Citrus Sinensis ID: 030695

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170---
Protein Sequence
MSRATVELDFFGLENKENSSNKPQFKKFPRQRSFRDIQGAISKINPEIIKSVIASGSAKSSISLPSTPKEEPITFPDVPLYRHIPKSGSENVSETAPLTIFYNGTVAVFDVHREKAEHILKLAVEGNSKSFESNDANVASDQQQQLLETLNTGDLPIARRKSLQRFLEKRKER
Secondary Structure (PSIPRED)
cccccEEEEccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccEEEEEccEEEEEcccHHHHHHHHHHHHccccccccccccccccHHHHHHHcccccccccHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccEEEEEHccccccccccccHHcccccccccHHHHHHHHHHccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccEEEEEccEEEEEEccHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MSRATVEldffglenkenssnkpqfkkfprqrsfrDIQGAISKINPEIIKSVIAsgsakssislpstpkeepitfpdvplyrhipksgsenvsetapltifyNGTVAVFDVHREKAEHILKLAvegnsksfesndanvaSDQQQQLLETlntgdlpiARRKSLQRFLEKRKER
Flexible Loop (DISEMBL)
msratveldffglenkenssnkpqfkkfprqrSFRDIQGAISKINPEIIKSVIASGSAkssislpstpkeepitFPDVPLYRHIPKSGSENVSETAPLTIFYNGTVAVFDVHREKAEHILKLAVEGNSKSFESNDANVASDQQQQLLetlntgdlpiarRKSLQRflekrker
Low Complexity Region (SEG)
MSRATVELDFFGLENKENSSNKPQFKKFPRQRSFRDIQGAISKINPEIIKSVIASGSAKSSISLPSTPKEEPITFPDVPLYRHIPKSGSENVSETAPLTIFYNGTVAVFDVHREKAEHILKLAVEGNSKSFESNDANVASDQQQQLLETLNTGDLPIARRKSLQRFLEKRKER
Disordered region (IsUnstruct)
*******************************************INPEIIK****************************PLYR************TAPLTIFYNGTVAVFDVHREKAEHILKLAV*************************************************
Disordered Region (DISOPRED)
***ATVE*DFF****************************************************************************************IFYNGTVAVFDVHREKAEHILKLA**************************************SLQR*LEK****
Disordered Region (DISEMBL)
MSRATVELDFFGLENKENSSNKPQFKKFPRQRSFRDIQGAISKINPEIIKSVIAS**************EEPITFPDVPLYRHIPKSGSENVSETAPLTIFYNGTVAVFDVHREKAEHILKLAVEGNSKSFESNDANVASDQQQQLLETLNTGDLPIARRKSLQRFLEKRKER
Disordered Region (DISPRO)
****TVELDFFGLEN****************RSFRDIQGAISKINPEIIKSVIAS***************************************TAPLTIFYNGTVAVFDVHREKAEHILKLAVE****************************DLP**R****QRFLE*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSRATVELDFFGLENKENSSNKPQFKKFPRQRSFRDIQGAISKINPEIIKSVIASGSAKSSISLPSTPKEEPITFPDVPLYRHIPKSGSENVSETAPLTIFYNGTVAVFDVHREKAEHILKLAVEGNSKSFESNDANVASDQQQQLLETLNTGDLPIARRKSLQRFLEKRKER
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	173	2.2.26 [Sep-21-2011]
Q93ZM9	197	Protein TIFY 9 OS=Arabido	yes	no	0.982	0.862	0.542	5e-42
Q9LMA8	253	Protein TIFY 10A OS=Arabi	no	no	0.468	0.320	0.418	9e-11
Q9S7M2	249	Protein TIFY 10B OS=Arabi	no	no	0.468	0.325	0.392	1e-10
Q9C5K8	187	Protein TIFY 3B OS=Arabid	no	no	0.439	0.406	0.414	9e-09
Q9M246	238	Protein TIFY 3A OS=Arabid	no	no	0.537	0.390	0.336	4e-07
Q8W4J8	267	Protein TIFY 7 OS=Arabido	no	no	0.531	0.344	0.300	4e-05

>sp|Q93ZM9|TIF9_ARATH Protein TIFY 9 OS=Arabidopsis thaliana GN=TIFY9 PE=1 SV=1

 Score =  170 bits (430), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 102/188 (54%), Positives = 130/188 (69%), Gaps = 18/188 (9%)

Query: 1   MSRATVELDFFGLENKE-NSSNKPQFKKF-PRQRSFRDIQGAISKINPEIIKSVIAS--- 55
           MS+AT+ELDF GLE K+ N++ KP+F+KF  R+RSFRDIQGAISKI+PEIIKS++AS   
Sbjct: 1   MSKATIELDFLGLEKKQTNNAPKPKFQKFLDRRRSFRDIQGAISKIDPEIIKSLLASTGN 60

Query: 56  --GSAKSSISLPSTPKEEPITFPDVPLYRHIPKSGSENVSETAPLTIFYNGTVAVFDVHR 113
              S+  S S+PSTP+E+    P  P++  + +S +E VS T P+TIFYNG+V+VF V R
Sbjct: 61  NSDSSAKSRSVPSTPREDQPQIPISPVHASLARSSTELVSGTVPMTIFYNGSVSVFQVSR 120

Query: 114 EKAEHILKLAVEGNSKSFESNDANVASDQQQQLLETLN--------TGDLPIARRKSLQR 165
            KA  I+K+A E  SK  ES   ++ +D    L  TL          GDLPIARRKSLQR
Sbjct: 121 NKAGEIMKVANEAASKKDES---SMETDLSVILPTTLRPKLFGQNLEGDLPIARRKSLQR 177

Query: 166 FLEKRKER 173
           FLEKRKER
Sbjct: 178 FLEKRKER 185

Modulator of growth inhibition. Isoform 2, but not isoform 1, confers a strong methyl-jasmonate insensitivity. Not involved in the growth response to salicylic acid or indole-3-acetic acid. May be negatively regulated by the proteasome in an SCF(COI1) E3 ubiquitin-protein ligase complex-dependent manner.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9LMA8|TI10A_ARATH Protein TIFY 10A OS=Arabidopsis thaliana GN=TIFY10A PE=1 SV=1

 Score = 66.2 bits (160), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 41/98 (41%), Positives = 56/98 (57%), Gaps = 17/98 (17%)

Query: 93  SETAPLTIFYNGTVAVF-DVHREKAEHILKLAVEGNSKSFESNDANVASD---------- 141
           S+TAPLTIFY G V VF D   EKA+ ++ LA +G + S   N  ++ S+          
Sbjct: 122 SQTAPLTIFYAGQVIVFNDFSAEKAKEVINLASKGTANSLAKNQTDIRSNIATIANQVPH 181

Query: 142 ----QQQQLLETLNT--GDLPIARRKSLQRFLEKRKER 173
                 Q+ +++  T   +LPIARR SL RFLEKRK+R
Sbjct: 182 PRKTTTQEPIQSSPTPLTELPIARRASLHRFLEKRKDR 219

Repressor of jasmonate responses negatively regulated by the proteasome in an SCF(COI1) E3 ubiquitin-protein ligase complex-dependent manner. Jasmonoyl-isoleucine (JA-Ile) specifically promotes COI1-TIFY10A/JAZ1 interaction. Interacts with COI1 and inositol pentakisphosphate to form a high-affinity jasmonates coreceptor.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9S7M2|TI10B_ARATH Protein TIFY 10B OS=Arabidopsis thaliana GN=TIFY10B PE=1 SV=1

 Score = 65.9 bits (159), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 42/107 (39%), Positives = 58/107 (54%), Gaps = 26/107 (24%)

Query: 93  SETAPLTIFYNGTVAVFD-VHREKAEHILKLAVEGNSKSFESNDANVASDQ----QQQLL 147
           S++APLTIFY G V VFD    EKA+ ++ LA +G++KSF    A V ++     Q+++ 
Sbjct: 115 SQSAPLTIFYGGRVMVFDDFSAEKAKEVIDLANKGSAKSFTCFTAEVNNNHSAYSQKEIA 174

Query: 148 ETLN---------------------TGDLPIARRKSLQRFLEKRKER 173
            + N                       +LPIARR SL RFLEKRK+R
Sbjct: 175 SSPNPVCSPAKTAAQEPIQPNPASLACELPIARRASLHRFLEKRKDR 221

Repressor of jasmonate responses negatively regulated by the proteasome in an SCF(COI1) E3 ubiquitin-protein ligase complex-dependent manner.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C5K8|TIF3B_ARATH Protein TIFY 3B OS=Arabidopsis thaliana GN=TIFY3B PE=1 SV=1

 Score = 59.7 bits (143), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 41/99 (41%), Positives = 56/99 (56%), Gaps = 23/99 (23%)

Query: 98  LTIFYNGTVAVFD-VHREKAEHILKLAVEG----NSKSFE-------------SNDANVA 139
           LTIF+ G+V VFD +  EK + IL++A +     NS S               S+ +NVA
Sbjct: 58  LTIFFGGSVTVFDGLPSEKVQEILRIAAKAMETKNSTSISPVSSPALNRAPSFSSTSNVA 117

Query: 140 SDQQQQL-LETLN----TGDLPIARRKSLQRFLEKRKER 173
           S   Q   ++ ++    T DLPIARR SLQRFLEKR++R
Sbjct: 118 SPAAQPFPIQPISFCRSTADLPIARRHSLQRFLEKRRDR 156

Repressor of jasmonate responses negatively regulated by the proteasome in an SCF(COI1) E3 ubiquitin-protein ligase complex-dependent manner.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M246|TIF3A_ARATH Protein TIFY 3A OS=Arabidopsis thaliana GN=TIFY3A PE=1 SV=1

 Score = 54.3 bits (129), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 54/98 (55%), Gaps = 5/98 (5%)

Query: 77  DVPLYRHIPKSGSENVSETAPLTIFYNGTVAVFD-VHREKAEHILKLAVEGNSKSFESND 135
           D+ + R I ++ S     +  LTI + G+  VF+ V  +K + I+++A  G     ++ +
Sbjct: 25  DLLVERSIHEARSTEPDASTQLTIIFGGSCRVFNGVPAQKVQEIIRIAFAGK----QTKN 80

Query: 136 ANVASDQQQQLLETLNTGDLPIARRKSLQRFLEKRKER 173
               +    + L      DLPIARR+SLQRFLEKR++R
Sbjct: 81  VTGINPALNRALSFSTVADLPIARRRSLQRFLEKRRDR 118

Repressor of jasmonate responses negatively regulated by the proteasome in an SCF(COI1) E3 ubiquitin-protein ligase complex-dependent manner.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8W4J8|TIF7_ARATH Protein TIFY 7 OS=Arabidopsis thaliana GN=TIFY7 PE=1 SV=2

 Score = 47.8 bits (112), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 59/143 (41%), Gaps = 51/143 (35%)

Query: 78  VPLYRH---IPKSGSENVSETAPLTIFYNGTVAVF-DVHREKAEHILKLAVEGNSKSFES 133
           VPL  H   +P+  S   S    LTIFY GT++VF D+  +KA+ I+  A  GN    E+
Sbjct: 99  VPLPTHPSLVPRVASSGSSPQ--LTIFYGGTISVFNDISPDKAQAIMLCA--GNGLKGET 154

Query: 134 NDAN-------------------------------------VASDQQQQLLETLNTG--- 153
            D+                                      VA+     ++E+ N     
Sbjct: 155 GDSKPVREAERMYGKQIHNTAATSSSSATHTDNFSRCRDTPVAATNAMSMIESFNAAPRN 214

Query: 154 ---DLPIARRKSLQRFLEKRKER 173
               +P AR+ SL RFLEKRKER
Sbjct: 215 MIPSVPQARKASLARFLEKRKER 237

Repressor of jasmonate responses negatively regulated by the proteasome in an SCF(COI1) E3 ubiquitin-protein ligase complex-dependent manner.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	173
224075495	199	predicted protein [Populus trichocarpa]	0.988	0.859	0.618	3e-51
224053547	196	predicted protein [Populus trichocarpa]	0.988	0.872	0.582	2e-44
255543162	177	conserved hypothetical protein [Ricinus	0.936	0.915	0.595	1e-41
297807341	198	hypothetical protein ARALYDRAFT_488138 [	1.0	0.873	0.548	2e-41
42573357	185	protein TIFY 9 [Arabidopsis thaliana] gi	0.982	0.918	0.542	2e-40
18416997	197	protein TIFY 9 [Arabidopsis thaliana] gi	0.982	0.862	0.542	2e-40
7529277	230	putative protein [Arabidopsis thaliana]	0.982	0.739	0.542	8e-40
225425136	212	PREDICTED: protein TIFY 9 [Vitis vinifer	0.971	0.792	0.526	6e-38
449517038	184	PREDICTED: protein TIFY 9-like [Cucumis	0.930	0.875	0.546	7e-38
449445778	169	PREDICTED: protein TIFY 9-like [Cucumis	0.930	0.952	0.546	1e-37

>gi|224075495|ref|XP_002304653.1| predicted protein [Populus trichocarpa] gi|222842085|gb|EEE79632.1| predicted protein [Populus trichocarpa]

 Score =  206 bits (524), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 115/186 (61%), Positives = 140/186 (75%), Gaps = 15/186 (8%)

Query: 1   MSRATVELDFFGLENKENSSNKPQFKKFPRQRSFRDIQGAISKINPEIIKSVIASGSAKS 60
           MSR TVELDFFG+ +KEN S+  + K F RQRSFRDIQ AISKINPE++KSVIASGSA +
Sbjct: 1   MSRGTVELDFFGM-SKENRSSSSKSKCFNRQRSFRDIQSAISKINPELLKSVIASGSASN 59

Query: 61  -------------SISLPSTPKEEPITFPDVPLYRHIPKSGSENVSETAPLTIFYNGTVA 107
                        + S+PSTPK++   FP +P+Y  +P+   EN  ETAPLTIFYNGTVA
Sbjct: 60  KATPANGNQLSNKAFSVPSTPKQDLPPFPALPVYFPLPRLNLENPPETAPLTIFYNGTVA 119

Query: 108 VFDVHREKAEHILKLAVEGNSKSFESNDANVASDQQQQLLETLNTGDLPIARRKSLQRFL 167
           VFDV R+KAE+ILKLA +G SK+   + A+  +D QQ+LLE+L+ GDLPIARRKSLQRFL
Sbjct: 120 VFDVPRDKAENILKLAEKGFSKTVVESVADPRTDHQQKLLESLD-GDLPIARRKSLQRFL 178

Query: 168 EKRKER 173
           EKRKER
Sbjct: 179 EKRKER 184

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224053547|ref|XP_002297866.1| predicted protein [Populus trichocarpa] gi|222845124|gb|EEE82671.1| predicted protein [Populus trichocarpa]

 Score =  183 bits (465), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 109/187 (58%), Positives = 130/187 (69%), Gaps = 16/187 (8%)

Query: 1   MSRAT-VELDFFGLENKENSSNKPQFKKFPRQRSFRDIQGAISKINPEIIKSVIASGSAK 59
           MSRA  VELDFF +  KEN S+  + K   RQRSFRDIQ AISKINPE++KSVIASGSA 
Sbjct: 1   MSRAAAVELDFFAM-GKENKSSPSKSKFLNRQRSFRDIQSAISKINPELLKSVIASGSAA 59

Query: 60  S-------------SISLPSTPKEEPITFPDVPLYRHIPKSGSENVSETAPLTIFYNGTV 106
           +             S S+PSTPK+E  +FP +PLY  +P+       ETAPLTIFYNGTV
Sbjct: 60  TKTTPENGNQFSNKSFSVPSTPKQEQPSFPALPLYSPLPRPNMMIPPETAPLTIFYNGTV 119

Query: 107 AVFDVHREKAEHILKLAVEGNSKSFESNDANVASDQQQQLLETLNTGDLPIARRKSLQRF 166
           AVF+V R+KAE+ILKLA +  SK+      +  +D QQQL E+L+  DLPIARRKSLQRF
Sbjct: 120 AVFNVPRDKAENILKLAEKRISKTSAEPMTDPKTD-QQQLFESLDGADLPIARRKSLQRF 178

Query: 167 LEKRKER 173
           LEKRK R
Sbjct: 179 LEKRKGR 185

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255543162|ref|XP_002512644.1| conserved hypothetical protein [Ricinus communis] gi|223548605|gb|EEF50096.1| conserved hypothetical protein [Ricinus communis]

 Score =  174 bits (440), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 103/173 (59%), Positives = 123/173 (71%), Gaps = 11/173 (6%)

Query: 1   MSRATVELDFFGLENKENSSNKPQFKKFPRQRSFRDIQGAISKINPEIIKSVIASGSAKS 60
           M  ATVELDFFG+E K+N S K +F KF RQRSFRDIQ AISKINPE+++SVI SGSA  
Sbjct: 1   MWNATVELDFFGME-KDNCS-KSRFPKFNRQRSFRDIQSAISKINPELLRSVIVSGSANQ 58

Query: 61  SISLPSTPKEEPITFPDVPLYRHIPKSGSENVSETAPLTIFYNGTVAVFDVHREKAEHIL 120
             +  +  + +   FP +P++  +P+   E   +TAPLTIFYNG VAVFDV R+KAE IL
Sbjct: 59  K-NAENGNQFDSKMFPALPVFSPLPRPTLETPPQTAPLTIFYNGAVAVFDVPRDKAETIL 117

Query: 121 KLAVEGNSKSFESNDANVASDQQQQLLETLNTGDLPIARRKSLQRFLEKRKER 173
           KLA  G SKS ES         Q+ LL+ L+ GDLPIARRKSLQRFLEKRKER
Sbjct: 118 KLAENGVSKSAEST-------SQKHLLDNLD-GDLPIARRKSLQRFLEKRKER 162

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297807341|ref|XP_002871554.1| hypothetical protein ARALYDRAFT_488138 [Arabidopsis lyrata subsp. lyrata] gi|297317391|gb|EFH47813.1| hypothetical protein ARALYDRAFT_488138 [Arabidopsis lyrata subsp. lyrata]

 Score =  173 bits (438), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 102/186 (54%), Positives = 133/186 (71%), Gaps = 13/186 (6%)

Query: 1   MSRATVELDFFGLENKE-NSSNKPQFKKF-PRQRSFRDIQGAISKINPEIIKSVIASG-- 56
           MS+ATVELDF GLE K+ N++ KP+F+KF  R+RSFR+IQGAISKI+PEIIKS++ASG  
Sbjct: 1   MSKATVELDFLGLEKKQTNTAPKPKFQKFLDRRRSFREIQGAISKIDPEIIKSLLASGAN 60

Query: 57  ---SAKSSISLPSTPKEEPITFPDVPLYRHIPKSGSENVSETAPLTIFYNGTVAVFDVHR 113
              S+  + S+PSTP+E+    P  PL+  + +S +E VS T P+TIFYNGTV+VF V R
Sbjct: 61  HSDSSAKTRSVPSTPREDQPQIPISPLHVPLARSSTEVVSGTVPMTIFYNGTVSVFQVSR 120

Query: 114 EKAEHILKLAVEGNSKSFESN---DANV---ASDQQQQLLETLNTGDLPIARRKSLQRFL 167
            KA+ I+K+A E  S+  ES+   D +V    + +  +L      GDLPIARRKSLQRFL
Sbjct: 121 NKADEIMKVATETASRKDESSMETDLSVIPPTTLRPTKLFGQNLEGDLPIARRKSLQRFL 180

Query: 168 EKRKER 173
           EKRKER
Sbjct: 181 EKRKER 186

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42573357|ref|NP_974775.1| protein TIFY 9 [Arabidopsis thaliana] gi|42573359|ref|NP_974776.1| protein TIFY 9 [Arabidopsis thaliana] gi|332004482|gb|AED91865.1| protein TIFY 9 [Arabidopsis thaliana] gi|332004484|gb|AED91867.1| protein TIFY 9 [Arabidopsis thaliana]

 Score =  170 bits (430), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 102/188 (54%), Positives = 130/188 (69%), Gaps = 18/188 (9%)

Query: 1   MSRATVELDFFGLENKE-NSSNKPQFKKF-PRQRSFRDIQGAISKINPEIIKSVIAS--- 55
           MS+AT+ELDF GLE K+ N++ KP+F+KF  R+RSFRDIQGAISKI+PEIIKS++AS   
Sbjct: 1   MSKATIELDFLGLEKKQTNNAPKPKFQKFLDRRRSFRDIQGAISKIDPEIIKSLLASTGN 60

Query: 56  --GSAKSSISLPSTPKEEPITFPDVPLYRHIPKSGSENVSETAPLTIFYNGTVAVFDVHR 113
              S+  S S+PSTP+E+    P  P++  + +S +E VS T P+TIFYNG+V+VF V R
Sbjct: 61  NSDSSAKSRSVPSTPREDQPQIPISPVHASLARSSTELVSGTVPMTIFYNGSVSVFQVSR 120

Query: 114 EKAEHILKLAVEGNSKSFESNDANVASDQQQQLLETLN--------TGDLPIARRKSLQR 165
            KA  I+K+A E  SK  ES   ++ +D    L  TL          GDLPIARRKSLQR
Sbjct: 121 NKAGEIMKVANEAASKKDES---SMETDLSVILPTTLRPKLFGQNLEGDLPIARRKSLQR 177

Query: 166 FLEKRKER 173
           FLEKRKER
Sbjct: 178 FLEKRKER 185

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18416997|ref|NP_568287.1| protein TIFY 9 [Arabidopsis thaliana] gi|75163798|sp|Q93ZM9.1|TIF9_ARATH RecName: Full=Protein TIFY 9; AltName: Full=Jasmonate ZIM domain-containing protein 10; AltName: Full=Protein JASMONATE-ASSOCIATED 1 gi|15912333|gb|AAL08300.1| AT5g13220/T31B5_40 [Arabidopsis thaliana] gi|19548009|gb|AAL87368.1| AT5g13220/T31B5_40 [Arabidopsis thaliana] gi|332004483|gb|AED91866.1| protein TIFY 9 [Arabidopsis thaliana]

 Score =  170 bits (430), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 102/188 (54%), Positives = 130/188 (69%), Gaps = 18/188 (9%)

Query: 1   MSRATVELDFFGLENKE-NSSNKPQFKKF-PRQRSFRDIQGAISKINPEIIKSVIAS--- 55
           MS+AT+ELDF GLE K+ N++ KP+F+KF  R+RSFRDIQGAISKI+PEIIKS++AS   
Sbjct: 1   MSKATIELDFLGLEKKQTNNAPKPKFQKFLDRRRSFRDIQGAISKIDPEIIKSLLASTGN 60

Query: 56  --GSAKSSISLPSTPKEEPITFPDVPLYRHIPKSGSENVSETAPLTIFYNGTVAVFDVHR 113
              S+  S S+PSTP+E+    P  P++  + +S +E VS T P+TIFYNG+V+VF V R
Sbjct: 61  NSDSSAKSRSVPSTPREDQPQIPISPVHASLARSSTELVSGTVPMTIFYNGSVSVFQVSR 120

Query: 114 EKAEHILKLAVEGNSKSFESNDANVASDQQQQLLETLN--------TGDLPIARRKSLQR 165
            KA  I+K+A E  SK  ES   ++ +D    L  TL          GDLPIARRKSLQR
Sbjct: 121 NKAGEIMKVANEAASKKDES---SMETDLSVILPTTLRPKLFGQNLEGDLPIARRKSLQR 177

Query: 166 FLEKRKER 173
           FLEKRKER
Sbjct: 178 FLEKRKER 185

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|7529277|emb|CAB86629.1| putative protein [Arabidopsis thaliana]

 Score =  168 bits (425), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 102/188 (54%), Positives = 130/188 (69%), Gaps = 18/188 (9%)

Query: 1   MSRATVELDFFGLENKE-NSSNKPQFKKF-PRQRSFRDIQGAISKINPEIIKSVIAS--- 55
           MS+AT+ELDF GLE K+ N++ KP+F+KF  R+RSFRDIQGAISKI+PEIIKS++AS   
Sbjct: 1   MSKATIELDFLGLEKKQTNNAPKPKFQKFLDRRRSFRDIQGAISKIDPEIIKSLLASTGN 60

Query: 56  --GSAKSSISLPSTPKEEPITFPDVPLYRHIPKSGSENVSETAPLTIFYNGTVAVFDVHR 113
              S+  S S+PSTP+E+    P  P++  + +S +E VS T P+TIFYNG+V+VF V R
Sbjct: 61  NSDSSAKSRSVPSTPREDQPQIPISPVHASLARSSTELVSGTVPMTIFYNGSVSVFQVSR 120

Query: 114 EKAEHILKLAVEGNSKSFESNDANVASDQQQQLLETLN--------TGDLPIARRKSLQR 165
            KA  I+K+A E  SK  ES   ++ +D    L  TL          GDLPIARRKSLQR
Sbjct: 121 NKAGEIMKVANEAASKKDES---SMETDLSVILPTTLRPKLFGQNLEGDLPIARRKSLQR 177

Query: 166 FLEKRKER 173
           FLEKRKER
Sbjct: 178 FLEKRKER 185

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225425136|ref|XP_002262750.1| PREDICTED: protein TIFY 9 [Vitis vinifera] gi|296088737|emb|CBI38187.3| unnamed protein product [Vitis vinifera]

 Score =  162 bits (409), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 99/188 (52%), Positives = 135/188 (71%), Gaps = 20/188 (10%)

Query: 1   MSRATVELDFFGLENKENSSNKPQFK-KFPRQRSFRDIQGAISKINPEIIKSVIASGS-- 57
           MSRA +ELDFFG+E K+ ++ K QF+    R+RSFR +Q AISKINP+++K+VIASGS  
Sbjct: 1   MSRAAMELDFFGME-KDGATAKSQFQRFSDRRRSFRGMQSAISKINPDLLKTVIASGSVS 59

Query: 58  ----------AKSSISLPSTPKEEPITFPDVPLYRHIPKSGSENVSETAPLTIFYNGTVA 107
                     ++ S S+PSTPK +    P +P+Y  + +  S   +ET P+TIFYNGTV+
Sbjct: 60  QAPKNNPPFASRKSFSVPSTPKADQNYLPALPVYSPVFRPVS---AETTPITIFYNGTVS 116

Query: 108 VFDVHREKAEHILKLAVEGNSKSFESNDANVA--SDQQQQLLETLNTGDLPIARRKSLQR 165
           VFDV  E+ E I+KLA++G++K+ E  D+ +A   +++QQLLETLN GDLP+ARRKSL R
Sbjct: 117 VFDVSPEQIESIMKLALDGSTKTVEPADSKLAIPPNEEQQLLETLN-GDLPLARRKSLHR 175

Query: 166 FLEKRKER 173
           FLEKRKER
Sbjct: 176 FLEKRKER 183

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449517038|ref|XP_004165553.1| PREDICTED: protein TIFY 9-like [Cucumis sativus]

 Score =  161 bits (408), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 99/181 (54%), Positives = 125/181 (69%), Gaps = 20/181 (11%)

Query: 1   MSRATVELDFFGLENKENSSNKPQFKKF-PRQRSFRDIQGAISKINPEIIKSVIASGSAK 59
           M+RATVELDFFGLE +  +S+K QF     R+RSFR I  AISKI+P+++KSVI S    
Sbjct: 1   MARATVELDFFGLEKE--ASSKSQFHSLLHRKRSFRGIHNAISKIDPQLLKSVIGS---- 54

Query: 60  SSISLPSTPKE-------EPITFPDVPLYRHIPKSGSENVSETAPLTIFYNGTVAVFDVH 112
           +SISLP TP+         P+     PLYR    + SE++  T+ +TIFYNGTVAVFDV 
Sbjct: 55  ASISLPPTPEAAANHNVLSPLPL-YTPLYR---PTASESLQHTSQMTIFYNGTVAVFDVP 110

Query: 113 REKAEHILKLAVEGNSKSFESNDANVASDQQQQLLETLNTGDLPIARRKSLQRFLEKRKE 172
           R+KAE+ILKL  EG ++      A  ++D QQ LL +L+ GDLPIAR+KSLQRFLEKRKE
Sbjct: 111 RDKAENILKLVAEGKAEG-NPTVAIPSTDHQQHLLASLD-GDLPIARKKSLQRFLEKRKE 168

Query: 173 R 173
           R
Sbjct: 169 R 169

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449445778|ref|XP_004140649.1| PREDICTED: protein TIFY 9-like [Cucumis sativus]

 Score =  161 bits (407), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 99/181 (54%), Positives = 125/181 (69%), Gaps = 20/181 (11%)

Query: 1   MSRATVELDFFGLENKENSSNKPQFKKF-PRQRSFRDIQGAISKINPEIIKSVIASGSAK 59
           M+RATVELDFFGLE +  +S+K QF     R+RSFR I  AISKI+P+++KSVI S    
Sbjct: 1   MARATVELDFFGLEKE--ASSKSQFHSLLHRKRSFRGIHNAISKIDPQLLKSVIGS---- 54

Query: 60  SSISLPSTPKE-------EPITFPDVPLYRHIPKSGSENVSETAPLTIFYNGTVAVFDVH 112
           +SISLP TP+         P+     PLYR    + SE++  T+ +TIFYNGTVAVFDV 
Sbjct: 55  ASISLPPTPEAAANHNVLSPLPL-YTPLYR---PTASESLQHTSQMTIFYNGTVAVFDVP 110

Query: 113 REKAEHILKLAVEGNSKSFESNDANVASDQQQQLLETLNTGDLPIARRKSLQRFLEKRKE 172
           R+KAE+ILKL  EG ++      A  ++D QQ LL +L+ GDLPIAR+KSLQRFLEKRKE
Sbjct: 111 RDKAENILKLVAEGKAEG-NPTVAIPSTDHQQHLLASLD-GDLPIARKKSLQRFLEKRKE 168

Query: 173 R 173
           R
Sbjct: 169 R 169

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	173
TAIR|locus:2183921	197	JAZ10 "jasmonate-zim-domain pr	0.994	0.873	0.553	1.2e-40
TAIR|locus:2098179	238	JAZ11 "jasmonate-zim-domain pr	0.537	0.390	0.336	1.7e-08
TAIR|locus:2088530	352	JAZ3 "jasmonate-zim-domain pro	0.248	0.122	0.454	1.4e-05

TAIR|locus:2183921 JAZ10 "jasmonate-zim-domain protein 10" [Arabidopsis thaliana (taxid:3702)]

 Score = 432 (157.1 bits), Expect = 1.2e-40, P = 1.2e-40
 Identities = 103/186 (55%), Positives = 132/186 (70%)

Query:     1 MSRATVELDFFGLENKE-NSSNKPQFKKF-PRQRSFRDIQGAISKINPEIIKSVIAS--- 55
             MS+AT+ELDF GLE K+ N++ KP+F+KF  R+RSFRDIQGAISKI+PEIIKS++AS   
Sbjct:     1 MSKATIELDFLGLEKKQTNNAPKPKFQKFLDRRRSFRDIQGAISKIDPEIIKSLLASTGN 60

Query:    56 ---GSAKSSISLPSTPKEEPITFPDVPLYRHIPKSGSENVSETAPLTIFYNGTVAVFDVH 112
                 SAKS  S+PSTP+E+    P  P++  + +S +E VS T P+TIFYNG+V+VF V 
Sbjct:    61 NSDSSAKSR-SVPSTPREDQPQIPISPVHASLARSSTELVSGTVPMTIFYNGSVSVFQVS 119

Query:   113 REKAEHILKLAVEGNSKSFESN---DANVA--SDQQQQLLETLNTGDLPIARRKSLQRFL 167
             R KA  I+K+A E  SK  ES+   D +V   +  + +L      GDLPIARRKSLQRFL
Sbjct:   120 RNKAGEIMKVANEAASKKDESSMETDLSVILPTTLRPKLFGQNLEGDLPIARRKSLQRFL 179

Query:   168 EKRKER 173
             EKRKER
Sbjct:   180 EKRKER 185

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP;RCA;IMP

GO:0009611 "response to wounding" evidence=IEP;RCA;IMP

GO:0009733 "response to auxin stimulus" evidence=RCA;IMP

GO:0009751 "response to salicylic acid stimulus" evidence=IMP

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:2000022 "regulation of jasmonic acid mediated signaling pathway" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0010112 "regulation of systemic acquired resistance" evidence=IEP

GO:0007165 "signal transduction" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009620 "response to fungus" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

TAIR|locus:2098179 JAZ11 "jasmonate-zim-domain protein 11" [Arabidopsis thaliana (taxid:3702)]

 Score = 131 (51.2 bits), Expect = 1.7e-08, P = 1.7e-08
 Identities = 33/98 (33%), Positives = 54/98 (55%)

Query:    77 DVPLYRHIPKSGSENVSETAPLTIFYNGTVAVFD-VHREKAEHILKLAVEGNSKSFESND 135
             D+ + R I ++ S     +  LTI + G+  VF+ V  +K + I+++A  G     ++ +
Sbjct:    25 DLLVERSIHEARSTEPDASTQLTIIFGGSCRVFNGVPAQKVQEIIRIAFAGK----QTKN 80

Query:   136 ANVASDQQQQLLETLNTGDLPIARRKSLQRFLEKRKER 173
                 +    + L      DLPIARR+SLQRFLEKR++R
Sbjct:    81 VTGINPALNRALSFSTVADLPIARRRSLQRFLEKRRDR 118

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2088530 JAZ3 "jasmonate-zim-domain protein 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 86 (35.3 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
 Identities = 20/44 (45%), Positives = 29/44 (65%)

Query:    86 KSGSENVSETAPLTIFYNGTVAVFD-VHREKAEHILKLAVEGNS 128
             +S S+ +   A LTIFY G+V V+D +  EKA+ I+ LA  G+S
Sbjct:   167 RSSSKPIGSPAQLTIFYAGSVCVYDDISPEKAKAIMLLAGNGSS 210

GO:0005634 "nucleus" evidence=ISM

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0042802 "identical protein binding" evidence=IPI

GO:0031347 "regulation of defense response" evidence=IMP

GO:0009611 "response to wounding" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q93ZM9	TIF9_ARATH	No assigned EC number	0.5425	0.9826	0.8629	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_Genewise1_v1.C_LG_III2193	hypothetical protein (200 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	estExt_fgenesh4_pm.C_1180004	hypothetical protein (631 aa)					•	•			0.809
	grail3.0029018401	hypothetical protein (638 aa)					•	•			0.809
	FBL9	f-box family protein (573 aa)						•			0.800

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	173
pfam06200	36	pfam06200, tify, tify domain	8e-09
pfam09425	27	pfam09425, CCT_2, Divergent CCT motif	7e-07
smart00979	36	smart00979, TIFY, This short possible domain is fo	8e-07

>gnl|CDD|203405 pfam06200, tify, tify domain

 Score = 48.6 bits (117), Expect = 8e-09
 Identities = 19/32 (59%), Positives = 24/32 (75%), Gaps = 1/32 (3%)

Query: 93  SETAPLTIFYNGTVAVFD-VHREKAEHILKLA 123
           +E+A LTIFY G V VFD V  EKA+ I++LA
Sbjct: 3   AESAQLTIFYGGQVCVFDDVPPEKAQEIMRLA 34

This short possible domain is found in a variety of plant transcription factors that contain GATA domains as well as other motifs. Although previously known as the Zim domain this is now called the tify domain after its most conserved amino acids. TIFY proteins can be further classified into two groups depending on the presence (group I) or absence (group II) of a C2C2-GATA domain. Functional annotation of these proteins is still poor, but several screens revealed a link between TIFY proteins of group II and jasmonic acid-related stress response. Length = 36

>gnl|CDD|117965 pfam09425, CCT_2, Divergent CCT motif

 Score = 43.4 bits (103), Expect = 7e-07
 Identities = 15/18 (83%), Positives = 17/18 (94%)

Query: 156 PIARRKSLQRFLEKRKER 173
           PIAR+ SLQRFLEKRK+R
Sbjct: 1   PIARKASLQRFLEKRKDR 18

This short motif is found in a number of plant proteins. It appears to be related to the N-terminal half of the CCT motif. The CCT motif is about 45 amino acids long and contains a putative nuclear localisation signal within the second half of the CCT motif. Length = 27

>gnl|CDD|198047 smart00979, TIFY, This short possible domain is found in a variety of plant transcription factors that contain GATA domains as well as other motifs

 Score = 43.4 bits (103), Expect = 8e-07
 Identities = 17/33 (51%), Positives = 21/33 (63%), Gaps = 1/33 (3%)

Query: 92  VSETAPLTIFYNGTVAVFD-VHREKAEHILKLA 123
              +  LTIFY G+V VFD V  EKA+ I+ LA
Sbjct: 2   PEGSQQLTIFYGGSVCVFDDVPPEKAQEIMSLA 34

Although previously known as the Zim domain this is now called the tify domain after its most conserved amino acids. TIFY proteins can be further classified into two groups depending on the presence (group I) or absence (group II) of a C2C2-GATA domain. Functional annotation of these proteins is still poor, but several screens revealed a link between TIFY proteins of group II and jasmonic acid-related stress response. Length = 36

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	173
PF06200	36	tify: tify domain; InterPro: IPR010399 The tify do	99.73
PF09425	27	CCT_2: Divergent CCT motif; InterPro: IPR018467 Th	99.26
PF06203	45	CCT: CCT motif; InterPro: IPR010402 The CCT (CONST	91.37

>PF06200 tify: tify domain; InterPro: IPR010399 The tify domain is a 36-amino acid domain only found among Embryophyta (land plants)

Probab=99.73  E-value=4.4e-18  Score=108.17  Aligned_cols=34  Identities=56%  Similarity=0.797  Sum_probs=31.4

Q ss_pred             CCCCCceeEEECcEEEEEe-CCHHHHHHHHHHHhc
Q 030695           92 VSETAPLTIFYNGTVAVFD-VHREKAEHILKLAVE  125 (173)
Q Consensus        92 ~~~t~qLTIFY~G~V~VfD-v~~~KA~~Im~lA~~  125 (173)
                      .++++||||||+|+|+||| ||+|||++||.||++
T Consensus         2 ~~~~~qLTIfY~G~V~Vfd~v~~~Ka~~im~lA~r   36 (36)
T PF06200_consen    2 SPETAQLTIFYGGQVCVFDDVPPDKAQEIMLLASR   36 (36)
T ss_pred             CCCCCcEEEEECCEEEEeCCCCHHHHHHHHHHhcC
Confidence            3578999999999999998 999999999999974

It has been named after the most conserved amino acid pattern (TIF[F/Y]XG) it contains, but was previously known as the Zim domain. As the use of uppercase characters (TIFY) might imply that the domain is fully conserved across proteins, a lowercase lettering has been chosen in an attempt to highlight the reality of its natural variability. Based on the domain architecture, tify domain containing proteins can be classified into two groups. Group I is formed by proteins possessing a CCT (CONSTANS, CO-like, and TOC1) domain and a GATA-type zinc finger in addition to the tify domain. Group II contains proteins characterised by the tify domain but lacking a GATA-type zinc finger. Tify domain containing proteins might be involved in developmental processes and some of them have features that are characteristic for transcription factors: a nuclear localisation and the presence of a putative DNA-binding domain []. Some proteins known to contain a tify domain include: Arabidopsis thaliana Zinc-finger protein expressed in Inflorescence Meristem (ZIM), a putative transcription factor involved in inflorescence and flower development [, ]. A. thaliana ZIM-like proteins (ZML) []. A. thaliana PEAPOD1 and PEAPOD2 (PPD1 and PPD2) [].

>PF09425 CCT_2: Divergent CCT motif; InterPro: IPR018467 The short CCT (CO, COL, TOC1) motif is found in a number of plant proteins, including Constans (CO), Constans-like (COL) and TOC1

Probab=99.26  E-value=1.7e-12  Score=78.02  Aligned_cols=18  Identities=83%  Similarity=1.252  Sum_probs=10.0

Q ss_pred             chHHHHHhHHHHHhhcCC
Q 030695          156 PIARRKSLQRFLEKRKER  173 (173)
Q Consensus       156 PiARKaSLqRFLEKRKeR  173 (173)
                      |||||+||||||||||||
T Consensus         1 P~aRK~SLqRFLeKRK~R   18 (27)
T PF09425_consen    1 PIARKASLQRFLEKRKDR   18 (27)
T ss_dssp             -----HHHHHHHHHH---
T ss_pred             CchHHHHHHHHHHHHHHh
Confidence            799999999999999998

The CCT motif is about 45 amino acids long and contains a putative nuclear localisation signal within the second half of the CCT motif []. The CCT motif is found in the Arabidopsis circadian rhythm protein TOC1, an autoregulatory response regulator homologue the controls the photoperiodic flowering through its clock function []. ; GO: 0005515 protein binding; PDB: 3OGK_V 3OGL_S 3OGM_W.

>PF06203 CCT: CCT motif; InterPro: IPR010402 The CCT (CONSTANS, CO-like, and TOC1) domain is a highly conserved basic module of ~43 amino acids, which is found near the C terminus of plant proteins often involved in light signal transduction

Probab=91.37  E-value=0.088  Score=35.12  Aligned_cols=15  Identities=60%  Similarity=0.900  Sum_probs=13.5

Q ss_pred             HHHHhHHHHHhhcCC
Q 030695          159 RRKSLQRFLEKRKER  173 (173)
Q Consensus       159 RKaSLqRFLEKRKeR  173 (173)
                      |.++|+||+|||+.|
T Consensus         1 R~~~l~Ry~~Kr~~R   15 (45)
T PF06203_consen    1 REEKLQRYREKRKRR   15 (45)
T ss_pred             CHHHHHHHHHHHHhh
Confidence            678999999999976

The CCT domain is found in association with other domains, such as the B-box zinc finger, the GATA-type zinc finger, the ZIM motif or the response regulatory domain. The CCT domain contains a putative nuclear localisation signal within the second half of the CCT motif and has been shown to be involved in nuclear localization and probably also has a role in protein-protein interaction [].; GO: 0005515 protein binding

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	173
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-06
3ogl_Q	26	JAZ1 incomplete degron peptide; leucine-rich repea	1e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.2 bits (106), Expect = 4e-06
 Identities = 26/212 (12%), Positives = 64/212 (30%), Gaps = 75/212 (35%)

Query: 14  ENKENSSNKPQ-FKKF--PRQRSFRDIQGAISKINPE--II--------KSVIASGSAKS 60
           E ++   N  Q F K+   R + +  ++ A+ ++ P   ++        K+ +A     S
Sbjct: 114 EQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLS 173

Query: 61  S------------ISLPSTPKEEPITFPDVPLYRHIPKSGSENVSETAPLTIFYN----- 103
                        ++L +    E +      L   I  + +     ++ + +  +     
Sbjct: 174 YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE 233

Query: 104 -----------------------GTVAVFDVH-------REK-------AEHILKLAVEG 126
                                       F++        R K       A     ++++ 
Sbjct: 234 LRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDH 293

Query: 127 NSKSFESNDANVASDQQQQLLETLNT--GDLP 156
           +S +   ++       +  LL+ L+    DLP
Sbjct: 294 HSMTLTPDEV------KSLLLKYLDCRPQDLP 319

>3ogl_Q JAZ1 incomplete degron peptide; leucine-rich repeats, ubiquitin ligase, SCF, protein binding; HET: 7JA; 3.18A {Arabidopsis thaliana} PDB: 3ogm_Q* Length = 26

 Score = 37.0 bits (85), Expect = 1e-04
 Identities = 16/20 (80%), Positives = 18/20 (90%)

Query: 154 DLPIARRKSLQRFLEKRKER 173
           +LPIARR SL RFLEKRK+R
Sbjct: 1   ELPIARRASLHRFLEKRKDR 20

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	173
3ogl_Q	21	JAZ1 incomplete degron peptide; leucine-rich repea	99.45
3ogk_Q	22	JAZ1 incomplete degron peptide; leucine rich repea	98.87
2e29_A	92	ATP-dependent RNA helicase DDX50; ATP binding, hyd	83.56

>3ogl_Q JAZ1 incomplete degron peptide; leucine-rich repeats, ubiquitin ligase, SCF, protein binding; HET: 7JA; 3.18A {Arabidopsis thaliana} PDB: 3ogm_Q*

Probab=99.45  E-value=2.4e-14  Score=80.66  Aligned_cols=20  Identities=80%  Similarity=1.247  Sum_probs=19.4

Q ss_pred             CcchHHHHHhHHHHHhhcCC
Q 030695          154 DLPIARRKSLQRFLEKRKER  173 (173)
Q Consensus       154 dlPiARKaSLqRFLEKRKeR  173 (173)
                      |||||||+||||||||||+|
T Consensus         1 dlp~aRk~SLqRFleKRk~R   20 (21)
T 3ogl_Q            1 ELPIARRASLHRFLEKRKDR   20 (26)
T ss_pred             CcchhHHHHHHHHHHHhhcc
Confidence            79999999999999999998

>3ogk_Q JAZ1 incomplete degron peptide; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana}

Probab=98.87  E-value=2.4e-10  Score=65.04  Aligned_cols=15  Identities=80%  Similarity=1.203  Sum_probs=14.3

Q ss_pred             HHHHhHHHHHhhcCC
Q 030695          159 RRKSLQRFLEKRKER  173 (173)
Q Consensus       159 RKaSLqRFLEKRKeR  173 (173)
                      ||+||||||||||||
T Consensus         1 Rk~SLqRFleKRk~R   15 (22)
T 3ogk_Q            1 RRASLHRFLEKRKDR   15 (26)
T ss_pred             CchhHHHHHHHHHHH
Confidence            799999999999998

>2e29_A ATP-dependent RNA helicase DDX50; ATP binding, hydrolase, nuclear protein, nucleotide-binding, RNA-binding, GUCT domain, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.5

Probab=83.56  E-value=0.43  Score=34.62  Aligned_cols=30  Identities=13%  Similarity=0.195  Sum_probs=26.6

Q ss_pred             CCCceeEEECcEEEEEeCCHHHHHHHHHHH
Q 030695           94 ETAPLTIFYNGTVAVFDVHREKAEHILKLA  123 (173)
Q Consensus        94 ~t~qLTIFY~G~V~VfDv~~~KA~~Im~lA  123 (173)
                      .-..||+.=++.-+|||||.|.+++|+...
T Consensus        52 ~v~~m~l~~d~~GavFDvP~e~~~~~~~~~   81 (92)
T 2e29_A           52 QITRMCLLKGNMGVCFDVPTTESERLQAEW   81 (92)
T ss_dssp             TCEEEEECTTSSEEEEEEEHHHHHHHHHHC
T ss_pred             hhCeEEEecCCCEEEEECcHHHHHHHHhhC
Confidence            446899999999999999999999999653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00