Citrus Sinensis ID: 030656

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170----
Protein Sequence
MFWQIRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRLVSGNLNAAARDELLESGMADALTASADQRSRLMMSTERVNQSTDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSRRMSRNKWIIGTVVAVLVIAIILILYFKLAK
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHcccccccccccHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MFWQIRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRLVSGNLNAAARDELLESGMADALTASADQRSRLMMSTERVNQSTDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNtlhgvddnvsKSKKVLTAMSRRMSRNKWIIGTVVAVLVIAIILILYFKLAK
Flexible Loop (DISEMBL)
mfwqirkmdlearslqpnvKAVLLAKLREYKSDLNNLKSEVKRLVSGNLNAAARDELLESGMADALTAsadqrsrlmmstervnqstdrikdsrrTMLETEELGVSILQDLSSQRQSLLHAHntlhgvddnvskSKKVLTAMSrrmsrnkwiigTVVAVLVIAIILILYFKLAK
Low Complexity Region (SEG)
MFWQIRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRLVSGNLNAAARDELLESGMADALTASADQRSRLMMSTERVNQSTDRIKDSRRTMLETEELGVsilqdlssqrqsllHAHNTLHGVDDNVSKSKKVLTAMSRRMSRNKWIIGTvvavlviaiililYFKLAK
Disordered region (IsUnstruct)
*****************NVKAVLLAKLREYKS*****************************************************************************************************************MSRNKWIIGTVVAVLVIAIILILYFKL**
Disordered Region (DISOPRED)
MFWQIRKMDL*****************REYKSDLNNLKS**********************************************************LETEELGVSILQD******************DDNVSKSKKVLTAMSRRMSRNKWIIGTVVAVLVIAIILILYFKLAK
Disordered Region (DISEMBL)
MFWQIRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRLVSGNLNAAARDELLESGMADALTASADQRSRLM*************KDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSRRMSRNKWIIGTVVAVLVIAIILILYFKLAK
Disordered Region (DISPRO)
MFWQIRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRLVSG***********E***A*****SADQRSRLMMSTERVNQSTDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSRRMSRNKWIIGTVVAVLVIAIILILYFKLAK
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFWQIRKMDLEARSLQPNVxxxxxxxxxxxxxxxxxxxxxxxxxxxxNLNAAARDELLESGMADALTASADQRSRLMMSTERVNQSTDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSRRMSRNKWIIGTVVAVLVIAIILILYFKLAK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	174	2.2.26 [Sep-21-2011]
Q9LVP9	221	Vesicle transport v-SNARE	no	no	0.977	0.769	0.770	3e-74
Q9SEL6	221	Vesicle transport v-SNARE	no	no	0.977	0.769	0.735	2e-65
Q9SEL5	222	Vesicle transport v-SNARE	no	no	0.971	0.761	0.698	1e-64
O89116	217	Vesicle transport through	yes	no	0.925	0.741	0.307	2e-18
Q96AJ9	217	Vesicle transport through	yes	no	0.925	0.741	0.295	2e-17
Q9JI51	224	Vesicle transport through	yes	no	0.925	0.718	0.289	1e-15
Q04338	217	t-SNARE VTI1 OS=Saccharom	yes	no	0.844	0.677	0.357	3e-14
O88384	232	Vesicle transport through	no	no	0.931	0.698	0.301	1e-13
P58200	232	Vesicle transport through	no	no	0.925	0.693	0.322	3e-13
Q2KIU0	232	Vesicle transport through	yes	no	0.942	0.706	0.3	1e-12

>sp|Q9LVP9|VTI13_ARATH Vesicle transport v-SNARE 13 OS=Arabidopsis thaliana GN=VTI13 PE=2 SV=1

 Score =  276 bits (707), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 131/170 (77%), Positives = 150/170 (88%)

Query: 5   IRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRLVSGNLNAAARDELLESGMAD 64
           ++KMDLEAR+L PNVK+ LL KLREYKSDLNN K+EVKR+ SGNLNA ARDELLE+GMAD
Sbjct: 52  VKKMDLEARNLPPNVKSSLLVKLREYKSDLNNFKTEVKRITSGNLNATARDELLEAGMAD 111

Query: 65  ALTASADQRSRLMMSTERVNQSTDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNT 124
            LTASADQRSRLMMST+ + ++TDRIKDSRRT+LETEELGVSILQDL  QRQSLL AH T
Sbjct: 112 TLTASADQRSRLMMSTDHLGRTTDRIKDSRRTILETEELGVSILQDLHGQRQSLLRAHET 171

Query: 125 LHGVDDNVSKSKKVLTAMSRRMSRNKWIIGTVVAVLVIAIILILYFKLAK 174
           LHGVDDNV KSKK+LT M+RRM+RNKW IG ++ VLV+AII ILYFKL +
Sbjct: 172 LHGVDDNVGKSKKILTTMTRRMNRNKWTIGAIITVLVLAIIFILYFKLTR 221

May function as a v-SNARE responsible for targeting vesicles involved in the secretory pathway.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9SEL6|VTI11_ARATH Vesicle transport v-SNARE 11 OS=Arabidopsis thaliana GN=VTI11 PE=1 SV=2

 Score =  247 bits (631), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 125/170 (73%), Positives = 148/170 (87%)

Query: 5   IRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRLVSGNLNAAARDELLESGMAD 64
           IRKMDLEAR+L PN+K+ LL KLRE+KSDLNN K+EVKR+ SG LNAAARDELLE+GMAD
Sbjct: 52  IRKMDLEARTLPPNLKSSLLVKLREFKSDLNNFKTEVKRITSGQLNAAARDELLEAGMAD 111

Query: 65  ALTASADQRSRLMMSTERVNQSTDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNT 124
             TASADQR+RLMMSTER+ ++TDR+KDSRRTM+ETEE+GVSILQDL  QRQSLL AH T
Sbjct: 112 TKTASADQRARLMMSTERLGRTTDRVKDSRRTMMETEEIGVSILQDLHGQRQSLLRAHET 171

Query: 125 LHGVDDNVSKSKKVLTAMSRRMSRNKWIIGTVVAVLVIAIILILYFKLAK 174
           LHGVDDN+ KSKK+LT M+RRM++NKW IG ++  L+ AI +ILYFKL K
Sbjct: 172 LHGVDDNIGKSKKILTDMTRRMNKNKWTIGAIIIALIAAIFIILYFKLTK 221

May function as a v-SNARE responsible for targeting AtELP-containing vesicles from the trans-Golgi network (TGN) to the prevacuolar compartment (PVC). May be also involved in retrograde traffic to the cis-Golgi.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SEL5|VTI12_ARATH Vesicle transport v-SNARE 12 OS=Arabidopsis thaliana GN=VTI12 PE=1 SV=3

 Score =  245 bits (625), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 118/169 (69%), Positives = 143/169 (84%)

Query: 5   IRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRLVSGNLNAAARDELLESGMAD 64
           IRKMDLEARSLQP+ KAV L+KLREYKSDLN LK E KR+ S +   ++R+EL+ESGMAD
Sbjct: 53  IRKMDLEARSLQPSAKAVCLSKLREYKSDLNQLKKEFKRVSSADAKPSSREELMESGMAD 112

Query: 65  ALTASADQRSRLMMSTERVNQSTDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNT 124
               SADQR RL MS ER++QS+DRI++SRR MLETEE+G+SI+QDLS QRQ+LLHAHN 
Sbjct: 113 LHAVSADQRGRLAMSVERLDQSSDRIRESRRLMLETEEVGISIVQDLSQQRQTLLHAHNK 172

Query: 125 LHGVDDNVSKSKKVLTAMSRRMSRNKWIIGTVVAVLVIAIILILYFKLA 173
           LHGVDD + KSKKVLTAMSRRM+RNKWII +V+  LV+AIILI+ +KL+
Sbjct: 173 LHGVDDAIDKSKKVLTAMSRRMTRNKWIITSVIVALVLAIILIISYKLS 221

May function as a v-SNARE responsible for the docking or fusion of transport vesicles within the trans-Golgi network (TGN). May be also involved in retrograde traffic to the cis-Golgi.

Arabidopsis thaliana (taxid: 3702)

>sp|O89116|VTI1A_MOUSE Vesicle transport through interaction with t-SNAREs homolog 1A OS=Mus musculus GN=Vti1a PE=1 SV=1

 Score = 92.0 bits (227), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 98/166 (59%), Gaps = 5/166 (3%)

Query: 5   IRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRLVSGNLNAAARDELLESGMAD 64
           + +MDLE R + P  + +   ++R YK ++  L+++ KR        A  DE+    + D
Sbjct: 52  LEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLETDFKRS-----RIAYSDEVRNELLGD 106

Query: 65  ALTASADQRSRLMMSTERVNQSTDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNT 124
           A  +S +QR+ L+ +TER+ +S+ R++   +  +ETE++G  +L++LS  R+ +  A + 
Sbjct: 107 AGNSSENQRAHLLDNTERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDREKIQRARDR 166

Query: 125 LHGVDDNVSKSKKVLTAMSRRMSRNKWIIGTVVAVLVIAIILILYF 170
           L   D N+ KS ++LT M RR+ +N+ ++  +  ++VIAI+  + F
Sbjct: 167 LRDADANLGKSSRILTGMLRRIIQNRILLVILGIIVVIAILTAIAF 212

V-SNARE that mediates vesicle transport pathways through interactions with t-SNAREs on the target membrane. These interactions are proposed to mediate aspects of the specificity of vesicle trafficking and to promote fusion of the lipid bilayers. Involved in vesicular transport from the late endosomes to the trans-Golgi network. Along with VAMP7, involved in an non-conventional RAB1-dependent traffic route to the cell surface used by KCNIP1 and KCND2. May be concerned with increased secretion of cytokines associated with cellular senescence.

Mus musculus (taxid: 10090)

>sp|Q96AJ9|VTI1A_HUMAN Vesicle transport through interaction with t-SNAREs homolog 1A OS=Homo sapiens GN=VTI1A PE=1 SV=2

 Score = 88.2 bits (217), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 96/166 (57%), Gaps = 5/166 (3%)

Query: 5   IRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRLVSGNLNAAARDELLESGMAD 64
           + +MDLE R + P  + +   ++R YK ++  L+++ KR        A  DE+    + D
Sbjct: 52  LEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLETDFKRS-----RIAYSDEVRNELLGD 106

Query: 65  ALTASADQRSRLMMSTERVNQSTDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNT 124
              +S +QR+ L+ +TER+ +S+ R++   +  +ETE++G  +L++LS  R+ +  A   
Sbjct: 107 DGNSSENQRAHLLDNTERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDREKIQRARER 166

Query: 125 LHGVDDNVSKSKKVLTAMSRRMSRNKWIIGTVVAVLVIAIILILYF 170
           L   D N+ KS ++LT M RR+ +N+ ++  +  ++VI I++ + F
Sbjct: 167 LRETDANLGKSSRILTGMLRRIIQNRILLVILGIIVVITILMAITF 212

V-SNARE that mediates vesicle transport pathways through interactions with t-SNAREs on the target membrane. These interactions are proposed to mediate aspects of the specificity of vesicle trafficking and to promote fusion of the lipid bilayers. Involved in vesicular transport from the late endosomes to the trans-Golgi network. Along with VAMP7, involved in an non-conventional RAB1-dependent traffic route to the cell surface used by KCNIP1 and KCND2. May be involved in increased cytokine secretion associated with cellular senescence.

Homo sapiens (taxid: 9606)

>sp|Q9JI51|VTI1A_RAT Vesicle transport through interaction with t-SNAREs homolog 1A OS=Rattus norvegicus GN=Vti1a PE=1 SV=1

 Score = 82.4 bits (202), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 96/173 (55%), Gaps = 12/173 (6%)

Query: 5   IRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRLVSGNLNAAARDELLESGMAD 64
           + +MDLE R + P  + +   ++R YK ++  L+++ KR        A  DE+    + D
Sbjct: 52  LEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLETDFKRS-----RIAYSDEVRNELLGD 106

Query: 65  ALTASADQ-------RSRLMMSTERVNQSTDRIKDSRRTMLETEELGVSILQDLSSQRQS 117
           A  +S +Q       R+ L+ +TER+ +S+ R++   +  +ETE++G  +L++LS  R+ 
Sbjct: 107 AGNSSENQLIKLREERAHLLDNTERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDRER 166

Query: 118 LLHAHNTLHGVDDNVSKSKKVLTAMSRRMSRNKWIIGTVVAVLVIAIILILYF 170
           +  A   L   D N+ KS ++LT M RR+ +N+ ++  +  ++VI I+  + F
Sbjct: 167 IQRARERLRETDANLGKSSRILTGMLRRIIQNRILLVILGIIVVITILTAITF 219

V-SNARE that mediates vesicle transport pathways through interactions with t-SNAREs on the target membrane. These interactions are proposed to mediate aspects of the specificity of vesicle trafficking and to promote fusion of the lipid bilayers. Involved in vesicular transport from the late endosomes to the trans-Golgi network. Along with VAMP7, involved in an non-conventional RAB1-dependent traffic route to the cell surface used by KCNIP1 and KCND2 (By similarity). May be concerned with increased secretion of cytokines associated with cellular senescence.

Rattus norvegicus (taxid: 10116)

>sp|Q04338|VTI1_YEAST t-SNARE VTI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=VTI1 PE=1 SV=3

 Score = 77.8 bits (190), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 55/154 (35%), Positives = 87/154 (56%), Gaps = 7/154 (4%)

Query: 1   MFWQIRKMDLEARSL--QPNVKAVLLAKLREYKSDLNNLKSEVKRLVSGNLNAAARDELL 58
           +F  + +MD+E  +     + +A   AKLRE+K     ++S++KR +   +++  RD L 
Sbjct: 48  LFDLLDQMDVEVNNSIGDASERATYKAKLREWK---KTIQSDIKRPLQSLVDSGDRDRLF 104

Query: 59  ESGMADALTASADQRSRLMMSTERVNQSTDRIKDSRRTMLETEELGVSILQDLSSQRQSL 118
             G  +A     DQR +L+ +   + +S DR+KD+ R   ETE +G  I+ DL SQR++L
Sbjct: 105 --GDLNASNIDDDQRQQLLSNHAILQKSGDRLKDASRIANETEGIGSQIMMDLRSQRETL 162

Query: 119 LHAHNTLHGVDDNVSKSKKVLTAMSRRMSRNKWI 152
            +A  TL   D  V KS K L  M+RR+  NK+I
Sbjct: 163 ENARQTLFQADSYVDKSIKTLKTMTRRLVANKFI 196

t-SNARE found in various SNARE complexes involved in multiple transport pathways. The composition of the t-SNARE complexes is specific for a limited number of v-SNAREs and therefore allows only the vesicles carrying the matching v-SNARE to fuse.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|O88384|VTI1B_MOUSE Vesicle transport through interaction with t-SNAREs homolog 1B OS=Mus musculus GN=Vti1b PE=1 SV=1

 Score = 75.9 bits (185), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 53/176 (30%), Positives = 98/176 (55%), Gaps = 14/176 (7%)

Query: 7   KMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRLVSGNLNAA--ARDEL------L 58
           +M+ E R      +  +++KLR Y+ DL  L  EV+   S  L AA   R +L      L
Sbjct: 61  EMEEELRYAPLTFRNPMMSKLRNYRKDLAKLHREVR---STPLTAAPGGRGDLKYGTYTL 117

Query: 59  ESGMADALTASADQRSRLMMSTERVNQSTDRIKDSRRTMLETEELGVSILQDLSSQRQSL 118
           E+   + L +   QR+ L+  TE +N++T  I+ S R   ET+++G  I+++L  QR  L
Sbjct: 118 ENEHLNRLQS---QRALLLQGTESLNRATQSIERSHRIATETDQIGTEIIEELGEQRDQL 174

Query: 119 LHAHNTLHGVDDNVSKSKKVLTAMSRRMSRNKWIIGTVVAVLVIAIILILYFKLAK 174
               + L   ++N+SKS+K+L +MSR++  NK ++  ++ + +  ++ ++Y+K  +
Sbjct: 175 ERTKSRLVNTNENLSKSRKILRSMSRKVITNKLLLSVIILLELAILVGLVYYKFFR 230

V-SNARE that mediates vesicle transport pathways through interactions with t-SNAREs on the target membrane. These interactions are proposed to mediate aspects of the specificity of vesicle trafficking and to promote fusion of the lipid bilayers.

Mus musculus (taxid: 10090)

>sp|P58200|VTI1B_RAT Vesicle transport through interaction with t-SNAREs homolog 1B OS=Rattus norvegicus GN=Vti1b PE=1 SV=2

 Score = 74.7 bits (182), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 57/177 (32%), Positives = 101/177 (57%), Gaps = 16/177 (9%)

Query: 7   KMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRLVSGNLNA--AARDEL------L 58
           +M+ E R      +  +++KLR Y+ DL  L  EV+   S  L A    R +L      L
Sbjct: 61  EMEEELRYAPLTFRNSMMSKLRNYRKDLAKLHREVR---STPLTATPGGRGDLKFGTYTL 117

Query: 59  ESGMADALTASADQRSRLMMSTERVNQSTDRIKDSRRTMLETEELGVSILQDLSSQRQSL 118
           E+   + L +   QR+ L+  TE +N++T  I+ S R   ET+++G  I+++L  QR  L
Sbjct: 118 ENEHLNRLQS---QRALLLQGTESLNRATQSIERSHRIAAETDQIGSEIIEELGEQRDQL 174

Query: 119 LHAHNTLHGVDDNVSKSKKVLTAMSRRMSRNKWIIGTVVAVLVIAIIL-ILYFKLAK 174
               + L   ++N+SKS+K+L +MSR++  NK ++ +V+ VL +AI++ ++Y+K  +
Sbjct: 175 ERTKSRLVNTNENLSKSRKILRSMSRKVITNKLLL-SVIIVLELAILVGLVYYKFFR 230

V-SNARE that mediates vesicle transport pathways through interactions with t-SNAREs on the target membrane. These interactions are proposed to mediate aspects of the specificity of vesicle trafficking and to promote fusion of the lipid bilayers.

Rattus norvegicus (taxid: 10116)

>sp|Q2KIU0|VTI1B_BOVIN Vesicle transport through interaction with t-SNAREs homolog 1B OS=Bos taurus GN=VTI1B PE=2 SV=1

 Score = 72.4 bits (176), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 95/170 (55%), Gaps = 6/170 (3%)

Query: 7   KMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRLVSGNLNAAARDELLESGMA--- 63
           +M+ E R    + +  +++KLR Y+ DL  L  EV R         AR ++     A   
Sbjct: 61  EMEEELRYAPLSFRNPMMSKLRTYRKDLAKLHREV-RSTPLTATPGARGDMKYGTYAVEN 119

Query: 64  DALTASADQRSRLMMSTERVNQSTDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHN 123
           + +     QR+ L+  T+ +N++T  I+ S R   ET+++G  I+++L  QR  L    +
Sbjct: 120 EHMNRLQSQRALLLQGTDSLNRATQSIERSHRIAAETDQIGSEIIEELGEQRDQLERTKS 179

Query: 124 TLHGVDDNVSKSKKVLTAMSRRMSRNKWIIGTVVAVLVIAII-LILYFKL 172
            L    +N+SKS+K+L +MSR+++ NK ++ ++V +L +AI+  ++Y+K 
Sbjct: 180 RLVNTSENLSKSRKILRSMSRKVTTNKLLL-SIVILLELAILGGLVYYKF 228

V-SNARE that mediates vesicle transport pathways through interactions with t-SNAREs on the target membrane. These interactions are proposed to mediate aspects of the specificity of vesicle trafficking and to promote fusion of the lipid bilayers. May be concerned with increased secretion of cytokines associated with cellular senescence.

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	174
358249256	221	uncharacterized protein LOC100815385 [Gl	0.977	0.769	0.835	8e-80
357496517	221	Vesicle transport v-SNARE [Medicago trun	0.977	0.769	0.817	4e-78
224080207	220	predicted protein [Populus trichocarpa]	0.965	0.763	0.839	3e-77
225457347	221	PREDICTED: vesicle transport v-SNARE 13	0.971	0.764	0.828	2e-76
297733941	279	unnamed protein product [Vitis vinifera]	0.971	0.605	0.828	2e-76
255578288	220	vesicle transport V-snare protein vti1a,	0.965	0.763	0.886	5e-76
388511477	221	unknown [Lotus japonicus]	0.977	0.769	0.811	1e-75
357502019	221	Vesicle transport v-SNARE [Medicago trun	0.977	0.769	0.817	2e-75
217075628	213	unknown [Medicago truncatula]	0.977	0.798	0.817	3e-75
388502072	199	unknown [Lotus japonicus]	0.977	0.854	0.811	5e-75

>gi|358249256|ref|NP_001239763.1| uncharacterized protein LOC100815385 [Glycine max] gi|255634551|gb|ACU17638.1| unknown [Glycine max]

 Score =  301 bits (770), Expect = 8e-80,   Method: Compositional matrix adjust.
 Identities = 142/170 (83%), Positives = 162/170 (95%)

Query: 5   IRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRLVSGNLNAAARDELLESGMAD 64
           IRKMDLEARSLQPN+K VLLAKLREYKSDLNNLKSEVK++VSGNLN +ARDELLESGMAD
Sbjct: 52  IRKMDLEARSLQPNIKGVLLAKLREYKSDLNNLKSEVKKIVSGNLNPSARDELLESGMAD 111

Query: 65  ALTASADQRSRLMMSTERVNQSTDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNT 124
           A+TASADQR+RLM+STER+N+++DR+KDSRRTMLETEELGVSILQDL SQRQSLLHAHNT
Sbjct: 112 AMTASADQRTRLMVSTERLNKTSDRVKDSRRTMLETEELGVSILQDLHSQRQSLLHAHNT 171

Query: 125 LHGVDDNVSKSKKVLTAMSRRMSRNKWIIGTVVAVLVIAIILILYFKLAK 174
           LHGVDDN+ KSKK+LT MSRRM++NKW+IG +V VLVIAII+ILYFK +K
Sbjct: 172 LHGVDDNIGKSKKILTNMSRRMNKNKWVIGGIVLVLVIAIIVILYFKFSK 221

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357496517|ref|XP_003618547.1| Vesicle transport v-SNARE [Medicago truncatula] gi|355493562|gb|AES74765.1| Vesicle transport v-SNARE [Medicago truncatula] gi|388504124|gb|AFK40128.1| unknown [Medicago truncatula]

 Score =  295 bits (755), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 139/170 (81%), Positives = 158/170 (92%)

Query: 5   IRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRLVSGNLNAAARDELLESGMAD 64
           IRKMDLEARS+QPN+K VLLAKLREYKSDLNNLKSEVK++VSGNLN +ARDELLESGMAD
Sbjct: 52  IRKMDLEARSMQPNIKGVLLAKLREYKSDLNNLKSEVKKIVSGNLNPSARDELLESGMAD 111

Query: 65  ALTASADQRSRLMMSTERVNQSTDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNT 124
            +TASADQR+RLM STER+N++ +R+KDSRRTMLETEELGVSILQDL SQRQSLLHAHNT
Sbjct: 112 TMTASADQRTRLMTSTERLNKTGERVKDSRRTMLETEELGVSILQDLHSQRQSLLHAHNT 171

Query: 125 LHGVDDNVSKSKKVLTAMSRRMSRNKWIIGTVVAVLVIAIILILYFKLAK 174
           LHGVDDN+ KSKK++T MSRRM++NKWIIG +V VLV+AII ILYFKL K
Sbjct: 172 LHGVDDNIGKSKKIMTNMSRRMNKNKWIIGCIVLVLVVAIIAILYFKLVK 221

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224080207|ref|XP_002306052.1| predicted protein [Populus trichocarpa] gi|118481869|gb|ABK92871.1| unknown [Populus trichocarpa] gi|222849016|gb|EEE86563.1| predicted protein [Populus trichocarpa]

 Score =  292 bits (748), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 141/168 (83%), Positives = 157/168 (93%)

Query: 5   IRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRLVSGNLNAAARDELLESGMAD 64
           IRKMDLEAR+LQPNVKAVLLAKLREYKSDLNNLK+EVKR+ SGNLNAAARDELLE+GM D
Sbjct: 52  IRKMDLEARNLQPNVKAVLLAKLREYKSDLNNLKTEVKRIGSGNLNAAARDELLEAGMTD 111

Query: 65  ALTASADQRSRLMMSTERVNQSTDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNT 124
           AL AS DQRSRLMM+TER+  S+DRIKDSRRTMLETEELGVSILQDL  QRQSLLHAHNT
Sbjct: 112 ALMASGDQRSRLMMATERLYHSSDRIKDSRRTMLETEELGVSILQDLHQQRQSLLHAHNT 171

Query: 125 LHGVDDNVSKSKKVLTAMSRRMSRNKWIIGTVVAVLVIAIILILYFKL 172
           LHGVDDN+ KSK+VLTA+SRRM+RNKW+I  ++AVLV+A+ILILYFKL
Sbjct: 172 LHGVDDNIGKSKRVLTAISRRMNRNKWMISAIIAVLVVAVILILYFKL 219

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225457347|ref|XP_002284602.1| PREDICTED: vesicle transport v-SNARE 13 [Vitis vinifera]

 Score =  290 bits (742), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 140/169 (82%), Positives = 157/169 (92%)

Query: 5   IRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRLVSGNLNAAARDELLESGMAD 64
           IRKMDLEARSLQP+VKA+LLAKLREYK+DLNN+K+EVKR+ S N N AARD LLESGMAD
Sbjct: 52  IRKMDLEARSLQPSVKAMLLAKLREYKTDLNNVKNEVKRITSANTNQAARDNLLESGMAD 111

Query: 65  ALTASADQRSRLMMSTERVNQSTDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNT 124
            +T SADQ++RL+MST R+NQS DRIK+SRRTMLETEELGVSILQDL  QRQSLLHAHNT
Sbjct: 112 TMTVSADQKTRLLMSTGRLNQSGDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNT 171

Query: 125 LHGVDDNVSKSKKVLTAMSRRMSRNKWIIGTVVAVLVIAIILILYFKLA 173
           LHGVDDN+SKSKK+LTAMSRRMSRNKWIIG+V+A LV+AIILILYFKLA
Sbjct: 172 LHGVDDNISKSKKILTAMSRRMSRNKWIIGSVIAALVLAIILILYFKLA 220

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297733941|emb|CBI15188.3| unnamed protein product [Vitis vinifera]

 Score =  290 bits (741), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 140/169 (82%), Positives = 157/169 (92%)

Query: 5   IRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRLVSGNLNAAARDELLESGMAD 64
           IRKMDLEARSLQP+VKA+LLAKLREYK+DLNN+K+EVKR+ S N N AARD LLESGMAD
Sbjct: 110 IRKMDLEARSLQPSVKAMLLAKLREYKTDLNNVKNEVKRITSANTNQAARDNLLESGMAD 169

Query: 65  ALTASADQRSRLMMSTERVNQSTDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNT 124
            +T SADQ++RL+MST R+NQS DRIK+SRRTMLETEELGVSILQDL  QRQSLLHAHNT
Sbjct: 170 TMTVSADQKTRLLMSTGRLNQSGDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNT 229

Query: 125 LHGVDDNVSKSKKVLTAMSRRMSRNKWIIGTVVAVLVIAIILILYFKLA 173
           LHGVDDN+SKSKK+LTAMSRRMSRNKWIIG+V+A LV+AIILILYFKLA
Sbjct: 230 LHGVDDNISKSKKILTAMSRRMSRNKWIIGSVIAALVLAIILILYFKLA 278

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255578288|ref|XP_002530011.1| vesicle transport V-snare protein vti1a, putative [Ricinus communis] gi|223530490|gb|EEF32373.1| vesicle transport V-snare protein vti1a, putative [Ricinus communis]

 Score =  288 bits (737), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 149/168 (88%), Positives = 160/168 (95%)

Query: 5   IRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRLVSGNLNAAARDELLESGMAD 64
           IRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKR+ SGNLN+AARDELLESGMAD
Sbjct: 52  IRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRIASGNLNSAARDELLESGMAD 111

Query: 65  ALTASADQRSRLMMSTERVNQSTDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNT 124
           ALTASADQRSRLMM+TER+N S+DR+KDSRRTMLETEELGVSILQDL  QRQSLLHAHNT
Sbjct: 112 ALTASADQRSRLMMTTERLNHSSDRVKDSRRTMLETEELGVSILQDLHQQRQSLLHAHNT 171

Query: 125 LHGVDDNVSKSKKVLTAMSRRMSRNKWIIGTVVAVLVIAIILILYFKL 172
           LHGVDDN+ KSKKVLTAM+RRM+RNKWIIG V+AVLV+ I LILYFKL
Sbjct: 172 LHGVDDNIGKSKKVLTAMARRMNRNKWIIGAVIAVLVVVIGLILYFKL 219

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388511477|gb|AFK43800.1| unknown [Lotus japonicus]

 Score =  287 bits (734), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 138/170 (81%), Positives = 157/170 (92%)

Query: 5   IRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRLVSGNLNAAARDELLESGMAD 64
           IRKMDLEARSLQPNV+AVLLAKLREYKSDLNNLKSEVK++VSGNLN +ARDELLESGMAD
Sbjct: 52  IRKMDLEARSLQPNVRAVLLAKLREYKSDLNNLKSEVKKIVSGNLNPSARDELLESGMAD 111

Query: 65  ALTASADQRSRLMMSTERVNQSTDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNT 124
            LTAS+DQRSRLMM T+R+N++ DR++ SR+TMLETEELGVSILQDL SQRQSLLHAH T
Sbjct: 112 TLTASSDQRSRLMMPTDRLNKTGDRVQQSRKTMLETEELGVSILQDLHSQRQSLLHAHTT 171

Query: 125 LHGVDDNVSKSKKVLTAMSRRMSRNKWIIGTVVAVLVIAIILILYFKLAK 174
           LHGVDDN+ KSKK+LT M+RRM++NKWII  +V VLVIAI LILYFKL+K
Sbjct: 172 LHGVDDNIGKSKKILTNMTRRMNKNKWIICGIVLVLVIAIALILYFKLSK 221

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357502019|ref|XP_003621298.1| Vesicle transport v-SNARE [Medicago truncatula] gi|124360255|gb|ABN08268.1| Vesicle transport v-SNARE; t-snare [Medicago truncatula] gi|355496313|gb|AES77516.1| Vesicle transport v-SNARE [Medicago truncatula]

 Score =  286 bits (732), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 139/170 (81%), Positives = 157/170 (92%)

Query: 5   IRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRLVSGNLNAAARDELLESGMAD 64
           IRKMDLEARSLQPN+K VLLAKLREYKSDLNN KSE+K+LVSGN+N +ARD LLESGMAD
Sbjct: 52  IRKMDLEARSLQPNIKGVLLAKLREYKSDLNNNKSELKKLVSGNMNPSARDMLLESGMAD 111

Query: 65  ALTASADQRSRLMMSTERVNQSTDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNT 124
           A+T SADQR RLM STER+N+S+DRIKDSRRTMLETEELGVSILQDL SQRQSLLHAH+T
Sbjct: 112 AMTVSADQRDRLMFSTERLNKSSDRIKDSRRTMLETEELGVSILQDLHSQRQSLLHAHDT 171

Query: 125 LHGVDDNVSKSKKVLTAMSRRMSRNKWIIGTVVAVLVIAIILILYFKLAK 174
           LHGVDDNVSKSKK+L+ MS+RM+RNK II T+VAVLV+ I+L LYFKL+K
Sbjct: 172 LHGVDDNVSKSKKILSNMSKRMNRNKCIISTIVAVLVLVIMLTLYFKLSK 221

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217075628|gb|ACJ86174.1| unknown [Medicago truncatula]

 Score =  286 bits (731), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 139/170 (81%), Positives = 157/170 (92%)

Query: 5   IRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRLVSGNLNAAARDELLESGMAD 64
           IRKMDLEARSLQPN+K VLLAKLREYKSDLNN KSE+K+LVSGN+N +ARD LLESGMAD
Sbjct: 44  IRKMDLEARSLQPNIKGVLLAKLREYKSDLNNNKSELKKLVSGNMNPSARDMLLESGMAD 103

Query: 65  ALTASADQRSRLMMSTERVNQSTDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNT 124
           A+T SADQR RLM STER+N+S+DRIKDSRRTMLETEELGVSILQDL SQRQSLLHAH+T
Sbjct: 104 AMTVSADQRDRLMFSTERLNKSSDRIKDSRRTMLETEELGVSILQDLHSQRQSLLHAHDT 163

Query: 125 LHGVDDNVSKSKKVLTAMSRRMSRNKWIIGTVVAVLVIAIILILYFKLAK 174
           LHGVDDNVSKSKK+L+ MS+RM+RNK II T+VAVLV+ I+L LYFKL+K
Sbjct: 164 LHGVDDNVSKSKKILSNMSKRMNRNKCIISTIVAVLVLVIMLTLYFKLSK 213

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388502072|gb|AFK39102.1| unknown [Lotus japonicus]

 Score =  285 bits (729), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 138/170 (81%), Positives = 157/170 (92%)

Query: 5   IRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRLVSGNLNAAARDELLESGMAD 64
           IRKMDLEARSLQPNV+AVLLAKLREYKSDLNNLKSEVK++VSGNLN +ARDELLESGMAD
Sbjct: 30  IRKMDLEARSLQPNVRAVLLAKLREYKSDLNNLKSEVKKIVSGNLNPSARDELLESGMAD 89

Query: 65  ALTASADQRSRLMMSTERVNQSTDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNT 124
            LTAS+DQRSRLMMST+R+N++ DR++ SR+TMLETEELGVSILQDL SQRQSLLHAH T
Sbjct: 90  TLTASSDQRSRLMMSTDRLNKTGDRVQQSRKTMLETEELGVSILQDLHSQRQSLLHAHTT 149

Query: 125 LHGVDDNVSKSKKVLTAMSRRMSRNKWIIGTVVAVLVIAIILILYFKLAK 174
           LHGVDDN+ KSKK+LT M+RRM++NKWII  +V VLVI I LILYFKL+K
Sbjct: 150 LHGVDDNIGKSKKILTNMTRRMNKNKWIICGIVLVLVIVIALILYFKLSK 199

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	174
TAIR|locus:2094662	195	VTI13 "vesicle transport V-sna	0.988	0.882	0.651	2.6e-54
TAIR|locus:2175733	221	SGR4 "SHOOT GRAVITROPSIM 4" [A	0.977	0.769	0.635	1e-52
TAIR|locus:2200595	222	VTI1B [Arabidopsis thaliana (t	0.856	0.671	0.651	6.2e-46
TAIR|locus:2164830	207	AT5G39630 [Arabidopsis thalian	0.770	0.647	0.413	1.3e-22
MGI|MGI:1855699	217	Vti1a "vesicle transport throu	0.827	0.663	0.281	1.4e-14
UNIPROTKB|J9NRK3	217	VTI1A "Uncharacterized protein	0.827	0.663	0.281	6.2e-14
UNIPROTKB|Q96AJ9	217	VTI1A "Vesicle transport throu	0.827	0.663	0.275	1e-13
ASPGD|ASPL0000044157	224	AN1973 [Emericella nidulans (t	0.810	0.629	0.301	2.1e-13
RGD|621490	224	Vti1a "vesicle transport throu	0.850	0.660	0.269	7.1e-13
UNIPROTKB|E1BYU6	187	VTI1A "Uncharacterized protein	0.781	0.727	0.276	1.2e-12

TAIR|locus:2094662 VTI13 "vesicle transport V-snare 13" [Arabidopsis thaliana (taxid:3702)]

 Score = 561 (202.5 bits), Expect = 2.6e-54, P = 2.6e-54
 Identities = 112/172 (65%), Positives = 129/172 (75%)

Query:     3 WQIRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRLVSGNLNAAARDELLESGM 62
             +Q++KMDLEAR+L PNVK+ LL KLREYKSDLNN K+EVKR+ SGNLNA ARDELLE+GM
Sbjct:    24 FQVKKMDLEARNLPPNVKSSLLVKLREYKSDLNNFKTEVKRITSGNLNATARDELLEAGM 83

Query:    63 ADALTASADQRSRLMMSTERVNQSTDRIKDSRRTMLETEELGVXXXXXXXXXXXXXXHAH 122
             AD LTASADQRSRLMMST+ + ++TDRIKDSRRT+LETEELGV               AH
Sbjct:    84 ADTLTASADQRSRLMMSTDHLGRTTDRIKDSRRTILETEELGVSILQDLHGQRQSLLRAH 143

Query:   123 NTLHGVDDNVSKSKKVLTAMSRRMSRNKWIIGTXXXXXXXXXXXXXYFKLAK 174
              TLHGVDDNV KSKK+LT M+RRM+RNKW IG              YFKL +
Sbjct:   144 ETLHGVDDNVGKSKKILTTMTRRMNRNKWTIGAIITVLVLAIIFILYFKLTR 195

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006944 "cellular membrane fusion" evidence=IPI

GO:0000149 "SNARE binding" evidence=TAS

GO:0004872 "receptor activity" evidence=TAS

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=TAS

TAIR|locus:2175733 SGR4 "SHOOT GRAVITROPSIM 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 546 (197.3 bits), Expect = 1.0e-52, P = 1.0e-52
 Identities = 108/170 (63%), Positives = 127/170 (74%)

Query:     5 IRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRLVSGNLNAAARDELLESGMAD 64
             IRKMDLEAR+L PN+K+ LL KLRE+KSDLNN K+EVKR+ SG LNAAARDELLE+GMAD
Sbjct:    52 IRKMDLEARTLPPNLKSSLLVKLREFKSDLNNFKTEVKRITSGQLNAAARDELLEAGMAD 111

Query:    65 ALTASADQRSRLMMSTERVNQSTDRIKDSRRTMLETEELGVXXXXXXXXXXXXXXHAHNT 124
               TASADQR+RLMMSTER+ ++TDR+KDSRRTM+ETEE+GV               AH T
Sbjct:   112 TKTASADQRARLMMSTERLGRTTDRVKDSRRTMMETEEIGVSILQDLHGQRQSLLRAHET 171

Query:   125 LHGVDDNVSKSKKVLTAMSRRMSRNKWIIGTXXXXXXXXXXXXXYFKLAK 174
             LHGVDDN+ KSKK+LT M+RRM++NKW IG              YFKL K
Sbjct:   172 LHGVDDNIGKSKKILTDMTRRMNKNKWTIGAIIIALIAAIFIILYFKLTK 221

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005770 "late endosome" evidence=IDA;TAS

GO:0005802 "trans-Golgi network" evidence=IDA;TAS

GO:0006896 "Golgi to vacuole transport" evidence=IGI

GO:0004872 "receptor activity" evidence=TAS

GO:0009630 "gravitropism" evidence=IMP

GO:0030140 "trans-Golgi network transport vesicle" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0000325 "plant-type vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0006623 "protein targeting to vacuole" evidence=RCA;IMP

GO:0005829 "cytosol" evidence=RCA

GO:0000902 "cell morphogenesis" evidence=RCA

GO:0006605 "protein targeting" evidence=RCA

GO:0006816 "calcium ion transport" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0007033 "vacuole organization" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0016049 "cell growth" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

GO:0016197 "endosomal transport" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

TAIR|locus:2200595 VTI1B [Arabidopsis thaliana (taxid:3702)]

 Score = 482 (174.7 bits), Expect = 6.2e-46, P = 6.2e-46
 Identities = 97/149 (65%), Positives = 114/149 (76%)

Query:     5 IRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRLVSGNLNAAARDELLESGMAD 64
             IRKMDLEARSLQP+ KAV L+KLREYKSDLN LK E KR+ S +   ++R+EL+ESGMAD
Sbjct:    53 IRKMDLEARSLQPSAKAVCLSKLREYKSDLNQLKKEFKRVSSADAKPSSREELMESGMAD 112

Query:    65 ALTASADQRSRLMMSTERVNQSTDRIKDSRRTMLETEELGVXXXXXXXXXXXXXXHAHNT 124
                 SADQR RL MS ER++QS+DRI++SRR MLETEE+G+              HAHN 
Sbjct:   113 LHAVSADQRGRLAMSVERLDQSSDRIRESRRLMLETEEVGISIVQDLSQQRQTLLHAHNK 172

Query:   125 LHGVDDNVSKSKKVLTAMSRRMSRNKWII 153
             LHGVDD + KSKKVLTAMSRRM+RNKWII
Sbjct:   173 LHGVDDAIDKSKKVLTAMSRRMTRNKWII 201

GO:0005634 "nucleus" evidence=ISM

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0006944 "cellular membrane fusion" evidence=RCA;IPI

GO:0000149 "SNARE binding" evidence=TAS

GO:0004872 "receptor activity" evidence=TAS

GO:0005770 "late endosome" evidence=TAS

GO:0005802 "trans-Golgi network" evidence=IDA;TAS

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA;TAS

GO:0005483 "soluble NSF attachment protein activity" evidence=TAS

GO:0005886 "plasma membrane" evidence=IDA

GO:0046907 "intracellular transport" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0006623 "protein targeting to vacuole" evidence=RCA;IMP

GO:0000902 "cell morphogenesis" evidence=RCA

GO:0006869 "lipid transport" evidence=RCA

GO:0010351 "lithium ion transport" evidence=RCA

GO:0016049 "cell growth" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

GO:0016197 "endosomal transport" evidence=RCA

GO:0016558 "protein import into peroxisome matrix" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

TAIR|locus:2164830 AT5G39630 [Arabidopsis thaliana (taxid:3702)]

 Score = 262 (97.3 bits), Expect = 1.3e-22, P = 1.3e-22
 Identities = 57/138 (41%), Positives = 85/138 (61%)

Query:     5 IRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRLVSGNLNAAARDELLESGMAD 64
             I KMD  A +L PN+K++LL KL+E KS L  L++E+KR  S NL    R+E+LE+  AD
Sbjct:    52 ISKMDHAASNLPPNIKSILLEKLKESKSSLKRLRNEIKRNTSENLKVTTREEVLEAEKAD 111

Query:    65 ALTASADQRSRLMMSTERVNQSTDRIKDSRRTMLETEELGVXXXXXXXXXXXXXXHAHNT 124
                  ADQRSRLM STE + ++ + IKDS+R +LETE +G+              ++   
Sbjct:   112 L----ADQRSRLMKSTEGLVRTREMIKDSQRKLLETENIGISILENLQRQKESLQNSQAM 167

Query:   125 LHGVDDNVSKSKKVLTAM 142
             LH +DD V +S+ ++ ++
Sbjct:   168 LHEIDDTVKESRSIVRSI 185

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006944 "cellular membrane fusion" evidence=RCA;IPI

GO:0000149 "SNARE binding" evidence=TAS

GO:0004872 "receptor activity" evidence=TAS

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=TAS

GO:0016192 "vesicle-mediated transport" evidence=RCA

MGI|MGI:1855699 Vti1a "vesicle transport through interaction with t-SNAREs 1A" [Mus musculus (taxid:10090)]

 Score = 186 (70.5 bits), Expect = 1.4e-14, P = 1.4e-14
 Identities = 42/149 (28%), Positives = 79/149 (53%)

Query:     5 IRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRLVSGNLNAAARDELLESGMAD 64
             + +MDLE R + P  + +   ++R YK ++  L+++ KR        A  DE+    + D
Sbjct:    52 LEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLETDFKRS-----RIAYSDEVRNELLGD 106

Query:    65 ALTASADQRSRLMMSTERVNQSTDRIKDSRRTMLETEELGVXXXXXXXXXXXXXXHAHNT 124
             A  +S +QR+ L+ +TER+ +S+ R++   +  +ETE++G                A + 
Sbjct:   107 AGNSSENQRAHLLDNTERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDREKIQRARDR 166

Query:   125 LHGVDDNVSKSKKVLTAMSRRMSRNKWII 153
             L   D N+ KS ++LT M RR+ +N+ ++
Sbjct:   167 LRDADANLGKSSRILTGMLRRIIQNRILL 195

GO:0005484 "SNAP receptor activity" evidence=ISO

GO:0005622 "intracellular" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=ISO

GO:0006810 "transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=ISO

GO:0008021 "synaptic vesicle" evidence=ISO

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0030136 "clathrin-coated vesicle" evidence=ISO

GO:0031201 "SNARE complex" evidence=ISO

GO:0042147 "retrograde transport, endosome to Golgi" evidence=ISO

GO:0043025 "neuronal cell body" evidence=ISO

GO:0048280 "vesicle fusion with Golgi apparatus" evidence=ISO

UNIPROTKB|J9NRK3 VTI1A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 180 (68.4 bits), Expect = 6.2e-14, P = 6.2e-14
 Identities = 42/149 (28%), Positives = 77/149 (51%)

Query:     5 IRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRLVSGNLNAAARDELLESGMAD 64
             + +MDLE R + P  + +   ++R YK ++  L+++ KR        A  DE+    + D
Sbjct:    52 LEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLETDFKRS-----RIAYSDEVRNELLGD 106

Query:    65 ALTASADQRSRLMMSTERVNQSTDRIKDSRRTMLETEELGVXXXXXXXXXXXXXXHAHNT 124
                +S +QR+ L+ +TER+ +S+ R++   +  +ETE++G                A   
Sbjct:   107 DGNSSENQRAHLLDNTERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDREKIQRARER 166

Query:   125 LHGVDDNVSKSKKVLTAMSRRMSRNKWII 153
             L   D N+ KS +VLT M RR+ +N+ ++
Sbjct:   167 LRETDANLGKSSRVLTGMLRRIIQNRILV 195

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

UNIPROTKB|Q96AJ9 VTI1A "Vesicle transport through interaction with t-SNAREs homolog 1A" [Homo sapiens (taxid:9606)]

 Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
 Identities = 41/149 (27%), Positives = 77/149 (51%)

Query:     5 IRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRLVSGNLNAAARDELLESGMAD 64
             + +MDLE R + P  + +   ++R YK ++  L+++ KR        A  DE+    + D
Sbjct:    52 LEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLETDFKRS-----RIAYSDEVRNELLGD 106

Query:    65 ALTASADQRSRLMMSTERVNQSTDRIKDSRRTMLETEELGVXXXXXXXXXXXXXXHAHNT 124
                +S +QR+ L+ +TER+ +S+ R++   +  +ETE++G                A   
Sbjct:   107 DGNSSENQRAHLLDNTERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDREKIQRARER 166

Query:   125 LHGVDDNVSKSKKVLTAMSRRMSRNKWII 153
             L   D N+ KS ++LT M RR+ +N+ ++
Sbjct:   167 LRETDANLGKSSRILTGMLRRIIQNRILL 195

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IEA

GO:0042147 "retrograde transport, endosome to Golgi" evidence=IMP;IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005484 "SNAP receptor activity" evidence=IDA

GO:0031201 "SNARE complex" evidence=TAS

ASPGD|ASPL0000044157 AN1973 [Emericella nidulans (taxid:162425)]

 Score = 175 (66.7 bits), Expect = 2.1e-13, P = 2.1e-13
 Identities = 44/146 (30%), Positives = 74/146 (50%)

Query:     7 KMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRLVSGNLNAAARDELLESGMADAL 66
             +M LE +++    ++ +  + R Y +D++  K ++K L S +  A   D   +    D  
Sbjct:    63 QMRLEKQNIPSAARSKVNTRFRNYATDIDEAKRKLKSL-SDDRKALFGDRYTD----DPQ 117

Query:    67 TASADQRSRLMMSTERVNQSTDRIKDSRRTMLETEELGVXXXXXXXXXXXXXXHAHNTLH 126
              A  +QR +L+  TER+ +S+ R+++S+R  LETE +G               H H  L 
Sbjct:   118 DAHLEQRQQLLSGTERLERSSARLRESQRIALETEGIGANVLADLHQQRETITHTHGMLG 177

Query:   127 GVDDNVSKSKKVLTAMSRRMSRNKWI 152
               + NV KS K L  M+RRM+ N+ I
Sbjct:   178 QSESNVDKSIKTLKGMARRMATNRLI 203

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005770 "late endosome" evidence=IEA

GO:0030173 "integral to Golgi membrane" evidence=IEA

GO:0000324 "fungal-type vacuole" evidence=IEA

GO:0031201 "SNARE complex" evidence=IEA

GO:0030428 "cell septum" evidence=IEA

GO:0005484 "SNAP receptor activity" evidence=IEA

GO:0006896 "Golgi to vacuole transport" evidence=IEA

GO:0006906 "vesicle fusion" evidence=IEA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=IEA

GO:0042144 "vacuole fusion, non-autophagic" evidence=IEA

RGD|621490 Vti1a "vesicle transport through interaction with t-SNAREs 1A" [Rattus norvegicus (taxid:10116)]

 Score = 170 (64.9 bits), Expect = 7.1e-13, P = 7.1e-13
 Identities = 41/152 (26%), Positives = 81/152 (53%)

Query:     5 IRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRLVSGNLNAAARDELL-ESGMA 63
             + +MDLE R + P  + +   ++R YK ++  L+++ KR      +   R+ELL ++G +
Sbjct:    52 LEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLETDFKRSRIA-YSDEVRNELLGDAGNS 110

Query:    64 --DALTASADQRSRLMMSTERVNQSTDRIKDSRRTMLETEELGVXXXXXXXXXXXXXXHA 121
               + L    ++R+ L+ +TER+ +S+ R++   +  +ETE++G                A
Sbjct:   111 SENQLIKLREERAHLLDNTERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDRERIQRA 170

Query:   122 HNTLHGVDDNVSKSKKVLTAMSRRMSRNKWII 153
                L   D N+ KS ++LT M RR+ +N+ ++
Sbjct:   171 RERLRETDANLGKSSRILTGMLRRIIQNRILL 202

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005484 "SNAP receptor activity" evidence=ISO

GO:0005794 "Golgi apparatus" evidence=ISO

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IDA

GO:0008021 "synaptic vesicle" evidence=IDA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0030136 "clathrin-coated vesicle" evidence=IDA

GO:0030672 "synaptic vesicle membrane" evidence=IEA

GO:0031201 "SNARE complex" evidence=IDA

GO:0042147 "retrograde transport, endosome to Golgi" evidence=ISO;ISS

GO:0043025 "neuronal cell body" evidence=IDA

GO:0048280 "vesicle fusion with Golgi apparatus" evidence=IDA

UNIPROTKB|E1BYU6 VTI1A "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 168 (64.2 bits), Expect = 1.2e-12, P = 1.2e-12
 Identities = 39/141 (27%), Positives = 72/141 (51%)

Query:     5 IRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRLVSGNLNAAARDELLESGMAD 64
             + +M+LE R + P  + +  +++R YK ++  L+++ KR        A  DE+    + D
Sbjct:    52 LEQMELEVREIPPQSRGMYSSRMRSYKQEMGKLEADFKRS-----RIAYSDEVRNELLGD 106

Query:    65 ALTASADQRSRLMMSTERVNQSTDRIKDSRRTMLETEELGVXXXXXXXXXXXXXXHAHNT 124
                +S +QR+ L+ +TER+ +S+ R++   +  +ETE++G                A   
Sbjct:   107 DGNSSENQRAHLLDNTERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDREKIQRARER 166

Query:   125 LHGVDDNVSKSKKVLTAMSRR 145
             L   D N+ KS ++LT M RR
Sbjct:   167 LRETDANLGKSSRILTGMLRR 187

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005484 "SNAP receptor activity" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0042147 "retrograde transport, endosome to Golgi" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pm.C_LG_IV0412 SubName- Full=Putative uncharacterized protein; (220 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	174
pfam12352	66	pfam12352, V-SNARE_C, Snare region anchored in the	4e-18
pfam05008	79	pfam05008, V-SNARE, Vesicle transport v-SNARE prot	9e-10
pfam03908	92	pfam03908, Sec20, Sec20	0.002

>gnl|CDD|152787 pfam12352, V-SNARE_C, Snare region anchored in the vesicle membrane C-terminus

 Score = 73.8 bits (182), Expect = 4e-18
 Identities = 28/66 (42%), Positives = 41/66 (62%)

Query: 81  ERVNQSTDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLT 140
           ER+ +  DR+K+S R   ET  +G +IL+DL SQR++L  A N LH  D+ + KS   L 
Sbjct: 1   ERLLREHDRLKNSHRIADETISIGQAILEDLHSQRETLKRARNKLHNTDNRLGKSNSTLR 60

Query: 141 AMSRRM 146
            ++RR 
Sbjct: 61  LINRRR 66

Within the SNARE proteins interactions in the C-terminal half of the SNARE helix are critical to the driving of membrane fusion; whereas interactions in the N-terminal half of the SNARE domain are important for promoting priming or docking of the vesicle pfam05008. Length = 66

>gnl|CDD|203149 pfam05008, V-SNARE, Vesicle transport v-SNARE protein N-terminus

 Score = 52.2 bits (126), Expect = 9e-10
 Identities = 20/39 (51%), Positives = 29/39 (74%)

Query: 5  IRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKR 43
          + +M+LE R+L  + +A   AKLREYKS+L+ LK E+KR
Sbjct: 41 LDQMELEVRNLPSSERAKYNAKLREYKSELDKLKRELKR 79

V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this. This domain is the N-terminal half of the V-Snare proteins. Length = 79

>gnl|CDD|112708 pfam03908, Sec20, Sec20

 Score = 35.5 bits (82), Expect = 0.002
 Identities = 13/89 (14%), Positives = 40/89 (44%)

Query: 84  NQSTDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMS 143
            Q T+ ++   + +++        L +L +   SL  A+      +  +S+S+K++  + 
Sbjct: 4   KQITESLRRISQLLVQGVLQSALNLDELVASTNSLEKANEEYKQFEGVLSRSRKLVKKLE 63

Query: 144 RRMSRNKWIIGTVVAVLVIAIILILYFKL 172
           RR   +K ++       +  +  +++ ++
Sbjct: 64  RRDHTDKRLVYLSFGFFLACVSYVVWKRI 92

Sec20 is a membrane glycoprotein associated with secretory pathway. Length = 92

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	174
KOG1666	220	consensus V-SNARE [Intracellular trafficking, secr	100.0
KOG3251	213	consensus Golgi SNAP receptor complex member [Intr	99.87
KOG3208	231	consensus SNARE protein GS28 [Intracellular traffi	99.82
PF12352	66	V-SNARE_C: Snare region anchored in the vesicle me	99.61
PF03908	92	Sec20: Sec20; InterPro: IPR005606 Sec20 is a membr	99.51
PF05008	79	V-SNARE: Vesicle transport v-SNARE protein N-termi	98.79
KOG0812	311	consensus SNARE protein SED5/Syntaxin 5 [Intracell	98.39
KOG3202	235	consensus SNARE protein TLG1/Syntaxin 6 [Intracell	98.1
PF00957	89	Synaptobrevin: Synaptobrevin; InterPro: IPR001388	98.06
PF09753	251	Use1: Membrane fusion protein Use1; InterPro: IPR0	98.01
KOG0810	297	consensus SNARE protein Syntaxin 1 and related pro	97.49
KOG3065	273	consensus SNAP-25 (synaptosome-associated protein)	97.34
COG5074	280	t-SNARE complex subunit, syntaxin [Intracellular t	97.32
smart00397	66	t_SNARE Helical region found in SNAREs. All alpha-	97.22
KOG0860	116	consensus Synaptobrevin/VAMP-like protein [Intrace	97.22
KOG0809	305	consensus SNARE protein TLG2/Syntaxin 16 [Intracel	97.19
KOG2678	244	consensus Predicted membrane protein [Function unk	97.09
COG5325	283	t-SNARE complex subunit, syntaxin [Intracellular t	96.93
KOG0811	269	consensus SNARE protein PEP12/VAM3/Syntaxin 7/Synt	96.93
KOG3894	316	consensus SNARE protein Syntaxin 18/UFE1 [Intracel	96.79
KOG3385	118	consensus V-SNARE [Intracellular trafficking, secr	96.79
KOG1666	220	consensus V-SNARE [Intracellular trafficking, secr	96.54
PF05739	63	SNARE: SNARE domain; InterPro: IPR000727 The proce	96.42
PRK10884	206	SH3 domain-containing protein; Provisional	96.06
cd00193	60	t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fu	95.48
PF04210	70	MtrG: Tetrahydromethanopterin S-methyltransferase,	93.86
KOG0860	116	consensus Synaptobrevin/VAMP-like protein [Intrace	93.52
PRK01026	77	tetrahydromethanopterin S-methyltransferase subuni	93.36
PF00957	89	Synaptobrevin: Synaptobrevin; InterPro: IPR001388	93.36
PF09889	59	DUF2116: Uncharacterized protein containing a Zn-r	92.56
TIGR01149	70	mtrG N5-methyltetrahydromethanopterin:coenzyme M m	92.46
COG4064	75	MtrG Tetrahydromethanopterin S-methyltransferase,	91.99
PF14362	301	DUF4407: Domain of unknown function (DUF4407)	89.8
KOG0859	217	consensus Synaptobrevin/VAMP-like protein [Intrace	88.55
PF09889	59	DUF2116: Uncharacterized protein containing a Zn-r	88.54
PF12911	56	OppC_N: N-terminal TM domain of oligopeptide trans	87.49
PF12352	66	V-SNARE_C: Snare region anchored in the vesicle me	86.94
KOG3208	231	consensus SNARE protein GS28 [Intracellular traffi	86.8
KOG3065	273	consensus SNAP-25 (synaptosome-associated protein)	86.41
PF09753	251	Use1: Membrane fusion protein Use1; InterPro: IPR0	85.08
PF06024	101	DUF912: Nucleopolyhedrovirus protein of unknown fu	84.74
PHA03240	258	envelope glycoprotein M; Provisional	84.49
PHA02650	81	hypothetical protein; Provisional	84.42
PF03904	230	DUF334: Domain of unknown function (DUF334); Inter	84.28
PF00523	490	Fusion_gly: Fusion glycoprotein F0; InterPro: IPR0	83.95
PF07798	177	DUF1640: Protein of unknown function (DUF1640); In	82.32
PF05283	186	MGC-24: Multi-glycosylated core protein 24 (MGC-24	81.85
PF12669	58	P12: Virus attachment protein p12 family	81.7
KOG0862	216	consensus Synaptobrevin/VAMP-like protein SEC22 [I	81.03
PHA02819	71	hypothetical protein; Provisional	80.79
PF08114	43	PMP1_2: ATPase proteolipid family; InterPro: IPR01	80.76
PHA03164	88	hypothetical protein; Provisional	80.57
PHA02844	75	putative transmembrane protein; Provisional	80.23

>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2e-41  Score=256.44  Aligned_cols=172  Identities=53%  Similarity=0.760  Sum_probs=161.7

Q ss_pred             hHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHhhHHhhcCCCCCcccccHHHHHHHhhhhH
Q 030656            2 FWQIRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRLVSGNLNAAARDELLESGMADALTASADQRSRLMMSTE   81 (174)
Q Consensus         2 ~~~i~qme~E~~~~~~~~r~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~R~~Ll~~~~~~~~~~~~~~r~~ll~~~~   81 (174)
                      .++|+|||+|++.+||+.|..|..|+++|++++++++.++++..+......+|+++++....|+.....++|++++++++
T Consensus        49 ~ell~qMdlEvr~lp~~~Rs~~~~KlR~yksdl~~l~~e~k~~~~~~~~~~~rde~~~~~~add~~~~~dQR~rLl~nTe  128 (220)
T KOG1666|consen   49 NELLDQMDLEVRELPPNFRSSYLSKLREYKSDLKKLKRELKRTTSRNLNAGDRDELLEALEADDQNISADQRARLLQNTE  128 (220)
T ss_pred             HHHHHHHHHHHHhCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHhhhhccccccchhHHHHHHhhhH
Confidence            47899999999999999999999999999999999999999988443446799999988765555567899999999999


Q ss_pred             HhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030656           82 RVNQSTDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSRRMSRNKWIIGTVVAVLV  161 (174)
Q Consensus        82 ~l~~~~~~L~~s~r~~~ete~~g~~~l~~L~~Qre~L~~~~~~~~~i~~~l~~s~~ll~~i~rr~~~dk~il~~ii~~l~  161 (174)
                      +|.+++++|.+|+|++.|||+||.+|+++|++|||+|++++..+.++++++++|+++++.|.||+.+|||++++||++++
T Consensus       129 rLeRst~rl~ds~Ria~ETEqIG~~IL~dL~~QRe~L~rar~rL~~td~~lgkS~kiL~tM~RR~~~nk~~~~aii~~l~  208 (220)
T KOG1666|consen  129 RLERSTDRLKDSQRIALETEQIGSEILEDLHGQREQLERARERLRETDANLGKSRKILTTMTRRLIRNKFTLTAIIALLV  208 (220)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhc
Q 030656          162 IAIILILYFKLA  173 (174)
Q Consensus       162 ~~i~~v~~~k~~  173 (174)
                      ++|++++|+||+
T Consensus       209 ~~il~ilY~kf~  220 (220)
T KOG1666|consen  209 LAILLILYSKFT  220 (220)
T ss_pred             HHHHHHHHHhcC
Confidence            999999999995

>KOG3251 consensus Golgi SNAP receptor complex member [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.87  E-value=7.9e-21  Score=145.09  Aligned_cols=161  Identities=19%  Similarity=0.281  Sum_probs=133.7

Q ss_pred             hHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccc----cHHhhHHhhcCCCCCcccccHHHHHHHh
Q 030656            2 FWQIRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRLVSGNL----NAAARDELLESGMADALTASADQRSRLM   77 (174)
Q Consensus         2 ~~~i~qme~E~~~~~~~~r~~~~~~~~~~~~~l~~l~~~~~~~~~~~~----~~~~R~~Ll~~~~~~~~~~~~~~r~~ll   77 (174)
                      +..|..|+.-+...||+.|.+..-++.+.+.++..++..+++......    ...+|.+|+++.++.++.+..-..+..+
T Consensus        46 ~s~~~rl~~~~~~epp~~rq~~rlr~dQl~~d~~~l~~~l~~~~~R~~~r~~~~~er~~lL~~~~~~~~~~~~~~~D~el  125 (213)
T KOG3251|consen   46 ASRCQRLDVLVSKEPPKSRQAARLRVDQLLEDVEHLQTSLRTSMNRNNRREQQARERVELLDRRFTNGATGTSIPFDEEL  125 (213)
T ss_pred             HHHHHHHHhHhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCCCCCccCCCcchHHH
Confidence            457889999999999999888888899999999999999987766543    3678999998877553222211123333


Q ss_pred             hhhHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030656           78 MSTERVNQSTDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSRRMSRNKWIIGTVV  157 (174)
Q Consensus        78 ~~~~~l~~~~~~L~~s~r~~~ete~~g~~~l~~L~~Qre~L~~~~~~~~~i~~~l~~s~~ll~~i~rr~~~dk~il~~ii  157 (174)
                             +-.+.+.+|++.+++....|.+++++|..||-.|.++++++.++.+.||.|+.+|+.|.||...||+|+|+++
T Consensus       126 -------~~~d~l~~s~~~lDd~l~~G~~ile~l~~Q~~~L~~~~~ki~~~~ntLGlSn~ti~lIeRR~~~Dk~iF~~G~  198 (213)
T KOG3251|consen  126 -------QENDSLKRSHNMLDDLLESGSAILENLVEQRLTLKGTQKKILDILNTLGLSNQTIRLIERRVREDKIIFYGGV  198 (213)
T ss_pred             -------HhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhHHHHHHHH
Confidence                   3445677899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 030656          158 AVLVIAIILILY  169 (174)
Q Consensus       158 ~~l~~~i~~v~~  169 (174)
                      ++|++++++++|
T Consensus       199 i~~~v~~yl~~~  210 (213)
T KOG3251|consen  199 ILTLVIMYLFYR  210 (213)
T ss_pred             HHHHHHHHHHHH
Confidence            998777665533

>KOG3208 consensus SNARE protein GS28 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.82  E-value=5.3e-19  Score=134.99  Aligned_cols=141  Identities=22%  Similarity=0.292  Sum_probs=122.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHhhHHhhcCCCCCc---ccc-cHHHHHHHhhhhHHhhchhHHHHHHHH
Q 030656           20 KAVLLAKLREYKSDLNNLKSEVKRLVSGNLNAAARDELLESGMADA---LTA-SADQRSRLMMSTERVNQSTDRIKDSRR   95 (174)
Q Consensus        20 r~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~R~~Ll~~~~~~~---~~~-~~~~r~~ll~~~~~l~~~~~~L~~s~r   95 (174)
                      -+.....+++|++.|.++..+|++.+.+++...+|+.|++++..+.   +.. +...+       +.+.+..++|+++.+
T Consensus        84 ~aa~~htL~RHrEILqdy~qef~rir~n~~a~~e~~~Ll~s~~~~~~~~~~~~~~~~~-------e~~lkE~~~in~s~~  156 (231)
T KOG3208|consen   84 SAAVMHTLQRHREILQDYTQEFRRIRSNIDAKRERESLLESVRADISSYPSASGFNRG-------EMYLKEHDHINNSIR  156 (231)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCccCCCchH-------HHHHHHhccccchHH
Confidence            4789999999999999999999999999988899999998865443   111 11111       345556778889999


Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHhcHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030656           96 TMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSRRMSRNKWIIGTVVAVLVIAIILI  167 (174)
Q Consensus        96 ~~~ete~~g~~~l~~L~~Qre~L~~~~~~~~~i~~~l~~s~~ll~~i~rr~~~dk~il~~ii~~l~~~i~~v  167 (174)
                      +++|+.++|.+|.++|+.||..+.+++.++.++...+|..|.+|..|++|..+|.+|+.+||.+|+++++|+
T Consensus       157 ~vde~Is~A~aTre~l~~Qrs~l~~i~~k~~~~a~r~P~IN~Ll~kIk~kkrrdslILa~Vis~C~llllfy  228 (231)
T KOG3208|consen  157 LVDELISQAQATRENLHSQRSVLGGINNKVNNIANRFPAINQLLQKIKIKKRRDSLILAAVISVCTLLLLFY  228 (231)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999997766544

>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C

Probab=99.61  E-value=5.8e-15  Score=94.68  Aligned_cols=66  Identities=38%  Similarity=0.595  Sum_probs=62.3

Q ss_pred             HHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcHhhhhhhHHHHHHHHHHHHHHH
Q 030656           81 ERVNQSTDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSRRM  146 (174)
Q Consensus        81 ~~l~~~~~~L~~s~r~~~ete~~g~~~l~~L~~Qre~L~~~~~~~~~i~~~l~~s~~ll~~i~rr~  146 (174)
                      +.+.+++++|++|.++++||+++|.+|+.+|..||++|.++++++.++++.++.|+++|+.|.||.
T Consensus         1 d~l~~e~~~L~~s~~~~~e~~~~g~~~l~~L~~Qre~L~~~~~kl~~i~~~l~~s~~~l~~I~rR~   66 (66)
T PF12352_consen    1 DRLLRESDSLQRSHRMADETEEIGAATLEDLRSQREQLKRVRDKLDDIDSNLPKSNSLLKRISRRK   66 (66)
T ss_dssp             HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHccC
Confidence            356778889999999999999999999999999999999999999999999999999999999984

>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway

Probab=99.51  E-value=5.2e-13  Score=91.10  Aligned_cols=86  Identities=21%  Similarity=0.356  Sum_probs=82.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030656           86 STDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSRRMSRNKWIIGTVVAVLVIAII  165 (174)
Q Consensus        86 ~~~~L~~s~r~~~ete~~g~~~l~~L~~Qre~L~~~~~~~~~i~~~l~~s~~ll~~i~rr~~~dk~il~~ii~~l~~~i~  165 (174)
                      -+..|.++++++.+..+.|..+++.|..|+++|.++++...++.+.+..|+++++.+.|+..+||+++|+.+++++++++
T Consensus         6 vT~~L~rt~~~m~~ev~~s~~t~~~L~~Ss~~L~~~~~e~~~~~~~l~~s~~ll~~l~r~~~~D~~li~~~~~~f~~~v~   85 (92)
T PF03908_consen    6 VTESLRRTRQMMAQEVERSELTLQTLEESSATLRSTNDEYDGQSSLLKKSRKLLKKLERRDKTDRILIFFAFLFFLLVVL   85 (92)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHH
Q 030656          166 LILYFK  171 (174)
Q Consensus       166 ~v~~~k  171 (174)
                      +|+|.+
T Consensus        86 yI~~rR   91 (92)
T PF03908_consen   86 YILWRR   91 (92)
T ss_pred             HHhhhc
Confidence            999865

>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles

Probab=98.79  E-value=1.9e-08  Score=66.45  Aligned_cols=42  Identities=40%  Similarity=0.642  Sum_probs=38.6

Q ss_pred             hHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 030656            2 FWQIRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKR   43 (174)
Q Consensus         2 ~~~i~qme~E~~~~~~~~r~~~~~~~~~~~~~l~~l~~~~~~   43 (174)
                      ..+|+|||+|++++|++.|..|..+++.|+.+++.++++|++
T Consensus        38 ~~~l~qMe~E~~~~p~s~r~~~~~kl~~yr~~l~~lk~~l~~   79 (79)
T PF05008_consen   38 EELLKQMELEVRSLPPSERNQYKSKLRSYRSELKKLKKELKK   79 (79)
T ss_dssp             HHHHHHHHHHHCTS-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            368999999999999999999999999999999999999864

The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.

>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.39  E-value=0.00013  Score=58.63  Aligned_cols=86  Identities=17%  Similarity=0.328  Sum_probs=71.2

Q ss_pred             Hhhhh-HHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 030656           76 LMMST-ERVNQSTDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSRRMSRNKWIIG  154 (174)
Q Consensus        76 ll~~~-~~l~~~~~~L~~s~r~~~ete~~g~~~l~~L~~Qre~L~~~~~~~~~i~~~l~~s~~ll~~i~rr~~~dk~il~  154 (174)
                      ++.+. +....-...+.+......|.-+|-.+...-...|.|.++++.+++++++-+++.|.+.|...--|+-.|+|+++
T Consensus       214 ll~es~~Y~Q~R~~~~q~IEstIsElG~IF~QLA~mVseQ~E~i~RID~nv~ds~lnI~gA~~ellKy~e~vSSNRwLmv  293 (311)
T KOG0812|consen  214 LLDESDEYVQERAKTMQNIESTISELGGIFQQLASMVSEQEETIQRIDDNVDDSDLNIEGAHSELLKYFERVSSNRWLMV  293 (311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHhccchHHHH
Confidence            34444 34444456667777788888888888889999999999999999999999999999999999999999999997


Q ss_pred             HHHHHHH
Q 030656          155 TVVAVLV  161 (174)
Q Consensus       155 ~ii~~l~  161 (174)
                      =|++|++
T Consensus       294 kiF~i~i  300 (311)
T KOG0812|consen  294 KIFGILI  300 (311)
T ss_pred             HHHHHHH
Confidence            7666653

>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.10  E-value=0.0005  Score=54.37  Aligned_cols=139  Identities=14%  Similarity=0.211  Sum_probs=89.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcccccHHhhHHhhcCCCCCc----c---cccHHHHHHHhhhhHHhhchhHHHHHHHHHH
Q 030656           25 AKLREYKSDLNNLKSEVKRLVSGNLNAAARDELLESGMADA----L---TASADQRSRLMMSTERVNQSTDRIKDSRRTM   97 (174)
Q Consensus        25 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~R~~Ll~~~~~~~----~---~~~~~~r~~ll~~~~~l~~~~~~L~~s~r~~   97 (174)
                      ..+.+.+..+..++..|....  ..+...|..|++....++    .   .+..............+.++...|+.....+
T Consensus        84 ~~i~~lr~q~~~~~~~~~~~~--~~~~~~r~~l~~~~~~~~~~~~~~~~~~~D~v~~~~~~qqqm~~eQDe~Ld~ls~ti  161 (235)
T KOG3202|consen   84 RFIDNLRTQLRQMKSKMAMSG--FANSNIRDILLGPEKSPNLDEAMSRASGLDNVQEIVQLQQQMLQEQDEGLDGLSATV  161 (235)
T ss_pred             HHHHHHHHHHHHHHHHHHhhc--cccccchhhhcCCCCCCchhhhHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345555666666666665511  111123777775532221    0   0001011111222345667778899999999


Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHhcHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030656           98 LETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSRRMSRNKWIIGTVVAVLVIAIILI  167 (174)
Q Consensus        98 ~ete~~g~~~l~~L~~Qre~L~~~~~~~~~i~~~l~~s~~ll~~i~rr~~~dk~il~~ii~~l~~~i~~v  167 (174)
                      .-..++|.++-++|..|...|..-...++.+.+.+.+..+-+..+++  .+..|-.|++|++++++++++
T Consensus       162 ~rlk~~a~~~g~EL~~Q~~llDdl~~e~d~t~srl~~~~~~l~~v~~--~~s~~~~~~~il~l~~~~~lv  229 (235)
T KOG3202|consen  162 QRLKGMALAMGEELEEQGRLLDDLDNEMDRTESRLDRVMKRLAKVNR--MASQCSQWCAILLLVGLLLLV  229 (235)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhccccchhHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999  344444333333333333333

>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis

Probab=98.06  E-value=0.00032  Score=47.17  Aligned_cols=85  Identities=19%  Similarity=0.327  Sum_probs=72.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030656           88 DRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSRRMSRNKWIIGTVVAVLVIAIILI  167 (174)
Q Consensus        88 ~~L~~s~r~~~ete~~g~~~l~~L~~Qre~L~~~~~~~~~i~~~l~~s~~ll~~i~rr~~~dk~il~~ii~~l~~~i~~v  167 (174)
                      +.+...+..++++.++..+.+..+..-.|.|.....+..++......=.+--+.+.|+++-.++-+++++++++++++++
T Consensus         3 dkl~~i~~~v~~v~~im~~Ni~~ll~Rge~L~~L~~kt~~L~~~a~~F~k~a~~l~r~~~~~~~k~~~i~~~iv~~~~~~   82 (89)
T PF00957_consen    3 DKLEQIQEQVEEVKNIMRENIDKLLERGEKLEELEDKTEELSDNAKQFKKNAKKLKRKMWWRNYKLYIIIIIIVIIIILI   82 (89)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhhhhH
Confidence            45677888899999999999999999999999999999999999999999999999999988888877777777777776


Q ss_pred             HHHHh
Q 030656          168 LYFKL  172 (174)
Q Consensus       168 ~~~k~  172 (174)
                      +++-+
T Consensus        83 i~~~~   87 (89)
T PF00957_consen   83 IIIVI   87 (89)
T ss_dssp             HHHTT
T ss_pred             HHHHH
Confidence            66543

Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....

>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport

Probab=98.01  E-value=0.0014  Score=52.50  Aligned_cols=81  Identities=14%  Similarity=0.181  Sum_probs=60.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 030656           91 KDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSRRMSRNKWIIGT-VVAVLVIAIILILY  169 (174)
Q Consensus        91 ~~s~r~~~ete~~g~~~l~~L~~Qre~L~~~~~~~~~i~~~l~~s~~ll~~i~rr~~~dk~il~~-ii~~l~~~i~~v~~  169 (174)
                      ++.-.++....+.+...-..|......|.++...++.-...++..+.-++.+.++...  |.+|+ ++++++++|+.|+|
T Consensus       170 ~em~~La~~LK~~s~~~~~~l~~D~~~L~~~~~~~d~n~~~l~~~~~rl~~~~~~~~~--~~~~~~i~~v~~~Fi~mvl~  247 (251)
T PF09753_consen  170 EEMLSLARQLKENSLAFSQILKEDNKVLDRTEEGLDRNLSSLKRESKRLKEHSSKSWG--CWTWLMIFVVIIVFIMMVLF  247 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHH
Confidence            3444466666777777888999999999999999999999999999999998776555  55544 45555556666666


Q ss_pred             HHhc
Q 030656          170 FKLA  173 (174)
Q Consensus       170 ~k~~  173 (174)
                      .|+|
T Consensus       248 iri~  251 (251)
T PF09753_consen  248 IRIF  251 (251)
T ss_pred             heeC
Confidence            6664

They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].

>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.49  E-value=0.0077  Score=49.36  Aligned_cols=84  Identities=17%  Similarity=0.285  Sum_probs=63.8

Q ss_pred             hchhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcHhhhhhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Q 030656           84 NQSTDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLT---AMSRRMSRNKWIIGTVVAVL  160 (174)
Q Consensus        84 ~~~~~~L~~s~r~~~ete~~g~~~l~~L~~Qre~L~~~~~~~~~i~~~l~~s~~ll~---~i~rr~~~dk~il~~ii~~l  160 (174)
                      ..=.+.+.+-.+.+.|..++=.....--..|-|++.++..++......+..+..-++   ...++..+.|||.+++++++
T Consensus       202 q~Rh~~ik~LEksi~ELhqlFlDMa~LVe~QgEmvd~IE~nV~~A~~~V~~g~~~~~kAv~~qkkaRK~k~i~ii~~iii  281 (297)
T KOG0810|consen  202 QERHDEIKKLEKSIRELHQLFLDMAVLVESQGEMVDRIENNVENAVDYVEQGVDHLKKAVKYQKKARKWKIIIIIILIII  281 (297)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhceeeeehHHHHH
Confidence            333455666777788888888888888889999999999999999999999998887   77777777777666555544


Q ss_pred             HHHHHHH
Q 030656          161 VIAIILI  167 (174)
Q Consensus       161 ~~~i~~v  167 (174)
                      +++++++
T Consensus       282 ~~v~v~~  288 (297)
T KOG0810|consen  282 IVVLVVV  288 (297)
T ss_pred             HHHHhhh
Confidence            4444333

>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.34  E-value=0.0023  Score=51.80  Aligned_cols=61  Identities=20%  Similarity=0.255  Sum_probs=56.0

Q ss_pred             hchhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcHhhhhhhHHHHHHHHHHHHH
Q 030656           84 NQSTDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSR  144 (174)
Q Consensus        84 ~~~~~~L~~s~r~~~ete~~g~~~l~~L~~Qre~L~~~~~~~~~i~~~l~~s~~ll~~i~r  144 (174)
                      ..+..+-.++.+++.|++..|..|+..|..|+|+|.+|...++++..++..+.+.|..+..
T Consensus        75 ~eSl~St~~~L~~~~e~~~~g~~Tl~~L~~Q~eQL~rte~~lD~i~~d~~~~er~l~~l~~  135 (273)
T KOG3065|consen   75 QESLKSTRRMLKLAEESREDGSRTLVMLSEQGEQLERTEKNLDDIKVDLKRAERNLTELKG  135 (273)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHhhhhhhHHHHHHHHHHHHHHHH
Confidence            4456777788889999999999999999999999999999999999999999999998864

>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]

Probab=97.32  E-value=0.039  Score=43.48  Aligned_cols=82  Identities=17%  Similarity=0.290  Sum_probs=65.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcHhhhhhhHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030656           87 TDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSK----KVLTAMSRRMSRNKWIIGTVVAVLVI  162 (174)
Q Consensus        87 ~~~L~~s~r~~~ete~~g~~~l~~L~~Qre~L~~~~~~~~~i~~~l~~s~----~ll~~i~rr~~~dk~il~~ii~~l~~  162 (174)
                      ...|....+++.|.-+.=+.+-+....|.|....+...+.+...+++.+.    +-++. .|..+.+||+-|+|+++.++
T Consensus       184 h~~ikkiEkt~ael~qLfndm~~~V~eq~e~Vd~I~~~~~~~~~n~~~g~~h~d~Avks-aRaaRkkki~c~gI~~iii~  262 (280)
T COG5074         184 HQEIKKIEKTMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQENVEQGVGHTDKAVKS-ARAARKKKIRCYGICFIIII  262 (280)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHhhHhhHHhhHHHhhhhHHHHHHH-HHHHHhcceehhhhHHHHHH
Confidence            34566777888999999888888999999999999999999988888776    44555 77888888888877776666


Q ss_pred             HHHHHHH
Q 030656          163 AIILILY  169 (174)
Q Consensus       163 ~i~~v~~  169 (174)
                      +|++|+|
T Consensus       263 viv~vv~  269 (280)
T COG5074         263 VIVVVVF  269 (280)
T ss_pred             HHHHHHh
Confidence            6655553

>smart00397 t_SNARE Helical region found in SNAREs

Probab=97.22  E-value=0.0035  Score=38.94  Aligned_cols=60  Identities=15%  Similarity=0.247  Sum_probs=54.0

Q ss_pred             HhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcHhhhhhhHHHHHHHHHH
Q 030656           82 RVNQSTDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTA  141 (174)
Q Consensus        82 ~l~~~~~~L~~s~r~~~ete~~g~~~l~~L~~Qre~L~~~~~~~~~i~~~l~~s~~ll~~  141 (174)
                      .+.+....|......+.++.++|..+...+..|.+.|.++..++..+...+..+.+-++.
T Consensus         6 ~~~~~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~d~~~~~~~~~~~~l~~   65 (66)
T smart00397        6 MEEERDEELEQLEKSIGELKQIFLDMGTELEEQGEQLDRIEDNVDDADVNLKKANKRLKK   65 (66)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhc
Confidence            455667788999999999999999999999999999999999999999999999876653

All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".

>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.22  E-value=0.02  Score=40.22  Aligned_cols=83  Identities=16%  Similarity=0.358  Sum_probs=58.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcHhhhhhhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Q 030656           87 TDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSRRM----SRNKWIIGTVVAVLVI  162 (174)
Q Consensus        87 ~~~L~~s~r~~~ete~~g~~~l~~L~~Qre~L~~~~~~~~~i~~~l~~s~~ll~~i~rr~----~~dk~il~~ii~~l~~  162 (174)
                      +..+.+++..++|+.+|..+-.+....--++|....++.+........=++.-..+.|++    ++-++|+++|++++++
T Consensus        28 ~~k~~~tq~QvdeVv~IMr~NV~KVlER~ekL~~L~drad~L~~~as~F~~~A~klkrk~wWkn~Km~~il~~v~~i~l~  107 (116)
T KOG0860|consen   28 NDKLQQTQAQVDEVVDIMRENVEKVLERGEKLDELDDRADQLQAGASQFEKTAVKLKRKMWWKNCKMRIILGLVIIILLV  107 (116)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            346667888888899999998888888888999888888887777766555555555554    4555566665555555


Q ss_pred             HHHHHHH
Q 030656          163 AIILILY  169 (174)
Q Consensus       163 ~i~~v~~  169 (174)
                      +|++.+|
T Consensus       108 iiii~~~  114 (116)
T KOG0860|consen  108 VIIIYIF  114 (116)
T ss_pred             HHHHHHh
Confidence            5544443

>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.19  E-value=0.029  Score=45.57  Aligned_cols=136  Identities=18%  Similarity=0.149  Sum_probs=85.1

Q ss_pred             CChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-----HHhhHHhhcC----CCC-Cccc--ccHHHHHHHh--hh-
Q 030656           15 LQPNVKAVLLAKLREYKSDLNNLKSEVKRLVSGNLN-----AAARDELLES----GMA-DALT--ASADQRSRLM--MS-   79 (174)
Q Consensus        15 ~~~~~r~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-----~~~R~~Ll~~----~~~-~~~~--~~~~~r~~ll--~~-   79 (174)
                      .||+++.-..+-...+-..|..+..+|+...+.+-.     +.+-.+.+.+    .+. |+.+  ....++++++  .+ 
T Consensus       130 ~~~~e~~~~~n~~~~la~~LQ~~s~~fR~~Qs~YLK~l~~~ee~~~~~e~~~~~~~~~~dd~d~~~~~~qe~ql~~~e~~  209 (305)
T KOG0809|consen  130 LSPSERLLRKNAQGYLALQLQTLSREFRGLQSKYLKRLRNREENSQEYEDSLDNTVDLPDDEDFSDRTFQEQQLMLFENN  209 (305)
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhcccchhhhccccccCcchhhhhhhhHHHHHHHHHhcc
Confidence            356666666677788888999999999887766421     1111122211    110 0111  1112233332  12 


Q ss_pred             hHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcHhhhhhhHHHHHHHHHHHHHHHHHHH
Q 030656           80 TERVNQSTDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSRRMSRNK  150 (174)
Q Consensus        80 ~~~l~~~~~~L~~s~r~~~ete~~g~~~l~~L~~Qre~L~~~~~~~~~i~~~l~~s~~ll~~i~rr~~~dk  150 (174)
                      .....+-..-+......+.|..++-.+.-.-..+|--.+.++.-++.++...+..|.+-+....+-...++
T Consensus       210 ~~~~~erE~EV~ql~~sI~dL~~if~DL~~lVvdQGtvvDRIDyNvEqt~~~v~~a~keL~KAe~yQk~~~  280 (305)
T KOG0809|consen  210 EEVVREREKEVTQLVESIYDLNQIFKDLSALVVDQGTVVDRIDYNVEQTQVRVEDALKELHKAERYQKRNK  280 (305)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheecchhhhhhhHHhHHHHHHHHHHHHhcCC
Confidence            22222223334555556677777777777777899999999999999999999999999999988777775

>KOG2678 consensus Predicted membrane protein [Function unknown]

Probab=97.09  E-value=0.092  Score=41.05  Aligned_cols=78  Identities=12%  Similarity=0.131  Sum_probs=66.0

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHhcHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 030656           97 MLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSRRMSRNKWIIGTVVAVLVIAIILILYFKLAK  174 (174)
Q Consensus        97 ~~ete~~g~~~l~~L~~Qre~L~~~~~~~~~i~~~l~~s~~ll~~i~rr~~~dk~il~~ii~~l~~~i~~v~~~k~~~  174 (174)
                      +--...-+.+.-..|....+++..+-..+++-...|+..+.=+.........+++-+..+|++|+.+|..|++.+||+
T Consensus       164 ArslKtnalAfqsalkeDnQvl~~~~k~~D~N~~~L~~~Serve~y~ksk~s~wf~~~miI~v~~sFVsMiliiqifk  241 (244)
T KOG2678|consen  164 ARSLKTNALAFQSALKEDNQVLGAAEKGIDVNSQGLMDVSERVEKYDKSKLSYWFYITMIIFVILSFVSMILIIQIFK  241 (244)
T ss_pred             HHHHHHhHHHHHHHHHhhHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            333445556666788999999999999999999999999999999999988888888888889999999999999885

>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]

Probab=96.93  E-value=0.027  Score=45.29  Aligned_cols=87  Identities=18%  Similarity=0.208  Sum_probs=69.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcHhhhhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 030656           87 TDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTA-MSRRMSRNKWIIGTVVAVLVIAII  165 (174)
Q Consensus        87 ~~~L~~s~r~~~ete~~g~~~l~~L~~Qre~L~~~~~~~~~i~~~l~~s~~ll~~-i~rr~~~dk~il~~ii~~l~~~i~  165 (174)
                      .+.+.+..+-+.|..++=.+.-.-...|-+...++..++..+..++..|++-+.. +.-+..+.||-+|+.+++++++++
T Consensus       194 ~~eI~~l~~gI~Eln~IF~dL~~lV~eQG~lVdrID~Ni~~t~~n~k~A~kEL~kA~~hqrrt~k~~~~~Llil~vv~lf  273 (283)
T COG5325         194 DEEIKNLARGIYELNEIFRDLGSLVGEQGELVDRIDFNIENTSDNLKNANKELEKAPAHQRRTKKCRFYLLLILLVVLLF  273 (283)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhhhhhhHHHHhhHHHHHHhHHHHhhhccchhhHHHHHHHHHHH
Confidence            3456666667777777777777777899999999999999999999999976655 455578889999998888888887


Q ss_pred             HHHHHHhc
Q 030656          166 LILYFKLA  173 (174)
Q Consensus       166 ~v~~~k~~  173 (174)
                      +.+..|.+
T Consensus       274 v~l~~kl~  281 (283)
T COG5325         274 VSLIKKLR  281 (283)
T ss_pred             HHHHHHhc
Confidence            77766654

>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.93  E-value=0.16  Score=41.13  Aligned_cols=90  Identities=13%  Similarity=0.120  Sum_probs=68.8

Q ss_pred             hhchhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcHhhhhhhHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Q 030656           83 VNQSTDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSRR---MSRNKWIIGTVVAV  159 (174)
Q Consensus        83 l~~~~~~L~~s~r~~~ete~~g~~~l~~L~~Qre~L~~~~~~~~~i~~~l~~s~~ll~~i~rr---~~~dk~il~~ii~~  159 (174)
                      ++.-.+.+.+.++-+.|.++|=.+...=.+.|-+.+.++..++..+..++..++.-|+.=.+-   ...-+|++.+|+++
T Consensus       175 ieeR~q~I~~lE~dI~dvN~IFkdL~~lV~eQG~~VDsIe~nve~a~~nveqg~~~L~kA~~yq~~~~k~~~~ll~v~~~  254 (269)
T KOG0811|consen  175 IEEREQAIEQLEADIIDVNEIFKDLGSLVHEQGELVDSIEANVENASVNVEQGTENLRKAAKYQRKARKKKCILLLVGGP  254 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhHHHHH
Confidence            344456777778888888888888888889999999999999999999999999887764433   33334666666666


Q ss_pred             HHHHHHHHHHHHh
Q 030656          160 LVIAIILILYFKL  172 (174)
Q Consensus       160 l~~~i~~v~~~k~  172 (174)
                      +++++++++|+.+
T Consensus       255 v~lii~l~i~~~~  267 (269)
T KOG0811|consen  255 VGLIIGLIIAGIA  267 (269)
T ss_pred             HHHHHHHHHHHhh
Confidence            6677777777643

>KOG3894 consensus SNARE protein Syntaxin 18/UFE1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.79  E-value=0.044  Score=44.87  Aligned_cols=99  Identities=14%  Similarity=0.240  Sum_probs=79.4

Q ss_pred             HHHHHhhhhHHhhc----hhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcHhhhhhhHHHHHHHHHHHHHHHH
Q 030656           72 QRSRLMMSTERVNQ----STDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSRRMS  147 (174)
Q Consensus        72 ~r~~ll~~~~~l~~----~~~~L~~s~r~~~ete~~g~~~l~~L~~Qre~L~~~~~~~~~i~~~l~~s~~ll~~i~rr~~  147 (174)
                      +-+.+-.++.++..    ..+-.....+-+.|...+-.-..+.+..|-..|..+.+...++..++..+|.-|+...+...
T Consensus       212 ~~Q~~E~En~~l~~~~n~~~devrqie~~lvEI~~Lq~ifsehvl~Q~~~Id~I~d~~~~~teNIk~gNe~irka~~~~~  291 (316)
T KOG3894|consen  212 QVQLLETENQRLLNELNELLDEVRQIEKRLVEISALQDIFSEHVLQQDQNIDLIHDLQSGATENIKDGNEEIRKAKRNNG  291 (316)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHHhcc
Confidence            33334444444433    34455566678888888888999999999999999999999999999999999999999988


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 030656          148 RNKWIIGTVVAVLVIAIILILYF  170 (174)
Q Consensus       148 ~dk~il~~ii~~l~~~i~~v~~~  170 (174)
                      ..+..+.+.++||.+++.|+-||
T Consensus       292 ~~r~~~lf~llvlsf~lLFldwy  314 (316)
T KOG3894|consen  292 GLRVFLLFFLLVLSFSLLFLDWY  314 (316)
T ss_pred             cchhHHHHHHHHHHHHHHHHhhc
Confidence            88877777788888888888876

>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.79  E-value=0.0089  Score=41.90  Aligned_cols=67  Identities=19%  Similarity=0.175  Sum_probs=50.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHhcHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030656           96 TMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSRRMSRNKWIIGTVVAVLVIA  163 (174)
Q Consensus        96 ~~~ete~~g~~~l~~L~~Qre~L~~~~~~~~~i~~~l~~s~~ll~~i~rr~~~dk~il~~ii~~l~~~  163 (174)
                      -+--.....-.+..+...|...|.+..+..+.+.+-|+.+=.-++.|.|+ -.-++..|.++++++++
T Consensus        44 kV~aLKsLs~dIg~Ev~~qnklld~mdddfdsts~~L~gtm~r~~~~ar~-sg~~l~~~m~~f~lV~~  110 (118)
T KOG3385|consen   44 KVKALKSLSLDIGDEVRTQNKLLDGMDDDFDSTSGFLSGTMGRLKTMARR-SGISLLCWMAVFSLVAF  110 (118)
T ss_pred             HHHHHHHHHHHhccccchHHHHHHHhccchhhhHHHHHHHHHHHHHHHhc-CCcchHHHHHHHHHHHH
Confidence            33344567777778889999999999999999999999999999999999 33344444444444333

>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.54  E-value=0.059  Score=41.86  Aligned_cols=90  Identities=16%  Similarity=0.298  Sum_probs=54.1

Q ss_pred             HhhhhHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HhcHhhhhhhHHHHHHHHHHHHHH---------
Q 030656           76 LMMSTERVNQSTDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHA-HNTLHGVDDNVSKSKKVLTAMSRR---------  145 (174)
Q Consensus        76 ll~~~~~l~~~~~~L~~s~r~~~ete~~g~~~l~~L~~Qre~L~~~-~~~~~~i~~~l~~s~~ll~~i~rr---------  145 (174)
                      ..+...+|-+++.+|.+|-+.+.+.--++.+|        |+|..- -..++.=...|.+|...++...-.         
T Consensus       116 ~~dQR~rLl~nTerLeRst~rl~ds~Ria~ET--------EqIG~~IL~dL~~QRe~L~rar~rL~~td~~lgkS~kiL~  187 (220)
T KOG1666|consen  116 SADQRARLLQNTERLERSTDRLKDSQRIALET--------EQIGSEILEDLHGQREQLERARERLRETDANLGKSRKILT  187 (220)
T ss_pred             chhHHHHHHhhhHHHHHhHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhHHHHHHH
Confidence            34556778888888888888888888888874        444332 244555555555555555443322         


Q ss_pred             HHHHHHHH--HHHHHHHHHHHHHHHHHHhc
Q 030656          146 MSRNKWII--GTVVAVLVIAIILILYFKLA  173 (174)
Q Consensus       146 ~~~dk~il--~~ii~~l~~~i~~v~~~k~~  173 (174)
                      -++.+++.  |++-+++++.++++++.-|+
T Consensus       188 tM~RR~~~nk~~~~aii~~l~~~il~ilY~  217 (220)
T KOG1666|consen  188 TMTRRLIRNKFTLTAIIALLVLAILLILYS  217 (220)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22334443  55666666666666665554

>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]

Probab=96.42  E-value=0.077  Score=32.85  Aligned_cols=59  Identities=14%  Similarity=0.251  Sum_probs=53.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcHhhhhhhHHHHHHHHHHHHHHH
Q 030656           88 DRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSRRM  146 (174)
Q Consensus        88 ~~L~~s~r~~~ete~~g~~~l~~L~~Qre~L~~~~~~~~~i~~~l~~s~~ll~~i~rr~  146 (174)
                      ..|+.....+.+..+++.++-..+..|.+.|.++..++..+...+..++.-+....+..
T Consensus         4 ~~l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~ka~~~~   62 (63)
T PF05739_consen    4 EELDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANENLKKGNKKLKKALKYQ   62 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            45777788889999999999999999999999999999999999999999888877653

Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....

>PRK10884 SH3 domain-containing protein; Provisional

Probab=96.06  E-value=0.35  Score=37.64  Aligned_cols=68  Identities=21%  Similarity=0.231  Sum_probs=42.9

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHhcHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030656           98 LETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSRRMSRNKWIIGTVVAVLVIAIILIL  168 (174)
Q Consensus        98 ~ete~~g~~~l~~L~~Qre~L~~~~~~~~~i~~~l~~s~~ll~~i~rr~~~dk~il~~ii~~l~~~i~~v~  168 (174)
                      .+..+.......+|..+.+.|   ...+......+...+.-+....+....+.|+-+++++++.+++++|+
T Consensus       124 ~~~~~~~~~~~~~L~~~n~~L---~~~l~~~~~~~~~l~~~~~~~~~~~~~~wf~~Gg~v~~~GlllGlil  191 (206)
T PRK10884        124 QQKVAQSDSVINGLKEENQKL---KNQLIVAQKKVDAANLQLDDKQRTIIMQWFMYGGGVAGIGLLLGLLL  191 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHh
Confidence            333334444455566666666   44555566667777777777777777776666666666666666664

>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent

Probab=95.48  E-value=0.17  Score=30.52  Aligned_cols=54  Identities=15%  Similarity=0.246  Sum_probs=48.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcHhhhhhhHHHHHHHHH
Q 030656           87 TDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLT  140 (174)
Q Consensus        87 ~~~L~~s~r~~~ete~~g~~~l~~L~~Qre~L~~~~~~~~~i~~~l~~s~~ll~  140 (174)
                      ...|......+.+..+++..+-..+..|.+.|.++...+..+...+..+.+-+.
T Consensus         5 ~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~~~~~~~~~~~~~~l~   58 (60)
T cd00193           5 DEELEQLEASIGELKQIFLDLGTEVEEQGELLDRIEDNVDNADVNVKRANKRLK   58 (60)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            345677788888999999999999999999999999999999999999887664

>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea

Probab=93.86  E-value=0.99  Score=28.78  Aligned_cols=57  Identities=18%  Similarity=0.285  Sum_probs=39.7

Q ss_pred             HHHHHHhcHhhhhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030656          117 SLLHAHNTLHGVDDNVSKSK-KVLTAMSRRMSRNKWIIGTVVAVLVIAIILILYFKLA  173 (174)
Q Consensus       117 ~L~~~~~~~~~i~~~l~~s~-~ll~~i~rr~~~dk~il~~ii~~l~~~i~~v~~~k~~  173 (174)
                      ....+..++++++..+.-.+ .+-.++.++.=+|==|+|++++=+++++++++..++|
T Consensus        13 ~~~~i~~rLd~iEeKvEf~~~Ei~Qr~GkkiGRDiGIlYG~v~Glii~~~~~~l~~~~   70 (70)
T PF04210_consen   13 DFNEIMKRLDEIEEKVEFTNAEIAQRAGKKIGRDIGILYGLVIGLIIFIIYIVLSSMF   70 (70)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            44556667777777776666 4567888888899999998776666666666555543

This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane

>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.52  E-value=1.9  Score=30.47  Aligned_cols=48  Identities=10%  Similarity=0.175  Sum_probs=19.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHhcHhhhhhhHHHHHHHHHHHH
Q 030656           96 TMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMS  143 (174)
Q Consensus        96 ~~~ete~~g~~~l~~L~~Qre~L~~~~~~~~~i~~~l~~s~~ll~~i~  143 (174)
                      -+..|.++-.++-.=+..-=+++-.-..++.++++..+.-..--..+.
T Consensus        30 k~~~tq~QvdeVv~IMr~NV~KVlER~ekL~~L~drad~L~~~as~F~   77 (116)
T KOG0860|consen   30 KLQQTQAQVDEVVDIMRENVEKVLERGEKLDELDDRADQLQAGASQFE   77 (116)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444443333333334444444443333333333333

>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional

Probab=93.36  E-value=1.3  Score=28.80  Aligned_cols=56  Identities=14%  Similarity=0.352  Sum_probs=39.5

Q ss_pred             HHHHHHhcHhhhhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030656          117 SLLHAHNTLHGVDDNVSKSK-KVLTAMSRRMSRNKWIIGTVVAVLVIAIILILYFKL  172 (174)
Q Consensus       117 ~L~~~~~~~~~i~~~l~~s~-~ll~~i~rr~~~dk~il~~ii~~l~~~i~~v~~~k~  172 (174)
                      -...+.+++++++..+.-++ .+-.++.++.=+|==|+|++++=++++++++.+..+
T Consensus        16 d~~~i~~rLD~iEeKVEftn~Ei~Qr~GkkvGRDiGIlYG~viGlli~~i~~~~~~~   72 (77)
T PRK01026         16 DFKEIQKRLDEIEEKVEFTNAEIFQRIGKKVGRDIGILYGLVIGLLIVLVYIILSPI   72 (77)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35566777777777777777 455778888888988998866665555555555544

>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis

Probab=93.36  E-value=1.5  Score=29.03  Aligned_cols=56  Identities=21%  Similarity=0.349  Sum_probs=39.9

Q ss_pred             HHHHHHHhHHHHHHHHhcHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030656          107 ILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSRRMSRNKWIIGTVVAVLVIAIILIL  168 (174)
Q Consensus       107 ~l~~L~~Qre~L~~~~~~~~~i~~~l~~s~~ll~~i~rr~~~dk~il~~ii~~l~~~i~~v~  168 (174)
                      -+++|..+.+.|...-....      ..|.++=+.|--+.++-.++++++++++++++++++
T Consensus        32 ~L~~L~~kt~~L~~~a~~F~------k~a~~l~r~~~~~~~k~~~i~~~iv~~~~~~i~~~~   87 (89)
T PF00957_consen   32 KLEELEDKTEELSDNAKQFK------KNAKKLKRKMWWRNYKLYIIIIIIVIIIILIIIIVI   87 (89)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHHHHHhHHHH------HHHHHHHHHHHHHHHHHHHhHHhhhhhhhhHHHHHH
Confidence            35666666666665555444      356666677888888999998888888887777764

Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....

>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown

Probab=92.56  E-value=0.47  Score=29.43  Aligned_cols=33  Identities=12%  Similarity=0.345  Sum_probs=20.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030656          137 KVLTAMSRRMSRNKWIIGTVVAVLVIAIILILY  169 (174)
Q Consensus       137 ~ll~~i~rr~~~dk~il~~ii~~l~~~i~~v~~  169 (174)
                      .....-.+|+.+-++|++++++++++++++..|
T Consensus        26 ~~~~k~qk~~~~~~~i~~~~~i~~l~v~~~~~~   58 (59)
T PF09889_consen   26 EEYRKRQKRMRKTQYIFFGIFILFLAVWIFMTF   58 (59)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            344455566677777877777665555544433

They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.

>TIGR01149 mtrG N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit G

Probab=92.46  E-value=1.8  Score=27.56  Aligned_cols=55  Identities=18%  Similarity=0.310  Sum_probs=37.4

Q ss_pred             HHHHHhcHhhhhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030656          118 LLHAHNTLHGVDDNVSKSK-KVLTAMSRRMSRNKWIIGTVVAVLVIAIILILYFKL  172 (174)
Q Consensus       118 L~~~~~~~~~i~~~l~~s~-~ll~~i~rr~~~dk~il~~ii~~l~~~i~~v~~~k~  172 (174)
                      ...+.+++++++..+.-.+ .+-.+..++.=+|==|+|++++=+++++++.+.+.+
T Consensus        14 ~~~i~~rLd~iEeKVEf~~~E~~Qr~Gkk~GRDiGIlYG~viGlli~~~~~~l~~~   69 (70)
T TIGR01149        14 FNEVMKRLDEIEEKVEFVNGEVAQRIGKKVGRDIGILYGLVIGLILFLIYILLSSM   69 (70)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            4556667777777777666 456778888888888998866655555555555544

coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.

>COG4064 MtrG Tetrahydromethanopterin S-methyltransferase, subunit G [Coenzyme metabolism]

Probab=91.99  E-value=2  Score=27.39  Aligned_cols=52  Identities=21%  Similarity=0.350  Sum_probs=29.9

Q ss_pred             HHhcHhhhhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030656          121 AHNTLHGVDDNVSKSK-KVLTAMSRRMSRNKWIIGTVVAVLVIAIILILYFKL  172 (174)
Q Consensus       121 ~~~~~~~i~~~l~~s~-~ll~~i~rr~~~dk~il~~ii~~l~~~i~~v~~~k~  172 (174)
                      ++.+++++...+.-.+ .+-.++.++.=+|-=|+|++++=++++.++++..+.
T Consensus        20 ~~kRLdeieekvef~~~Ev~Qr~GkkiGRDIGILYGlVIGlil~~i~~~l~~~   72 (75)
T COG4064          20 IHKRLDEIEEKVEFVNGEVYQRIGKKIGRDIGILYGLVIGLILCMIYILLGVA   72 (75)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444 345678888889988998855444444444444343

>PF14362 DUF4407: Domain of unknown function (DUF4407)

Probab=89.80  E-value=9.7  Score=31.04  Aligned_cols=24  Identities=17%  Similarity=0.163  Sum_probs=16.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhc
Q 030656          150 KWIIGTVVAVLVIAIILILYFKLA  173 (174)
Q Consensus       150 k~il~~ii~~l~~~i~~v~~~k~~  173 (174)
                      .+.-++++++++++=++.+++|++
T Consensus       262 ~~~~~~i~llfi~iel~Pv~~Kl~  285 (301)
T PF14362_consen  262 LLASLFIFLLFIAIELLPVLFKLL  285 (301)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh
Confidence            344466777777777788888875

>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]

Probab=88.55  E-value=1.6  Score=33.77  Aligned_cols=84  Identities=8%  Similarity=0.122  Sum_probs=63.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030656           87 TDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSRRMSRNKWIIGTVVAVLVIAIIL  166 (174)
Q Consensus        87 ~~~L~~s~r~~~ete~~g~~~l~~L~~Qre~L~~~~~~~~~i~~~l~~s~~ll~~i~rr~~~dk~il~~ii~~l~~~i~~  166 (174)
                      -+.|...+..+.|..++..+-.+...+--|.|+=--++...+.++-..=++.-+.+.|.++-.-+=+.++++++++++++
T Consensus       124 id~lskvkaqv~evk~vM~eNIekvldRGekiELLVdKTenl~~~s~~fr~q~r~~~r~mw~~n~kl~~iv~~~~~~~iy  203 (217)
T KOG0859|consen  124 ISKLAKVKAQVTEVKGVMMENIEKVLDRGEKIELLVDKTENLRSKSFDFRTQGRKLRRKMWFQNMKLKLIVLGVSISLIY  203 (217)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhccCeEEeeechhhhhhhhhHHHHHHHHHHHHHHHHhccceehhhhhHHHHHHH
Confidence            45677888899999999999888888888888877788888888877777777888888777655555555555555555


Q ss_pred             HHHH
Q 030656          167 ILYF  170 (174)
Q Consensus       167 v~~~  170 (174)
                      |++.
T Consensus       204 iiv~  207 (217)
T KOG0859|consen  204 IIVA  207 (217)
T ss_pred             HHHH
Confidence            5554

>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown

Probab=88.54  E-value=2.1  Score=26.55  Aligned_cols=33  Identities=6%  Similarity=0.218  Sum_probs=26.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030656          141 AMSRRMSRNKWIIGTVVAVLVIAIILILYFKLA  173 (174)
Q Consensus       141 ~i~rr~~~dk~il~~ii~~l~~~i~~v~~~k~~  173 (174)
                      ...++..+.+-..++.++++++++++++|..||
T Consensus        27 ~~~k~qk~~~~~~~i~~~~~i~~l~v~~~~~~~   59 (59)
T PF09889_consen   27 EYRKRQKRMRKTQYIFFGIFILFLAVWIFMTFF   59 (59)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            455666677778899999998889999988875

They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.

>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C

Probab=87.49  E-value=0.87  Score=27.39  Aligned_cols=31  Identities=23%  Similarity=0.411  Sum_probs=22.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030656          138 VLTAMSRRMSRNKWIIGTVVAVLVIAIILIL  168 (174)
Q Consensus       138 ll~~i~rr~~~dk~il~~ii~~l~~~i~~v~  168 (174)
                      ..+.+-+|..+||.-+++.+++++++++.++
T Consensus         4 ~~~~~~~~f~~nk~a~~gl~il~~~vl~ai~   34 (56)
T PF12911_consen    4 PWKDAWRRFRRNKLAVIGLIILLILVLLAIF   34 (56)
T ss_pred             HHHHHHHHHHhCchHHHHHHHHHHHHHHHHH
Confidence            4567888999999988887777655554443

>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C

Probab=86.94  E-value=5.4  Score=24.71  Aligned_cols=62  Identities=16%  Similarity=0.130  Sum_probs=48.4

Q ss_pred             HHhhhhHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcHhhhhhhHHHHH
Q 030656           75 RLMMSTERVNQSTDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSK  136 (174)
Q Consensus        75 ~ll~~~~~l~~~~~~L~~s~r~~~ete~~g~~~l~~L~~Qre~L~~~~~~~~~i~~~l~~s~  136 (174)
                      +++++++.+.++...++++..++.+|..-=..=.+.|..=+..+..+...+......+....
T Consensus         2 ~l~~e~~~L~~s~~~~~e~~~~g~~~l~~L~~Qre~L~~~~~kl~~i~~~l~~s~~~l~~I~   63 (66)
T PF12352_consen    2 RLLRESDSLQRSHRMADETEEIGAATLEDLRSQREQLKRVRDKLDDIDSNLPKSNSLLKRIS   63 (66)
T ss_dssp             HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            56677777888888888888888888766666677888888888888888888887776654

>KOG3208 consensus SNARE protein GS28 [Intracellular trafficking, secretion, and vesicular transport]

Probab=86.80  E-value=14  Score=29.15  Aligned_cols=57  Identities=16%  Similarity=0.112  Sum_probs=36.5

Q ss_pred             hHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcHhhhhhhHHHHH
Q 030656           80 TERVNQSTDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSK  136 (174)
Q Consensus        80 ~~~l~~~~~~L~~s~r~~~ete~~g~~~l~~L~~Qre~L~~~~~~~~~i~~~l~~s~  136 (174)
                      +..+++....+++....|.+|-+.-..=...|.+=..++.++-.+..-|.+-+...+
T Consensus       148 ~~~in~s~~~vde~Is~A~aTre~l~~Qrs~l~~i~~k~~~~a~r~P~IN~Ll~kIk  204 (231)
T KOG3208|consen  148 HDHINNSIRLVDELISQAQATRENLHSQRSVLGGINNKVNNIANRFPAINQLLQKIK  204 (231)
T ss_pred             hccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcchHHHHHHHHH
Confidence            344555666666666666666666555566666666677777777776666666554

>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport]

Probab=86.41  E-value=5.6  Score=32.35  Aligned_cols=59  Identities=12%  Similarity=0.226  Sum_probs=52.4

Q ss_pred             hchhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcHhhhhhhHHHHHHHHHHH
Q 030656           84 NQSTDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAM  142 (174)
Q Consensus        84 ~~~~~~L~~s~r~~~ete~~g~~~l~~L~~Qre~L~~~~~~~~~i~~~l~~s~~ll~~i  142 (174)
                      ++....|++...++.....+|.++-.+|..|.+.|.++..+++..+..+..+++=++.+
T Consensus       214 deiD~NL~qis~~lg~LK~mA~dmg~Eie~Qn~~Ld~I~~k~d~~d~~v~~~n~R~~kL  272 (273)
T KOG3065|consen  214 DEIDENLDQLSAILGRLKNMALDMGSEIESQNERLDRIEDKVDRLDLRVDKANKRAKKL  272 (273)
T ss_pred             hHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHhhhhHHHHHHHHHHhc
Confidence            34566788888899999999999999999999999999999999999999998876653

>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport

Probab=85.08  E-value=18  Score=28.85  Aligned_cols=46  Identities=15%  Similarity=0.157  Sum_probs=25.5

Q ss_pred             HHHHHHHhcHhhhhhhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Q 030656          116 QSLLHAHNTLHGVDDNVSKSKKVLTAMSRRMSRN--KWIIGTVVAVLV  161 (174)
Q Consensus       116 e~L~~~~~~~~~i~~~l~~s~~ll~~i~rr~~~d--k~il~~ii~~l~  161 (174)
                      ..|+.-..-+..+...++..-.-++.-+.|.-..  +..-|++.++++
T Consensus       188 ~~l~~D~~~L~~~~~~~d~n~~~l~~~~~rl~~~~~~~~~~~~~~~i~  235 (251)
T PF09753_consen  188 QILKEDNKVLDRTEEGLDRNLSSLKRESKRLKEHSSKSWGCWTWLMIF  235 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence            3444445556666666666666666666664333  444454554443

They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].

>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins

Probab=84.74  E-value=0.5  Score=32.54  Aligned_cols=25  Identities=20%  Similarity=0.408  Sum_probs=17.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 030656          147 SRNKWIIGTVVAVLVIAIILILYFK  171 (174)
Q Consensus       147 ~~dk~il~~ii~~l~~~i~~v~~~k  171 (174)
                      ..+-++++++.++|++++++++||.
T Consensus        60 ~~~iili~lls~v~IlVily~IyYF   84 (101)
T PF06024_consen   60 NGNIILISLLSFVCILVILYAIYYF   84 (101)
T ss_pred             cccchHHHHHHHHHHHHHHhhheEE
Confidence            3455666777777777777777764

>PHA03240 envelope glycoprotein M; Provisional

Probab=84.49  E-value=1.1  Score=35.06  Aligned_cols=21  Identities=29%  Similarity=0.781  Sum_probs=13.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHh
Q 030656          152 IIGTVVAVLVIAIILILYFKL  172 (174)
Q Consensus       152 il~~ii~~l~~~i~~v~~~k~  172 (174)
                      ..|++|++++++|++++|+||
T Consensus       213 ~~WIiilIIiIiIIIL~cfKi  233 (258)
T PHA03240        213 IAWIFIAIIIIIVIILFFFKI  233 (258)
T ss_pred             HhHHHHHHHHHHHHHHHHHhc
Confidence            455666666666666667665

>PHA02650 hypothetical protein; Provisional

Probab=84.42  E-value=2.1  Score=28.04  Aligned_cols=24  Identities=17%  Similarity=0.275  Sum_probs=15.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcC
Q 030656          151 WIIGTVVAVLVIAIILILYFKLAK  174 (174)
Q Consensus       151 ~il~~ii~~l~~~i~~v~~~k~~~  174 (174)
                      +++.++++++++++++++|+|..+
T Consensus        51 ~~ii~i~~v~i~~l~~flYLK~~~   74 (81)
T PHA02650         51 NFIFLIFSLIIVALFSFFVFKGYT   74 (81)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhc
Confidence            334446666667777888888653

>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function

Probab=84.28  E-value=19  Score=28.49  Aligned_cols=29  Identities=14%  Similarity=0.158  Sum_probs=21.8

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHhcHhh
Q 030656           99 ETEELGVSILQDLSSQRQSLLHAHNTLHG  127 (174)
Q Consensus        99 ete~~g~~~l~~L~~Qre~L~~~~~~~~~  127 (174)
                      +|+++...+..++..+|+-+++...++.+
T Consensus       110 ~tde~k~~~~~ei~k~r~e~~~ml~evK~  138 (230)
T PF03904_consen  110 DTDELKNIAQNEIKKVREENKSMLQEVKQ  138 (230)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56778888888888888777777666554

>PF00523 Fusion_gly: Fusion glycoprotein F0; InterPro: IPR000776 The fusion glycoproteins from this family are found in ssRNA negative-strand viruses

Probab=83.95  E-value=0.61  Score=40.95  Aligned_cols=31  Identities=26%  Similarity=0.414  Sum_probs=11.1

Q ss_pred             HHHHhcHhhhhhhHHHHHHHHHHHHHHHHHH
Q 030656          119 LHAHNTLHGVDDNVSKSKKVLTAMSRRMSRN  149 (174)
Q Consensus       119 ~~~~~~~~~i~~~l~~s~~ll~~i~rr~~~d  149 (174)
                      .++...+.+..+-+++|++++..++......
T Consensus       441 ~~vn~sL~~A~~~L~~Sn~iL~~v~~~~~~~  471 (490)
T PF00523_consen  441 GQVNNSLNNAKDLLDKSNQILDSVNPGISSN  471 (490)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTTT------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccccch
Confidence            3344444444444444444444444433333

This protein directs fusion of viral and cellular membranes, resulting in viral penetration, and can direct fusion of infected cells with adjoining cells, resulting in the formation of syncytia. The mature form is a dimer of polypeptides F1 and F2 linked by a disulphide bond [].; GO: 0006948 induction by virus of host cell-cell fusion; PDB: 2FYZ_D 3MAW_B 4DAG_A 1G5G_D 1SVF_A 2B9B_A 1G2C_M 3RRT_A 3RRR_D 3RKI_A ....

>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins

Probab=82.32  E-value=19  Score=27.11  Aligned_cols=39  Identities=10%  Similarity=0.227  Sum_probs=17.4

Q ss_pred             HHHHHHHHHHHHHHHHHhH----HHHHHHHhcHhhhhhhHHHH
Q 030656           97 MLETEELGVSILQDLSSQR----QSLLHAHNTLHGVDDNVSKS  135 (174)
Q Consensus        97 ~~ete~~g~~~l~~L~~Qr----e~L~~~~~~~~~i~~~l~~s  135 (174)
                      -+|...+-.++..++...+    +-......++.+++..++.-
T Consensus        97 ~~ei~~l~a~~klD~n~eK~~~r~e~~~~~~ki~e~~~ki~~e  139 (177)
T PF07798_consen   97 REEINKLRAEVKLDLNLEKGRIREEQAKQELKIQELNNKIDTE  139 (177)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444454444444322    33344444555555444433

>PF05283 MGC-24: Multi-glycosylated core protein 24 (MGC-24); InterPro: IPR007947 CD164 is a mucin-like receptor, or sialomucin, with specificity in receptor/ ligand interactions that depends on the structural characteristics of the mucin-like receptor

Probab=81.85  E-value=1.6  Score=33.48  Aligned_cols=26  Identities=35%  Similarity=0.456  Sum_probs=12.2

Q ss_pred             HHHHHHHH-HHHHH-HHHHHHHHHHHhcC
Q 030656          148 RNKWIIGT-VVAVL-VIAIILILYFKLAK  174 (174)
Q Consensus       148 ~dk~il~~-ii~~l-~~~i~~v~~~k~~~  174 (174)
                      .|-.-|++ ||++| +++|+|++ |||+|
T Consensus       158 FD~~SFiGGIVL~LGv~aI~ff~-~KF~k  185 (186)
T PF05283_consen  158 FDAASFIGGIVLTLGVLAIIFFL-YKFCK  185 (186)
T ss_pred             CchhhhhhHHHHHHHHHHHHHHH-hhhcc
Confidence            44433333 33333 44444444 48876

Its functions include mediating, or regulating, haematopoietic progenitor cell adhesion and the negative regulation of their growth and/or-differentiation. It exists in the native state as a disulphide- linked homodimer of two 80-85kDa subunits. It is usually expressed by CD34+ and CD341o/- haematopoietic stem cells and associated microenvironmental cells. It contains, in its extracellular region, two mucin domains (I and II) linked by a non-mucin domain, which has been predicted to contain intra- disulphide bridges. This receptor may play a key role in haematopoiesis by facilitating the adhesion of human CD34+ cells to bone marrow stroma and by negatively regulating CD34+ CD341o/- haematopoietic progenitor cell proliferation. These effects involve the CD164 class I and/or II epitopes recognised by the monoclonal antibodies (mAbs) 105A5 and 103B2/9E10. These epitopes are carbohydrate-dependent and are located on the N-terminal mucin domain I [, ]. It has been found that murine MGC-24v and rat endolyn share significant sequence similarities with human CD164. However, CD164 lacks the consensus glycosaminoglycan (GAG)-attachment site found in MGC-24; it is possible that GAG-association is responsible for the high molecular weight of the epithelial-derived MGC-24 glycoprotein []. Genomic structure studies have placed CD164 within the mucin-subgroup that comprises multiple exons, and demonstrate the diverse chromosomal distribution of this family of molecules. Molecules with such multiple exons may have sophisticated regulatory mechanisms that involve not only post-translational modifications of the oligosaccharide side chains, but also differential exon usage. Although differences in the intron and exon sizes are seen between the mouse and human genes, the predicted proteins are similar in size and structure, maintaining functionally important motifs that regulate cell proliferation or subcellular distribution []. CD164 is a gene whose expression depends on differential usage of poly- adenylation sites within the 3'-UTR. The conserved distribution of the 3.2- and 1.2-kb CD164 transcripts between mouse and human suggests that (i) a mechanism may exist to regulate tissue-specific polyadenylation, and (ii) differences in polyadenylation are important for the expression and function of CD164 in different tissues. Two other aspects of the structure of CD164 are of particular interest. First, it shares one of several conserved features of a cytokine-binding pocket - in this respect, it is notable that evidence exists for a class of cell-surface sialomucin modulators that directly interact with growth factor receptors to regulate their response to physiological ligands. Second, its cytoplasmic tail contains a C-terminal YHTL motif found in many endocytic membrane proteins or receptors. These Tyr-based motifs bind to adaptor proteins, which mediate the sorting of membrane proteins into transport vesicles from the plasma membrane to the endosomes, and between intracellular compartments.

>PF12669 P12: Virus attachment protein p12 family

Probab=81.70  E-value=1  Score=27.82  Aligned_cols=8  Identities=13%  Similarity=0.102  Sum_probs=3.6

Q ss_pred             HHHHHHhc
Q 030656          166 LILYFKLA  173 (174)
Q Consensus       166 ~v~~~k~~  173 (174)
                      +++|++++
T Consensus        14 ~v~~r~~~   21 (58)
T PF12669_consen   14 YVAIRKFI   21 (58)
T ss_pred             HHHHHHHH
Confidence            33444554

>KOG0862 consensus Synaptobrevin/VAMP-like protein SEC22 [Intracellular trafficking, secretion, and vesicular transport]

Probab=81.03  E-value=25  Score=27.60  Aligned_cols=65  Identities=12%  Similarity=0.170  Sum_probs=46.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 030656           88 DRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSRRMSRNKWI  152 (174)
Q Consensus        88 ~~L~~s~r~~~ete~~g~~~l~~L~~Qre~L~~~~~~~~~i~~~l~~s~~ll~~i~rr~~~dk~i  152 (174)
                      ..+..-...+.++..+....++++..-.+.|..-...-......-..-.+..+.|+++..-+++-
T Consensus       134 ~n~~~~n~el~~v~~im~~niedvl~rg~~l~~l~~~~s~l~~~s~~y~~~a~~in~~sl~~~~a  198 (216)
T KOG0862|consen  134 RNLLKLNQELQDVQRIMVENLEDVLQRGEVLNALSSMASELSSESRKYPKTAKGINRKSLIRKYA  198 (216)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHhhchHHHhhhhhhhcccHHHHhhHHHHHHHHHHHHHHHHH
Confidence            55556666777788888888888887777777666666666555556667777788877777665

>PHA02819 hypothetical protein; Provisional

Probab=80.79  E-value=3.6  Score=26.31  Aligned_cols=24  Identities=29%  Similarity=0.686  Sum_probs=15.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcC
Q 030656          151 WIIGTVVAVLVIAIILILYFKLAK  174 (174)
Q Consensus       151 ~il~~ii~~l~~~i~~v~~~k~~~  174 (174)
                      +++.++++++++++++.+|+|..|
T Consensus        48 ~~ii~l~~~~~~~~~~flYLK~~~   71 (71)
T PHA02819         48 YLIIGLVTIVFVIIFIIFYLKVIK   71 (71)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcC
Confidence            333445555666777778888654

>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase

Probab=80.76  E-value=2.2  Score=24.28  Aligned_cols=21  Identities=24%  Similarity=0.167  Sum_probs=13.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHhc
Q 030656          153 IGTVVAVLVIAIILILYFKLA  173 (174)
Q Consensus       153 l~~ii~~l~~~i~~v~~~k~~  173 (174)
                      ++++.++.+.++..++|.||.
T Consensus        14 F~lVglv~i~iva~~iYRKw~   34 (43)
T PF08114_consen   14 FCLVGLVGIGIVALFIYRKWQ   34 (43)
T ss_pred             hHHHHHHHHHHHHHHHHHHHH
Confidence            344444555666777888873

Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].

>PHA03164 hypothetical protein; Provisional

Probab=80.57  E-value=2.4  Score=27.59  Aligned_cols=27  Identities=22%  Similarity=0.483  Sum_probs=17.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030656          144 RRMSRNKWIIGTVVAVLVIAIILILYF  170 (174)
Q Consensus       144 rr~~~dk~il~~ii~~l~~~i~~v~~~  170 (174)
                      ||...--+++.+.++-++++|+||+|.
T Consensus        54 rRktftFlvLtgLaIamILfiifvlyv   80 (88)
T PHA03164         54 RRKTFTFLVLTGLAIAMILFIIFVLYV   80 (88)
T ss_pred             hhheeehHHHHHHHHHHHHHHHHHHHh
Confidence            344455566766666677777777774

>PHA02844 putative transmembrane protein; Provisional

Probab=80.23  E-value=3.2  Score=26.81  Aligned_cols=21  Identities=24%  Similarity=0.412  Sum_probs=13.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhcC
Q 030656          154 GTVVAVLVIAIILILYFKLAK  174 (174)
Q Consensus       154 ~~ii~~l~~~i~~v~~~k~~~  174 (174)
                      .++++++++++++.+|+|..+
T Consensus        53 i~i~~v~~~~~~~flYLK~~~   73 (75)
T PHA02844         53 LTIIFVVFATFLTFLYLKAVP   73 (75)
T ss_pred             HHHHHHHHHHHHHHHHHheec
Confidence            445555566667777887653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	174
2nps_C	81	Vesicle transport through interaction with T- snar	5e-28
1gl2_C	65	VTI1B, vesicle transport V-snare protein VTI1-like	2e-21
1vcs_A	102	Vesicle transport through interaction with T- snar	7e-09
2qyw_A	102	Vesicle transport through interaction with T-SNAR	2e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-05

>2nps_C Vesicle transport through interaction with T- snares homolog 1A; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus} Length = 81

 Score = 99.1 bits (247), Expect = 5e-28
 Identities = 27/81 (33%), Positives = 50/81 (61%)

Query: 70  ADQRSRLMMSTERVNQSTDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVD 129
              R+ L+ +TER+ +S+ R++   +  +ETE++G  +L++LS  R+ +  A   L   D
Sbjct: 1   GSMRAHLLDNTERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDRERIQRARERLRETD 60

Query: 130 DNVSKSKKVLTAMSRRMSRNK 150
            N+ KS ++LT M RR+ +N+
Sbjct: 61  ANLGKSSRILTGMLRRIIQNR 81

>1gl2_C VTI1B, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1 Length = 65

 Score = 81.4 bits (201), Expect = 2e-21
 Identities = 23/63 (36%), Positives = 40/63 (63%)

Query: 82  RVNQSTDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTA 141
            +N++T  I+ S R   ET+++G  I+++L  QR  L    + L   ++N+SKS+K+L +
Sbjct: 3   HMNRATQSIERSHRIATETDQIGTEIIEELGEQRDQLERTKSRLVNTNENLSKSRKILRS 62

Query: 142 MSR 144
           MSR
Sbjct: 63  MSR 65

>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1 Length = 102

 Score = 50.0 bits (119), Expect = 7e-09
 Identities = 12/49 (24%), Positives = 27/49 (55%)

Query: 5   IRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRLVSGNLNAAA 53
           + +MDLE R + P  + +   ++R YK ++  L+++ KR    +  ++ 
Sbjct: 54  LEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLETDFKRSRIASGPSSG 102

>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V Length = 102

 Score = 45.8 bits (108), Expect = 2e-07
 Identities = 12/38 (31%), Positives = 21/38 (55%)

Query: 5   IRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVK 42
           + +M+ E R      +  +++KLR Y+ DL  L  EV+
Sbjct: 65  LAEMEEELRYAPLTFRNPMMSKLRNYRKDLAKLHREVR 102

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.2 bits (106), Expect = 4e-06
 Identities = 31/177 (17%), Positives = 61/177 (34%), Gaps = 34/177 (19%)

Query: 8   MDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRLVSGNLNAAARDELLESGMADALT 67
           MD E    Q   K +L      +  + +    +V+ +    L+    D ++ S       
Sbjct: 7   MDFETGEHQYQYKDILSVFEDAFVDNFDC--KDVQDMPKSILSKEEIDHIIMSK------ 58

Query: 68  ASADQRSRLMMSTERVNQST--DR-IKDSRR-------TMLETEELGVSILQDL-SSQRQ 116
             A   +  +  T    Q     + +++  R       + ++TE+   S++  +   QR 
Sbjct: 59  -DAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD 117

Query: 117 SLLHAHNTLHGVDD-NVSKSKKV--LTAMSRRMSRNKWII--G------TVVAVLVI 162
            L   +N        NVS+ +    L      +   K ++  G      T VA+ V 
Sbjct: 118 RL---YNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVC 171

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.1 bits (98), Expect = 4e-05
 Identities = 21/155 (13%), Positives = 54/155 (34%), Gaps = 31/155 (20%)

Query: 5   IRKMDL--EARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRLVSGNLNAAARDELLESGM 62
            R  DL  E  +  P   +++   +R+  +  +N K         ++N      ++ES +
Sbjct: 313 CRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWK---------HVNCDKLTTIIESSL 363

Query: 63  ADALTASADQRSR---LMMSTERVNQSTDRIKDSRRTML---ETEELGVSILQDLSSQRQ 116
            + L   A+ R     L +     +     I     +++     +   + ++  L   + 
Sbjct: 364 -NVLE-PAEYRKMFDRLSVFPPSAH-----IPTILLSLIWFDVIKSDVMVVVNKL--HKY 414

Query: 117 SLLHAHN-----TLHGVDDNVSKSKKVLTAMSRRM 146
           SL+         ++  +   +    +   A+ R +
Sbjct: 415 SLVEKQPKESTISIPSIYLELKVKLENEYALHRSI 449

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	174
2nps_C	81	Vesicle transport through interaction with T- snar	99.83
1gl2_C	65	VTI1B, vesicle transport V-snare protein VTI1-like	99.65
1n7s_C	79	SNAP-25A; neuronal snare protein complex, four hel	99.4
1nhl_A	54	Synaptosomal-associated protein 23; snare, coiled-	99.13
1vcs_A	102	Vesicle transport through interaction with T- snar	98.88
2qyw_A	102	Vesicle transport through interaction with T-SNAR	98.75
3onj_A	97	T-snare VTI1; helix, HABC, protein transport; 1.92	98.74
3b5n_C	70	Protein transport protein SEC9; snare complex, syn	98.72
1l4a_C	83	S-SNAP25 fusion protein; snare, snare complex, mem	98.57
3hd7_B	109	Syntaxin-1A; membrane protein, coiled-coil, 4-heli	98.05
3hd7_A	91	Vesicle-associated membrane protein 2; membrane pr	98.0
2kog_A	119	Vesicle-associated membrane protein 2; synaptobrev	96.94
3hd7_A	91	Vesicle-associated membrane protein 2; membrane pr	96.45
2nps_D	82	Syntaxin-6; vesicle fusion, snare complex, early e	96.38
1gl2_D	65	Syntaxin 8, vesicle transport V-snare protein VTI1	96.23
3b5n_D	64	Protein transport protein SEC9; snare complex, syn	95.89
1sfc_D	87	Protein (SNAP-25B), protein (synaptobrevin 2); mem	95.67
1n7s_D	66	SNAP-25A; neuronal snare protein complex, four hel	95.44
1l4a_D	87	S-SNAP25 fusion protein; snare, snare complex, mem	94.72
1jth_B	77	Syntaxin 1A; coiled-coil, polar layer, endocytosis	82.5
2kog_A	119	Vesicle-associated membrane protein 2; synaptobrev	80.15

>2nps_C Vesicle transport through interaction with T- snares homolog 1A; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}

Probab=99.83  E-value=9.3e-21  Score=125.17  Aligned_cols=80  Identities=34%  Similarity=0.581  Sum_probs=76.3

Q ss_pred             HHHHHHhhhhHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcHhhhhhhHHHHHHHHHHHHHHHHHHH
Q 030656           71 DQRSRLMMSTERVNQSTDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSRRMSRNK  150 (174)
Q Consensus        71 ~~r~~ll~~~~~l~~~~~~L~~s~r~~~ete~~g~~~l~~L~~Qre~L~~~~~~~~~i~~~l~~s~~ll~~i~rr~~~dk  150 (174)
                      ++|++|+++++++++++++|.+|.+++.|||++|.+|+++|+.|||+|.++++++++++++++.|.++|+.|.||+++||
T Consensus         2 ~qR~~Ll~~t~~L~rt~~~L~~s~r~~~ETE~iG~~il~~L~~QRE~l~~~~~~l~~~d~~l~~s~k~l~~M~rr~~~nK   81 (81)
T 2nps_C            2 SMRAHLLDNTERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDRERIQRARERLRETDANLGKSSRILTGMLRRIIQNR   81 (81)
T ss_dssp             TTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred             cHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhCC
Confidence            37889999999999999999999999999999999999999999999999999999999999999999999999999887

>1gl2_C VTI1B, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1

Probab=99.65  E-value=3.1e-16  Score=99.26  Aligned_cols=64  Identities=36%  Similarity=0.602  Sum_probs=58.3

Q ss_pred             HHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcHhhhhhhHHHHHHHHHHHHH
Q 030656           81 ERVNQSTDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSR  144 (174)
Q Consensus        81 ~~l~~~~~~L~~s~r~~~ete~~g~~~l~~L~~Qre~L~~~~~~~~~i~~~l~~s~~ll~~i~r  144 (174)
                      ++|++++++|.+|.+++.|||++|.+|+.+|+.|||+|.++++++++++.++++|.++|+.|.|
T Consensus         2 ~rL~~t~~~l~~s~ri~~ETE~iG~~~l~~L~~QREql~~t~~~l~~~d~~l~~s~k~L~~m~R   65 (65)
T 1gl2_C            2 SHMNRATQSIERSHRIATETDQIGTEIIEELGEQRDQLERTKSRLVNTNENLSKSRKILRSMSR   65 (65)
T ss_dssp             --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhHHHhHHhHHHHHHHHHHhhcC
Confidence            5688999999999999999999999999999999999999999999999999999999999976

>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A

Probab=99.40  E-value=2.4e-12  Score=84.23  Aligned_cols=68  Identities=13%  Similarity=0.267  Sum_probs=64.1

Q ss_pred             hhhhHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcHhhhhhhHHHHHHHHHHHHH
Q 030656           77 MMSTERVNQSTDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSR  144 (174)
Q Consensus        77 l~~~~~l~~~~~~L~~s~r~~~ete~~g~~~l~~L~~Qre~L~~~~~~~~~i~~~l~~s~~ll~~i~r  144 (174)
                      ...+...++++.++.++.+++.||+++|.+|+..|+.|||+|.+++..+++++.++++|.++|+.|.+
T Consensus        12 ~~~~~~~~~s~~s~~~~l~~a~Ete~~G~~Tl~~L~~Q~Eql~r~~~~ld~i~~~l~~a~k~L~~m~k   79 (79)
T 1n7s_C           12 RRADQLADESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLDRVEEGMNHINQDMKEAEKNLKDLGK   79 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHhHHHHHHHHHhhhcC
Confidence            45577789999999999999999999999999999999999999999999999999999999999863

>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1

Probab=99.13  E-value=1.5e-10  Score=70.29  Aligned_cols=52  Identities=17%  Similarity=0.371  Sum_probs=49.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcHhhhhhhHHHHHHHHHHH
Q 030656           91 KDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAM  142 (174)
Q Consensus        91 ~~s~r~~~ete~~g~~~l~~L~~Qre~L~~~~~~~~~i~~~l~~s~~ll~~i  142 (174)
                      .++.+++.||+++|..|+..|..|+|+|.++...++++++++++|.++|+.|
T Consensus         3 ~~~~~l~~ese~~g~~Tl~~L~~QgEql~r~~~~ld~i~~~l~~a~k~L~~m   54 (54)
T 1nhl_A            3 RRILGLAIESQDAGIKTITMLDEQKEQLNRIEEGLDQINKDMRETEKTLTEL   54 (54)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHhHHHHHHhHHHHHHHHHhcC
Confidence            4788999999999999999999999999999999999999999999999764

>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1

Probab=98.88  E-value=3.3e-09  Score=72.62  Aligned_cols=46  Identities=26%  Similarity=0.507  Sum_probs=43.1

Q ss_pred             hHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030656            2 FWQIRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRLVSG   47 (174)
Q Consensus         2 ~~~i~qme~E~~~~~~~~r~~~~~~~~~~~~~l~~l~~~~~~~~~~   47 (174)
                      ..+|+||++|++++||+.|..|..|++.|+.+|+.++++|+++...
T Consensus        51 ~ell~qMelE~r~~p~~~R~~~~~klr~Yk~dL~~lk~elk~~~~~   96 (102)
T 1vcs_A           51 RELLEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLETDFKRSRIA   96 (102)
T ss_dssp             HHHHHHHHHHHTTSCTTTHHHHHHHHHHHHHHHHHHHHHTHHHHTC
T ss_pred             HHHHHHHHHHHHhCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            3689999999999999999999999999999999999999988765

>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V

Probab=98.75  E-value=1.2e-08  Score=69.81  Aligned_cols=41  Identities=29%  Similarity=0.459  Sum_probs=38.5

Q ss_pred             hHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 030656            2 FWQIRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVK   42 (174)
Q Consensus         2 ~~~i~qme~E~~~~~~~~r~~~~~~~~~~~~~l~~l~~~~~   42 (174)
                      ..+|+|||+|++++||+.|..|..|++.|+.+|+.++++|+
T Consensus        62 ~eLl~qMelE~r~~p~s~R~~~~~klr~Yk~dL~~lk~elk  102 (102)
T 2qyw_A           62 NETLAEMEEELRYAPLTFRNPMMSKLRNYRKDLAKLHREVR  102 (102)
T ss_dssp             HHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            36899999999999999999999999999999999999873

>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C

Probab=98.74  E-value=1.1e-08  Score=69.29  Aligned_cols=45  Identities=31%  Similarity=0.497  Sum_probs=42.1

Q ss_pred             hHHHHHHHHHHhcC--ChhhHHHHHHHHHHHHHHHHH-HHHHHHHHhc
Q 030656            2 FWQIRKMDLEARSL--QPNVKAVLLAKLREYKSDLNN-LKSEVKRLVS   46 (174)
Q Consensus         2 ~~~i~qme~E~~~~--~~~~r~~~~~~~~~~~~~l~~-l~~~~~~~~~   46 (174)
                      ..+|+||++|++++  ||+.|..|+.|++.|+.+|++ ++++|+++..
T Consensus        47 ~ell~qMelE~~~~~~p~~~R~~~~~klr~Yk~dl~~~lk~~lk~l~d   94 (97)
T 3onj_A           47 FDLLDQMDVEVNNSIGDASERATYKAKLREWKKTIQSDIKRPLQSLVD   94 (97)
T ss_dssp             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            36899999999999  999999999999999999999 9999998764

>3b5n_C Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1

Probab=98.72  E-value=1e-07  Score=60.52  Aligned_cols=61  Identities=13%  Similarity=0.210  Sum_probs=55.9

Q ss_pred             hchhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcHhhhhhhHHHHHHHHHHHHH
Q 030656           84 NQSTDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSR  144 (174)
Q Consensus        84 ~~~~~~L~~s~r~~~ete~~g~~~l~~L~~Qre~L~~~~~~~~~i~~~l~~s~~ll~~i~r  144 (174)
                      +.+..+-.++.+++.|++++|.+|+..|..|.|+|.++...++.++.++..|.+.++.+..
T Consensus         8 ~esl~STrr~L~~a~e~e~~g~~Tl~~L~~QgEqL~rtE~~ld~i~~~~k~aek~l~~Lk~   68 (70)
T 3b5n_C            8 QSSVASTRNTLKMAQDAERAGMNTLGMLGHQSEQLNNVEGNLDLMKVQNKVADEKVAELKK   68 (70)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            3455677889999999999999999999999999999999999999999999999998864

>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1

Probab=98.57  E-value=6.2e-08  Score=63.57  Aligned_cols=63  Identities=19%  Similarity=0.277  Sum_probs=55.9

Q ss_pred             HHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcHhhhhhhHHHHHHHHHHHH
Q 030656           81 ERVNQSTDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMS  143 (174)
Q Consensus        81 ~~l~~~~~~L~~s~r~~~ete~~g~~~l~~L~~Qre~L~~~~~~~~~i~~~l~~s~~ll~~i~  143 (174)
                      ..-+.+..+..++.+++.+++++|.+|+..|..|+|+|.++...+++|+.++..|.+.|+.|.
T Consensus        20 ~~~~esl~STrr~l~l~~es~~~g~~Tl~~L~~QgEQL~rie~~ld~I~~dl~~Aek~L~~L~   82 (83)
T 1l4a_C           20 QVTDDSLESTRRMLNMCEESKEAGIRTLVMLDEQGEQLDRIEEGLDQINQDMKDAEKNLEGME   82 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGCTTC--
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            334556788889999999999999999999999999999999999999999999998887664

>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B

Probab=98.05  E-value=0.00024  Score=48.80  Aligned_cols=81  Identities=15%  Similarity=0.122  Sum_probs=60.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcHhhhhhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q 030656           87 TDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTA---MSRRMSRNKWIIGTVVAVLVIA  163 (174)
Q Consensus        87 ~~~L~~s~r~~~ete~~g~~~l~~L~~Qre~L~~~~~~~~~i~~~l~~s~~ll~~---i~rr~~~dk~il~~ii~~l~~~  163 (174)
                      ...+.+..+.+.|..++-.+...-...|.+.+.++..++.++..++..++.-++.   ..++..+-+|++++++++++++
T Consensus        20 ~~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~kA~~yqk~~rkk~~i~l~~~~i~~~i   99 (109)
T 3hd7_B           20 HSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRKKIMIIICCVILGII   99 (109)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcceehHHHHHHHHHH
Confidence            4456677778888999999999999999999999999999999999999988854   4444555555555444444333


Q ss_pred             HHHH
Q 030656          164 IILI  167 (174)
Q Consensus       164 i~~v  167 (174)
                      ++++
T Consensus       100 ~~~~  103 (109)
T 3hd7_B          100 IAST  103 (109)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            3333

>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A

Probab=98.00  E-value=0.00036  Score=46.39  Aligned_cols=85  Identities=11%  Similarity=0.191  Sum_probs=63.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030656           86 STDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSRRMSRNKWIIGTVVAVLVIAII  165 (174)
Q Consensus        86 ~~~~L~~s~r~~~ete~~g~~~l~~L~~Qre~L~~~~~~~~~i~~~l~~s~~ll~~i~rr~~~dk~il~~ii~~l~~~i~  165 (174)
                      +.+.|...+.-++|+.++.....+.+-...|.|....++.++....-..=.+.-+.+.|+++-..+=+++++++++++++
T Consensus         3 ~~d~l~~vq~ev~evk~iM~~NI~kvL~RgekL~~L~~kt~~L~~~s~~F~~~A~~l~rkmwwkn~K~~iii~~iv~~il   82 (91)
T 3hd7_A            3 HMRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMIILGVICAIIL   82 (91)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34677788888999999999999999999999999999999998888877788888888877774444444433333343


Q ss_pred             HHHHH
Q 030656          166 LILYF  170 (174)
Q Consensus       166 ~v~~~  170 (174)
                      ++++.
T Consensus        83 ~ii~~   87 (91)
T 3hd7_A           83 IIIIV   87 (91)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44433

>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}

Probab=96.94  E-value=0.0003  Score=49.08  Aligned_cols=85  Identities=12%  Similarity=0.205  Sum_probs=65.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030656           86 STDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSRRMSRNKWIIGTVVAVLVIAII  165 (174)
Q Consensus        86 ~~~~L~~s~r~~~ete~~g~~~l~~L~~Qre~L~~~~~~~~~i~~~l~~s~~ll~~i~rr~~~dk~il~~ii~~l~~~i~  165 (174)
                      +.+.|...+..++|+.++.....+.+...-|.|....++..+....-..=.+--+.+.|+++-.++-+++++++++++++
T Consensus        31 ~~d~l~~vq~evdeVk~IM~~NIdkvLeRGEkLd~L~~KTe~L~~~S~~F~k~A~kl~rkmwwkn~K~~iii~~iv~iii  110 (119)
T 2kog_A           31 SNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMIILGVICAIIL  110 (119)
T ss_dssp             SCSHHHHSSHHHHHHHHHHHHHHHHHHCCCCSSCCCCSCCSCCCSSSHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34566677778888889999999999999999999988888888887777788888888887777666666555555555


Q ss_pred             HHHHH
Q 030656          166 LILYF  170 (174)
Q Consensus       166 ~v~~~  170 (174)
                      ++++.
T Consensus       111 ~iIi~  115 (119)
T 2kog_A          111 IIIIV  115 (119)
T ss_dssp             HHHHH
T ss_pred             HHhhh
Confidence            55443

>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A

Probab=96.45  E-value=0.06  Score=35.46  Aligned_cols=82  Identities=16%  Similarity=0.264  Sum_probs=53.6

Q ss_pred             HhhchhHHHHHHHHHHHHHHHHHH---HHHHHHHHhHHHHHHHHhcHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030656           82 RVNQSTDRIKDSRRTMLETEELGV---SILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSRRMSRNKWIIGTVVA  158 (174)
Q Consensus        82 ~l~~~~~~L~~s~r~~~ete~~g~---~~l~~L~~Qre~L~~~~~~~~~i~~~l~~s~~ll~~i~rr~~~dk~il~~ii~  158 (174)
                      .+.+....+++.+.++.+..+--.   +-++.|.+..+.|........      ..|+++=+.|--+-++-++|++++++
T Consensus         6 ~l~~vq~ev~evk~iM~~NI~kvL~RgekL~~L~~kt~~L~~~s~~F~------~~A~~l~rkmwwkn~K~~iii~~iv~   79 (91)
T 3hd7_A            6 RLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFE------TSAAKLKRKYWWKNLKMMIILGVICA   79 (91)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455566666666655544332   345667777777766544433      46777778888898999999888887


Q ss_pred             HHHHHHHHHHH
Q 030656          159 VLVIAIILILY  169 (174)
Q Consensus       159 ~l~~~i~~v~~  169 (174)
                      +++++|++.++
T Consensus        80 ~il~ii~~~~~   90 (91)
T 3hd7_A           80 IILIIIIVYFS   90 (91)
T ss_dssp             HHHHHHHHTTC
T ss_pred             HHHHHHHHHHh
Confidence            77766665543

>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens}

Probab=96.38  E-value=0.025  Score=36.52  Aligned_cols=66  Identities=12%  Similarity=0.091  Sum_probs=55.9

Q ss_pred             HHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcHhhhhhhHHHHHHHHHHHHHHH
Q 030656           81 ERVNQSTDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSRRM  146 (174)
Q Consensus        81 ~~l~~~~~~L~~s~r~~~ete~~g~~~l~~L~~Qre~L~~~~~~~~~i~~~l~~s~~ll~~i~rr~  146 (174)
                      ..+.++...|+.....+....++|.++-.+|..|.+.|......++.+.+.|..+++-+..+.++.
T Consensus        12 ~~~~eQD~~Ld~L~~~v~~LK~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~L~~~~~r~~~~~~~~   77 (82)
T 2nps_D           12 NMGRMQDEQLELVSGSIGVLKNMSQRIGGELEEQAVMLEDFSHELESTQSRLDNVMKKLAKVSHMT   77 (82)
T ss_dssp             ------CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            345566677888888999999999999999999999999999999999999999999999888764

>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1

Probab=96.23  E-value=0.026  Score=34.66  Aligned_cols=61  Identities=11%  Similarity=0.237  Sum_probs=49.9

Q ss_pred             hhchhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcHhhhhhhHHHHHHHHHHHH
Q 030656           83 VNQSTDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMS  143 (174)
Q Consensus        83 l~~~~~~L~~s~r~~~ete~~g~~~l~~L~~Qre~L~~~~~~~~~i~~~l~~s~~ll~~i~  143 (174)
                      +.++...|+.-...+....++|.++-.++..|.+.|.....+++.+...+..+++-+..+.
T Consensus         4 ~~eqD~~Ld~L~~~v~~lk~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~l~~~~~rl~~l~   64 (65)
T 1gl2_D            4 MQEQDAGLDALSSIISRQKQMGQEIGNELDEQNEIIDDLANLVENTDEKLRTEARRVTLVD   64 (65)
T ss_dssp             ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            4556678888888999999999999999999999999999999999999999987776654

>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae}

Probab=95.89  E-value=0.048  Score=33.57  Aligned_cols=55  Identities=13%  Similarity=0.217  Sum_probs=48.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcHhhhhhhHHHHHHHHHH
Q 030656           87 TDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTA  141 (174)
Q Consensus        87 ~~~L~~s~r~~~ete~~g~~~l~~L~~Qre~L~~~~~~~~~i~~~l~~s~~ll~~  141 (174)
                      ...|+....++.-...+|.++-.++..|.+.|.++..+++.++..+..+++-|..
T Consensus         9 D~nLd~l~~~~~rlk~ma~~mg~Eid~QN~~ldrI~~k~d~~d~ri~~~~~Rl~~   63 (64)
T 3b5n_D            9 DRNLDQIQQVSNRLKKMALTTGKELDSQQKRLNNIEESTDDLDINLHMNTNRLAG   63 (64)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            4567777788888999999999999999999999999999999999998876654

>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1

Probab=95.67  E-value=0.059  Score=35.14  Aligned_cols=62  Identities=6%  Similarity=0.148  Sum_probs=53.7

Q ss_pred             hhchhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcHhhhhhhHHHHHHHHHHHHH
Q 030656           83 VNQSTDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSR  144 (174)
Q Consensus        83 l~~~~~~L~~s~r~~~ete~~g~~~l~~L~~Qre~L~~~~~~~~~i~~~l~~s~~ll~~i~r  144 (174)
                      ..+....|+.....+....++|.++-.+|..|.+.|..+..+++.+...+..+++-++.+.+
T Consensus        24 e~eqD~~Ld~Ls~~v~rLk~la~~ig~Eld~Qn~~Ld~i~~~~D~~~~rl~~~~~rl~~ll~   85 (87)
T 1sfc_D           24 ENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKMLG   85 (87)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhh
Confidence            33455677888888889999999999999999999999999999999999999887776543

>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B

Probab=95.44  E-value=0.12  Score=31.64  Aligned_cols=57  Identities=5%  Similarity=0.158  Sum_probs=49.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcHhhhhhhHHHHHHHHHHH
Q 030656           86 STDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAM  142 (174)
Q Consensus        86 ~~~~L~~s~r~~~ete~~g~~~l~~L~~Qre~L~~~~~~~~~i~~~l~~s~~ll~~i  142 (174)
                      ....|+.-...+....++|.++-.+|..|.+.|..+..++..+...+..+++-++.+
T Consensus         8 qD~~Ld~L~~~v~~lk~la~~ig~El~~Qn~~Ld~l~~~~d~~~~~l~~~~~rl~~l   64 (66)
T 1n7s_D            8 MDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKM   64 (66)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            345677777788888999999999999999999999999999999999998776654

>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1

Probab=94.72  E-value=0.091  Score=34.28  Aligned_cols=58  Identities=9%  Similarity=0.204  Sum_probs=50.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcHhhhhhhHHHHHHHHHHHH
Q 030656           86 STDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMS  143 (174)
Q Consensus        86 ~~~~L~~s~r~~~ete~~g~~~l~~L~~Qre~L~~~~~~~~~i~~~l~~s~~ll~~i~  143 (174)
                      ....|+.....+....++|.++-.+|..|.+.|.++..+++.++..+..+++-++.+-
T Consensus        28 qD~~Ld~ls~~l~rLk~mA~~mg~Eld~Qn~~LD~i~~~~D~~~~rl~~~n~r~~kll   85 (87)
T 1l4a_D           28 MENNMKEVSSMIGNLRNMAIDMGNEIGSQNRQVDRIQQKAESNESRIDEANKKATKLL   85 (87)
T ss_dssp             HHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTHHHHHHHHCC
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4456777777888888999999999999999999999999999999999988776653

>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B

Probab=82.50  E-value=6.8  Score=24.37  Aligned_cols=57  Identities=11%  Similarity=0.078  Sum_probs=47.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcHhhhhhhHHHHHHHHHHHHH
Q 030656           88 DRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSR  144 (174)
Q Consensus        88 ~~L~~s~r~~~ete~~g~~~l~~L~~Qre~L~~~~~~~~~i~~~l~~s~~ll~~i~r  144 (174)
                      ..+.+..+.+.|..++=.....=...|.+.|.++..++..+..++..+..-+..=.+
T Consensus        10 ~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~   66 (77)
T 1jth_B           10 SEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVK   66 (77)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345566667778888888888888899999999999999999999999988876555

>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}

Probab=80.15  E-value=2.9  Score=28.61  Aligned_cols=82  Identities=17%  Similarity=0.274  Sum_probs=44.3

Q ss_pred             HHhhchhHHHHHHHHHHHHHHHHHHH---HHHHHHHhHHHHHHHHhcHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030656           81 ERVNQSTDRIKDSRRTMLETEELGVS---ILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSRRMSRNKWIIGTVV  157 (174)
Q Consensus        81 ~~l~~~~~~L~~s~r~~~ete~~g~~---~l~~L~~Qre~L~~~~~~~~~i~~~l~~s~~ll~~i~rr~~~dk~il~~ii  157 (174)
                      +.+.+....+++.+.++.+..+--.+   -++.|.+..+.|..      +...--..|+++-+.|--+.++-++|+++++
T Consensus        33 d~l~~vq~evdeVk~IM~~NIdkvLeRGEkLd~L~~KTe~L~~------~S~~F~k~A~kl~rkmwwkn~K~~iii~~iv  106 (119)
T 2kog_A           33 RRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQA------GASQFETSAAKLKRKYWWKNLKMMIILGVIC  106 (119)
T ss_dssp             SHHHHSSHHHHHHHHHHHHHHHHHHCCCCSSCCCCSCCSCCCS------SSHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555566666666555442221   12233333332221      1122223556677777778888888888877


Q ss_pred             HHHHHHHHHHH
Q 030656          158 AVLVIAIILIL  168 (174)
Q Consensus       158 ~~l~~~i~~v~  168 (174)
                      ++++++|++++
T Consensus       107 ~iii~iIi~~~  117 (119)
T 2kog_A          107 AIILIIIIVYF  117 (119)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHhhhhe
Confidence            77766666554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	174
d1vcsa1	89	a.47.2.1 (A:8-96) Vesicle transport v-SNARE protei	2e-09

>d1vcsa1 a.47.2.1 (A:8-96) Vesicle transport v-SNARE protein Vti1-like 2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 89

class: All alpha proteins
fold: STAT-like
superfamily: t-snare proteins
family: t-snare proteins
domain: Vesicle transport v-SNARE protein Vti1-like 2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.1 bits (120), Expect = 2e-09
 Identities = 12/39 (30%), Positives = 24/39 (61%)

Query: 5  IRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKR 43
          + +MDLE R + P  + +   ++R YK ++  L+++ KR
Sbjct: 47 LEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLETDFKR 85

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	174
d1vcsa1	89	Vesicle transport v-SNARE protein Vti1-like 2 {Mou	99.01

>d1vcsa1 a.47.2.1 (A:8-96) Vesicle transport v-SNARE protein Vti1-like 2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: STAT-like
superfamily: t-snare proteins
family: t-snare proteins
domain: Vesicle transport v-SNARE protein Vti1-like 2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.01  E-value=2.8e-10  Score=74.41  Aligned_cols=45  Identities=27%  Similarity=0.514  Sum_probs=42.3

Q ss_pred             hHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030656            2 FWQIRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRLVS   46 (174)
Q Consensus         2 ~~~i~qme~E~~~~~~~~r~~~~~~~~~~~~~l~~l~~~~~~~~~   46 (174)
                      ..+|+||++|++++||+.|..+..|++.|+++|+.++++|++++.
T Consensus        44 ~ell~qMelEvr~~p~s~R~~~~~klr~Yk~dl~~lk~elk~a~~   88 (89)
T d1vcsa1          44 RELLEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLETDFKRSRI   88 (89)
T ss_dssp             HHHHHHHHHHHTTSCTTTHHHHHHHHHHHHHHHHHHHHHTHHHHT
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            368999999999999999999999999999999999999998763