   ++|..|
T Consensus        22 ~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y----------~~A~a~~~rFirLhP~hp~vdYa~Y~~g   91 (142)
T PF13512_consen   22 QKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDY----------EEAIAAYDRFIRLHPTHPNVDYAYYMRG   91 (142)
T ss_pred             HhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCH----------HHHHHHHHHHHHhCCCCCCccHHHHHHH
Confidence            346899999999999998876   578999999999999999          9999999999999999885   688899


Q ss_pred             HHHHhCCC--C--ccchhhhhcCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 030634           84 NAHTSCGF--L--TADLSEAKGDFDKASECFQRAVDEEPTNELYQKSL  127 (174)
Q Consensus        84 ~a~~~lG~--~--~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~~y~~Al  127 (174)
                      .+++.+.+  +  ........+...+|...|++.++.-|++.....|-
T Consensus        92 L~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~dA~  139 (142)
T PF13512_consen   92 LSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAADAR  139 (142)
T ss_pred             HHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHHHHH
Confidence            99988751  0  00122222347889999999999999988655543

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.44  E-value=6.2e-07  Score=50.49  Aligned_cols=34  Identities=29%  Similarity=0.574  Sum_probs=31.1

Q ss_pred             HHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCC
Q 030634           76 HYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN  120 (174)
Q Consensus        76 ~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~  120 (174)
                      +.+|+.+|.++..+|           ++++|+++|+++++++|+|
T Consensus         1 a~~~~~lg~~~~~~~-----------~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    1 AEAWYYLGQAYYQLG-----------NYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT------------HHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHHhC-----------CHHHHHHHHHHHHHHCcCC
Confidence            468999999999999           9999999999999999986

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.42  E-value=2.6e-06  Score=80.51  Aligned_cols=118  Identities=15%  Similarity=0.112  Sum_probs=106.1

Q ss_pred             hhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCC
Q 030634           12 LLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGF   91 (174)
Q Consensus        12 ~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~   91 (174)
                      ...+.|+..+.+++++||+.+.+|..+|.+|...-+.          ..|..+|++|.++||.+.+++-.++..|.... 
T Consensus       472 K~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm----------~RA~kCf~KAFeLDatdaeaaaa~adtyae~~-  540 (1238)
T KOG1127|consen  472 KNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDM----------KRAKKCFDKAFELDATDAEAAAASADTYAEES-  540 (1238)
T ss_pred             hhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHH----------HHHHHHHHHHhcCCchhhhhHHHHHHHhhccc-
Confidence            3567899999999999999999999999999887666          99999999999999999999999999999977 


Q ss_pred             CccchhhhhcCHHHHHHHHHHHHHhCCCCH-----------------------HHHHHHhcCCCChHHHHHHHHHHHhcc
Q 030634           92 LTADLSEAKGDFDKASECFQRAVDEEPTNE-----------------------LYQKSLEVSTKAPELHMELHKHGINQQ  148 (174)
Q Consensus        92 ~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~-----------------------~y~~Al~l~~~~~~~~~~l~~~~~~~~  148 (174)
                                +.+.|....-++-+.+|...                       .++-|++.+|++...+..+|..|-..|
T Consensus       541 ----------~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sG  610 (1238)
T KOG1127|consen  541 ----------TWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESG  610 (1238)
T ss_pred             ----------cHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcC
Confidence                      88888888777777666544                       789999999999999999999999999


Q ss_pred             cc
Q 030634          149 TL  150 (174)
Q Consensus       149 ~~  150 (174)
                      |-
T Consensus       611 ry  612 (1238)
T KOG1127|consen  611 RY  612 (1238)
T ss_pred             ce
Confidence            98

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.35  E-value=1e-05  Score=69.53  Aligned_cols=89  Identities=10%  Similarity=0.129  Sum_probs=83.5

Q ss_pred             hhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCC
Q 030634           12 LLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGF   91 (174)
Q Consensus        12 ~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~   91 (174)
                      |...-|+......+++.|=++..+...+.||...|+.          ..||.-++.+-++..++.+.+|.++..++..| 
T Consensus       169 GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~----------k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vg-  237 (504)
T KOG0624|consen  169 GDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEP----------KKAIHDLKQASKLSQDNTEGHYKISQLLYTVG-  237 (504)
T ss_pred             CchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcH----------HHHHHHHHHHHhccccchHHHHHHHHHHHhhh-
Confidence            4567788888999999999999999999999999998          99999999999999999999999999999999 


Q ss_pred             CccchhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634           92 LTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (174)
Q Consensus        92 ~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~  121 (174)
                                +.+.++.-.+.+|++||++.
T Consensus       238 ----------d~~~sL~~iRECLKldpdHK  257 (504)
T KOG0624|consen  238 ----------DAENSLKEIRECLKLDPDHK  257 (504)
T ss_pred             ----------hHHHHHHHHHHHHccCcchh
Confidence                      99999999999999999987

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.33  E-value=1.6e-05  Score=59.49  Aligned_cols=105  Identities=19%  Similarity=0.130  Sum_probs=84.9

Q ss_pred             hhhHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCC---HHHHHHHHH
Q 030634           11 LLLSEHNRKTAEANYAKDPLD---ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAK---HYTLWSLGN   84 (174)
Q Consensus        11 ~~~~~eAl~~~~~al~~~P~~---~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~---~~a~~~LG~   84 (174)
                      .+....+...++..+..+|+.   ..+.+.+|.++...|++          ++|+..|++++...|+.   +.+.+.|+.
T Consensus        24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~----------~~A~~~l~~~~~~~~d~~l~~~a~l~LA~   93 (145)
T PF09976_consen   24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDY----------DEAKAALEKALANAPDPELKPLARLRLAR   93 (145)
T ss_pred             CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence            446677777888899999998   67788899999999999          99999999999988776   457889999


Q ss_pred             HHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCHHHHHHHhcCCCChHHHHHHHHHHHhcccc
Q 030634           85 AHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLEVSTKAPELHMELHKHGINQQTL  150 (174)
Q Consensus        85 a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~~y~~Al~l~~~~~~~~~~l~~~~~~~~~~  150 (174)
                      ++...|           +|++|+..++.    .|+          .+-.+..+.-+|.++..+|..
T Consensus        94 ~~~~~~-----------~~d~Al~~L~~----~~~----------~~~~~~~~~~~Gdi~~~~g~~  134 (145)
T PF09976_consen   94 ILLQQG-----------QYDEALATLQQ----IPD----------EAFKALAAELLGDIYLAQGDY  134 (145)
T ss_pred             HHHHcC-----------CHHHHHHHHHh----ccC----------cchHHHHHHHHHHHHHHCCCH
Confidence            999998           99999999866    121          122355677788888888764

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=98.32  E-value=9.6e-06  Score=74.22  Aligned_cols=101  Identities=15%  Similarity=0.098  Sum_probs=83.1

Q ss_pred             hhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchh------------------------hhhhHHHHHHHH
Q 030634           10 RLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSD------------------------SKKIINEAISKF   65 (174)
Q Consensus        10 ~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~------------------------~~~~~~eAi~~l   65 (174)
                      -|+..++|++.++++++..|.....|..+|.++-.+++.+.+.+                        ..+.+-.|..+|
T Consensus       663 ~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~il  742 (913)
T KOG0495|consen  663 YLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSIL  742 (913)
T ss_pred             HhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHH
Confidence            36789999999999999999999999999999988888743221                        234567888888


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634           66 EEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (174)
Q Consensus        66 ekAl~ldP~~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~  121 (174)
                      +++.-.||++...|...-.+-...|           +.++|.....+||+.=|++.
T Consensus       743 drarlkNPk~~~lwle~Ir~ElR~g-----------n~~~a~~lmakALQecp~sg  787 (913)
T KOG0495|consen  743 DRARLKNPKNALLWLESIRMELRAG-----------NKEQAELLMAKALQECPSSG  787 (913)
T ss_pred             HHHHhcCCCcchhHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhCCccc
Confidence            8888888888888887777777777           88888888888888888876

>PRK15331 chaperone protein SicA; Provisional

Probab=98.32  E-value=8.7e-06  Score=63.06  Aligned_cols=77  Identities=14%  Similarity=0.023  Sum_probs=69.7

Q ss_pred             HHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCccchhhhhcCH
Q 030634           24 NYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDF  103 (174)
Q Consensus        24 al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~~~~~~~~a~~~~  103 (174)
                      +..+.++..+..+..|.-+...|++          ++|...|+-....||.+++.|+.||.|+..++           +|
T Consensus        29 l~gis~~~le~iY~~Ay~~y~~Gk~----------~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k-----------~y   87 (165)
T PRK15331         29 VHGIPQDMMDGLYAHAYEFYNQGRL----------DEAETFFRFLCIYDFYNPDYTMGLAAVCQLKK-----------QF   87 (165)
T ss_pred             HhCCCHHHHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHH-----------HH
Confidence            4446777788999999999999999          99999999999999999999999999999988           99


Q ss_pred             HHHHHHHHHHHHhCCCCH
Q 030634          104 DKASECFQRAVDEEPTNE  121 (174)
Q Consensus       104 ~~Ai~~~~kAl~l~P~~~  121 (174)
                      ++|+..|..|..++++++
T Consensus        88 ~~Ai~~Y~~A~~l~~~dp  105 (165)
T PRK15331         88 QKACDLYAVAFTLLKNDY  105 (165)
T ss_pred             HHHHHHHHHHHHcccCCC
Confidence            999999999888887766

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=98.31  E-value=7e-07  Score=78.70  Aligned_cols=95  Identities=18%  Similarity=0.171  Sum_probs=89.0

Q ss_pred             hhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCC
Q 030634           12 LLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGF   91 (174)
Q Consensus        12 ~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~   91 (174)
                      ..|+.|+..|.+|++++|+.+..+.+.+.+++..+.+          ..|+.-+.+|++++|....+|+..|.+.+.++ 
T Consensus        18 ~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~----------~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~-   86 (476)
T KOG0376|consen   18 KVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESF----------GGALHDALKAIELDPTYIKAYVRRGTAVMALG-   86 (476)
T ss_pred             chHHHHHHHHHHHHhcCCcceeeechhhhhheeechh----------hhHHHHHHhhhhcCchhhheeeeccHHHHhHH-
Confidence            3789999999999999999999999999999999999          99999999999999999999999999999998 


Q ss_pred             CccchhhhhcCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 030634           92 LTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSL  127 (174)
Q Consensus        92 ~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~~y~~Al  127 (174)
                                .+.+|+..|++...+.|+...+++.+
T Consensus        87 ----------~~~~A~~~l~~~~~l~Pnd~~~~r~~  112 (476)
T KOG0376|consen   87 ----------EFKKALLDLEKVKKLAPNDPDATRKI  112 (476)
T ss_pred             ----------HHHHHHHHHHHhhhcCcCcHHHHHHH
Confidence                      99999999999999999998544443

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.30  E-value=1.1e-05  Score=71.44  Aligned_cols=138  Identities=17%  Similarity=0.020  Sum_probs=107.1

Q ss_pred             hhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCC
Q 030634           12 LLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGF   91 (174)
Q Consensus        12 ~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~   91 (174)
                      |.++.|...|++++.-|....++++++|..+-.+|+.          ++|+.+|-+.-.+--++.+.++.++++|..+. 
T Consensus       504 gd~dka~~~ykeal~ndasc~ealfniglt~e~~~~l----------deald~f~klh~il~nn~evl~qianiye~le-  572 (840)
T KOG2003|consen  504 GDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNL----------DEALDCFLKLHAILLNNAEVLVQIANIYELLE-  572 (840)
T ss_pred             CcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCH----------HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh-
Confidence            5688899999999999999999999999999999998          99999999988888889999999999998877 


Q ss_pred             CccchhhhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHhcCCCChHHHHHHHHHHHhcccc
Q 030634           92 LTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELHKHGINQQTL  150 (174)
Q Consensus        92 ~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~---------------------~y~~Al~l~~~~~~~~~~l~~~~~~~~~~  150 (174)
                                +..+|++++-++..+=|+++                     ++-...+..|-..+.-..|+.-|+.-+--
T Consensus       573 ----------d~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~  642 (840)
T KOG2003|consen  573 ----------DPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFS  642 (840)
T ss_pred             ----------CHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHH
Confidence                      99999999999999999988                     23334456666677666666666543322


Q ss_pred             -----------CCCCchhhHHHHHHHHHhhh
Q 030634          151 -----------GGGSSASSAQVNFCICVHQM  170 (174)
Q Consensus       151 -----------~~~~~~~~~~~~~~~~~~~~  170 (174)
                                 -..|.-+.-|.=.+-|+.+-
T Consensus       643 ekai~y~ekaaliqp~~~kwqlmiasc~rrs  673 (840)
T KOG2003|consen  643 EKAINYFEKAALIQPNQSKWQLMIASCFRRS  673 (840)
T ss_pred             HHHHHHHHHHHhcCccHHHHHHHHHHHHHhc
Confidence                       22255555555555565543

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.30  E-value=1.3e-06  Score=59.52  Aligned_cols=53  Identities=26%  Similarity=0.466  Sum_probs=46.2

Q ss_pred             hhHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCC
Q 030634           56 KIINEAISKFEEALVIDPA--KHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN  120 (174)
Q Consensus        56 ~~~~eAi~~lekAl~ldP~--~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~  120 (174)
                      +.+++|+..++++++.+|+  +...++.+|.+|+..|           +|++|+..+++ ++.+|.+
T Consensus         3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~-----------~y~~A~~~~~~-~~~~~~~   57 (84)
T PF12895_consen    3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQG-----------KYEEAIELLQK-LKLDPSN   57 (84)
T ss_dssp             T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTT-----------HHHHHHHHHHC-HTHHHCH
T ss_pred             ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCC-----------CHHHHHHHHHH-hCCCCCC
Confidence            4559999999999999996  5677889999999999           99999999999 7777765

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.28  E-value=2e-05  Score=68.96  Aligned_cols=87  Identities=21%  Similarity=0.132  Sum_probs=72.6

Q ss_pred             hhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCC
Q 030634           11 LLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCG   90 (174)
Q Consensus        11 ~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG   90 (174)
                      .+++++|+..+++..+.+|.   +...++.++...++-          .+|+..+.++++.+|.+...+..-+..+...|
T Consensus       182 t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E----------~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~  248 (395)
T PF09295_consen  182 TQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEE----------VEAIRLLNEALKENPQDSELLNLQAEFLLSKK  248 (395)
T ss_pred             cccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence            45788999999998888865   566788888877766          89999999999999999888888888888877


Q ss_pred             CCccchhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634           91 FLTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (174)
Q Consensus        91 ~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~  121 (174)
                                 +++.|+.+.++|+++.|++.
T Consensus       249 -----------~~~lAL~iAk~av~lsP~~f  268 (395)
T PF09295_consen  249 -----------KYELALEIAKKAVELSPSEF  268 (395)
T ss_pred             -----------CHHHHHHHHHHHHHhCchhH
Confidence                       99999998888877777654

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.28  E-value=7.8e-06  Score=71.51  Aligned_cols=81  Identities=19%  Similarity=0.269  Sum_probs=75.6

Q ss_pred             hhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhC
Q 030634           10 RLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSC   89 (174)
Q Consensus        10 ~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~l   89 (174)
                      .++.-.+|++...+++..+|.+++.+...+..++..+++          +.|+.+.++++++.|++...|+.|+.+|..+
T Consensus       212 ~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~----------~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~  281 (395)
T PF09295_consen  212 LMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKY----------ELALEIAKKAVELSPSEFETWYQLAECYIQL  281 (395)
T ss_pred             hcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCH----------HHHHHHHHHHHHhCchhHHHHHHHHHHHHhc
Confidence            345678999999999999999999999999999999999          9999999999999999999999999999999


Q ss_pred             CCCccchhhhhcCHHHHHHHHH
Q 030634           90 GFLTADLSEAKGDFDKASECFQ  111 (174)
Q Consensus        90 G~~~~~~~~a~~~~~~Ai~~~~  111 (174)
                      |           ++++|+..+.
T Consensus       282 ~-----------d~e~ALlaLN  292 (395)
T PF09295_consen  282 G-----------DFENALLALN  292 (395)
T ss_pred             C-----------CHHHHHHHHh
Confidence            9           9999997555

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.28  E-value=8.7e-06  Score=66.69  Aligned_cols=71  Identities=18%  Similarity=0.165  Sum_probs=66.2

Q ss_pred             CCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHH---HHHHHHHHhCCCCccchhhhhcCHHHH
Q 030634           30 LDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTL---WSLGNAHTSCGFLTADLSEAKGDFDKA  106 (174)
Q Consensus        30 ~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~---~~LG~a~~~lG~~~~~~~~a~~~~~~A  106 (174)
                      .+++.++..|..+...|++          ++|+..|++++...|..+.+.   +.+|.+|...|           +|++|
T Consensus        30 ~~~~~~Y~~A~~~~~~g~y----------~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~-----------~y~~A   88 (243)
T PRK10866         30 NPPSEIYATAQQKLQDGNW----------KQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNA-----------DLPLA   88 (243)
T ss_pred             CCHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcC-----------CHHHH
Confidence            3788899999999999999          999999999999999998765   89999999998           99999


Q ss_pred             HHHHHHHHHhCCCCH
Q 030634          107 SECFQRAVDEEPTNE  121 (174)
Q Consensus       107 i~~~~kAl~l~P~~~  121 (174)
                      +.+|++.+++.|+++
T Consensus        89 ~~~~e~fi~~~P~~~  103 (243)
T PRK10866         89 QAAIDRFIRLNPTHP  103 (243)
T ss_pred             HHHHHHHHHhCcCCC
Confidence            999999999999987

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.26  E-value=1.5e-06  Score=49.21  Aligned_cols=34  Identities=29%  Similarity=0.604  Sum_probs=31.0

Q ss_pred             HHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCC
Q 030634           32 ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAK   75 (174)
Q Consensus        32 ~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~   75 (174)
                      +.+|+++|.++..+|++          ++|+.+|++|++++|++
T Consensus         1 a~~~~~~g~~~~~~~~~----------~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLGDY----------EEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-H----------HHHHHHHHHHHHHSTTH
T ss_pred             CHHHHHHHHHHHHhCCc----------hHHHHHHHHHHHHCcCC
Confidence            57899999999999999          99999999999999984

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.26  E-value=5.5e-06  Score=73.07  Aligned_cols=54  Identities=9%  Similarity=-0.122  Sum_probs=51.3

Q ss_pred             HHhhhhHHHHHHHHHHHHhhCCCCHHH---HHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHh
Q 030634            8 FDRLLLSEHNRKTAEANYAKDPLDADN---LTRWGEALLELSQFESVSDSKKIINEAISKFEEALVI   71 (174)
Q Consensus         8 ~~~~~~~~eAl~~~~~al~~~P~~~~a---~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~l   71 (174)
                      |-.+++|++|+..|+++++++|+++++   |+++|.+|..+|++          ++|+.++++|+++
T Consensus        85 L~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~----------dEAla~LrrALel  141 (453)
T PLN03098         85 LFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEG----------KKAADCLRTALRD  141 (453)
T ss_pred             HHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHh
Confidence            567899999999999999999999965   99999999999999          9999999999998

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.22  E-value=5e-06  Score=69.86  Aligned_cols=91  Identities=22%  Similarity=0.157  Sum_probs=68.1

Q ss_pred             hHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCC
Q 030634           13 LSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFL   92 (174)
Q Consensus        13 ~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~~   92 (174)
                      .+.+|...|++..+..|.++..++.++.+++.+|++          ++|...+++++..+|++++++.|+..+...+|  
T Consensus       182 ~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~----------~eAe~~L~~al~~~~~~~d~LaNliv~~~~~g--  249 (290)
T PF04733_consen  182 KYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHY----------EEAEELLEEALEKDPNDPDTLANLIVCSLHLG--  249 (290)
T ss_dssp             CCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-H----------HHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT--
T ss_pred             hHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCH----------HHHHHHHHHHHHhccCCHHHHHHHHHHHHHhC--
Confidence            467777788887777777888888888888888887          88888888888888888888888888888877  


Q ss_pred             ccchhhhhcCH-HHHHHHHHHHHHhCCCCHHHH
Q 030634           93 TADLSEAKGDF-DKASECFQRAVDEEPTNELYQ  124 (174)
Q Consensus        93 ~~~~~~a~~~~-~~Ai~~~~kAl~l~P~~~~y~  124 (174)
                               +. +.+.+++.+.-..+|++++..
T Consensus       250 ---------k~~~~~~~~l~qL~~~~p~h~~~~  273 (290)
T PF04733_consen  250 ---------KPTEAAERYLSQLKQSNPNHPLVK  273 (290)
T ss_dssp             ----------TCHHHHHHHHHCHHHTTTSHHHH
T ss_pred             ---------CChhHHHHHHHHHHHhCCCChHHH
Confidence                     55 556677777777888887443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.22  E-value=3.2e-06  Score=47.48  Aligned_cols=34  Identities=38%  Similarity=0.620  Sum_probs=31.3

Q ss_pred             HHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCC
Q 030634           32 ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAK   75 (174)
Q Consensus        32 ~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~   75 (174)
                      +++|+.+|.++..+|++          ++|+.+|+++++++|+|
T Consensus         1 a~~~~~lg~~~~~~~~~----------~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    1 AEAWYYLGQAYYQLGNY----------EEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-H----------HHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHHhCCH----------HHHHHHHHHHHHHCcCC
Confidence            57899999999999999          99999999999999986

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.20  E-value=3.3e-06  Score=77.58  Aligned_cols=127  Identities=21%  Similarity=0.229  Sum_probs=97.7

Q ss_pred             HHhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH---------hcCcccch---------hhhhhHHHHHHHHHHHH
Q 030634            8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLE---------LSQFESVS---------DSKKIINEAISKFEEAL   69 (174)
Q Consensus         8 ~~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~---------~g~~~~~~---------~~~~~~~eAi~~lekAl   69 (174)
                      |.++|.-.+|.....+.++ .|+++..|..+|.+...         .+++.++.         -..+.++++..+|+..+
T Consensus       434 Y~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl  512 (777)
T KOG1128|consen  434 YLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSL  512 (777)
T ss_pred             HHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHh
Confidence            4555555566666666666 78899999999886522         22221111         12467899999999999


Q ss_pred             HhCCCCHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHh
Q 030634           70 VIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLE  128 (174)
Q Consensus        70 ~ldP~~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~---------------------~y~~Al~  128 (174)
                      +++|-....||++|.+..+++           ++..|.++|.+++.++|++.                     ...+|+.
T Consensus       513 ~~nplq~~~wf~~G~~ALqle-----------k~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlK  581 (777)
T KOG1128|consen  513 EINPLQLGTWFGLGCAALQLE-----------KEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALK  581 (777)
T ss_pred             hcCccchhHHHhccHHHHHHh-----------hhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhh
Confidence            999999999999999999988           99999999999999999998                     5567888


Q ss_pred             cCCCChHHHHHHHHHHHh
Q 030634          129 VSTKAPELHMELHKHGIN  146 (174)
Q Consensus       129 l~~~~~~~~~~l~~~~~~  146 (174)
                      -+.+.+..+.|...+...
T Consensus       582 cn~~~w~iWENymlvsvd  599 (777)
T KOG1128|consen  582 CNYQHWQIWENYMLVSVD  599 (777)
T ss_pred             cCCCCCeeeechhhhhhh
Confidence            887777777776655544

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=98.17  E-value=6.7e-05  Score=63.89  Aligned_cols=104  Identities=16%  Similarity=0.188  Sum_probs=73.3

Q ss_pred             hHHhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccch-----------------------------hhhhh
Q 030634            7 DFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVS-----------------------------DSKKI   57 (174)
Q Consensus         7 ~~~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~-----------------------------~~~~~   57 (174)
                      ||-+-|.++.|...|...++..---..++-.|-.+|....+++.+.                             ...+.
T Consensus       116 Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~  195 (389)
T COG2956         116 DYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSD  195 (389)
T ss_pred             HHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhh
Confidence            5555555555555555555444444455555555554443332211                             11234


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634           58 INEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (174)
Q Consensus        58 ~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~  121 (174)
                      .+.|+..+++|++-||++..+=..+|.+....|           +|++|++.++++++.||+..
T Consensus       196 ~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g-----------~y~~AV~~~e~v~eQn~~yl  248 (389)
T COG2956         196 VDRARELLKKALQADKKCVRASIILGRVELAKG-----------DYQKAVEALERVLEQNPEYL  248 (389)
T ss_pred             HHHHHHHHHHHHhhCccceehhhhhhHHHHhcc-----------chHHHHHHHHHHHHhChHHH
Confidence            588999999999999999999999999999988           99999999999999999765

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=98.12  E-value=3.1e-06  Score=48.65  Aligned_cols=28  Identities=11%  Similarity=0.232  Sum_probs=27.1

Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHhcCc
Q 030634           21 AEANYAKDPLDADNLTRWGEALLELSQF   48 (174)
Q Consensus        21 ~~~al~~~P~~~~a~~~lg~~l~~~g~~   48 (174)
                      |+++++++|+++.+|+++|.+|...|++
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~~~g~~   29 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYLNQGDY   29 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHHHCcCH
Confidence            7899999999999999999999999998

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.11  E-value=0.0001  Score=55.71  Aligned_cols=102  Identities=16%  Similarity=0.066  Sum_probs=82.4

Q ss_pred             hhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHH
Q 030634           12 LLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKH----YTLWSLGNAHT   87 (174)
Q Consensus        12 ~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~----~a~~~LG~a~~   87 (174)
                      |..+.|++.|.+++.+-|..+.+|++.+.++...|+.          ++|+.-+++|+++.-+..    .++...|.+|.
T Consensus        57 g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~----------e~ALdDLn~AleLag~~trtacqa~vQRg~lyR  126 (175)
T KOG4555|consen   57 GDLDGALELFGQALCLAPERASAYNNRAQALRLQGDD----------EEALDDLNKALELAGDQTRTACQAFVQRGLLYR  126 (175)
T ss_pred             cchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCCh----------HHHHHHHHHHHHhcCccchHHHHHHHHHHHHHH
Confidence            5788999999999999999999999999999999888          999999999999955443    35788999999


Q ss_pred             hCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCHHHHHHHhcCCCChH
Q 030634           88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLEVSTKAPE  135 (174)
Q Consensus        88 ~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~~y~~Al~l~~~~~~  135 (174)
                      .+|           +.++|..-|..|-++-...+. ++...+||=+..
T Consensus       127 l~g-----------~dd~AR~DFe~AA~LGS~FAr-~QLV~lNPYAAl  162 (175)
T KOG4555|consen  127 LLG-----------NDDAARADFEAAAQLGSKFAR-EQLVELNPYAAL  162 (175)
T ss_pred             HhC-----------chHHHHHhHHHHHHhCCHHHH-HHHHhcChHHHH
Confidence            988           999999999998888664332 234466654443

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.09  E-value=3.3e-05  Score=73.46  Aligned_cols=114  Identities=11%  Similarity=0.063  Sum_probs=86.5

Q ss_pred             hHHhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccch----------hhhhhHHHHHHHHHHHHHhCCCCH
Q 030634            7 DFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVS----------DSKKIINEAISKFEEALVIDPAKH   76 (174)
Q Consensus         7 ~~~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~----------~~~~~~~eAi~~lekAl~ldP~~~   76 (174)
                      -|+++|..++|...++++++.+|+++.+++++|..|... +.+.+.          -+.+++.++...+++.+..+|++.
T Consensus       125 ~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~kq~~~~~e~W~k~~~~~~~d~  203 (906)
T PRK14720        125 AYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKKKQYVGIEEIWSKLVHYNSDDF  203 (906)
T ss_pred             HHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHhcCcccc
Confidence            489999999999999999999999999999999999887 653221          123456777777888888899988


Q ss_pred             HHHHHHHHH-HHhCC--CC----cc--chhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634           77 YTLWSLGNA-HTSCG--FL----TA--DLSEAKGDFDKASECFQRAVDEEPTNE  121 (174)
Q Consensus        77 ~a~~~LG~a-~~~lG--~~----~~--~~~~a~~~~~~Ai~~~~kAl~l~P~~~  121 (174)
                      +.++.+=.. ....|  +.    .|  ..+...++|++++..++++|+++|+|.
T Consensus       204 d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~  257 (906)
T PRK14720        204 DFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNN  257 (906)
T ss_pred             hHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcch
Confidence            875543332 22222  11    11  444556799999999999999999988

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=98.06  E-value=1.5e-05  Score=47.98  Aligned_cols=41  Identities=22%  Similarity=0.267  Sum_probs=35.9

Q ss_pred             HHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 030634           76 HYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSL  127 (174)
Q Consensus        76 ~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~~y~~Al  127 (174)
                      |.+|+.+|.+|..+|           ++++|+++|+++++.+|++...+..+
T Consensus         1 p~~~~~la~~~~~~G-----------~~~~A~~~~~~~l~~~P~~~~a~~~L   41 (44)
T PF13428_consen    1 PAAWLALARAYRRLG-----------QPDEAERLLRRALALDPDDPEAWRAL   41 (44)
T ss_pred             CHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHHCcCCHHHHHHh
Confidence            468999999999999           99999999999999999988655544

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=98.03  E-value=1.1e-05  Score=45.45  Aligned_cols=33  Identities=30%  Similarity=0.621  Sum_probs=30.5

Q ss_pred             HHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCC
Q 030634           77 YTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN  120 (174)
Q Consensus        77 ~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~  120 (174)
                      .+|+.+|.+|..+|           ++++|+.+|+++++++|+|
T Consensus         2 ~~~~~lg~~y~~~~-----------~~~~A~~~~~~a~~~~~~n   34 (34)
T PF13181_consen    2 EAYYNLGKIYEQLG-----------DYEEALEYFEKALELNPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHTT-----------SHHHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHHcC-----------CHHHHHHHHHHHHhhCCCC
Confidence            57999999999999           9999999999999999964

...

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.01  E-value=5.5e-05  Score=59.98  Aligned_cols=70  Identities=23%  Similarity=0.306  Sum_probs=60.1

Q ss_pred             CHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHhCCCCccchhhhhcCHHHHH
Q 030634           31 DADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKH---YTLWSLGNAHTSCGFLTADLSEAKGDFDKAS  107 (174)
Q Consensus        31 ~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~---~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai  107 (174)
                      +++.++..|..++..|++          .+|+..|++++...|..+   .+.+.+|.++...|           +|++|+
T Consensus         4 ~~~~lY~~a~~~~~~g~y----------~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~-----------~y~~A~   62 (203)
T PF13525_consen    4 TAEALYQKALEALQQGDY----------EEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQG-----------DYEEAI   62 (203)
T ss_dssp             -HHHHHHHHHHHHHCT-H----------HHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT------------HHHHH
T ss_pred             CHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcC-----------CHHHHH
Confidence            578899999999999999          999999999999988754   68999999999999           999999


Q ss_pred             HHHHHHHHhCCCCH
Q 030634          108 ECFQRAVDEEPTNE  121 (174)
Q Consensus       108 ~~~~kAl~l~P~~~  121 (174)
                      ..|++-++..|+++
T Consensus        63 ~~~~~fi~~yP~~~   76 (203)
T PF13525_consen   63 AAYERFIKLYPNSP   76 (203)
T ss_dssp             HHHHHHHHH-TT-T
T ss_pred             HHHHHHHHHCCCCc
Confidence            99999999999987

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.00  E-value=8.9e-05  Score=56.18  Aligned_cols=70  Identities=21%  Similarity=0.298  Sum_probs=64.5

Q ss_pred             CHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHhCCCCccchhhhhcCHHHHH
Q 030634           31 DADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKH---YTLWSLGNAHTSCGFLTADLSEAKGDFDKAS  107 (174)
Q Consensus        31 ~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~---~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai  107 (174)
                      .+..++.-|...+..|++          ++|++.|+......|-.+   .+.+.||.+|+..|           +|++|+
T Consensus         9 ~~~~ly~~a~~~l~~~~Y----------~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~-----------~y~~A~   67 (142)
T PF13512_consen    9 SPQELYQEAQEALQKGNY----------EEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQG-----------DYEEAI   67 (142)
T ss_pred             CHHHHHHHHHHHHHhCCH----------HHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHcc-----------CHHHHH
Confidence            578899999999999999          999999999999988755   67899999999988           999999


Q ss_pred             HHHHHHHHhCCCCH
Q 030634          108 ECFQRAVDEEPTNE  121 (174)
Q Consensus       108 ~~~~kAl~l~P~~~  121 (174)
                      ..+++=++++|+++
T Consensus        68 a~~~rFirLhP~hp   81 (142)
T PF13512_consen   68 AAYDRFIRLHPTHP   81 (142)
T ss_pred             HHHHHHHHhCCCCC
Confidence            99999999999876

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.99  E-value=7.6e-05  Score=62.73  Aligned_cols=109  Identities=16%  Similarity=0.127  Sum_probs=80.0

Q ss_pred             HHhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcC--cccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 030634            8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQ--FESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNA   85 (174)
Q Consensus         8 ~~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~--~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a   85 (174)
                      |=++++++.|.+.++..-+.+.++.-....-+.+.+..|.  +          .+|...|++..+..|.++..+..++.+
T Consensus       141 ~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~----------~~A~y~f~El~~~~~~t~~~lng~A~~  210 (290)
T PF04733_consen  141 LLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKY----------QDAFYIFEELSDKFGSTPKLLNGLAVC  210 (290)
T ss_dssp             HHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCC----------CHHHHHHHHHHCCS--SHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhH----------HHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence            3467899999999999888877766555555555555554  5          899999999888888999999999999


Q ss_pred             HHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCHHHHHHHhcCCCChHHHHHHHHHHHhcccc
Q 030634           86 HTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLEVSTKAPELHMELHKHGINQQTL  150 (174)
Q Consensus        86 ~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~~y~~Al~l~~~~~~~~~~l~~~~~~~~~~  150 (174)
                      +..+|           +|++|...+++|++.+|+             +|++..|++++..-+|..
T Consensus       211 ~l~~~-----------~~~eAe~~L~~al~~~~~-------------~~d~LaNliv~~~~~gk~  251 (290)
T PF04733_consen  211 HLQLG-----------HYEEAEELLEEALEKDPN-------------DPDTLANLIVCSLHLGKP  251 (290)
T ss_dssp             HHHCT------------HHHHHHHHHHHCCC-CC-------------HHHHHHHHHHHHHHTT-T
T ss_pred             HHHhC-----------CHHHHHHHHHHHHHhccC-------------CHHHHHHHHHHHHHhCCC
Confidence            99999           999999988886665554             566777777766665544

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.95  E-value=9.8e-05  Score=60.98  Aligned_cols=93  Identities=15%  Similarity=0.205  Sum_probs=80.6

Q ss_pred             HHhhhhHHHHHHHHHHHHhh--------CCCCHHH----------HHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHH
Q 030634            8 FDRLLLSEHNRKTAEANYAK--------DPLDADN----------LTRWGEALLELSQFESVSDSKKIINEAISKFEEAL   69 (174)
Q Consensus         8 ~~~~~~~~eAl~~~~~al~~--------~P~~~~a----------~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl   69 (174)
                      +=++++|+||...|+.|+-.        .|.++++          +.|.+.|++..|++          -+++++-..+|
T Consensus       188 lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~----------yevleh~seiL  257 (329)
T KOG0545|consen  188 LFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEY----------YEVLEHCSEIL  257 (329)
T ss_pred             hhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHH----------HHHHHHHHHHH
Confidence            34678899999999888763        6777774          47778888888888          99999999999


Q ss_pred             HhCCCCHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634           70 VIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (174)
Q Consensus        70 ~ldP~~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~  121 (174)
                      ..+|.+..|+|..|.++...=           +..+|..-|+++|+++|.-.
T Consensus       258 ~~~~~nvKA~frRakAhaa~W-----------n~~eA~~D~~~vL~ldpsla  298 (329)
T KOG0545|consen  258 RHHPGNVKAYFRRAKAHAAVW-----------NEAEAKADLQKVLELDPSLA  298 (329)
T ss_pred             hcCCchHHHHHHHHHHHHhhc-----------CHHHHHHHHHHHHhcChhhH
Confidence            999999999999999998866           89999999999999999765

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.94  E-value=0.00021  Score=56.96  Aligned_cols=84  Identities=25%  Similarity=0.368  Sum_probs=43.1

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHhCCCC
Q 030634           14 SEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEAL-VIDPAKHYTLWSLGNAHTSCGFL   92 (174)
Q Consensus        14 ~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl-~ldP~~~~a~~~LG~a~~~lG~~   92 (174)
                      -+..++.+.+.+++.|.. .-.+.||+++.++|++          .||..+|++++ -+..+++..+..+++++...+  
T Consensus        72 P~R~~Rea~~~~~~ApTv-qnr~rLa~al~elGr~----------~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~--  138 (251)
T COG4700          72 PERHLREATEELAIAPTV-QNRYRLANALAELGRY----------HEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQ--  138 (251)
T ss_pred             hhHHHHHHHHHHhhchhH-HHHHHHHHHHHHhhhh----------hhhHHHHHHHhccccCCCHHHHHHHHHHHHhhc--
Confidence            334444444444444543 2345555555555555          55555555555 344555555555555555555  


Q ss_pred             ccchhhhhcCHHHHHHHHHHHHHhCCC
Q 030634           93 TADLSEAKGDFDKASECFQRAVDEEPT  119 (174)
Q Consensus        93 ~~~~~~a~~~~~~Ai~~~~kAl~l~P~  119 (174)
                               ++..|...+++..+-+|.
T Consensus       139 ---------~~A~a~~tLe~l~e~~pa  156 (251)
T COG4700         139 ---------EFAAAQQTLEDLMEYNPA  156 (251)
T ss_pred             ---------cHHHHHHHHHHHhhcCCc
Confidence                     555555555555555443

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=97.91  E-value=0.00025  Score=60.46  Aligned_cols=89  Identities=15%  Similarity=0.143  Sum_probs=82.8

Q ss_pred             hhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHhCC
Q 030634           12 LLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKH-YTLWSLGNAHTSCG   90 (174)
Q Consensus        12 ~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~-~a~~~LG~a~~~lG   90 (174)
                      ..++.|+....+|+..||+...+-..+|.+....|++          +.|++.++.+++.||+.. ++.-.|-.||..+|
T Consensus       194 ~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y----------~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg  263 (389)
T COG2956         194 SDVDRARELLKKALQADKKCVRASIILGRVELAKGDY----------QKAVEALERVLEQNPEYLSEVLEMLYECYAQLG  263 (389)
T ss_pred             hhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccch----------HHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhC
Confidence            4677899999999999999999999999999999999          999999999999999976 57778999999999


Q ss_pred             CCccchhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634           91 FLTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (174)
Q Consensus        91 ~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~  121 (174)
                                 +.++.+..+.++.+.+|+..
T Consensus       264 -----------~~~~~~~fL~~~~~~~~g~~  283 (389)
T COG2956         264 -----------KPAEGLNFLRRAMETNTGAD  283 (389)
T ss_pred             -----------CHHHHHHHHHHHHHccCCcc
Confidence                       99999999999999998877

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=97.90  E-value=0.001  Score=48.46  Aligned_cols=121  Identities=24%  Similarity=0.290  Sum_probs=87.4

Q ss_pred             hHHhhhhHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 030634            7 DFDRLLLSEHNRKTAEANYA--KDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGN   84 (174)
Q Consensus         7 ~~~~~~~~~eAl~~~~~al~--~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~   84 (174)
                      .+...+.+.++...+.....  ..+.....+..+|......+.+          .+++..+.+++..++.+.......+.
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (291)
T COG0457          68 ALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKY----------EEALELLEKALALDPDPDLAEALLAL  137 (291)
T ss_pred             HHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhH----------HHHHHHHHHHHcCCCCcchHHHHHHH
Confidence            34455667777777777776  6788888888888888887777          88888888888887777666666666


Q ss_pred             -HHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCC--CH----------------------HHHHHHhcCCC-ChHHHH
Q 030634           85 -AHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPT--NE----------------------LYQKSLEVSTK-APELHM  138 (174)
Q Consensus        85 -a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~--~~----------------------~y~~Al~l~~~-~~~~~~  138 (174)
                       ++...|           ++++|+.+|.+++..+|.  ..                      .+.+++...+. ....+.
T Consensus       138 ~~~~~~~-----------~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  206 (291)
T COG0457         138 GALYELG-----------DYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALL  206 (291)
T ss_pred             HHHHHcC-----------CHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHH
Confidence             777777           888888888888777763  11                      45556666666 566677


Q ss_pred             HHHHHHHhcc
Q 030634          139 ELHKHGINQQ  148 (174)
Q Consensus       139 ~l~~~~~~~~  148 (174)
                      +++..+...+
T Consensus       207 ~~~~~~~~~~  216 (291)
T COG0457         207 NLGLLYLKLG  216 (291)
T ss_pred             HhhHHHHHcc
Confidence            7777776665

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=97.88  E-value=0.00012  Score=66.22  Aligned_cols=90  Identities=17%  Similarity=0.138  Sum_probs=82.9

Q ss_pred             hHHhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 030634            7 DFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAH   86 (174)
Q Consensus         7 ~~~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~   86 (174)
                      -|+++|.+++|+...+++++..|..++.+...|.++-..|++          ++|...++.|..+|+.|--+-...+..+
T Consensus       203 hyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~----------~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~  272 (517)
T PF12569_consen  203 HYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDL----------KEAAEAMDEARELDLADRYINSKCAKYL  272 (517)
T ss_pred             HHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHhCChhhHHHHHHHHHHH
Confidence            489999999999999999999999999999999999999999          9999999999999999998888888888


Q ss_pred             HhCCCCccchhhhhcCHHHHHHHHHHHHHhC
Q 030634           87 TSCGFLTADLSEAKGDFDKASECFQRAVDEE  117 (174)
Q Consensus        87 ~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~  117 (174)
                      .+.|           +.++|.+.+..=.+-+
T Consensus       273 LRa~-----------~~e~A~~~~~~Ftr~~  292 (517)
T PF12569_consen  273 LRAG-----------RIEEAEKTASLFTRED  292 (517)
T ss_pred             HHCC-----------CHHHHHHHHHhhcCCC
Confidence            8988           9999998877765544

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.86  E-value=0.0002  Score=59.33  Aligned_cols=86  Identities=23%  Similarity=0.304  Sum_probs=75.7

Q ss_pred             HHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHhCCCCccchhhhhcCHHHHHHH
Q 030634           33 DNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKH---YTLWSLGNAHTSCGFLTADLSEAKGDFDKASEC  109 (174)
Q Consensus        33 ~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~---~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~  109 (174)
                      +-.|+.|.-++..|+|          .+|...|.+-++..|++.   .|+|-||.+++.+|           +|+.|...
T Consensus       142 ~~~Y~~A~~~~ksgdy----------~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg-----------~y~~Aa~~  200 (262)
T COG1729         142 TKLYNAALDLYKSGDY----------AEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQG-----------DYEDAAYI  200 (262)
T ss_pred             hHHHHHHHHHHHcCCH----------HHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcc-----------cchHHHHH
Confidence            3489999999999999          999999999999999965   78999999999999           99999999


Q ss_pred             HHHHHHhCCCCHHHHHHHhcCCCChHHHHHHHHHHHhccc
Q 030634          110 FQRAVDEEPTNELYQKSLEVSTKAPELHMELHKHGINQQT  149 (174)
Q Consensus       110 ~~kAl~l~P~~~~y~~Al~l~~~~~~~~~~l~~~~~~~~~  149 (174)
                      |.++++-.|+          .|++|+....||.+....|-
T Consensus       201 f~~~~k~~P~----------s~KApdallKlg~~~~~l~~  230 (262)
T COG1729         201 FARVVKDYPK----------SPKAPDALLKLGVSLGRLGN  230 (262)
T ss_pred             HHHHHHhCCC----------CCCChHHHHHHHHHHHHhcC
Confidence            9999999986          57788888888887776654

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.84  E-value=4.9e-06  Score=70.98  Aligned_cols=91  Identities=16%  Similarity=0.099  Sum_probs=85.0

Q ss_pred             hhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhC
Q 030634           10 RLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSC   89 (174)
Q Consensus        10 ~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~l   89 (174)
                      ..|.|..|+..+-.++.++|..+..+.+.|.+++.+++.          ..||.-+..|+++||+...-|-..|.+...+
T Consensus       126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp----------~~airD~d~A~ein~Dsa~~ykfrg~A~rll  195 (377)
T KOG1308|consen  126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKP----------NAAIRDCDFAIEINPDSAKGYKFRGYAERLL  195 (377)
T ss_pred             cCcchhhhhcccccccccCCchhhhcccccceeeeccCC----------chhhhhhhhhhccCcccccccchhhHHHHHh
Confidence            346799999999999999999999999999999999999          9999999999999999999999999999999


Q ss_pred             CCCccchhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634           90 GFLTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (174)
Q Consensus        90 G~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~  121 (174)
                      |           ++++|...++.+.+++=+-.
T Consensus       196 g-----------~~e~aa~dl~~a~kld~dE~  216 (377)
T KOG1308|consen  196 G-----------NWEEAAHDLALACKLDYDEA  216 (377)
T ss_pred             h-----------chHHHHHHHHHHHhccccHH
Confidence            9           99999999999999876544

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=97.83  E-value=2.5e-05  Score=51.96  Aligned_cols=56  Identities=23%  Similarity=0.266  Sum_probs=46.9

Q ss_pred             hHHhhhhHHHHHHHHHHHHhh---C----CCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhC
Q 030634            7 DFDRLLLSEHNRKTAEANYAK---D----PLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVID   72 (174)
Q Consensus         7 ~~~~~~~~~eAl~~~~~al~~---~----P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ld   72 (174)
                      -|.++++|++|+..+++++++   .    |.-+.++.++|.++..+|++          ++|+..+++++++.
T Consensus        14 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~----------~~A~~~~~~al~i~   76 (78)
T PF13424_consen   14 VYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDY----------EEALEYYQKALDIF   76 (78)
T ss_dssp             HHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHH----------HHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHhhh
Confidence            367899999999999999975   2    22366899999999999999          99999999999863

...

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=97.83  E-value=0.00038  Score=50.76  Aligned_cols=91  Identities=26%  Similarity=0.371  Sum_probs=70.5

Q ss_pred             HHhhhhHHHHHHHHHHHHhhCC---CCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHH
Q 030634            8 FDRLLLSEHNRKTAEANYAKDP---LDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPA-KHYTLWSLG   83 (174)
Q Consensus         8 ~~~~~~~~eAl~~~~~al~~~P---~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~-~~~a~~~LG   83 (174)
                      +..++.+++|...+.+++..+|   .........+..+...+++          ++|+..+.++++..|. ....+..++
T Consensus       140 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~a~~~~~~~~~~~~~~~~~~~~~~~  209 (291)
T COG0457         140 LYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRY----------EEALELLEKALKLNPDDDAEALLNLG  209 (291)
T ss_pred             HHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCH----------HHHHHHHHHHHhhCcccchHHHHHhh
Confidence            5567778888888888877776   3555666666666666666          8888888888888888 688888888


Q ss_pred             HHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCC
Q 030634           84 NAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPT  119 (174)
Q Consensus        84 ~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~  119 (174)
                      ..+...|           ++++|+..+.+++...|+
T Consensus       210 ~~~~~~~-----------~~~~a~~~~~~~~~~~~~  234 (291)
T COG0457         210 LLYLKLG-----------KYEEALEYYEKALELDPD  234 (291)
T ss_pred             HHHHHcc-----------cHHHHHHHHHHHHhhCcc
Confidence            8888877           888888888888888887

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=97.82  E-value=0.00029  Score=64.80  Aligned_cols=111  Identities=21%  Similarity=0.176  Sum_probs=78.1

Q ss_pred             hhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccch-----------------------hhhhhHHHHHHHHHH
Q 030634           11 LLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVS-----------------------DSKKIINEAISKFEE   67 (174)
Q Consensus        11 ~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~-----------------------~~~~~~~eAi~~lek   67 (174)
                      -|...+|+..+..+++.+|++.++|+..-.+.....+++.+.                       -..+..++|+..+++
T Consensus       597 agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe  676 (913)
T KOG0495|consen  597 AGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEE  676 (913)
T ss_pred             cCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHH
Confidence            367778888888888888988888876655555444443211                       113456999999999


Q ss_pred             HHHhCCCCHHHHHHHHHHHHhCCC-------------C----------ccchhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634           68 ALVIDPAKHYTLWSLGNAHTSCGF-------------L----------TADLSEAKGDFDKASECFQRAVDEEPTNE  121 (174)
Q Consensus        68 Al~ldP~~~~a~~~LG~a~~~lG~-------------~----------~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~  121 (174)
                      +|+..|+.+..|+.+|.++..++.             .          .....|..+..-+|...+.++.-.||++.
T Consensus       677 ~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~  753 (913)
T KOG0495|consen  677 ALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNA  753 (913)
T ss_pred             HHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcc
Confidence            999999999999999999988771             0          12333445555566666666666666665

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.82  E-value=0.00029  Score=61.02  Aligned_cols=120  Identities=15%  Similarity=0.125  Sum_probs=99.0

Q ss_pred             hhHHhhhhHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 030634            6 SDFDRLLLSEHNRKTAEANYAKDPLDA-DNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGN   84 (174)
Q Consensus         6 ~~~~~~~~~~eAl~~~~~al~~~P~~~-~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~   84 (174)
                      .||=+-..|+.|+..++-....+-... +.-.++|.|++.+|++          ++|+..|+-+...+--+.+.+.+|+.
T Consensus        30 edfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY----------~~Al~~Y~~~~~~~~~~~el~vnLAc   99 (557)
T KOG3785|consen   30 EDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDY----------EEALNVYTFLMNKDDAPAELGVNLAC   99 (557)
T ss_pred             HHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccH----------HHHHHHHHHHhccCCCCcccchhHHH
Confidence            456666788999999998887765543 6778899999999999          99999999999988888899999999


Q ss_pred             HHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH-----HHHHHHhcCCCC--hHHHHHHHHHHHhcccc
Q 030634           85 AHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE-----LYQKSLEVSTKA--PELHMELHKHGINQQTL  150 (174)
Q Consensus        85 a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~-----~y~~Al~l~~~~--~~~~~~l~~~~~~~~~~  150 (174)
                      ++..+|           .|.+|.....+    -|+++     .+..+.+++.+.  ..+|.+|+.+...|-++
T Consensus       100 c~FyLg-----------~Y~eA~~~~~k----a~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSL  157 (557)
T KOG3785|consen  100 CKFYLG-----------QYIEAKSIAEK----APKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSL  157 (557)
T ss_pred             HHHHHH-----------HHHHHHHHHhh----CCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhH
Confidence            999999           99999887766    68877     556677777554  44888998888777666

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=97.77  E-value=0.0003  Score=66.15  Aligned_cols=89  Identities=20%  Similarity=0.175  Sum_probs=84.0

Q ss_pred             hhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCC
Q 030634           12 LLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGF   91 (174)
Q Consensus        12 ~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~   91 (174)
                      +.|..|++...+.++..|+.+-+....|.++.++|+.          ++|..+++..-..-|+|...+-.+-.+|..+| 
T Consensus        23 ~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~----------~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~-   91 (932)
T KOG2053|consen   23 SQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKG----------DEALKLLEALYGLKGTDDLTLQFLQNVYRDLG-   91 (932)
T ss_pred             HHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCc----------hhHHHHHhhhccCCCCchHHHHHHHHHHHHHh-
Confidence            5899999999999999999999999999999999999          99999999888888899999999999999998 


Q ss_pred             CccchhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634           92 LTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (174)
Q Consensus        92 ~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~  121 (174)
                                .+++|..+|++++..+|+..
T Consensus        92 ----------~~d~~~~~Ye~~~~~~P~ee  111 (932)
T KOG2053|consen   92 ----------KLDEAVHLYERANQKYPSEE  111 (932)
T ss_pred             ----------hhhHHHHHHHHHHhhCCcHH
Confidence                      99999999999999999944

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=97.72  E-value=0.00013  Score=66.26  Aligned_cols=131  Identities=20%  Similarity=0.153  Sum_probs=101.1

Q ss_pred             hhhhHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 030634           10 RLLLSEHNRKTAEANYAKDPLDA-DNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTS   88 (174)
Q Consensus        10 ~~~~~~eAl~~~~~al~~~P~~~-~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~   88 (174)
                      -+|.-..|.++++.|+...|... ....+|+.+++..|-.          .+|-..+.++|.++-..|-.++.+|+++..
T Consensus       619 ~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~----------~da~~~l~q~l~~~~sepl~~~~~g~~~l~  688 (886)
T KOG4507|consen  619 AVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLH----------LDATKLLLQALAINSSEPLTFLSLGNAYLA  688 (886)
T ss_pred             ecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhh----------ccHHHHHHHHHhhcccCchHHHhcchhHHH
Confidence            46778899999999999999854 4688999999998877          899999999999999999999999999999


Q ss_pred             CCCCccchhhhhcCHHHHHHHHHHHHHhCCCCHHHHHHHhcCCCChHHHHHHHHHH--HhccccCCCCchhhHHHH
Q 030634           89 CGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLEVSTKAPELHMELHKHG--INQQTLGGGSSASSAQVN  162 (174)
Q Consensus        89 lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~~y~~Al~l~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~  162 (174)
                      +.           +.++|+++|+.|++++|++..++..|.+..= -.++..+.++.  .+.|+.+.+|.-+++--|
T Consensus       689 l~-----------~i~~a~~~~~~a~~~~~~~~~~~~~l~~i~c-~~~~~~~~~~~~svc~~~ive~sn~~d~~~n  752 (886)
T KOG4507|consen  689 LK-----------NISGALEAFRQALKLTTKCPECENSLKLIRC-MQFYPFLYNITSSVCSGTVVEESNGSDEMEN  752 (886)
T ss_pred             Hh-----------hhHHHHHHHHHHHhcCCCChhhHHHHHHHHH-hhhhhHHHhccccceeeeeeecCCCcchhhc
Confidence            88           9999999999999999999977766543111 23444444432  344555544444444433

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.70  E-value=0.00017  Score=62.49  Aligned_cols=103  Identities=15%  Similarity=0.055  Sum_probs=87.4

Q ss_pred             HHhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchh----------------------------------
Q 030634            8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSD----------------------------------   53 (174)
Q Consensus         8 ~~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~----------------------------------   53 (174)
                      |=++|.|++|+..|..+...+-.+.+.+.+++.+++.+|.+.++..                                  
T Consensus        67 ~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~  146 (557)
T KOG3785|consen   67 YFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSS  146 (557)
T ss_pred             HHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence            4578999999999999999988899999999999999998853110                                  


Q ss_pred             ----------------hhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhC
Q 030634           54 ----------------SKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEE  117 (174)
Q Consensus        54 ----------------~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~  117 (174)
                                      ...-+++||..|.+++.-+|+....-.+++.||+++.           .|+-+-+.++--|+.-
T Consensus       147 LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlD-----------Yydvsqevl~vYL~q~  215 (557)
T KOG3785|consen  147 LQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLD-----------YYDVSQEVLKVYLRQF  215 (557)
T ss_pred             HhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcc-----------hhhhHHHHHHHHHHhC
Confidence                            0112799999999999999998888889999999987           8888888888888888


Q ss_pred             CCCH
Q 030634          118 PTNE  121 (174)
Q Consensus       118 P~~~  121 (174)
                      |+++
T Consensus       216 pdSt  219 (557)
T KOG3785|consen  216 PDST  219 (557)
T ss_pred             CCcH
Confidence            8887

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.69  E-value=6.7e-05  Score=42.11  Aligned_cols=34  Identities=29%  Similarity=0.550  Sum_probs=30.4

Q ss_pred             HHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCC
Q 030634           32 ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAK   75 (174)
Q Consensus        32 ~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~   75 (174)
                      +++|+.+|.++..+|++          ++|+..|+++++++|++
T Consensus         1 a~~~~~lg~~y~~~~~~----------~~A~~~~~~a~~~~~~n   34 (34)
T PF13181_consen    1 AEAYYNLGKIYEQLGDY----------EEALEYFEKALELNPDN   34 (34)
T ss_dssp             -HHHHHHHHHHHHTTSH----------HHHHHHHHHHHHHHTT-
T ss_pred             CHHHHHHHHHHHHcCCH----------HHHHHHHHHHHhhCCCC
Confidence            36899999999999999          99999999999999964

...

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=97.69  E-value=7.9e-05  Score=64.19  Aligned_cols=87  Identities=18%  Similarity=0.200  Sum_probs=71.9

Q ss_pred             HHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHH
Q 030634           36 TRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVD  115 (174)
Q Consensus        36 ~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~  115 (174)
                      --.|+-|+.+|+|          ++||.||.+++.++|.++-.+.|.+.+|.++.           .|..|..-+..|+.
T Consensus       101 KE~GN~yFKQgKy----------~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K-----------~FA~AE~DC~~Aia  159 (536)
T KOG4648|consen  101 KERGNTYFKQGKY----------EEAIDCYSTAIAVYPHNPVYHINRALAYLKQK-----------SFAQAEEDCEAAIA  159 (536)
T ss_pred             HHhhhhhhhccch----------hHHHHHhhhhhccCCCCccchhhHHHHHHHHH-----------HHHHHHHhHHHHHH
Confidence            4467888888888          99999999999999999999999999999987           88888888888888


Q ss_pred             hCCCCH---------------------HHHHHHhcCCCChHHHHHHHHH
Q 030634          116 EEPTNE---------------------LYQKSLEVSTKAPELHMELHKH  143 (174)
Q Consensus       116 l~P~~~---------------------~y~~Al~l~~~~~~~~~~l~~~  143 (174)
                      +|-.+.                     -|+.+|++-|+..++.-.++.+
T Consensus       160 Ld~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i  208 (536)
T KOG4648|consen  160 LDKLYVKAYSRRMQARESLGNNMEAKKDCETVLALEPKNIELKKSLARI  208 (536)
T ss_pred             hhHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHh
Confidence            876554                     5677888888877765555544

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.69  E-value=0.00091  Score=60.74  Aligned_cols=130  Identities=18%  Similarity=0.155  Sum_probs=97.4

Q ss_pred             hHHhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchh-----------------------hhhhHHHHHH
Q 030634            7 DFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSD-----------------------SKKIINEAIS   63 (174)
Q Consensus         7 ~~~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~-----------------------~~~~~~eAi~   63 (174)
                      -+...+.|++|++.+.+.+...|++++++.-.-.+++..++|+.++.                       ..++.++|+.
T Consensus        21 ~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~Dealk  100 (652)
T KOG2376|consen   21 RHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDEALK  100 (652)
T ss_pred             HhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHHHHH
Confidence            34566799999999999999999999999999999999888854221                       1345677777


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH------------HHHH--HHhc
Q 030634           64 KFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE------------LYQK--SLEV  129 (174)
Q Consensus        64 ~lekAl~ldP~~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~------------~y~~--Al~l  129 (174)
                      +++   -+|+.+..+....|.+++.+|           +|++|++.|+..++-+-++.            .-..  .++.
T Consensus       101 ~~~---~~~~~~~~ll~L~AQvlYrl~-----------~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~  166 (652)
T KOG2376|consen  101 TLK---GLDRLDDKLLELRAQVLYRLE-----------RYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQS  166 (652)
T ss_pred             HHh---cccccchHHHHHHHHHHHHHh-----------hHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHh
Confidence            777   567777778888888888888           99999999999988776655            0011  1344


Q ss_pred             CCCChH----HHHHHHHHHHhcccc
Q 030634          130 STKAPE----LHMELHKHGINQQTL  150 (174)
Q Consensus       130 ~~~~~~----~~~~l~~~~~~~~~~  150 (174)
                      +|..++    ..+|.+-++++.|-.
T Consensus       167 v~~v~e~syel~yN~Ac~~i~~gky  191 (652)
T KOG2376|consen  167 VPEVPEDSYELLYNTACILIENGKY  191 (652)
T ss_pred             ccCCCcchHHHHHHHHHHHHhcccH
Confidence            444443    677777777777765

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=97.68  E-value=0.00027  Score=53.41  Aligned_cols=87  Identities=17%  Similarity=0.103  Sum_probs=71.0

Q ss_pred             HHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHH
Q 030634           34 NLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRA  113 (174)
Q Consensus        34 a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kA  113 (174)
                      .+-..|+++.+.|+.          +.|++.|.++|.+-|+.+.+|.|.+.++..+|           +.++|++-+.+|
T Consensus        45 ~LEl~~valaE~g~L----------d~AlE~F~qal~l~P~raSayNNRAQa~RLq~-----------~~e~ALdDLn~A  103 (175)
T KOG4555|consen   45 ELELKAIALAEAGDL----------DGALELFGQALCLAPERASAYNNRAQALRLQG-----------DDEEALDDLNKA  103 (175)
T ss_pred             HHHHHHHHHHhccch----------HHHHHHHHHHHHhcccchHhhccHHHHHHHcC-----------ChHHHHHHHHHH
Confidence            345668888888888          99999999999999999999999999999999           999999999999


Q ss_pred             HHhCCCCHHHHHHHhcCCCChHHHHHHHHHHHhcccc
Q 030634          114 VDEEPTNELYQKSLEVSTKAPELHMELHKHGINQQTL  150 (174)
Q Consensus       114 l~l~P~~~~y~~Al~l~~~~~~~~~~l~~~~~~~~~~  150 (174)
                      +++.-+-..         .....|..-|.+|.-+|+.
T Consensus       104 leLag~~tr---------tacqa~vQRg~lyRl~g~d  131 (175)
T KOG4555|consen  104 LELAGDQTR---------TACQAFVQRGLLYRLLGND  131 (175)
T ss_pred             HHhcCccch---------HHHHHHHHHHHHHHHhCch
Confidence            998655331         1234566666677666665

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=97.61  E-value=0.0003  Score=57.28  Aligned_cols=69  Identities=30%  Similarity=0.338  Sum_probs=59.9

Q ss_pred             HHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHH
Q 030634           32 ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQ  111 (174)
Q Consensus        32 ~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~  111 (174)
                      +..++-.|+.|..+|-.          .-|.--|.+++.+.|+-++++..||.-+...|           +|+.|.+.|.
T Consensus        65 A~l~fERGvlYDSlGL~----------~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~-----------~fdaa~eaFd  123 (297)
T COG4785          65 AQLLFERGVLYDSLGLR----------ALARNDFSQALAIRPDMPEVFNYLGIYLTQAG-----------NFDAAYEAFD  123 (297)
T ss_pred             HHHHHHhcchhhhhhHH----------HHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcc-----------cchHHHHHhh
Confidence            44555666666555554          88999999999999999999999999999988           9999999999


Q ss_pred             HHHHhCCCCH
Q 030634          112 RAVDEEPTNE  121 (174)
Q Consensus       112 kAl~l~P~~~  121 (174)
                      -.+++||.+.
T Consensus       124 s~~ELDp~y~  133 (297)
T COG4785         124 SVLELDPTYN  133 (297)
T ss_pred             hHhccCCcch
Confidence            9999999987

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.56  E-value=0.00011  Score=64.70  Aligned_cols=124  Identities=15%  Similarity=0.127  Sum_probs=87.5

Q ss_pred             hHHhhhhHHHHHHHHHHHHhhC------CCCHHHHHHHHHHHHHhcCccc----------chhhhhhHHHHHHHHHHHHH
Q 030634            7 DFDRLLLSEHNRKTAEANYAKD------PLDADNLTRWGEALLELSQFES----------VSDSKKIINEAISKFEEALV   70 (174)
Q Consensus         7 ~~~~~~~~~eAl~~~~~al~~~------P~~~~a~~~lg~~l~~~g~~~~----------~~~~~~~~~eAi~~lekAl~   70 (174)
                      .++.+|.|++|+..+.+-+.+.      -....++|++|++|...|+.-.          ..+.+..++.|++.|+.-|+
T Consensus       104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~  183 (639)
T KOG1130|consen  104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLE  183 (639)
T ss_pred             hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHH
Confidence            4678899999999998887753      2356799999999998887521          12334567888888888887


Q ss_pred             hCCCCH------HHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCHHHHHHHhcCCCCh--HHHHHHHH
Q 030634           71 IDPAKH------YTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLEVSTKAP--ELHMELHK  142 (174)
Q Consensus        71 ldP~~~------~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~~y~~Al~l~~~~~--~~~~~l~~  142 (174)
                      +..+..      .++-+||+.|+.+|           +|++||.+-+.-|++....         -..+.  .+|.|||+
T Consensus       184 l~~~lgDr~aqGRa~GnLGNTyYlLG-----------df~~ai~~H~~RL~ia~ef---------GDrAaeRRA~sNlgN  243 (639)
T KOG1130|consen  184 LSEKLGDRLAQGRAYGNLGNTYYLLG-----------DFDQAIHFHKLRLEIAQEF---------GDRAAERRAHSNLGN  243 (639)
T ss_pred             HHHHhhhHHhhcchhcccCceeeeec-----------cHHHHHHHHHHHHHHHHHh---------hhHHHHHHhhcccch
Confidence            755533      35678999999999           9999999888866664432         22222  25666666


Q ss_pred             HHHhcccc
Q 030634          143 HGINQQTL  150 (174)
Q Consensus       143 ~~~~~~~~  150 (174)
                      +++-.|-.
T Consensus       244 ~hiflg~f  251 (639)
T KOG1130|consen  244 CHIFLGNF  251 (639)
T ss_pred             hhhhhccc
Confidence            66655443

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=97.53  E-value=0.0089  Score=50.82  Aligned_cols=92  Identities=16%  Similarity=0.186  Sum_probs=74.7

Q ss_pred             HHHHHHHhhCCCCHHHHHHHHHHHHHhcCccc--chhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCccch
Q 030634           19 KTAEANYAKDPLDADNLTRWGEALLELSQFES--VSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADL   96 (174)
Q Consensus        19 ~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~--~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~~~~~~   96 (174)
                      ..+++.++.+|.|.++|..+.......-....  ........+.-+.+|++||+.+|++...+..+-.+.....      
T Consensus         6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~------   79 (321)
T PF08424_consen    6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVW------   79 (321)
T ss_pred             HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC------
Confidence            56788899999999999999988776654322  1233445688899999999999999998877766666765      


Q ss_pred             hhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634           97 SEAKGDFDKASECFQRAVDEEPTNE  121 (174)
Q Consensus        97 ~~a~~~~~~Ai~~~~kAl~l~P~~~  121 (174)
                           +-++...-+++++..+|++.
T Consensus        80 -----~~~~l~~~we~~l~~~~~~~   99 (321)
T PF08424_consen   80 -----DSEKLAKKWEELLFKNPGSP   99 (321)
T ss_pred             -----CHHHHHHHHHHHHHHCCCCh
Confidence                 88888999999999999988

>PLN03077 Protein ECB2; Provisional

Probab=97.50  E-value=0.0018  Score=61.35  Aligned_cols=127  Identities=7%  Similarity=-0.004  Sum_probs=80.9

Q ss_pred             HHhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCccc-------------------------chhhhhhHHHHH
Q 030634            8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFES-------------------------VSDSKKIINEAI   62 (174)
Q Consensus         8 ~~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~-------------------------~~~~~~~~~eAi   62 (174)
                      |-+.|..++|++.+...    +.|..+|+.+...|...|+.+.                         +....|.+++|.
T Consensus       534 y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~  609 (857)
T PLN03077        534 YVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGL  609 (857)
T ss_pred             HHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHH
Confidence            55566667776666654    5566667777666666666521                         001123346666


Q ss_pred             HHHHHHHHhCCC--CHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH-------------------
Q 030634           63 SKFEEALVIDPA--KHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE-------------------  121 (174)
Q Consensus        63 ~~lekAl~ldP~--~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~-------------------  121 (174)
                      ..|+...+..+-  +...|..+..+|.+.|           ++++|.+.+++. .+.|+..                   
T Consensus       610 ~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G-----------~~~eA~~~~~~m-~~~pd~~~~~aLl~ac~~~~~~e~~e  677 (857)
T PLN03077        610 EYFHSMEEKYSITPNLKHYACVVDLLGRAG-----------KLTEAYNFINKM-PITPDPAVWGALLNACRIHRHVELGE  677 (857)
T ss_pred             HHHHHHHHHhCCCCchHHHHHHHHHHHhCC-----------CHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCChHHHH
Confidence            666665533222  2345566666666666           788888877764 3566544                   


Q ss_pred             -HHHHHHhcCCCChHHHHHHHHHHHhcccc
Q 030634          122 -LYQKSLEVSTKAPELHMELHKHGINQQTL  150 (174)
Q Consensus       122 -~y~~Al~l~~~~~~~~~~l~~~~~~~~~~  150 (174)
                       ..++.+++.|+++..|.-|+++|-..|+.
T Consensus       678 ~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~  707 (857)
T PLN03077        678 LAAQHIFELDPNSVGYYILLCNLYADAGKW  707 (857)
T ss_pred             HHHHHHHhhCCCCcchHHHHHHHHHHCCCh
Confidence             34567789999999999999999888876

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=97.49  E-value=0.00023  Score=41.02  Aligned_cols=32  Identities=31%  Similarity=0.609  Sum_probs=25.5

Q ss_pred             HHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHH--HhCCCC
Q 030634           78 TLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAV--DEEPTN  120 (174)
Q Consensus        78 a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl--~l~P~~  120 (174)
                      +|.+||.+|..+|           +|++|+.+|+++|  ..+|++
T Consensus         1 al~~Lg~~~~~~g-----------~~~~Ai~~y~~aL~l~~~~~~   34 (36)
T PF13176_consen    1 ALNNLGRIYRQQG-----------DYEKAIEYYEQALALARDPED   34 (36)
T ss_dssp             HHHHHHHHHHHCT------------HHHHHHHHHHHHHHHHHCT-
T ss_pred             CHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhcccccC
Confidence            5789999999999           9999999999955  445543

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.46  E-value=0.00084  Score=54.13  Aligned_cols=66  Identities=27%  Similarity=0.340  Sum_probs=56.0

Q ss_pred             HHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHH-----HHHHHHHHHHhCCCCccchhhhhcCHHHHHHH
Q 030634           35 LTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHY-----TLWSLGNAHTSCGFLTADLSEAKGDFDKASEC  109 (174)
Q Consensus        35 ~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~-----a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~  109 (174)
                      +-.-|+-++..|.|          ++|...|..||.+-|..+.     .|.|.|.++.+++           .++.|++-
T Consensus        98 lK~EGN~~F~ngdy----------eeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~-----------k~e~aI~d  156 (271)
T KOG4234|consen   98 LKKEGNELFKNGDY----------EEANSKYQEALESCPSTSTEERSILYSNRAAALIKLR-----------KWESAIED  156 (271)
T ss_pred             HHHHHHHhhhcccH----------HHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhh-----------hHHHHHHH
Confidence            33446667777777          9999999999999998664     4678999999988           99999999


Q ss_pred             HHHHHHhCCCCH
Q 030634          110 FQRAVDEEPTNE  121 (174)
Q Consensus       110 ~~kAl~l~P~~~  121 (174)
                      ..|||+++|.+.
T Consensus       157 csKaiel~pty~  168 (271)
T KOG4234|consen  157 CSKAIELNPTYE  168 (271)
T ss_pred             HHhhHhcCchhH
Confidence            999999999765

>smart00028 TPR Tetratricopeptide repeats

Probab=97.46  E-value=0.0002  Score=37.66  Aligned_cols=33  Identities=39%  Similarity=0.734  Sum_probs=30.3

Q ss_pred             HHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCC
Q 030634           77 YTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN  120 (174)
Q Consensus        77 ~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~  120 (174)
                      .+++.+|.++...|           ++++|+.+|+++++++|++
T Consensus         2 ~~~~~~a~~~~~~~-----------~~~~a~~~~~~~~~~~~~~   34 (34)
T smart00028        2 EALYNLGNAYLKLG-----------DYDEALEYYEKALELDPNN   34 (34)
T ss_pred             hHHHHHHHHHHHHh-----------hHHHHHHHHHHHHccCCCC
Confidence            57899999999988           9999999999999999964

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.45  E-value=0.0013  Score=48.76  Aligned_cols=82  Identities=28%  Similarity=0.272  Sum_probs=58.2

Q ss_pred             hhHHHHHHHHHHHHhhCCCC----------H------------HHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHH
Q 030634           12 LLSEHNRKTAEANYAKDPLD----------A------------DNLTRWGEALLELSQFESVSDSKKIINEAISKFEEAL   69 (174)
Q Consensus        12 ~~~~eAl~~~~~al~~~P~~----------~------------~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl   69 (174)
                      +..+.++..+++++.+-.++          .            .++..++..+...|++          ++|+..+++++
T Consensus        20 ~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~----------~~a~~~~~~~l   89 (146)
T PF03704_consen   20 GDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDY----------EEALRLLQRAL   89 (146)
T ss_dssp             T-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-H----------HHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCH----------HHHHHHHHHHH
Confidence            35677777788888753111          1            1223334444555555          99999999999


Q ss_pred             HhCCCCHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHH
Q 030634           70 VIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAV  114 (174)
Q Consensus        70 ~ldP~~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl  114 (174)
                      .+||-+-.+|..+-.+|..+|           +..+|+..|++..
T Consensus        90 ~~dP~~E~~~~~lm~~~~~~g-----------~~~~A~~~Y~~~~  123 (146)
T PF03704_consen   90 ALDPYDEEAYRLLMRALAAQG-----------RRAEALRVYERYR  123 (146)
T ss_dssp             HHSTT-HHHHHHHHHHHHHTT------------HHHHHHHHHHHH
T ss_pred             hcCCCCHHHHHHHHHHHHHCc-----------CHHHHHHHHHHHH
Confidence            999999999999999999999           8899998888764

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=97.45  E-value=0.00025  Score=39.17  Aligned_cols=33  Identities=33%  Similarity=0.551  Sum_probs=30.8

Q ss_pred             HHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCC
Q 030634           77 YTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN  120 (174)
Q Consensus        77 ~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~  120 (174)
                      ++++.+|.++...|           ++++|+..|++.++..|++
T Consensus         1 ~a~~~~a~~~~~~g-----------~~~~A~~~~~~~~~~~P~s   33 (33)
T PF13174_consen    1 DALYRLARCYYKLG-----------DYDEAIEYFQRLIKRYPDS   33 (33)
T ss_dssp             HHHHHHHHHHHHHC-----------HHHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHcc-----------CHHHHHHHHHHHHHHCcCC
Confidence            47899999999988           9999999999999999985

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=97.44  E-value=0.0006  Score=47.67  Aligned_cols=52  Identities=23%  Similarity=0.381  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634           59 NEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (174)
Q Consensus        59 ~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~  121 (174)
                      ...+..++++++.+|+|+.+.+.++..+...|           ++++|++.+-.+++.+|+..
T Consensus         5 ~~~~~al~~~~a~~P~D~~ar~~lA~~~~~~g-----------~~e~Al~~Ll~~v~~dr~~~   56 (90)
T PF14561_consen    5 APDIAALEAALAANPDDLDARYALADALLAAG-----------DYEEALDQLLELVRRDRDYE   56 (90)
T ss_dssp             -HHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT------------HHHHHHHHHHHHCC-TTCC
T ss_pred             cccHHHHHHHHHcCCCCHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHHhCcccc
Confidence            35677899999999999999999999999999           99999999999999999874

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=97.41  E-value=0.0013  Score=57.09  Aligned_cols=82  Identities=23%  Similarity=0.197  Sum_probs=72.4

Q ss_pred             hhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCC
Q 030634           12 LLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGF   91 (174)
Q Consensus        12 ~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~   91 (174)
                      +....-++.+++.++.+|++|..+..||..+...+.+          .+|-..|+.|++.-|+..+ +.-+|.++..+| 
T Consensus       308 ~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w----------~kA~~~leaAl~~~~s~~~-~~~la~~~~~~g-  375 (400)
T COG3071         308 GDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLW----------GKASEALEAALKLRPSASD-YAELADALDQLG-  375 (400)
T ss_pred             CCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHH----------HHHHHHHHHHHhcCCChhh-HHHHHHHHHHcC-
Confidence            3556677888999999999999999999999999988          9999999999999887655 577899999999 


Q ss_pred             CccchhhhhcCHHHHHHHHHHHHH
Q 030634           92 LTADLSEAKGDFDKASECFQRAVD  115 (174)
Q Consensus        92 ~~~~~~~a~~~~~~Ai~~~~kAl~  115 (174)
                                +..+|-+++++++.
T Consensus       376 ----------~~~~A~~~r~e~L~  389 (400)
T COG3071         376 ----------EPEEAEQVRREALL  389 (400)
T ss_pred             ----------ChHHHHHHHHHHHH
Confidence                      99999999999874

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.39  E-value=0.0026  Score=53.61  Aligned_cols=102  Identities=15%  Similarity=0.124  Sum_probs=81.4

Q ss_pred             HhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccch---h------hhhhHH---HHHH------------H
Q 030634            9 DRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVS---D------SKKIIN---EAIS------------K   64 (174)
Q Consensus         9 ~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~---~------~~~~~~---eAi~------------~   64 (174)
                      -..+.+.+|...+..++..+|.+.++...++.+++..|+.+...   +      ..+...   ..++            .
T Consensus       145 ~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~~  224 (304)
T COG3118         145 IEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQD  224 (304)
T ss_pred             hhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHHH
Confidence            34578999999999999999999999999999999999985311   1      111111   1233            3


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634           65 FEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (174)
Q Consensus        65 lekAl~ldP~~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~  121 (174)
                      +++.+.-||+|+++.+.|+..+...|           ++++|++++-..++.|-+..
T Consensus       225 l~~~~aadPdd~~aa~~lA~~~~~~g-----------~~e~Ale~Ll~~l~~d~~~~  270 (304)
T COG3118         225 LQRRLAADPDDVEAALALADQLHLVG-----------RNEAALEHLLALLRRDRGFE  270 (304)
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhccccc
Confidence            44556779999999999999999999           99999999999999987655

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=97.38  E-value=0.001  Score=60.27  Aligned_cols=67  Identities=15%  Similarity=0.209  Sum_probs=63.2

Q ss_pred             HHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHH
Q 030634           34 NLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRA  113 (174)
Q Consensus        34 a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kA  113 (174)
                      +++.++..+...|++          ++|+...++||+..|..++.|+..|.+|-..|           ++.+|.++++.|
T Consensus       196 ~~~~lAqhyd~~g~~----------~~Al~~Id~aI~htPt~~ely~~KarilKh~G-----------~~~~Aa~~~~~A  254 (517)
T PF12569_consen  196 TLYFLAQHYDYLGDY----------EKALEYIDKAIEHTPTLVELYMTKARILKHAG-----------DLKEAAEAMDEA  254 (517)
T ss_pred             HHHHHHHHHHHhCCH----------HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCC-----------CHHHHHHHHHHH
Confidence            447778889888888          99999999999999999999999999999999           999999999999


Q ss_pred             HHhCCCCH
Q 030634          114 VDEEPTNE  121 (174)
Q Consensus       114 l~l~P~~~  121 (174)
                      -.+|+.+-
T Consensus       255 r~LD~~DR  262 (517)
T PF12569_consen  255 RELDLADR  262 (517)
T ss_pred             HhCChhhH
Confidence            99999987

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=97.37  E-value=0.0051  Score=50.78  Aligned_cols=98  Identities=14%  Similarity=0.121  Sum_probs=79.9

Q ss_pred             hhhHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHH---HHHHHHH
Q 030634           11 LLLSEHNRKTAEANYAKDPLD---ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHY---TLWSLGN   84 (174)
Q Consensus        11 ~~~~~eAl~~~~~al~~~P~~---~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~---a~~~LG~   84 (174)
                      -|.+++|.+.++.+....|.+   .++...++.++...+++          ++|+...++-+++.|.+++   ++|..|.
T Consensus        47 ~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y----------~~A~~~~drFi~lyP~~~n~dY~~YlkgL  116 (254)
T COG4105          47 KGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEY----------DLALAYIDRFIRLYPTHPNADYAYYLKGL  116 (254)
T ss_pred             cCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccH----------HHHHHHHHHHHHhCCCCCChhHHHHHHHH
Confidence            468999999999999998875   67899999999999999          9999999999999999886   4677888


Q ss_pred             HHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634           85 AHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (174)
Q Consensus        85 a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~  121 (174)
                      ++...=   +..........+|+.-|+..+..-|++.
T Consensus       117 s~~~~i---~~~~rDq~~~~~A~~~f~~~i~ryPnS~  150 (254)
T COG4105         117 SYFFQI---DDVTRDQSAARAAFAAFKELVQRYPNSR  150 (254)
T ss_pred             HHhccC---CccccCHHHHHHHHHHHHHHHHHCCCCc
Confidence            865532   1222222346789999999999999987

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.36  E-value=0.0049  Score=51.35  Aligned_cols=92  Identities=16%  Similarity=0.082  Sum_probs=73.6

Q ss_pred             HhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh-cCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 030634            9 DRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLEL-SQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT   87 (174)
Q Consensus         9 ~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~-g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~   87 (174)
                      .|.+-.++|++.+.+|.+..+-..++|...|.+-... ++.          +.|..+|+.+++..|++...|......+.
T Consensus        12 ~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~----------~~A~~Ife~glk~f~~~~~~~~~Y~~~l~   81 (280)
T PF05843_consen   12 RRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDP----------KRARKIFERGLKKFPSDPDFWLEYLDFLI   81 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-H----------HHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCH----------HHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence            4556689999999999976677889998888886664 333          56999999999999999999999889999


Q ss_pred             hCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634           88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (174)
Q Consensus        88 ~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~  121 (174)
                      .+|           +.+.|...|++++..-|...
T Consensus        82 ~~~-----------d~~~aR~lfer~i~~l~~~~  104 (280)
T PF05843_consen   82 KLN-----------DINNARALFERAISSLPKEK  104 (280)
T ss_dssp             HTT------------HHHHHHHHHHHCCTSSCHH
T ss_pred             HhC-----------cHHHHHHHHHHHHHhcCchh
Confidence            988           88899999999887766554

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.30  E-value=0.0047  Score=51.52  Aligned_cols=92  Identities=22%  Similarity=0.123  Sum_probs=72.4

Q ss_pred             hHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCC
Q 030634           13 LSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFL   92 (174)
Q Consensus        13 ~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~~   92 (174)
                      ...+|.-.|++.-+..|..+..+...++|++.++++          ++|...++.||..+|++++++.|+-.+-..+|  
T Consensus       188 k~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~----------eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~G--  255 (299)
T KOG3081|consen  188 KIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRY----------EEAESLLEEALDKDAKDPETLANLIVLALHLG--  255 (299)
T ss_pred             hhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCH----------HHHHHHHHHHHhccCCCHHHHHHHHHHHHHhC--
Confidence            466777788888887888888888888888888888          99999999999999999999999888888877  


Q ss_pred             ccchhhhhcCHHHHHHHHHHHHHhCCCCHHHH
Q 030634           93 TADLSEAKGDFDKASECFQRAVDEEPTNELYQ  124 (174)
Q Consensus        93 ~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~~y~  124 (174)
                              .+.+-...+..+.....|++++.+
T Consensus       256 --------kd~~~~~r~l~QLk~~~p~h~~vk  279 (299)
T KOG3081|consen  256 --------KDAEVTERNLSQLKLSHPEHPFVK  279 (299)
T ss_pred             --------CChHHHHHHHHHHHhcCCcchHHH
Confidence                    233444556666667788887443

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=97.29  E-value=0.0054  Score=55.01  Aligned_cols=125  Identities=21%  Similarity=0.240  Sum_probs=84.0

Q ss_pred             ChhhHHhhhhHHHHHHHHHHHHhhCC---C-----------C----HHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHH
Q 030634            4 SQSDFDRLLLSEHNRKTAEANYAKDP---L-----------D----ADNLTRWGEALLELSQFESVSDSKKIINEAISKF   65 (174)
Q Consensus         4 ~~~~~~~~~~~~eAl~~~~~al~~~P---~-----------~----~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~l   65 (174)
                      +++.-+....|.+|++..+..+..+.   .           +    .-+..++|.|..++|+.          +|||+.+
T Consensus       213 A~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~----------~EAIk~~  282 (539)
T PF04184_consen  213 ASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRL----------REAIKMF  282 (539)
T ss_pred             ccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCCh----------HHHHHHH
Confidence            44556777788888888888877642   1           1    33557788999999998          9999999


Q ss_pred             HHHHHhCCC--CHHHHHHHHHHHHhCCCCccchhhhhcCHH------HHHHHHHHHHHh--------CCCCH--------
Q 030634           66 EEALVIDPA--KHYTLWSLGNAHTSCGFLTADLSEAKGDFD------KASECFQRAVDE--------EPTNE--------  121 (174)
Q Consensus        66 ekAl~ldP~--~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~------~Ai~~~~kAl~l--------~P~~~--------  121 (174)
                      +..++.+|.  +..++.+|-.++..+++ .++...-..+|+      .|--+|.+||-.        .|+.+        
T Consensus       283 rdLlke~p~~~~l~IrenLie~LLelq~-Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~a  361 (539)
T PF04184_consen  283 RDLLKEFPNLDNLNIRENLIEALLELQA-YADVQALLAKYDDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPA  361 (539)
T ss_pred             HHHHhhCCccchhhHHHHHHHHHHhcCC-HHHHHHHHHHhccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChh
Confidence            999998886  45689999999999882 111111112222      255556665521        23221        


Q ss_pred             ------HHHHHHhcCCCChHHHHH
Q 030634          122 ------LYQKSLEVSTKAPELHME  139 (174)
Q Consensus       122 ------~y~~Al~l~~~~~~~~~~  139 (174)
                            ..++|.+.||..|.+...
T Consensus       362 e~~aveAi~RAvefNPHVp~YLLe  385 (539)
T PF04184_consen  362 EMNAVEAIHRAVEFNPHVPKYLLE  385 (539)
T ss_pred             HHHHHHHHHHHHHhCCCCchhhhc
Confidence                  577888888888876543

The molecular function of this protein is uncertain.

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=97.28  E-value=0.003  Score=58.57  Aligned_cols=128  Identities=16%  Similarity=0.103  Sum_probs=66.1

Q ss_pred             HHhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Q 030634            8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVI--DPAKHYTLWSLGNA   85 (174)
Q Consensus         8 ~~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~l--dP~~~~a~~~LG~a   85 (174)
                      |-+.|++++|.+.+++..+   .|...|+.+...|...|+.          ++|+..|++..+.  .|+ ..++..+-.+
T Consensus       370 y~k~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~~----------~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a  435 (697)
T PLN03081        370 YSKWGRMEDARNVFDRMPR---KNLISWNALIAGYGNHGRG----------TKAVEMFERMIAEGVAPN-HVTFLAVLSA  435 (697)
T ss_pred             HHHCCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCCC-HHHHHHHHHH
Confidence            4556667777777765532   2455667777777666666          5555555554432  222 2223333334


Q ss_pred             HHhCCCC----------------cc---------chhhhhcCHHHHHHHHHHHHHhCCCCH-------------------
Q 030634           86 HTSCGFL----------------TA---------DLSEAKGDFDKASECFQRAVDEEPTNE-------------------  121 (174)
Q Consensus        86 ~~~lG~~----------------~~---------~~~~a~~~~~~Ai~~~~kAl~l~P~~~-------------------  121 (174)
                      +...|..                .|         +..-..|++++|.+.+++. ...|+..                   
T Consensus       436 ~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~-~~~p~~~~~~~Ll~a~~~~g~~~~a~  514 (697)
T PLN03081        436 CRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA-PFKPTVNMWAALLTACRIHKNLELGR  514 (697)
T ss_pred             HhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCcHHHH
Confidence            4444400                00         0000011666666665543 2334332                   


Q ss_pred             -HHHHHHhcCCCChHHHHHHHHHHHhcccc
Q 030634          122 -LYQKSLEVSTKAPELHMELHKHGINQQTL  150 (174)
Q Consensus       122 -~y~~Al~l~~~~~~~~~~l~~~~~~~~~~  150 (174)
                       .+++.+++.|..+..|..|+++|...|+.
T Consensus       515 ~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~  544 (697)
T PLN03081        515 LAAEKLYGMGPEKLNNYVVLLNLYNSSGRQ  544 (697)
T ss_pred             HHHHHHhCCCCCCCcchHHHHHHHHhCCCH
Confidence             33455567777777777777777777766

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.26  E-value=0.0012  Score=54.24  Aligned_cols=84  Identities=18%  Similarity=0.197  Sum_probs=65.3

Q ss_pred             hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH---HH-HHHHhcCCC
Q 030634           57 IINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE---LY-QKSLEVSTK  132 (174)
Q Consensus        57 ~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~---~y-~~Al~l~~~  132 (174)
                      .+..||.+|-+||.++|..+..|.|.+.+|+++.           +++.+..-.++|++++|+..   .+ -.++-....
T Consensus        25 ~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~-----------~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~   93 (284)
T KOG4642|consen   25 RYDDAIDCYSRAICINPTVASYYTNRALCHLKLK-----------HWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKG   93 (284)
T ss_pred             hhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhh-----------hhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhcc
Confidence            3499999999999999999999999999999988           99999999999999999877   22 233344455


Q ss_pred             ChHHHHHHHHH--HHhccccC
Q 030634          133 APELHMELHKH--GINQQTLG  151 (174)
Q Consensus       133 ~~~~~~~l~~~--~~~~~~~~  151 (174)
                      .+++-..|...  +..++.+.
T Consensus        94 ~~eaI~~Lqra~sl~r~~~~~  114 (284)
T KOG4642|consen   94 YDEAIKVLQRAYSLLREQPFT  114 (284)
T ss_pred             ccHHHHHHHHHHHHHhcCCCC
Confidence            56666666655  44444443

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=97.25  E-value=0.0014  Score=60.77  Aligned_cols=86  Identities=14%  Similarity=0.029  Sum_probs=69.2

Q ss_pred             HHhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 030634            8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT   87 (174)
Q Consensus         8 ~~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~   87 (174)
                      |-+.|++++|.+.+++. ...| +...|..+..++...|++          +.|...+++.++++|++...|..|+++|.
T Consensus       472 l~r~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~~~g~~----------~~a~~~~~~l~~~~p~~~~~y~~L~~~y~  539 (697)
T PLN03081        472 LGREGLLDEAYAMIRRA-PFKP-TVNMWAALLTACRIHKNL----------ELGRLAAEKLYGMGPEKLNNYVVLLNLYN  539 (697)
T ss_pred             HHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCCc----------HHHHHHHHHHhCCCCCCCcchHHHHHHHH
Confidence            45667788888777653 2223 455677777777777777          99999999999999999999999999999


Q ss_pred             hCCCCccchhhhhcCHHHHHHHHHHHHHh
Q 030634           88 SCGFLTADLSEAKGDFDKASECFQRAVDE  116 (174)
Q Consensus        88 ~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l  116 (174)
                      ..|           ++++|.+.+++..+.
T Consensus       540 ~~G-----------~~~~A~~v~~~m~~~  557 (697)
T PLN03081        540 SSG-----------RQAEAAKVVETLKRK  557 (697)
T ss_pred             hCC-----------CHHHHHHHHHHHHHc
Confidence            988           999999999887755

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.24  E-value=0.0017  Score=55.58  Aligned_cols=90  Identities=13%  Similarity=0.105  Sum_probs=76.3

Q ss_pred             hhhhHHHHHHHHHHHHhhCCC----CHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 030634           10 RLLLSEHNRKTAEANYAKDPL----DADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNA   85 (174)
Q Consensus        10 ~~~~~~eAl~~~~~al~~~P~----~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a   85 (174)
                      .-.+|..|...|.+.+...-.    ++..|.|.+.|...+|+|          ..||.-..+|++++|.+..+++.-+.|
T Consensus        93 K~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~Ny----------Rs~l~Dcs~al~~~P~h~Ka~~R~Akc  162 (390)
T KOG0551|consen   93 KEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNY----------RSALNDCSAALKLKPTHLKAYIRGAKC  162 (390)
T ss_pred             HhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHH----------HHHHHHHHHHHhcCcchhhhhhhhhHH
Confidence            345899999999999997543    466789999999999999          999999999999999999999999999


Q ss_pred             HHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCC
Q 030634           86 HTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN  120 (174)
Q Consensus        86 ~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~  120 (174)
                      +..+.           ++++|..+.+..+.++-+.
T Consensus       163 ~~eLe-----------~~~~a~nw~ee~~~~d~e~  186 (390)
T KOG0551|consen  163 LLELE-----------RFAEAVNWCEEGLQIDDEA  186 (390)
T ss_pred             HHHHH-----------HHHHHHHHHhhhhhhhHHH
Confidence            99987           8777777777766665443

>smart00028 TPR Tetratricopeptide repeats

Probab=97.24  E-value=0.00054  Score=35.83  Aligned_cols=33  Identities=36%  Similarity=0.694  Sum_probs=30.4

Q ss_pred             HHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCC
Q 030634           33 DNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAK   75 (174)
Q Consensus        33 ~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~   75 (174)
                      .++.++|.++..++++          ++|+..|+++++++|++
T Consensus         2 ~~~~~~a~~~~~~~~~----------~~a~~~~~~~~~~~~~~   34 (34)
T smart00028        2 EALYNLGNAYLKLGDY----------DEALEYYEKALELDPNN   34 (34)
T ss_pred             hHHHHHHHHHHHHhhH----------HHHHHHHHHHHccCCCC
Confidence            5789999999999999          99999999999999874

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=97.22  E-value=0.0033  Score=43.91  Aligned_cols=64  Identities=23%  Similarity=0.223  Sum_probs=52.1

Q ss_pred             HHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHhCC
Q 030634           17 NRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAK--HYTLWSLGNAHTSCG   90 (174)
Q Consensus        17 Al~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~--~~a~~~LG~a~~~lG   90 (174)
                      .+..+++.++.+|+|+++.+.+|..+...|++          ++|+..+-.+++.+|++  ..+.-.|=.++..+|
T Consensus         7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~----------e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg   72 (90)
T PF14561_consen    7 DIAALEAALAANPDDLDARYALADALLAAGDY----------EEALDQLLELVRRDRDYEDDAARKRLLDIFELLG   72 (90)
T ss_dssp             HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-H----------HHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-
T ss_pred             cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHhCccccccHHHHHHHHHHHHcC
Confidence            45678889999999999999999999999999          99999999999999886  566666666677766

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=97.21  E-value=0.0058  Score=53.18  Aligned_cols=91  Identities=18%  Similarity=0.089  Sum_probs=73.5

Q ss_pred             hHHhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 030634            7 DFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAH   86 (174)
Q Consensus         7 ~~~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~   86 (174)
                      .+.+++..++|.+..+.+++..-+.. ....++.+  ..++.          ..=++..++.++..|+++..+..||..+
T Consensus       272 ~li~l~~~~~A~~~i~~~Lk~~~D~~-L~~~~~~l--~~~d~----------~~l~k~~e~~l~~h~~~p~L~~tLG~L~  338 (400)
T COG3071         272 RLIRLGDHDEAQEIIEDALKRQWDPR-LCRLIPRL--RPGDP----------EPLIKAAEKWLKQHPEDPLLLSTLGRLA  338 (400)
T ss_pred             HHHHcCChHHHHHHHHHHHHhccChh-HHHHHhhc--CCCCc----------hHHHHHHHHHHHhCCCChhHHHHHHHHH
Confidence            46788899999999999998765544 22222222  23334          7888899999999999999999999999


Q ss_pred             HhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634           87 TSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (174)
Q Consensus        87 ~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~  121 (174)
                      .+.+           .+.+|..+|+.|++..|+..
T Consensus       339 ~k~~-----------~w~kA~~~leaAl~~~~s~~  362 (400)
T COG3071         339 LKNK-----------LWGKASEALEAALKLRPSAS  362 (400)
T ss_pred             HHhh-----------HHHHHHHHHHHHHhcCCChh
Confidence            9987           99999999999999999755

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=97.21  E-value=0.00077  Score=37.11  Aligned_cols=33  Identities=27%  Similarity=0.456  Sum_probs=30.7

Q ss_pred             HHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCC
Q 030634           33 DNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAK   75 (174)
Q Consensus        33 ~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~   75 (174)
                      ++++++|.++...|++          ++|+..|+++++..|++
T Consensus         1 ~a~~~~a~~~~~~g~~----------~~A~~~~~~~~~~~P~s   33 (33)
T PF13174_consen    1 DALYRLARCYYKLGDY----------DEAIEYFQRLIKRYPDS   33 (33)
T ss_dssp             HHHHHHHHHHHHHCHH----------HHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHccCH----------HHHHHHHHHHHHHCcCC
Confidence            5789999999999999          99999999999999985

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.19  E-value=0.0053  Score=54.27  Aligned_cols=110  Identities=21%  Similarity=0.201  Sum_probs=73.1

Q ss_pred             hhhHHHHHHHHHHHHhhC------CCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCC------CCHHH
Q 030634           11 LLLSEHNRKTAEANYAKD------PLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDP------AKHYT   78 (174)
Q Consensus        11 ~~~~~eAl~~~~~al~~~------P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP------~~~~a   78 (174)
                      +|.|+-|++.|.+++.+.      .-.++..|.||+.|..+.++          ++||..+.+=|.|.-      ....+
T Consensus       248 lg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~----------~kAI~Yh~rHLaIAqeL~DriGe~Ra  317 (639)
T KOG1130|consen  248 LGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEV----------QKAITYHQRHLAIAQELEDRIGELRA  317 (639)
T ss_pred             hcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHH----------HHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence            456677777766655531      22455667777777776666          778777776655522      24456


Q ss_pred             HHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCHHHHHHHhcCCCC--hHHHHHHHHHHHhcccc
Q 030634           79 LWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLEVSTKA--PELHMELHKHGINQQTL  150 (174)
Q Consensus        79 ~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~~y~~Al~l~~~~--~~~~~~l~~~~~~~~~~  150 (174)
                      +|.||+++..+|           ..++|+.+..+.+         +.+++++..+  ..+..||.+.-...|..
T Consensus       318 cwSLgna~~alg-----------~h~kAl~fae~hl---------~~s~ev~D~sgelTar~Nlsdl~~~lG~~  371 (639)
T KOG1130|consen  318 CWSLGNAFNALG-----------EHRKALYFAELHL---------RSSLEVNDTSGELTARDNLSDLILELGQE  371 (639)
T ss_pred             HHHHHHHHHhhh-----------hHHHHHHHHHHHH---------HHHHHhCCcchhhhhhhhhHHHHHHhCCC
Confidence            777888887777           7788887777744         4466777665  44788888887777766

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.17  E-value=0.011  Score=47.28  Aligned_cols=107  Identities=17%  Similarity=0.179  Sum_probs=97.7

Q ss_pred             HhhhhHHHHHHHHHHHHh-hCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCC--CHHHHHHHHHH
Q 030634            9 DRLLLSEHNRKTAEANYA-KDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPA--KHYTLWSLGNA   85 (174)
Q Consensus         9 ~~~~~~~eAl~~~~~al~-~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~--~~~a~~~LG~a   85 (174)
                      ..+|++.||...|++++. +...|+..+..++.+++.++++          .+|...+++..+-+|.  .++.+..+|.+
T Consensus       100 ~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~----------A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~  169 (251)
T COG4700         100 AELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEF----------AAAQQTLEDLMEYNPAFRSPDGHLLFART  169 (251)
T ss_pred             HHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccH----------HHHHHHHHHHhhcCCccCCCCchHHHHHH
Confidence            468999999999999988 7889999999999999999999          9999999999999887  56778899999


Q ss_pred             HHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCHHHHHHHhcCCCChHHHHHHHHHHHhcccc
Q 030634           86 HTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLEVSTKAPELHMELHKHGINQQTL  150 (174)
Q Consensus        86 ~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~~y~~Al~l~~~~~~~~~~l~~~~~~~~~~  150 (174)
                      |..+|           .+.+|...|+.++.--|+              ++.....+.-+..|||+
T Consensus       170 laa~g-----------~~a~Aesafe~a~~~ypg--------------~~ar~~Y~e~La~qgr~  209 (251)
T COG4700         170 LAAQG-----------KYADAESAFEVAISYYPG--------------PQARIYYAEMLAKQGRL  209 (251)
T ss_pred             HHhcC-----------CchhHHHHHHHHHHhCCC--------------HHHHHHHHHHHHHhcch
Confidence            99999           999999999998888884              78888888999999988

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=97.10  E-value=0.011  Score=44.71  Aligned_cols=75  Identities=19%  Similarity=0.292  Sum_probs=61.9

Q ss_pred             CCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHH-hCCCCH-HHHHHHHHHHHhCCCCccchhhhhcCHHHH
Q 030634           29 PLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALV-IDPAKH-YTLWSLGNAHTSCGFLTADLSEAKGDFDKA  106 (174)
Q Consensus        29 P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~-ldP~~~-~a~~~LG~a~~~lG~~~~~~~~a~~~~~~A  106 (174)
                      .-..+..++++.++....+       +..+++.|.+++..++ -.|..- +..|.|+..++++|           +|++|
T Consensus        29 ~~s~~s~f~lAwaLV~S~~-------~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlk-----------eY~~s   90 (149)
T KOG3364|consen   29 DVSKQSQFNLAWALVRSRD-------TEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLK-----------EYSKS   90 (149)
T ss_pred             cchHHHHHHHHHHHHcccc-------hHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHh-----------hHHHH
Confidence            4456788888888877544       3455999999999997 455443 57889999999988           99999


Q ss_pred             HHHHHHHHHhCCCCH
Q 030634          107 SECFQRAVDEEPTNE  121 (174)
Q Consensus       107 i~~~~kAl~l~P~~~  121 (174)
                      +.+.+..|+.+|+|.
T Consensus        91 ~~yvd~ll~~e~~n~  105 (149)
T KOG3364|consen   91 LRYVDALLETEPNNR  105 (149)
T ss_pred             HHHHHHHHhhCCCcH
Confidence            999999999999998

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.07  E-value=0.0016  Score=54.09  Aligned_cols=49  Identities=31%  Similarity=0.429  Sum_probs=37.5

Q ss_pred             hHHHHHHHHHHHHHh--CCCC----HHHHHHHHHHHHhC-CCCccchhhhhcCHHHHHHHHHHHHHh
Q 030634           57 IINEAISKFEEALVI--DPAK----HYTLWSLGNAHTSC-GFLTADLSEAKGDFDKASECFQRAVDE  116 (174)
Q Consensus        57 ~~~eAi~~lekAl~l--dP~~----~~a~~~LG~a~~~l-G~~~~~~~~a~~~~~~Ai~~~~kAl~l  116 (174)
                      .+++|+.+|++|+.+  .-.+    ..++..+|.+|... |           ++++|+++|++|+++
T Consensus        89 ~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~-----------d~e~Ai~~Y~~A~~~  144 (282)
T PF14938_consen   89 DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLG-----------DYEKAIEYYQKAAEL  144 (282)
T ss_dssp             THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT-------------HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHH
Confidence            348999999999987  2222    34678888888887 7           999999999999987

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.04  E-value=0.0049  Score=51.20  Aligned_cols=93  Identities=17%  Similarity=0.150  Sum_probs=71.3

Q ss_pred             HHhh-hhHHHHHHHHHHHHhhC--CCC----HHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCC----CH
Q 030634            8 FDRL-LLSEHNRKTAEANYAKD--PLD----ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPA----KH   76 (174)
Q Consensus         8 ~~~~-~~~~eAl~~~~~al~~~--P~~----~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~----~~   76 (174)
                      |+.. +.+++|++.|++|++..  .+.    ..++.++|.++..+|++          ++|+..|+++....-+    ..
T Consensus       124 ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y----------~~A~~~~e~~~~~~l~~~l~~~  193 (282)
T PF14938_consen  124 YEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRY----------EEAIEIYEEVAKKCLENNLLKY  193 (282)
T ss_dssp             HCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-H----------HHHHHHHHHHHHTCCCHCTTGH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCH----------HHHHHHHHHHHHHhhcccccch
Confidence            5566 89999999999999962  122    45778899999999998          9999999999875322    12


Q ss_pred             ---HHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634           77 ---YTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (174)
Q Consensus        77 ---~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~  121 (174)
                         ..++..+.|+...|           ++-.|...+++....+|...
T Consensus       194 ~~~~~~l~a~l~~L~~~-----------D~v~A~~~~~~~~~~~~~F~  230 (282)
T PF14938_consen  194 SAKEYFLKAILCHLAMG-----------DYVAARKALERYCSQDPSFA  230 (282)
T ss_dssp             HHHHHHHHHHHHHHHTT------------HHHHHHHHHHHGTTSTTST
T ss_pred             hHHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHhhCCCCC
Confidence               34567888999988           99999999999999999765

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=97.03  E-value=0.01  Score=53.34  Aligned_cols=86  Identities=10%  Similarity=-0.005  Sum_probs=74.5

Q ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCccc
Q 030634           16 HNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTAD   95 (174)
Q Consensus        16 eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~~~~~   95 (174)
                      .-...|+.|....+.|+..|..+..-..+.+.+          .+--.+|.+++...|++++.|..-+.=.+..+     
T Consensus        89 rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~----------~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n-----  153 (568)
T KOG2396|consen   89 RIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTY----------GEVKKIFAAMLAKHPNNPDLWIYAAKWEFEIN-----  153 (568)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcch----------hHHHHHHHHHHHhCCCCchhHHhhhhhHHhhc-----
Confidence            345678999999999999999998777776666          88889999999999999999998877766665     


Q ss_pred             hhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634           96 LSEAKGDFDKASECFQRAVDEEPTNE  121 (174)
Q Consensus        96 ~~~a~~~~~~Ai~~~~kAl~l~P~~~  121 (174)
                           -+.+.|...|.++|+.+|+++
T Consensus       154 -----~ni~saRalflrgLR~npdsp  174 (568)
T KOG2396|consen  154 -----LNIESARALFLRGLRFNPDSP  174 (568)
T ss_pred             -----cchHHHHHHHHHHhhcCCCCh
Confidence                 249999999999999999999

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=97.02  E-value=0.0093  Score=53.53  Aligned_cols=92  Identities=17%  Similarity=0.196  Sum_probs=62.2

Q ss_pred             hHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCC--------------C---
Q 030634           13 LSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPA--------------K---   75 (174)
Q Consensus        13 ~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~--------------~---   75 (174)
                      ...+-++.+.+|++++|+.+++|..|+.--..     .+.++...+.+|++.-+..+..+..              +   
T Consensus       183 np~aRIkaA~eALei~pdCAdAYILLAEEeA~-----Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~  257 (539)
T PF04184_consen  183 NPQARIKAAKEALEINPDCADAYILLAEEEAS-----TIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNV  257 (539)
T ss_pred             CHHHHHHHHHHHHHhhhhhhHHHhhccccccc-----CHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccch
Confidence            56677899999999999999999888763211     1112222234444444444433220              1   


Q ss_pred             -HHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCC
Q 030634           76 -HYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN  120 (174)
Q Consensus        76 -~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~  120 (174)
                       ..+...||+|..++|           +.++|++.++..++.+|..
T Consensus       258 ~~y~KrRLAmCarklG-----------r~~EAIk~~rdLlke~p~~  292 (539)
T PF04184_consen  258 LVYAKRRLAMCARKLG-----------RLREAIKMFRDLLKEFPNL  292 (539)
T ss_pred             hhhhHHHHHHHHHHhC-----------ChHHHHHHHHHHHhhCCcc
Confidence             224467899999988           9999999999999998864

The molecular function of this protein is uncertain.

>PLN03218 maturation of RBCL 1; Provisional

Probab=96.94  E-value=0.065  Score=52.56  Aligned_cols=85  Identities=9%  Similarity=0.019  Sum_probs=43.8

Q ss_pred             HhhhhHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Q 030634            9 DRLLLSEHNRKTAEANYAKDPL-DADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVI--DPAKHYTLWSLGNA   85 (174)
Q Consensus         9 ~~~~~~~eAl~~~~~al~~~P~-~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~l--dP~~~~a~~~LG~a   85 (174)
                      -+.|.+++|++.+.+..+.... |...|..+-..|...|++          ++|+..|++..+.  .|+ ...|..+-.+
T Consensus       483 ~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~----------eeAl~lf~~M~~~Gv~PD-~vTYnsLI~a  551 (1060)
T PLN03218        483 AKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQV----------AKAFGAYGIMRSKNVKPD-RVVFNALISA  551 (1060)
T ss_pred             HhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCH----------HHHHHHHHHHHHcCCCCC-HHHHHHHHHH
Confidence            3445555566655555554322 455555555555555555          5555555554432  222 3444555555


Q ss_pred             HHhCCCCccchhhhhcCHHHHHHHHHHHHH
Q 030634           86 HTSCGFLTADLSEAKGDFDKASECFQRAVD  115 (174)
Q Consensus        86 ~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~  115 (174)
                      |...|           ++++|.+.|++..+
T Consensus       552 ~~k~G-----------~~deA~~lf~eM~~  570 (1060)
T PLN03218        552 CGQSG-----------AVDRAFDVLAEMKA  570 (1060)
T ss_pred             HHHCC-----------CHHHHHHHHHHHHH
Confidence            55555           55555555555543

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=96.91  E-value=0.0048  Score=39.00  Aligned_cols=37  Identities=27%  Similarity=0.403  Sum_probs=31.4

Q ss_pred             HHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCHHHH
Q 030634           77 YTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQ  124 (174)
Q Consensus        77 ~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~~y~  124 (174)
                      +.+|.++..++++|           +|++|..+.+++|+++|+|....
T Consensus         2 d~lY~lAig~ykl~-----------~Y~~A~~~~~~lL~~eP~N~Qa~   38 (53)
T PF14853_consen    2 DCLYYLAIGHYKLG-----------EYEKARRYCDALLEIEPDNRQAQ   38 (53)
T ss_dssp             HHHHHHHHHHHHTT------------HHHHHHHHHHHHHHTTS-HHHH
T ss_pred             hhHHHHHHHHHHhh-----------hHHHHHHHHHHHHhhCCCcHHHH
Confidence            46789999999999           99999999999999999998443

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=96.89  E-value=0.022  Score=49.63  Aligned_cols=102  Identities=15%  Similarity=0.083  Sum_probs=73.8

Q ss_pred             hhHHhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH---hcCcccchhhhhhHHHHHHHHHH-HHHhCCCCHHHHHH
Q 030634            6 SDFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLE---LSQFESVSDSKKIINEAISKFEE-ALVIDPAKHYTLWS   81 (174)
Q Consensus         6 ~~~~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~---~g~~~~~~~~~~~~~eAi~~lek-Al~ldP~~~~a~~~   81 (174)
                      .|||.|...-++++..-.-  .-++.+.+.+.+|.++..   .|+.          ++|+..+.. .....+.+++.+-.
T Consensus       155 qdydamI~Lve~l~~~p~~--~~~~~~~i~~~yafALnRrn~~gdr----------e~Al~il~~~l~~~~~~~~d~~gL  222 (374)
T PF13281_consen  155 QDYDAMIKLVETLEALPTC--DVANQHNIKFQYAFALNRRNKPGDR----------EKALQILLPVLESDENPDPDTLGL  222 (374)
T ss_pred             hhHHHHHHHHHHhhccCcc--chhcchHHHHHHHHHHhhcccCCCH----------HHHHHHHHHHHhccCCCChHHHHH
Confidence            4677776666665543110  035678888999999988   5555          999999999 55778889999999


Q ss_pred             HHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634           82 LGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (174)
Q Consensus        82 LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~  121 (174)
                      +|.+|-.+=  ..........+++|+.+|+++.+++|+.-
T Consensus       223 ~GRIyKD~~--~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y  260 (374)
T PF13281_consen  223 LGRIYKDLF--LESNFTDRESLDKAIEWYRKGFEIEPDYY  260 (374)
T ss_pred             HHHHHHHHH--HHcCccchHHHHHHHHHHHHHHcCCcccc
Confidence            999996532  11111223458999999999999998754

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=96.85  E-value=0.014  Score=48.25  Aligned_cols=70  Identities=26%  Similarity=0.260  Sum_probs=64.7

Q ss_pred             CHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHhCCCCccchhhhhcCHHHHH
Q 030634           31 DADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKH---YTLWSLGNAHTSCGFLTADLSEAKGDFDKAS  107 (174)
Q Consensus        31 ~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~---~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai  107 (174)
                      .+.-|++-|...+..|++          ++|+..|+++....|..+   .+...++.++++-|           +|++|+
T Consensus        33 p~~~LY~~g~~~L~~gn~----------~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~-----------~y~~A~   91 (254)
T COG4105          33 PASELYNEGLTELQKGNY----------EEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNG-----------EYDLAL   91 (254)
T ss_pred             CHHHHHHHHHHHHhcCCH----------HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcc-----------cHHHHH
Confidence            577899999999999999          999999999999988876   57889999999988           999999


Q ss_pred             HHHHHHHHhCCCCH
Q 030634          108 ECFQRAVDEEPTNE  121 (174)
Q Consensus       108 ~~~~kAl~l~P~~~  121 (174)
                      ...++=+++.|+++
T Consensus        92 ~~~drFi~lyP~~~  105 (254)
T COG4105          92 AYIDRFIRLYPTHP  105 (254)
T ss_pred             HHHHHHHHhCCCCC
Confidence            99999999999988

>PLN03077 Protein ECB2; Provisional

Probab=96.84  E-value=0.0095  Score=56.54  Aligned_cols=53  Identities=13%  Similarity=0.157  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHH----hCCCCH
Q 030634           58 INEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVD----EEPTNE  121 (174)
Q Consensus        58 ~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~----l~P~~~  121 (174)
                      .+.+....+++++++|+++..|..|+++|...|           ++++|.+..+..-+    .+|+..
T Consensus       673 ~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g-----------~~~~a~~vr~~M~~~g~~k~~g~s  729 (857)
T PLN03077        673 VELGELAAQHIFELDPNSVGYYILLCNLYADAG-----------KWDEVARVRKTMRENGLTVDPGCS  729 (857)
T ss_pred             hHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCC-----------ChHHHHHHHHHHHHcCCCCCCCcc
Confidence            378888899999999999999999999999999           99999998877654    456544

>PLN03218 maturation of RBCL 1; Provisional

Probab=96.83  E-value=0.046  Score=53.61  Aligned_cols=51  Identities=14%  Similarity=0.149  Sum_probs=30.3

Q ss_pred             HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHh--CCCC
Q 030634           59 NEAISKFEEALVID-PAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDE--EPTN  120 (174)
Q Consensus        59 ~eAi~~lekAl~ld-P~~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l--~P~~  120 (174)
                      ++|++.|++..+.+ +.+...|..+..+|.+.|           ++++|+..|++..+.  .|+.
T Consensus       596 deA~elf~~M~e~gi~p~~~tynsLI~ay~k~G-----------~~deAl~lf~eM~~~Gv~PD~  649 (1060)
T PLN03218        596 DRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKG-----------DWDFALSIYDDMKKKGVKPDE  649 (1060)
T ss_pred             HHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHHcCCCCCH
Confidence            66666666665554 334555556666666655           666666666666654  4553

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.81  E-value=0.0021  Score=36.95  Aligned_cols=32  Identities=28%  Similarity=0.557  Sum_probs=25.5

Q ss_pred             HHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHh--CCCC
Q 030634           34 NLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVI--DPAK   75 (174)
Q Consensus        34 a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~l--dP~~   75 (174)
                      +|.++|.++..+|++          ++|+++|+++|.+  +|.+
T Consensus         1 al~~Lg~~~~~~g~~----------~~Ai~~y~~aL~l~~~~~~   34 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDY----------EKAIEYYEQALALARDPED   34 (36)
T ss_dssp             HHHHHHHHHHHCT-H----------HHHHHHHHHHHHHHHHCT-
T ss_pred             CHHHHHHHHHHcCCH----------HHHHHHHHHHHHhcccccC
Confidence            578999999999999          9999999996644  5543

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=96.81  E-value=0.0087  Score=53.52  Aligned_cols=89  Identities=24%  Similarity=0.233  Sum_probs=76.9

Q ss_pred             hhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHH
Q 030634           12 LLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPA----KHYTLWSLGNAHT   87 (174)
Q Consensus        12 ~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~----~~~a~~~LG~a~~   87 (174)
                      ...+.|.+.........|+.+-.++..|+++...|+.          ++|+..|++++.....    ..-.++.+|.++.
T Consensus       247 ~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~----------~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~  316 (468)
T PF10300_consen  247 VPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNL----------EEAIESFERAIESQSEWKQLHHLCYFELAWCHM  316 (468)
T ss_pred             CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCH----------HHHHHHHHHhccchhhHHhHHHHHHHHHHHHHH
Confidence            3567889999999999999999999999999999998          9999999999854333    3346789999999


Q ss_pred             hCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634           88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (174)
Q Consensus        88 ~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~  121 (174)
                      .++           +|++|.++|.+.++.+.-+.
T Consensus       317 ~~~-----------~w~~A~~~f~~L~~~s~WSk  339 (468)
T PF10300_consen  317 FQH-----------DWEEAAEYFLRLLKESKWSK  339 (468)
T ss_pred             HHc-----------hHHHHHHHHHHHHhccccHH
Confidence            988           99999999999999876554

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=96.79  E-value=0.015  Score=42.29  Aligned_cols=99  Identities=15%  Similarity=0.118  Sum_probs=77.2

Q ss_pred             hHHhhhhHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHhcCcccchhh-hhhHHHHHHHHHHHHHhCCCCHHHHHHH
Q 030634            7 DFDRLLLSEHNRKTAEANYAKDPLDA---DNLTRWGEALLELSQFESVSDS-KKIINEAISKFEEALVIDPAKHYTLWSL   82 (174)
Q Consensus         7 ~~~~~~~~~eAl~~~~~al~~~P~~~---~a~~~lg~~l~~~g~~~~~~~~-~~~~~eAi~~lekAl~ldP~~~~a~~~L   82 (174)
                      ++=+.|.+-+|++..+..+..++++.   ..+..-|.++..++.--+..+. ..-...++++|.++..+.|..+..++.|
T Consensus         5 ~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L~~l   84 (111)
T PF04781_consen    5 DYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSLFEL   84 (111)
T ss_pred             HHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHHHHH
Confidence            45577889999999999999999987   4556668888776654222222 2345789999999999999999999999


Q ss_pred             HHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHh
Q 030634           83 GNAHTSCGFLTADLSEAKGDFDKASECFQRAVDE  116 (174)
Q Consensus        83 G~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l  116 (174)
                      |.=+-.--           .|++++.-.+++|.+
T Consensus        85 a~~l~s~~-----------~Ykk~v~kak~~Lsv  107 (111)
T PF04781_consen   85 ASQLGSVK-----------YYKKAVKKAKRGLSV  107 (111)
T ss_pred             HHHhhhHH-----------HHHHHHHHHHHHhcc
Confidence            88765533           789999988888865

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=96.79  E-value=0.0042  Score=53.12  Aligned_cols=52  Identities=25%  Similarity=0.494  Sum_probs=49.5

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634           59 NEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (174)
Q Consensus        59 ~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~  121 (174)
                      ++|...|+.|++++|++++++..+|.....-.           +.-+|-.||-+||.++|.|.
T Consensus       133 ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~-----------~iv~ADq~Y~~ALtisP~ns  184 (472)
T KOG3824|consen  133 EKAMTLFEHALALAPTNPQILIEMGQFREMHN-----------EIVEADQCYVKALTISPGNS  184 (472)
T ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhh-----------hhHhhhhhhheeeeeCCCch
Confidence            99999999999999999999999999987766           89999999999999999998

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.78  E-value=0.013  Score=53.55  Aligned_cols=83  Identities=22%  Similarity=0.281  Sum_probs=60.9

Q ss_pred             hhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHh------------------
Q 030634           10 RLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVI------------------   71 (174)
Q Consensus        10 ~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~l------------------   71 (174)
                      |++..++|++.+.   -.++.+..++...|.+++.+|+|          ++|+.+|+..++-                  
T Consensus        91 rlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~y----------dealdiY~~L~kn~~dd~d~~~r~nl~a~~a  157 (652)
T KOG2376|consen   91 RLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERY----------DEALDIYQHLAKNNSDDQDEERRANLLAVAA  157 (652)
T ss_pred             HcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhH----------HHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence            6777888888877   56777788888889888888888          5555555555333                  


Q ss_pred             ------------CCC-CHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHh
Q 030634           72 ------------DPA-KHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDE  116 (174)
Q Consensus        72 ------------dP~-~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l  116 (174)
                                  .|. +.+.+||.+.++...|           +|.+|++.+++|+++
T Consensus       158 ~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~g-----------ky~qA~elL~kA~~~  204 (652)
T KOG2376|consen  158 ALQVQLLQSVPEVPEDSYELLYNTACILIENG-----------KYNQAIELLEKALRI  204 (652)
T ss_pred             hhhHHHHHhccCCCcchHHHHHHHHHHHHhcc-----------cHHHHHHHHHHHHHH
Confidence                        333 4456778888888877           999999999998543

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.78  E-value=0.014  Score=48.99  Aligned_cols=100  Identities=13%  Similarity=0.134  Sum_probs=82.3

Q ss_pred             hhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcCcccch---h---------------------------hhhhHH
Q 030634           11 LLLSEHNRKTAEANYAKD-PLDADNLTRWGEALLELSQFESVS---D---------------------------SKKIIN   59 (174)
Q Consensus        11 ~~~~~eAl~~~~~al~~~-P~~~~a~~~lg~~l~~~g~~~~~~---~---------------------------~~~~~~   59 (174)
                      ++.|-=.+..+.+.++.+ |.+|.....+|.+-++.|+.+...   +                           -.+.+-
T Consensus       190 ~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a  269 (366)
T KOG2796|consen  190 MKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFA  269 (366)
T ss_pred             chhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchH
Confidence            345666778888999988 779999999999999988864211   0                           023467


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634           60 EAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (174)
Q Consensus        60 eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~  121 (174)
                      +|...|.+++..||.++.+-.+-+.|+..+|           +..+|++-...++++.|...
T Consensus       270 ~a~r~~~~i~~~D~~~~~a~NnKALcllYlg-----------~l~DAiK~~e~~~~~~P~~~  320 (366)
T KOG2796|consen  270 EAHRFFTEILRMDPRNAVANNNKALCLLYLG-----------KLKDALKQLEAMVQQDPRHY  320 (366)
T ss_pred             HHHHHHhhccccCCCchhhhchHHHHHHHHH-----------HHHHHHHHHHHHhccCCccc
Confidence            8888899999999999999999999999988           99999999999999999876

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.78  E-value=0.034  Score=46.45  Aligned_cols=111  Identities=19%  Similarity=0.216  Sum_probs=83.0

Q ss_pred             HHhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 030634            8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT   87 (174)
Q Consensus         8 ~~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~   87 (174)
                      +-++-+++-|.+..++..+++-  -.++..||.++..+---      .+.+.+|.-+|++--+.-|-.+......+.|+.
T Consensus       147 ~lk~~r~d~A~~~lk~mq~ide--d~tLtQLA~awv~la~g------gek~qdAfyifeE~s~k~~~T~~llnG~Av~~l  218 (299)
T KOG3081|consen  147 LLKMHRFDLAEKELKKMQQIDE--DATLTQLAQAWVKLATG------GEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHL  218 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHccch--HHHHHHHHHHHHHHhcc------chhhhhHHHHHHHHhcccCCChHHHccHHHHHH
Confidence            3466777778777777766554  44566677766654221      233599999999999988889999999999999


Q ss_pred             hCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCHHHHHHHhcCCCChHHHHHHHHHHHhcccc
Q 030634           88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLEVSTKAPELHMELHKHGINQQTL  150 (174)
Q Consensus        88 ~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~~y~~Al~l~~~~~~~~~~l~~~~~~~~~~  150 (174)
                      .+|           +|++|...++.||..+|++             |++..|+.++-.-+|..
T Consensus       219 ~~~-----------~~eeAe~lL~eaL~kd~~d-------------petL~Nliv~a~~~Gkd  257 (299)
T KOG3081|consen  219 QLG-----------RYEEAESLLEEALDKDAKD-------------PETLANLIVLALHLGKD  257 (299)
T ss_pred             Hhc-----------CHHHHHHHHHHHHhccCCC-------------HHHHHHHHHHHHHhCCC
Confidence            998           9999999888877766654             77777777777666654

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=96.73  E-value=0.0033  Score=53.74  Aligned_cols=69  Identities=19%  Similarity=0.095  Sum_probs=60.4

Q ss_pred             hHHhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 030634            7 DFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNA   85 (174)
Q Consensus         7 ~~~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a   85 (174)
                      +-.+.|..++|.++++.|+.++|.+++++...|.....-++.          -+|=.+|-+||.++|.+.+|+.|....
T Consensus       125 ~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~i----------v~ADq~Y~~ALtisP~nseALvnR~RT  193 (472)
T KOG3824|consen  125 RSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEI----------VEADQCYVKALTISPGNSEALVNRART  193 (472)
T ss_pred             HHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhh----------HhhhhhhheeeeeCCCchHHHhhhhcc
Confidence            345778999999999999999999999999999887665554          899999999999999999999887654

>PRK10941 hypothetical protein; Provisional

Probab=96.71  E-value=0.015  Score=48.55  Aligned_cols=66  Identities=23%  Similarity=0.214  Sum_probs=58.5

Q ss_pred             HHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHH
Q 030634           35 LTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAV  114 (174)
Q Consensus        35 ~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl  114 (174)
                      +.++=.++...+++          +.|+.+.+..+.++|+++.-+-..|.+|..+|           .+..|..-++.-+
T Consensus       184 l~nLK~~~~~~~~~----------~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~-----------c~~~A~~DL~~fl  242 (269)
T PRK10941        184 LDTLKAALMEEKQM----------ELALRASEALLQFDPEDPYEIRDRGLIYAQLD-----------CEHVALSDLSYFV  242 (269)
T ss_pred             HHHHHHHHHHcCcH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-----------CcHHHHHHHHHHH
Confidence            34555566677777          99999999999999999999999999999999           9999999999988


Q ss_pred             HhCCCCH
Q 030634          115 DEEPTNE  121 (174)
Q Consensus       115 ~l~P~~~  121 (174)
                      +.-|+++
T Consensus       243 ~~~P~dp  249 (269)
T PRK10941        243 EQCPEDP  249 (269)
T ss_pred             HhCCCch
Confidence            8888887

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=96.69  E-value=0.0088  Score=37.78  Aligned_cols=42  Identities=17%  Similarity=0.124  Sum_probs=35.1

Q ss_pred             HHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 030634           33 DNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGN   84 (174)
Q Consensus        33 ~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~   84 (174)
                      +.++.+|..+..+|++          ++|....+.+|+++|+|..+.-....
T Consensus         2 d~lY~lAig~ykl~~Y----------~~A~~~~~~lL~~eP~N~Qa~~L~~~   43 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEY----------EKARRYCDALLEIEPDNRQAQSLKEL   43 (53)
T ss_dssp             HHHHHHHHHHHHTT-H----------HHHHHHHHHHHHHTTS-HHHHHHHHH
T ss_pred             hhHHHHHHHHHHhhhH----------HHHHHHHHHHHhhCCCcHHHHHHHHH
Confidence            5788999999999999          99999999999999999997654433

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=96.66  E-value=0.0042  Score=55.20  Aligned_cols=81  Identities=16%  Similarity=0.210  Sum_probs=69.8

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH--------------H-
Q 030634           58 INEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE--------------L-  122 (174)
Q Consensus        58 ~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~--------------~-  122 (174)
                      ++.|+..|.|||+++|+++..+-+.+.++.+.+           +|..|+.-+.+|++++|...              + 
T Consensus        20 fd~avdlysKaI~ldpnca~~~anRa~a~lK~e-----------~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~   88 (476)
T KOG0376|consen   20 FDVAVDLYSKAIELDPNCAIYFANRALAHLKVE-----------SFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEF   88 (476)
T ss_pred             HHHHHHHHHHHHhcCCcceeeechhhhhheeec-----------hhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHH
Confidence            499999999999999999999999999999988           99999999999999999987              3 


Q ss_pred             ------HHHHHhcCCCChHHHHHHHHHHHhccc
Q 030634          123 ------YQKSLEVSTKAPELHMELHKHGINQQT  149 (174)
Q Consensus       123 ------y~~Al~l~~~~~~~~~~l~~~~~~~~~  149 (174)
                            +++...+.|..+.+.-.+..+-....+
T Consensus        89 ~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~  121 (476)
T KOG0376|consen   89 KKALLDLEKVKKLAPNDPDATRKIDECNKIVSE  121 (476)
T ss_pred             HHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHH
Confidence                  344447889999888777776655544

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.58  E-value=0.064  Score=45.89  Aligned_cols=71  Identities=13%  Similarity=0.085  Sum_probs=62.7

Q ss_pred             hhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhC
Q 030634           10 RLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSC   89 (174)
Q Consensus        10 ~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~l   89 (174)
                      +-.+|+.|++...--.+.+|.+-..+..+|.||....+|          .+|..||++.-.+.|+.....+.-+..++..
T Consensus        22 ~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f----------~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A   91 (459)
T KOG4340|consen   22 RDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEF----------ALAAECYEQLGQLHPELEQYRLYQAQSLYKA   91 (459)
T ss_pred             HHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHH----------HHHHHHHHHHHhhChHHHHHHHHHHHHHHHh
Confidence            335899999999999999999999999999999999998          9999999999999999888776666666665


Q ss_pred             C
Q 030634           90 G   90 (174)
Q Consensus        90 G   90 (174)
                      +
T Consensus        92 ~   92 (459)
T KOG4340|consen   92 C   92 (459)
T ss_pred             c
Confidence            5

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=96.52  E-value=0.036  Score=48.38  Aligned_cols=109  Identities=17%  Similarity=0.170  Sum_probs=74.0

Q ss_pred             hhhHHHHHHHHHH-HHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhC
Q 030634           11 LLLSEHNRKTAEA-NYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSC   89 (174)
Q Consensus        11 ~~~~~eAl~~~~~-al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~l   89 (174)
                      .|..++|+..... .....+.+++.+..+|.+|-.+-.-.+ .......++||..|+++.+++|+.... .|++.++...
T Consensus       195 ~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~-~~d~~~ldkAi~~Y~kgFe~~~~~Y~G-IN~AtLL~~~  272 (374)
T PF13281_consen  195 PGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESN-FTDRESLDKAIEWYRKGFEIEPDYYSG-INAATLLMLA  272 (374)
T ss_pred             CCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcC-ccchHHHHHHHHHHHHHHcCCccccch-HHHHHHHHHc
Confidence            6778999999999 555678899999999999976522111 112334799999999999999764332 4555555555


Q ss_pred             CC------------------------Cc-----------cchhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634           90 GF------------------------LT-----------ADLSEAKGDFDKASECFQRAVDEEPTNE  121 (174)
Q Consensus        90 G~------------------------~~-----------~~~~~a~~~~~~Ai~~~~kAl~l~P~~~  121 (174)
                      |.                        +.           .+.....+++++|+++++++++++|...
T Consensus       273 g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W  339 (374)
T PF13281_consen  273 GHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW  339 (374)
T ss_pred             CCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence            51                        10           1112236677888887777777766544

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.49  E-value=0.021  Score=47.46  Aligned_cols=69  Identities=22%  Similarity=0.320  Sum_probs=53.9

Q ss_pred             HHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHH--------hCCCCHH----------HHHHHHHHHHhCCCCc
Q 030634           32 ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALV--------IDPAKHY----------TLWSLGNAHTSCGFLT   93 (174)
Q Consensus        32 ~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~--------ldP~~~~----------a~~~LG~a~~~lG~~~   93 (174)
                      ..++...|+-++..|++          ++|..+|+.|+-        -.|.+++          .+.|.+.|+...|   
T Consensus       178 v~~l~q~GN~lfk~~~y----------kEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~---  244 (329)
T KOG0545|consen  178 VPVLHQEGNRLFKLGRY----------KEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKE---  244 (329)
T ss_pred             hHHHHHhhhhhhhhccH----------HHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHH---
Confidence            34667778888888888          777777766643        3566555          4578888888877   


Q ss_pred             cchhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634           94 ADLSEAKGDFDKASECFQRAVDEEPTNE  121 (174)
Q Consensus        94 ~~~~~a~~~~~~Ai~~~~kAl~l~P~~~  121 (174)
                              +|-+++++....|..+|+|.
T Consensus       245 --------e~yevleh~seiL~~~~~nv  264 (329)
T KOG0545|consen  245 --------EYYEVLEHCSEILRHHPGNV  264 (329)
T ss_pred             --------HHHHHHHHHHHHHhcCCchH
Confidence                    99999999999999999998

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.48  E-value=0.02  Score=48.97  Aligned_cols=74  Identities=22%  Similarity=0.310  Sum_probs=62.9

Q ss_pred             HHHHhhCC--CCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCccchhhh
Q 030634           22 EANYAKDP--LDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEA   99 (174)
Q Consensus        22 ~~al~~~P--~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~~~~~~~~a   99 (174)
                      +-.++.-|  ++++...+.|.++.+-|++          ++|++.|+.|++..--++..-|+++.+++..|         
T Consensus       132 rsLveQlp~en~Ad~~in~gCllykegqy----------EaAvqkFqaAlqvsGyqpllAYniALaHy~~~---------  192 (459)
T KOG4340|consen  132 RSLVEQLPSENEADGQINLGCLLYKEGQY----------EAAVQKFQAALQVSGYQPLLAYNLALAHYSSR---------  192 (459)
T ss_pred             HHHHHhccCCCccchhccchheeeccccH----------HHHHHHHHHHHhhcCCCchhHHHHHHHHHhhh---------
Confidence            34445556  5788888888888888888          99999999999999999999999999999988         


Q ss_pred             hcCHHHHHHHHHHHHHh
Q 030634          100 KGDFDKASECFQRAVDE  116 (174)
Q Consensus       100 ~~~~~~Ai~~~~kAl~l  116 (174)
                        +++.|+++....++.
T Consensus       193 --qyasALk~iSEIieR  207 (459)
T KOG4340|consen  193 --QYASALKHISEIIER  207 (459)
T ss_pred             --hHHHHHHHHHHHHHh
Confidence              999999887776654

>PRK10941 hypothetical protein; Provisional

Probab=96.46  E-value=0.017  Score=48.14  Aligned_cols=69  Identities=16%  Similarity=0.055  Sum_probs=62.4

Q ss_pred             hhHHhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 030634            6 SDFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGN   84 (174)
Q Consensus         6 ~~~~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~   84 (174)
                      +-|-+.++++.|++..+..+.++|+++.-+--.|.++.++|.+          ..|+.-++.-++.-|+++.+-...-.
T Consensus       189 ~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~----------~~A~~DL~~fl~~~P~dp~a~~ik~q  257 (269)
T PRK10941        189 AALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCE----------HVALSDLSYFVEQCPEDPISEMIRAQ  257 (269)
T ss_pred             HHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCc----------HHHHHHHHHHHHhCCCchhHHHHHHH
Confidence            3467788999999999999999999999999999999999999          99999999999999999998654433

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=96.39  E-value=0.0051  Score=50.49  Aligned_cols=52  Identities=21%  Similarity=0.475  Sum_probs=50.3

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634           59 NEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (174)
Q Consensus        59 ~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~  121 (174)
                      +-|.+.|.+++++-|+....|+.+|....+.|           +++.|...|++.+++||++.
T Consensus        12 ~aaaely~qal~lap~w~~gwfR~g~~~ekag-----------~~daAa~a~~~~L~ldp~D~   63 (287)
T COG4976          12 EAAAELYNQALELAPEWAAGWFRLGEYTEKAG-----------EFDAAAAAYEEVLELDPEDH   63 (287)
T ss_pred             HHHHHHHHHHhhcCchhhhhhhhcchhhhhcc-----------cHHHHHHHHHHHHcCCcccc
Confidence            88999999999999999999999999999999           99999999999999999887

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=96.38  E-value=0.018  Score=42.61  Aligned_cols=53  Identities=19%  Similarity=0.093  Sum_probs=45.0

Q ss_pred             HHhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHH
Q 030634            8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALV   70 (174)
Q Consensus         8 ~~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~   70 (174)
                      +...+.+++|+..+++++..+|.+..++..+-.++...|+.          .+|+..|++..+
T Consensus        72 ~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~----------~~A~~~Y~~~~~  124 (146)
T PF03704_consen   72 LLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRR----------AEALRVYERYRR  124 (146)
T ss_dssp             HHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-H----------HHHHHHHHHHHH
T ss_pred             HHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCH----------HHHHHHHHHHHH
Confidence            45678999999999999999999999999999999999999          888888887644

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=96.37  E-value=0.021  Score=49.79  Aligned_cols=91  Identities=23%  Similarity=0.183  Sum_probs=63.2

Q ss_pred             HHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHhCCCCccchhhhhcCHHHH
Q 030634           33 DNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHY------TLWSLGNAHTSCGFLTADLSEAKGDFDKA  106 (174)
Q Consensus        33 ~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~------a~~~LG~a~~~lG~~~~~~~~a~~~~~~A  106 (174)
                      .....+|+++..++.|          +++++.|++|+++.-++.+      ++..||..+..+.           ++++|
T Consensus       123 q~~l~~~~Ahlgls~f----------q~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~-----------D~~Ka  181 (518)
T KOG1941|consen  123 QVSLSMGNAHLGLSVF----------QKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLK-----------DYEKA  181 (518)
T ss_pred             hhhhhHHHHhhhHHHH----------HHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHH-----------hhhHH
Confidence            3455566666666666          8888888888887444333      4667888888876           88888


Q ss_pred             HHHHHHHHHhCCCCH------HHHHHHhcCCCChHHHHHHHHHHHhccccCCC
Q 030634          107 SECFQRAVDEEPTNE------LYQKSLEVSTKAPELHMELHKHGINQQTLGGG  153 (174)
Q Consensus       107 i~~~~kAl~l~P~~~------~y~~Al~l~~~~~~~~~~l~~~~~~~~~~~~~  153 (174)
                      +.+..+|.++--+..      .|+.+         ..+.|++.+..+|++|.+
T Consensus       182 l~f~~kA~~lv~s~~l~d~~~kyr~~---------~lyhmaValR~~G~LgdA  225 (518)
T KOG1941|consen  182 LFFPCKAAELVNSYGLKDWSLKYRAM---------SLYHMAVALRLLGRLGDA  225 (518)
T ss_pred             hhhhHhHHHHHHhcCcCchhHHHHHH---------HHHHHHHHHHHhcccccH
Confidence            888888887754332      33332         346788888888888654

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=96.33  E-value=0.011  Score=33.86  Aligned_cols=30  Identities=27%  Similarity=0.359  Sum_probs=26.0

Q ss_pred             HHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHh
Q 030634           76 HYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDE  116 (174)
Q Consensus        76 ~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l  116 (174)
                      ..++.+||.+|..+|           ++++|+.++++++++
T Consensus         2 a~~~~~la~~~~~~g-----------~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    2 ASALNNLANAYRAQG-----------RYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHHCT------------HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhh-----------hcchhhHHHHHHHHH
Confidence            357889999999999           999999999999875

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=96.33  E-value=0.068  Score=39.76  Aligned_cols=90  Identities=16%  Similarity=0.100  Sum_probs=62.4

Q ss_pred             hhHHHHHHHHHHHHhhCCC------------CHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHH
Q 030634           12 LLSEHNRKTAEANYAKDPL------------DADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTL   79 (174)
Q Consensus        12 ~~~~eAl~~~~~al~~~P~------------~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~   79 (174)
                      +.|++|...+++|++..-.            |+-++..|+.++..+|+|++.+   -.-+.|+..|.+==+++.+....|
T Consensus        23 g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L---~sA~~aL~YFNRRGEL~qdeGklW   99 (144)
T PF12968_consen   23 GAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECL---QSADRALRYFNRRGELHQDEGKLW   99 (144)
T ss_dssp             T-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHH---HHHHHHHHHHHHH--TTSTHHHHH
T ss_pred             hhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHH---HHHHHHHHHHhhccccccccchhH
Confidence            4899999999999986322            4557788899999999993221   111444445554446677776655


Q ss_pred             ----HHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHH
Q 030634           80 ----WSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVD  115 (174)
Q Consensus        80 ----~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~  115 (174)
                          ++.+.++..+|           +.++|+..|+++-+
T Consensus       100 IaaVfsra~Al~~~G-----------r~~eA~~~fr~agE  128 (144)
T PF12968_consen  100 IAAVFSRAVALEGLG-----------RKEEALKEFRMAGE  128 (144)
T ss_dssp             HHHHHHHHHHHHHTT------------HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcC-----------ChHHHHHHHHHHHH
Confidence                67899999998           99999999999865

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=96.30  E-value=0.076  Score=50.55  Aligned_cols=92  Identities=21%  Similarity=0.161  Sum_probs=76.7

Q ss_pred             HhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 030634            9 DRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTS   88 (174)
Q Consensus         9 ~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~   88 (174)
                      .|+|+.++|..+++.....-|+|-..+-.+-.+|..++++          ++|+.+|+++++.+|+ -+-.+.+=++|.+
T Consensus        54 ~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~----------d~~~~~Ye~~~~~~P~-eell~~lFmayvR  122 (932)
T KOG2053|consen   54 FRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKL----------DEAVHLYERANQKYPS-EELLYHLFMAYVR  122 (932)
T ss_pred             HHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhh----------hHHHHHHHHHHhhCCc-HHHHHHHHHHHHH
Confidence            5899999999888888888899999999999999999999          9999999999999999 8888888888888


Q ss_pred             CCCCccchhhhhcCHHHHHHHHHHHHHhCCCCHH
Q 030634           89 CGFLTADLSEAKGDFDKASECFQRAVDEEPTNEL  122 (174)
Q Consensus        89 lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~~  122 (174)
                      -+           +|.+=-+.--+.-+.-|+++.
T Consensus       123 ~~-----------~yk~qQkaa~~LyK~~pk~~y  145 (932)
T KOG2053|consen  123 EK-----------SYKKQQKAALQLYKNFPKRAY  145 (932)
T ss_pred             HH-----------HHHHHHHHHHHHHHhCCcccc
Confidence            66           776544444444446888883

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=96.20  E-value=0.039  Score=50.18  Aligned_cols=91  Identities=15%  Similarity=0.060  Sum_probs=79.8

Q ss_pred             hHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCC
Q 030634           13 LSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFL   92 (174)
Q Consensus        13 ~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~~   92 (174)
                      ....|+..|.+++..-|.....+.+.+.++++-+-.       +..-.|+.--..|+++||....+|+.|+.++..++  
T Consensus       389 ~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~-------~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~--  459 (758)
T KOG1310|consen  389 IVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWR-------GDSYLALRDCHVALRLNPSIQKAHFRLARALNELT--  459 (758)
T ss_pred             HHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhcc-------ccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHh--
Confidence            456788999999999999999999999999886554       23367888888999999999999999999999999  


Q ss_pred             ccchhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634           93 TADLSEAKGDFDKASECFQRAVDEEPTNE  121 (174)
Q Consensus        93 ~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~  121 (174)
                               ++.+|+++-..+....|.+.
T Consensus       460 ---------r~~eal~~~~alq~~~Ptd~  479 (758)
T KOG1310|consen  460 ---------RYLEALSCHWALQMSFPTDV  479 (758)
T ss_pred             ---------hHHHhhhhHHHHhhcCchhh
Confidence                     99999999999999999666

>PRK04841 transcriptional regulator MalT; Provisional

Probab=96.15  E-value=0.038  Score=52.30  Aligned_cols=87  Identities=16%  Similarity=0.084  Sum_probs=69.8

Q ss_pred             HhhhhHHHHHHHHHHHHhhCCCCH-----HHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCC------HH
Q 030634            9 DRLLLSEHNRKTAEANYAKDPLDA-----DNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAK------HY   77 (174)
Q Consensus         9 ~~~~~~~eAl~~~~~al~~~P~~~-----~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~------~~   77 (174)
                      -..+.+++|...+++++...|...     .++..+|.++...|++          ++|...+++++......      ..
T Consensus       463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~----------~~A~~~~~~al~~~~~~g~~~~~~~  532 (903)
T PRK04841        463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGEL----------ARALAMMQQTEQMARQHDVYHYALW  532 (903)
T ss_pred             HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHHhhhcchHHHHH
Confidence            456789999999999998655432     3567788888888888          99999999999764331      23


Q ss_pred             HHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHh
Q 030634           78 TLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDE  116 (174)
Q Consensus        78 a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l  116 (174)
                      ++.++|.++...|           ++++|..++++++++
T Consensus       533 ~~~~la~~~~~~G-----------~~~~A~~~~~~al~~  560 (903)
T PRK04841        533 SLLQQSEILFAQG-----------FLQAAYETQEKAFQL  560 (903)
T ss_pred             HHHHHHHHHHHCC-----------CHHHHHHHHHHHHHH
Confidence            5678899999999           999999999999886

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.10  E-value=0.076  Score=44.67  Aligned_cols=110  Identities=13%  Similarity=0.142  Sum_probs=82.5

Q ss_pred             HHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHH
Q 030634           36 TRWGEALLELSQFESVSDSKKIINEAISKFEEALVID-PAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAV  114 (174)
Q Consensus        36 ~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ld-P~~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl  114 (174)
                      +-+..++..+|+|          .-.+..+.+.++.+ |.++...-.||.+.+..|           +.+.|..+|++.-
T Consensus       181 y~~~~~llG~kEy----------~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~G-----------D~k~a~~yf~~ve  239 (366)
T KOG2796|consen  181 YSMANCLLGMKEY----------VLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIG-----------DIKTAEKYFQDVE  239 (366)
T ss_pred             HHHHHHHhcchhh----------hhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcc-----------cHHHHHHHHHHHH
Confidence            4455666667777          88899999999998 677777889999999999           9999999998443


Q ss_pred             H----hCCCCH-----------------------HHHHHHhcCCCChHHHHHHHHHHHhcccc--------------CCC
Q 030634          115 D----EEPTNE-----------------------LYQKSLEVSTKAPELHMELHKHGINQQTL--------------GGG  153 (174)
Q Consensus       115 ~----l~P~~~-----------------------~y~~Al~l~~~~~~~~~~l~~~~~~~~~~--------------~~~  153 (174)
                      +    ++-.-.                       .|.+.++.+|..|.+-.|=+-|++-.|++              .+.
T Consensus       240 k~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~  319 (366)
T KOG2796|consen  240 KVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH  319 (366)
T ss_pred             HHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence            2    221110                       56678899999999998888888877777              222


Q ss_pred             CchhhHHHHHHHH
Q 030634          154 SSASSAQVNFCIC  166 (174)
Q Consensus       154 ~~~~~~~~~~~~~  166 (174)
                      ----|+.+|+|-.
T Consensus       320 ~l~es~~~nL~tm  332 (366)
T KOG2796|consen  320 YLHESVLFNLTTM  332 (366)
T ss_pred             chhhhHHHHHHHH
Confidence            3345788888854

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=95.97  E-value=0.094  Score=43.64  Aligned_cols=92  Identities=22%  Similarity=0.228  Sum_probs=73.0

Q ss_pred             hhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHH
Q 030634           11 LLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKH---YTLWSLGNAHT   87 (174)
Q Consensus        11 ~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~---~a~~~LG~a~~   87 (174)
                      .+..+.|.+.++.+++..|.+++.|.....-++..++.          +.|..+|++++..-|...   ..|-....-=.
T Consensus        49 ~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~----------~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~  118 (280)
T PF05843_consen   49 NKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDI----------NNARALFERAISSLPKEKQSKKIWKKFIEFES  118 (280)
T ss_dssp             CS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H----------HHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcH----------HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHH
Confidence            45566699999999999999999999999999998887          999999999999877776   45555555555


Q ss_pred             hCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCHHH
Q 030634           88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELY  123 (174)
Q Consensus        88 ~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~~y  123 (174)
                      ..|           +.+.....++++.+.-|++..+
T Consensus       119 ~~G-----------dl~~v~~v~~R~~~~~~~~~~~  143 (280)
T PF05843_consen  119 KYG-----------DLESVRKVEKRAEELFPEDNSL  143 (280)
T ss_dssp             HHS------------HHHHHHHHHHHHHHTTTS-HH
T ss_pred             HcC-----------CHHHHHHHHHHHHHHhhhhhHH
Confidence            656           9999999999999999987633

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=95.95  E-value=0.011  Score=48.57  Aligned_cols=57  Identities=25%  Similarity=0.247  Sum_probs=52.9

Q ss_pred             hhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHH
Q 030634           12 LLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYT   78 (174)
Q Consensus        12 ~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a   78 (174)
                      +..+.|.+.+.+++.+.|.+...|+++|....+.|++          +.|...|++.+++||.+...
T Consensus         9 ~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~----------daAa~a~~~~L~ldp~D~~g   65 (287)
T COG4976           9 GDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEF----------DAAAAAYEEVLELDPEDHGG   65 (287)
T ss_pred             CChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccH----------HHHHHHHHHHHcCCcccccc
Confidence            4567889999999999999999999999999999998          99999999999999998763

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=95.94  E-value=0.11  Score=43.84  Aligned_cols=98  Identities=18%  Similarity=0.218  Sum_probs=74.3

Q ss_pred             CHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHH-
Q 030634           31 DADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASEC-  109 (174)
Q Consensus        31 ~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~-  109 (174)
                      ..+.-+.-+.-....|++          .+|...|..++..+|++.++...|+.+|...|           +.+.|... 
T Consensus       133 ~~e~~~~~~~~~~~~e~~----------~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g-----------~~e~A~~iL  191 (304)
T COG3118         133 EEEEALAEAKELIEAEDF----------GEAAPLLKQALQAAPENSEAKLLLAECLLAAG-----------DVEAAQAIL  191 (304)
T ss_pred             HHHHHHHHhhhhhhccch----------hhHHHHHHHHHHhCcccchHHHHHHHHHHHcC-----------ChHHHHHHH
Confidence            334444555566677777          99999999999999999999999999999999           44333332 


Q ss_pred             ---------------------HHHHHHhCCCCHHHHHHHhcCCCChHHHHHHHHHHHhcccc
Q 030634          110 ---------------------FQRAVDEEPTNELYQKSLEVSTKAPELHMELHKHGINQQTL  150 (174)
Q Consensus       110 ---------------------~~kAl~l~P~~~~y~~Al~l~~~~~~~~~~l~~~~~~~~~~  150 (174)
                                           +.++- --|+.......+.-+|++++....++..+.-.|+.
T Consensus       192 ~~lP~~~~~~~~~~l~a~i~ll~qaa-~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~  252 (304)
T COG3118         192 AALPLQAQDKAAHGLQAQIELLEQAA-ATPEIQDLQRRLAADPDDVEAALALADQLHLVGRN  252 (304)
T ss_pred             HhCcccchhhHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence                                 22221 23444577788899999999999999999988886

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=95.92  E-value=0.016  Score=52.12  Aligned_cols=86  Identities=20%  Similarity=0.117  Sum_probs=65.0

Q ss_pred             hhhHHHHHHHHHHH-HhhCCC--------CHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHH---------hC
Q 030634           11 LLLSEHNRKTAEAN-YAKDPL--------DADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALV---------ID   72 (174)
Q Consensus        11 ~~~~~eAl~~~~~a-l~~~P~--------~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~---------ld   72 (174)
                      +|.|..|.+.+... +...|.        .--.|+++|.+++.+|.+          .-++..|.+|++         +.
T Consensus       253 ~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y----------~~~~~~F~kAL~N~c~qL~~g~~  322 (696)
T KOG2471|consen  253 HGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCY----------QASSVLFLKALRNSCSQLRNGLK  322 (696)
T ss_pred             hcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhH----------HHHHHHHHHHHHHHHHHHhccCC
Confidence            45667776665432 334455        233578999999999999          889999999996         12


Q ss_pred             C---------CCHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhC
Q 030634           73 P---------AKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEE  117 (174)
Q Consensus        73 P---------~~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~  117 (174)
                      |         +.-++.||.|..|...|           +.-.|.+||.+++..-
T Consensus       323 ~~~~~tls~nks~eilYNcG~~~Lh~g-----------rPl~AfqCf~~av~vf  365 (696)
T KOG2471|consen  323 PAKTFTLSQNKSMEILYNCGLLYLHSG-----------RPLLAFQCFQKAVHVF  365 (696)
T ss_pred             CCcceehhcccchhhHHhhhHHHHhcC-----------CcHHHHHHHHHHHHHH
Confidence            2         35678999999999999           9999999999977643

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=95.85  E-value=0.08  Score=47.71  Aligned_cols=93  Identities=20%  Similarity=0.211  Sum_probs=68.6

Q ss_pred             hhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhC
Q 030634           10 RLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSC   89 (174)
Q Consensus        10 ~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~l   89 (174)
                      +++.|+...++|++-++-.|.+..+|...|..-..+|+.          +.|..+|+-|+.....+..-+.--  +|.. 
T Consensus       449 qL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~Lgdt----------dRaRaifelAi~qp~ldmpellwk--aYId-  515 (677)
T KOG1915|consen  449 QLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDT----------DRARAIFELAISQPALDMPELLWK--AYID-  515 (677)
T ss_pred             HHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhH----------HHHHHHHHHHhcCcccccHHHHHH--Hhhh-
Confidence            577888888888888888888888888888888888887          888888888887765544432221  2221 


Q ss_pred             CCCccchhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634           90 GFLTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (174)
Q Consensus        90 G~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~  121 (174)
                            .....+.+++|...|++.|+..+...
T Consensus       516 ------FEi~~~E~ekaR~LYerlL~rt~h~k  541 (677)
T KOG1915|consen  516 ------FEIEEGEFEKARALYERLLDRTQHVK  541 (677)
T ss_pred             ------hhhhcchHHHHHHHHHHHHHhcccch
Confidence                  11224589999999999998888766

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.74  E-value=0.069  Score=46.32  Aligned_cols=89  Identities=11%  Similarity=-0.020  Sum_probs=68.3

Q ss_pred             hhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHh-CCCCHHH---HHHHHHHHH
Q 030634           12 LLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVI-DPAKHYT---LWSLGNAHT   87 (174)
Q Consensus        12 ~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~l-dP~~~~a---~~~LG~a~~   87 (174)
                      |.+-+|.....+.++..|.|.-++-.--.+++.+|+.          ..-...+++++.. +|+-|-.   +-.++-.+.
T Consensus       117 g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~----------~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~  186 (491)
T KOG2610|consen  117 GKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQ----------IGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLE  186 (491)
T ss_pred             ccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccch----------hhhhhHHHHhccccCCCCcHHHHHHHHHHhhHH
Confidence            3556666777888888999988888888888888887          7777778888866 7776432   233445566


Q ss_pred             hCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634           88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (174)
Q Consensus        88 ~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~  121 (174)
                      .+|           -|++|.+..++++++||.+.
T Consensus       187 E~g-----------~y~dAEk~A~ralqiN~~D~  209 (491)
T KOG2610|consen  187 ECG-----------IYDDAEKQADRALQINRFDC  209 (491)
T ss_pred             Hhc-----------cchhHHHHHHhhccCCCcch
Confidence            777           88999999999999988887

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=95.73  E-value=0.0025  Score=54.68  Aligned_cols=53  Identities=15%  Similarity=0.165  Sum_probs=51.3

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634           58 INEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (174)
Q Consensus        58 ~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~  121 (174)
                      +++||+.|..+|+++|.....|-..+.++..++           ....|+.-+..|+++||+.+
T Consensus       130 ~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~-----------kp~~airD~d~A~ein~Dsa  182 (377)
T KOG1308|consen  130 FDTAIELFTSAIELNPPLAILYAKRASVFLKLK-----------KPNAAIRDCDFAIEINPDSA  182 (377)
T ss_pred             hhhhhcccccccccCCchhhhcccccceeeecc-----------CCchhhhhhhhhhccCcccc
Confidence            499999999999999999999999999999998           99999999999999999988

>PRK04841 transcriptional regulator MalT; Provisional

Probab=95.60  E-value=0.071  Score=50.51  Aligned_cols=90  Identities=16%  Similarity=0.013  Sum_probs=65.5

Q ss_pred             hhhHHHHHHHHHHHHhhCCCCHH----HHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhC------CCCHHHHH
Q 030634           11 LLLSEHNRKTAEANYAKDPLDAD----NLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVID------PAKHYTLW   80 (174)
Q Consensus        11 ~~~~~eAl~~~~~al~~~P~~~~----a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ld------P~~~~a~~   80 (174)
                      .|..++|...........+....    .+..+|.++...|++          ++|+..+++++...      +....++.
T Consensus       666 ~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~----------~~A~~~l~~al~~~~~~g~~~~~a~~~~  735 (903)
T PRK04841        666 TGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQF----------DEAEIILEELNENARSLRLMSDLNRNLI  735 (903)
T ss_pred             CCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHHHHhCchHHHHHHHH
Confidence            34555555555444332222221    256788899998888          99999999998862      23345788


Q ss_pred             HHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634           81 SLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (174)
Q Consensus        81 ~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~  121 (174)
                      .+|.++...|           +.++|..++.+|+++.....
T Consensus       736 ~la~a~~~~G-----------~~~~A~~~L~~Al~la~~~g  765 (903)
T PRK04841        736 LLNQLYWQQG-----------RKSEAQRVLLEALKLANRTG  765 (903)
T ss_pred             HHHHHHHHcC-----------CHHHHHHHHHHHHHHhCccc
Confidence            9999999999           99999999999999876654

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=95.58  E-value=0.14  Score=41.21  Aligned_cols=97  Identities=19%  Similarity=0.247  Sum_probs=69.5

Q ss_pred             hHHhhhhHHHHHHHHHHHHhh----C-CCC--HHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCC-----
Q 030634            7 DFDRLLLSEHNRKTAEANYAK----D-PLD--ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPA-----   74 (174)
Q Consensus         7 ~~~~~~~~~eAl~~~~~al~~----~-P~~--~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~-----   74 (174)
                      ||..--.+++|++.|..|+-.    . +..  +..+.++|.++..+|+.   ......+..|+..|+++++....     
T Consensus        86 ~~~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~---~~E~~fl~~Al~~y~~a~~~e~~~~~~~  162 (214)
T PF09986_consen   86 DFSGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDE---ENEKRFLRKALEFYEEAYENEDFPIEGM  162 (214)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCH---HHHHHHHHHHHHHHHHHHHhCcCCCCCc
Confidence            444445677888877777652    2 222  55667777777776663   22244568999999999976533     


Q ss_pred             -CHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhC
Q 030634           75 -KHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEE  117 (174)
Q Consensus        75 -~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~  117 (174)
                       .....|.+|.+...+|           ++++|+.+|.+.+..-
T Consensus       163 ~~~~l~YLigeL~rrlg-----------~~~eA~~~fs~vi~~~  195 (214)
T PF09986_consen  163 DEATLLYLIGELNRRLG-----------NYDEAKRWFSRVIGSK  195 (214)
T ss_pred             hHHHHHHHHHHHHHHhC-----------CHHHHHHHHHHHHcCC
Confidence             2467889999999999           9999999999988653

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=95.54  E-value=0.14  Score=39.62  Aligned_cols=70  Identities=14%  Similarity=-0.009  Sum_probs=64.1

Q ss_pred             hhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCC
Q 030634           11 LLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCG   90 (174)
Q Consensus        11 ~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG   90 (174)
                      .+..+++...+...--+.|+.++.-..-|.+++..|++          .+|+..|+.+..-.|..+.+--.++.|+..+|
T Consensus        23 ~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w----------~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~   92 (160)
T PF09613_consen   23 LGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDW----------DDALRLLRELEERAPGFPYAKALLALCLYALG   92 (160)
T ss_pred             cCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCH----------HHHHHHHHHHhccCCCChHHHHHHHHHHHHcC
Confidence            44677788888888889999999999999999999999          99999999999999999999999999999988

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=95.44  E-value=0.072  Score=38.75  Aligned_cols=74  Identities=15%  Similarity=0.115  Sum_probs=52.9

Q ss_pred             HHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHH
Q 030634           38 WGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHY---TLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAV  114 (174)
Q Consensus        38 lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~---a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl  114 (174)
                      ++..++..|++          -+|+++.+..+...+++..   .+..-|.++..++.-+.+..-..--+-.|+++|.++.
T Consensus         2 ~A~~~~~rGnh----------iKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~   71 (111)
T PF04781_consen    2 KAKDYFARGNH----------IKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAV   71 (111)
T ss_pred             hHHHHHHccCH----------HHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHh
Confidence            35566777777          9999999999999998884   4556688887766332222222223567888888888


Q ss_pred             HhCCCCH
Q 030634          115 DEEPTNE  121 (174)
Q Consensus       115 ~l~P~~~  121 (174)
                      .+.|+.+
T Consensus        72 ~Lsp~~A   78 (111)
T PF04781_consen   72 ELSPDSA   78 (111)
T ss_pred             ccChhHH
Confidence            8888875

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.43  E-value=0.17  Score=40.57  Aligned_cols=86  Identities=12%  Similarity=0.105  Sum_probs=61.2

Q ss_pred             hhHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHH
Q 030634           12 LLSEHNRKTAEANYAKDPLD---ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHY-TLWSLGNAHT   87 (174)
Q Consensus        12 ~~~~eAl~~~~~al~~~P~~---~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~-a~~~LG~a~~   87 (174)
                      +.|++|+..++.++....+.   +-+-.++|+++...|++          ++|+..+...-.  +.... .--..|.++.
T Consensus       103 ~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~----------D~AL~~L~t~~~--~~w~~~~~elrGDill  170 (207)
T COG2976         103 NNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKA----------DAALKTLDTIKE--ESWAAIVAELRGDILL  170 (207)
T ss_pred             ccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhH----------HHHHHHHhcccc--ccHHHHHHHHhhhHHH
Confidence            56777877777776543221   34567889999998888          888887765322  22222 2345788998


Q ss_pred             hCCCCccchhhhhcCHHHHHHHHHHHHHhCCCC
Q 030634           88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTN  120 (174)
Q Consensus        88 ~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~  120 (174)
                      ..|           +-++|...|++|++.+++.
T Consensus       171 ~kg-----------~k~~Ar~ay~kAl~~~~s~  192 (207)
T COG2976         171 AKG-----------DKQEARAAYEKALESDASP  192 (207)
T ss_pred             HcC-----------chHHHHHHHHHHHHccCCh
Confidence            888           9999999999999998544

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=95.43  E-value=0.034  Score=31.77  Aligned_cols=30  Identities=33%  Similarity=0.437  Sum_probs=26.2

Q ss_pred             HHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHh
Q 030634           32 ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVI   71 (174)
Q Consensus        32 ~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~l   71 (174)
                      +.++.++|.++...|++          ++|+.++++++++
T Consensus         2 a~~~~~la~~~~~~g~~----------~~A~~~~~~al~~   31 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRY----------EEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHHCT-H----------HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhc----------chhhHHHHHHHHH
Confidence            46789999999999999          9999999999876

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=95.34  E-value=0.048  Score=46.92  Aligned_cols=69  Identities=19%  Similarity=0.242  Sum_probs=58.6

Q ss_pred             HHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHhCCCCccchhhhhcCHHHHH
Q 030634           32 ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHY----TLWSLGNAHTSCGFLTADLSEAKGDFDKAS  107 (174)
Q Consensus        32 ~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~----a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai  107 (174)
                      ++.+-.-|+-|+..++|          ..|+.+|.++|+..-.|++    .|.|.+-|...+|           +|..|+
T Consensus        81 Aen~KeeGN~~fK~Kry----------k~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~-----------NyRs~l  139 (390)
T KOG0551|consen   81 AENYKEEGNEYFKEKRY----------KDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLG-----------NYRSAL  139 (390)
T ss_pred             HHHHHHHhHHHHHhhhH----------HHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHH-----------HHHHHH
Confidence            44555568888888888          9999999999998555443    4789999999988           999999


Q ss_pred             HHHHHHHHhCCCCH
Q 030634          108 ECFQRAVDEEPTNE  121 (174)
Q Consensus       108 ~~~~kAl~l~P~~~  121 (174)
                      .-..+|+.++|.+.
T Consensus       140 ~Dcs~al~~~P~h~  153 (390)
T KOG0551|consen  140 NDCSAALKLKPTHL  153 (390)
T ss_pred             HHHHHHHhcCcchh
Confidence            99999999999998

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=95.26  E-value=1.4  Score=37.02  Aligned_cols=125  Identities=10%  Similarity=0.001  Sum_probs=84.3

Q ss_pred             hHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCC
Q 030634           13 LSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFL   92 (174)
Q Consensus        13 ~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~~   92 (174)
                      +-..|+++...++.++|.+-.+|...-.++..++..         +.+-+..+.++++-+|++-..|.-.-.+...+|..
T Consensus        58 ~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~d---------L~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~  128 (318)
T KOG0530|consen   58 KSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSD---------LNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDP  128 (318)
T ss_pred             cCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHH---------HHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCc
Confidence            456788888888888888888887777777665442         36666677777777777777776666666665511


Q ss_pred             c------------------------cchhhhhcCHHHHHHHHHHHHHhCCCCH---------------------------
Q 030634           93 T------------------------ADLSEAKGDFDKASECFQRAVDEEPTNE---------------------------  121 (174)
Q Consensus        93 ~------------------------~~~~~a~~~~~~Ai~~~~kAl~l~P~~~---------------------------  121 (174)
                      .                        .=.-...+.|+.-+.+..+.|+.|--|-                           
T Consensus       129 s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~  208 (318)
T KOG0530|consen  129 SFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELN  208 (318)
T ss_pred             ccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHH
Confidence            0                        0000223467777777777777664332                           


Q ss_pred             HHHHHHhcCCCChHHHHHHHHHHHh
Q 030634          122 LYQKSLEVSTKAPELHMELHKHGIN  146 (174)
Q Consensus       122 ~y~~Al~l~~~~~~~~~~l~~~~~~  146 (174)
                      ...+.+.++|....++..|..++..
T Consensus       209 yt~~~I~~vP~NeSaWnYL~G~l~~  233 (318)
T KOG0530|consen  209 YTKDKILLVPNNESAWNYLKGLLEL  233 (318)
T ss_pred             HHHHHHHhCCCCccHHHHHHHHHHh
Confidence            3466789999999999999888775

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=95.15  E-value=0.027  Score=51.71  Aligned_cols=92  Identities=15%  Similarity=0.105  Sum_probs=61.3

Q ss_pred             HhhhhHHHHHHHHHHHHhhCCCCH--HHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 030634            9 DRLLLSEHNRKTAEANYAKDPLDA--DNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAH   86 (174)
Q Consensus         9 ~~~~~~~eAl~~~~~al~~~P~~~--~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~   86 (174)
                      ..+|.-.+|+.++..++...|...  .++..+|.++..+|..          -+|--++..|+.-.|....-+|.+|+++
T Consensus       224 R~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~s----------adA~iILhAA~~dA~~~t~n~y~l~~i~  293 (886)
T KOG4507|consen  224 RIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFS----------ADAAVILHAALDDADFFTSNYYTLGNIY  293 (886)
T ss_pred             HHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccc----------cchhheeehhccCCccccccceeHHHHH
Confidence            344566666666666666655532  2555666666666665          5555556666665555555566666666


Q ss_pred             HhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634           87 TSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (174)
Q Consensus        87 ~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~  121 (174)
                      ..+|           +|...+.+|..+.+.+|...
T Consensus       294 aml~-----------~~N~S~~~ydha~k~~p~f~  317 (886)
T KOG4507|consen  294 AMLG-----------EYNHSVLCYDHALQARPGFE  317 (886)
T ss_pred             HHHh-----------hhhhhhhhhhhhhccCcchh
Confidence            6666           89999999999999999765

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=95.11  E-value=0.039  Score=47.29  Aligned_cols=80  Identities=10%  Similarity=0.079  Sum_probs=65.6

Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHhCCCCccchhhh
Q 030634           21 AEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWS-LGNAHTSCGFLTADLSEA   99 (174)
Q Consensus        21 ~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~-LG~a~~~lG~~~~~~~~a   99 (174)
                      +.++-...|+|+..|...+.-....|.+          .+--..|-+++...|.+++.|.. -..-+...+         
T Consensus        96 ~~R~tnkff~D~k~w~~y~~Y~~k~k~y----------~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~a---------  156 (435)
T COG5191          96 LYRSTNKFFNDPKIWSQYAAYVIKKKMY----------GEMKNIFAECLTKHPLNVDLWIYCCAFELFEIA---------  156 (435)
T ss_pred             eehhhhcCCCCcHHHHHHHHHHHHHHHH----------HHHHHHHHHHHhcCCCCceeeeeeccchhhhhc---------
Confidence            4455567899999998887766665555          88888999999999999999876 444456656         


Q ss_pred             hcCHHHHHHHHHHHHHhCCCCH
Q 030634          100 KGDFDKASECFQRAVDEEPTNE  121 (174)
Q Consensus       100 ~~~~~~Ai~~~~kAl~l~P~~~  121 (174)
                        +++.+...|.++|+.||+++
T Consensus       157 --ni~s~Ra~f~~glR~N~~~p  176 (435)
T COG5191         157 --NIESSRAMFLKGLRMNSRSP  176 (435)
T ss_pred             --cHHHHHHHHHhhhccCCCCc
Confidence              99999999999999999998

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=95.07  E-value=0.25  Score=44.64  Aligned_cols=92  Identities=17%  Similarity=0.187  Sum_probs=80.9

Q ss_pred             HhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 030634            9 DRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTS   88 (174)
Q Consensus         9 ~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~   88 (174)
                      ++++.+..|...+++|+..+-.+...|...+.+-+.....          .-|...+.+|+.+-|.-...|+..-.+--.
T Consensus        84 esq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~v----------NhARNv~dRAvt~lPRVdqlWyKY~ymEE~  153 (677)
T KOG1915|consen   84 ESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQV----------NHARNVWDRAVTILPRVDQLWYKYIYMEEM  153 (677)
T ss_pred             HhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhH----------hHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence            3566788899999999999999999999999988887666          999999999999999999999988777778


Q ss_pred             CCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634           89 CGFLTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (174)
Q Consensus        89 lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~  121 (174)
                      +|           +..-|.+.|.+=++..|+-.
T Consensus       154 Lg-----------Ni~gaRqiferW~~w~P~eq  175 (677)
T KOG1915|consen  154 LG-----------NIAGARQIFERWMEWEPDEQ  175 (677)
T ss_pred             hc-----------ccHHHHHHHHHHHcCCCcHH
Confidence            77           88888888888888888765

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=95.03  E-value=0.45  Score=43.47  Aligned_cols=139  Identities=12%  Similarity=0.021  Sum_probs=88.7

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHH-------hCCCCHHHHHHHHHHH
Q 030634           14 SEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALV-------IDPAKHYTLWSLGNAH   86 (174)
Q Consensus        14 ~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~-------ldP~~~~a~~~LG~a~   86 (174)
                      ..+|.+.++.+.  +-.+..+.+.+|.++..-+.-     ....++.|+..|+.+.+       .-  ++.+.+.+|.+|
T Consensus       228 ~~~a~~~~~~~a--~~g~~~a~~~~g~~y~~G~~g-----~~~d~e~a~~~l~~aa~~~~~~a~~~--~~~a~~~lg~~Y  298 (552)
T KOG1550|consen  228 LSEAFKYYREAA--KLGHSEAQYALGICYLAGTYG-----VTQDLESAIEYLKLAAESFKKAATKG--LPPAQYGLGRLY  298 (552)
T ss_pred             hhHHHHHHHHHH--hhcchHHHHHHHHHHhhcccc-----ccccHHHHHHHHHHHHHHHHHHHhhc--CCccccHHHHHH
Confidence            456777777663  467889999999999764221     23445899999998877       33  666889999999


Q ss_pred             HhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCHHHHHHHhcCCCChHHHHHHHHHHHhccccCCCCchhhHHHHHHHH
Q 030634           87 TSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLEVSTKAPELHMELHKHGINQQTLGGGSSASSAQVNFCIC  166 (174)
Q Consensus        87 ~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~~y~~Al~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (174)
                      .... .+...     +++.|+.+|.++-++...+..|..+.-.....+.--...+..++.....   --.+++.+++|+|
T Consensus       299 ~~g~-~~~~~-----d~~~A~~~~~~aA~~g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~---~G~~~A~~~la~~  369 (552)
T KOG1550|consen  299 LQGL-GVEKI-----DYEKALKLYTKAAELGNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAK---AGHILAIYRLALC  369 (552)
T ss_pred             hcCC-CCccc-----cHHHHHHHHHHHHhcCCchHHHHHHHHHHcCCccccHHHHHHHHHHHHH---cCChHHHHHHHHH
Confidence            8853 11111     7899999999999998877765544322111111111122222222222   2256788888888


Q ss_pred             Hhhh
Q 030634          167 VHQM  170 (174)
Q Consensus       167 ~~~~  170 (174)
                      .+.+
T Consensus       370 y~~G  373 (552)
T KOG1550|consen  370 YELG  373 (552)
T ss_pred             HHhC
Confidence            8876

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.96  E-value=0.19  Score=43.62  Aligned_cols=78  Identities=14%  Similarity=0.039  Sum_probs=48.5

Q ss_pred             CChhhHHhhhhHHHHHHHHHHHHhh-CCCCH---HHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHH
Q 030634            3 FSQSDFDRLLLSEHNRKTAEANYAK-DPLDA---DNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYT   78 (174)
Q Consensus         3 ~~~~~~~~~~~~~eAl~~~~~al~~-~P~~~---~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a   78 (174)
                      ||..-+-.+|+-..-...+++.+.. +|+-|   -..-.++..+.+.|-+          ++|.+..++++++||.|..+
T Consensus       142 fsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y----------~dAEk~A~ralqiN~~D~Wa  211 (491)
T KOG2610|consen  142 FSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIY----------DDAEKQADRALQINRFDCWA  211 (491)
T ss_pred             hhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccc----------hhHHHHHHhhccCCCcchHH
Confidence            4555555566666666666666666 55543   3333344455555555          77777777777777777777


Q ss_pred             HHHHHHHHHhCC
Q 030634           79 LWSLGNAHTSCG   90 (174)
Q Consensus        79 ~~~LG~a~~~lG   90 (174)
                      ....+.++..-|
T Consensus       212 ~Ha~aHVlem~~  223 (491)
T KOG2610|consen  212 SHAKAHVLEMNG  223 (491)
T ss_pred             HHHHHHHHHhcc
Confidence            777777666555

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=94.80  E-value=0.12  Score=29.85  Aligned_cols=34  Identities=18%  Similarity=0.205  Sum_probs=28.0

Q ss_pred             HHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHH--HHHHHHhCCCC
Q 030634           76 HYTLWSLGNAHTSCGFLTADLSEAKGDFDKASEC--FQRAVDEEPTN  120 (174)
Q Consensus        76 ~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~--~~kAl~l~P~~  120 (174)
                      ++.++.+|..+...|           ++++|++.  |+-+..++|.|
T Consensus         1 ~e~~y~~a~~~y~~~-----------ky~~A~~~~~y~~l~~ld~~n   36 (36)
T PF07720_consen    1 PEYLYGLAYNFYQKG-----------KYDEAIHFFQYAFLCALDKYN   36 (36)
T ss_dssp             HHHHHHHHHHHHHTT------------HHHHHHHHHHHHHHHHTTT-
T ss_pred             CcHHHHHHHHHHHHh-----------hHHHHHHHHHHHHHHHhcccC
Confidence            467889999999988           99999999  66998888875

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=94.61  E-value=0.96  Score=38.40  Aligned_cols=89  Identities=13%  Similarity=0.154  Sum_probs=66.6

Q ss_pred             HhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH-HHH
Q 030634            9 DRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGN-AHT   87 (174)
Q Consensus         9 ~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~-a~~   87 (174)
                      ++....+.-+..+++|++.+|++...+..+=.+..+....          ++....+++++..+|+++..|...=. ...
T Consensus        42 ~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~----------~~l~~~we~~l~~~~~~~~LW~~yL~~~q~  111 (321)
T PF08424_consen   42 ERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDS----------EKLAKKWEELLFKNPGSPELWREYLDFRQS  111 (321)
T ss_pred             hHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCH----------HHHHHHHHHHHHHCCCChHHHHHHHHHHHH
Confidence            4566778889999999999999999888877777776655          77888999999999999999865433 333


Q ss_pred             hCCCCccchhhhhcCHHHHHHHHHHHHHh
Q 030634           88 SCGFLTADLSEAKGDFDKASECFQRAVDE  116 (174)
Q Consensus        88 ~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l  116 (174)
                      ..+         .-.+++....|.++|+.
T Consensus       112 ~~~---------~f~v~~~~~~y~~~l~~  131 (321)
T PF08424_consen  112 NFA---------SFTVSDVRDVYEKCLRA  131 (321)
T ss_pred             Hhc---------cCcHHHHHHHHHHHHHH
Confidence            222         11566777777766654

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=94.55  E-value=0.27  Score=45.11  Aligned_cols=89  Identities=19%  Similarity=0.081  Sum_probs=73.6

Q ss_pred             hhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHH-HHHHhCCCCHHHHHHH------HH
Q 030634           12 LLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFE-EALVIDPAKHYTLWSL------GN   84 (174)
Q Consensus        12 ~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~le-kAl~ldP~~~~a~~~L------G~   84 (174)
                      +....+.......+..+|+++.+..++|.++...|..          ..++..+. .+.+..|++..+...+      |.
T Consensus        81 ~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~----------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  150 (620)
T COG3914          81 ADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQ----------FLALADISEIAEWLSPDNAEFLGHLIRFYQLGR  150 (620)
T ss_pred             ccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhH----------HHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHH
Confidence            4556777888899999999999999999999887776          55555554 5999999999987776      55


Q ss_pred             HHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634           85 AHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (174)
Q Consensus        85 a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~  121 (174)
                      .+..+|           +..++.....+++++.|++.
T Consensus       151 ~~~~l~-----------~~~~~~~~l~~~~d~~p~~~  176 (620)
T COG3914         151 YLKLLG-----------RTAEAELALERAVDLLPKYP  176 (620)
T ss_pred             HHHHhc-----------cHHHHHHHHHHHHHhhhhhh
Confidence            555555           99999999999999999987

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=94.33  E-value=0.19  Score=45.50  Aligned_cols=69  Identities=12%  Similarity=-0.039  Sum_probs=58.5

Q ss_pred             hhhhHHHHHHHHHHHHh---------h---------CCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHh
Q 030634           10 RLLLSEHNRKTAEANYA---------K---------DPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVI   71 (174)
Q Consensus        10 ~~~~~~eAl~~~~~al~---------~---------~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~l   71 (174)
                      +++.|.-+...|.+|++         +         .-..-+++|+.|..+...|++          ..|.+||.++...
T Consensus       295 ~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grP----------l~AfqCf~~av~v  364 (696)
T KOG2471|consen  295 QLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRP----------LLAFQCFQKAVHV  364 (696)
T ss_pred             ehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCc----------HHHHHHHHHHHHH
Confidence            56777778888888874         1         223568999999999999999          9999999999999


Q ss_pred             CCCCHHHHHHHHHHHHh
Q 030634           72 DPAKHYTLWSLGNAHTS   88 (174)
Q Consensus        72 dP~~~~a~~~LG~a~~~   88 (174)
                      .-.+|..|..|+.|...
T Consensus       365 fh~nPrlWLRlAEcCim  381 (696)
T KOG2471|consen  365 FHRNPRLWLRLAECCIM  381 (696)
T ss_pred             HhcCcHHHHHHHHHHHH
Confidence            99999999999988753

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=94.29  E-value=0.49  Score=47.41  Aligned_cols=92  Identities=12%  Similarity=0.109  Sum_probs=55.0

Q ss_pred             hHHhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCC--CHHHHHHHHH
Q 030634            7 DFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPA--KHYTLWSLGN   84 (174)
Q Consensus         7 ~~~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~--~~~a~~~LG~   84 (174)
                      -|++-..|++|.++++.-++..-+....|..+|..++...+-          +.|...+.+|++--|+  +.+..--.+.
T Consensus      1539 iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~----------~aa~~lL~rAL~~lPk~eHv~~IskfAq 1608 (1710)
T KOG1070|consen 1539 IYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEA----------EAARELLKRALKSLPKQEHVEFISKFAQ 1608 (1710)
T ss_pred             HHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHH----------HHHHHHHHHHHhhcchhhhHHHHHHHHH
Confidence            355666666677777666666666667777777666665554          5566666666666666  4454445555


Q ss_pred             HHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCC
Q 030634           85 AHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPT  119 (174)
Q Consensus        85 a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~  119 (174)
                      +-++.|           +-+.+...|+-.|.-.|.
T Consensus      1609 LEFk~G-----------DaeRGRtlfEgll~ayPK 1632 (1710)
T KOG1070|consen 1609 LEFKYG-----------DAERGRTLFEGLLSAYPK 1632 (1710)
T ss_pred             HHhhcC-----------CchhhHHHHHHHHhhCcc
Confidence            555555           545555555544444443

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=94.19  E-value=0.31  Score=43.61  Aligned_cols=96  Identities=14%  Similarity=-0.047  Sum_probs=68.2

Q ss_pred             HhhhhHHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHH-HHHHH
Q 030634            9 DRLLLSEHNRKTAEANYAKDPLDA----DNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYT-LWSLG   83 (174)
Q Consensus         9 ~~~~~~~eAl~~~~~al~~~P~~~----~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a-~~~LG   83 (174)
                      ...++.++|++.+++++......+    -+++-+|.++..+.++          ++|..+|.+..+.+.-.... .|..|
T Consensus       278 ~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w----------~~A~~~f~~L~~~s~WSka~Y~Y~~a  347 (468)
T PF10300_consen  278 RLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDW----------EEAAEYFLRLLKESKWSKAFYAYLAA  347 (468)
T ss_pred             HHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchH----------HHHHHHHHHHHhccccHHHHHHHHHH
Confidence            345689999999999886444433    3667888899999898          99999999999976554433 46788


Q ss_pred             HHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCC
Q 030634           84 NAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEP  118 (174)
Q Consensus        84 ~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P  118 (174)
                      .++..+|+.    ..+...-++|.++|+++-.+-.
T Consensus       348 ~c~~~l~~~----~~~~~~~~~a~~l~~~vp~l~~  378 (468)
T PF10300_consen  348 ACLLMLGRE----EEAKEHKKEAEELFRKVPKLKQ  378 (468)
T ss_pred             HHHHhhccc----hhhhhhHHHHHHHHHHHHHHHh
Confidence            899998811    1111122788888887665543

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=94.07  E-value=1  Score=39.81  Aligned_cols=107  Identities=13%  Similarity=0.125  Sum_probs=80.8

Q ss_pred             hhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcC-cc-cchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 030634           11 LLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQ-FE-SVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTS   88 (174)
Q Consensus        11 ~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~-~~-~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~   88 (174)
                      ..+-+++++.-...+..+|....+|+..-.++...-- .+ ........+++-+...+.+++.+|++..+|+-+-.++.+
T Consensus        42 ~~yd~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~  121 (421)
T KOG0529|consen   42 KEYDEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQK  121 (421)
T ss_pred             cccchHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHh
Confidence            3456788888899999999998888776555533211 00 111223356888999999999999999999999999998


Q ss_pred             CCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH---HHHHH
Q 030634           89 CGFLTADLSEAKGDFDKASECFQRAVDEEPTNE---LYQKS  126 (174)
Q Consensus        89 lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~---~y~~A  126 (174)
                      .+         .-++..=+....+++++||.|-   .||+-
T Consensus       122 ~p---------~~~~~~EL~lcek~L~~D~RNfh~W~YRRf  153 (421)
T KOG0529|consen  122 NP---------HSDWNTELQLCEKALKQDPRNFHAWHYRRF  153 (421)
T ss_pred             CC---------CchHHHHHHHHHHHHhcCcccccchHHHHH
Confidence            76         2268899999999999999887   45543

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=93.87  E-value=0.15  Score=41.35  Aligned_cols=45  Identities=18%  Similarity=0.129  Sum_probs=39.3

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHh
Q 030634           61 AISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDE  116 (174)
Q Consensus        61 Ai~~lekAl~ldP~~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l  116 (174)
                      |+.+|.+|+.+.|++...|..||.+....|           +.=.|+-+|-|++-.
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~-----------~~l~avy~y~Rsl~~   45 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASYQG-----------DDLDAVYYYIRSLAV   45 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT------------HHHHHHHHHHHHSS
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhcccc-----------chHHHHHHHHHHHhc
Confidence            678999999999999999999999999988           999999998887744

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=93.74  E-value=1.6  Score=36.32  Aligned_cols=100  Identities=14%  Similarity=0.094  Sum_probs=68.3

Q ss_pred             HHhhhhHHHHHHHHHHHHhhCC----CCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCC---------
Q 030634            8 FDRLLLSEHNRKTAEANYAKDP----LDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPA---------   74 (174)
Q Consensus         8 ~~~~~~~~eAl~~~~~al~~~P----~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~---------   74 (174)
                      ..+.|++.-|...+.++...++    ..+.+.+-.+..+...|+.          .+|+..++..++....         
T Consensus       156 aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~----------~~Ai~~L~~~~~~~~~~~~~~~~~~  225 (352)
T PF02259_consen  156 ARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQ----------EEAIQKLRELLKCRLSKNIDSISNA  225 (352)
T ss_pred             HHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCH----------HHHHHHHHHHHHHHhhhccccccHH
Confidence            4567888899999988887652    2578888889999998888          9999999888882111         


Q ss_pred             ------------------CHHHHHHHHHHHHhCCCCccchhhh------hcCHHHHHHHHHHHHHhCCCCH
Q 030634           75 ------------------KHYTLWSLGNAHTSCGFLTADLSEA------KGDFDKASECFQRAVDEEPTNE  121 (174)
Q Consensus        75 ------------------~~~a~~~LG~a~~~lG~~~~~~~~a------~~~~~~Ai~~~~kAl~l~P~~~  121 (174)
                                        ...-.-..+.++..+|    .+-..      .+..++++..|++|++++|+..
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a----~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  292 (352)
T PF02259_consen  226 ELKSGLLESLEVISSTNLDKESKELKAKAFLLLA----KWLDELYSKLSSESSDEILKYYKEATKLDPSWE  292 (352)
T ss_pred             HHhhccccccccccccchhhhhHHHHHHHHHHHH----HHHHhhccccccccHHHHHHHHHHHHHhChhHH
Confidence                              1111123344554444    22222      2578888888888888888766

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=93.72  E-value=0.8  Score=42.12  Aligned_cols=85  Identities=16%  Similarity=0.041  Sum_probs=62.1

Q ss_pred             HHHHHHHHHhhCCCCHHHHHHH--HHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCcc
Q 030634           17 NRKTAEANYAKDPLDADNLTRW--GEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTA   94 (174)
Q Consensus        17 Al~~~~~al~~~P~~~~a~~~l--g~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~~~~   94 (174)
                      ++..+..-+.++|.+++.+...  ...+...+..          ..++-.++.++..||++..++.+||.++...|    
T Consensus        50 ~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~----------~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~----  115 (620)
T COG3914          50 AIYALLLGIAINDVNPELLLAAFLSILLAPLADS----------TLAFLAKRIPLSVNPENCPAVQNLAAALELDG----  115 (620)
T ss_pred             HHHHHHccCccCCCCHHHHHHHHHHhhccccccc----------hhHHHHHhhhHhcCcccchHHHHHHHHHHHhh----
Confidence            3334444445778888875443  5555556665          79999999999999999999999999998876    


Q ss_pred             chhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634           95 DLSEAKGDFDKASECFQRAVDEEPTNE  121 (174)
Q Consensus        95 ~~~~a~~~~~~Ai~~~~kAl~l~P~~~  121 (174)
                            ..+.-++..-..+.+..|++.
T Consensus       116 ------~~~~~~~~~~~~a~~~~~~~~  136 (620)
T COG3914         116 ------LQFLALADISEIAEWLSPDNA  136 (620)
T ss_pred             ------hHHHHHHHHHHHHHhcCcchH
Confidence                  234445555555888888887

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=93.63  E-value=3.4  Score=33.81  Aligned_cols=91  Identities=15%  Similarity=0.029  Sum_probs=60.1

Q ss_pred             hhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhC
Q 030634           10 RLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSC   89 (174)
Q Consensus        10 ~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~l   89 (174)
                      ....+..|.+.+..+..  -.++.....+|.++......      ....++|+..|+  ...+..++.+.++||.+|..-
T Consensus        53 ~~~~~~~a~~~~~~a~~--~~~~~a~~~l~~~y~~g~gv------~~~~~~A~~~~~--~~a~~g~~~a~~~lg~~~~~G  122 (292)
T COG0790          53 YPPDYAKALKSYEKAAE--LGDAAALALLGQMYGAGKGV------SRDKTKAADWYR--CAAADGLAEALFNLGLMYANG  122 (292)
T ss_pred             ccccHHHHHHHHHHhhh--cCChHHHHHHHHHHHhccCc------cccHHHHHHHHH--HHhhcccHHHHHhHHHHHhcC
Confidence            44567777777777755  33447777777777653332      223477888888  444577788888888888762


Q ss_pred             CCCccchhhhhcCHHHHHHHHHHHHHhC
Q 030634           90 GFLTADLSEAKGDFDKASECFQRAVDEE  117 (174)
Q Consensus        90 G~~~~~~~~a~~~~~~Ai~~~~kAl~l~  117 (174)
                      .    .   ...++.+|..+|++|.+..
T Consensus       123 ~----g---v~~d~~~A~~~~~~Aa~~g  143 (292)
T COG0790         123 R----G---VPLDLVKALKYYEKAAKLG  143 (292)
T ss_pred             C----C---cccCHHHHHHHHHHHHHcC
Confidence            2    0   1227888888888888773

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=93.51  E-value=0.82  Score=38.46  Aligned_cols=52  Identities=19%  Similarity=0.257  Sum_probs=40.7

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCC
Q 030634           59 NEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN  120 (174)
Q Consensus        59 ~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~  120 (174)
                      ..|+..-+.+|.++|-+-..|...-.++..++          .+..+-++++.+.++-+|+|
T Consensus        60 ~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~----------~dL~~El~~l~eI~e~npKN  111 (318)
T KOG0530|consen   60 PRALQLTEDAIRLNPANYTVWQYRRVILRHLM----------SDLNKELEYLDEIIEDNPKN  111 (318)
T ss_pred             HHHHHHHHHHHHhCcccchHHHHHHHHHHHhH----------HHHHHHHHHHHHHHHhCccc
Confidence            68888889999999999999998888888876          24566666666666666654

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=93.46  E-value=0.53  Score=41.33  Aligned_cols=90  Identities=22%  Similarity=0.182  Sum_probs=67.8

Q ss_pred             hhHHhhhhHHHHHHHHHHHHhhCC----CC------HHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhC---
Q 030634            6 SDFDRLLLSEHNRKTAEANYAKDP----LD------ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVID---   72 (174)
Q Consensus         6 ~~~~~~~~~~eAl~~~~~al~~~P----~~------~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ld---   72 (174)
                      |-|.++..+++|+....+|+++--    +|      .-+++++++++..+|+.          -+|.++.++|.++.   
T Consensus       170 slf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~L----------gdA~e~C~Ea~klal~~  239 (518)
T KOG1941|consen  170 SLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRL----------GDAMECCEEAMKLALQH  239 (518)
T ss_pred             HHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhccc----------ccHHHHHHHHHHHHHHh
Confidence            568999999999999999988632    22      23678889999999998          78888888887762   


Q ss_pred             ---CCCHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHh
Q 030634           73 ---PAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDE  116 (174)
Q Consensus        73 ---P~~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l  116 (174)
                         |-......-+|.+|...|           +.+.|..-|+.|...
T Consensus       240 Gdra~~arc~~~~aDIyR~~g-----------d~e~af~rYe~Am~~  275 (518)
T KOG1941|consen  240 GDRALQARCLLCFADIYRSRG-----------DLERAFRRYEQAMGT  275 (518)
T ss_pred             CChHHHHHHHHHHHHHHHhcc-----------cHhHHHHHHHHHHHH
Confidence               334556677899999988           666666666666554

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=93.40  E-value=0.81  Score=38.50  Aligned_cols=62  Identities=21%  Similarity=0.277  Sum_probs=51.8

Q ss_pred             HHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHH
Q 030634           34 NLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRA  113 (174)
Q Consensus        34 a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kA  113 (174)
                      ++..++..+...|++          +.++..+++.+.++|-+-.+|..+-.+|+..|           +...|+..|++.
T Consensus       155 ~l~~lae~~~~~~~~----------~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g-----------~~~~ai~~y~~l  213 (280)
T COG3629         155 ALTKLAEALIACGRA----------DAVIEHLERLIELDPYDEPAYLRLMEAYLVNG-----------RQSAAIRAYRQL  213 (280)
T ss_pred             HHHHHHHHHHhcccH----------HHHHHHHHHHHhcCccchHHHHHHHHHHHHcC-----------CchHHHHHHHHH
Confidence            444555555555555          99999999999999999999999999999988           999999999887


Q ss_pred             HHh
Q 030634          114 VDE  116 (174)
Q Consensus       114 l~l  116 (174)
                      -+.
T Consensus       214 ~~~  216 (280)
T COG3629         214 KKT  216 (280)
T ss_pred             HHH
Confidence            663

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=93.35  E-value=0.35  Score=40.27  Aligned_cols=84  Identities=15%  Similarity=0.100  Sum_probs=57.5

Q ss_pred             HHHHHHHHHhcCcccch---hhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCccchh------hhhcCHHHH
Q 030634           36 TRWGEALLELSQFESVS---DSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLS------EAKGDFDKA  106 (174)
Q Consensus        36 ~~lg~~l~~~g~~~~~~---~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~~~~~~~------~a~~~~~~A  106 (174)
                      -..+.++...|++....   ...+..++++..|+++++++|+...+|+.+|..+..+-+..+..+      ....-...|
T Consensus       249 ~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  328 (352)
T PF02259_consen  249 ELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQA  328 (352)
T ss_pred             HHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHH
Confidence            44455666555542211   123556999999999999999999999999999876542221111      122334669


Q ss_pred             HHHHHHHHHhCCC
Q 030634          107 SECFQRAVDEEPT  119 (174)
Q Consensus       107 i~~~~kAl~l~P~  119 (174)
                      +.+|-+|+...|+
T Consensus       329 i~~y~~al~~~~~  341 (352)
T PF02259_consen  329 IEGYLKALSLGSK  341 (352)
T ss_pred             HHHHHHHHhhCCC
Confidence            9999999999998

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=93.28  E-value=0.46  Score=39.72  Aligned_cols=52  Identities=21%  Similarity=0.264  Sum_probs=49.5

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634           59 NEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (174)
Q Consensus        59 ~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~  121 (174)
                      +.|..+.++.+.++|+++.-+-..|.+|..+|           -+.-|+.-+...++.-|+.+
T Consensus       198 ~~al~~~~r~l~l~P~dp~eirDrGliY~ql~-----------c~~vAl~dl~~~~~~~P~~~  249 (269)
T COG2912         198 ELALRVAERLLDLNPEDPYEIRDRGLIYAQLG-----------CYHVALEDLSYFVEHCPDDP  249 (269)
T ss_pred             HHHHHHHHHHHhhCCCChhhccCcHHHHHhcC-----------CchhhHHHHHHHHHhCCCch
Confidence            99999999999999999999999999999999           99999999999888888877

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=93.21  E-value=0.77  Score=36.85  Aligned_cols=55  Identities=15%  Similarity=0.073  Sum_probs=43.9

Q ss_pred             CCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHhCCCCccchhhhhcCHHH
Q 030634           30 LDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPA----KHYTLWSLGNAHTSCGFLTADLSEAKGDFDK  105 (174)
Q Consensus        30 ~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~----~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~  105 (174)
                      ++++..+.+|.-|.... .          ++|+..+-++|++.+.    |++++..|+.++..+|           ++++
T Consensus       139 ~t~elq~aLAtyY~krD-~----------~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~-----------~~e~  196 (203)
T PF11207_consen  139 ETAELQYALATYYTKRD-P----------EKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLK-----------NYEQ  196 (203)
T ss_pred             CCHHHHHHHHHHHHccC-H----------HHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhc-----------chhh
Confidence            36777777777665432 2          8999999999999555    5899999999999998           8887


Q ss_pred             H
Q 030634          106 A  106 (174)
Q Consensus       106 A  106 (174)
                      |
T Consensus       197 A  197 (203)
T PF11207_consen  197 A  197 (203)
T ss_pred             h
Confidence            7

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=93.21  E-value=1.6  Score=42.48  Aligned_cols=96  Identities=13%  Similarity=0.053  Sum_probs=76.3

Q ss_pred             hhhHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 030634           11 LLLSEHNRKTAEANYAKDPLD---ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT   87 (174)
Q Consensus        11 ~~~~~eAl~~~~~al~~~P~~---~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~   87 (174)
                      -..|++|+..|++...-.|+-   -++.++.|.++++...-..   +...+++|+.-|++.- --|.-|-=|..-+.+|.
T Consensus       488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  563 (932)
T PRK13184        488 EKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQG---DPRDFTQALSEFSYLH-GGVGAPLEYLGKALVYQ  563 (932)
T ss_pred             hHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcC---ChHHHHHHHHHHHHhc-CCCCCchHHHhHHHHHH
Confidence            357999999999999999884   6788999999887543211   1135688888888844 35777766777777888


Q ss_pred             hCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634           88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (174)
Q Consensus        88 ~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~  121 (174)
                      .+|           +|++-+++|.-|++.-|+++
T Consensus       564 ~~~-----------~~~~~~~~~~~~~~~~~~~~  586 (932)
T PRK13184        564 RLG-----------EYNEEIKSLLLALKRYSQHP  586 (932)
T ss_pred             Hhh-----------hHHHHHHHHHHHHHhcCCCC
Confidence            888           99999999999999999998

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=93.18  E-value=0.39  Score=33.26  Aligned_cols=49  Identities=18%  Similarity=0.384  Sum_probs=37.4

Q ss_pred             HHHHHHHHHHHHh----CCCC-----HHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCC
Q 030634           59 NEAISKFEEALVI----DPAK-----HYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEP  118 (174)
Q Consensus        59 ~eAi~~lekAl~l----dP~~-----~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P  118 (174)
                      .+|++.+.+....    +...     ..+..++|.++...|           ++++|+..+++|+++-.
T Consensus        15 ~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G-----------~~~~A~~~l~eAi~~Ar   72 (94)
T PF12862_consen   15 SEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFG-----------HYEEALQALEEAIRLAR   72 (94)
T ss_pred             HHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhC-----------CHHHHHHHHHHHHHHHH
Confidence            7777766666544    2222     457788999999999           99999999999998754

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.09  E-value=3.1  Score=39.04  Aligned_cols=91  Identities=14%  Similarity=0.113  Sum_probs=73.8

Q ss_pred             hHHhhhhHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHH
Q 030634            7 DFDRLLLSEHNRKTAEANYAKDPLD------ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLW   80 (174)
Q Consensus         7 ~~~~~~~~~eAl~~~~~al~~~P~~------~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~   80 (174)
                      +-=++..|.-+++.|...+.--|.|      +....++..||..+.+.          +.|++.+++|-+.||.++-..+
T Consensus       363 ~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QL----------D~A~E~~~EAE~~d~~~~l~q~  432 (872)
T KOG4814|consen  363 KLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQL----------DNAVEVYQEAEEVDRQSPLCQL  432 (872)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHH----------HHHHHHHHHHHhhccccHHHHH
Confidence            3345678888889999888866654      45677888899998888          9999999999999999999888


Q ss_pred             HHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCC
Q 030634           81 SLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEP  118 (174)
Q Consensus        81 ~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P  118 (174)
                      .+-.+...-|           .-++|+.+..+....--
T Consensus       433 ~~~~~~~~E~-----------~Se~AL~~~~~~~s~~~  459 (872)
T KOG4814|consen  433 LMLQSFLAED-----------KSEEALTCLQKIKSSED  459 (872)
T ss_pred             HHHHHHHHhc-----------chHHHHHHHHHHHhhhc
Confidence            8877777766           88999998888775533

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.94  E-value=2  Score=35.63  Aligned_cols=99  Identities=17%  Similarity=0.087  Sum_probs=53.8

Q ss_pred             hHHHHHHHHHHHHhhC-----CC-CHHHHHHHHHHHHHhcCcccch----h-----hhhhHHHHHHHHHHHHHhCCCCHH
Q 030634           13 LSEHNRKTAEANYAKD-----PL-DADNLTRWGEALLELSQFESVS----D-----SKKIINEAISKFEEALVIDPAKHY   77 (174)
Q Consensus        13 ~~~eAl~~~~~al~~~-----P~-~~~a~~~lg~~l~~~g~~~~~~----~-----~~~~~~eAi~~lekAl~ldP~~~~   77 (174)
                      .|++|..++.++-...     .+ --.++...+.++.+.|.-.+.-    +     .....++|+.+++++++|.-+-..
T Consensus        29 k~eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk~~~~eAv~cL~~aieIyt~~Gr  108 (288)
T KOG1586|consen   29 KYEEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKKVDPEEAVNCLEKAIEIYTDMGR  108 (288)
T ss_pred             chHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHhhhH
Confidence            7888888888775432     11 1234444444444444311100    0     012347777777777777544332


Q ss_pred             H------HHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634           78 T------LWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (174)
Q Consensus        78 a------~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~  121 (174)
                      .      ++.+|.+|..-          ..++++||.+|++|-+.-....
T Consensus       109 f~~aAk~~~~iaEiyEsd----------l~d~ekaI~~YE~Aae~yk~ee  148 (288)
T KOG1586|consen  109 FTMAAKHHIEIAEIYESD----------LQDFEKAIAHYEQAAEYYKGEE  148 (288)
T ss_pred             HHHHHhhhhhHHHHHhhh----------HHHHHHHHHHHHHHHHHHcchh
Confidence            2      22445544331          2488999999999887655443

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=92.93  E-value=1  Score=30.86  Aligned_cols=47  Identities=19%  Similarity=0.278  Sum_probs=39.5

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHH---HHHhCCCCccchhhhhcCHHHHHHHHHHHHHh
Q 030634           59 NEAISKFEEALVIDPAKHYTLWSLGN---AHTSCGFLTADLSEAKGDFDKASECFQRAVDE  116 (174)
Q Consensus        59 ~eAi~~lekAl~ldP~~~~a~~~LG~---a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l  116 (174)
                      ++|+..++++++..++.++-+..||.   +|...|           +|.+++++--+-+++
T Consensus        23 ~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~G-----------kyr~~L~fA~~Q~~~   72 (80)
T PF10579_consen   23 QQALQKWRKALEKITDREDRFRVLGYLIQAHMEWG-----------KYREMLAFALQQLEI   72 (80)
T ss_pred             HHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHH
Confidence            99999999999999999988877765   567777           999999887776654

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=92.92  E-value=0.44  Score=43.10  Aligned_cols=59  Identities=20%  Similarity=0.115  Sum_probs=52.0

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHH
Q 030634           14 SEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWS   81 (174)
Q Consensus        14 ~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~   81 (174)
                      +.+--+.|.+++..+|++|+.|..-|.-.+..+.-         ++-|...|.++|+.+|+++..|..
T Consensus       121 ~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~n---------i~saRalflrgLR~npdsp~Lw~e  179 (568)
T KOG2396|consen  121 YGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLN---------IESARALFLRGLRFNPDSPKLWKE  179 (568)
T ss_pred             hhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccc---------hHHHHHHHHHHhhcCCCChHHHHH
Confidence            77778899999999999999999999888887662         399999999999999999998753

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=92.87  E-value=0.36  Score=27.89  Aligned_cols=34  Identities=15%  Similarity=0.207  Sum_probs=27.9

Q ss_pred             HHHHHHHHHHHHHhcCcccchhhhhhHHHHHHH--HHHHHHhCCCC
Q 030634           32 ADNLTRWGEALLELSQFESVSDSKKIINEAISK--FEEALVIDPAK   75 (174)
Q Consensus        32 ~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~--lekAl~ldP~~   75 (174)
                      ++.++.+|..+...|++          ++|+..  |+-+..++|.|
T Consensus         1 ~e~~y~~a~~~y~~~ky----------~~A~~~~~y~~l~~ld~~n   36 (36)
T PF07720_consen    1 PEYLYGLAYNFYQKGKY----------DEAIHFFQYAFLCALDKYN   36 (36)
T ss_dssp             HHHHHHHHHHHHHTT-H----------HHHHHHHHHHHHHHHTTT-
T ss_pred             CcHHHHHHHHHHHHhhH----------HHHHHHHHHHHHHHhcccC
Confidence            46788999999999999          999999  55888888875

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=92.80  E-value=0.37  Score=33.36  Aligned_cols=56  Identities=16%  Similarity=0.085  Sum_probs=43.8

Q ss_pred             HhhhhHHHHHHHHHHHHhhCCC---------CHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCC
Q 030634            9 DRLLLSEHNRKTAEANYAKDPL---------DADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPA   74 (174)
Q Consensus         9 ~~~~~~~eAl~~~~~al~~~P~---------~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~   74 (174)
                      =+.+.|.+|++.+.+.++....         ...++.++|.++...|++          ++|+..+++|+++-..
T Consensus         9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~----------~~A~~~l~eAi~~Are   73 (94)
T PF12862_consen    9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHY----------EEALQALEEAIRLARE   73 (94)
T ss_pred             HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCH----------HHHHHHHHHHHHHHHH
Confidence            3567888898888888775322         246778899999999999          9999999999988433

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=92.64  E-value=0.84  Score=34.99  Aligned_cols=70  Identities=17%  Similarity=0.007  Sum_probs=61.8

Q ss_pred             hhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCC
Q 030634           11 LLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCG   90 (174)
Q Consensus        11 ~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG   90 (174)
                      .....++.......--+.|+.++.-.--|.+++..|++          .+|+..|+...+-.|..+-+--.++.|+..+|
T Consensus        23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w----------~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~   92 (153)
T TIGR02561        23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNY----------DEAARILRELLSSAGAPPYGKALLALCLNAKG   92 (153)
T ss_pred             cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCH----------HHHHHHHHhhhccCCCchHHHHHHHHHHHhcC
Confidence            34566676777777778999999999999999999999          99999999999999999988889999999988

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=92.63  E-value=0.51  Score=38.22  Aligned_cols=62  Identities=6%  Similarity=-0.055  Sum_probs=53.4

Q ss_pred             HHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 030634           17 NRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTS   88 (174)
Q Consensus        17 Al~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~   88 (174)
                      |++.|.+|..+.|.+...++.+|.+....|+.          -+|+-.|-+++-..--.+.|.-||...+..
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~----------l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDD----------LDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-H----------HHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhccccch----------HHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            67899999999999999999999999998887          899999999997766679999999999888

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=92.27  E-value=0.2  Score=26.47  Aligned_cols=25  Identities=28%  Similarity=0.306  Sum_probs=21.9

Q ss_pred             HHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHH
Q 030634           77 YTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQR  112 (174)
Q Consensus        77 ~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~k  112 (174)
                      .++++||.++..+|           ++++|...+++
T Consensus         2 ~a~~~la~~~~~~G-----------~~~eA~~~l~~   26 (26)
T PF07721_consen    2 RARLALARALLAQG-----------DPDEAERLLRR   26 (26)
T ss_pred             HHHHHHHHHHHHcC-----------CHHHHHHHHhC
Confidence            57889999999999           99999988763

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=91.79  E-value=8.1  Score=33.52  Aligned_cols=97  Identities=14%  Similarity=0.165  Sum_probs=65.4

Q ss_pred             hhhHHHHHH-----HHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHh-------CCC----
Q 030634           11 LLLSEHNRK-----TAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVI-------DPA----   74 (174)
Q Consensus        11 ~~~~~eAl~-----~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~l-------dP~----   74 (174)
                      +..|..+..     .....+..+|.+.+++..++.++..+|++   ..+.+.++.|+-+|++++--       ++.    
T Consensus        14 q~~F~~~v~~~Dp~~l~~ll~~~PyHidtLlqls~v~~~~gd~---~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~   90 (360)
T PF04910_consen   14 QEQFYAAVQSHDPNALINLLQKNPYHIDTLLQLSEVYRQQGDH---AQANDLLERALFAFERAFHPSFSPFRSNLTSGNC   90 (360)
T ss_pred             HHHHHHHHHccCHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHHHHHHHHHHhhhhhcccccCcc
Confidence            335555554     24455678999999999999999999987   22334455666666554422       112    


Q ss_pred             --------CHH---HHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCC-CH
Q 030634           75 --------KHY---TLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPT-NE  121 (174)
Q Consensus        75 --------~~~---a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~-~~  121 (174)
                              |-.   +.+.....+...|           -+.-|+++.+-.+.+||. |+
T Consensus        91 rL~~~~~eNR~fflal~r~i~~L~~RG-----------~~rTAlE~~KlLlsLdp~~DP  138 (360)
T PF04910_consen   91 RLDYRRPENRQFFLALFRYIQSLGRRG-----------CWRTALEWCKLLLSLDPDEDP  138 (360)
T ss_pred             ccCCccccchHHHHHHHHHHHHHHhcC-----------cHHHHHHHHHHHHhcCCCCCc
Confidence                    222   3344455556666           899999999999999999 66

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=91.78  E-value=1  Score=37.65  Aligned_cols=68  Identities=16%  Similarity=0.095  Sum_probs=60.3

Q ss_pred             hHHhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 030634            7 DFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGN   84 (174)
Q Consensus         7 ~~~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~   84 (174)
                      -|=+-+..+.|++..++.+.++|.+|.-+.-.|.+|.++|-+          .-|+..++..++.-|+++.+-.....
T Consensus       190 ~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~----------~vAl~dl~~~~~~~P~~~~a~~ir~~  257 (269)
T COG2912         190 ALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCY----------HVALEDLSYFVEHCPDDPIAEMIRAQ  257 (269)
T ss_pred             HHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCc----------hhhHHHHHHHHHhCCCchHHHHHHHH
Confidence            455566889999999999999999999999999999999999          99999999999999999987654443

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=91.53  E-value=0.78  Score=39.11  Aligned_cols=57  Identities=30%  Similarity=0.314  Sum_probs=47.5

Q ss_pred             HHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHH
Q 030634           35 LTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQR  112 (174)
Q Consensus        35 ~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~k  112 (174)
                      +...+..+...|.+          .+|++.-++++.+||-+...+..|-.+|..+|           +--.|+.+|.+
T Consensus       282 lgkva~~yle~g~~----------neAi~l~qr~ltldpL~e~~nk~lm~~la~~g-----------D~is~~khyer  338 (361)
T COG3947         282 LGKVARAYLEAGKP----------NEAIQLHQRALTLDPLSEQDNKGLMASLATLG-----------DEISAIKHYER  338 (361)
T ss_pred             HHHHHHHHHHcCCh----------HHHHHHHHHHhhcChhhhHHHHHHHHHHHHhc-----------cchhhhhHHHH
Confidence            34455667777777          99999999999999999999999999999999           66666666665

>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=91.48  E-value=2.6  Score=37.30  Aligned_cols=97  Identities=13%  Similarity=0.034  Sum_probs=73.1

Q ss_pred             hhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhC
Q 030634           10 RLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSC   89 (174)
Q Consensus        10 ~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~l   89 (174)
                      .+..+++-++....++..+|++..+|+.+..++...+..        .+..-+...++++++||.+..+|...=.+....
T Consensus        87 k~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~--------~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~  158 (421)
T KOG0529|consen   87 KQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHS--------DWNTELQLCEKALKQDPRNFHAWHYRRFVVEQA  158 (421)
T ss_pred             HHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCc--------hHHHHHHHHHHHHhcCcccccchHHHHHHHHHH
Confidence            344678888999999999999999999999999876654        237889999999999999999986655555433


Q ss_pred             CCCccchhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634           90 GFLTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (174)
Q Consensus        90 G~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~  121 (174)
                      .+-       -....+=+++..+++.-|+.|-
T Consensus       159 ~~~-------~~~~~~El~ftt~~I~~nfSNY  183 (421)
T KOG0529|consen  159 ERS-------RNLEKEELEFTTKLINDNFSNY  183 (421)
T ss_pred             hcc-------cccchhHHHHHHHHHhccchhh
Confidence            200       0134566777777777777665

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=91.47  E-value=8.8  Score=34.25  Aligned_cols=103  Identities=20%  Similarity=0.085  Sum_probs=80.2

Q ss_pred             HHhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchh---h----------------------------hh
Q 030634            8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSD---S----------------------------KK   56 (174)
Q Consensus         8 ~~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~---~----------------------------~~   56 (174)
                      ..|+|..+.|+.+++.+..+.|.-+-++...=......|+++....   .                            ..
T Consensus       164 Aqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~lda  243 (531)
T COG3898         164 AQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDA  243 (531)
T ss_pred             HHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcC
Confidence            4688899999999999999999988777666556666666643110   0                            11


Q ss_pred             hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634           57 IINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (174)
Q Consensus        57 ~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~  121 (174)
                      ....|...-.+++++.|+...+-..-+.+|...|           +..++-.+++.+.+.+|.-.
T Consensus       244 dp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~-----------~~rKg~~ilE~aWK~ePHP~  297 (531)
T COG3898         244 DPASARDDALEANKLAPDLVPAAVVAARALFRDG-----------NLRKGSKILETAWKAEPHPD  297 (531)
T ss_pred             ChHHHHHHHHHHhhcCCccchHHHHHHHHHHhcc-----------chhhhhhHHHHHHhcCCChH
Confidence            2466777778889999999998888899999988           99999999999999988654

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=90.65  E-value=1.9  Score=41.73  Aligned_cols=84  Identities=19%  Similarity=0.163  Sum_probs=50.2

Q ss_pred             hhHHHHHHHHHHH----------HHhCCCC----------HHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHH
Q 030634           56 KIINEAISKFEEA----------LVIDPAK----------HYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVD  115 (174)
Q Consensus        56 ~~~~eAi~~lekA----------l~ldP~~----------~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~  115 (174)
                      +.++.|++.|+|+          |.-+|..          +..|--.|.-+...|           +.+.|+.+|..|-.
T Consensus       872 ~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~G-----------emdaAl~~Y~~A~D  940 (1416)
T KOG3617|consen  872 RDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVG-----------EMDAALSFYSSAKD  940 (1416)
T ss_pred             ccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhccc-----------chHHHHHHHHHhhh
Confidence            3459999999886          4446653          333444566666766           88999999988643


Q ss_pred             hCCCCH------HHHHHHhcCC--CChHHHHHHHHHHHhcccc
Q 030634          116 EEPTNE------LYQKSLEVST--KAPELHMELHKHGINQQTL  150 (174)
Q Consensus       116 l~P~~~------~y~~Al~l~~--~~~~~~~~l~~~~~~~~~~  150 (174)
                      .-.--.      ...+|-++..  .+-.+-+.|+..|.++|-+
T Consensus       941 ~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v  983 (1416)
T KOG3617|consen  941 YFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDV  983 (1416)
T ss_pred             hhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHH
Confidence            221110      2234444433  3334666777777777766

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=90.54  E-value=0.3  Score=42.04  Aligned_cols=61  Identities=13%  Similarity=0.147  Sum_probs=51.0

Q ss_pred             hhhHHHHHHHHHHHHhhCCCCHHHHHH-HHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHH
Q 030634           11 LLLSEHNRKTAEANYAKDPLDADNLTR-WGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWS   81 (174)
Q Consensus        11 ~~~~~eAl~~~~~al~~~P~~~~a~~~-lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~   81 (174)
                      .+.|.+--..|.+++..+|.+++.|.. -+.-+...+++          +-+...|.++|+.||++|..|+.
T Consensus       120 ~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani----------~s~Ra~f~~glR~N~~~p~iw~e  181 (435)
T COG5191         120 KKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANI----------ESSRAMFLKGLRMNSRSPRIWIE  181 (435)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccH----------HHHHHHHHhhhccCCCCchHHHH
Confidence            346677778889999999999999987 44566667777          99999999999999999998854

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=90.49  E-value=3.3  Score=34.08  Aligned_cols=53  Identities=19%  Similarity=0.206  Sum_probs=49.8

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634           58 INEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (174)
Q Consensus        58 ~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~  121 (174)
                      +.+||...+.-++-+|.+......|=..|...|           ++++|..-++-+-+++|++.
T Consensus        17 L~dai~~a~~qVkakPtda~~RhflfqLlcvaG-----------dw~kAl~Ql~l~a~l~p~~t   69 (273)
T COG4455          17 LQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAG-----------DWEKALAQLNLAATLSPQDT   69 (273)
T ss_pred             HHHHHHHHHHHHhcCCccccchhHHHHHHhhcc-----------hHHHHHHHHHHHhhcCcccc
Confidence            499999999999999999999988888999999           99999999999999999887

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.47  E-value=4.6  Score=33.84  Aligned_cols=94  Identities=15%  Similarity=0.067  Sum_probs=52.6

Q ss_pred             HhhhhHHHHHHHHHHHHhhCCCCHH------HHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCH---HHH
Q 030634            9 DRLLLSEHNRKTAEANYAKDPLDAD------NLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKH---YTL   79 (174)
Q Consensus         9 ~~~~~~~eAl~~~~~al~~~P~~~~------a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~---~a~   79 (174)
                      .--..|++|-..+.+|.+-..++..      ++-..|....++..+          .|+...+++|..+.-.+.   .+-
T Consensus        42 RnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~kl----------sEvvdl~eKAs~lY~E~GspdtAA  111 (308)
T KOG1585|consen   42 RNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKL----------SEVVDLYEKASELYVECGSPDTAA  111 (308)
T ss_pred             HhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHh----------HHHHHHHHHHHHHHHHhCCcchHH
Confidence            3344677777777777655444432      223333444444444          888888888877632221   122


Q ss_pred             HHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634           80 WSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (174)
Q Consensus        80 ~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~  121 (174)
                      ..|+.+--.+.         ..+.++|++.|++++.+=-++.
T Consensus       112 maleKAak~le---------nv~Pd~AlqlYqralavve~~d  144 (308)
T KOG1585|consen  112 MALEKAAKALE---------NVKPDDALQLYQRALAVVEEDD  144 (308)
T ss_pred             HHHHHHHHHhh---------cCCHHHHHHHHHHHHHHHhccc
Confidence            33333322222         2378889999999887755554

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=90.32  E-value=0.5  Score=27.68  Aligned_cols=29  Identities=41%  Similarity=0.547  Sum_probs=26.1

Q ss_pred             HHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHh
Q 030634           33 DNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVI   71 (174)
Q Consensus        33 ~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~l   71 (174)
                      +++..||.+-+..++|          ++|+.-|+++|++
T Consensus         2 dv~~~Lgeisle~e~f----------~qA~~D~~~aL~i   30 (38)
T PF10516_consen    2 DVYDLLGEISLENENF----------EQAIEDYEKALEI   30 (38)
T ss_pred             cHHHHHHHHHHHhccH----------HHHHHHHHHHHHH
Confidence            5788899999999998          9999999999986

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=90.29  E-value=0.56  Score=27.48  Aligned_cols=30  Identities=20%  Similarity=0.296  Sum_probs=24.6

Q ss_pred             HHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhC
Q 030634           77 YTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEE  117 (174)
Q Consensus        77 ~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~  117 (174)
                      +++..||.+-...+           +|++|+.-|+++|++.
T Consensus         2 dv~~~Lgeisle~e-----------~f~qA~~D~~~aL~i~   31 (38)
T PF10516_consen    2 DVYDLLGEISLENE-----------NFEQAIEDYEKALEIQ   31 (38)
T ss_pred             cHHHHHHHHHHHhc-----------cHHHHHHHHHHHHHHH
Confidence            46777888888866           9999999999998863

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=90.23  E-value=1.3  Score=33.61  Aligned_cols=59  Identities=12%  Similarity=0.110  Sum_probs=50.5

Q ss_pred             hHHHHHHHHHHHHh-hCCC-CHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHH
Q 030634           13 LSEHNRKTAEANYA-KDPL-DADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWS   81 (174)
Q Consensus        13 ~~~eAl~~~~~al~-~~P~-~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~   81 (174)
                      .-.+.+..++..++ -+|. .-+..+.|+..+..+++|          ++++...+..++.+|++..+.-.
T Consensus        50 dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY----------~~s~~yvd~ll~~e~~n~Qa~~L  110 (149)
T KOG3364|consen   50 DVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEY----------SKSLRYVDALLETEPNNRQALEL  110 (149)
T ss_pred             HHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhH----------HHHHHHHHHHHhhCCCcHHHHHH
Confidence            45677888888886 5565 578999999999999999          99999999999999999997543

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=90.09  E-value=2.9  Score=39.21  Aligned_cols=92  Identities=16%  Similarity=0.195  Sum_probs=73.0

Q ss_pred             HhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHh--CCCCHHHHHH-HHHH
Q 030634            9 DRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVI--DPAKHYTLWS-LGNA   85 (174)
Q Consensus         9 ~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~l--dP~~~~a~~~-LG~a   85 (174)
                      ++.|=|+.....|.+.+++.--.|++-.|.|..+.+..-|          ++|.+.|++.+.+  -|.-.++|.. |-..
T Consensus       488 Es~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yf----------eesFk~YErgI~LFk~p~v~diW~tYLtkf  557 (835)
T KOG2047|consen  488 ESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYF----------EESFKAYERGISLFKWPNVYDIWNTYLTKF  557 (835)
T ss_pred             HHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHH----------HHHHHHHHcCCccCCCccHHHHHHHHHHHH
Confidence            4667788888999999999999999999999999887667          9999999999998  4566677653 3332


Q ss_pred             HHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCC
Q 030634           86 HTSCGFLTADLSEAKGDFDKASECFQRAVDEEPT  119 (174)
Q Consensus        86 ~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~  119 (174)
                      -...|         -...+.|.+.|++||+.=|.
T Consensus       558 i~ryg---------g~klEraRdLFEqaL~~Cpp  582 (835)
T KOG2047|consen  558 IKRYG---------GTKLERARDLFEQALDGCPP  582 (835)
T ss_pred             HHHhc---------CCCHHHHHHHHHHHHhcCCH
Confidence            23333         23789999999999998773

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=90.07  E-value=4.5  Score=31.29  Aligned_cols=52  Identities=19%  Similarity=0.185  Sum_probs=48.8

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634           59 NEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (174)
Q Consensus        59 ~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~  121 (174)
                      +++...+...--+.|+.++.-..-|..+...|           ++.+|+..++...+-.|..+
T Consensus        27 ~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~-----------~w~dA~rlLr~l~~~~~~~p   78 (160)
T PF09613_consen   27 DDAEALLDALRVLRPEFPELDLFDGWLHIVRG-----------DWDDALRLLRELEERAPGFP   78 (160)
T ss_pred             HHHHHHHHHHHHhCCCchHHHHHHHHHHHHhC-----------CHHHHHHHHHHHhccCCCCh
Confidence            89999999999999999999999999999999           99999999999888888777

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=89.76  E-value=8.7  Score=36.21  Aligned_cols=92  Identities=13%  Similarity=0.059  Sum_probs=66.8

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCc
Q 030634           14 SEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLT   93 (174)
Q Consensus        14 ~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~~~   93 (174)
                      .++-.-+|++|++.-|.+..+|+..-..-...-+  ....+...++.--.+|++++..--+-|.+|......+..+|   
T Consensus        42 ~k~~~~lYERal~~lp~sykiW~~YL~~R~~~vk--~~~~T~~~~~~vn~c~er~lv~mHkmpRIwl~Ylq~l~~Q~---  116 (835)
T KOG2047|consen   42 DKQRNLLYERALKELPGSYKIWYDYLKARRAQVK--HLCPTDPAYESVNNCFERCLVFMHKMPRIWLDYLQFLIKQG---  116 (835)
T ss_pred             hHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHhh--ccCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcc---
Confidence            4455678999999999999999876644433322  22334556677788999999998899999999999999988   


Q ss_pred             cchhhhhcCHHHHHHHHHHHHHhCC
Q 030634           94 ADLSEAKGDFDKASECFQRAVDEEP  118 (174)
Q Consensus        94 ~~~~~a~~~~~~Ai~~~~kAl~l~P  118 (174)
                              +...-...|.+||.-=|
T Consensus       117 --------~iT~tR~tfdrALraLp  133 (835)
T KOG2047|consen  117 --------LITRTRRTFDRALRALP  133 (835)
T ss_pred             --------hHHHHHHHHHHHHHhCc
Confidence                    55555555555555444

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.12  E-value=12  Score=31.18  Aligned_cols=55  Identities=15%  Similarity=0.177  Sum_probs=41.2

Q ss_pred             hhHHHHHHHHHHHHHhCCCCHHH-------HHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634           56 KIINEAISKFEEALVIDPAKHYT-------LWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (174)
Q Consensus        56 ~~~~eAi~~lekAl~ldP~~~~a-------~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~  121 (174)
                      +++.+||.+|+++..-.-+++-.       ++.-|.|+..-+           +.-.+...+++-.+++|...
T Consensus       168 eqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~-----------D~v~a~~ALeky~~~dP~F~  229 (288)
T KOG1586|consen  168 EQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKA-----------DEVNAQRALEKYQELDPAFT  229 (288)
T ss_pred             HHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcc-----------cHHHHHHHHHHHHhcCCccc
Confidence            55699999999998877666543       345677777645           66667777777778999887

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=88.52  E-value=4.7  Score=40.90  Aligned_cols=96  Identities=15%  Similarity=0.212  Sum_probs=82.4

Q ss_pred             hHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCC
Q 030634           13 LSEHNRKTAEANYAKDPL--DADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCG   90 (174)
Q Consensus        13 ~~~eAl~~~~~al~~~P~--~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG   90 (174)
                      .-++|...+.+|+..-|.  +.+....-+..-++.|+.          +.+..+|+-.+.-+|+-.+.|.-+...=..+|
T Consensus      1579 e~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDa----------eRGRtlfEgll~ayPKRtDlW~VYid~eik~~ 1648 (1710)
T KOG1070|consen 1579 EAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDA----------ERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHG 1648 (1710)
T ss_pred             HHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCc----------hhhHHHHHHHHhhCccchhHHHHHHHHHHccC
Confidence            446788899999999999  888999999999999998          99999999999999999999998888888888


Q ss_pred             CCccchhhhhcCHHHHHHHHHHHHHhC--CCCH--HHHHHHhc
Q 030634           91 FLTADLSEAKGDFDKASECFQRAVDEE--PTNE--LYQKSLEV  129 (174)
Q Consensus        91 ~~~~~~~~a~~~~~~Ai~~~~kAl~l~--P~~~--~y~~Al~l  129 (174)
                                 +.+.+...|+|++.+.  |...  .|++-|+.
T Consensus      1649 -----------~~~~vR~lfeRvi~l~l~~kkmKfffKkwLey 1680 (1710)
T KOG1070|consen 1649 -----------DIKYVRDLFERVIELKLSIKKMKFFFKKWLEY 1680 (1710)
T ss_pred             -----------CHHHHHHHHHHHHhcCCChhHhHHHHHHHHHH
Confidence                       9999999999998765  3333  56666654

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=88.51  E-value=2.8  Score=38.49  Aligned_cols=74  Identities=12%  Similarity=0.207  Sum_probs=61.6

Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCccchhhhh
Q 030634           21 AEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAK  100 (174)
Q Consensus        21 ~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~~~~~~~~a~  100 (174)
                      .++-++.+|.|.++|+.|-.-+... -+          +++...||+.+...|..+.+|..-........          
T Consensus         9 ~~~rie~nP~di~sw~~lire~qt~-~~----------~~~R~~YEq~~~~FP~s~r~W~~yi~~El~sk----------   67 (656)
T KOG1914|consen    9 PRERIEENPYDIDSWSQLIREAQTQ-PI----------DKVRETYEQLVNVFPSSPRAWKLYIERELASK----------   67 (656)
T ss_pred             HHHHHhcCCccHHHHHHHHHHHccC-CH----------HHHHHHHHHHhccCCCCcHHHHHHHHHHHHhh----------
Confidence            3778899999999999887655433 34          99999999999999999999988777766655          


Q ss_pred             cCHHHHHHHHHHHHHh
Q 030634          101 GDFDKASECFQRAVDE  116 (174)
Q Consensus       101 ~~~~~Ai~~~~kAl~l  116 (174)
                       +|+.-...|.++|..
T Consensus        68 -dfe~VEkLF~RCLvk   82 (656)
T KOG1914|consen   68 -DFESVEKLFSRCLVK   82 (656)
T ss_pred             -hHHHHHHHHHHHHHH
Confidence             999999999998864

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=88.45  E-value=0.52  Score=24.81  Aligned_cols=26  Identities=19%  Similarity=0.106  Sum_probs=22.1

Q ss_pred             HHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHH
Q 030634           32 ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEE   67 (174)
Q Consensus        32 ~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lek   67 (174)
                      |.+.+.+|.++...|++          ++|...+++
T Consensus         1 ~~a~~~la~~~~~~G~~----------~eA~~~l~~   26 (26)
T PF07721_consen    1 PRARLALARALLAQGDP----------DEAERLLRR   26 (26)
T ss_pred             CHHHHHHHHHHHHcCCH----------HHHHHHHhC
Confidence            35678999999999999          999988763

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=88.44  E-value=3.4  Score=40.01  Aligned_cols=66  Identities=23%  Similarity=0.363  Sum_probs=50.8

Q ss_pred             CCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHH---------------------HHhCCCCHHHHHHHHHHHH
Q 030634           29 PLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEA---------------------LVIDPAKHYTLWSLGNAHT   87 (174)
Q Consensus        29 P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekA---------------------l~ldP~~~~a~~~LG~a~~   87 (174)
                      -.++..|.+||.-+-..|+.          +.|+..|..|                     |.....|-.|-|.||..|.
T Consensus       909 ~~d~~L~~WWgqYlES~Gem----------daAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YE  978 (1416)
T KOG3617|consen  909 KRDESLYSWWGQYLESVGEM----------DAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYE  978 (1416)
T ss_pred             ccchHHHHHHHHHHhcccch----------HHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhh
Confidence            45667888899888777777          7777777665                     3345667788899999999


Q ss_pred             hCCCCccchhhhhcCHHHHHHHHHHHHH
Q 030634           88 SCGFLTADLSEAKGDFDKASECFQRAVD  115 (174)
Q Consensus        88 ~lG~~~~~~~~a~~~~~~Ai~~~~kAl~  115 (174)
                      ..|           ++.+|+..|.+|-.
T Consensus       979 n~g-----------~v~~Av~FfTrAqa  995 (1416)
T KOG3617|consen  979 NDG-----------DVVKAVKFFTRAQA  995 (1416)
T ss_pred             hhH-----------HHHHHHHHHHHHHH
Confidence            988           99999998877643

>smart00386 HAT HAT (Half-A-TPR) repeats

Probab=88.26  E-value=1.4  Score=23.19  Aligned_cols=27  Identities=22%  Similarity=0.146  Sum_probs=23.8

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 030634           58 INEAISKFEEALVIDPAKHYTLWSLGN   84 (174)
Q Consensus        58 ~~eAi~~lekAl~ldP~~~~a~~~LG~   84 (174)
                      ++.|...|++++...|.++..|.....
T Consensus         3 ~~~~r~i~e~~l~~~~~~~~~W~~y~~   29 (33)
T smart00386        3 IERARKIYERALEKFPKSVELWLKYAE   29 (33)
T ss_pred             HHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence            489999999999999999999987654

Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.

>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]

Probab=87.24  E-value=0.52  Score=40.87  Aligned_cols=76  Identities=20%  Similarity=0.190  Sum_probs=62.7

Q ss_pred             HHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHH
Q 030634           34 NLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRA  113 (174)
Q Consensus        34 a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kA  113 (174)
                      ...+++.+-+.++.+          ..|+..-..+++.++....++|..|..+..+.           ++++|++.++.+
T Consensus       277 ~~~n~~~~~lk~~~~----------~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~-----------~~~~a~~~~~~a  335 (372)
T KOG0546|consen  277 IRRNLAAVGLKVKGR----------GGARFRTNEALRDERSKTKAHYRRGQAYKLLK-----------NYDEALEDLKKA  335 (372)
T ss_pred             cccchHHhcccccCC----------CcceeccccccccChhhCcHHHHHHhHHHhhh-----------chhhhHHHHHHh
Confidence            345566666666666          77777777778899999999999999999988           999999999999


Q ss_pred             HHhCCCCHHHHHHHhcC
Q 030634          114 VDEEPTNELYQKSLEVS  130 (174)
Q Consensus       114 l~l~P~~~~y~~Al~l~  130 (174)
                      ...+|++....+++...
T Consensus       336 ~~~~p~d~~i~~~~~~~  352 (372)
T KOG0546|consen  336 KQKAPNDKAIEEELENV  352 (372)
T ss_pred             hccCcchHHHHHHHHHh
Confidence            99999999777766443

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=87.18  E-value=15  Score=29.97  Aligned_cols=92  Identities=16%  Similarity=0.039  Sum_probs=64.0

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHhCCCC
Q 030634           14 SEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAK-HYTLWSLGNAHTSCGFL   92 (174)
Q Consensus        14 ~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~-~~a~~~LG~a~~~lG~~   92 (174)
                      ..+|++.++  ...+..++.+.+++|.++..-.-      ....+.+|...|++|.+..-.. ..+.+.+|.+|..-...
T Consensus        93 ~~~A~~~~~--~~a~~g~~~a~~~lg~~~~~G~g------v~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~  164 (292)
T COG0790          93 KTKAADWYR--CAAADGLAEALFNLGLMYANGRG------VPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQA  164 (292)
T ss_pred             HHHHHHHHH--HHhhcccHHHHHhHHHHHhcCCC------cccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhh
Confidence            677888888  55778899999999999876321      1234599999999999874444 46689999998773200


Q ss_pred             ccchhhhhcCHHHHHHHHHHHHHhC
Q 030634           93 TADLSEAKGDFDKASECFQRAVDEE  117 (174)
Q Consensus        93 ~~~~~~a~~~~~~Ai~~~~kAl~l~  117 (174)
                          .-...+..+|+..|+++-...
T Consensus       165 ----~~~~~~~~~A~~~~~~aa~~~  185 (292)
T COG0790         165 ----LAVAYDDKKALYLYRKAAELG  185 (292)
T ss_pred             ----hcccHHHHhHHHHHHHHHHhc
Confidence                000113457888888877665

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=86.88  E-value=6.3  Score=30.57  Aligned_cols=87  Identities=14%  Similarity=0.021  Sum_probs=59.5

Q ss_pred             hHHhhhhHHHHHHHHHHHHhhCCC---CHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhC--CCCHHHH--
Q 030634            7 DFDRLLLSEHNRKTAEANYAKDPL---DADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVID--PAKHYTL--   79 (174)
Q Consensus         7 ~~~~~~~~~eAl~~~~~al~~~P~---~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ld--P~~~~a~--   79 (174)
                      -|-+.|.+++|++.|.++.+....   -.+.+.++-.+.+..+++          ..+.....++-.+-  +.+.+..  
T Consensus        45 ~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~----------~~v~~~i~ka~~~~~~~~d~~~~nr  114 (177)
T PF10602_consen   45 HYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDW----------SHVEKYIEKAESLIEKGGDWERRNR  114 (177)
T ss_pred             HHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCH----------HHHHHHHHHHHHHHhccchHHHHHH
Confidence            477889999999999998876433   255667777777888887          67777777665542  2333322  


Q ss_pred             --HHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHH
Q 030634           80 --WSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAV  114 (174)
Q Consensus        80 --~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl  114 (174)
                        ..-|..+...+           +|.+|...|-.++
T Consensus       115 lk~~~gL~~l~~r-----------~f~~AA~~fl~~~  140 (177)
T PF10602_consen  115 LKVYEGLANLAQR-----------DFKEAAELFLDSL  140 (177)
T ss_pred             HHHHHHHHHHHhc-----------hHHHHHHHHHccC
Confidence              23344555555           9999999887764

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=86.41  E-value=8.2  Score=32.49  Aligned_cols=83  Identities=14%  Similarity=0.122  Sum_probs=63.2

Q ss_pred             hHHhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 030634            7 DFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAH   86 (174)
Q Consensus         7 ~~~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~   86 (174)
                      -+...++++.+....++.+..+|.+-.+|..+=.++...|+.          ..||..|++.-+.             .-
T Consensus       162 ~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~----------~~ai~~y~~l~~~-------------~~  218 (280)
T COG3629         162 ALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQ----------SAAIRAYRQLKKT-------------LA  218 (280)
T ss_pred             HHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCc----------hHHHHHHHHHHHH-------------hh
Confidence            355667899999999999999999999999999999999998          9999999887665             12


Q ss_pred             HhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634           87 TSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (174)
Q Consensus        87 ~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~  121 (174)
                      ..+|         .+--.++...|.+++...|.+.
T Consensus       219 edlg---------i~P~~~~~~~y~~~~~~~~~~~  244 (280)
T COG3629         219 EELG---------IDPAPELRALYEEILRQDPLDN  244 (280)
T ss_pred             hhcC---------CCccHHHHHHHHHHhccccccc
Confidence            2333         2234566666677666666544

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=86.22  E-value=8.6  Score=35.11  Aligned_cols=83  Identities=17%  Similarity=0.140  Sum_probs=59.3

Q ss_pred             hHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHH-hCCCCccchhhhhcCHHHHHHHHHHHHHhC---CCCH--------
Q 030634           57 IINEAISKFEEALVIDPAKH---YTLWSLGNAHT-SCGFLTADLSEAKGDFDKASECFQRAVDEE---PTNE--------  121 (174)
Q Consensus        57 ~~~eAi~~lekAl~ldP~~~---~a~~~LG~a~~-~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~---P~~~--------  121 (174)
                      .+.++|+|++..+...|.+-   ..+..||.+++ ...           +++-|..++++|..+.   |+..        
T Consensus        24 kIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~-----------N~elAksHLekA~~i~~~ip~fydvKf~a~S   92 (629)
T KOG2300|consen   24 KIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTK-----------NVELAKSHLEKAWLISKSIPSFYDVKFQAAS   92 (629)
T ss_pred             hHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhc-----------cHHHHHHHHHHHHHHHcccccHHhhhhHHHH
Confidence            34999999999998877753   45677887754 333           8899999999998764   3321        


Q ss_pred             ------------------HHHHHHhcCCCChHHHHHHHHHHHhcccc
Q 030634          122 ------------------LYQKSLEVSTKAPELHMELHKHGINQQTL  150 (174)
Q Consensus       122 ------------------~y~~Al~l~~~~~~~~~~l~~~~~~~~~~  150 (174)
                                        ..|+|+++....|--+.++.-.+...+..
T Consensus        93 lLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~i  139 (629)
T KOG2300|consen   93 LLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHII  139 (629)
T ss_pred             HHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhh
Confidence                              56888888888887666666666555554

>smart00386 HAT HAT (Half-A-TPR) repeats

Probab=85.65  E-value=2  Score=22.50  Aligned_cols=30  Identities=23%  Similarity=0.142  Sum_probs=25.7

Q ss_pred             hhHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 030634           12 LLSEHNRKTAEANYAKDPLDADNLTRWGEA   41 (174)
Q Consensus        12 ~~~~eAl~~~~~al~~~P~~~~a~~~lg~~   41 (174)
                      +.++.+...|++++...|.++..|......
T Consensus         1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~   30 (33)
T smart00386        1 GDIERARKIYERALEKFPKSVELWLKYAEF   30 (33)
T ss_pred             CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence            357889999999999999999999887654

Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.

>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []

Probab=85.30  E-value=2.1  Score=37.69  Aligned_cols=60  Identities=17%  Similarity=0.125  Sum_probs=45.1

Q ss_pred             hhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccc-h-hhhhhHHHHHHHHHHHHHh
Q 030634           10 RLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESV-S-DSKKIINEAISKFEEALVI   71 (174)
Q Consensus        10 ~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~-~-~~~~~~~eAi~~lekAl~l   71 (174)
                      .+..+..|++++++|..  -.+|+.|..+|.+++.+|+.... + +..+.|++|..++.+|-..
T Consensus       330 a~~l~~~Al~yL~kA~d--~ddPetWv~vAEa~I~LGNL~d~eS~eQe~~Y~eAE~iL~kAN~a  391 (404)
T PF12753_consen  330 AQELIKKALEYLKKAQD--EDDPETWVDVAEAMIDLGNLYDNESKEQEKAYKEAEKILKKANKA  391 (404)
T ss_dssp             HHHHHHHHHHHHHHHHH--S--TTHHHHHHHHHHHHHHH-SSHHH-HHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhhc--cCChhHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHHhhc
Confidence            34578889999999865  77899999999999999995432 2 2456789999999988653

In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=84.99  E-value=5.7  Score=31.92  Aligned_cols=55  Identities=18%  Similarity=0.187  Sum_probs=46.4

Q ss_pred             hHHhhhhHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHh
Q 030634            7 DFDRLLLSEHNRKTAEANYAKDPL------DADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVI   71 (174)
Q Consensus         7 ~~~~~~~~~eAl~~~~~al~~~P~------~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~l   71 (174)
                      +...+..+..|++.|.++++....      .....+.+|.+...+|++          ++|+..|.+++..
T Consensus       134 ~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~----------~eA~~~fs~vi~~  194 (214)
T PF09986_consen  134 EENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNY----------DEAKRWFSRVIGS  194 (214)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCH----------HHHHHHHHHHHcC
Confidence            445567889999999999986533      257889999999999999          9999999999874

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=84.97  E-value=18  Score=29.01  Aligned_cols=71  Identities=17%  Similarity=0.161  Sum_probs=55.0

Q ss_pred             HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCHHHHHHHhcCCCChHHH
Q 030634           59 NEAISKFEEALVI-DPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLEVSTKAPELH  137 (174)
Q Consensus        59 ~eAi~~lekAl~l-dP~~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~~y~~Al~l~~~~~~~~  137 (174)
                      ++|...|-++-.. .=++++..+.||..|.+.            +.++|+..+-++|++.+.+.         .-+|+.+
T Consensus       123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~kr------------D~~Kt~~ll~~~L~l~~~~~---------~~n~eil  181 (203)
T PF11207_consen  123 QEALRRFLQLEGTPELETAELQYALATYYTKR------------DPEKTIQLLLRALELSNPDD---------NFNPEIL  181 (203)
T ss_pred             HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHcc------------CHHHHHHHHHHHHHhcCCCC---------CCCHHHH
Confidence            7788777665432 225788899999988764            89999999999999887653         3368889


Q ss_pred             HHHHHHHHhcccc
Q 030634          138 MELHKHGINQQTL  150 (174)
Q Consensus       138 ~~l~~~~~~~~~~  150 (174)
                      ..|+.+++.++..
T Consensus       182 ~sLas~~~~~~~~  194 (203)
T PF11207_consen  182 KSLASIYQKLKNY  194 (203)
T ss_pred             HHHHHHHHHhcch
Confidence            9999999888764

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=84.60  E-value=13  Score=26.92  Aligned_cols=112  Identities=19%  Similarity=0.161  Sum_probs=65.6

Q ss_pred             HHhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHH-HHHhCCCCHH-------HH
Q 030634            8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEE-ALVIDPAKHY-------TL   79 (174)
Q Consensus         8 ~~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lek-Al~ldP~~~~-------a~   79 (174)
                      |...+.....+..++..+..++.++..+..+..++...++           .+.+..++. .-..|++..-       -|
T Consensus        17 ~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~~-----------~~ll~~l~~~~~~yd~~~~~~~c~~~~l~   85 (140)
T smart00299       17 FEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYDP-----------QKEIERLDNKSNHYDIEKVGKLCEKAKLY   85 (140)
T ss_pred             HHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHCH-----------HHHHHHHHhccccCCHHHHHHHHHHcCcH
Confidence            4445678899999999999999999999999999987644           455555552 1111111100       01


Q ss_pred             HHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCHHHHHHHhcC--CCChHHHHHHHHHHHhc
Q 030634           80 WSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLEVS--TKAPELHMELHKHGINQ  147 (174)
Q Consensus        80 ~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~~y~~Al~l~--~~~~~~~~~l~~~~~~~  147 (174)
                      -....+|...|           ++++|+..+-+-    +++  +..|++..  ...++.|..++...+..
T Consensus        86 ~~~~~l~~k~~-----------~~~~Al~~~l~~----~~d--~~~a~~~~~~~~~~~lw~~~~~~~l~~  138 (140)
T smart00299       86 EEAVELYKKDG-----------NFKDAIVTLIEH----LGN--YEKAIEYFVKQNNPELWAEVLKALLDK  138 (140)
T ss_pred             HHHHHHHHhhc-----------CHHHHHHHHHHc----ccC--HHHHHHHHHhCCCHHHHHHHHHHHHcc
Confidence            12222333444           777777765542    222  22333222  34788888888766543

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=84.57  E-value=5.9  Score=29.60  Aligned_cols=54  Identities=17%  Similarity=0.085  Sum_probs=40.2

Q ss_pred             hHHhhhhHHHHHHHHHHHHh-------hCCCCHH----HHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHH
Q 030634            7 DFDRLLLSEHNRKTAEANYA-------KDPLDAD----NLTRWGEALLELSQFESVSDSKKIINEAISKFEEALV   70 (174)
Q Consensus         7 ~~~~~~~~~eAl~~~~~al~-------~~P~~~~----a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~   70 (174)
                      -+-.+|+|++++..+.+++.       ++.+.-.    +.++.|.++..+|+.          ++|+..|+.+-+
T Consensus        64 A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~----------~eA~~~fr~agE  128 (144)
T PF12968_consen   64 ALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRK----------EEALKEFRMAGE  128 (144)
T ss_dssp             HHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-H----------HHHHHHHHHHHH
T ss_pred             HHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCCh----------HHHHHHHHHHHH
Confidence            45678999999999888886       4544433    446778888888888          999999998865

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=84.28  E-value=14  Score=39.31  Aligned_cols=142  Identities=11%  Similarity=-0.031  Sum_probs=96.5

Q ss_pred             CCChhhHHhhhhHHHHHHHHHHHHh---hC----CCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCC
Q 030634            2 EFSQSDFDRLLLSEHNRKTAEANYA---KD----PLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPA   74 (174)
Q Consensus         2 ~~~~~~~~~~~~~~eAl~~~~~al~---~~----P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~   74 (174)
                      +++|.+|.    ..|=+-..++++.   .+    ..-.++|...|.+-...|++          +.|-..+-+|.+..  
T Consensus      1637 ~~tq~s~~----~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~----------q~A~nall~A~e~r-- 1700 (2382)
T KOG0890|consen 1637 ERTQPSFR----IKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHL----------QRAQNALLNAKESR-- 1700 (2382)
T ss_pred             HHhchhHH----HHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccH----------HHHHHHHHhhhhcc--
Confidence            44555555    4444444444433   23    33567888888888778887          88888888888877  


Q ss_pred             CHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCC-H--------------------------------
Q 030634           75 KHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN-E--------------------------------  121 (174)
Q Consensus        75 ~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~-~--------------------------------  121 (174)
                      -+.++...+..+-..|           +-..|+..+++.++++-.+ .                                
T Consensus      1701 ~~~i~~E~AK~lW~~g-----------d~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~ 1769 (2382)
T KOG0890|consen 1701 LPEIVLERAKLLWQTG-----------DELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNF 1769 (2382)
T ss_pred             cchHHHHHHHHHHhhc-----------cHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcch
Confidence            6778888888888888           8889999999988765333 1                                


Q ss_pred             -------HHHHHHhcCCCChHHHHHHHHHHHh----ccccCCC--Cchhh---HHHHHHHHHhhh
Q 030634          122 -------LYQKSLEVSTKAPELHMELHKHGIN----QQTLGGG--SSASS---AQVNFCICVHQM  170 (174)
Q Consensus       122 -------~y~~Al~l~~~~~~~~~~l~~~~~~----~~~~~~~--~~~~~---~~~~~~~~~~~~  170 (174)
                             .|..+.++.|+-..-|+.+|.-+-.    +..-+-|  -+.++   +.|+|+..+|-+
T Consensus      1770 ~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy~kll~~~~~~~~E~~g~~~~~l~~~~~~~~sl~yg 1834 (2382)
T KOG0890|consen 1770 ESKDILKYYHDAKAILPEWEDKHYHLGKYYDKLLEDYKSNKMEKSGRVLSLLKAIYFFGRALYYG 1834 (2382)
T ss_pred             hHHHHHHHHHHHHHHcccccCceeeHHHHHHHHhhhhhcccccccccHHHHHHHHHHHHHHHHhc
Confidence                   7888999999888877777722222    2111222  23444   688889888865

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=84.07  E-value=15  Score=30.36  Aligned_cols=101  Identities=18%  Similarity=0.061  Sum_probs=61.4

Q ss_pred             hhhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcCcccchhhhh-hHHHHHHHHHHHHHh-------CCCCH----
Q 030634           10 RLLLSEHNRKTAEANYAKD-PLDADNLTRWGEALLELSQFESVSDSKK-IINEAISKFEEALVI-------DPAKH----   76 (174)
Q Consensus        10 ~~~~~~eAl~~~~~al~~~-P~~~~a~~~lg~~l~~~g~~~~~~~~~~-~~~eAi~~lekAl~l-------dP~~~----   76 (174)
                      ++|+++-|.-.+.++-... ..+|+....++.+++..|.-   .-..+ .+++|+.-+++|.++       +...+    
T Consensus         5 ~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~---l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~e   81 (278)
T PF08631_consen    5 KQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKS---LLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSE   81 (278)
T ss_pred             hhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHH---HHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHH
Confidence            4677888888888887765 55666655666655554442   11122 447888877777766       22222    


Q ss_pred             ---HHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634           77 ---YTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (174)
Q Consensus        77 ---~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~  121 (174)
                         .++..|+.+|...+        .....++|....+.+-..-|+.+
T Consensus        82 lr~~iL~~La~~~l~~~--------~~~~~~ka~~~l~~l~~e~~~~~  121 (278)
T PF08631_consen   82 LRLSILRLLANAYLEWD--------TYESVEKALNALRLLESEYGNKP  121 (278)
T ss_pred             HHHHHHHHHHHHHHcCC--------ChHHHHHHHHHHHHHHHhCCCCc
Confidence               24567788887766        11245667776666666667655

It is also involved in sporulation [].

>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised

Probab=84.04  E-value=6.9  Score=30.33  Aligned_cols=55  Identities=22%  Similarity=0.197  Sum_probs=47.4

Q ss_pred             hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634           55 KKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (174)
Q Consensus        55 ~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~  121 (174)
                      ....+..++..++.++..| ++..+.+++.++...|           +.++|....+++..+-|.+.
T Consensus       124 ~~~l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G-----------~~~eA~~~~~~~~~lyP~~~  178 (193)
T PF11846_consen  124 PEMLEAYIEWAERLLRRRP-DPNVYQRYALALALLG-----------DPEEARQWLARARRLYPADE  178 (193)
T ss_pred             HHHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhCCcHH
Confidence            4455777888889998888 7888899999999999           99999999999999999443

This domain is found in bacteria. This presumed domain is about 200 amino acids in length.

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=83.86  E-value=9.5  Score=31.99  Aligned_cols=95  Identities=15%  Similarity=0.107  Sum_probs=52.2

Q ss_pred             hhHHhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhh---------hHHHHHHHHHHHHHhCCCCH
Q 030634            6 SDFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKK---------IINEAISKFEEALVIDPAKH   76 (174)
Q Consensus         6 ~~~~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~---------~~~eAi~~lekAl~ldP~~~   76 (174)
                      |-|+--..+++|.-.+++. +.-|.-.+.+..-...|.+.|..+.+..+.+         ..++|+..|++++.+--.+.
T Consensus        66 slfhAAKayEqaamLake~-~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~d  144 (308)
T KOG1585|consen   66 SLFHAAKAYEQAAMLAKEL-SKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDD  144 (308)
T ss_pred             cHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccc
Confidence            3344444455544333332 2334444444455556666666655443321         25899999999887744443


Q ss_pred             HH------HHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHH
Q 030634           77 YT------LWSLGNAHTSCGFLTADLSEAKGDFDKASECFQR  112 (174)
Q Consensus        77 ~a------~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~k  112 (174)
                      ..      +-..+++|..+.           .|++|...+.|
T Consensus       145 r~~ma~el~gk~sr~lVrl~-----------kf~Eaa~a~lK  175 (308)
T KOG1585|consen  145 RDQMAFELYGKCSRVLVRLE-----------KFTEAATAFLK  175 (308)
T ss_pred             hHHHHHHHHHHhhhHhhhhH-----------HhhHHHHHHHH
Confidence            32      234556666665           67776666665

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=83.33  E-value=1.4  Score=40.51  Aligned_cols=54  Identities=20%  Similarity=0.110  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHH
Q 030634           14 SEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHY   77 (174)
Q Consensus        14 ~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~   77 (174)
                      --.|++.+-.|++++|..-.+|++++.++.+++++          .+|+.+...+....|.+..
T Consensus       427 ~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~----------~eal~~~~alq~~~Ptd~a  480 (758)
T KOG1310|consen  427 SYLALRDCHVALRLNPSIQKAHFRLARALNELTRY----------LEALSCHWALQMSFPTDVA  480 (758)
T ss_pred             HHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhH----------HHhhhhHHHHhhcCchhhh
Confidence            34688899999999999999999999999999999          9999998888888886554

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=82.89  E-value=12  Score=34.21  Aligned_cols=90  Identities=13%  Similarity=0.064  Sum_probs=60.1

Q ss_pred             hHHHHHHHHHHHHh-----hCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 030634           13 LSEHNRKTAEANYA-----KDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT   87 (174)
Q Consensus        13 ~~~eAl~~~~~al~-----~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~   87 (174)
                      ..+.|+..++.+.+     ..-.++.+.+.+|.+|....-....     ..+.|+..|.++-++  .++++.+.+|.++.
T Consensus       264 d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~-----d~~~A~~~~~~aA~~--g~~~a~~~lg~~~~  336 (552)
T KOG1550|consen  264 DLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKI-----DYEKALKLYTKAAEL--GNPDAQYLLGVLYE  336 (552)
T ss_pred             cHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccc-----cHHHHHHHHHHHHhc--CCchHHHHHHHHHH
Confidence            45666666666655     1122677889999999875432111     348899999998876  45667789999887


Q ss_pred             hCCCCccchhhhhcCHHHHHHHHHHHHHhC
Q 030634           88 SCGFLTADLSEAKGDFDKASECFQRAVDEE  117 (174)
Q Consensus        88 ~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~  117 (174)
                      ...        ...++..|.++|..|.+.-
T Consensus       337 ~g~--------~~~d~~~A~~yy~~Aa~~G  358 (552)
T KOG1550|consen  337 TGT--------KERDYRRAFEYYSLAAKAG  358 (552)
T ss_pred             cCC--------ccccHHHHHHHHHHHHHcC
Confidence            632        1136778888888877543

>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]

Probab=82.41  E-value=27  Score=30.69  Aligned_cols=27  Identities=15%  Similarity=-0.041  Sum_probs=22.0

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 030634           14 SEHNRKTAEANYAKDPLDADNLTRWGE   40 (174)
Q Consensus        14 ~~eAl~~~~~al~~~P~~~~a~~~lg~   40 (174)
                      -.+-++.+..|++++|..+.++..++.
T Consensus       200 p~~RI~~A~~ALeIN~eCA~AyvLLAE  226 (556)
T KOG3807|consen  200 PPARIKAAYQALEINNECATAYVLLAE  226 (556)
T ss_pred             cHHHHHHHHHHHhcCchhhhHHHhhhh
Confidence            345577888999999999998888775

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=82.23  E-value=10  Score=34.07  Aligned_cols=59  Identities=10%  Similarity=0.098  Sum_probs=50.1

Q ss_pred             HHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHH
Q 030634           34 NLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRA  113 (174)
Q Consensus        34 a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kA  113 (174)
                      +-..+..||+.+++.          +-|+.+-.+.|-++|..+.-|..-+.|+..+.           +|.+|..-+--|
T Consensus       230 Ietklv~CYL~~rkp----------dlALnh~hrsI~lnP~~frnHLrqAavfR~Le-----------Ry~eAarSamia  288 (569)
T PF15015_consen  230 IETKLVTCYLRMRKP----------DLALNHSHRSINLNPSYFRNHLRQAAVFRRLE-----------RYSEAARSAMIA  288 (569)
T ss_pred             HHHHHHHhhhhcCCC----------chHHHHHhhhhhcCcchhhHHHHHHHHHHHHH-----------HHHHHHHHHHHH
Confidence            456788899999999          99999999999999999999999999998876           787776644433

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=82.09  E-value=10  Score=32.92  Aligned_cols=103  Identities=17%  Similarity=-0.026  Sum_probs=64.2

Q ss_pred             HhhhhHHHHHHHHHHHHhhCCC-CHHH-HHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCC-----CHHHHHH
Q 030634            9 DRLLLSEHNRKTAEANYAKDPL-DADN-LTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPA-----KHYTLWS   81 (174)
Q Consensus         9 ~~~~~~~eAl~~~~~al~~~P~-~~~a-~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~-----~~~a~~~   81 (174)
                      .|.|-+.-|++.++-.+.+||. ||-. ++.+-..-+..+++          +--+..++........     -|..-|.
T Consensus       114 ~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y----------~~Li~~~~~~~~~~~~~~~~~lPn~a~S  183 (360)
T PF04910_consen  114 GRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQY----------QWLIDFSESPLAKCYRNWLSLLPNFAFS  183 (360)
T ss_pred             HhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCH----------HHHHHHHHhHhhhhhhhhhhhCccHHHH
Confidence            4667899999999999999999 8753 34444444556666          4444444443332111     2355677


Q ss_pred             HHHHHHhCCCC----ccchhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634           82 LGNAHTSCGFL----TADLSEAKGDFDKASECFQRAVDEEPTNE  121 (174)
Q Consensus        82 LG~a~~~lG~~----~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~  121 (174)
                      ++.++..++.-    ........++.++|-..+++|+..-|.-.
T Consensus       184 ~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~vl  227 (360)
T PF04910_consen  184 IALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWVL  227 (360)
T ss_pred             HHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHHH
Confidence            78888887711    00111112234889999999988888644

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A

Probab=81.79  E-value=5  Score=30.30  Aligned_cols=51  Identities=18%  Similarity=0.179  Sum_probs=41.6

Q ss_pred             CCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCC
Q 030634           30 LDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCG   90 (174)
Q Consensus        30 ~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG   90 (174)
                      ..++.....+...+..|++          .-|.++...++..||+|..+....+.+|..+|
T Consensus        68 GG~d~vl~~A~~~~~~gd~----------~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg  118 (141)
T PF14863_consen   68 GGADKVLERAQAALAAGDY----------QWAAELLDHLVFADPDNEEARQLKADALEQLG  118 (141)
T ss_dssp             TCHHHHHHHHHHHHHCT-H----------HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence            5566677777777777777          99999999999999999999999999999887

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=81.65  E-value=4.9  Score=36.27  Aligned_cols=61  Identities=18%  Similarity=0.137  Sum_probs=48.5

Q ss_pred             hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH----HHHHHHhcC
Q 030634           55 KKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE----LYQKSLEVS  130 (174)
Q Consensus        55 ~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~----~y~~Al~l~  130 (174)
                      .|++.++.-.-.-..+++| ++.++-.+|.+++...           +|++|..++.+   +-|++.    .-.||+.++
T Consensus       475 qgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k-----------~Y~eA~~~l~~---LP~n~~~~dskvqKAl~lC  539 (549)
T PF07079_consen  475 QGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENK-----------RYQEAWEYLQK---LPPNERMRDSKVQKALALC  539 (549)
T ss_pred             cccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHh-----------hHHHHHHHHHh---CCCchhhHHHHHHHHHHHH
Confidence            3556888888888899999 9999999999999976           99999999886   455444    445666554

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB)

Probab=81.50  E-value=5.4  Score=34.24  Aligned_cols=47  Identities=21%  Similarity=0.132  Sum_probs=42.5

Q ss_pred             hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHH
Q 030634           55 KKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQR  112 (174)
Q Consensus        55 ~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~k  112 (174)
                      .+.+-+|+.++|.++..+|.|+.....|-.+|..+|           -.+.|...|..
T Consensus       196 ~~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG-----------~~~~A~~~~~~  242 (365)
T PF09797_consen  196 SEYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLG-----------AGSLALEHYES  242 (365)
T ss_pred             HHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcC-----------CHHHHHHHHHh
Confidence            455689999999999999999999999999999999           88889888864

The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=81.38  E-value=3.1  Score=25.10  Aligned_cols=26  Identities=19%  Similarity=0.256  Sum_probs=23.7

Q ss_pred             HHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHH
Q 030634           35 LTRWGEALLELSQFESVSDSKKIINEAISKFEEALV   70 (174)
Q Consensus        35 ~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~   70 (174)
                      .+.++.+|+.+|+.          +.|...+++++.
T Consensus         2 kLdLA~ayie~Gd~----------e~Ar~lL~evl~   27 (44)
T TIGR03504         2 KLDLARAYIEMGDL----------EGARELLEEVIE   27 (44)
T ss_pred             chHHHHHHHHcCCh----------HHHHHHHHHHHH
Confidence            46799999999999          999999999995

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking

Probab=81.06  E-value=6  Score=25.55  Aligned_cols=14  Identities=29%  Similarity=0.418  Sum_probs=9.2

Q ss_pred             HHHHHHHHHHHHhC
Q 030634           59 NEAISKFEEALVID   72 (174)
Q Consensus        59 ~eAi~~lekAl~ld   72 (174)
                      +.|+....+|++.|
T Consensus         3 ~~A~~~~~~Av~~D   16 (69)
T PF04212_consen    3 DKAIELIKKAVEAD   16 (69)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            66777777766643

; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=80.31  E-value=13  Score=34.19  Aligned_cols=110  Identities=14%  Similarity=0.037  Sum_probs=65.9

Q ss_pred             hhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHH
Q 030634           12 LLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPA----KHYTLWSLGNAHT   87 (174)
Q Consensus        12 ~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~----~~~a~~~LG~a~~   87 (174)
                      |....|-+....+++..|.+|.-....+.+...+|.|+..+...+..+.++..-.+++++--.    -......+..+-.
T Consensus       303 gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~  382 (831)
T PRK15180        303 GDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEM  382 (831)
T ss_pred             cCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHH
Confidence            345566677778888999999999999999999999955443333333333322222222110    0111111222222


Q ss_pred             hCC-C--------CccchhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634           88 SCG-F--------LTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (174)
Q Consensus        88 ~lG-~--------~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~  121 (174)
                      .+| +        ..+..-.+.+.+++|..++++.+.++|.-.
T Consensus       383 ~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~  425 (831)
T PRK15180        383 MLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQ  425 (831)
T ss_pred             HhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhc
Confidence            233 1        113344567789999999999999998654

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=80.29  E-value=6.8  Score=23.57  Aligned_cols=31  Identities=23%  Similarity=0.362  Sum_probs=26.1

Q ss_pred             HHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634           79 LWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (174)
Q Consensus        79 ~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~  121 (174)
                      .++|+.+|..+|           +++.|.+.+++.++ .++.+
T Consensus         2 kLdLA~ayie~G-----------d~e~Ar~lL~evl~-~~~~~   32 (44)
T TIGR03504         2 KLDLARAYIEMG-----------DLEGARELLEEVIE-EGDEA   32 (44)
T ss_pred             chHHHHHHHHcC-----------ChHHHHHHHHHHHH-cCCHH
Confidence            368999999999           99999999999994 55444

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	174
1zu2_A	158	Solution Nmr Structure Of The Plant Tom20 Mitochond		1e-44
1na0_A	125	Design Of Stable Alpha-Helical Arrays From An Ideal		7e-05
2fo7_A	136	Crystal Structure Of An 8 Repeat Consensus Tpr Supe		6e-04
1na3_A	91	Design Of Stable Alpha-Helical Arrays From An Ideal		7e-04

>pdb|1ZU2|A Chain A, Solution Nmr Structure Of The Plant Tom20 Mitochondrial Import Receptor From Arabidopsis Thaliana Length = 158

Iteration: 1
 Score =  175 bits (444), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 86/151 (56%), Positives = 113/151 (74%), Gaps = 6/151 (3%)
Query: 4   SQSDFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAIS 63
           ++++FDR+LL E  R+ AE  Y  +PLDADNLTRWG  LLELSQF S+SD+K++I EAI+
Sbjct: 8   TETEFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAIT 67
Query: 64  KFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELY 123
           KFEEAL+IDP K   +W +GNA+TS  FLT D +EAK +FD A++ FQ+AVDE+P N  Y
Sbjct: 68  KFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHY 127
Query: 124 QKSLEVSTKAPELHMELHKHGINQQTLGGGS 154
            KSLE++ KAP+LH E +K G+      GGS
Sbjct: 128 LKSLEMTAKAPQLHAEAYKQGL------GGS 152

>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125

Iteration: 1
 Score = 43.5 bits (101), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 32/121 (26%), Positives = 56/121 (46%), Gaps = 33/121 (27%)
Query: 3   FSQSDFDRLLLSEHNRKTAEANYAKDPLDADNLTRW---GEALLELSQFESVSDSKKIIN 59
           + Q D+D  +  E+ +K  E       LD +N   W   G A  +   ++          
Sbjct: 20  YKQGDYDEAI--EYYQKALE-------LDPNNAEAWYNLGNAYYKQGDYD---------- 60
Query: 60  EAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPT 119
           EAI  +++AL +DP      ++LGNA+             +GD+D+A E +Q+A++ +P 
Sbjct: 61  EAIEYYQKALELDPNNAEAWYNLGNAYYK-----------QGDYDEAIEYYQKALELDPN 109
Query: 120 N 120
           N
Sbjct: 110 N 110

>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix (Trigonal Crystal Form) Length = 136

Iteration: 1
 Score = 40.0 bits (92), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 27/104 (25%), Positives = 48/104 (46%), Gaps = 32/104 (30%)
Query: 58  INEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEE 117
            +EAI  +++AL +DP      ++LGNA+             +GD+D+A E +Q+A++ +
Sbjct: 17  YDEAIEYYQKALELDPRSAEAWYNLGNAYYK-----------QGDYDEAIEYYQKALELD 65
Query: 118 PTN---------------------ELYQKSLEVSTKAPELHMEL 140
           P +                     E YQK+LE+  ++ E    L
Sbjct: 66  PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNL 109

>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 91

Iteration: 1
 Score = 40.0 bits (92), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 36/63 (57%), Gaps = 11/63 (17%)
Query: 58  INEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEE 117
            +EAI  +++AL +DP      ++LGNA+             +GD+D+A E +Q+A++ +
Sbjct: 25  YDEAIEYYQKALELDPNNAEAWYNLGNAYYK-----------QGDYDEAIEYYQKALELD 73
Query: 118 PTN 120
           P N
Sbjct: 74  PNN 76

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	174
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	1e-56
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	2e-08
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	3e-08
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	4e-06
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	6e-06
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	2e-07
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	7e-05
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	4e-07
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	2e-06
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-06
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	5e-05
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	2e-06
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	3e-04
2gw1_A	514	Mitochondrial precursor proteins import receptor;	3e-06
2gw1_A	514	Mitochondrial precursor proteins import receptor;	4e-06
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-05
2gw1_A	514	Mitochondrial precursor proteins import receptor;	4e-05
2gw1_A	514	Mitochondrial precursor proteins import receptor;	9e-05
2gw1_A	514	Mitochondrial precursor proteins import receptor;	8e-04
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	5e-06
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	6e-05
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-04
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	4e-04
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	4e-04
2kat_A	115	Uncharacterized protein; NESG, structure, structur	6e-06
2kat_A	115	Uncharacterized protein; NESG, structure, structur	2e-04
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	8e-06
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	5e-05
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	7e-05
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	8e-04
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	9e-04
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	9e-06
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-05
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-05
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	5e-05
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	6e-05
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	7e-05
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	8e-05
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-04
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-04
3u4t_A	272	TPR repeat-containing protein; structural genomics	1e-05
3u4t_A	272	TPR repeat-containing protein; structural genomics	4e-05
3k9i_A	117	BH0479 protein; putative protein binding protein,	2e-05
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-05
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	3e-05
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	3e-05
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	4e-04
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	2e-05
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	2e-04
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	2e-05
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	2e-05
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	2e-05
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	3e-05
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	2e-04
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	4e-05
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	5e-05
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	4e-05
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	5e-05
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	7e-05
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	6e-05
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	6e-05
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	9e-04
4g1t_A	472	Interferon-induced protein with tetratricopeptide	9e-05
4g1t_A	472	Interferon-induced protein with tetratricopeptide	1e-04
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	1e-04
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	2e-04
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	9e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	1e-04
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	1e-04
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	2e-04
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	2e-04
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	3e-04
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	2e-04
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	3e-04
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	2e-04
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	2e-04
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	3e-04
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	3e-04
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	7e-04
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	7e-04
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	8e-04
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	7e-04

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 Length = 158

 Score =  174 bits (442), Expect = 1e-56
 Identities = 83/146 (56%), Positives = 110/146 (75%)

Query: 3   FSQSDFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAI 62
            ++++FDR+LL E  R+ AE  Y  +PLDADNLTRWG  LLELSQF S+SD+K++I EAI
Sbjct: 7   DTETEFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAI 66

Query: 63  SKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNEL 122
           +KFEEAL+IDP K   +W +GNA+TS  FLT D +EAK +FD A++ FQ+AVDE+P N  
Sbjct: 67  TKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTH 126

Query: 123 YQKSLEVSTKAPELHMELHKHGINQQ 148
           Y KSLE++ KAP+LH E +K G+   
Sbjct: 127 YLKSLEMTAKAPQLHAEAYKQGLGGS 152

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 49.8 bits (119), Expect = 2e-08
 Identities = 14/101 (13%), Positives = 27/101 (26%), Gaps = 21/101 (20%)

Query: 26  AKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNA 85
             D  + D +           QF+          +A   +  A  +    +  ++  G  
Sbjct: 64  IYDFYNVDYIMGLAAIYQIKEQFQ----------QAADLYAVAFALGKNDYTPVFHTGQC 113

Query: 86  HTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKS 126
                              KA ECF+  +      +L  K+
Sbjct: 114 Q-----------LRLKAPLKAKECFELVIQHSNDEKLKIKA 143

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 50.1 bits (120), Expect = 3e-08
 Identities = 14/118 (11%), Positives = 31/118 (26%), Gaps = 24/118 (20%)

Query: 11  LLLSEHNRKTAEANYAK----DPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFE 66
           + +     K A   Y K    +  +       G      ++ E          + +    
Sbjct: 97  MQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQE---------KKKLETDY 147

Query: 67  EALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQ 124
           + L       Y  +  G +                 ++KA    Q+ +   P+ E  +
Sbjct: 148 KKLSSPTKMQYARYRDGLSK-----------LFTTRYEKARNSLQKVILRFPSTEAQK 194

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 44.4 bits (105), Expect = 4e-06
 Identities = 21/151 (13%), Positives = 38/151 (25%), Gaps = 43/151 (28%)

Query: 6   SDFDRLLLSEHNRKTAEANYAK-----DPLDADNLTRWGEALLELSQFESVSDSKKIINE 60
           S F + +    N    E  Y         + +   T    A  +   ++          +
Sbjct: 25  SYFRQTI--ALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYD----------K 72

Query: 61  AISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN 120
           A   ++E L   P     L +                  +G    A   +++ +  E  N
Sbjct: 73  AYLFYKELLQKAPNNVDCLEACAEMQ-----------VCRGQEKDALRMYEKILQLEADN 121

Query: 121 ---------------ELYQKSLEVSTKAPEL 136
                          E  +K LE   K    
Sbjct: 122 LAANIFLGNYYYLTAEQEKKKLETDYKKLSS 152

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 43.6 bits (103), Expect = 6e-06
 Identities = 16/102 (15%), Positives = 38/102 (37%), Gaps = 15/102 (14%)

Query: 31  DADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDP--AKHYTLWSLGNAHTS 88
             D + +   A +E  Q            +A+S F + + ++    + Y   ++      
Sbjct: 3   SVDEMLQKVSAAIEAGQNG----------QAVSYFRQTIALNIDRTEMYYWTNVDKNSEI 52

Query: 89  CGFLTADLSEA---KGDFDKASECFQRAVDEEPTNELYQKSL 127
              L  +L+ A     ++DKA   ++  + + P N    ++ 
Sbjct: 53  SSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEAC 94

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 47.9 bits (115), Expect = 2e-07
 Identities = 15/101 (14%), Positives = 28/101 (27%), Gaps = 20/101 (19%)

Query: 21  AEANYAK----DPLDAD---NLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDP 73
           A   + +    +P D +    L       L+L               A+   +  +   P
Sbjct: 24  ALTLFERALKENPQDPEALYWL---ARTQLKLGLVN----------PALENGKTLVARTP 70

Query: 74  AKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAV 114
                   L  A+ +      D    KG  ++A    + A 
Sbjct: 71  RYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAE 111

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 40.6 bits (96), Expect = 7e-05
 Identities = 22/111 (19%), Positives = 37/111 (33%), Gaps = 22/111 (19%)

Query: 21  AEANYAK----DPLDAD---NLTRWGEALLELSQF-ESVSDSKKIINEAISKFEEALVID 72
           A  N        P        L    EA + L +  E     K  + +A+S  ++A  ++
Sbjct: 58  ALENGKTLVARTPRYLGGYMVL---SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN 114

Query: 73  PAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELY 123
           P         G             +   G+ DKA    ++A+  E T E+ 
Sbjct: 115 PRYAPLHLQRGLV----------YAL-LGERDKAEASLKQALALEDTPEIR 154

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 46.8 bits (111), Expect = 4e-07
 Identities = 13/115 (11%), Positives = 37/115 (32%), Gaps = 22/115 (19%)

Query: 10  RLLLSEHNRKTAEANYAK----DPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKF 65
              L +++   +   Y +       +A+        L   +        + +  +  +  
Sbjct: 52  EYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQAS-------QHMTAQTRAMI 104

Query: 66  EEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN 120
           ++AL +D  +   L  L +               + ++ +A E +Q+ +D     
Sbjct: 105 DKALALDSNEITALMLLASDA-----------FMQANYAQAIELWQKVMDLNSPR 148

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 44.2 bits (105), Expect = 2e-06
 Identities = 21/118 (17%), Positives = 39/118 (33%), Gaps = 18/118 (15%)

Query: 12  LLSEHNRKTAEANYAK----DPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEE 67
              + + + A  +Y K    DP +            E  +F           E +   E+
Sbjct: 18  AYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFA----------ECVQFCEK 67

Query: 68  ALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQK 125
           A+ +          +  A +  G   A   + + D   A + F R++ E    EL +K
Sbjct: 68  AVEVGRETRADYKLIAKAMSRAG--NA--FQKQNDLSLAVQWFHRSLSEFRDPELVKK 121

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 45.4 bits (108), Expect = 2e-06
 Identities = 17/135 (12%), Positives = 41/135 (30%), Gaps = 26/135 (19%)

Query: 21  AEANYAK----DPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKH 76
           A + +      DP +     R     L + + +           A+    + + +     
Sbjct: 45  ALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSK----------AALPDLTKVIQLKMDFT 94

Query: 77  YTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLEVSTKAPEL 136
                 G+               +G  D+A + F++ +   P+    +++     K+ E+
Sbjct: 95  AARLQRGHLLL-----------KQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEM 143

Query: 137 HMELHKHGINQQTLG 151
              L    +N    G
Sbjct: 144 -QRLRSQALNAFGSG 157

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 41.6 bits (98), Expect = 5e-05
 Identities = 13/90 (14%), Positives = 29/90 (32%), Gaps = 21/90 (23%)

Query: 39  GEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSE 98
                +  +            EAI    E L ++P     L     A+            
Sbjct: 302 CHCFSKDEKPV----------EAIRVCSEVLQMEPDNVNALKDRAEAY-----------L 340

Query: 99  AKGDFDKASECFQRAVDEEPTNELYQKSLE 128
            +  +D+A + ++ A +    ++  ++ LE
Sbjct: 341 IEEMYDEAIQDYETAQEHNENDQQIREGLE 370

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 44.0 bits (104), Expect = 2e-06
 Identities = 15/98 (15%), Positives = 25/98 (25%), Gaps = 21/98 (21%)

Query: 28  DPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT 87
           D  DA      G     L  +E          +A+  +    ++D  +    +     H 
Sbjct: 48  DHYDARYFLGLGACRQSLGLYE----------QALQSYSYGALMDINEPRFPFHAAECH- 96

Query: 88  SCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQK 125
                        GD D A   F  A         ++ 
Sbjct: 97  ----------LQLGDLDGAESGFYSARALAAAQPAHEA 124

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 38.2 bits (89), Expect = 3e-04
 Identities = 9/93 (9%), Positives = 26/93 (27%), Gaps = 21/93 (22%)

Query: 28  DPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT 87
                + L   G    +  +++          +A   F+   ++D         LG    
Sbjct: 14  SEDTLEQLYALGFNQYQAGKWD----------DAQKIFQALCMLDHYDARYFLGLGACR- 62

Query: 88  SCGFLTADLSEAKGDFDKASECFQRAVDEEPTN 120
                     ++ G +++A + +      +   
Sbjct: 63  ----------QSLGLYEQALQSYSYGALMDINE 85

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 45.1 bits (107), Expect = 3e-06
 Identities = 14/105 (13%), Positives = 39/105 (37%), Gaps = 16/105 (15%)

Query: 21  AEANYAK----DPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKH 76
            E  +++     P   +    + E L + + F+          +A+ +++ A+ ++    
Sbjct: 357 CETLFSEAKRKFPEAPEVPNFFAEILTDKNDFD----------KALKQYDLAIELENKLD 406

Query: 77  YTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE 121
                +         LT   +    +F +A+   ++A   +P +E
Sbjct: 407 GIYVGIAPLVGKATLLTR--NPTVENFIEATNLLEKASKLDPRSE 449

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 44.7 bits (106), Expect = 4e-06
 Identities = 18/121 (14%), Positives = 33/121 (27%), Gaps = 18/121 (14%)

Query: 21  AEANYAK----DPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKH 76
           A   Y      +             + + +        +    EA +  E+A  +DP   
Sbjct: 391 ALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENF-IEATNLLEKASKLDPRSE 449

Query: 77  YTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN-ELYQ-KSLEVSTKAP 134
                L                 + D D+A   F+ + D   T  E  Q  +   + K  
Sbjct: 450 QAKIGLAQMK-----------LQQEDIDEAITLFEESADLARTMEEKLQAITFAEAAKVQ 498

Query: 135 E 135
           +
Sbjct: 499 Q 499

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 42.4 bits (100), Expect = 2e-05
 Identities = 18/104 (17%), Positives = 31/104 (29%), Gaps = 25/104 (24%)

Query: 21  AEANYAK----DPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKH 76
           A  ++ K    DP +     +        ++F+          +  + F EA    P   
Sbjct: 323 AGKDFDKAKELDPENIFPYIQLACLAYRENKFD----------DCETLFSEAKRKFPEAP 372

Query: 77  YTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN 120
                     T            K DFDKA + +  A++ E   
Sbjct: 373 EVPNFFAEILT-----------DKNDFDKALKQYDLAIELENKL 405

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 42.0 bits (99), Expect = 4e-05
 Identities = 15/104 (14%), Positives = 28/104 (26%), Gaps = 25/104 (24%)

Query: 21  AEANYAK----DPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKH 76
               + K    D  ++      G+    L  ++          +A   F++A  +DP   
Sbjct: 289 YYNYFDKALKLDSNNSSVYYHRGQMNFILQNYD----------QAGKDFDKAKELDPENI 338

Query: 77  YTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN 120
           +    L                 +  FD     F  A  + P  
Sbjct: 339 FPYIQLACLAYR-----------ENKFDDCETLFSEAKRKFPEA 371

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 40.9 bits (96), Expect = 9e-05
 Identities = 15/104 (14%), Positives = 34/104 (32%), Gaps = 26/104 (25%)

Query: 21  AEANYAK----DPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKH 76
           A  +  K     P   ++       + + +             E  + F++AL +D    
Sbjct: 256 AHEDIKKAIELFP-RVNSYIYMALIMADRNDST----------EYYNYFDKALKLDSNNS 304

Query: 77  YTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN 120
              +  G  +               ++D+A + F +A + +P N
Sbjct: 305 SVYYHRGQMN-----------FILQNYDQAGKDFDKAKELDPEN 337

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 38.2 bits (89), Expect = 8e-04
 Identities = 10/93 (10%), Positives = 24/93 (25%), Gaps = 22/93 (23%)

Query: 28  DPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT 87
               A +L   G      +              A    ++A+ + P +  +   +     
Sbjct: 233 KEKLAISLEHTGIFKFLKNDPL----------GAHEDIKKAIELFP-RVNSYIYMALIMA 281

Query: 88  SCGFLTADLSEAKGDFDKASECFQRAVDEEPTN 120
                       + D  +    F +A+  +  N
Sbjct: 282 D-----------RNDSTEYYNYFDKALKLDSNN 303

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 44.2 bits (105), Expect = 5e-06
 Identities = 15/126 (11%), Positives = 39/126 (30%), Gaps = 25/126 (19%)

Query: 21  AEANYAK----DPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKH 76
           A + +      DP +     R     L + + +           A+    + + +     
Sbjct: 22  ALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSK----------AALPDLTKVIALKMDFT 71

Query: 77  YTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLEVSTKAPEL 136
                 G+               +G  D+A + F++ +   P+ +  +++     KA E+
Sbjct: 72  AARLQRGHLLL-----------KQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEM 120

Query: 137 HMELHK 142
                +
Sbjct: 121 QRLRSQ 126

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 41.1 bits (97), Expect = 6e-05
 Identities = 13/90 (14%), Positives = 29/90 (32%), Gaps = 21/90 (23%)

Query: 39  GEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSE 98
                +  +            EAI    E L ++P     L     A+            
Sbjct: 279 CHCFSKDEKPV----------EAIRICSEVLQMEPDNVNALKDRAEAY-----------L 317

Query: 99  AKGDFDKASECFQRAVDEEPTNELYQKSLE 128
            +  +D+A + ++ A +    ++  ++ LE
Sbjct: 318 IEEMYDEAIQDYEAAQEHNENDQQIREGLE 347

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 40.3 bits (95), Expect = 1e-04
 Identities = 13/112 (11%), Positives = 31/112 (27%), Gaps = 15/112 (13%)

Query: 21  AEANYAK----DPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKH 76
           A ++          + +   +      +L   E           ++S+  E L +D    
Sbjct: 173 AISDLKAASKLKSDNTEAFYKISTLYYQLGDHE----------LSLSEVRECLKLDQDHK 222

Query: 77  YTLWSLGNAHTSCGFLT-ADLSEAKGDFDKASECFQRAVDEEPTNELYQKSL 127
                          +  A+     G +  A+  ++  +  EP+   Y    
Sbjct: 223 RCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRS 274

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 38.8 bits (91), Expect = 4e-04
 Identities = 13/117 (11%), Positives = 32/117 (27%), Gaps = 23/117 (19%)

Query: 6   SDFDRLLLSEHNRKTAEANYAK--DPLDADNLTRWGEALLELSQFESVSDSKKIINEAIS 63
            DF ++L S  + +  +   ++     +   L        + + +            AI+
Sbjct: 92  DDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYT----------AAIT 141

Query: 64  KFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN 120
             ++ L +                            +G+  KA    + A   +  N
Sbjct: 142 FLDKILEVCVWDAELRELRAECF-----------IKEGEPRKAISDLKAASKLKSDN 187

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 38.8 bits (91), Expect = 4e-04
 Identities = 14/91 (15%), Positives = 25/91 (27%), Gaps = 21/91 (23%)

Query: 31  DADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCG 90
           D +     G+ LL   Q            +A+S+F  A+  DP  +   +          
Sbjct: 2   DVEKHLELGKKLLAAGQLA----------DALSQFHAAVDGDPDNYIAYYRRATVFL--- 48

Query: 91  FLTADLSEAKGDFDKASECFQRAVDEEPTNE 121
                   A G    A     + +  +    
Sbjct: 49  --------AMGKSKAALPDLTKVIALKMDFT 71

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 42.3 bits (100), Expect = 6e-06
 Identities = 15/95 (15%), Positives = 27/95 (28%), Gaps = 21/95 (22%)

Query: 26  AKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNA 85
           A+   +       G+   E  QF+           A+     AL  DP        LG  
Sbjct: 13  AQGTDNMLLRFTLGKTYAEHEQFD----------AALPHLRAALDFDPTYSVAWKWLGKT 62

Query: 86  HTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN 120
                       + +GD   A + ++  +    + 
Sbjct: 63  L-----------QGQGDRAGARQAWESGLAAAQSR 86

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 38.5 bits (90), Expect = 2e-04
 Identities = 10/61 (16%), Positives = 18/61 (29%), Gaps = 11/61 (18%)

Query: 58  INEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEE 117
           +     + E  L          ++LG  +                FD A    + A+D +
Sbjct: 1   MQAITERLEAMLAQGTDNMLLRFTLGKTY-----------AEHEQFDAALPHLRAALDFD 49

Query: 118 P 118
           P
Sbjct: 50  P 50

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 43.9 bits (104), Expect = 8e-06
 Identities = 18/110 (16%), Positives = 40/110 (36%), Gaps = 19/110 (17%)

Query: 21  AEANYAK----DPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKH 76
           +EA + +     P   +  T + E L +   F+           AI +++ A  ++  + 
Sbjct: 363 SEAFFNETKLKFPTLPEVPTFFAEILTDRGDFD----------TAIKQYDIAKRLEEVQE 412

Query: 77  YTLWSLGNAHTSCGFLTADLSEA-----KGDFDKASECFQRAVDEEPTNE 121
                +G        L    S+      +  F+ A +   +A + +P +E
Sbjct: 413 KIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSE 462

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 41.6 bits (98), Expect = 5e-05
 Identities = 17/104 (16%), Positives = 31/104 (29%), Gaps = 25/104 (24%)

Query: 21  AEANYAK----DPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKH 76
           A+ ++ K    +P +     +    L +  +F           E+ + F E  +  P   
Sbjct: 329 AKEDFQKAQSLNPENVYPYIQLACLLYKQGKFT----------ESEAFFNETKLKFPTLP 378

Query: 77  YTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN 120
                     T            +GDFD A + +  A   E   
Sbjct: 379 EVPTFFAEILT-----------DRGDFDTAIKQYDIAKRLEEVQ 411

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 41.2 bits (97), Expect = 7e-05
 Identities = 15/104 (14%), Positives = 28/104 (26%), Gaps = 25/104 (24%)

Query: 21  AEANYAK----DPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKH 76
               + K    +P         G+    L  ++           A   F++A  ++P   
Sbjct: 295 FFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYK----------NAKEDFQKAQSLNPENV 344

Query: 77  YTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN 120
           Y    L                 +G F ++   F     + PT 
Sbjct: 345 YPYIQLACLLYK-----------QGKFTESEAFFNETKLKFPTL 377

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 38.2 bits (89), Expect = 8e-04
 Identities = 10/68 (14%), Positives = 18/68 (26%), Gaps = 11/68 (16%)

Query: 56  KIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVD 115
            + +  +S       +       L   G  H             K +   A    Q +++
Sbjct: 223 DMYHSLLSANTVDDPLRENAALALCYTGIFH-----------FLKNNLLDAQVLLQESIN 271

Query: 116 EEPTNELY 123
             PT   Y
Sbjct: 272 LHPTPNSY 279

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 37.8 bits (88), Expect = 9e-04
 Identities = 19/109 (17%), Positives = 35/109 (32%), Gaps = 31/109 (28%)

Query: 21  AEANYAK--------DPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVID 72
            E + A+            A  L   G        F           EAI  ++ A+ +D
Sbjct: 6   GEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFN----------EAIKYYQYAIELD 55

Query: 73  PAKHYTLWS-LGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN 120
           P      +S +   +            + GD +K  E   +A++ +P +
Sbjct: 56  P-NEPVFYSNISACY-----------ISTGDLEKVIEFTTKALEIKPDH 92

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 43.7 bits (104), Expect = 9e-06
 Identities = 20/104 (19%), Positives = 33/104 (31%), Gaps = 25/104 (24%)

Query: 21  AEANYAK----DPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKH 76
           AE  Y       P  AD+L        E    E          EA+  + +AL + P   
Sbjct: 290 AEDCYNTALRLCPTHADSLNNLANIKREQGNIE----------EAVRLYRKALEVFPEFA 339

Query: 77  YTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN 120
               +L +             + +G   +A   ++ A+   PT 
Sbjct: 340 AAHSNLASVL-----------QQQGKLQEALMHYKEAIRISPTF 372

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 43.7 bits (104), Expect = 1e-05
 Identities = 20/104 (19%), Positives = 34/104 (32%), Gaps = 25/104 (24%)

Query: 21  AEANYAK----DPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKH 76
           A  +Y       P   D       AL+     E           A+  +  AL  +P  +
Sbjct: 86  AIEHYRHALRLKPDFIDGYINLAAALVAAGDME----------GAVQAYVSALQYNPDLY 135

Query: 77  YTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN 120
                LGN             +A G  ++A  C+ +A++ +P  
Sbjct: 136 CVRSDLGNLL-----------KALGRLEEAKACYLKAIETQPNF 168

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 42.9 bits (102), Expect = 2e-05
 Identities = 20/104 (19%), Positives = 32/104 (30%), Gaps = 25/104 (24%)

Query: 21  AEANYAK----DPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKH 76
           A A Y +     P  A           E    +           AI  +  A+ + P   
Sbjct: 222 AVAAYLRALSLSPNHAVVHGNLACVYYEQGLID----------LAIDTYRRAIELQPHFP 271

Query: 77  YTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN 120
               +L NA            + KG   +A +C+  A+   PT+
Sbjct: 272 DAYCNLANAL-----------KEKGSVAEAEDCYNTALRLCPTH 304

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 41.4 bits (98), Expect = 5e-05
 Identities = 21/105 (20%), Positives = 34/105 (32%), Gaps = 31/105 (29%)

Query: 21  AEANYAK----DPLDAD---NLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDP 73
           A   Y      +P       +L   G  L  L + E          EA + + +A+   P
Sbjct: 120 AVQAYVSALQYNPDLYCVRSDL---GNLLKALGRLE----------EAKACYLKAIETQP 166

Query: 74  AKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEP 118
                  +LG               A+G+   A   F++AV  +P
Sbjct: 167 NFAVAWSNLGCVF-----------NAQGEIWLAIHHFEKAVTLDP 200

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 41.4 bits (98), Expect = 6e-05
 Identities = 21/107 (19%), Positives = 35/107 (32%), Gaps = 31/107 (28%)

Query: 21  AEANYAK----DPLDAD---NLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDP 73
           A   Y +     P   D   NL     AL E               EA   +  AL + P
Sbjct: 256 AIDTYRRAIELQPHFPDAYCNL---ANALKEKGSVA----------EAEDCYNTALRLCP 302

Query: 74  AKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN 120
               +L +L N               +G+ ++A   +++A++  P  
Sbjct: 303 THADSLNNLANIK-----------REQGNIEEAVRLYRKALEVFPEF 338

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 41.0 bits (97), Expect = 7e-05
 Identities = 20/104 (19%), Positives = 32/104 (30%), Gaps = 25/104 (24%)

Query: 21  AEANYAK----DPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKH 76
           +          +PL A+  +  G    E  Q +          EAI  +  AL + P   
Sbjct: 52  SAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ----------EAIEHYRHALRLKPDFI 101

Query: 77  YTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN 120
               +L  A             A GD + A + +  A+   P  
Sbjct: 102 DGYINLAAAL-----------VAAGDMEGAVQAYVSALQYNPDL 134

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 41.0 bits (97), Expect = 8e-05
 Identities = 14/104 (13%), Positives = 33/104 (31%), Gaps = 25/104 (24%)

Query: 21  AEANY----AKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKH 76
           AE +      ++P +   L        +  + +           +      A+  +P   
Sbjct: 18  AERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLD----------RSAHFSTLAIKQNPLLA 67

Query: 77  YTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN 120
               +LGN +           + +G   +A E ++ A+  +P  
Sbjct: 68  EAYSNLGNVY-----------KERGQLQEAIEHYRHALRLKPDF 100

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 40.6 bits (96), Expect = 1e-04
 Identities = 22/107 (20%), Positives = 38/107 (35%), Gaps = 31/107 (28%)

Query: 21  AEANYAK----DPLDAD---NLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDP 73
           A  ++ K    DP   D   NL   G  L E   F+           A++ +  AL + P
Sbjct: 188 AIHHFEKAVTLDPNFLDAYINL---GNVLKEARIFD----------RAVAAYLRALSLSP 234

Query: 74  AKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN 120
                  +L   +             +G  D A + ++RA++ +P  
Sbjct: 235 NHAVVHGNLACVY-----------YEQGLIDLAIDTYRRAIELQPHF 270

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 39.4 bits (93), Expect = 2e-04
 Identities = 23/104 (22%), Positives = 34/104 (32%), Gaps = 25/104 (24%)

Query: 21  AEANYAK----DPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKH 76
           A+A Y K     P  A   +  G       +             AI  FE+A+ +DP   
Sbjct: 154 AKACYLKAIETQPNFAVAWSNLGCVFNAQGEIW----------LAIHHFEKAVTLDPNFL 203

Query: 77  YTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN 120
               +LGN                  FD+A   + RA+   P +
Sbjct: 204 DAYINLGNVLK-----------EARIFDRAVAAYLRALSLSPNH 236

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 43.0 bits (102), Expect = 1e-05
 Identities = 16/104 (15%), Positives = 27/104 (25%), Gaps = 25/104 (24%)

Query: 21  AEANYAK----DPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKH 76
           A   Y      D    D   + G        F            AI   E+ +       
Sbjct: 93  AIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFP----------LAIQYMEKQIRPTTTDP 142

Query: 77  YTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN 120
              + LG A+               ++ KA   F + ++ +P  
Sbjct: 143 KVFYELGQAY-----------YYNKEYVKADSSFVKVLELKPNI 175

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 41.9 bits (99), Expect = 4e-05
 Identities = 13/93 (13%), Positives = 32/93 (34%), Gaps = 21/93 (22%)

Query: 28  DPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT 87
               + +   +G+ L++  Q             AI +++ A+  D  +      +G+   
Sbjct: 70  TKAKSADFEYYGKILMKKGQDS----------LAIQQYQAAVDRDTTRLDMYGQIGSYF- 118

Query: 88  SCGFLTADLSEAKGDFDKASECFQRAVDEEPTN 120
                       KG+F  A +  ++ +    T+
Sbjct: 119 ----------YNKGNFPLAIQYMEKQIRPTTTD 141

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 41.2 bits (97), Expect = 2e-05
 Identities = 12/111 (10%), Positives = 30/111 (27%), Gaps = 24/111 (21%)

Query: 21  AEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLW 80
           A A+  +    A+     G     L ++           +A +     +   P       
Sbjct: 16  AIASGLQGKDLAECYLGLGSTFRTLGEYR----------KAEAVLANGVKQFPNHQALRV 65

Query: 81  SLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE---LYQKSLE 128
                               G +++  E   + + E   +E    Y++++ 
Sbjct: 66  FYAMVL-----------YNLGRYEQGVELLLKIIAETSDDETIQSYKQAIL 105

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 42.8 bits (101), Expect = 2e-05
 Identities = 18/142 (12%), Positives = 33/142 (23%), Gaps = 39/142 (27%)

Query: 28  DPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT 87
            P     +         L   +            +    +A  + P +   + S      
Sbjct: 68  TPEQVVAIASHDGGKQALETVQ----------RLLPVLCQAHGLTPQQVVAIASHDGGK- 116

Query: 88  SCGFLTADLSEAKGDFDKASECFQRAVDEEPTN--------------ELYQKSLEVSTKA 133
                     +A     +      +A    P                E  Q  L V  +A
Sbjct: 117 ----------QALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQA 166

Query: 134 ----PELHMELHKHGINQQTLG 151
               PE  + +  +G  +Q L 
Sbjct: 167 HGLTPEQVVAIASNGGGKQALE 188

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 42.4 bits (100), Expect = 3e-05
 Identities = 19/153 (12%), Positives = 36/153 (23%), Gaps = 43/153 (28%)

Query: 21  AEANYAK----DPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKH 76
                 +     P     +         L   +            +    +A  + P + 
Sbjct: 261 LLPVLCQAHGLTPQQVVAIASNSGGKQALETVQ----------RLLPVLCQAHGLTPQQV 310

Query: 77  YTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN--------------EL 122
             + S G              +A     +      +A    P                E 
Sbjct: 311 VAIASNGGGK-----------QALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALET 359

Query: 123 YQKSLEVSTKA----PELHMELHKHGINQQTLG 151
            Q+ L V  +A    PE  + +  +G  +Q L 
Sbjct: 360 VQRLLPVLCQAHGLTPEQVVAIASNGGGKQALE 392

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 42.4 bits (100), Expect = 3e-05
 Identities = 19/153 (12%), Positives = 35/153 (22%), Gaps = 43/153 (28%)

Query: 21  AEANYAK----DPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKH 76
                 +     P     +   G     L   +            +    +A  + P + 
Sbjct: 295 LLPVLCQAHGLTPQQVVAIASNGGGKQALETVQ----------RLLPVLCQAHGLTPQQV 344

Query: 77  YTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN--------------EL 122
             + S                +A     +      +A    P                E 
Sbjct: 345 VAIASHDGGK-----------QALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALET 393

Query: 123 YQKSLEVSTKA----PELHMELHKHGINQQTLG 151
            Q+ L V  +A    PE  + +  H   +Q L 
Sbjct: 394 VQRLLPVLCQAHGLTPEQVVAIASHDGGKQALE 426

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 39.0 bits (91), Expect = 4e-04
 Identities = 16/150 (10%), Positives = 29/150 (19%), Gaps = 41/150 (27%)

Query: 21  AEANYAK----DPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKH 76
                 +     P     +   G     L   +            +    +A  + P + 
Sbjct: 363 LLPVLCQAHGLTPEQVVAIASNGGGKQALETVQ----------RLLPVLCQAHGLTPEQV 412

Query: 77  YTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN--------------EL 122
             + S                +A     +      +A    P                E 
Sbjct: 413 VAIASHDGGK-----------QALETVQRLLPVLCQAHGLTPQQVVAIASNGGGRPALES 461

Query: 123 YQKSLEVSTKAPELHMELHKHGINQQTLGG 152
               L     A       + H +    LGG
Sbjct: 462 IVAQLSRPDPALAA--LTNDHLVALACLGG 489

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 41.8 bits (98), Expect = 2e-05
 Identities = 11/103 (10%), Positives = 24/103 (23%), Gaps = 21/103 (20%)

Query: 26  AKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNA 85
             D  D+      G     + Q++           AI  +    V+D  +    +     
Sbjct: 49  VLDHYDSRFFLGLGACRQAMGQYD----------LAIHSYSYGAVMDIXEPRFPFHAAEC 98

Query: 86  HTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLE 128
                          G+  +A      A +       + +   
Sbjct: 99  L-----------LQXGELAEAESGLFLAQELIANXPEFXELST 130

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 39.1 bits (91), Expect = 2e-04
 Identities = 13/104 (12%), Positives = 23/104 (22%), Gaps = 25/104 (24%)

Query: 21  AEANYAK----DPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKH 76
                A          + L        +   +E          +A   F+   V+D    
Sbjct: 6   GGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYE----------DAHXVFQALCVLDHYDS 55

Query: 77  YTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN 120
                LG              +A G +D A   +      +   
Sbjct: 56  RFFLGLGACR-----------QAMGQYDLAIHSYSYGAVMDIXE 88

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 41.1 bits (97), Expect = 2e-05
 Identities = 12/100 (12%), Positives = 31/100 (31%), Gaps = 14/100 (14%)

Query: 26  AKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNA 85
             DP +   +T       E   +           +     E+A+ +          +  A
Sbjct: 32  ELDPTNMTYITNQAAVYFEKGDYN----------KCRELCEKAIEVGRENREDYRQIAKA 81

Query: 86  HTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQK 125
           +   G    +    +  +  A   + +++ E  T ++ +K
Sbjct: 82  YARIG----NSYFKEEKYKDAIHFYNKSLAEHRTPDVLKK 117

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 42.7 bits (101), Expect = 2e-05
 Identities = 16/109 (14%), Positives = 28/109 (25%), Gaps = 27/109 (24%)

Query: 17  NRKTAEANYAKD----PLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVID 72
           +      +Y  +     +  +N    G ++L+L+             EA   FE      
Sbjct: 2   HMLQNNTDYPFEANNPYMYHENPMEEGLSMLKLANLA----------EAALAFEAVCQAA 51

Query: 73  PAKHYTLWS-LGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN 120
           P +    W  LG                      A      A   +P +
Sbjct: 52  P-EREEAWRSLGLTQA-----------ENEKDGLAIIALNHARMLDPKD 88

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 40.4 bits (95), Expect = 2e-05
 Identities = 18/87 (20%), Positives = 30/87 (34%), Gaps = 22/87 (25%)

Query: 39  GEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWS-LGNAHTSCGFLTADLS 97
            + L+     E           A+   EE L  +P      +  +GNA+           
Sbjct: 7   IKELINQGDIE----------NALQALEEFLQTEPVGKDEAYYLMGNAY----------- 45

Query: 98  EAKGDFDKASECFQRAVDEEPTNELYQ 124
              GD+ KA   +Q A++  P +   Q
Sbjct: 46  RKLGDWQKALNNYQSAIELNPDSPALQ 72

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 40.5 bits (95), Expect = 3e-05
 Identities = 16/97 (16%), Positives = 29/97 (29%), Gaps = 21/97 (21%)

Query: 22  EANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWS 81
           EA   K+P   +     G    E  +             AI     A ++DP       +
Sbjct: 41  EAVCQKEPEREEAWRSLGLTQAENEKDG----------LAIIALNHARMLDPKDIAVHAA 90

Query: 82  LGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEP 118
           L  +HT            + + + A    +  +  +P
Sbjct: 91  LAVSHT-----------NEHNANAALASLRAWLLSQP 116

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 38.6 bits (90), Expect = 2e-04
 Identities = 18/101 (17%), Positives = 29/101 (28%), Gaps = 21/101 (20%)

Query: 30  LDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSC 89
           +  +N    G ++L+L+             EA   FE     +P +     SLG      
Sbjct: 15  MYHENPMEEGLSMLKLANLA----------EAALAFEAVCQKEPEREEAWRSLGLTQA-- 62

Query: 90  GFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLEVS 130
                           A      A   +P +     +L VS
Sbjct: 63  ---------ENEKDGLAIIALNHARMLDPKDIAVHAALAVS 94

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 41.9 bits (98), Expect = 4e-05
 Identities = 19/108 (17%), Positives = 30/108 (27%), Gaps = 24/108 (22%)

Query: 21  AEANYAK----DPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKH 76
                 +      ++A  L   G+AL     +           EA     +A+ ++P   
Sbjct: 87  TLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSP---------EAEVLLSKAVKLEPELV 137

Query: 77  YTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQ 124
                LG  +             KGD   A  CF  A+         Q
Sbjct: 138 EAWNQLGEVY-----------WKKGDVTSAHTCFSGALTHCKNKVSLQ 174

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 41.9 bits (98), Expect = 5e-05
 Identities = 17/107 (15%), Positives = 37/107 (34%), Gaps = 9/107 (8%)

Query: 21  AEANYAK---DPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHY 77
           A   ++       +  +L      L +L        S+ +  +++ + + A+ +D     
Sbjct: 156 AHTCFSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHV-MDSVRQAKLAVQMDV-LDG 213

Query: 78  TLWS-LGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELY 123
             W  LGNA+ S  F T    +      +A   + +A   +      
Sbjct: 214 RSWYILGNAYLSLYFNTG---QNPKISQQALSAYAQAEKVDRKASSN 257

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 41.7 bits (98), Expect = 4e-05
 Identities = 10/100 (10%), Positives = 24/100 (24%), Gaps = 21/100 (21%)

Query: 21  AEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLW 80
            +   + +   A      G A  +L  ++           AI    + L++         
Sbjct: 505 VKKTQSNEKPWAATWANLGHAYRKLKMYD----------AAIDALNQGLLLSTNDANVHT 554

Query: 81  SLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN 120
           ++   +             K     A      ++   P  
Sbjct: 555 AIALVY-----------LHKKIPGLAITHLHESLAISPNE 583

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 41.7 bits (97), Expect = 5e-05
 Identities = 20/104 (19%), Positives = 34/104 (32%), Gaps = 25/104 (24%)

Query: 21  AEANYAK----DPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKH 76
           A   Y K     P  A   +     L +  + +          EA+  ++EA+ I P   
Sbjct: 28  AVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQ----------EALMHYKEAIRISPTFA 77

Query: 77  YTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN 120
               ++GN             +   D   A +C+ RA+   P  
Sbjct: 78  DAYSNMGNTL-----------KEMQDVQGALQCYTRAIQINPAF 110

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 41.3 bits (96), Expect = 7e-05
 Identities = 17/95 (17%), Positives = 30/95 (31%), Gaps = 21/95 (22%)

Query: 26  AKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNA 85
              P  AD+L        E    E          EA+  + +AL + P       +L + 
Sbjct: 3   GSCPTHADSLNNLANIKREQGNIE----------EAVRLYRKALEVFPEFAAAHSNLASV 52

Query: 86  HTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN 120
                       + +G   +A   ++ A+   PT 
Sbjct: 53  L-----------QQQGKLQEALMHYKEAIRISPTF 76

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 41.4 bits (97), Expect = 6e-05
 Identities = 13/104 (12%), Positives = 23/104 (22%), Gaps = 25/104 (24%)

Query: 21  AEANYAK----DPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKH 76
                       P D        +A L +                    +  L + P   
Sbjct: 8   ELLQLRAAVRHRPQDFVAWLMLADAELGMGDTT----------AGEMAVQRGLALHPGHP 57

Query: 77  YTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN 120
             +  LG                +    +A+   Q+A D  P +
Sbjct: 58  EAVARLGRVR-----------WTQQRHAEAAVLLQQASDAAPEH 90

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 41.2 bits (97), Expect = 6e-05
 Identities = 18/115 (15%), Positives = 28/115 (24%), Gaps = 27/115 (23%)

Query: 11  LLLSEHNRKTAEANYAK----DPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFE 66
              ++     +E  Y         D       G   L+                 I   E
Sbjct: 40  EAQNQVTVSASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLP----------VTILFME 89

Query: 67  EALVIDPAKHYTLWS-LGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN 120
            A++ DP      W  LG                  +   A    QR ++ +P N
Sbjct: 90  AAILQDP-GDAEAWQFLGITQA-----------ENENEQAAIVALQRCLELQPNN 132

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 37.7 bits (88), Expect = 9e-04
 Identities = 14/112 (12%), Positives = 29/112 (25%), Gaps = 22/112 (19%)

Query: 21  AEANYAK----DPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDP--- 73
           A          +P     +     +     +         ++      + EA   +    
Sbjct: 152 ACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMI 211

Query: 74  -AKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN-ELY 123
                T   LG                 G+F++A + F  A+   P +  L+
Sbjct: 212 DPDLQT--GLGVLFH-----------LSGEFNRAIDAFNAALTVRPEDYSLW 250

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 41.1 bits (96), Expect = 9e-05
 Identities = 11/70 (15%), Positives = 24/70 (34%), Gaps = 11/70 (15%)

Query: 55  KKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAV 114
            ++I  A++  ++A   +         L + H                +++A   FQ+  
Sbjct: 313 LELIGHAVAHLKKADEANDNLFRVCSILASLH-----------ALADQYEEAEYYFQKEF 361

Query: 115 DEEPTNELYQ 124
            +E T    Q
Sbjct: 362 SKELTPVAKQ 371

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 40.3 bits (94), Expect = 1e-04
 Identities = 21/145 (14%), Positives = 43/145 (29%), Gaps = 39/145 (26%)

Query: 21  AEANYAK----DPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKH 76
           A+  + K     P + +  +    A   L  +            AI    +A+ ++P   
Sbjct: 157 AKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPP-------SQNAIDPLRQAIRLNPDNQ 209

Query: 77  YTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN---------------- 120
           Y    L             + E   +  +  +  + A+++ P                  
Sbjct: 210 YLKVLLALKL-------HKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDE 262

Query: 121 -----ELYQKSLEVSTKAPELHMEL 140
                EL +K+LE       LH ++
Sbjct: 263 PDKAIELLKKALEYIPNNAYLHCQI 287

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 40.2 bits (95), Expect = 1e-04
 Identities = 21/113 (18%), Positives = 33/113 (29%), Gaps = 25/113 (22%)

Query: 21  AEANYAK----DPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKH 76
           A   Y +     P DA   +    AL +L  F           EAI+   +A+  DP   
Sbjct: 158 AVKAYTEMIKRAPEDARGYSNRAAALAKLMSFP----------EAIADCNKAIEKDPNFV 207

Query: 77  YTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLEV 129
                   A             A  ++  A E    A  ++        + E+
Sbjct: 208 RAYIRKATAQ-----------IAVKEYASALETLDAARTKDAEVNNGSSAREI 249

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 39.5 bits (93), Expect = 2e-04
 Identities = 14/106 (13%), Positives = 27/106 (25%), Gaps = 30/106 (28%)

Query: 21  AEANYAK------DPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPA 74
              +  K        L         + L +L   E          + + K E    ++P 
Sbjct: 91  KLGDLKKTIEYYQKSLTEHRT---ADILTKLRNAE----------KELKKAEAEAYVNPE 137

Query: 75  KHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN 120
           K       G  +             K D+  A + +   +   P +
Sbjct: 138 KAEEARLEGKEY-----------FTKSDWPNAVKAYTEMIKRAPED 172

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 37.5 bits (88), Expect = 9e-04
 Identities = 13/105 (12%), Positives = 28/105 (26%), Gaps = 27/105 (25%)

Query: 21  AEANYAK----DPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKH 76
                      +P  A+     G+     S +            A+  + E +   P + 
Sbjct: 124 ELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWP----------NAVKAYTEMIKRAP-ED 172

Query: 77  YTLWS-LGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN 120
              +S    A                 F +A     +A++++P  
Sbjct: 173 ARGYSNRAAALAK-----------LMSFPEAIADCNKAIEKDPNF 206

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.6 bits (94), Expect = 1e-04
 Identities = 34/193 (17%), Positives = 59/193 (30%), Gaps = 59/193 (30%)

Query: 8   FD---RLLLSEHNRKTAEANYAKDPLDADNLTRW--GEALLELSQFESVSDSKKIINEAI 62
           F+   ++LL+   ++        D L A   T        + L+  E  S   K ++   
Sbjct: 262 FNLSCKILLTTRFKQVT------DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP 315

Query: 63  SKF-EEALVIDPA-------------------KHYTLWSLGNAHTSCGFLTA-DLSEAKG 101
                E L  +P                    KH     L     S   L   + +E + 
Sbjct: 316 QDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS--LNVLEPAEYRK 373

Query: 102 DFDKASECFQRAVD---------------EEP---TNELYQKSL------EVSTKAPELH 137
            FD+ S  F  +                  +     N+L++ SL      E +   P ++
Sbjct: 374 MFDRLS-VFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIY 432

Query: 138 MELHKHGINQQTL 150
           +EL     N+  L
Sbjct: 433 LELKVKLENEYAL 445

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 38.9 bits (92), Expect = 1e-04
 Identities = 29/107 (27%), Positives = 49/107 (45%), Gaps = 31/107 (28%)

Query: 21  AEANYAK----DPLDAD---NLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDP 73
           A   Y K    DP  A+   NL   G A  +   ++          EAI  +++AL +DP
Sbjct: 54  AIEYYQKALELDPRSAEAWYNL---GNAYYKQGDYD----------EAIEYYQKALELDP 100

Query: 74  AKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN 120
                 ++LGNA            + +GD+D+A E +Q+A++ +P +
Sbjct: 101 RSAEAWYNLGNA----------YYK-QGDYDEAIEYYQKALELDPRS 136

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 38.7 bits (91), Expect = 1e-04
 Identities = 18/93 (19%), Positives = 36/93 (38%), Gaps = 21/93 (22%)

Query: 41  ALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAK 100
           A  +L  +            A+   E A+ IDPA       +G A             + 
Sbjct: 55  AYSKLGNYA----------GAVQDCERAICIDPAYSKAYGRMGLAL-----------SSL 93

Query: 101 GDFDKASECFQRAVDEEPTNELYQKSLEVSTKA 133
               +A   +++A++ +P NE Y+ +L+++   
Sbjct: 94  NKHVEAVAYYKKALELDPDNETYKSNLKIAELK 126

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 15/107 (14%), Positives = 30/107 (28%), Gaps = 32/107 (29%)

Query: 14  SEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDP 73
           +E   + +             L       +    +           +A +  E+AL  DP
Sbjct: 1   AEKANQVSNIKT--------QL---AMEYMRGQDYR----------QATASIEDALKSDP 39

Query: 74  AKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN 120
                       +           +     DKA E F++A+  +P +
Sbjct: 40  KNELAWLVRAEIY-----------QYLKVNDKAQESFRQALSIKPDS 75

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 39.2 bits (92), Expect = 2e-04
 Identities = 18/112 (16%), Positives = 30/112 (26%), Gaps = 25/112 (22%)

Query: 21  AEANYAK----DPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKH 76
           A A+       DP +        E    L   +          +A   F +AL I P   
Sbjct: 27  ATASIEDALKSDPKNELAWLVRAEIYQYLKVND----------KAQESFRQALSIKPDSA 76

Query: 77  YTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLE 128
               + G            L        ++   F +A+  +PT      +  
Sbjct: 77  EINNNYGWF----------LCGRLNRPAESMAYFDKAL-ADPTYPTPYIANL 117

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 38.8 bits (91), Expect = 3e-04
 Identities = 15/107 (14%), Positives = 23/107 (21%), Gaps = 33/107 (30%)

Query: 21  AEANYAK---DPLDAD------NLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVI 71
           + A + K   DP          N    G    +  QF            A +  + +L  
Sbjct: 96  SMAYFDKALADPTYPTPYIANLNK---GICSAKQGQFG----------LAEAYLKRSLAA 142

Query: 72  DPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEP 118
            P        L                  G    A   F++      
Sbjct: 143 QPQFPPAFKELARTK-----------MLAGQLGDADYYFKKYQSRVE 178

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 14/109 (12%), Positives = 32/109 (29%), Gaps = 33/109 (30%)

Query: 21  AEANYAK---DPLDAD------NLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVI 71
           A     +   D L  +      NL   G   L++ +            +A   FE++L +
Sbjct: 124 AYQRLLEASQDTLYPERSRVFENL---GLVSLQMKKPA----------QAKEYFEKSLRL 170

Query: 72  DPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN 120
           +  +      + +           L   + ++  A + +         N
Sbjct: 171 NRNQPSVALEMAD-----------LLYKEREYVPARQYYDLFAQGGGQN 208

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 39.2 bits (92), Expect = 3e-04
 Identities = 18/114 (15%), Positives = 33/114 (28%), Gaps = 25/114 (21%)

Query: 11  LLLSEHNRKTAEANYAK----DPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFE 66
             L        + N  K         D   + G   L+    E          +A     
Sbjct: 12  SGLVPRGSHMGDQNPLKTDKGRDEARDAYIQLGLGYLQRGNTE----------QAKVPLR 61

Query: 67  EALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN 120
           +AL IDP+      +L               + + +   A E +++A+  +  N
Sbjct: 62  KALEIDPSSADAHAALAVVF-----------QTEMEPKLADEEYRKALASDSRN 104

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 23/128 (17%), Positives = 33/128 (25%), Gaps = 31/128 (24%)

Query: 2   EFSQSDFDRLLLSEHNRKTAEANYAKD--------PLDADNLTRWGEALLELSQFESVSD 53
           E ++ D +             A Y K           D       G   L+         
Sbjct: 26  EMAKRDAEAHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLP---- 81

Query: 54  SKKIINEAISKFEEALVIDPAKHYTLWS-LGNAHTSCGFLTADLSEAKGDFDKASECFQR 112
                  A+  FE A+  DP KH   W  LG                      A    +R
Sbjct: 82  ------NAVLLFEAAVQQDP-KHMEAWQYLGTTQA-----------ENEQELLAISALRR 123

Query: 113 AVDEEPTN 120
            ++ +P N
Sbjct: 124 CLELKPDN 131

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 39.2 bits (92), Expect = 2e-04
 Identities = 20/117 (17%), Positives = 35/117 (29%), Gaps = 31/117 (26%)

Query: 11  LLLSEHNRKTAEANYAK----DPLDAD---NLTRWGEALLELSQFESVSDSKKIINEAIS 63
           L  S   R  A  ++++     P   +    L   G  L +   F+           A  
Sbjct: 52  LYDSLGLRALARNDFSQALAIRPDMPEVFNYL---GIYLTQAGNFD----------AAYE 98

Query: 64  KFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN 120
            F+  L +DP  +Y   + G A               G    A +       ++P +
Sbjct: 99  AFDSVLELDPTYNYAHLNRGIAL-----------YYGGRDKLAQDDLLAFYQDDPND 144

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 37.6 bits (88), Expect = 3e-04
 Identities = 16/94 (17%), Positives = 29/94 (30%), Gaps = 21/94 (22%)

Query: 27  KDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAH 86
           +DP D        +  L+                A++ FEE +  DP    T + LG  +
Sbjct: 2   EDPEDPFTRYALAQEHLKHDNAS----------RALALFEELVETDPDYVGTYYHLGKLY 51

Query: 87  TSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN 120
                      E     D A + + + ++     
Sbjct: 52  -----------ERLDRTDDAIDTYAQGIEVAREE 74

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 39.2 bits (92), Expect = 3e-04
 Identities = 16/82 (19%), Positives = 29/82 (35%), Gaps = 21/82 (25%)

Query: 39  GEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSE 98
           G    +L ++           EA+    +ALV+ P    T  ++G  H            
Sbjct: 243 GHVCRKLKKYA----------EALDYHRQALVLIPQNASTYSAIGYIH-----------S 281

Query: 99  AKGDFDKASECFQRAVDEEPTN 120
             G+F+ A + F  A+     +
Sbjct: 282 LMGNFENAVDYFHTALGLRRDD 303

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 38.0 bits (89), Expect = 7e-04
 Identities = 12/105 (11%), Positives = 30/105 (28%), Gaps = 25/105 (23%)

Query: 20  TAEANYAK----DPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAK 75
            A    +K    +         +G +    S+ +          +A++ +  A  +    
Sbjct: 109 HARRYLSKATTLEKTYGPAWIAYGHSFAVESEHD----------QAMAAYFTAAQLMKGC 158

Query: 76  HYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN 120
           H  +  +G  +               +   A   F +A+   P +
Sbjct: 159 HLPMLYIGLEY-----------GLTNNSKLAERFFSQALSIAPED 192

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 37.4 bits (88), Expect = 7e-04
 Identities = 21/105 (20%), Positives = 40/105 (38%), Gaps = 31/105 (29%)

Query: 21  AEANYAK----DPLDAD---NLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDP 73
           A     K    +P++ +    L   G AL  L +F+          EAI  F+ AL + P
Sbjct: 95  AVPLLIKVAEANPINFNVRFRL---GVALDNLGRFD----------EAIDSFKIALGLRP 141

Query: 74  AKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEP 118
            +     ++  ++           E  G  ++A   F++A + + 
Sbjct: 142 NEGKVHRAIAFSY-----------EQMGRHEEALPHFKKANELDE 175

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 37.4 bits (88), Expect = 8e-04
 Identities = 15/105 (14%), Positives = 25/105 (23%), Gaps = 31/105 (29%)

Query: 21  AEANYAK----DPLDAD---NLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDP 73
           A     +    D  D D   +L   G A ++    +                E +L   P
Sbjct: 27  AVMLLEQVYDADAFDVDVALHL---GIAYVKTGAVD----------RGTELLERSLADAP 73

Query: 74  AKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEP 118
                   LG              +    +D A     +  +  P
Sbjct: 74  DNVKVATVLGLT----------YVQ-VQKYDLAVPLLIKVAEANP 107

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 37.9 bits (89), Expect = 7e-04
 Identities = 21/101 (20%), Positives = 27/101 (26%), Gaps = 31/101 (30%)

Query: 21  AEANYAK----DPLDAD---NLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDP 73
           A A Y K    D   A         G   +    ++          EA   FE+AL    
Sbjct: 76  ALAFYDKALELDSSAATAYYGA---GNVYVVKEMYK----------EAKDMFEKALRAGM 122

Query: 74  AKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAV 114
                 + LG            L +       A    QRAV
Sbjct: 123 ENGDLFYMLGTV----------LVK-LEQPKLALPYLQRAV 152

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	174
d1zu2a1	145	a.118.8.1 (A:1-145) Mitochondrial import receptor	1e-11
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	9e-04
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	0.002
d2pqrb1	124	a.118.8.1 (B:5-128) Mitochondria fission protein F	0.001

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 145

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 57.2 bits (136), Expect = 1e-11
 Identities = 83/141 (58%), Positives = 109/141 (77%)

Query: 5   QSDFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISK 64
           +++FDR+LL E  R+ AE  Y  +PLDADNLTRWG  LLELSQF S+SD+K++I EAI+K
Sbjct: 4   ETEFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITK 63

Query: 65  FEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQ 124
           FEEAL+IDP K   +W +GNA+TS  FLT D +EAK +FD A++ FQ+AVDE+P N  Y 
Sbjct: 64  FEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYL 123

Query: 125 KSLEVSTKAPELHMELHKHGI 145
           KSLE++ KAP+LH E +K G+
Sbjct: 124 KSLEMTAKAPQLHAEAYKQGL 144

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.6 bits (83), Expect = 9e-04
 Identities = 12/63 (19%), Positives = 24/63 (38%), Gaps = 11/63 (17%)

Query: 58  INEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEE 117
           I EA+  + +AL + P       +L +             + +G   +A   ++ A+   
Sbjct: 321 IEEAVRLYRKALEVFPEFAAAHSNLASVL-----------QQQGKLQEALMHYKEAIRIS 369

Query: 118 PTN 120
           PT 
Sbjct: 370 PTF 372

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.8 bits (81), Expect = 0.002
 Identities = 8/62 (12%), Positives = 16/62 (25%), Gaps = 11/62 (17%)

Query: 59  NEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEP 118
             A     +    +P     L  L + H                 D+++     A+ + P
Sbjct: 16  EAAERHCMQLWRQEPDNTGVLLLLSSIH-----------FQCRRLDRSAHFSTLAIKQNP 64

Query: 119 TN 120
             
Sbjct: 65  LL 66

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 124

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 34.7 bits (80), Expect = 0.001
 Identities = 7/74 (9%), Positives = 16/74 (21%), Gaps = 12/74 (16%)

Query: 52  SDSKKIINEAISKFEEALVIDPAKHY-TLWSLGNAHTSCGFLTADLSEAKGDFDKASECF 110
           S         +    +      ++    L+ L                  G++  A    
Sbjct: 48  STDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCY-----------KLGEYSMAKRYV 96

Query: 111 QRAVDEEPTNELYQ 124
               + E  N+   
Sbjct: 97  DTLFEHERNNKQVG 110

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	174
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.93
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.83
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.81
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.8
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.79
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.77
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.76
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.73
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.73
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.73
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.7
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.66
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.66
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.63
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.62
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.58
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.58
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.56
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.55
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.53
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.52
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.52
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.5
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.49
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.49
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.49
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.46
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.36
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.28
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.28
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.27
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.27
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.23
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.21
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.15
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	99.14
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.12
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.11
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	99.09
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.08
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.07
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.97
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	98.94
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.93
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.86
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	98.83
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.8
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.77
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.76
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.62
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.44
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.36
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.06
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.01
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.9
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.51

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.93  E-value=8.3e-26  Score=151.98  Aligned_cols=142  Identities=58%  Similarity=0.927  Sum_probs=132.7

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf             76368864669999999999995099999999999999999337543001131099999999999973999999999999
Q 030634            4 SQSDFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLG   83 (174)
Q Consensus         4 ~~~~~~~~~~~~eA~~~~~~al~~~P~~~~~~~~lg~al~~~~~~~~~~~~~~~~~eAi~~~e~Al~ldP~~~~a~~nLG   83 (174)
                      .+++|+|++.|++|+..++++++++|+++++++++|.++..++++..+.+..+.+++|+..|++|++++|+++.+|+++|
T Consensus         3 ~~~~~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG   82 (145)
T d1zu2a1           3 TETEFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIG   82 (145)
T ss_dssp             CCCSHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_conf             16799987369999999999986188310899999999987621333367788788899999998873012058776689


Q ss_pred             HHHHHCCCCCCCHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf             99985897765626642599999999999998499989999999509999488999999987
Q 030634           84 NAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLEVSTKAPELHMELHKHGI  145 (174)
Q Consensus        84 ~a~~~~g~~~~~~~~~~~~~~eA~~~~~kAl~l~P~~~~~~~Al~~~~~~~~~~~~L~~~~~  145 (174)
                      .+|..+|++.+......+.|++|+.+|++|++++|++..|++.|++..+.++.|..+.+.++
T Consensus        83 ~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~~~~~e~~k~~~  144 (145)
T d1zu2a1          83 NAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQLHAEAYKQGL  144 (145)
T ss_dssp             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHHHHHHHHHSSS
T ss_pred             HHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             99987010113578898867876312110002598889999999999997978999998735

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=1.4e-19  Score=119.18  Aligned_cols=144  Identities=10%  Similarity=-0.044  Sum_probs=123.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf             68864669999999999995099999999999999999337-54300113109999999999997399999999999999
Q 030634            7 DFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQ-FESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNA   85 (174)
Q Consensus         7 ~~~~~~~~~eA~~~~~~al~~~P~~~~~~~~lg~al~~~~~-~~~~~~~~~~~~eAi~~~e~Al~ldP~~~~a~~nLG~a   85 (174)
                      -+.++..+++|+..++++++++|.+..+|+++|.++..+++ +          ++|+..++++++++|++..+|+++|.+
T Consensus        52 ~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~----------~eal~~~~~al~~~p~~~~a~~~~~~~  121 (315)
T d2h6fa1          52 VLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDL----------HEEMNYITAIIEEQPKNYQVWHHRRVL  121 (315)
T ss_dssp             HHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9995886699999999999879887699999999999837679----------999999999998877422689887588


Q ss_pred             HHHCCCCCCCHHHHHCCHHHHHHHHHHHHHHCCCCH---------------------HHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf             985897765626642599999999999998499989---------------------99999950999948899999998
Q 030634           86 HTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELHKHG  144 (174)
Q Consensus        86 ~~~~g~~~~~~~~~~~~~~eA~~~~~kAl~l~P~~~---------------------~~~~Al~~~~~~~~~~~~L~~~~  144 (174)
                      +..+|           ++++|+..+.++++++|++.                     .|.++++++|....++.+++.++
T Consensus       122 ~~~l~-----------~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l  190 (315)
T d2h6fa1         122 VEWLR-----------DPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVI  190 (315)
T ss_dssp             HHHHT-----------CCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHC-----------CHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf             88505-----------3788998875554321004688998877888888667899999999987974499998899999


Q ss_pred             HHCCCC-----------------CCCCCHHHHHHHHHHHHHHHC
Q ss_conf             712125-----------------899860467899999984200
Q 030634          145 INQQTL-----------------GGGSSASSAQVNFCICVHQMK  171 (174)
Q Consensus       145 ~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~  171 (174)
                      ...+..                 ...|+..++..+.+..+...+
T Consensus       191 ~~~~~~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~~  234 (315)
T d2h6fa1         191 SNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRG  234 (315)
T ss_dssp             HHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTC
T ss_pred             HHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC
T ss_conf             87456310235477679999999849885699999877988627

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=1.7e-18  Score=113.45  Aligned_cols=154  Identities=19%  Similarity=0.104  Sum_probs=120.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf             88646699999999999950999999999999999993375430011310999999999999739999999999999998
Q 030634            8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT   87 (174)
Q Consensus         8 ~~~~~~~~eA~~~~~~al~~~P~~~~~~~~lg~al~~~~~~~~~~~~~~~~~eAi~~~e~Al~ldP~~~~a~~nLG~a~~   87 (174)
                      +-+.+.+++|+..++++++.+|+++++|..+|.++...+++          ++|+..|+++++++|+++.+|+++|.++.
T Consensus        29 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~----------~~A~~~~~~al~~~p~~~~~~~~la~~~~   98 (323)
T d1fcha_          29 RLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQE----------LLAISALRRCLELKPDNQTALMALAVSFT   98 (323)
T ss_dssp             HHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHCCCCCCCCCCCCCCCCCC
T ss_conf             99859999999999999986899899999999999983775----------88999998510022222222222222222


Q ss_pred             HCCCC-------------CCC-------------------------HHHHHCCHHHHHHHHHHHHHHCCCCH--------
Q ss_conf             58977-------------656-------------------------26642599999999999998499989--------
Q 030634           88 SCGFL-------------TAD-------------------------LSEAKGDFDKASECFQRAVDEEPTNE--------  121 (174)
Q Consensus        88 ~~g~~-------------~~~-------------------------~~~~~~~~~eA~~~~~kAl~l~P~~~--------  121 (174)
                      ..|..             .|.                         .....+.+.+|+..|+++++++|++.        
T Consensus        99 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l  178 (323)
T d1fcha_          99 NESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGL  178 (323)
T ss_dssp             HTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHH
T ss_pred             CCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH
T ss_conf             22211211100026777361067888766400000001000014788887657999999999999971301222111036


Q ss_pred             ---------------HHHHHHHCCCCCHHHHHHHHHHHHHCCCC---------CC--CCCHHHHHHHHHHHHHHHC
Q ss_conf             ---------------99999950999948899999998712125---------89--9860467899999984200
Q 030634          122 ---------------LYQKSLEVSTKAPELHMELHKHGINQQTL---------GG--GSSASSAQVNFCICVHQMK  171 (174)
Q Consensus       122 ---------------~~~~Al~~~~~~~~~~~~L~~~~~~~~~~---------~~--~~~~~~~~~~~~~~~~~~~  171 (174)
                                     .|++++..+|..+..+.++|.++...|+.         +.  .|+.+.++++++.+...++
T Consensus       179 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g  254 (323)
T d1fcha_         179 GVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLG  254 (323)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_conf             8888888877550021112222222221110133301221111013788877899884324999999999999878

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=2.8e-18  Score=112.24  Aligned_cols=153  Identities=24%  Similarity=0.268  Sum_probs=120.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHH------------------------HHHHHHHHHH
Q ss_conf             8864669999999999995099999999999999999337543001------------------------1310999999
Q 030634            8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSD------------------------SKKIINEAIS   63 (174)
Q Consensus         8 ~~~~~~~~eA~~~~~~al~~~P~~~~~~~~lg~al~~~~~~~~~~~------------------------~~~~~~eAi~   63 (174)
                      +..++.+++|...+++++..+|++++++..+|.++...++++.+..                        ..+.+++|+.
T Consensus       179 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~  258 (388)
T d1w3ba_         179 FNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAID  258 (388)
T ss_dssp             HHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
T ss_conf             10247199999999999984946499999971552200529999999998577755479999999999998789999999


Q ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCHHHHHCCHHHHHHHHHHHHHHCCCCH---------------------H
Q ss_conf             9999997399999999999999985897765626642599999999999998499989---------------------9
Q 030634           64 KFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------L  122 (174)
Q Consensus        64 ~~e~Al~ldP~~~~a~~nLG~a~~~~g~~~~~~~~~~~~~~eA~~~~~kAl~l~P~~~---------------------~  122 (174)
                      .|+++++++|+++.+++++|.++...|           ++++|+..+++++...|.+.                     .
T Consensus       259 ~~~~al~~~p~~~~~~~~l~~~~~~~~-----------~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~  327 (388)
T d1w3ba_         259 TYRRAIELQPHFPDAYCNLANALKEKG-----------SVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRL  327 (388)
T ss_dssp             HHHHHHHTCSSCHHHHHHHHHHHHHHS-----------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHH
T ss_conf             999999849998999999999999748-----------799999999865404873001015799999987899999999


Q ss_pred             HHHHHHCCCCCHHHHHHHHHHHHHCCCC-----------CCCCCHHHHHHHHHHHHHHHC
Q ss_conf             9999950999948899999998712125-----------899860467899999984200
Q 030634          123 YQKSLEVSTKAPELHMELHKHGINQQTL-----------GGGSSASSAQVNFCICVHQMK  171 (174)
Q Consensus       123 ~~~Al~~~~~~~~~~~~L~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~  171 (174)
                      |+++++++|..+.++.+++.++...|+.           ...|+.+.+..+++.++..|+
T Consensus       328 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~  387 (388)
T d1w3ba_         328 YRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ  387 (388)
T ss_dssp             HHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC
T ss_conf             999998688989999999999998599999999999999709998999999999999858

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.79  E-value=1.2e-18  Score=114.21  Aligned_cols=94  Identities=21%  Similarity=0.259  Sum_probs=91.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf             68864669999999999995099999999999999999337543001131099999999999973999999999999999
Q 030634            7 DFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAH   86 (174)
Q Consensus         7 ~~~~~~~~~eA~~~~~~al~~~P~~~~~~~~lg~al~~~~~~~~~~~~~~~~~eAi~~~e~Al~ldP~~~~a~~nLG~a~   86 (174)
                      -|.+++.+++|+..+++++.++|+++.+++++|.++..+|++          ++|+..|+++++++|+++.+|+++|.++
T Consensus        46 ~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~----------~~A~~~~~~al~~~p~~~~a~~~lg~~~  115 (259)
T d1xnfa_          46 LYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNF----------DAAYEAFDSVLELDPTYNYAHLNRGIAL  115 (259)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHCHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999879999999999985434999889996004278887778----------8752344689998761111588899999


Q ss_pred             HHCCCCCCCHHHHHCCHHHHHHHHHHHHHHCCCCH
Q ss_conf             85897765626642599999999999998499989
Q 030634           87 TSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (174)
Q Consensus        87 ~~~g~~~~~~~~~~~~~~eA~~~~~kAl~l~P~~~  121 (174)
                      ..+|           ++++|+..|+++++++|++.
T Consensus       116 ~~~g-----------~~~~A~~~~~~al~~~p~~~  139 (259)
T d1xnfa_         116 YYGG-----------RDKLAQDDLLAFYQDDPNDP  139 (259)
T ss_dssp             HHTT-----------CHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHH-----------HHHHHHHHHHHHHHHCCCCH
T ss_conf             9876-----------67999999999986530007

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=9.9e-18  Score=109.37  Aligned_cols=71  Identities=13%  Similarity=0.089  Sum_probs=40.3

Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC
Q ss_conf             64669999999999995099999999999999999337543001131099999999999973999999999999999858
Q 030634           10 RLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSC   89 (174)
Q Consensus        10 ~~~~~~eA~~~~~~al~~~P~~~~~~~~lg~al~~~~~~~~~~~~~~~~~eAi~~~e~Al~ldP~~~~a~~nLG~a~~~~   89 (174)
                      +.|.|++|++.++++++.+|+++.++..+|.++...|++          ++|+..|+++++++|+++.+|+++|.++..+
T Consensus        11 ~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~----------~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~   80 (388)
T d1w3ba_          11 QAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRL----------DRSAHFSTLAIKQNPLLAEAYSNLGNVYKER   80 (388)
T ss_dssp             HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf             869999999999999986899899999999999986999----------9999999999985999899999999996420


Q ss_pred             C
Q ss_conf             9
Q 030634           90 G   90 (174)
Q Consensus        90 g   90 (174)
                      |
T Consensus        81 g   81 (388)
T d1w3ba_          81 G   81 (388)
T ss_dssp             T
T ss_pred             C
T ss_conf             0

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=1.1e-17  Score=109.21  Aligned_cols=120  Identities=8%  Similarity=-0.018  Sum_probs=109.9

Q ss_pred             HHHHH-HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf             88646-69999999999995099999999999999999337543001131099999999999973999999999999999
Q 030634            8 FDRLL-LSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAH   86 (174)
Q Consensus         8 ~~~~~-~~~eA~~~~~~al~~~P~~~~~~~~lg~al~~~~~~~~~~~~~~~~~eAi~~~e~Al~ldP~~~~a~~nLG~a~   86 (174)
                      +..++ .+++|+..++++++.+|++..+|.++|.++..+|++          ++|+..++++++++|++..+|+++|.++
T Consensus        87 l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~----------~eAl~~~~kal~~dp~n~~a~~~~~~~~  156 (315)
T d2h6fa1          87 LKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDP----------SQELEFIADILNQDAKNYHAWQHRQWVI  156 (315)
T ss_dssp             HHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCC----------TTHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH----------HHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf             998376799999999999988774226898875888850537----------8899887555432100468899887788


Q ss_pred             HHCCCCCCCHHHHHCCHHHHHHHHHHHHHHCCCCH---------------------------HHHHHHHCCCCCHHHHHH
Q ss_conf             85897765626642599999999999998499989---------------------------999999509999488999
Q 030634           87 TSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------------LYQKSLEVSTKAPELHME  139 (174)
Q Consensus        87 ~~~g~~~~~~~~~~~~~~eA~~~~~kAl~l~P~~~---------------------------~~~~Al~~~~~~~~~~~~  139 (174)
                      ..+|           ++++|+.+|+++++++|++.                           .+.+++.++|..+.++.+
T Consensus       157 ~~~~-----------~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~~~~~~~  225 (315)
T d2h6fa1         157 QEFK-----------LWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNY  225 (315)
T ss_dssp             HHHT-----------CCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred             HHHH-----------HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf             8888-----------66789999999998797449999889999987456310235477679999999849885699999


Q ss_pred             HHHHHHHCC
Q ss_conf             999987121
Q 030634          140 LHKHGINQQ  148 (174)
Q Consensus       140 L~~~~~~~~  148 (174)
                      ++.++...+
T Consensus       226 l~~ll~~~~  234 (315)
T d2h6fa1         226 LKGILQDRG  234 (315)
T ss_dssp             HHHHHTTTC
T ss_pred             HHHHHHHCC
T ss_conf             877988627

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=6.1e-17  Score=105.22  Aligned_cols=101  Identities=11%  Similarity=0.083  Sum_probs=95.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf             68864669999999999995099999999999999999337543001131099999999999973999999999999999
Q 030634            7 DFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAH   86 (174)
Q Consensus         7 ~~~~~~~~~eA~~~~~~al~~~P~~~~~~~~lg~al~~~~~~~~~~~~~~~~~eAi~~~e~Al~ldP~~~~a~~nLG~a~   86 (174)
                      .+=..+.|++|+..+.+++..+|+++.+|.++|.++..++++          ++|+..++++++++|+++.+|+++|.++
T Consensus        12 ~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~----------~~A~~~~~~al~~~p~~~~~~~~~g~~~   81 (117)
T d1elwa_          12 KALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDY----------QKAYEDGCKTVDLKPDWGKGYSRKAAAL   81 (117)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCCC----------CCCCHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf             999969999999999998861996013430001101100001----------1210013467774022026778899999


Q ss_pred             HHCCCCCCCHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf             858977656266425999999999999984999899999995
Q 030634           87 TSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLE  128 (174)
Q Consensus        87 ~~~g~~~~~~~~~~~~~~eA~~~~~kAl~l~P~~~~~~~Al~  128 (174)
                      ..+|           ++++|+..|+++++++|+++.+...+.
T Consensus        82 ~~~~-----------~~~~A~~~~~~a~~~~p~~~~~~~~l~  112 (117)
T d1elwa_          82 EFLN-----------RFEEAKRTYEEGLKHEANNPQLKEGLQ  112 (117)
T ss_dssp             HHTT-----------CHHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred             HHCC-----------CHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf             9812-----------799999999999984989899999999

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=7.7e-17  Score=104.68  Aligned_cols=100  Identities=15%  Similarity=0.136  Sum_probs=93.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf             68864669999999999995099999999999999999337543001131099999999999973999999999999999
Q 030634            7 DFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAH   86 (174)
Q Consensus         7 ~~~~~~~~~eA~~~~~~al~~~P~~~~~~~~lg~al~~~~~~~~~~~~~~~~~eAi~~~e~Al~ldP~~~~a~~nLG~a~   86 (174)
                      .|-+.+.|++|+..++++++.+|+++.+|.++|.++..+|++          ++|+..|+++++++|+++.+|+++|.++
T Consensus        19 ~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~----------~~A~~~~~kal~~~p~~~~a~~~~g~~~   88 (159)
T d1a17a_          19 DYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECY----------GYALGDATRAIELDKKYIKGYYRRAASN   88 (159)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCC----------CHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf             999958999999986602110001133324567888740542----------1288889999987544668779999999


Q ss_pred             HHCCCCCCCHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf             85897765626642599999999999998499989999999
Q 030634           87 TSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSL  127 (174)
Q Consensus        87 ~~~g~~~~~~~~~~~~~~eA~~~~~kAl~l~P~~~~~~~Al  127 (174)
                      ..+|           ++++|+.+|+++++++|++......+
T Consensus        89 ~~~g-----------~~~eA~~~~~~a~~~~p~~~~~~~~l  118 (159)
T d1a17a_          89 MALG-----------KFRAALRDYETVVKVKPHDKDAKMKY  118 (159)
T ss_dssp             HHTT-----------CHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             HHCC-----------CHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf             9949-----------99999998999987299979999999

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.73  E-value=1.2e-17  Score=108.93  Aligned_cols=94  Identities=18%  Similarity=0.148  Sum_probs=89.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf             68864669999999999995099999999999999999337543001131099999999999973999999999999999
Q 030634            7 DFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAH   86 (174)
Q Consensus         7 ~~~~~~~~~eA~~~~~~al~~~P~~~~~~~~lg~al~~~~~~~~~~~~~~~~~eAi~~~e~Al~ldP~~~~a~~nLG~a~   86 (174)
                      -|-+.+.|++|+..+++++.++|+++.+|.++|.++..+|++          ++|+..|++|++++|+++.+|+++|.++
T Consensus        13 ~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~----------~~Ai~~~~~al~l~p~~~~a~~~lg~~~   82 (201)
T d2c2la1          13 RLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQP----------EQALADCRRALELDGQSVKAHFFLGQCQ   82 (201)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf             999869999999999999985999899998178987410000----------0124788888871887389999999999


Q ss_pred             HHCCCCCCCHHHHHCCHHHHHHHHHHHHHHCCCCH
Q ss_conf             85897765626642599999999999998499989
Q 030634           87 TSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (174)
Q Consensus        87 ~~~g~~~~~~~~~~~~~~eA~~~~~kAl~l~P~~~  121 (174)
                      ..+|           ++++|+.+|++|++++|++.
T Consensus        83 ~~l~-----------~~~~A~~~~~~al~l~p~~~  106 (201)
T d2c2la1          83 LEME-----------SYDEAIANLQRAYSLAKEQR  106 (201)
T ss_dssp             HHTT-----------CHHHHHHHHHHHHHHHHHTT
T ss_pred             HHCC-----------CHHHHHHHHHHHHHHCCCCH
T ss_conf             9879-----------99999999999987495567

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=2.5e-16  Score=101.98  Aligned_cols=133  Identities=19%  Similarity=0.212  Sum_probs=99.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHH---------------------------------
Q ss_conf             68864669999999999995099999999999999999337543001---------------------------------
Q 030634            7 DFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSD---------------------------------   53 (174)
Q Consensus         7 ~~~~~~~~~eA~~~~~~al~~~P~~~~~~~~lg~al~~~~~~~~~~~---------------------------------   53 (174)
                      -|..++.+++|+..+.++++++|+++..+..+|.++...+++..+..                                 
T Consensus        62 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (323)
T d1fcha_          62 TQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKR  141 (323)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------C
T ss_pred             HHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHH
T ss_conf             99983775889999985100222222222222222222221121110002677736106788876640000000100001


Q ss_pred             ------HHHHHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHCCCCCCCHHHHHCCHHHHHHHHHHHHHHCCCCH----
Q ss_conf             ------1310999999999999739999--9999999999985897765626642599999999999998499989----
Q 030634           54 ------SKKIINEAISKFEEALVIDPAK--HYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE----  121 (174)
Q Consensus        54 ------~~~~~~eAi~~~e~Al~ldP~~--~~a~~nLG~a~~~~g~~~~~~~~~~~~~~eA~~~~~kAl~l~P~~~----  121 (174)
                            ..+.+.+|+..|+++++++|+.  +.+++++|.++...|           ++++|+.+|++++..+|++.    
T Consensus       142 ~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~-----------~~~~A~~~~~~al~~~p~~~~~~~  210 (323)
T d1fcha_         142 ILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSG-----------EYDKAVDCFTAALSVRPNDYLLWN  210 (323)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH-----------HHHHHHCCCCCCCCCCCCCCCCHH
T ss_conf             478888765799999999999997130122211103688888888-----------775500211122222222211101


Q ss_pred             -----------------HHHHHHHCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf             -----------------99999950999948899999998712125
Q 030634          122 -----------------LYQKSLEVSTKAPELHMELHKHGINQQTL  150 (174)
Q Consensus       122 -----------------~~~~Al~~~~~~~~~~~~L~~~~~~~~~~  150 (174)
                                       .|+++++++|..+.++.++|.++...|+.
T Consensus       211 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~  256 (323)
T d1fcha_         211 KLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAH  256 (323)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred             HHHHCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCH
T ss_conf             3330122111101378887789988432499999999999987899

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=7.1e-16  Score=99.59  Aligned_cols=104  Identities=13%  Similarity=0.112  Sum_probs=90.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC--HHHHHHHH
Q ss_conf             3688646699999999999950999999999999999993375430011310999999999999739999--99999999
Q 030634            6 SDFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAK--HYTLWSLG   83 (174)
Q Consensus         6 ~~~~~~~~~~eA~~~~~~al~~~P~~~~~~~~lg~al~~~~~~~~~~~~~~~~~eAi~~~e~Al~ldP~~--~~a~~nLG   83 (174)
                      +.+-.+..+++|.+.|++++..+|+++++++++|.+++..++.       +.+++||..|++++..+|.+  .++|+++|
T Consensus         7 n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~-------~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg   79 (122)
T d1nzna_           7 NELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYN-------DDIRKGIVLLEELLPKGSKEEQRDYVFYLA   79 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSH-------HHHHHHHHHHHHHTTTSCHHHHHHHHHHHH
T ss_pred             HHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCH-------HHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf             8736999999999999998832999899999999999985126-------789999999999986069931999999999


Q ss_pred             HHHHHCCCCCCCHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf             99985897765626642599999999999998499989999999
Q 030634           84 NAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSL  127 (174)
Q Consensus        84 ~a~~~~g~~~~~~~~~~~~~~eA~~~~~kAl~l~P~~~~~~~Al  127 (174)
                      .+|..+|           ++++|+.+|+++++++|++...+...
T Consensus        80 ~~y~~~g-----------~~~~A~~~~~~aL~~~P~~~~A~~l~  112 (122)
T d1nzna_          80 VGNYRLK-----------EYEKALKYVRGLLQTEPQNNQAKELE  112 (122)
T ss_dssp             HHHHHTT-----------CHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHH-----------HHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf             9999973-----------16999999999997690989999999

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.66  E-value=2.6e-15  Score=96.65  Aligned_cols=131  Identities=12%  Similarity=0.004  Sum_probs=118.9

Q ss_pred             HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC
Q ss_conf             46699999999999950999999999999999993375430011310999999999999739999999999999998589
Q 030634           11 LLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCG   90 (174)
Q Consensus        11 ~~~~~eA~~~~~~al~~~P~~~~~~~~lg~al~~~~~~~~~~~~~~~~~eAi~~~e~Al~ldP~~~~a~~nLG~a~~~~g   90 (174)
                      ....++|+..+++++..+|+++.+|..++.++..++.........+.+.+|+..++++++.+|+++.+|+.+|.++...+
T Consensus        42 ~~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~  121 (334)
T d1dcea1          42 GELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLP  121 (334)
T ss_dssp             TCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCS
T ss_pred             CCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC
T ss_conf             65669999999999998878589999999999997650034778778999999999999868886798988648998843


Q ss_pred             CCCCCHHHHHCCHHHHHHHHHHHHHHCCCCH----------------------HHHHHHHCCCCCHHHHHHHHHHHHHCC
Q ss_conf             7765626642599999999999998499989----------------------999999509999488999999987121
Q 030634           91 FLTADLSEAKGDFDKASECFQRAVDEEPTNE----------------------LYQKSLEVSTKAPELHMELHKHGINQQ  148 (174)
Q Consensus        91 ~~~~~~~~~~~~~~eA~~~~~kAl~l~P~~~----------------------~~~~Al~~~~~~~~~~~~L~~~~~~~~  148 (174)
                               ..++++|+..++++++++|.+.                      .+++++.++|..+.++.+++.++...|
T Consensus       122 ---------~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~  192 (334)
T d1dcea1         122 ---------EPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLH  192 (334)
T ss_dssp             ---------SCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHS
T ss_pred             ---------CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHC
T ss_conf             ---------04289999999999855921211110578999874455289999999988718987999999999999826


Q ss_pred             CC
Q ss_conf             25
Q 030634          149 TL  150 (174)
Q Consensus       149 ~~  150 (174)
                      +.
T Consensus       193 ~~  194 (334)
T d1dcea1         193 PQ  194 (334)
T ss_dssp             CC
T ss_pred             CH
T ss_conf             88

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.63  E-value=1e-14  Score=93.44  Aligned_cols=114  Identities=24%  Similarity=0.160  Sum_probs=95.3

Q ss_pred             HHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf             699999999999950----9999999999999999933754300113109999999999997399999999999999985
Q 030634           13 LSEHNRKTAEANYAK----DPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTS   88 (174)
Q Consensus        13 ~~~eA~~~~~~al~~----~P~~~~~~~~lg~al~~~~~~~~~~~~~~~~~eAi~~~e~Al~ldP~~~~a~~nLG~a~~~   88 (174)
                      ..+.++..++..+..    +|..+.+++.+|.++...|++          ++|+..|+++++++|+++.+|+++|.++..
T Consensus        14 ~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~----------~~A~~~~~~al~l~p~~~~a~~~lg~~~~~   83 (259)
T d1xnfa_          14 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLR----------ALARNDFSQALAIRPDMPEVFNYLGIYLTQ   83 (259)
T ss_dssp             HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHCCCCCCHHHHHHHCHHHHH
T ss_conf             9999999999998763369999999999999999987999----------999999998543499988999600427888


Q ss_pred             CCCCCCCHHHHHCCHHHHHHHHHHHHHHCCCCH---------------------HHHHHHHCCCCCHHHHHHHHHHHHHC
Q ss_conf             897765626642599999999999998499989---------------------99999950999948899999998712
Q 030634           89 CGFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELHKHGINQ  147 (174)
Q Consensus        89 ~g~~~~~~~~~~~~~~eA~~~~~kAl~l~P~~~---------------------~~~~Al~~~~~~~~~~~~L~~~~~~~  147 (174)
                      +|           ++++|+.+|+++++++|++.                     .|+++++++|..+..+..++......
T Consensus        84 ~g-----------~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~  152 (259)
T d1xnfa_          84 AG-----------NFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKL  152 (259)
T ss_dssp             TT-----------CHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf             77-----------7887523446899987611115888999999876679999999999865300078889999999885

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=1e-15  Score=98.78  Aligned_cols=120  Identities=13%  Similarity=-0.006  Sum_probs=93.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf             68864669999999999995099999999999999999337543001131099999999999973999999999999999
Q 030634            7 DFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAH   86 (174)
Q Consensus         7 ~~~~~~~~~eA~~~~~~al~~~P~~~~~~~~lg~al~~~~~~~~~~~~~~~~~eAi~~~e~Al~ldP~~~~a~~nLG~a~   86 (174)
                      .+-..+.|++|+..+.+   ..|.++.+|+++|.++..+|++          ++|+..|++|+++||+++.+|+++|.++
T Consensus        14 ~~~~~~d~~~Al~~~~~---i~~~~~~~~~nlG~~~~~~g~~----------~~A~~~~~kAl~ldp~~~~a~~~~g~~~   80 (192)
T d1hh8a_          14 LAADKKDWKGALDAFSA---VQDPHSRICFNIGCMYTILKNM----------TEAEKAFTRSINRDKHLAVAYFQRGMLY   80 (192)
T ss_dssp             HHHHTTCHHHHHHHHHT---SSSCCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHH---CCCCCHHHHHHHHHHHHHCCCC----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99987799999999986---4898899999999999985891----------4678789999998552346678899999


Q ss_pred             HHCCCCCCCHHHHHCCHHHHHHHHHHHHHHCCCCHH---HHHHHHCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf             858977656266425999999999999984999899---9999950999948899999998712125
Q 030634           87 TSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNEL---YQKSLEVSTKAPELHMELHKHGINQQTL  150 (174)
Q Consensus        87 ~~~g~~~~~~~~~~~~~~eA~~~~~kAl~l~P~~~~---~~~Al~~~~~~~~~~~~L~~~~~~~~~~  150 (174)
                      ..+|           ++++|+..|++|+...|.+..   ...++.......+.+.+++.++...+..
T Consensus        81 ~~~g-----------~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~  136 (192)
T d1hh8a_          81 YQTE-----------KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEW  136 (192)
T ss_dssp             HHTT-----------CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCH
T ss_pred             HHHC-----------CHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCH
T ss_conf             8542-----------4999999999999867267367899866543630588999999999997899

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=2.7e-14  Score=91.26  Aligned_cols=101  Identities=20%  Similarity=0.188  Sum_probs=90.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCC---------------HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             6886466999999999999509999---------------9999999999999337543001131099999999999973
Q 030634            7 DFDRLLLSEHNRKTAEANYAKDPLD---------------ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVI   71 (174)
Q Consensus         7 ~~~~~~~~~eA~~~~~~al~~~P~~---------------~~~~~~lg~al~~~~~~~~~~~~~~~~~eAi~~~e~Al~l   71 (174)
                      .|=+.+.|++|+..|++++...|..               ..++.++|.++..++++          ++|+..+++++++
T Consensus        22 ~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~----------~~A~~~~~~al~~   91 (170)
T d1p5qa1          22 VYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAF----------SAAIESCNKALEL   91 (170)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCHHHHHHHHHHHHHHHHHHHC----------CCCCCHHHHHHHC
T ss_conf             999969999999999999887510100035777640646799999999998864211----------0110000000100


Q ss_pred             CCCCHHHHHHHHHHHHHCCCCCCCHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf             999999999999999858977656266425999999999999984999899999995
Q 030634           72 DPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLE  128 (174)
Q Consensus        72 dP~~~~a~~nLG~a~~~~g~~~~~~~~~~~~~~eA~~~~~kAl~l~P~~~~~~~Al~  128 (174)
                      +|+++.+|+++|.++..+|           ++++|+.+|+++++++|++......+.
T Consensus        92 ~p~~~~a~~~~g~~~~~~g-----------~~~~A~~~~~~al~l~P~n~~~~~~l~  137 (170)
T d1p5qa1          92 DSNNEKGLSRRGEAHLAVN-----------DFELARADFQKVLQLYPNNKAAKTQLA  137 (170)
T ss_dssp             CTTCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf             2231034677799998722-----------299999999999972989899999999

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.58  E-value=9.6e-15  Score=93.62  Aligned_cols=101  Identities=21%  Similarity=0.256  Sum_probs=88.6

Q ss_pred             HHHHHHHHHHHHHHHHHHH----------------HCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             8864669999999999995----------------099999999999999999337543001131099999999999973
Q 030634            8 FDRLLLSEHNRKTAEANYA----------------KDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVI   71 (174)
Q Consensus         8 ~~~~~~~~eA~~~~~~al~----------------~~P~~~~~~~~lg~al~~~~~~~~~~~~~~~~~eAi~~~e~Al~l   71 (174)
                      |-+.+.|++|+..+.+++.                .+|....++.++|.++..++++          ++||..+++|+++
T Consensus        37 ~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~----------~~Ai~~~~~al~~  106 (169)
T d1ihga1          37 FFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDW----------QGAVDSCLEALEI  106 (169)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHTT
T ss_pred             HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCC----------CHHHHHHHHHHHH
T ss_conf             999088999999999998741111666655778771902399999899999864021----------0136665544310


Q ss_pred             CCCCHHHHHHHHHHHHHCCCCCCCHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHC
Q ss_conf             9999999999999998589776562664259999999999999849998999999950
Q 030634           72 DPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLEV  129 (174)
Q Consensus        72 dP~~~~a~~nLG~a~~~~g~~~~~~~~~~~~~~eA~~~~~kAl~l~P~~~~~~~Al~~  129 (174)
                      +|+++.+|+++|.++..+|           ++++|+..|+++++++|++......+..
T Consensus       107 ~p~~~~a~~~~g~~~~~l~-----------~~~~A~~~~~~al~l~p~n~~~~~~l~~  153 (169)
T d1ihga1         107 DPSNTKALYRRAQGWQGLK-----------EYDQALADLKKAQEIAPEDKAIQAELLK  153 (169)
T ss_dssp             CTTCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf             0022367776999999804-----------7999999999999859899999999999

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.56  E-value=1.2e-14  Score=93.13  Aligned_cols=87  Identities=18%  Similarity=0.127  Sum_probs=82.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf             68864669999999999995099999999999999999337543001131099999999999973999999999999999
Q 030634            7 DFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAH   86 (174)
Q Consensus         7 ~~~~~~~~~eA~~~~~~al~~~P~~~~~~~~lg~al~~~~~~~~~~~~~~~~~eAi~~~e~Al~ldP~~~~a~~nLG~a~   86 (174)
                      .+.+.+.+++|+..+++++..+|+++.+|.++|.++...+++          ++|+..|+++++++|+++.+|+++|.++
T Consensus        25 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~----------~~A~~~~~~al~~~p~~~~a~~~la~~y   94 (112)
T d1hxia_          25 SMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKD----------GLAIIALNHARMLDPKDIAVHAALAVSH   94 (112)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH----------HHHHCCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf             999876058999988610112111100123354564101258----------7741000001111110000037899999


Q ss_pred             HHCCCCCCCHHHHHCCHHHHHHHHHHHH
Q ss_conf             8589776562664259999999999999
Q 030634           87 TSCGFLTADLSEAKGDFDKASECFQRAV  114 (174)
Q Consensus        87 ~~~g~~~~~~~~~~~~~~eA~~~~~kAl  114 (174)
                      ..+|           ++++|++++++.|
T Consensus        95 ~~~g-----------~~~~A~~~l~~~l  111 (112)
T d1hxia_          95 TNEH-----------NANAALASLRAWL  111 (112)
T ss_dssp             HHHH-----------HHHHHHHHHHHHH
T ss_pred             HHCC-----------CHHHHHHHHHHHH
T ss_conf             9978-----------9999999999981

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.55  E-value=7.3e-14  Score=88.99  Aligned_cols=102  Identities=18%  Similarity=0.131  Sum_probs=88.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCH----------------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             68864669999999999995099999----------------99999999999933754300113109999999999997
Q 030634            7 DFDRLLLSEHNRKTAEANYAKDPLDA----------------DNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALV   70 (174)
Q Consensus         7 ~~~~~~~~~eA~~~~~~al~~~P~~~----------------~~~~~lg~al~~~~~~~~~~~~~~~~~eAi~~~e~Al~   70 (174)
                      .+-+.+.|.+|+..|++++..-|...                .++.++|.++..++++          ++|+..++++++
T Consensus        26 ~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~----------~~Al~~~~~al~   95 (153)
T d2fbna1          26 EFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDY----------PKAIDHASKVLK   95 (153)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC----------CHHHHHHHCCCC
T ss_conf             9999599999999999877607300111057788763107889996199999984653----------011101000100


Q ss_pred             HCCCCHHHHHHHHHHHHHCCCCCCCHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHC
Q ss_conf             39999999999999998589776562664259999999999999849998999999950
Q 030634           71 IDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLEV  129 (174)
Q Consensus        71 ldP~~~~a~~nLG~a~~~~g~~~~~~~~~~~~~~eA~~~~~kAl~l~P~~~~~~~Al~~  129 (174)
                      ++|++..+|+++|.++..+|           ++++|+.+|+++++++|++.....-+..
T Consensus        96 ~~p~~~ka~~~~g~~~~~lg-----------~~~~A~~~~~~al~l~P~n~~~~~~l~~  143 (153)
T d2fbna1          96 IDKNNVKALYKLGVANMYFG-----------FLEEAKENLYKAASLNPNNLDIRNSYEL  143 (153)
T ss_dssp             HSTTCHHHHHHHHHHHHHHT-----------CHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf             00000124677689999968-----------9999999999999829898999999999

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.53  E-value=1.1e-13  Score=88.07  Aligned_cols=102  Identities=15%  Similarity=0.158  Sum_probs=88.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCC---------------CHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             688646699999999999950999---------------99999999999999337543001131099999999999973
Q 030634            7 DFDRLLLSEHNRKTAEANYAKDPL---------------DADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVI   71 (174)
Q Consensus         7 ~~~~~~~~~eA~~~~~~al~~~P~---------------~~~~~~~lg~al~~~~~~~~~~~~~~~~~eAi~~~e~Al~l   71 (174)
                      .+-+.+.|.+|+..|.+++..-|.               ...++.++|.++..++++          .+|+..+++++++
T Consensus        24 ~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~----------~~Ai~~~~~al~l   93 (168)
T d1kt1a1          24 VYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREY----------TKAVECCDKALGL   93 (168)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHC----------CCCHHHHHHHHHC
T ss_conf             999959999999999999999987500124555310646799998499998776220----------1100022322201


Q ss_pred             CCCCHHHHHHHHHHHHHCCCCCCCHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHC
Q ss_conf             9999999999999998589776562664259999999999999849998999999950
Q 030634           72 DPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLEV  129 (174)
Q Consensus        72 dP~~~~a~~nLG~a~~~~g~~~~~~~~~~~~~~eA~~~~~kAl~l~P~~~~~~~Al~~  129 (174)
                      +|++..+|+++|.++..+|           ++++|+.+|+++++++|++......+..
T Consensus        94 ~p~~~~a~~~~~~~~~~l~-----------~~~~A~~~~~~al~l~P~n~~~~~~l~~  140 (168)
T d1kt1a1          94 DSANEKGLYRRGEAQLLMN-----------EFESAKGDFEKVLEVNPQNKAARLQIFM  140 (168)
T ss_dssp             CTTCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf             3104889998899998827-----------8999999999999859898999999999

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=1.6e-14  Score=92.49  Aligned_cols=102  Identities=14%  Similarity=0.178  Sum_probs=87.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf             68864669999999999995099999999999999999337543001131099999999999973999999999999999
Q 030634            7 DFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAH   86 (174)
Q Consensus         7 ~~~~~~~~~eA~~~~~~al~~~P~~~~~~~~lg~al~~~~~~~~~~~~~~~~~eAi~~~e~Al~ldP~~~~a~~nLG~a~   86 (174)
                      .|-+.+.|++|+..+.++++++|+++.++.++|.++..++++          ++|+..++++++++|+++.+|.++|.+|
T Consensus        13 ~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~----------~~A~~~~~~al~l~~~~~~~~~~~a~~~   82 (128)
T d1elra_          13 DAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDY----------NKCRELCEKAIEVGRENREDYRQIAKAY   82 (128)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH----------HHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf             999859999999999999884964589998688999881860----------7789999999986801278898899999


Q ss_pred             HHCCCCCCCHHHHHCCHHHHHHHHHHHHHHCCCCHH
Q ss_conf             858977656266425999999999999984999899
Q 030634           87 TSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNEL  122 (174)
Q Consensus        87 ~~~g~~~~~~~~~~~~~~eA~~~~~kAl~l~P~~~~  122 (174)
                      ..+|    ......+++++|+.+|++++..+|+...
T Consensus        83 ~~lg----~~~~~~~~~~~A~~~~~kal~~~~~~~~  114 (128)
T d1elra_          83 ARIG----NSYFKEEKYKDAIHFYNKSLAEHRTPDV  114 (128)
T ss_dssp             HHHH----HHHHHTTCHHHHHHHHHHHHHHCCCHHH
T ss_pred             HHHH----HHHHHHCCHHHHHHHHHHHHHCCCCHHH
T ss_conf             9999----9999938899999999999845999999

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=1.2e-13  Score=87.80  Aligned_cols=92  Identities=25%  Similarity=0.387  Sum_probs=82.4

Q ss_pred             HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCHHHHHCCHHHHHHHHH
Q ss_conf             99999999999993375430011310999999999999739999999999999998589776562664259999999999
Q 030634           32 ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQ  111 (174)
Q Consensus        32 ~~~~~~lg~al~~~~~~~~~~~~~~~~~eAi~~~e~Al~ldP~~~~a~~nLG~a~~~~g~~~~~~~~~~~~~~eA~~~~~  111 (174)
                      .+-+...|..++..|++          ++|+..|+++++++|+++.+|+++|.++..+|           ++++|+..|.
T Consensus         3 ~~~l~~~g~~~~~~g~~----------~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~-----------~~~~A~~~~~   61 (117)
T d1elwa_           3 VNELKEKGNKALSVGNI----------DDALQCYSEAIKLDPHNHVLYSNRSAAYAKKG-----------DYQKAYEDGC   61 (117)
T ss_dssp             HHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT-----------CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCC-----------CCCCCCHHHH
T ss_conf             99999999999996999----------99999999988619960134300011011000-----------0112100134


Q ss_pred             HHHHHCCCCH---------------------HHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf             9998499989---------------------99999950999948899999998
Q 030634          112 RAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELHKHG  144 (174)
Q Consensus       112 kAl~l~P~~~---------------------~~~~Al~~~~~~~~~~~~L~~~~  144 (174)
                      ++++++|++.                     .|+++++++|..+.++.+++++-
T Consensus        62 ~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~  115 (117)
T d1elwa_          62 KTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME  115 (117)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf             677740220267788999999812799999999999984989899999999783

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=3e-13  Score=85.77  Aligned_cols=92  Identities=14%  Similarity=0.199  Sum_probs=80.9

Q ss_pred             HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCHHHHHCCHHHHHHHHH
Q ss_conf             99999999999993375430011310999999999999739999999999999998589776562664259999999999
Q 030634           32 ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQ  111 (174)
Q Consensus        32 ~~~~~~lg~al~~~~~~~~~~~~~~~~~eAi~~~e~Al~ldP~~~~a~~nLG~a~~~~g~~~~~~~~~~~~~~eA~~~~~  111 (174)
                      ++.+...|+.++..|+|          ++|+..|+++++++|+++.+|+++|.++..+|           ++++|+..|+
T Consensus        10 a~~l~~~gn~~~~~~~y----------~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~-----------~~~~A~~~~~   68 (159)
T d1a17a_          10 AEELKTQANDYFKAKDY----------ENAIKFYSQAIELNPSNAIYYGNRSLAYLRTE-----------CYGYALGDAT   68 (159)
T ss_dssp             HHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTT-----------CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCH----------HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCC-----------CCCHHHHHHH
T ss_conf             99999999999995899----------99999866021100011333245678887405-----------4212888899


Q ss_pred             HHHHHCCCCH---------------------HHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf             9998499989---------------------99999950999948899999998
Q 030634          112 RAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELHKHG  144 (174)
Q Consensus       112 kAl~l~P~~~---------------------~~~~Al~~~~~~~~~~~~L~~~~  144 (174)
                      ++++++|++.                     .|++++.+.|..+..+..+..+.
T Consensus        69 kal~~~p~~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~  122 (159)
T d1a17a_          69 RAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECN  122 (159)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf             999875446687799999999949999999989999872999799999999999

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.49  E-value=1.5e-13  Score=87.39  Aligned_cols=97  Identities=10%  Similarity=-0.046  Sum_probs=67.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHH-HHHHH
Q ss_conf             36886466999999999999509999999999999999933754300113109999999999997399999999-99999
Q 030634            6 SDFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTL-WSLGN   84 (174)
Q Consensus         6 ~~~~~~~~~~eA~~~~~~al~~~P~~~~~~~~lg~al~~~~~~~~~~~~~~~~~eAi~~~e~Al~ldP~~~~a~-~nLG~   84 (174)
                      +-+.+.+.+++++..+++++..+|.++.+|+.+|.++...++..        +++|+..++++++++|++..++ +.+|.
T Consensus        81 ~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~--------~~~a~~~~~~al~~~~~~~~~~~~~~~~  152 (334)
T d1dcea1          81 SPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPN--------WARELELCARFLEADERNFHCWDYRRFV  152 (334)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCC--------HHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCC--------HHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf             34778778999999999999868886798988648998843042--------8999999999985592121111057899


Q ss_pred             HHHHCCCCCCCHHHHHCCHHHHHHHHHHHHHHCCCCH
Q ss_conf             9985897765626642599999999999998499989
Q 030634           85 AHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (174)
Q Consensus        85 a~~~~g~~~~~~~~~~~~~~eA~~~~~kAl~l~P~~~  121 (174)
                      ++...+           .+++|+.+++++++++|++.
T Consensus       153 ~~~~~~-----------~~~~Al~~~~~~i~~~p~~~  178 (334)
T d1dcea1         153 AAQAAV-----------APAEELAFTDSLITRNFSNY  178 (334)
T ss_dssp             HHHTCC-----------CHHHHHHHHHTTTTTTCCCH
T ss_pred             HHHHCC-----------CCHHHHHHHHHHHHCCCCCH
T ss_conf             987445-----------52899999999887189879

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=4.2e-13  Score=84.96  Aligned_cols=100  Identities=16%  Similarity=0.148  Sum_probs=88.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC-----------
Q ss_conf             688646699999999999950999999999999999993375430011310999999999999739999-----------
Q 030634            7 DFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAK-----------   75 (174)
Q Consensus         7 ~~~~~~~~~eA~~~~~~al~~~P~~~~~~~~lg~al~~~~~~~~~~~~~~~~~eAi~~~e~Al~ldP~~-----------   75 (174)
                      -|-.++.+++|+..++++++++|+++.+++++|.++..+|++          ++|+..|++|+...|.+           
T Consensus        45 ~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~----------~~A~~~~~kAl~~~~~n~~~~~~~~~~~  114 (192)
T d1hh8a_          45 MYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKY----------DLAIKDLKEALIQLRGNQLIDYKILGLQ  114 (192)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHTTTTCSEEECGGGTBC
T ss_pred             HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH----------HHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf             999858914678789999998552346678899999854249----------9999999999986726736789986654


Q ss_pred             -----HHHHHHHHHHHHHCCCCCCCHHHHHCCHHHHHHHHHHHHHHCCCCH--HHHHHH
Q ss_conf             -----9999999999985897765626642599999999999998499989--999999
Q 030634           76 -----HYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE--LYQKSL  127 (174)
Q Consensus        76 -----~~a~~nLG~a~~~~g~~~~~~~~~~~~~~eA~~~~~kAl~l~P~~~--~~~~Al  127 (174)
                           .++++++|.++..+|           ++++|++.+++|+++.|+..  .+.+|+
T Consensus       115 ~~~~~~e~~~n~a~~~~~~~-----------~~~~A~~~l~~A~~~~~~~~~~~~~~Al  162 (192)
T d1hh8a_         115 FKLFACEVLYNIAFMYAKKE-----------EWKKAEEQLALATSMKSEPRHSKIDKAM  162 (192)
T ss_dssp             CEEEHHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHTTCCSGGGGHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHHCCCCCCHHHHHHHH
T ss_conf             36305889999999999978-----------9999999999998369980407999999

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.49  E-value=3.1e-14  Score=90.94  Aligned_cols=83  Identities=14%  Similarity=0.139  Sum_probs=74.6

Q ss_pred             CCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCHHHHHCCHHHHHHH
Q ss_conf             99999999999999933754300113109999999999997399999999999999985897765626642599999999
Q 030634           30 LDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASEC  109 (174)
Q Consensus        30 ~~~~~~~~lg~al~~~~~~~~~~~~~~~~~eAi~~~e~Al~ldP~~~~a~~nLG~a~~~~g~~~~~~~~~~~~~~eA~~~  109 (174)
                      .+++.+...|..++..|+|          ++|+..|++|++++|+++.+|+++|.+|..+|           ++++|+.+
T Consensus         2 ~~a~~l~~~Gn~~~~~g~~----------~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~-----------~~~~Ai~~   60 (201)
T d2c2la1           2 PSAQELKEQGNRLFVGRKY----------PEAAACYGRAITRNPLVAVYYTNRALCYLKMQ-----------QPEQALAD   60 (201)
T ss_dssp             CCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT-----------CHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH-----------HHHHHHHH
T ss_conf             6499999999999986999----------99999999999859998999981789874100-----------00012478


Q ss_pred             HHHHHHHCCCCH---------------------HHHHHHHCCCCC
Q ss_conf             999998499989---------------------999999509999
Q 030634          110 FQRAVDEEPTNE---------------------LYQKSLEVSTKA  133 (174)
Q Consensus       110 ~~kAl~l~P~~~---------------------~~~~Al~~~~~~  133 (174)
                      |++|++++|++.                     .|++++.+.|..
T Consensus        61 ~~~al~l~p~~~~a~~~lg~~~~~l~~~~~A~~~~~~al~l~p~~  105 (201)
T d2c2la1          61 CRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ  105 (201)
T ss_dssp             HHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
T ss_conf             888887188738999999999998799999999999998749556

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=6.8e-14  Score=89.14  Aligned_cols=102  Identities=11%  Similarity=0.001  Sum_probs=66.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHH----------------------HHHHHHHHHHHHH
Q ss_conf             864669999999999995099999999999999999337543001----------------------1310999999999
Q 030634            9 DRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSD----------------------SKKIINEAISKFE   66 (174)
Q Consensus         9 ~~~~~~~eA~~~~~~al~~~P~~~~~~~~lg~al~~~~~~~~~~~----------------------~~~~~~eAi~~~e   66 (174)
                      ...+.|..++..+++++..+|++...+.++|..+...+++..+..                      ..+.+++|+..|+
T Consensus        97 ~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~LG~l~~~~~~~~~A~~~y~  176 (497)
T d1ya0a1          97 AASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLVHLGDIARYRNQTSQAESYYR  176 (497)
T ss_dssp             HHHHHHHHHHHHHTC-------------------------------CCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf             99999999999999987899113999998579987589999999999988278899999999999998024789999999


Q ss_pred             HHHHHCCCCHHHHHHHHHHHHHCCCCCCCHHHHHCCHHHHHHHHHHHHHHCCCCH
Q ss_conf             9997399999999999999985897765626642599999999999998499989
Q 030634           67 EALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (174)
Q Consensus        67 ~Al~ldP~~~~a~~nLG~a~~~~g~~~~~~~~~~~~~~eA~~~~~kAl~l~P~~~  121 (174)
                      +|++++|+++.+|++||.++...|           ++.+|+.+|.||+.++|.++
T Consensus       177 ~A~~l~P~~~~~~~~Lg~~~~~~~-----------~~~~A~~~y~ral~~~~~~~  220 (497)
T d1ya0a1         177 HAAQLVPSNGQPYNQLAILASSKG-----------DHLTTIFYYCRSIAVKFPFP  220 (497)
T ss_dssp             HHHHHCTTBSHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHSSSBCCH
T ss_pred             HHHHHCCCCHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHHCCCCCH
T ss_conf             999878996599999999999869-----------99999999999981799978

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.36  E-value=1.7e-12  Score=81.83  Aligned_cols=68  Identities=18%  Similarity=0.191  Sum_probs=52.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCHHHHHCCHHHHHHHHHHHHHHCCCCH
Q ss_conf             113109999999999997399999999999999985897765626642599999999999998499989
Q 030634           53 DSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (174)
Q Consensus        53 ~~~~~~~eAi~~~e~Al~ldP~~~~a~~nLG~a~~~~g~~~~~~~~~~~~~~eA~~~~~kAl~l~P~~~  121 (174)
                      +..+.+++|+..|+++++++|+++++++++|.++..++ .-+...+..+.+++|+.+|++|++++|++.
T Consensus         8 ~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~-~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~   75 (145)
T d1zu2a1           8 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELS-QFHSISDAKQMIQEAITKFEEALLIDPKKD   75 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HHSCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
T ss_conf             98736999999999998618831089999999998762-133336778878889999999887301205

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=1.5e-11  Score=76.74  Aligned_cols=69  Identities=19%  Similarity=0.313  Sum_probs=64.5

Q ss_pred             HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCHHHHHCCHHHHHHHHH
Q ss_conf             99999999999993375430011310999999999999739999999999999998589776562664259999999999
Q 030634           32 ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQ  111 (174)
Q Consensus        32 ~~~~~~lg~al~~~~~~~~~~~~~~~~~eAi~~~e~Al~ldP~~~~a~~nLG~a~~~~g~~~~~~~~~~~~~~eA~~~~~  111 (174)
                      +..+-.+|..++..++|          ++|+.+|+++++++|+++.+++++|.++..+|           +|++|+..++
T Consensus         4 a~~~k~~G~~~~~~~~y----------~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~-----------~~~~A~~~~~   62 (128)
T d1elra_           4 ALKEKELGNDAYKKKDF----------DTALKHYDKAKELDPTNMTYITNQAAVYFEKG-----------DYNKCRELCE   62 (128)
T ss_dssp             HHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT-----------CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC-----------CHHHHHHHHH
T ss_conf             89999999999985999----------99999999998849645899986889998818-----------6077899999


Q ss_pred             HHHHHCCCCH
Q ss_conf             9998499989
Q 030634          112 RAVDEEPTNE  121 (174)
Q Consensus       112 kAl~l~P~~~  121 (174)
                      ++++++|++.
T Consensus        63 ~al~l~~~~~   72 (128)
T d1elra_          63 KAIEVGRENR   72 (128)
T ss_dssp             HHHHHHHHST
T ss_pred             HHHHHCCCCH
T ss_conf             9998680127

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=4.6e-11  Score=74.23  Aligned_cols=96  Identities=15%  Similarity=0.207  Sum_probs=79.3

Q ss_pred             HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC---------------HHHHHHHHHHHHHCCCCCCCH
Q ss_conf             99999999999993375430011310999999999999739999---------------999999999998589776562
Q 030634           32 ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAK---------------HYTLWSLGNAHTSCGFLTADL   96 (174)
Q Consensus        32 ~~~~~~lg~al~~~~~~~~~~~~~~~~~eAi~~~e~Al~ldP~~---------------~~a~~nLG~a~~~~g~~~~~~   96 (174)
                      +..+...|..++..+++          ++|+..|++++.+.|..               ..++.|+|.+|+.+|      
T Consensus        13 a~~l~~~G~~~~~~~~~----------~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~------   76 (170)
T d1p5qa1          13 STIVKERGTVYFKEGKY----------KQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQ------   76 (170)
T ss_dssp             HHHHHHHHHHHHHHTCH----------HHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTT------
T ss_pred             HHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHHHHHCCCCCHHHHHHHCHHHHHHHHHHHHHHHHHH------
T ss_conf             99999999999996999----------99999999998875101000357776406467999999999988642------


Q ss_pred             HHHHCCHHHHHHHHHHHHHHCCCCH---------------------HHHHHHHCCCCCHHHHHHHHHHHHHCC
Q ss_conf             6642599999999999998499989---------------------999999509999488999999987121
Q 030634           97 SEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELHKHGINQQ  148 (174)
Q Consensus        97 ~~~~~~~~eA~~~~~kAl~l~P~~~---------------------~~~~Al~~~~~~~~~~~~L~~~~~~~~  148 (174)
                           ++++|+.+++++++++|++.                     .|++++.++|..+.+...++.+...+.
T Consensus        77 -----~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~  144 (170)
T d1p5qa1          77 -----AFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIR  144 (170)
T ss_dssp             -----CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHH
T ss_pred             -----HCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf             -----11011000000010022310346777999987222999999999999729898999999999999999

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.27  E-value=1.5e-12  Score=82.09  Aligned_cols=91  Identities=18%  Similarity=0.055  Sum_probs=78.1

Q ss_pred             HHHHHHHHHHHHHHHHHHCCCC------------HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCC---
Q ss_conf             6466999999999999509999------------9999999999999337543001131099999999999973999---
Q 030634           10 RLLLSEHNRKTAEANYAKDPLD------------ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPA---   74 (174)
Q Consensus        10 ~~~~~~eA~~~~~~al~~~P~~------------~~~~~~lg~al~~~~~~~~~~~~~~~~~eAi~~~e~Al~ldP~---   74 (174)
                      +.+.|++|+..|+++++++|+.            +.++.++|.++..+|++          ++|+..+++++++.|+   
T Consensus        21 ~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~----------~~A~~~~~~al~~~~~~~~   90 (156)
T d2hr2a1          21 VAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSF----------DEALHSADKALHYFNRRGE   90 (156)
T ss_dssp             HHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHHHHCC
T ss_pred             HCCCHHHHHHHHHHHHHHCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCC----------CHHHHHHHHHHHCCCCCCC
T ss_conf             859999999999999986844201020012102799999999999982863----------0015766435530431002


Q ss_pred             --------CHHHHHHHHHHHHHCCCCCCCHHHHHCCHHHHHHHHHHHHHHCCCCH
Q ss_conf             --------99999999999985897765626642599999999999998499989
Q 030634           75 --------KHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (174)
Q Consensus        75 --------~~~a~~nLG~a~~~~g~~~~~~~~~~~~~~eA~~~~~kAl~l~P~~~  121 (174)
                              ...+++++|.+|..+|           ++++|+.+|++|+++.|...
T Consensus        91 ~~~~~~~~~~~a~~~~g~~~~~lg-----------~~eeA~~~~~~Al~l~~~~~  134 (156)
T d2hr2a1          91 LNQDEGKLWISAVYSRALALDGLG-----------RGAEAMPEFKKVVEMIEERK  134 (156)
T ss_dssp             TTSTHHHHHHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHHHHCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHH
T ss_conf             455443112787752699999888-----------88888999999998668742

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=5.2e-12  Score=79.20  Aligned_cols=140  Identities=12%  Similarity=0.066  Sum_probs=77.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH-----------HHHHHHHCCCCCC--------------HHHHHHHHHHH
Q ss_conf             8864669999999999995099999999999-----------9999993375430--------------01131099999
Q 030634            8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRW-----------GEALLELSQFESV--------------SDSKKIINEAI   62 (174)
Q Consensus         8 ~~~~~~~~eA~~~~~~al~~~P~~~~~~~~l-----------g~al~~~~~~~~~--------------~~~~~~~~eAi   62 (174)
                      |..++.++++   |++++..+|+.+..+...           ...+....+....              ....+.++.|+
T Consensus        30 ~~~~~~l~ea---ye~~i~~dp~~a~~~~~e~~Lw~~~y~~~ie~~r~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai  106 (497)
T d1ya0a1          30 WTSRQALQDL---YQKMLVTDLEYALDKKVEQDLWNHAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLL  106 (497)
T ss_dssp             HHHHHHHHHH---HHHHHHHCHHHHHHHTHHHHHHHHHTHHHHHHHHHHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHCHHHHH---HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9997629999---9999874930199985799999999999999999856164584379999999999999999999999


Q ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHCCCC---------------------CCCHHHHHCCHHHHHHHHHHHHHHCCCCH
Q ss_conf             999999973999999999999999858977---------------------65626642599999999999998499989
Q 030634           63 SKFEEALVIDPAKHYTLWSLGNAHTSCGFL---------------------TADLSEAKGDFDKASECFQRAVDEEPTNE  121 (174)
Q Consensus        63 ~~~e~Al~ldP~~~~a~~nLG~a~~~~g~~---------------------~~~~~~~~~~~~eA~~~~~kAl~l~P~~~  121 (174)
                      ..++++..++|++..++.++|.++...|..                     .+....-.+++++|+.+|++|++++|++.
T Consensus       107 ~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~  186 (497)
T d1ya0a1         107 QELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNG  186 (497)
T ss_dssp             HHHTC-------------------------------CCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBS
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH
T ss_conf             99999878991139999985799875899999999999882788999999999999980247899999999998789965


Q ss_pred             ---------------------HHHHHHHCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf             ---------------------99999950999948899999998712125
Q 030634          122 ---------------------LYQKSLEVSTKAPELHMELHKHGINQQTL  150 (174)
Q Consensus       122 ---------------------~~~~Al~~~~~~~~~~~~L~~~~~~~~~~  150 (174)
                                           .|.+++.+.|..+.++.||+.++......
T Consensus       187 ~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~~~~  236 (497)
T d1ya0a1         187 QPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALES  236 (497)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             99999999999869999999999999817999789999999999875301

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.23  E-value=5.9e-11  Score=73.63  Aligned_cols=83  Identities=22%  Similarity=0.247  Sum_probs=70.5

Q ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCHHHHHCCHHHHHHHHHH
Q ss_conf             99999999999933754300113109999999999997399999999999999985897765626642599999999999
Q 030634           33 DNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQR  112 (174)
Q Consensus        33 ~~~~~lg~al~~~~~~~~~~~~~~~~~eAi~~~e~Al~ldP~~~~a~~nLG~a~~~~g~~~~~~~~~~~~~~eA~~~~~k  112 (174)
                      +.++.+|.++...|++          ++|+..|+++++++|+++.+|+++|.++...|           ++++|+.+|++
T Consensus        17 ~~~~~~g~~~~~~g~~----------~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~-----------~~~~A~~~~~~   75 (112)
T d1hxia_          17 ENPMEEGLSMLKLANL----------AEAALAFEAVCQKEPEREEAWRSLGLTQAENE-----------KDGLAIIALNH   75 (112)
T ss_dssp             SCHHHHHHHHHHTTCH----------HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTT-----------CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH----------HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH-----------HHHHHHCCCCC
T ss_conf             9999999999987605----------89999886101121111001233545641012-----------58774100000


Q ss_pred             HHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCC
Q ss_conf             9984999899999995099994889999999871212
Q 030634          113 AVDEEPTNELYQKSLEVSTKAPELHMELHKHGINQQT  149 (174)
Q Consensus       113 Al~l~P~~~~~~~Al~~~~~~~~~~~~L~~~~~~~~~  149 (174)
                      +++++|++.             .++.+|+.++..+|.
T Consensus        76 al~~~p~~~-------------~a~~~la~~y~~~g~   99 (112)
T d1hxia_          76 ARMLDPKDI-------------AVHAALAVSHTNEHN   99 (112)
T ss_dssp             HHHHCTTCH-------------HHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCC-------------CCHHHHHHHHHHCCC
T ss_conf             111111000-------------003789999999789

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=5.6e-11  Score=73.78  Aligned_cols=74  Identities=19%  Similarity=0.132  Sum_probs=65.3

Q ss_pred             CHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC-------HHHHHHHHHHHHHCCCCCCCHHHHHCCH
Q ss_conf             999999999999993375430011310999999999999739999-------9999999999985897765626642599
Q 030634           31 DADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAK-------HYTLWSLGNAHTSCGFLTADLSEAKGDF  103 (174)
Q Consensus        31 ~~~~~~~lg~al~~~~~~~~~~~~~~~~~eAi~~~e~Al~ldP~~-------~~a~~nLG~a~~~~g~~~~~~~~~~~~~  103 (174)
                      +++-.+.+|.++...|++          .+|+..|++|+++.|.+       ..++.++|.++..+|           ++
T Consensus         4 saddc~~lG~~~~~~g~y----------~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g-----------~~   62 (95)
T d1tjca_           4 TAEDSFELGKVAYTEADY----------YHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQG-----------DL   62 (95)
T ss_dssp             CHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTT-----------CH
T ss_pred             CHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC-----------CH
T ss_conf             699999999999997799----------999999999999886530147647899998726888657-----------73


Q ss_pred             HHHHHHHHHHHHHCCCCHHHHH
Q ss_conf             9999999999984999899999
Q 030634          104 DKASECFQRAVDEEPTNELYQK  125 (174)
Q Consensus       104 ~eA~~~~~kAl~l~P~~~~~~~  125 (174)
                      ++|+.+|+++++++|+++....
T Consensus        63 ~~A~~~y~~aL~l~P~~~~a~~   84 (95)
T d1tjca_          63 DKALLLTKKLLELDPEHQRANG   84 (95)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHCCCCHHHHH
T ss_conf             9888788779886929799999

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.15  E-value=6.5e-10  Score=68.14  Aligned_cols=92  Identities=17%  Similarity=0.178  Sum_probs=71.7

Q ss_pred             HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCH----------------HHHHHHHHHHHHCCCCCCC
Q ss_conf             999999999999933754300113109999999999997399999----------------9999999999858977656
Q 030634           32 ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKH----------------YTLWSLGNAHTSCGFLTAD   95 (174)
Q Consensus        32 ~~~~~~lg~al~~~~~~~~~~~~~~~~~eAi~~~e~Al~ldP~~~----------------~a~~nLG~a~~~~g~~~~~   95 (174)
                      +..+...|..++..++|          .+|+..|++|+.+.|...                .++.|+|.+|+.+|     
T Consensus        17 a~~~~~~G~~~f~~~~y----------~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~-----   81 (153)
T d2fbna1          17 AFDIKEEGNEFFKKNEI----------NEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNK-----   81 (153)
T ss_dssp             HHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTT-----
T ss_pred             HHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_conf             99999999999995999----------999999998776073001110577887631078899961999999846-----


Q ss_pred             HHHHHCCHHHHHHHHHHHHHHCCCCH---------------------HHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf             26642599999999999998499989---------------------99999950999948899999998
Q 030634           96 LSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELHKHG  144 (174)
Q Consensus        96 ~~~~~~~~~eA~~~~~kAl~l~P~~~---------------------~~~~Al~~~~~~~~~~~~L~~~~  144 (174)
                            ++++|+.+++++++++|++.                     .|++++.++|..+++...+..+.
T Consensus        82 ------~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~  145 (153)
T d2fbna1          82 ------DYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCV  145 (153)
T ss_dssp             ------CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             ------CCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf             ------5301110100010000000124677689999968999999999999982989899999999999

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=99.14  E-value=1.5e-10  Score=71.51  Aligned_cols=102  Identities=13%  Similarity=0.029  Sum_probs=86.2

Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC
Q ss_conf             64669999999999995099999999999999999337543001131099999999999973999999999999999858
Q 030634           10 RLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSC   89 (174)
Q Consensus        10 ~~~~~~eA~~~~~~al~~~P~~~~~~~~lg~al~~~~~~~~~~~~~~~~~eAi~~~e~Al~ldP~~~~a~~nLG~a~~~~   89 (174)
                      +.+.+++|+..++++++.+|+++..+..+|.++...|++          ++|+..|+++++++|++..++.+++.++...
T Consensus         8 ~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~----------e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~   77 (264)
T d1zbpa1           8 SEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDF----------ERADEQLMQSIKLFPEYLPGASQLRHLVKAA   77 (264)
T ss_dssp             TTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCH----------HHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC
T ss_conf             888999999999999997899999999999999987999----------9999999999986997389999999999834


Q ss_pred             C--------CC------CCCH----------HHHHCCHHHHHHHHHHHHHHCCCCH
Q ss_conf             9--------77------6562----------6642599999999999998499989
Q 030634           90 G--------FL------TADL----------SEAKGDFDKASECFQRAVDEEPTNE  121 (174)
Q Consensus        90 g--------~~------~~~~----------~~~~~~~~eA~~~~~kAl~l~P~~~  121 (174)
                      +        ..      .|..          .-..+++++|+..++++.++.|+..
T Consensus        78 ~~~~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~  133 (264)
T d1zbpa1          78 QARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKG  133 (264)
T ss_dssp             HHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCC
T ss_pred             CCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC
T ss_conf             66378998754442035864799999999999967998999999999983399998

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.12  E-value=1.8e-10  Score=71.08  Aligned_cols=91  Identities=20%  Similarity=0.368  Sum_probs=72.2

Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH----------------HCCCCHHHHHHHHHHHHHCCCCCCCHH
Q ss_conf             9999999999933754300113109999999999997----------------399999999999999985897765626
Q 030634           34 NLTRWGEALLELSQFESVSDSKKIINEAISKFEEALV----------------IDPAKHYTLWSLGNAHTSCGFLTADLS   97 (174)
Q Consensus        34 ~~~~lg~al~~~~~~~~~~~~~~~~~eAi~~~e~Al~----------------ldP~~~~a~~nLG~a~~~~g~~~~~~~   97 (174)
                      .+...|..++..+++          .+|+..|+++++                ++|....++.|+|.++..+|       
T Consensus        29 ~~~~~~~~~~~~~~y----------~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~-------   91 (169)
T d1ihga1          29 DLKNIGNTFFKSQNW----------EMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMS-------   91 (169)
T ss_dssp             HHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTT-------
T ss_pred             HHHHHHHHHHHCCCH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHC-------
T ss_conf             999999999990889----------999999999987411116666557787719023999998999998640-------


Q ss_pred             HHHCCHHHHHHHHHHHHHHCCCCH---------------------HHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf             642599999999999998499989---------------------999999509999488999999987
Q 030634           98 EAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELHKHGI  145 (174)
Q Consensus        98 ~~~~~~~eA~~~~~kAl~l~P~~~---------------------~~~~Al~~~~~~~~~~~~L~~~~~  145 (174)
                          ++++|+..|.++++++|+++                     .|+++++++|..+.++..|..+..
T Consensus        92 ----~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~  156 (169)
T d1ihga1          92 ----DWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQ  156 (169)
T ss_dssp             ----CHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             ----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf             ----21013666554431000223677769999998047999999999999859899999999999999

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=1.7e-10  Score=71.17  Aligned_cols=90  Identities=9%  Similarity=0.039  Sum_probs=67.0

Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCHHHHHCCHHHHHHHHHHHHH
Q ss_conf             99999999933754300113109999999999997399999999999999985897765626642599999999999998
Q 030634           36 TRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVD  115 (174)
Q Consensus        36 ~~lg~al~~~~~~~~~~~~~~~~~eAi~~~e~Al~ldP~~~~a~~nLG~a~~~~g~~~~~~~~~~~~~~eA~~~~~kAl~  115 (174)
                      .++...+...+++          ++|.+.|++++.++|+++++++|+|.++...+        ..+++++|+..|++++.
T Consensus         3 ~~l~n~~~~~~~l----------~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~--------~~~d~~~Ai~~l~~~l~   64 (122)
T d1nzna_           3 EAVLNELVSVEDL----------LKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTR--------YNDDIRKGIVLLEELLP   64 (122)
T ss_dssp             HHHHHHHHHHHHH----------HHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSS--------SHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHCCHHHH----------HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC--------CHHHHHHHHHHHHHHHH
T ss_conf             7798873699999----------99999999988329998999999999999851--------26789999999999986


Q ss_pred             HCCCCH-----------------------HHHHHHHCCCCCHHHHHHHHHH
Q ss_conf             499989-----------------------9999995099994889999999
Q 030634          116 EEPTNE-----------------------LYQKSLEVSTKAPELHMELHKH  143 (174)
Q Consensus       116 l~P~~~-----------------------~~~~Al~~~~~~~~~~~~L~~~  143 (174)
                      .+|++.                       .|+++|+++|..+++...+..+
T Consensus        65 ~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I  115 (122)
T d1nzna_          65 KGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLI  115 (122)
T ss_dssp             TSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf             069931999999999999997316999999999997690989999999999

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.09  E-value=1.4e-09  Score=66.36  Aligned_cols=86  Identities=14%  Similarity=-0.016  Sum_probs=76.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCH----------------------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             864669999999999995099999----------------------9999999999993375430011310999999999
Q 030634            9 DRLLLSEHNRKTAEANYAKDPLDA----------------------DNLTRWGEALLELSQFESVSDSKKIINEAISKFE   66 (174)
Q Consensus         9 ~~~~~~~eA~~~~~~al~~~P~~~----------------------~~~~~lg~al~~~~~~~~~~~~~~~~~eAi~~~e   66 (174)
                      -..+++++|...+.+++.+.+++.                      +++.+++.++...|++          ++|+..++
T Consensus        22 ~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~----------~~Al~~~~   91 (179)
T d2ff4a2          22 AAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRA----------SAVIAELE   91 (179)
T ss_dssp             HHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCH----------HHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC----------HHHHHHHH
T ss_conf             98879999999999998638613112576318999999999999999999999999887990----------57899999


Q ss_pred             HHHHHCCCCHHHHHHHHHHHHHCCCCCCCHHHHHCCHHHHHHHHHHHHH
Q ss_conf             9997399999999999999985897765626642599999999999998
Q 030634           67 EALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVD  115 (174)
Q Consensus        67 ~Al~ldP~~~~a~~nLG~a~~~~g~~~~~~~~~~~~~~eA~~~~~kAl~  115 (174)
                      ++++++|.+..+|.+++.++..+|           ++.+|+..|+++.+
T Consensus        92 ~al~~~P~~e~~~~~l~~al~~~G-----------r~~eAl~~y~~~~~  129 (179)
T d2ff4a2          92 ALTFEHPYREPLWTQLITAYYLSD-----------RQSDALGAYRRVKT  129 (179)
T ss_dssp             HHHHHSTTCHHHHHHHHHHHHTTT-----------CHHHHHHHHHHHHH
T ss_pred             HHHHHCCCCHHHHHHHHHHHHHHC-----------CHHHHHHHHHHHHH
T ss_conf             999849851999999999999855-----------79999999999999

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.08  E-value=2.3e-09  Score=65.24  Aligned_cols=117  Identities=9%  Similarity=0.075  Sum_probs=73.4

Q ss_pred             HHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHCC
Q ss_conf             699999999999950-9999999999999999933754300113109999999999997399999-99999999998589
Q 030634           13 LSEHNRKTAEANYAK-DPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKH-YTLWSLGNAHTSCG   90 (174)
Q Consensus        13 ~~~eA~~~~~~al~~-~P~~~~~~~~lg~al~~~~~~~~~~~~~~~~~eAi~~~e~Al~ldP~~~-~a~~nLG~a~~~~g   90 (174)
                      ..++++..+++++.. .|.+...|..++..+...+.+          ++|...|+++++..|.+. .+|..++......|
T Consensus        79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~----------~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~  148 (308)
T d2onda1          79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKY----------EKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAE  148 (308)
T ss_dssp             HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
T ss_conf             4599999999999874998799999999999861338----------999999999998715786999999999999827


Q ss_pred             CCCCCHHHHHCCHHHHHHHHHHHHHHCCCCH----------------------HHHHHHHCCCCCHHHHHHHHHHHHHCC
Q ss_conf             7765626642599999999999998499989----------------------999999509999488999999987121
Q 030634           91 FLTADLSEAKGDFDKASECFQRAVDEEPTNE----------------------LYQKSLEVSTKAPELHMELHKHGINQQ  148 (174)
Q Consensus        91 ~~~~~~~~~~~~~~eA~~~~~kAl~l~P~~~----------------------~~~~Al~~~~~~~~~~~~L~~~~~~~~  148 (174)
                                 ++++|...|+++++..|.+.                      .|++++..+|..+.++..++.....+|
T Consensus       149 -----------~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g  217 (308)
T d2onda1         149 -----------GIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLN  217 (308)
T ss_dssp             -----------CHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             -----------CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             -----------868899999999980888679999999999876557789999999999861003889999999999869


Q ss_pred             CC
Q ss_conf             25
Q 030634          149 TL  150 (174)
Q Consensus       149 ~~  150 (174)
                      ..
T Consensus       218 ~~  219 (308)
T d2onda1         218 ED  219 (308)
T ss_dssp             CH
T ss_pred             CH
T ss_conf             86

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.07  E-value=6e-10  Score=68.35  Aligned_cols=93  Identities=16%  Similarity=0.247  Sum_probs=68.2

Q ss_pred             HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCC---------------CHHHHHHHHHHHHHCCCCCCCH
Q ss_conf             9999999999999337543001131099999999999973999---------------9999999999998589776562
Q 030634           32 ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPA---------------KHYTLWSLGNAHTSCGFLTADL   96 (174)
Q Consensus        32 ~~~~~~lg~al~~~~~~~~~~~~~~~~~eAi~~~e~Al~ldP~---------------~~~a~~nLG~a~~~~g~~~~~~   96 (174)
                      ++.+...|..++..|++          .+|+..|++|+...|.               ...++.|+|.+|..+|      
T Consensus        15 a~~~~e~G~~~~~~~~~----------~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~------   78 (168)
T d1kt1a1          15 AAIVKEKGTVYFKGGKY----------VQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLR------   78 (168)
T ss_dssp             HHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTT------
T ss_pred             HHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHHHHHHHCCCHHHHHHCCHHHHHHHHHHHHHHHHHH------
T ss_conf             99999999999995999----------99999999999999875001245553106467999984999987762------


Q ss_pred             HHHHCCHHHHHHHHHHHHHHCCCCH---------------------HHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf             6642599999999999998499989---------------------999999509999488999999987
Q 030634           97 SEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELHKHGI  145 (174)
Q Consensus        97 ~~~~~~~~eA~~~~~kAl~l~P~~~---------------------~~~~Al~~~~~~~~~~~~L~~~~~  145 (174)
                           ++++|+.++.++++++|++.                     .|.+++.++|..++.+..++.+..
T Consensus        79 -----~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~  143 (168)
T d1kt1a1          79 -----EYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQK  143 (168)
T ss_dssp             -----CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH
T ss_pred             -----HCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf             -----20110002232220131048899988999988278999999999999859898999999999999

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.97  E-value=5e-10  Score=68.73  Aligned_cols=89  Identities=12%  Similarity=0.073  Sum_probs=55.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHC------CCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC------
Q ss_conf             886466999999999999509------99999999999999993375430011310999999999999739999------
Q 030634            8 FDRLLLSEHNRKTAEANYAKD------PLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAK------   75 (174)
Q Consensus         8 ~~~~~~~~eA~~~~~~al~~~------P~~~~~~~~lg~al~~~~~~~~~~~~~~~~~eAi~~~e~Al~ldP~~------   75 (174)
                      |..++.|++|++.+.+++++.      +..+..+.++|.++..++++          ++|+..+++++++.++.      
T Consensus        47 y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~----------~~A~~~~~~a~~~~~~~~~~~~~  116 (290)
T d1qqea_          47 YRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNS----------VNAVDSLENAIQIFTHRGQFRRG  116 (290)
T ss_dssp             HHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCC----------HHHHHHHHHHHHHHHHCCCCHHH
T ss_conf             99886999999999999999987599889999999999999980885----------88899999766776532532058


Q ss_pred             HHHHHHHHHHHHH-CCCCCCCHHHHHCCHHHHHHHHHHHHHHC
Q ss_conf             9999999999985-89776562664259999999999999849
Q 030634           76 HYTLWSLGNAHTS-CGFLTADLSEAKGDFDKASECFQRAVDEE  117 (174)
Q Consensus        76 ~~a~~nLG~a~~~-~g~~~~~~~~~~~~~~eA~~~~~kAl~l~  117 (174)
                      ..++.++|.++.. .|           ++++|+.+|++|+++.
T Consensus       117 ~~~~~~l~~~~~~~~~-----------~~~~A~~~~~~A~~l~  148 (290)
T d1qqea_         117 ANFKFELGEILENDLH-----------DYAKAIDCYELAGEWY  148 (290)
T ss_dssp             HHHHHHHHHHHHHTTC-----------CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHH
T ss_conf             9999998886764787-----------8999988999999998

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=1.2e-09  Score=66.73  Aligned_cols=72  Identities=13%  Similarity=-0.022  Sum_probs=63.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCC-------HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
Q ss_conf             886466999999999999509999-------9999999999999337543001131099999999999973999999999
Q 030634            8 FDRLLLSEHNRKTAEANYAKDPLD-------ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLW   80 (174)
Q Consensus         8 ~~~~~~~~eA~~~~~~al~~~P~~-------~~~~~~lg~al~~~~~~~~~~~~~~~~~eAi~~~e~Al~ldP~~~~a~~   80 (174)
                      +-+++.|.+|+.++++++++.|.+       ++++.++|.++..+|++          ++|+..++++++++|+++.++.
T Consensus        15 ~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~----------~~A~~~y~~aL~l~P~~~~a~~   84 (95)
T d1tjca_          15 AYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDL----------DKALLLTKKLLELDPEHQRANG   84 (95)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHHCCCCHHHHH
T ss_conf             999779999999999999988653014764789999872688865773----------9888788779886929799999


Q ss_pred             HHHHHHHHC
Q ss_conf             999999858
Q 030634           81 SLGNAHTSC   89 (174)
Q Consensus        81 nLG~a~~~~   89 (174)
                      |++.....+
T Consensus        85 Nl~~~~~~l   93 (95)
T d1tjca_          85 NLKYFEYIM   93 (95)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
T ss_conf             999999986

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.93  E-value=8.2e-09  Score=62.34  Aligned_cols=76  Identities=9%  Similarity=0.110  Sum_probs=66.9

Q ss_pred             CCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHCCCCCCCHHHHHCCHHHHHH
Q ss_conf             99999999999999933754300113109999999999997399999-99999999998589776562664259999999
Q 030634           30 LDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKH-YTLWSLGNAHTSCGFLTADLSEAKGDFDKASE  108 (174)
Q Consensus        30 ~~~~~~~~lg~al~~~~~~~~~~~~~~~~~eAi~~~e~Al~ldP~~~-~a~~nLG~a~~~~g~~~~~~~~~~~~~~eA~~  108 (174)
                      ..+++.++.|-+|......       ..++++|.+|+++++.+|.+. +++|+||.+|+.+|           +|++|..
T Consensus        33 ~s~qt~F~YAw~Lv~S~~~-------~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklg-----------dy~~A~~   94 (124)
T d2pqrb1          33 ATIQSRFNYAWGLIKSTDV-------NDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLG-----------EYSMAKR   94 (124)
T ss_dssp             SCHHHHHHHHHHHHHSSCH-------HHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHT-----------CHHHHHH
T ss_pred             CCCCHHHHHHHHHHCCCCH-------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH-----------HHHHHHH
T ss_conf             8810199999999827968-------899999999999985495059999999999999873-----------2999999


Q ss_pred             HHHHHHHHCCCCHHH
Q ss_conf             999999849998999
Q 030634          109 CFQRAVDEEPTNELY  123 (174)
Q Consensus       109 ~~~kAl~l~P~~~~~  123 (174)
                      +++++|+++|+|...
T Consensus        95 ~~~~~L~ieP~n~qA  109 (124)
T d2pqrb1          95 YVDTLFEHERNNKQV  109 (124)
T ss_dssp             HHHHHHHHCTTCHHH
T ss_pred             HHHHHHCCCCCCHHH
T ss_conf             999998239984999

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.86  E-value=6.3e-08  Score=57.66  Aligned_cols=121  Identities=12%  Similarity=0.115  Sum_probs=84.8

Q ss_pred             HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC----CCCHHHHHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHH
Q ss_conf             699999999999950999999999999999993375----43001131099999999999973-9999999999999998
Q 030634           13 LSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQF----ESVSDSKKIINEAISKFEEALVI-DPAKHYTLWSLGNAHT   87 (174)
Q Consensus        13 ~~~eA~~~~~~al~~~P~~~~~~~~lg~al~~~~~~----~~~~~~~~~~~eAi~~~e~Al~l-dP~~~~a~~nLG~a~~   87 (174)
                      ....++..|++++...|.++++|+..+.-+...++.    +........+++|...|++|++. .|++...|+.++....
T Consensus        31 ~~~Rv~~vyerAl~~~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~  110 (308)
T d2onda1          31 ITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE  110 (308)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf             69999999999998777999999999999987073688777876310245999999999998749987999999999998


Q ss_pred             HCCCCCCCHHHHHCCHHHHHHHHHHHHHHCCCCH----------------------HHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf             5897765626642599999999999998499989----------------------99999950999948899999998
Q 030634           88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE----------------------LYQKSLEVSTKAPELHMELHKHG  144 (174)
Q Consensus        88 ~~g~~~~~~~~~~~~~~eA~~~~~kAl~l~P~~~----------------------~~~~Al~~~~~~~~~~~~L~~~~  144 (174)
                      ..|           ++++|...|+++++..|.+.                      .|.+++...|..+..+...+...
T Consensus       111 ~~~-----------~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e  178 (308)
T d2onda1         111 SRM-----------KYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALME  178 (308)
T ss_dssp             HTT-----------CHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHH
T ss_pred             HCC-----------CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf             613-----------38999999999998715786999999999999827868899999999980888679999999999

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=98.83  E-value=3.9e-08  Score=58.77  Aligned_cols=113  Identities=12%  Similarity=0.028  Sum_probs=79.6

Q ss_pred             HHHHHHH--HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCH------------HHHHHHHHHHHHCCCCCCCHH
Q ss_conf             9999999--99999933754300113109999999999997399999------------999999999985897765626
Q 030634           32 ADNLTRW--GEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKH------------YTLWSLGNAHTSCGFLTADLS   97 (174)
Q Consensus        32 ~~~~~~l--g~al~~~~~~~~~~~~~~~~~eAi~~~e~Al~ldP~~~------------~a~~nLG~a~~~~g~~~~~~~   97 (174)
                      ++++..+  |..++..|+|          ++|+..|++|++++|+.+            .+|.|+|.+|..+|       
T Consensus         7 a~a~~~l~~g~~~~~~g~y----------~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg-------   69 (156)
T d2hr2a1           7 VGAYLALSDAQRQLVAGEY----------DEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLR-------   69 (156)
T ss_dssp             HHHHHHHHHHHHHHHHTCH----------HHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTT-------
T ss_pred             HHHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHHCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC-------
T ss_conf             9999999999999985999----------99999999999868442010200121027999999999999828-------


Q ss_pred             HHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCC----CHHHHHHHHHHHHHCCCC-----------------CCC-CC
Q ss_conf             64259999999999999849998999999950999----948899999998712125-----------------899-86
Q 030634           98 EAKGDFDKASECFQRAVDEEPTNELYQKSLEVSTK----APELHMELHKHGINQQTL-----------------GGG-SS  155 (174)
Q Consensus        98 ~~~~~~~eA~~~~~kAl~l~P~~~~~~~Al~~~~~----~~~~~~~L~~~~~~~~~~-----------------~~~-~~  155 (174)
                          ++++|+..+++++++.|...      ...+.    ...++.++|.++...|+.                 .++ +.
T Consensus        70 ----~~~~A~~~~~~al~~~~~~~------~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~~~~~~  139 (156)
T d2hr2a1          70 ----SFDEALHSADKALHYFNRRG------ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPG  139 (156)
T ss_dssp             ----CHHHHHHHHHHHHHHHHHHC------CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTT
T ss_pred             ----CCCHHHHHHHHHHHCCCCCC------CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_conf             ----63001576643553043100------24554431127877526999998888888899999999866874230799


Q ss_pred             HHHHHHHHHHHHHHHC
Q ss_conf             0467899999984200
Q 030634          156 ASSAQVNFCICVHQMK  171 (174)
Q Consensus       156 ~~~~~~~~~~~~~~~~  171 (174)
                      ....+......+.+||
T Consensus       140 ~~~~~~~~~~~l~~lg  155 (156)
T d2hr2a1         140 KERMMEVAIDRIAQLG  155 (156)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCC
T ss_conf             9999999999998719

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.80  E-value=1.3e-08  Score=61.24  Aligned_cols=94  Identities=17%  Similarity=0.105  Sum_probs=74.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHHHHHHHHHCCC-----
Q ss_conf             6886466999999999999509999------9999999999999-337543001131099999999999973999-----
Q 030634            7 DFDRLLLSEHNRKTAEANYAKDPLD------ADNLTRWGEALLE-LSQFESVSDSKKIINEAISKFEEALVIDPA-----   74 (174)
Q Consensus         7 ~~~~~~~~~eA~~~~~~al~~~P~~------~~~~~~lg~al~~-~~~~~~~~~~~~~~~eAi~~~e~Al~ldP~-----   74 (174)
                      -|.+++.+++|+..+++++++.+..      ..++.++|.++.. .+++          ++|+..+++|+++.+.     
T Consensus        86 ~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----------~~A~~~~~~A~~l~~~~~~~~  155 (290)
T d1qqea_          86 CFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDY----------AKAIDCYELAGEWYAQDQSVA  155 (290)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCH----------HHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHCCCHH
T ss_conf             9998088588899999766776532532058999999888676478789----------999889999999987337603


Q ss_pred             -CHHHHHHHHHHHHHCCCCCCCHHHHHCCHHHHHHHHHHHHHHCCCCH
Q ss_conf             -99999999999985897765626642599999999999998499989
Q 030634           75 -KHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (174)
Q Consensus        75 -~~~a~~nLG~a~~~~g~~~~~~~~~~~~~~eA~~~~~kAl~l~P~~~  121 (174)
                       ...++.++|.++..+|           +|++|+.+|++++.+.|.+.
T Consensus       156 ~~~~~~~~la~~~~~~g-----------~y~~A~~~~~~~~~~~~~~~  192 (290)
T d1qqea_         156 LSNKCFIKCADLKALDG-----------QYIEASDIYSKLIKSSMGNR  192 (290)
T ss_dssp             HHHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHTTSSCT
T ss_pred             HHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHHHHHCCCCH
T ss_conf             33468899999999817-----------39999999999998681332

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.77  E-value=9.9e-08  Score=56.64  Aligned_cols=73  Identities=10%  Similarity=0.050  Sum_probs=55.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCC-----HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC------H
Q ss_conf             886466999999999999509999-----99999999999993375430011310999999999999739999------9
Q 030634            8 FDRLLLSEHNRKTAEANYAKDPLD-----ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAK------H   76 (174)
Q Consensus         8 ~~~~~~~~eA~~~~~~al~~~P~~-----~~~~~~lg~al~~~~~~~~~~~~~~~~~eAi~~~e~Al~ldP~~------~   76 (174)
                      +-..|.+++|+..++++++..|.+     ..++..+|.++...|++          ++|+..|++++++.|..      .
T Consensus        22 ~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~----------~~A~~~~~~a~~~~~~~~~~~~~~   91 (366)
T d1hz4a_          22 AINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGEL----------TRSLALMQQTEQMARQHDVWHYAL   91 (366)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCH----------HHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHHHHHHCCHHHHH
T ss_conf             9988899999999999985486899679999999999999987999----------999999999999987501148999


Q ss_pred             HHHHHHHHHHHHCC
Q ss_conf             99999999998589
Q 030634           77 YTLWSLGNAHTSCG   90 (174)
Q Consensus        77 ~a~~nLG~a~~~~g   90 (174)
                      .++.+++.++...|
T Consensus        92 ~~~~~~~~~~~~~~  105 (366)
T d1hz4a_          92 WSLIQQSEILFAQG  105 (366)
T ss_dssp             HHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHH
T ss_conf             99988878878888

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.76  E-value=5.1e-08  Score=58.16  Aligned_cols=60  Identities=18%  Similarity=0.159  Sum_probs=54.2

Q ss_pred             HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCHHHHHCCHHHHHHHHHHHHHHCCCCHHHHH
Q ss_conf             31099999999999973999999999999999858977656266425999999999999984999899999
Q 030634           55 KKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQK  125 (174)
Q Consensus        55 ~~~~~eAi~~~e~Al~ldP~~~~a~~nLG~a~~~~g~~~~~~~~~~~~~~eA~~~~~kAl~l~P~~~~~~~  125 (174)
                      .+.+++|+..++++++.+|+++.++.++|.++...|           ++++|+..++++++++|++.....
T Consensus         9 ~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G-----------~~e~A~~~l~~a~~l~P~~~~~~~   68 (264)
T d1zbpa1           9 EGQLQQALELLIEAIKASPKDASLRSSFIELLCIDG-----------DFERADEQLMQSIKLFPEYLPGAS   68 (264)
T ss_dssp             TTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHT-----------CHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf             889999999999999978999999999999999879-----------999999999999986997389999

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.62  E-value=2.9e-08  Score=59.48  Aligned_cols=91  Identities=9%  Similarity=-0.002  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCC-------
Q ss_conf             886466999999999999509999------9999999999999337543001131099999999999973999-------
Q 030634            8 FDRLLLSEHNRKTAEANYAKDPLD------ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPA-------   74 (174)
Q Consensus         8 ~~~~~~~~eA~~~~~~al~~~P~~------~~~~~~lg~al~~~~~~~~~~~~~~~~~eAi~~~e~Al~ldP~-------   74 (174)
                      |..++.+++|+..+++++...+..      ...+.+++.++...+++          ..++..+.+++.+.+.       
T Consensus        61 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~a~~~~~~al~~~~~~~~~~~~  130 (366)
T d1hz4a_          61 LHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFL----------QTAWETQEKAFQLINEQHLEQLP  130 (366)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHHHTTCTTST
T ss_pred             HHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHCCCCHHH
T ss_conf             99879999999999999999875011489999998887887888889----------99998899999986750341256


Q ss_pred             -CHHHHHHHHHHHHHCCCCCCCHHHHHCCHHHHHHHHHHHHHHCCC
Q ss_conf             -999999999999858977656266425999999999999984999
Q 030634           75 -KHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPT  119 (174)
Q Consensus        75 -~~~a~~nLG~a~~~~g~~~~~~~~~~~~~~eA~~~~~kAl~l~P~  119 (174)
                       ...++..+|.++...|           +++++..++.+++...+.
T Consensus       131 ~~~~~~~~la~~~~~~~-----------~~~~a~~~~~~~~~~~~~  165 (366)
T d1hz4a_         131 MHEFLVRIRAQLLWAWA-----------RLDEAEASARSGIEVLSS  165 (366)
T ss_dssp             HHHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHH
T ss_conf             78889988878999814-----------566668999998887663

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.44  E-value=9.2e-06  Score=46.26  Aligned_cols=146  Identities=13%  Similarity=-0.031  Sum_probs=90.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf             88646699999999999950999999999999999993375430011310999999999999739999999999999998
Q 030634            8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT   87 (174)
Q Consensus         8 ~~~~~~~~eA~~~~~~al~~~P~~~~~~~~lg~al~~~~~~~~~~~~~~~~~eAi~~~e~Al~ldP~~~~a~~nLG~a~~   87 (174)
                      +.+.+.+++|+++++++.+.  +++.+.+++|.++......      ...+..|+..++.+...  .++.+..++|.++.
T Consensus        12 ~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~------~~d~~~a~~~~~~a~~~--~~~~a~~~l~~~~~   81 (265)
T d1ouva_          12 SYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGV------EKNLKKAASFYAKACDL--NYSNGCHLLGNLYY   81 (265)
T ss_dssp             HHHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSS------CCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHCCCCC------CHHHHHHHHHHCCCCCC--CCCCHHHCCCCCCC
T ss_conf             99877999999999999978--9999999999999809996------05699998750122211--11112313501224


Q ss_pred             HCCCCCCCHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHH---------------------HHCCCCCHHHHHHHHHHHHH
Q ss_conf             589776562664259999999999999849998999999---------------------95099994889999999871
Q 030634           88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKS---------------------LEVSTKAPELHMELHKHGIN  146 (174)
Q Consensus        88 ~~g~~~~~~~~~~~~~~eA~~~~~kAl~l~P~~~~~~~A---------------------l~~~~~~~~~~~~L~~~~~~  146 (174)
                      ...       ....+.+.|+..++++.+..+....++.+                     ....+..+....+|+..+..
T Consensus        82 ~~~-------~~~~~~~~a~~~~~~a~~~g~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~L~~~~~~  154 (265)
T d1ouva_          82 SGQ-------GVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDA  154 (265)
T ss_dssp             HTS-------SSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CCC-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCC
T ss_conf             321-------1212367798887655432146688763433237873310157788875552001110104455556406


Q ss_pred             CCCC-------------CCCCCHHHHHHHHHHHHHHH
Q ss_conf             2125-------------89986046789999998420
Q 030634          147 QQTL-------------GGGSSASSAQVNFCICVHQM  170 (174)
Q Consensus       147 ~~~~-------------~~~~~~~~~~~~~~~~~~~~  170 (174)
                      ....             +.++..+.++++++.+...+
T Consensus       155 ~~~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g  191 (265)
T d1ouva_         155 GRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHG  191 (265)
T ss_dssp             TSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             CCCCCCCCCCCHHHHHCCCCCCCCCCCCCHHHHCCCC
T ss_conf             8874334220001221132322223322113121267

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.36  E-value=2.4e-06  Score=49.32  Aligned_cols=70  Identities=16%  Similarity=0.083  Sum_probs=62.3

Q ss_pred             CHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCH----------------------HHHHHHHHHHHH
Q ss_conf             9999999999999933754300113109999999999997399999----------------------999999999985
Q 030634           31 DADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKH----------------------YTLWSLGNAHTS   88 (174)
Q Consensus        31 ~~~~~~~lg~al~~~~~~~~~~~~~~~~~eAi~~~e~Al~ldP~~~----------------------~a~~nLG~a~~~   88 (174)
                      --+.+...|..+...|++          ++|+..|.+|+.+.|...                      .++.+++.++..
T Consensus        10 ~f~~~~~~g~~~~~~g~~----------e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~   79 (179)
T d2ff4a2          10 RFVAEKTAGVHAAAAGRF----------EQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIA   79 (179)
T ss_dssp             HHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999999999988799----------9999999999863861311257631899999999999999999999999988


Q ss_pred             CCCCCCCHHHHHCCHHHHHHHHHHHHHHCCCCH
Q ss_conf             897765626642599999999999998499989
Q 030634           89 CGFLTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (174)
Q Consensus        89 ~g~~~~~~~~~~~~~~eA~~~~~kAl~l~P~~~  121 (174)
                      +|           ++++|+.+++++++++|.+.
T Consensus        80 ~g-----------~~~~Al~~~~~al~~~P~~e  101 (179)
T d2ff4a2          80 CG-----------RASAVIAELEALTFEHPYRE  101 (179)
T ss_dssp             TT-----------CHHHHHHHHHHHHHHSTTCH
T ss_pred             CC-----------CCHHHHHHHHHHHHHCCCCH
T ss_conf             79-----------90578999999998498519

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.06  E-value=4.2e-05  Score=42.80  Aligned_cols=27  Identities=22%  Similarity=0.226  Sum_probs=10.3

Q ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf             99999999999739999999999999998
Q 030634           59 NEAISKFEEALVIDPAKHYTLWSLGNAHT   87 (174)
Q Consensus        59 ~eAi~~~e~Al~ldP~~~~a~~nLG~a~~   87 (174)
                      .+|++.|+++.+.  +++.++++||.+|.
T Consensus        19 ~~A~~~~~kAa~~--g~~~A~~~Lg~~y~   45 (265)
T d1ouva_          19 TQAKKYFEKACDL--KENSGCFNLGVLYY   45 (265)
T ss_dssp             HHHHHHHHHHHHT--TCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHC--CCHHHHHHHHHHHH
T ss_conf             9999999999978--99999999999998

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.01  E-value=1.7e-05  Score=44.81  Aligned_cols=67  Identities=7%  Similarity=-0.062  Sum_probs=58.2

Q ss_pred             HHHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf             466999999999999509999-99999999999993375430011310999999999999739999999999999998
Q 030634           11 LLLSEHNRKTAEANYAKDPLD-ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT   87 (174)
Q Consensus        11 ~~~~~eA~~~~~~al~~~P~~-~~~~~~lg~al~~~~~~~~~~~~~~~~~eAi~~~e~Al~ldP~~~~a~~nLG~a~~   87 (174)
                      .....+++..++.++..+|.+ .++++++|.++..+|++          ++|...++++++++|++..+....-.+-.
T Consensus        51 ~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy----------~~A~~~~~~~L~ieP~n~qA~~L~~~Ie~  118 (124)
T d2pqrb1          51 VNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEY----------SMAKRYVDTLFEHERNNKQVGALKSMVED  118 (124)
T ss_dssp             HHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHCCCCCCHHHHHHHHHHHH
T ss_conf             889999999999998549505999999999999987329----------99999999998239984999999999999

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.90  E-value=0.00014  Score=39.99  Aligned_cols=114  Identities=11%  Similarity=-0.037  Sum_probs=67.2

Q ss_pred             HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCC
Q ss_conf             69999999999995099999999999999999337543001131099999999999973999999999999999858977
Q 030634           13 LSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFL   92 (174)
Q Consensus        13 ~~~eA~~~~~~al~~~P~~~~~~~~lg~al~~~~~~~~~~~~~~~~~eAi~~~e~Al~ldP~~~~a~~nLG~a~~~~g~~   92 (174)
                      .+++|+++++++.+.+  ++.+.+++|...  .          ...++|+..++++.+.  +++.+.++||.+|..--  
T Consensus         8 d~~~A~~~~~kaa~~g--~~~a~~~l~~~~--~----------~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~--   69 (133)
T d1klxa_           8 DLKKAIQYYVKACELN--EMFGCLSLVSNS--Q----------INKQKLFQYLSKACEL--NSGNGCRFLGDFYENGK--   69 (133)
T ss_dssp             HHHHHHHHHHHHHHTT--CTTHHHHHHTCT--T----------SCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCS--
T ss_pred             CHHHHHHHHHHHHHCC--CHHHHHHHCCCC--C----------CCHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHCC--
T ss_conf             9999999999999879--915456541011--2----------3899999987654113--31255556787533013--


Q ss_pred             CCCHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
Q ss_conf             65626642599999999999998499989999999509999488999999987121258998604678999999
Q 030634           93 TADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLEVSTKAPELHMELHKHGINQQTLGGGSSASSAQVNFCIC  166 (174)
Q Consensus        93 ~~~~~~~~~~~~eA~~~~~kAl~l~P~~~~~~~Al~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (174)
                           ....++++|+.+|+++.+...               +....+|+.++.. | .+...|...+..-+-.+
T Consensus        70 -----~~~~d~~~A~~~~~~aa~~g~---------------~~a~~~Lg~~y~~-G-~gv~~d~~~A~~~~~~A  121 (133)
T d1klxa_          70 -----YVKKDLRKAAQYYSKACGLND---------------QDGCLILGYKQYA-G-KGVVKNEKQAVKTFEKA  121 (133)
T ss_dssp             -----SSCCCHHHHHHHHHHHHHTTC---------------HHHHHHHHHHHHH-T-SSSCCCHHHHHHHHHHH
T ss_pred             -----CCCHHHHHHHHHHHHHHCCCC---------------CHHHHHHHHHHHC-C-CCCCCCHHHHHHHHHHH
T ss_conf             -----531035788888750002574---------------0677899999982-9-84677899999999999

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.51  E-value=0.0013  Score=34.89  Aligned_cols=91  Identities=12%  Similarity=0.083  Sum_probs=70.6

Q ss_pred             HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-CCC
Q ss_conf             6999999999999509999999999999999933754300113109999999999997399999999999999985-897
Q 030634           13 LSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTS-CGF   91 (174)
Q Consensus        13 ~~~eA~~~~~~al~~~P~~~~~~~~lg~al~~~~~~~~~~~~~~~~~eAi~~~e~Al~ldP~~~~a~~nLG~a~~~-~g~   91 (174)
                      .+++++++++++.+.  +++.+.+.+|..+..- ..     ......+|+..|+++.+.  .++.+.++||.+|.. .| 
T Consensus        38 ~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g-~~-----~~~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~G~g-  106 (133)
T d1klxa_          38 NKQKLFQYLSKACEL--NSGNGCRFLGDFYENG-KY-----VKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKG-  106 (133)
T ss_dssp             CHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHC-SS-----SCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSS-
T ss_pred             CHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHC-CC-----CCHHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHCCCC-
T ss_conf             899999987654113--3125555678753301-35-----310357888887500025--740677899999982984-


Q ss_pred             CCCCHHHHHCCHHHHHHHHHHHHHHCCCCH
Q ss_conf             765626642599999999999998499989
Q 030634           92 LTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (174)
Q Consensus        92 ~~~~~~~~~~~~~eA~~~~~kAl~l~P~~~  121 (174)
                             ...++++|+.+|++|.++.....
T Consensus       107 -------v~~d~~~A~~~~~~Aa~~G~~~A  129 (133)
T d1klxa_         107 -------VVKNEKQAVKTFEKACRLGSEDA  129 (133)
T ss_dssp             -------SCCCHHHHHHHHHHHHHTTCHHH
T ss_pred             -------CCCCHHHHHHHHHHHHHCCCHHH
T ss_conf             -------67789999999999998788998