Citrus Sinensis ID: 030701

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170---
Protein Sequence
MASIPCITASIHFVSKPSNSQSSCTKFSSQFLGTKNNLKCFRPSRIGPSNGSRAQCWFKFGKNGVDAENAGIYGSQKRDDFDRDDVEQYFNYMGMLAVEGTYDKMEALLSQNIHPVDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAPSEEIKDLILNFSVQKA
Secondary Structure (PSIPRED)
cccccccccHHHccccccccccccccccccccccccccccccccccccccccccEEEEEccccccccccccccccccccccccccHHHHHHHHHHHHHcccHHHHHHHHHccccHHHHHHHHHHHcccHHHHHHHHHccccccccccccccHHHccccHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccccEcccEEEccccccccccccccHHHccccccccEEccccccccccccEEEEEEEcccccccccccEEcccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHcccccHHHHHHHHHHcccccHHHHHHHccccccccccccccHHHHcccHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
masipcitasihfvskpsnsqssctkfssqflgtknnlkcfrpsrigpsngsraQCWFKfgkngvdaenagiygsqkrddfdrddVEQYFNYMGMLAVEGTYDKMEALLSQNIHPVDILLMLAASEGDKPKIEELLRAGasytvkdadgrtalerapseeIKDLILNFSVQKA
Flexible Loop (DISEMBL)
MASIPCITASIhfvskpsnsqsSCTKFSSQFLGTKNNLKCFRPSRIGPSNGSRAQCWFKFGKNGVDAENAgiygsqkrddfdRDDVEQYFNYMGMLAVEGTYDKMEALLSQNIHPVDILLMLAASEGDKPKIEELLRAGasytvkdadgrtalerapseeikdlilnfsvqka
Low Complexity Region (SEG)
MASIPCITASIHFVSKPSNSQSSCTKFSSQFLGTKNNLKCFRPSRIGPSNGSRAQCWFKFGKNGVDAENAGIYGSQKRDDFDRDDVEQYFNYMGMLAVEGTYDKMEALLSQNIHPVDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAPSEEIKDLILNFSVQKA
Disordered region (IsUnstruct)
*****CITASIHF*****************FLGTKNNLKCFR**********RAQCWFKFGKNGVDAENAGIYGSQKRDDFDRDDVEQYFNYMGMLAVEGTYDKMEALLSQNIHPVDILLMLAAS**********L*************************************
Disordered Region (DISOPRED)
****P**TASI****************************************SRAQCWFKFGKNGVDAE*********R*DFDRDDVEQYFNYMGMLAVEGTYDKMEALLSQNIHPVDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAPSEEIKDLILNFSVQ**
Disordered Region (DISEMBL)
MASIPCITASIHFV*************SSQFLGTKNNLKCFRPSRIGPSNGSRAQCWFKFGKNGVDAENAGIYGSQKRDDFDRDDVEQYFNYMGMLAVEGTYDKMEALLSQNIHPVDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAPSEEIKDLILNFSVQKA
Disordered Region (DISPRO)
**SIPCITASIHFVSK****************GTKNNLKCFRPSRIGPSNGSRAQCWFKFGKNGVDAE******SQKRDDFDRDDVEQYFNYMGMLAVEGTYDKMEALLSQNIHPVDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAPSEEIKDLILNFSVQ**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MASIPCITASIHFVSKPSNSQSSCTKFSSQFLGTKNNLKCFRPSRIGPSNGSRAQCWFKFGKNGVDAENAGIYGSQKRDDFDRDDVEQYFNYMGMLAVEGTYDKMEALLSQNIHPVDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAPSEEIKDLILNFSVQKA
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	173	2.2.26 [Sep-21-2011]
Q8VY88	175	Protein LHCP TRANSLOCATIO	yes	no	0.826	0.817	0.818	2e-66
A3BKF2	172	Protein LHCP TRANSLOCATIO	yes	no	0.953	0.959	0.597	1e-47
A2YLX7	172	Protein LHCP TRANSLOCATIO	N/A	no	0.953	0.959	0.597	1e-47

>sp|Q8VY88|LTD_ARATH Protein LHCP TRANSLOCATION DEFECT OS=Arabidopsis thaliana GN=LTD PE=1 SV=1

 Score =  251 bits (641), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 117/143 (81%), Positives = 129/143 (90%)

Query: 31  FLGTKNNLKCFRPSRIGPSNGSRAQCWFKFGKNGVDAENAGIYGSQKRDDFDRDDVEQYF 90
           FLGT+N     RP+R+GPSNGSR  CWFKFGKNGVDAENAGIYGSQ RDDFDRDDVEQYF
Sbjct: 33  FLGTRNLKLRIRPARLGPSNGSRTTCWFKFGKNGVDAENAGIYGSQSRDDFDRDDVEQYF 92

Query: 91  NYMGMLAVEGTYDKMEALLSQNIHPVDILLMLAASEGDKPKIEELLRAGASYTVKDADGR 150
           NYMGMLAVEGTY KMEALL+ NIHPVDILLMLAA+EGD+PKIEELL+AGA Y+VKDADGR
Sbjct: 93  NYMGMLAVEGTYSKMEALLNLNIHPVDILLMLAATEGDRPKIEELLKAGADYSVKDADGR 152

Query: 151 TALERAPSEEIKDLILNFSVQKA 173
           TA++RA SEEI+DLIL +S QKA
Sbjct: 153 TAIDRANSEEIRDLILGYSTQKA 175

Involved in the import of light-harvesting complex proteins (LHCP) and subsequent routing of these proteins to the chloroplast signal recognition particle (SRP) pathway.
Arabidopsis thaliana (taxid: 3702)

>sp|A3BKF2|LTD_ORYSJ Protein LHCP TRANSLOCATION DEFECT OS=Oryza sativa subsp. japonica GN=LTD PE=2 SV=1

 Score =  188 bits (478), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 107/179 (59%), Positives = 122/179 (68%), Gaps = 14/179 (7%)

Query: 1   MASIPCITASIHFVSKPSNSQSSCTKFSSQFLGTKNNLKCFRPSRIGP----SNGSRA-- 54
           MASIPC      F      S +S    + +       L   RPSR+      S   R   
Sbjct: 1   MASIPCT-----FQLSARASSASAAAAARRSPRAAARLGWLRPSRLSAVVPASESGRVGP 55

Query: 55  QCWFKFGKNGVDAENAGIYGSQKRDDFDRDDVEQYFNYMGMLAVEGTYDKMEALLSQNIH 114
            C+FKFG    DAE AGIYGSQ RDDFDRDDVEQYFNYMGMLAVEGTYDKMEALL+Q+IH
Sbjct: 56  TCFFKFGNK--DAEGAGIYGSQGRDDFDRDDVEQYFNYMGMLAVEGTYDKMEALLNQDIH 113

Query: 115 PVDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAPSEEIKDLILNFSVQKA 173
           PVDILLMLAASEGDKPK+EELLRAGA Y VKD DGRTAL+RA +++ ++ IL F+   A
Sbjct: 114 PVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTALDRA-ADDTREFILGFAATLA 171

Involved in the import of light-harvesting complex proteins (LHCP) and subsequent routing of these proteins to the chloroplast signal recognition particle (SRP) pathway.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A2YLX7|LTD_ORYSI Protein LHCP TRANSLOCATION DEFECT OS=Oryza sativa subsp. indica GN=LTD PE=3 SV=1

 Score =  188 bits (478), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 107/179 (59%), Positives = 122/179 (68%), Gaps = 14/179 (7%)

Query: 1   MASIPCITASIHFVSKPSNSQSSCTKFSSQFLGTKNNLKCFRPSRIGP----SNGSRA-- 54
           MASIPC      F      S +S    + +       L   RPSR+      S   R   
Sbjct: 1   MASIPCT-----FQLSARASSASAAAAARRSPRAAARLGWLRPSRLSAVVPASESGRVGP 55

Query: 55  QCWFKFGKNGVDAENAGIYGSQKRDDFDRDDVEQYFNYMGMLAVEGTYDKMEALLSQNIH 114
            C+FKFG    DAE AGIYGSQ RDDFDRDDVEQYFNYMGMLAVEGTYDKMEALL+Q+IH
Sbjct: 56  TCFFKFGNK--DAEGAGIYGSQGRDDFDRDDVEQYFNYMGMLAVEGTYDKMEALLNQDIH 113

Query: 115 PVDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAPSEEIKDLILNFSVQKA 173
           PVDILLMLAASEGDKPK+EELLRAGA Y VKD DGRTAL+RA +++ ++ IL F+   A
Sbjct: 114 PVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTALDRA-ADDTREFILGFAATLA 171

Involved in the import of light-harvesting complex proteins (LHCP) and subsequent routing of these proteins to the chloroplast signal recognition particle (SRP) pathway.

Oryza sativa subsp. indica (taxid: 39946)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	173
225461044	172	PREDICTED: protein LHCP TRANSLOCATION DE	0.994	1.0	0.786	2e-73
147819482	172	hypothetical protein VITISV_041274 [Viti	0.994	1.0	0.786	5e-73
255563993	175	conserved hypothetical protein [Ricinus	0.994	0.982	0.75	3e-70
224126381	171	predicted protein [Populus trichocarpa]	0.988	1.0	0.768	7e-70
118484252	171	unknown [Populus trichocarpa]	0.988	1.0	0.763	5e-69
297793645	177	hypothetical protein ARALYDRAFT_919322 [	0.901	0.881	0.788	4e-67
351725591	181	uncharacterized protein LOC100500557 [Gl	0.994	0.950	0.708	1e-66
351723883	177	uncharacterized protein LOC100499940 [Gl	0.988	0.966	0.726	6e-65
18403267	175	Ankyrin repeat family protein [Arabidops	0.826	0.817	0.818	7e-65
12321788	257	unknown protein [Arabidopsis thaliana]	0.826	0.556	0.818	1e-64

>gi|225461044|ref|XP_002281441.1| PREDICTED: protein LHCP TRANSLOCATION DEFECT [Vitis vinifera] gi|297735982|emb|CBI23956.3| unnamed protein product [Vitis vinifera]

 Score =  279 bits (714), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 136/173 (78%), Positives = 146/173 (84%), Gaps = 1/173 (0%)

Query: 1   MASIPCITASIHFVSKPSNSQSSCTKFSSQFLGTKNNLKCFRPSRIGPSNGSRAQCWFKF 60
           MASIPC T  + F SKP  S S+   F+SQ LG    L    P+R+GPSNGSRA CWF+F
Sbjct: 1   MASIPC-TTHLLFTSKPQISPSNPPIFTSQLLGIPRKLSWSTPTRLGPSNGSRATCWFRF 59

Query: 61  GKNGVDAENAGIYGSQKRDDFDRDDVEQYFNYMGMLAVEGTYDKMEALLSQNIHPVDILL 120
           G  GVDAE AGIYGSQ RDDFDRDDVEQYFNYMGMLAVEGTYDKMEALLSQNIHPVDILL
Sbjct: 60  GNRGVDAEGAGIYGSQTRDDFDRDDVEQYFNYMGMLAVEGTYDKMEALLSQNIHPVDILL 119

Query: 121 MLAASEGDKPKIEELLRAGASYTVKDADGRTALERAPSEEIKDLILNFSVQKA 173
           M+AASEGD+PKIEELLRAGASYTVKDADGRTALERA ++EIKDLILNFS QKA
Sbjct: 120 MMAASEGDQPKIEELLRAGASYTVKDADGRTALERAANDEIKDLILNFSTQKA 172

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147819482|emb|CAN65357.1| hypothetical protein VITISV_041274 [Vitis vinifera]

 Score =  278 bits (712), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 136/173 (78%), Positives = 146/173 (84%), Gaps = 1/173 (0%)

Query: 1   MASIPCITASIHFVSKPSNSQSSCTKFSSQFLGTKNNLKCFRPSRIGPSNGSRAQCWFKF 60
           MASIPC T  + F SKP  S S+   F+SQ LG    L    P+R+GPSNGSRA CWF+F
Sbjct: 1   MASIPC-TTHLLFTSKPQISPSNPPIFTSQXLGIPRKLSWSTPTRLGPSNGSRATCWFRF 59

Query: 61  GKNGVDAENAGIYGSQKRDDFDRDDVEQYFNYMGMLAVEGTYDKMEALLSQNIHPVDILL 120
           G  GVDAE AGIYGSQ RDDFDRDDVEQYFNYMGMLAVEGTYDKMEALLSQNIHPVDILL
Sbjct: 60  GNRGVDAEGAGIYGSQTRDDFDRDDVEQYFNYMGMLAVEGTYDKMEALLSQNIHPVDILL 119

Query: 121 MLAASEGDKPKIEELLRAGASYTVKDADGRTALERAPSEEIKDLILNFSVQKA 173
           M+AASEGD+PKIEELLRAGASYTVKDADGRTALERA ++EIKDLILNFS QKA
Sbjct: 120 MMAASEGDQPKIEELLRAGASYTVKDADGRTALERAANDEIKDLILNFSTQKA 172

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255563993|ref|XP_002522996.1| conserved hypothetical protein [Ricinus communis] gi|223537808|gb|EEF39426.1| conserved hypothetical protein [Ricinus communis]

 Score =  269 bits (687), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 132/176 (75%), Positives = 146/176 (82%), Gaps = 4/176 (2%)

Query: 1   MASIP---CITASIHFVSKPSNSQSSCTKFSSQFLGTKNNLKCFRPSRIGPSNGSRAQCW 57
           MASIP   C   ++    KP  + +    FS+ FLGTK+ +   RP RIGPSNGSR +CW
Sbjct: 1   MASIPSSSCTAHTLPITCKPQKTATFLPNFSTPFLGTKSKVCLVRPCRIGPSNGSRVKCW 60

Query: 58  FKFGKNGVDAENAGIYGSQKRDDFDRDDVEQYFNYMGMLAVEGTYDKMEALLSQNIHPVD 117
           FKFGKNGVDAE AGIYGSQ RDDFDRDDVEQYFNYMGMLAVEGTYDKMEALLSQ+IHPVD
Sbjct: 61  FKFGKNGVDAEGAGIYGSQSRDDFDRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVD 120

Query: 118 ILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAPSEEIKDLILNFSVQKA 173
           ILLMLAASEGDKPKIEELLRAGASY VKDADGRTAL+RA +EEI++ I+ FSVQKA
Sbjct: 121 ILLMLAASEGDKPKIEELLRAGASYNVKDADGRTALDRA-NEEIREFIVGFSVQKA 175

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224126381|ref|XP_002319824.1| predicted protein [Populus trichocarpa] gi|222858200|gb|EEE95747.1| predicted protein [Populus trichocarpa]

 Score =  268 bits (685), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 133/173 (76%), Positives = 144/173 (83%), Gaps = 2/173 (1%)

Query: 1   MASIPCITASIHFVSKPSNSQSSCTKFSSQFLGTKNNLKCFRPSRIGPSNGSRAQCWFKF 60
           MASI   T  +   S P +SQ    K +SQFLG ++N+   RP RIGPSNGSRA+CWFKF
Sbjct: 1   MASI-LSTTHLTLASNPQSSQPFLPKLNSQFLGLQSNVGWLRPCRIGPSNGSRAKCWFKF 59

Query: 61  GKNGVDAENAGIYGSQKRDDFDRDDVEQYFNYMGMLAVEGTYDKMEALLSQNIHPVDILL 120
           GKNGVDAE AGIYGSQ RDDFDRDDVEQYFNYMGMLAVEGTYDKMEALLSQNIHPVDILL
Sbjct: 60  GKNGVDAEGAGIYGSQTRDDFDRDDVEQYFNYMGMLAVEGTYDKMEALLSQNIHPVDILL 119

Query: 121 MLAASEGDKPKIEELLRAGASYTVKDADGRTALERAPSEEIKDLILNFSVQKA 173
           MLAASEGDKPKIEELLRAGA Y +KDADGRTAL+RA +EE KD IL  SV+KA
Sbjct: 120 MLAASEGDKPKIEELLRAGAGYDIKDADGRTALDRA-NEETKDFILGLSVRKA 171

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118484252|gb|ABK94006.1| unknown [Populus trichocarpa]

 Score =  265 bits (677), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 132/173 (76%), Positives = 143/173 (82%), Gaps = 2/173 (1%)

Query: 1   MASIPCITASIHFVSKPSNSQSSCTKFSSQFLGTKNNLKCFRPSRIGPSNGSRAQCWFKF 60
           MASI   T  +   S P +SQ    K +SQFLG ++N+   RP RIGPSNGSRA+CWFKF
Sbjct: 1   MASI-LSTTHLTLASNPQSSQPFLPKLNSQFLGLQSNVGWLRPCRIGPSNGSRAKCWFKF 59

Query: 61  GKNGVDAENAGIYGSQKRDDFDRDDVEQYFNYMGMLAVEGTYDKMEALLSQNIHPVDILL 120
           GKNGVDAE  GIYGSQ RDDFDRDDVEQYFNYMGMLAVEGTYDKMEALLSQNIHPVDILL
Sbjct: 60  GKNGVDAEGDGIYGSQTRDDFDRDDVEQYFNYMGMLAVEGTYDKMEALLSQNIHPVDILL 119

Query: 121 MLAASEGDKPKIEELLRAGASYTVKDADGRTALERAPSEEIKDLILNFSVQKA 173
           MLAASEGDKPKIEELLRAGA Y +KDADGRTAL+RA +EE KD IL  SV+KA
Sbjct: 120 MLAASEGDKPKIEELLRAGAVYDIKDADGRTALDRA-NEETKDFILGLSVRKA 171

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297793645|ref|XP_002864707.1| hypothetical protein ARALYDRAFT_919322 [Arabidopsis lyrata subsp. lyrata] gi|297310542|gb|EFH40966.1| hypothetical protein ARALYDRAFT_919322 [Arabidopsis lyrata subsp. lyrata]

 Score =  258 bits (660), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 123/156 (78%), Positives = 137/156 (87%)

Query: 18  SNSQSSCTKFSSQFLGTKNNLKCFRPSRIGPSNGSRAQCWFKFGKNGVDAENAGIYGSQK 77
           + S SS T  SS+FLGT+N     RP+R+GPSNGSR  CWFKFGKNGVDAENAGIYGSQ 
Sbjct: 22  TTSCSSPTLLSSRFLGTRNLKLQIRPARLGPSNGSRTTCWFKFGKNGVDAENAGIYGSQS 81

Query: 78  RDDFDRDDVEQYFNYMGMLAVEGTYDKMEALLSQNIHPVDILLMLAASEGDKPKIEELLR 137
           RDDFDRDDVEQYFNYMGMLAVEGTY KMEALLS NIHPVDILLMLAA+EGD+PKIEELL+
Sbjct: 82  RDDFDRDDVEQYFNYMGMLAVEGTYSKMEALLSLNIHPVDILLMLAATEGDRPKIEELLK 141

Query: 138 AGASYTVKDADGRTALERAPSEEIKDLILNFSVQKA 173
           AGA Y+VKDADGRTA++RA SEEI+DLIL ++ QKA
Sbjct: 142 AGADYSVKDADGRTAIDRANSEEIRDLILGYNAQKA 177

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351725591|ref|NP_001236074.1| uncharacterized protein LOC100500557 [Glycine max] gi|255630625|gb|ACU15672.1| unknown [Glycine max]

 Score =  257 bits (657), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 129/182 (70%), Positives = 146/182 (80%), Gaps = 10/182 (5%)

Query: 1   MASIPCITASIH-FVSKPSNSQS------SCTKFSSQFLGTKNNL--KCFRPSRIGPSNG 51
           MASIPCIT   H   S P+N+ +      S +  +S+FLGT+  +         IGPSNG
Sbjct: 1   MASIPCITHHHHPITSNPNNNNAFPSPHVSASNLASRFLGTRRRVGSHSLTSRIIGPSNG 60

Query: 52  SRAQCWFKFGKNGVDAENAGIYGSQKRDDFDRDDVEQYFNYMGMLAVEGTYDKMEALLSQ 111
           S++ CWF+FGKNGVDA+ AGIYGSQ RDDFDRDDVEQYFNYMGML VEGTYDKMEALLSQ
Sbjct: 61  SKSTCWFRFGKNGVDAQGAGIYGSQGRDDFDRDDVEQYFNYMGMLTVEGTYDKMEALLSQ 120

Query: 112 NIHPVDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAPSEEIKDLILNFSVQ 171
           NIHPVDILL+LAASEGDKPKIEELLRAGA Y VKDADGRTAL+RA ++EIKD ILNFSVQ
Sbjct: 121 NIHPVDILLLLAASEGDKPKIEELLRAGAKYDVKDADGRTALDRA-ADEIKDFILNFSVQ 179

Query: 172 KA 173
           +A
Sbjct: 180 RA 181

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351723883|ref|NP_001238318.1| uncharacterized protein LOC100499940 [Glycine max] gi|255627865|gb|ACU14277.1| unknown [Glycine max]

 Score =  251 bits (642), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 130/179 (72%), Positives = 144/179 (80%), Gaps = 8/179 (4%)

Query: 1   MASIPCITASIHFVSKPSNSQSS----CTKFSSQFLGTKN--NLKCFRPSRIGPSNGSRA 54
           MASI CIT      SK +N+ SS     +  +S+FLGT+    L       IGPSNGS+A
Sbjct: 1   MASISCITHH-PITSKLNNAFSSPHVSASNLASRFLGTRKRVGLHSLTSRIIGPSNGSKA 59

Query: 55  QCWFKFGKNGVDAENAGIYGSQKRDDFDRDDVEQYFNYMGMLAVEGTYDKMEALLSQNIH 114
            CWF+FGKNGVDA+ AGIYGSQ RDDFDRDDVEQYFNYMGMLAVEGTYDKMEALLSQNIH
Sbjct: 60  TCWFRFGKNGVDAKGAGIYGSQGRDDFDRDDVEQYFNYMGMLAVEGTYDKMEALLSQNIH 119

Query: 115 PVDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAPSEEIKDLILNFSVQKA 173
           PVDILL+LAASE DKPKIEELLRAGA Y VKDADGRTAL+RA ++EIKD ILNFSVQ+A
Sbjct: 120 PVDILLLLAASESDKPKIEELLRAGAKYDVKDADGRTALDRA-TDEIKDFILNFSVQRA 177

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18403267|ref|NP_564580.1| Ankyrin repeat family protein [Arabidopsis thaliana] gi|75248476|sp|Q8VY88.1|LTD_ARATH RecName: Full=Protein LHCP TRANSLOCATION DEFECT; AltName: Full=Protein GRANA-DEFICIENT CHLOROPLAST 1; Flags: Precursor gi|18252245|gb|AAL61955.1| unknown protein [Arabidopsis thaliana] gi|21386977|gb|AAM47892.1| unknown protein [Arabidopsis thaliana] gi|21553984|gb|AAM63065.1| unknown [Arabidopsis thaliana] gi|332194478|gb|AEE32599.1| Ankyrin repeat family protein [Arabidopsis thaliana]

 Score =  251 bits (641), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 117/143 (81%), Positives = 129/143 (90%)

Query: 31  FLGTKNNLKCFRPSRIGPSNGSRAQCWFKFGKNGVDAENAGIYGSQKRDDFDRDDVEQYF 90
           FLGT+N     RP+R+GPSNGSR  CWFKFGKNGVDAENAGIYGSQ RDDFDRDDVEQYF
Sbjct: 33  FLGTRNLKLRIRPARLGPSNGSRTTCWFKFGKNGVDAENAGIYGSQSRDDFDRDDVEQYF 92

Query: 91  NYMGMLAVEGTYDKMEALLSQNIHPVDILLMLAASEGDKPKIEELLRAGASYTVKDADGR 150
           NYMGMLAVEGTY KMEALL+ NIHPVDILLMLAA+EGD+PKIEELL+AGA Y+VKDADGR
Sbjct: 93  NYMGMLAVEGTYSKMEALLNLNIHPVDILLMLAATEGDRPKIEELLKAGADYSVKDADGR 152

Query: 151 TALERAPSEEIKDLILNFSVQKA 173
           TA++RA SEEI+DLIL +S QKA
Sbjct: 153 TAIDRANSEEIRDLILGYSTQKA 175

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|12321788|gb|AAG50930.1|AC079284_5 unknown protein [Arabidopsis thaliana]

 Score =  250 bits (639), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 117/143 (81%), Positives = 129/143 (90%)

Query: 31  FLGTKNNLKCFRPSRIGPSNGSRAQCWFKFGKNGVDAENAGIYGSQKRDDFDRDDVEQYF 90
           FLGT+N     RP+R+GPSNGSR  CWFKFGKNGVDAENAGIYGSQ RDDFDRDDVEQYF
Sbjct: 115 FLGTRNLKLRIRPARLGPSNGSRTTCWFKFGKNGVDAENAGIYGSQSRDDFDRDDVEQYF 174

Query: 91  NYMGMLAVEGTYDKMEALLSQNIHPVDILLMLAASEGDKPKIEELLRAGASYTVKDADGR 150
           NYMGMLAVEGTY KMEALL+ NIHPVDILLMLAA+EGD+PKIEELL+AGA Y+VKDADGR
Sbjct: 175 NYMGMLAVEGTYSKMEALLNLNIHPVDILLMLAATEGDRPKIEELLKAGADYSVKDADGR 234

Query: 151 TALERAPSEEIKDLILNFSVQKA 173
           TA++RA SEEI+DLIL +S QKA
Sbjct: 235 TAIDRANSEEIRDLILGYSTQKA 257

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	173
TAIR|locus:2036421	175	GDC1 "AT1G50900" [Arabidopsis	0.901	0.891	0.782	6.2e-62

TAIR|locus:2036421 GDC1 "AT1G50900" [Arabidopsis thaliana (taxid:3702)]

 Score = 633 (227.9 bits), Expect = 6.2e-62, P = 6.2e-62
 Identities = 122/156 (78%), Positives = 136/156 (87%)

Query:    18 SNSQSSCTKFSSQFLGTKNNLKCFRPSRIGPSNGSRAQCWFKFGKNGVDAENAGIYGSQK 77
             S + SS    SS+FLGT+N     RP+R+GPSNGSR  CWFKFGKNGVDAENAGIYGSQ 
Sbjct:    20 STTSSSPRLLSSRFLGTRNLKLRIRPARLGPSNGSRTTCWFKFGKNGVDAENAGIYGSQS 79

Query:    78 RDDFDRDDVEQYFNYMGMLAVEGTYDKMEALLSQNIHPVDILLMLAASEGDKPKIEELLR 137
             RDDFDRDDVEQYFNYMGMLAVEGTY KMEALL+ NIHPVDILLMLAA+EGD+PKIEELL+
Sbjct:    80 RDDFDRDDVEQYFNYMGMLAVEGTYSKMEALLNLNIHPVDILLMLAATEGDRPKIEELLK 139

Query:   138 AGASYTVKDADGRTALERAPSEEIKDLILNFSVQKA 173
             AGA Y+VKDADGRTA++RA SEEI+DLIL +S QKA
Sbjct:   140 AGADYSVKDADGRTAIDRANSEEIRDLILGYSTQKA 175


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.132   0.382    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      173       173   0.00097  108 3  11 22  0.43    32
                                                     31  0.48    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  584 (62 KB)
  Total size of DFA:  145 KB (2089 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  16.60u 0.12s 16.72t   Elapsed:  00:00:01
  Total cpu time:  16.60u 0.12s 16.72t   Elapsed:  00:00:01
  Start:  Mon May 20 18:26:09 2013   End:  Mon May 20 18:26:10 2013

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0080167 "response to karrikin" evidence=IEP

GO:0090391 "granum assembly" evidence=IMP

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006655 "phosphatidylglycerol biosynthetic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8VY88	LTD_ARATH	No assigned EC number	0.8181	0.8265	0.8171	yes	no
A2YLX7	LTD_ORYSI	No assigned EC number	0.5977	0.9537	0.9593	N/A	no
A3BKF2	LTD_ORYSJ	No assigned EC number	0.5977	0.9537	0.9593	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00027365001	SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (172 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00002992001	SubName- Full=Chromosome chr10 scaffold_138, whole genome shotgun sequence; (289 aa)				•			•		0.412

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	173
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	4e-07
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	4e-06
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	3e-05
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	4e-05
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	1e-04
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	5e-04

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 44.7 bits (106), Expect = 4e-07
 Identities = 15/38 (39%), Positives = 22/38 (57%)

Query: 119 LLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERA 156
            L LAA  G    ++ LL+ G    ++D+DG TAL+ A
Sbjct: 19  PLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 43.5 bits (103), Expect = 4e-06
 Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 7/78 (8%)

Query: 95  MLAVEGTYDKMEALLSQNIHPVDIL-------LMLAASEGDKPKIEELLRAGASYTVKDA 147
            LA +  + ++  LL +    V+         L LAA  G+   ++ LL+ GA    +D 
Sbjct: 45  HLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDK 104

Query: 148 DGRTALERAPSEEIKDLI 165
           DGRT L  A      +++
Sbjct: 105 DGRTPLHLAAKNGHLEVV 122

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 40.3 bits (95), Expect = 3e-05
 Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 5/67 (7%)

Query: 95  MLAVE-GTYDKMEALLSQNIHPV----DILLMLAASEGDKPKIEELLRAGASYTVKDADG 149
            LA + G  + ++ LL +         D  L LAA  G+   ++ LL  GA    KD DG
Sbjct: 2   HLAAKNGNLELVKLLLEKGADVNLGDTDTALHLAARNGNLEIVKLLLEHGADVNAKDKDG 61

Query: 150 RTALERA 156
            TAL  A
Sbjct: 62  NTALHLA 68

Length = 91

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 40.8 bits (96), Expect = 4e-05
 Identities = 17/35 (48%), Positives = 19/35 (54%)

Query: 119 LLMLAASEGDKPKIEELLRAGASYTVKDADGRTAL 153
            L LAAS G    ++ LL  GA    KD DGRT L
Sbjct: 10  PLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPL 44

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 39.7 bits (93), Expect = 1e-04
 Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 7/66 (10%)

Query: 95  MLAVE-GTYDKMEALLSQ--NIHPVD----ILLMLAASEGDKPKIEELLRAGASYTVKDA 147
            LA   G  + ++ LL    +++  D      L LAA  G    ++ LL  GA    +D 
Sbjct: 12  HLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDK 71

Query: 148 DGRTAL 153
           DG T L
Sbjct: 72  DGNTPL 77

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 39.5 bits (92), Expect = 5e-04
 Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 5/68 (7%)

Query: 104 KMEALLSQNI-----HPVDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAPS 158
            +  LL  N        +   L+  AS G+   +EELL+A     + D+ GRT L  A S
Sbjct: 508 NVGDLLGDNGGEHDDPNMASNLLTVASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAAS 567

Query: 159 EEIKDLIL 166
           +  +D +L
Sbjct: 568 KGYEDCVL 575

Length = 823

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	173
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.58
KOG4412	226	consensus 26S proteasome regulatory complex, subun	99.51
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.38
KOG4412	226	consensus 26S proteasome regulatory complex, subun	99.36
KOG0508	615	consensus Ankyrin repeat protein [General function	99.35
PHA02791	284	ankyrin-like protein; Provisional	99.33
PHA02791	284	ankyrin-like protein; Provisional	99.33
PHA02741	169	hypothetical protein; Provisional	99.33
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.33
PHA02743	166	Viral ankyrin protein; Provisional	99.3
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.3
PHA02875	413	ankyrin repeat protein; Provisional	99.29
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.29
PHA02736	154	Viral ankyrin protein; Provisional	99.28
PHA02878	477	ankyrin repeat protein; Provisional	99.27
PHA02884	300	ankyrin repeat protein; Provisional	99.24
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.24
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.22
PHA02795	437	ankyrin-like protein; Provisional	99.22
PHA02884	300	ankyrin repeat protein; Provisional	99.22
PHA02874	434	ankyrin repeat protein; Provisional	99.21
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.21
KOG0508	615	consensus Ankyrin repeat protein [General function	99.2
PHA02859	209	ankyrin repeat protein; Provisional	99.2
PHA02875	413	ankyrin repeat protein; Provisional	99.19
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.19
PHA03100	480	ankyrin repeat protein; Provisional	99.18
PHA02741	169	hypothetical protein; Provisional	99.18
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.18
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.17
PHA02859	209	ankyrin repeat protein; Provisional	99.17
PHA02946	446	ankyin-like protein; Provisional	99.16
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.15
PHA03095	471	ankyrin-like protein; Provisional	99.15
PHA02878	477	ankyrin repeat protein; Provisional	99.14
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.13
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.11
PHA03100	480	ankyrin repeat protein; Provisional	99.1
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.1
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.08
PHA03095	471	ankyrin-like protein; Provisional	99.08
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.07
KOG0514	452	consensus Ankyrin repeat protein [General function	99.06
PHA02743	166	Viral ankyrin protein; Provisional	99.06
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.04
PHA02946	446	ankyin-like protein; Provisional	99.04
PHA02874	434	ankyrin repeat protein; Provisional	99.03
PHA02876	682	ankyrin repeat protein; Provisional	99.02
PHA02798	489	ankyrin-like protein; Provisional	99.01
KOG0514	452	consensus Ankyrin repeat protein [General function	98.97
PHA02989	494	ankyrin repeat protein; Provisional	98.97
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	98.96
PHA02795	437	ankyrin-like protein; Provisional	98.96
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	98.96
PHA02989	494	ankyrin repeat protein; Provisional	98.95
PHA02876	682	ankyrin repeat protein; Provisional	98.95
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	98.91
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	98.91
PHA02917	661	ankyrin-like protein; Provisional	98.89
PHA02798	489	ankyrin-like protein; Provisional	98.89
TIGR00870	743	trp transient-receptor-potential calcium channel p	98.89
PHA02792	631	ankyrin-like protein; Provisional	98.89
PHA02917	661	ankyrin-like protein; Provisional	98.85
KOG0510	929	consensus Ankyrin repeat protein [General function	98.85
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	98.82
PHA02736	154	Viral ankyrin protein; Provisional	98.79
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	98.78
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	98.77
KOG0510	929	consensus Ankyrin repeat protein [General function	98.77
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.76
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	98.74
PHA02730	672	ankyrin-like protein; Provisional	98.73
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	98.71
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	98.69
PHA02730	672	ankyrin-like protein; Provisional	98.68
PHA02792	631	ankyrin-like protein; Provisional	98.67
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.64
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	98.63
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.62
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	98.61
PF13606	30	Ank_3: Ankyrin repeat	98.6
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	98.57
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.53
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	98.49
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	98.43
KOG0511	516	consensus Ankyrin repeat protein [General function	98.41
TIGR00870	743	trp transient-receptor-potential calcium channel p	98.38
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	98.32
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	98.32
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	98.26
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.15
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	98.15
KOG0522	560	consensus Ankyrin repeat protein [General function	98.14
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	98.13
KOG2505	591	consensus Ankyrin repeat protein [General function	97.92
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	97.87
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	97.7
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	97.69
PF13606	30	Ank_3: Ankyrin repeat	97.46
KOG0521	785	consensus Putative GTPase activating proteins (GAP	97.35
KOG0783	1267	consensus Uncharacterized conserved protein, conta	96.99
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	96.97
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.85
KOG0511	516	consensus Ankyrin repeat protein [General function	96.47
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	96.12
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	95.84
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	95.63
KOG2384	223	consensus Major histocompatibility complex protein	95.4
KOG0520	975	consensus Uncharacterized conserved protein, conta	94.88
KOG0522	560	consensus Ankyrin repeat protein [General function	94.6
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	94.51
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	93.87
KOG0521	785	consensus Putative GTPase activating proteins (GAP	93.84
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	93.04
KOG2384	223	consensus Major histocompatibility complex protein	91.91
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	91.76

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.58  E-value=1.6e-14  Score=98.93  Aligned_cols=78  Identities=28%  Similarity=0.388  Sum_probs=70.6

Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCC--CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhcC---chHHHHHHHh
Q 030701           93 MGMLAVEGTYDKMEALLSQNIHP--VDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAP---SEEIKDLILN  167 (173)
Q Consensus        93 ~~~Aa~~G~~~~v~~LL~~Ga~~--~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~---~~ei~~lLl~  167 (173)
                      +++|+..|+++++++|++.+.++  ++||||+|+..|+.+++++|++.|++++.+|.+|+||||+|+   +.+++++|.+
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~   80 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINLGNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNLEIVKLLLE   80 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTSSSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHHHHHHHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCCCCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            45699999999999999999887  479999999999999999999999999999999999999997   3789999988


Q ss_pred             hhh
Q 030701          168 FSV  170 (173)
Q Consensus       168 ~~~  170 (173)
                      +..
T Consensus        81 ~g~   83 (89)
T PF12796_consen   81 HGA   83 (89)
T ss_dssp             TTT
T ss_pred             cCC
Confidence            754

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=99.51  E-value=3.8e-14  Score=109.72  Aligned_cols=115  Identities=23%  Similarity=0.265  Sum_probs=86.5

Q ss_pred             cCccCccccCCCCcch--hhHHHhhcccCCCccccccccCCCCCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHC-CCC
Q 030701           38 LKCFRPSRIGPSNGSR--AQCWFKFGKNGVDAENAGIYGSQKRDDFDRDDVEQYFNYMGMLAVEGTYDKMEALLSQ-NIH  114 (173)
Q Consensus        38 ~~~~~~~~~~p~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~Aa~~G~~~~v~~LL~~-Ga~  114 (173)
                      |+..+|.|.+-+-+..  +..+.+  ..++           .-||+|...+.+++    +||..|+.++|+.|+.+ |++
T Consensus        36 qD~Rt~LHwa~S~g~~eiv~fLls--q~nv-----------~~ddkDdaGWtPlh----ia~s~g~~evVk~Ll~r~~ad   98 (226)
T KOG4412|consen   36 QDGRTPLHWACSFGHVEIVYFLLS--QPNV-----------KPDDKDDAGWTPLH----IAASNGNDEVVKELLNRSGAD   98 (226)
T ss_pred             ccCCceeeeeeecCchhHHHHHHh--cCCC-----------CCCCccccCCchhh----hhhhcCcHHHHHHHhcCCCCC
Confidence            4566777777555544  333333  1111           12344444444444    59999999999999998 888


Q ss_pred             C------CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhcC---chHHHHHHHhhh
Q 030701          115 P------VDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAP---SEEIKDLILNFS  169 (173)
Q Consensus       115 ~------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~---~~ei~~lLl~~~  169 (173)
                      +      +.|+||+|+..|..+++++|++.||.++++|..|.||||-|+   +-+++++|..+.
T Consensus        99 vna~tn~G~T~LHyAagK~r~eIaqlLle~ga~i~~kD~~~qtplHRAAavGklkvie~Li~~~  162 (226)
T KOG4412|consen   99 VNATTNGGQTCLHYAAGKGRLEIAQLLLEKGALIRIKDKQGQTPLHRAAAVGKLKVIEYLISQG  162 (226)
T ss_pred             cceecCCCcceehhhhcCChhhHHHHHHhcCCCCcccccccCchhHHHHhccchhhHHHHHhcC
Confidence            7      449999999999999999999999999999999999999987   367888887765

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.38  E-value=8e-13  Score=108.93  Aligned_cols=79  Identities=28%  Similarity=0.346  Sum_probs=68.9

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHCCCCC-----C-CcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhcC---chH
Q 030701           90 FNYMGMLAVEGTYDKMEALLSQNIHP-----V-DILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAP---SEE  160 (173)
Q Consensus        90 ~~~~~~Aa~~G~~~~v~~LL~~Ga~~-----~-dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~---~~e  160 (173)
                      |.++|.||+.||..+++.||.+|+.+     + |||||+|+.+||.++|+.|+...+|+|+.+..|.||||+|+   .++
T Consensus        35 fsplhwaakegh~aivemll~rgarvn~tnmgddtplhlaaahghrdivqkll~~kadvnavnehgntplhyacfwgydq  114 (448)
T KOG0195|consen   35 FSPLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAHGHRDIVQKLLSRKADVNAVNEHGNTPLHYACFWGYDQ  114 (448)
T ss_pred             cchhhhhhhcccHHHHHHHHhcccccccccCCCCcchhhhhhcccHHHHHHHHHHhcccchhhccCCCchhhhhhhcHHH
Confidence            55666699999999999999999877     3 49999999999999999999999999999999999999998   355


Q ss_pred             HHHHHHhh
Q 030701          161 IKDLILNF  168 (173)
Q Consensus       161 i~~lLl~~  168 (173)
                      |.+-|+..
T Consensus       115 iaedli~~  122 (448)
T KOG0195|consen  115 IAEDLISC  122 (448)
T ss_pred             HHHHHHhc
Confidence            55555543

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=99.36  E-value=5.7e-13  Score=103.23  Aligned_cols=75  Identities=33%  Similarity=0.399  Sum_probs=66.1

Q ss_pred             HHHcCCHHHHHHHHHC-CCCC------CCcHHHHHHHcCCHHHHHHHHHc-CCCcccccCCCCchhhhcCc---hHHHHH
Q 030701           96 LAVEGTYDKMEALLSQ-NIHP------VDILLMLAASEGDKPKIEELLRA-GASYTVKDADGRTALERAPS---EEIKDL  164 (173)
Q Consensus        96 Aa~~G~~~~v~~LL~~-Ga~~------~dTpLh~Aa~~g~~~~v~~LL~~-GAdi~~~d~~G~TpLh~A~~---~ei~~l  164 (173)
                      ||..|+.+++.+|+++ +..+      +-||||+|++.|..++|+.|+.+ |+|+|++++.|.|+||+|+.   -+|.++
T Consensus        45 a~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~advna~tn~G~T~LHyAagK~r~eIaql  124 (226)
T KOG4412|consen   45 ACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASNGNDEVVKELLNRSGADVNATTNGGQTCLHYAAGKGRLEIAQL  124 (226)
T ss_pred             eeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhhcCcHHHHHHHhcCCCCCcceecCCCcceehhhhcCChhhHHHH
Confidence            9999999999999964 3333      33999999999999999999977 99999999999999999984   689999


Q ss_pred             HHhhhh
Q 030701          165 ILNFSV  170 (173)
Q Consensus       165 Ll~~~~  170 (173)
                      |++..+
T Consensus       125 Lle~ga  130 (226)
T KOG4412|consen  125 LLEKGA  130 (226)
T ss_pred             HHhcCC
Confidence            988753

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.35  E-value=5.8e-13  Score=115.36  Aligned_cols=74  Identities=27%  Similarity=0.395  Sum_probs=52.7

Q ss_pred             HHHcCCHHHHHHHHHCCCCC------CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhcC---chHHHHHHH
Q 030701           96 LAVEGTYDKMEALLSQNIHP------VDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAP---SEEIKDLIL  166 (173)
Q Consensus        96 Aa~~G~~~~v~~LL~~Ga~~------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~---~~ei~~lLl  166 (173)
                      ||..||+++|++|++.|+|+      +.|.||+||+.||.+++++|++.|||+|.++..|.|+||.++   +-+++++|+
T Consensus       124 ACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~ykGh~~I~qyLle~gADvn~ks~kGNTALH~caEsG~vdivq~Ll  203 (615)
T KOG0508|consen  124 ACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYKGHVDIAQYLLEQGADVNAKSYKGNTALHDCAESGSVDIVQLLL  203 (615)
T ss_pred             HHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeeccCchHHHHHHHHhCCCcchhcccCchHHHhhhhcccHHHHHHHH
Confidence            77777777777777777766      447777777777777777777777777777777777777766   466777776


Q ss_pred             hhh
Q 030701          167 NFS  169 (173)
Q Consensus       167 ~~~  169 (173)
                      .++
T Consensus       204 ~~g  206 (615)
T KOG0508|consen  204 KHG  206 (615)
T ss_pred             hCC
Confidence            654

>PHA02791 ankyrin-like protein; Provisional

Probab=99.33  E-value=4.7e-12  Score=105.22  Aligned_cols=77  Identities=10%  Similarity=0.032  Sum_probs=66.7

Q ss_pred             HHHHHcCCHHHHHHHHHCCCCC-----CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCch-hhhcC---chHHHHH
Q 030701           94 GMLAVEGTYDKMEALLSQNIHP-----VDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTA-LERAP---SEEIKDL  164 (173)
Q Consensus        94 ~~Aa~~G~~~~v~~LL~~Ga~~-----~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~Tp-Lh~A~---~~ei~~l  164 (173)
                      ++|+..|+.+++++|++.+.+.     +.||||+|+..|+.+++++|+++||+++.+|..|.|| ||+|+   +.+++++
T Consensus       133 ~~Aa~~g~~eivk~LL~~~~~~~d~~~g~TpLh~Aa~~g~~eiv~lLL~~gAd~n~~d~~g~t~~L~~Aa~~~~~e~v~l  212 (284)
T PHA02791        133 YHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDLEMLQA  212 (284)
T ss_pred             HHHHHcCCHHHHHHHHhcCCcccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCChHHHHHHHcCCHHHHHH
Confidence            3499999999999999987544     4599999999999999999999999999999999987 99987   4789999


Q ss_pred             HHhhhh
Q 030701          165 ILNFSV  170 (173)
Q Consensus       165 Ll~~~~  170 (173)
                      |+.+.+
T Consensus       213 Ll~~Ga  218 (284)
T PHA02791        213 LFKYDI  218 (284)
T ss_pred             HHHCCC
Confidence            988764

>PHA02791 ankyrin-like protein; Provisional

Probab=99.33  E-value=4e-12  Score=105.70  Aligned_cols=75  Identities=15%  Similarity=0.123  Sum_probs=45.2

Q ss_pred             HHHHHcCCHHHHHHHHHCCCCC------CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCC-chhhhcC---chHHHH
Q 030701           94 GMLAVEGTYDKMEALLSQNIHP------VDILLMLAASEGDKPKIEELLRAGASYTVKDADGR-TALERAP---SEEIKD  163 (173)
Q Consensus        94 ~~Aa~~G~~~~v~~LL~~Ga~~------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~-TpLh~A~---~~ei~~  163 (173)
                      |+|+..|+.++++.|+..|+++      +.||||+|+..|+.+++++|+..|++++.++..|. ||||+|+   +.++++
T Consensus        66 h~Aa~~g~~eiV~lLL~~Gadvn~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa~~g~~eivk  145 (284)
T PHA02791         66 HQAATLEDTKIVKILLFSGMDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVS  145 (284)
T ss_pred             HHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCcHHHHHHHHcCCHHHHH
Confidence            3466666666666666666554      33666666666666666666666666666665553 5666664   245566


Q ss_pred             HHHhh
Q 030701          164 LILNF  168 (173)
Q Consensus       164 lLl~~  168 (173)
                      +|++.
T Consensus       146 ~LL~~  150 (284)
T PHA02791        146 YFLSE  150 (284)
T ss_pred             HHHhc
Confidence            65543

>PHA02741 hypothetical protein; Provisional

Probab=99.33  E-value=9.5e-12  Score=95.38  Aligned_cols=77  Identities=19%  Similarity=0.189  Sum_probs=68.7

Q ss_pred             HHHHHcCC----HHHHHHHHHCCCCC-------CCcHHHHHHHcCCHHHHHHHHH-cCCCcccccCCCCchhhhcC---c
Q 030701           94 GMLAVEGT----YDKMEALLSQNIHP-------VDILLMLAASEGDKPKIEELLR-AGASYTVKDADGRTALERAP---S  158 (173)
Q Consensus        94 ~~Aa~~G~----~~~v~~LL~~Ga~~-------~dTpLh~Aa~~g~~~~v~~LL~-~GAdi~~~d~~G~TpLh~A~---~  158 (173)
                      |+|+..|+    .+++++|++.|+++       ++||||+|+..++.+++++|+. .|++++.+|.+|+||||+|.   +
T Consensus        65 h~A~~~g~~~~~~~ii~~Ll~~gadin~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~  144 (169)
T PHA02741         65 HIAAEKHEAQLAAEIIDHLIELGADINAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNED  144 (169)
T ss_pred             HHHHHcCChHHHHHHHHHHHHcCCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCCC
Confidence            35999999    58899999999987       4499999999999999999997 59999999999999999997   4


Q ss_pred             hHHHHHHHhhhh
Q 030701          159 EEIKDLILNFSV  170 (173)
Q Consensus       159 ~ei~~lLl~~~~  170 (173)
                      .+++++|+++..
T Consensus       145 ~~iv~~L~~~~~  156 (169)
T PHA02741        145 VAMMQILREIVA  156 (169)
T ss_pred             HHHHHHHHHHHH
Confidence            689999998864

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.33  E-value=1.3e-12  Score=83.02  Aligned_cols=49  Identities=35%  Similarity=0.392  Sum_probs=29.6

Q ss_pred             HHHCC-CCC------CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhc
Q 030701          108 LLSQN-IHP------VDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERA  156 (173)
Q Consensus       108 LL~~G-a~~------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A  156 (173)
                      ||+.| .++      +.||||+|+..|+.+++++|++.|+|++.+|.+|+||||+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            45666 444      55999999999999999999999999999999999999987

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.30  E-value=9.1e-12  Score=95.45  Aligned_cols=79  Identities=20%  Similarity=0.150  Sum_probs=68.2

Q ss_pred             HHHHHHcCCHHH---HHHHHHCCCCC-------CCcHHHHHHHcCCHHHHHHHHH-cCCCcccccCCCCchhhhcC---c
Q 030701           93 MGMLAVEGTYDK---MEALLSQNIHP-------VDILLMLAASEGDKPKIEELLR-AGASYTVKDADGRTALERAP---S  158 (173)
Q Consensus        93 ~~~Aa~~G~~~~---v~~LL~~Ga~~-------~dTpLh~Aa~~g~~~~v~~LL~-~GAdi~~~d~~G~TpLh~A~---~  158 (173)
                      +|+|+..|+.+.   +++|++.|+++       +.||||+|+..|+.+++++|+. .|++++.++..|.||||+|.   +
T Consensus        61 Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~  140 (166)
T PHA02743         61 THMVAWYDRANAVMKIELLVNMGADINARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYKMRD  140 (166)
T ss_pred             HHHHHHhCccCHHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHcCC
Confidence            334999988654   78999999887       3499999999999999999995 89999999999999999997   3


Q ss_pred             hHHHHHHHhhhhc
Q 030701          159 EEIKDLILNFSVQ  171 (173)
Q Consensus       159 ~ei~~lLl~~~~~  171 (173)
                      .+++++|+.+..+
T Consensus       141 ~~iv~~Ll~~ga~  153 (166)
T PHA02743        141 RRMMEILRANGAV  153 (166)
T ss_pred             HHHHHHHHHcCCC
Confidence            6899999887643

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.30  E-value=6.9e-12  Score=87.63  Aligned_cols=74  Identities=28%  Similarity=0.387  Sum_probs=67.7

Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCCC--CC----cHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhcCchHHHHHH
Q 030701           92 YMGMLAVEGTYDKMEALLSQNIHP--VD----ILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAPSEEIKDLI  165 (173)
Q Consensus        92 ~~~~Aa~~G~~~~v~~LL~~Ga~~--~d----TpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~~~ei~~lL  165 (173)
                      ++|+||..|+++++++|+..|+++  .|    |||..|.+.||.+||++||..|||-.++..+|.+.+..+.+++|.+||
T Consensus        37 plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAvwEGH~~cVklLL~~GAdrt~~~PdG~~~~eate~edIr~LL  116 (117)
T KOG4214|consen   37 PLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAVWEGHRDCVKLLLQNGADRTIHAPDGTALIEATEEEDIRELL  116 (117)
T ss_pred             cchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHHHHhhHHHHHHHHHcCcccceeCCCchhHHhhccHHHHHHHh
Confidence            456699999999999999999998  23    999999999999999999999999999999999999988888888886

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.29  E-value=1.1e-11  Score=106.74  Aligned_cols=78  Identities=26%  Similarity=0.271  Sum_probs=66.1

Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCC------CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhcC---chHHHH
Q 030701           93 MGMLAVEGTYDKMEALLSQNIHP------VDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAP---SEEIKD  163 (173)
Q Consensus        93 ~~~Aa~~G~~~~v~~LL~~Ga~~------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~---~~ei~~  163 (173)
                      +|+|+..|+.+++++|++.|+++      +.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+   +.++++
T Consensus       106 L~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~g~~eiv~  185 (413)
T PHA02875        106 LHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICK  185 (413)
T ss_pred             HHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHH
Confidence            34499999999999999999887      448999999999999999999999999999999999999986   467888


Q ss_pred             HHHhhhh
Q 030701          164 LILNFSV  170 (173)
Q Consensus       164 lLl~~~~  170 (173)
                      +|+++++
T Consensus       186 ~Ll~~ga  192 (413)
T PHA02875        186 MLLDSGA  192 (413)
T ss_pred             HHHhCCC
Confidence            8877653

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.29  E-value=4.7e-12  Score=112.56  Aligned_cols=71  Identities=28%  Similarity=0.284  Sum_probs=62.5

Q ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHCCCCC----CC---cHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhc
Q 030701           84 DDVEQYFNYMGMLAVEGTYDKMEALLSQNIHP----VD---ILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERA  156 (173)
Q Consensus        84 ~~~~~l~~~~~~Aa~~G~~~~v~~LL~~Ga~~----~d---TpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A  156 (173)
                      +....++.    ||-+++++++++||++|+++    |+   ||||+|+..|+..+|.+|+++|||++.+|.+|.+|+|+|
T Consensus        77 ~g~tlLHW----AAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~G~~~vv~lLlqhGAdpt~~D~~G~~~lHla  152 (600)
T KOG0509|consen   77 EGVTLLHW----AAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARNGHISVVDLLLQHGADPTLKDKQGLTPLHLA  152 (600)
T ss_pred             CCccceeH----HHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHcCcHHHHHHHHHcCCCCceecCCCCcHHHHH
Confidence            44444554    99999999999999999998    23   999999999999999999999999999999999999999


Q ss_pred             Cc
Q 030701          157 PS  158 (173)
Q Consensus       157 ~~  158 (173)
                      +.
T Consensus       153 ~~  154 (600)
T KOG0509|consen  153 AQ  154 (600)
T ss_pred             HH
Confidence            74

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.28  E-value=5.9e-12  Score=94.73  Aligned_cols=79  Identities=13%  Similarity=0.089  Sum_probs=68.5

Q ss_pred             HHHHHHcCCHH---HHHHHHHCCCCC-------CCcHHHHHHHcCCHHHHHHHHH-cCCCcccccCCCCchhhhcC---c
Q 030701           93 MGMLAVEGTYD---KMEALLSQNIHP-------VDILLMLAASEGDKPKIEELLR-AGASYTVKDADGRTALERAP---S  158 (173)
Q Consensus        93 ~~~Aa~~G~~~---~v~~LL~~Ga~~-------~dTpLh~Aa~~g~~~~v~~LL~-~GAdi~~~d~~G~TpLh~A~---~  158 (173)
                      +|+|+..|+.+   ++++|++.|+++       ++||||+|+..|+.+++++|+. .|++++.+|..|.||||+|.   +
T Consensus        59 Lh~a~~~~~~~~~e~v~~Ll~~gadin~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~~  138 (154)
T PHA02736         59 VHIVSNPDKADPQEKLKLLMEWGADINGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERHD  138 (154)
T ss_pred             EEeecccCchhHHHHHHHHHHcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHHcCC
Confidence            34599999874   688999999987       3499999999999999999997 59999999999999999997   3


Q ss_pred             hHHHHHHHhhhhc
Q 030701          159 EEIKDLILNFSVQ  171 (173)
Q Consensus       159 ~ei~~lLl~~~~~  171 (173)
                      .+++++|+.+..+
T Consensus       139 ~~i~~~Ll~~ga~  151 (154)
T PHA02736        139 AKMMNILRAKGAQ  151 (154)
T ss_pred             HHHHHHHHHcCCC
Confidence            7899999887654

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.27  E-value=1.7e-11  Score=107.78  Aligned_cols=79  Identities=27%  Similarity=0.253  Sum_probs=68.0

Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCCC------CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhcC----chHH
Q 030701           92 YMGMLAVEGTYDKMEALLSQNIHP------VDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAP----SEEI  161 (173)
Q Consensus        92 ~~~~Aa~~G~~~~v~~LL~~Ga~~------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~----~~ei  161 (173)
                      ++|+|+..|+.+++++|++.|+++      +.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+    +.++
T Consensus       171 pLh~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in~~d~~g~TpLh~A~~~~~~~~i  250 (477)
T PHA02878        171 ALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDARDKCGNTPLHISVGYCKDYDI  250 (477)
T ss_pred             HHHHHHhCCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhcCCHHH
Confidence            345599999999999999999887      459999999999999999999999999999999999999986    2578


Q ss_pred             HHHHHhhhh
Q 030701          162 KDLILNFSV  170 (173)
Q Consensus       162 ~~lLl~~~~  170 (173)
                      +++|++.++
T Consensus       251 v~~Ll~~ga  259 (477)
T PHA02878        251 LKLLLEHGV  259 (477)
T ss_pred             HHHHHHcCC
Confidence            888887653

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.24  E-value=3.6e-11  Score=100.65  Aligned_cols=66  Identities=20%  Similarity=0.085  Sum_probs=60.7

Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCCC-------CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhcC
Q 030701           92 YMGMLAVEGTYDKMEALLSQNIHP-------VDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAP  157 (173)
Q Consensus        92 ~~~~Aa~~G~~~~v~~LL~~Ga~~-------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~  157 (173)
                      ++|+|+..|+.+++++|++.|+++       +.||||+|+..++.+++++|+..|++++.+|.+|.||||+|.
T Consensus        73 pLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~TpLh~Aa~~~~~eivklLL~~GAdin~kd~~G~TpL~~A~  145 (300)
T PHA02884         73 PLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKITPLYISVLHGCLKCLEILLSYGADINIQTNDMVTPIELAL  145 (300)
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
Confidence            334599999999999999999988       339999999999999999999999999999999999999985

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.24  E-value=3.1e-11  Score=112.89  Aligned_cols=80  Identities=28%  Similarity=0.384  Sum_probs=70.8

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHCCCCC------CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhcC-
Q 030701           85 DVEQYFNYMGMLAVEGTYDKMEALLSQNIHP------VDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAP-  157 (173)
Q Consensus        85 ~~~~l~~~~~~Aa~~G~~~~v~~LL~~Ga~~------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~-  157 (173)
                      ....++.    ||..|+.+.++.|++.|+++      +.||||+|+..|+.+++++|+++|+|++.+|.+|.||||+|+ 
T Consensus       525 ~~~~L~~----Aa~~g~~~~l~~Ll~~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~TpL~~A~~  600 (823)
T PLN03192        525 MASNLLT----VASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAIS  600 (823)
T ss_pred             chhHHHH----HHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCHHHHHHH
Confidence            3455666    99999999999999999988      459999999999999999999999999999999999999986 


Q ss_pred             --chHHHHHHHhh
Q 030701          158 --SEEIKDLILNF  168 (173)
Q Consensus       158 --~~ei~~lLl~~  168 (173)
                        +.+++++|..+
T Consensus       601 ~g~~~iv~~L~~~  613 (823)
T PLN03192        601 AKHHKIFRILYHF  613 (823)
T ss_pred             hCCHHHHHHHHhc
Confidence              46777777654

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.22  E-value=3.7e-11  Score=92.76  Aligned_cols=64  Identities=22%  Similarity=0.101  Sum_probs=55.1

Q ss_pred             HHHHHcCCHHHHHHHHHCCCCC------CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhcC
Q 030701           94 GMLAVEGTYDKMEALLSQNIHP------VDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAP  157 (173)
Q Consensus        94 ~~Aa~~G~~~~v~~LL~~Ga~~------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~  157 (173)
                      |.|+++||+++++.|+..|+++      |-||||-||.=.+.+|+.+||.+|||+|+......||||+|+
T Consensus       102 HRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckWnN~~va~~LLqhgaDVnA~t~g~ltpLhlaa  171 (228)
T KOG0512|consen  102 HRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKWNNFEVAGRLLQHGADVNAQTKGLLTPLHLAA  171 (228)
T ss_pred             HHHHhcCchHHHHHHHHccCCcccccccCccchhhhhcccchhHHHHHHhccCcccccccccchhhHHhh
Confidence            3489999999999998888887      448999888888888999999999999988888889999887

>PHA02795 ankyrin-like protein; Provisional

Probab=99.22  E-value=2.7e-11  Score=105.74  Aligned_cols=76  Identities=18%  Similarity=0.118  Sum_probs=68.7

Q ss_pred             HHHHHcCCHHHHHHHHHCCCCC------CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhcCc---------
Q 030701           94 GMLAVEGTYDKMEALLSQNIHP------VDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAPS---------  158 (173)
Q Consensus        94 ~~Aa~~G~~~~v~~LL~~Ga~~------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~~---------  158 (173)
                      ++++..++.+++++|++.|+++      +.||||+|+..|+.+++++|++.||+++.+|..|.||||+|+.         
T Consensus       193 ~~a~~~~~~eIve~LIs~GADIN~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAdIN~~d~~G~TpLh~Aa~~g~~~~~~~  272 (437)
T PHA02795        193 FLVDEPTVLEIYKLCIPYIEDINQLDAGGRTLLYRAIYAGYIDLVSWLLENGANVNAVMSNGYTCLDVAVDRGSVIARRE  272 (437)
T ss_pred             HHHHhcCHHHHHHHHHhCcCCcCcCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCcccccc
Confidence            4588999999999999999998      4499999999999999999999999999999999999999962         


Q ss_pred             --hHHHHHHHhhh
Q 030701          159 --EEIKDLILNFS  169 (173)
Q Consensus       159 --~ei~~lLl~~~  169 (173)
                        .+++++|++..
T Consensus       273 ~~~eIvelLL~~g  285 (437)
T PHA02795        273 THLKILEILLREP  285 (437)
T ss_pred             cHHHHHHHHHhCC
Confidence              37899988754

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.22  E-value=5.6e-11  Score=99.51  Aligned_cols=75  Identities=17%  Similarity=0.146  Sum_probs=67.3

Q ss_pred             HHHcCCHHHHHHHHHCCCCC--C--------CcHHHHHHHcCCHHHHHHHHHcCCCccccc-CCCCchhhhcC---chHH
Q 030701           96 LAVEGTYDKMEALLSQNIHP--V--------DILLMLAASEGDKPKIEELLRAGASYTVKD-ADGRTALERAP---SEEI  161 (173)
Q Consensus        96 Aa~~G~~~~v~~LL~~Ga~~--~--------dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d-~~G~TpLh~A~---~~ei  161 (173)
                      |+..|+.++++.|++.|+++  .        .||||+|+..++.+++++|+++|||++.++ ..|.||||.|+   ..++
T Consensus        40 A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~TpLh~Aa~~~~~ei  119 (300)
T PHA02884         40 SIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKITPLYISVLHGCLKC  119 (300)
T ss_pred             HHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCCCHHHHHHHcCCHHH
Confidence            88889999999999999987  2        299999999999999999999999999864 57999999996   4789


Q ss_pred             HHHHHhhhh
Q 030701          162 KDLILNFSV  170 (173)
Q Consensus       162 ~~lLl~~~~  170 (173)
                      +++|+.+++
T Consensus       120 vklLL~~GA  128 (300)
T PHA02884        120 LEILLSYGA  128 (300)
T ss_pred             HHHHHHCCC
Confidence            999988764

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.21  E-value=5.7e-11  Score=103.22  Aligned_cols=78  Identities=19%  Similarity=0.218  Sum_probs=68.1

Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCC------CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhcC---chHHHH
Q 030701           93 MGMLAVEGTYDKMEALLSQNIHP------VDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAP---SEEIKD  163 (173)
Q Consensus        93 ~~~Aa~~G~~~~v~~LL~~Ga~~------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~---~~ei~~  163 (173)
                      +|+|+..|+.+++++|++.|+++      +.||||+|+..|+.+++++|++.|++++..+..|.||||+|+   +.++++
T Consensus       128 Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~g~~~iv~  207 (434)
T PHA02874        128 LHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIK  207 (434)
T ss_pred             HHHHHHCCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHH
Confidence            34499999999999999999887      449999999999999999999999999999999999999997   468888


Q ss_pred             HHHhhhh
Q 030701          164 LILNFSV  170 (173)
Q Consensus       164 lLl~~~~  170 (173)
                      +|+++..
T Consensus       208 ~Ll~~g~  214 (434)
T PHA02874        208 LLIDHGN  214 (434)
T ss_pred             HHHhCCC
Confidence            8887653

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.21  E-value=4.1e-11  Score=83.78  Aligned_cols=78  Identities=23%  Similarity=0.256  Sum_probs=71.8

Q ss_pred             HHHcCCHHHHHHHHHCCCCC-----CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhcC---chHHHHHHHh
Q 030701           96 LAVEGTYDKMEALLSQNIHP-----VDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAP---SEEIKDLILN  167 (173)
Q Consensus        96 Aa~~G~~~~v~~LL~~Ga~~-----~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~---~~ei~~lLl~  167 (173)
                      +.++|.++-|+..+..|.++     +.+|||+|+-.|..+++++|+..||+++.+|++|-|||-.|.   ...++++|+.
T Consensus         9 ~vkNG~~DeVk~~v~~g~nVn~~~ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAvwEGH~~cVklLL~   88 (117)
T KOG4214|consen    9 NVKNGEIDEVKQSVNEGLNVNEIYGGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAVWEGHRDCVKLLLQ   88 (117)
T ss_pred             hhccCcHHHHHHHHHccccHHHHhCCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHHHHhhHHHHHHHHH
Confidence            88999999999999999877     559999999999999999999999999999999999999886   5789999999


Q ss_pred             hhhccC
Q 030701          168 FSVQKA  173 (173)
Q Consensus       168 ~~~~~~  173 (173)
                      .++.|+
T Consensus        89 ~GAdrt   94 (117)
T KOG4214|consen   89 NGADRT   94 (117)
T ss_pred             cCcccc
Confidence            887664

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.20  E-value=2.5e-11  Score=105.34  Aligned_cols=120  Identities=18%  Similarity=0.252  Sum_probs=91.3

Q ss_pred             CccccCCCCcch--hhHHHhhcccCCCccccccccCCCCCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHCCCCC----
Q 030701           42 RPSRIGPSNGSR--AQCWFKFGKNGVDAENAGIYGSQKRDDFDRDDVEQYFNYMGMLAVEGTYDKMEALLSQNIHP----  115 (173)
Q Consensus        42 ~~~~~~p~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~Aa~~G~~~~v~~LL~~Ga~~----  115 (173)
                      +|.-++..||..  ++.+...-  +++.+..|.+   .-|....++..+++-    |+..||+++|+.|++.|+++    
T Consensus        44 tPL~iaaRnGH~~vVeyLle~~--~a~~e~~GsV---~FDge~IegappLWa----AsaAGHl~vVk~L~~~ga~VN~tT  114 (615)
T KOG0508|consen   44 TPLLIAARNGHADVVEYLLEHC--RASPEQGGSV---RFDGETIEGAPPLWA----ASAAGHLEVVKLLLRRGASVNDTT  114 (615)
T ss_pred             CceeeehhcCcHHHHHHHHHHh--cCCccCCceE---EeCCcccCCCchhhH----HhccCcHHHHHHHHHhcCcccccc
Confidence            555555556654  45555422  3445444422   223344455555666    99999999999999999988    


Q ss_pred             -CC-cHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhcC---chHHHHHHHhhhh
Q 030701          116 -VD-ILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAP---SEEIKDLILNFSV  170 (173)
Q Consensus       116 -~d-TpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~---~~ei~~lLl~~~~  170 (173)
                       .+ |||..||.-||.++|++|+++|||+++.|+.|+|.|++|+   +.+|.++|+++.+
T Consensus       115 ~TNStPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~ykGh~~I~qyLle~gA  174 (615)
T KOG0508|consen  115 RTNSTPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYKGHVDIAQYLLEQGA  174 (615)
T ss_pred             ccCCccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeeccCchHHHHHHHHhCC
Confidence             22 9999999999999999999999999999999999999997   4789999988764

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.20  E-value=8.3e-11  Score=93.32  Aligned_cols=68  Identities=19%  Similarity=0.198  Sum_probs=35.4

Q ss_pred             CHHHHHHHHHCCCCC------CCcHHHHHHH--cCCHHHHHHHHHcCCCcccccCCCCchhhhc-C---chHHHHHHHhh
Q 030701          101 TYDKMEALLSQNIHP------VDILLMLAAS--EGDKPKIEELLRAGASYTVKDADGRTALERA-P---SEEIKDLILNF  168 (173)
Q Consensus       101 ~~~~v~~LL~~Ga~~------~dTpLh~Aa~--~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A-~---~~ei~~lLl~~  168 (173)
                      +.+++++|++.|+++      +.||||+|+.  .++.+++++|++.|++++.+|.+|.||||.+ .   +.+++++|+++
T Consensus       102 ~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~~d~~g~t~Lh~~a~~~~~~~iv~~Ll~~  181 (209)
T PHA02859        102 EPEILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDFDNNNILYSYILFHSDKKIFDFLTSL  181 (209)
T ss_pred             cHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHhcCCHHHHHHHHHc
Confidence            455555555555554      2355555543  2455555555555555555555555555532 1   24555555544

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.19  E-value=7.6e-11  Score=101.44  Aligned_cols=76  Identities=20%  Similarity=0.153  Sum_probs=68.9

Q ss_pred             HHHHcCCHHHHHHHHHCCCCC-------CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhcC---chHHHHH
Q 030701           95 MLAVEGTYDKMEALLSQNIHP-------VDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAP---SEEIKDL  164 (173)
Q Consensus        95 ~Aa~~G~~~~v~~LL~~Ga~~-------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~---~~ei~~l  164 (173)
                      .|+..|+.+.++.|++.|...       +.||||+|+..|+.+++++|++.|+|++..+.+|.||||+|+   +.+++++
T Consensus        74 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~  153 (413)
T PHA02875         74 DAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIEL  153 (413)
T ss_pred             HHHHCCCHHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHH
Confidence            499999999999999998754       459999999999999999999999999999999999999997   4788898


Q ss_pred             HHhhhh
Q 030701          165 ILNFSV  170 (173)
Q Consensus       165 Ll~~~~  170 (173)
                      |+++..
T Consensus       154 Ll~~g~  159 (413)
T PHA02875        154 LIDHKA  159 (413)
T ss_pred             HHhcCC
Confidence            887654

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.19  E-value=4e-11  Score=106.68  Aligned_cols=77  Identities=30%  Similarity=0.392  Sum_probs=67.2

Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCC--CC----cHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhcCc---hHHHH
Q 030701           93 MGMLAVEGTYDKMEALLSQNIHP--VD----ILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAPS---EEIKD  163 (173)
Q Consensus        93 ~~~Aa~~G~~~~v~~LL~~Ga~~--~d----TpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~~---~ei~~  163 (173)
                      +|.||++|++.+|+.|++.|+++  .|    +|||+|+..|+.-.|-+||..|+|++.+|.+|+||||+|+.   ...+.
T Consensus       116 LHWAar~G~~~vv~lLlqhGAdpt~~D~~G~~~lHla~~~~~~~~vayll~~~~d~d~~D~~grTpLmwAaykg~~~~v~  195 (600)
T KOG0509|consen  116 LHWAARNGHISVVDLLLQHGADPTLKDKQGLTPLHLAAQFGHTALVAYLLSKGADIDLRDNNGRTPLMWAAYKGFALFVR  195 (600)
T ss_pred             chHHHHcCcHHHHHHHHHcCCCCceecCCCCcHHHHHHHhCchHHHHHHHHhcccCCCcCCCCCCHHHHHHHhcccHHHH
Confidence            44499999999999999999999  33    99999999999999999999999999999999999999983   22266


Q ss_pred             HHHhhh
Q 030701          164 LILNFS  169 (173)
Q Consensus       164 lLl~~~  169 (173)
                      +|+.+.
T Consensus       196 ~LL~f~  201 (600)
T KOG0509|consen  196 RLLKFG  201 (600)
T ss_pred             HHHHhc
Confidence            666654

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.18  E-value=8.6e-11  Score=102.66  Aligned_cols=80  Identities=24%  Similarity=0.184  Sum_probs=71.7

Q ss_pred             HHHHHHHHcCC--HHHHHHHHHCCCCC------CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhcC---ch
Q 030701           91 NYMGMLAVEGT--YDKMEALLSQNIHP------VDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAP---SE  159 (173)
Q Consensus        91 ~~~~~Aa~~G~--~~~v~~LL~~Ga~~------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~---~~  159 (173)
                      .+++.|+..|+  .+++++|++.|+++      +.||||+|+..|+.+++++|++.|+|++.+|..|.||+|+|.   +.
T Consensus       217 t~l~~a~~~~~~~~~iv~~Ll~~g~din~~d~~g~TpL~~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpl~~A~~~~~~  296 (480)
T PHA03100        217 TPLHIAACYNEITLEVVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNNK  296 (480)
T ss_pred             hHHHHHHHhCcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHhCCH
Confidence            34556999999  99999999999987      559999999999999999999999999999999999999997   47


Q ss_pred             HHHHHHHhhhh
Q 030701          160 EIKDLILNFSV  170 (173)
Q Consensus       160 ei~~lLl~~~~  170 (173)
                      +++++|++++.
T Consensus       297 ~iv~~Ll~~g~  307 (480)
T PHA03100        297 EIFKLLLNNGP  307 (480)
T ss_pred             HHHHHHHhcCC
Confidence            88888887653

>PHA02741 hypothetical protein; Provisional

Probab=99.18  E-value=8.5e-11  Score=90.10  Aligned_cols=74  Identities=19%  Similarity=0.300  Sum_probs=62.5

Q ss_pred             HHHHHcCCHHHHHHHHH------CCCCC------CCcHHHHHHHcCC----HHHHHHHHHcCCCcccccC-CCCchhhhc
Q 030701           94 GMLAVEGTYDKMEALLS------QNIHP------VDILLMLAASEGD----KPKIEELLRAGASYTVKDA-DGRTALERA  156 (173)
Q Consensus        94 ~~Aa~~G~~~~v~~LL~------~Ga~~------~dTpLh~Aa~~g~----~~~v~~LL~~GAdi~~~d~-~G~TpLh~A  156 (173)
                      |+|+..|+.++++.|+.      .|+++      +.||||+|+..|+    .+++++|+..|++++.++. +|.||||+|
T Consensus        26 h~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~~~~~g~TpLh~A  105 (169)
T PHA02741         26 HEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQEMLEGDTALHLA  105 (169)
T ss_pred             HHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCCcCCCCCHHHHH
Confidence            34999999999998853      24444      5599999999998    5889999999999999985 899999999


Q ss_pred             C---chHHHHHHHh
Q 030701          157 P---SEEIKDLILN  167 (173)
Q Consensus       157 ~---~~ei~~lLl~  167 (173)
                      +   +.+++++|+.
T Consensus       106 ~~~~~~~iv~~Ll~  119 (169)
T PHA02741        106 AHRRDHDLAEWLCC  119 (169)
T ss_pred             HHcCCHHHHHHHHh
Confidence            7   3688888875

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.18  E-value=4.7e-11  Score=104.72  Aligned_cols=79  Identities=23%  Similarity=0.278  Sum_probs=68.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHCCCCC------CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhcCc--
Q 030701           87 EQYFNYMGMLAVEGTYDKMEALLSQNIHP------VDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAPS--  158 (173)
Q Consensus        87 ~~l~~~~~~Aa~~G~~~~v~~LL~~Ga~~------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~~--  158 (173)
                      .-|++    |+..|.+|+|+..+..-.|+      |-|+||-|++.||.++|+||+++|+++|..|.+||||||+|+.  
T Consensus       552 aLLLD----aaLeGEldlVq~~i~ev~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCN  627 (752)
T KOG0515|consen  552 ALLLD----AALEGELDLVQRIIYEVTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCN  627 (752)
T ss_pred             HHHHh----hhhcchHHHHHHHHHhhcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcC
Confidence            34677    99999999999999887777      3399999999999999999999999999999999999999983  


Q ss_pred             -hHHHHHHHhhh
Q 030701          159 -EEIKDLILNFS  169 (173)
Q Consensus       159 -~ei~~lLl~~~  169 (173)
                       ..+++.|.+.+
T Consensus       628 nv~~ckqLVe~G  639 (752)
T KOG0515|consen  628 NVPMCKQLVESG  639 (752)
T ss_pred             chHHHHHHHhcc
Confidence             45555555543

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.17  E-value=1.8e-10  Score=105.63  Aligned_cols=76  Identities=30%  Similarity=0.362  Sum_probs=69.9

Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCC------CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhcC---chHHHH
Q 030701           93 MGMLAVEGTYDKMEALLSQNIHP------VDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAP---SEEIKD  163 (173)
Q Consensus        93 ~~~Aa~~G~~~~v~~LL~~Ga~~------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~---~~ei~~  163 (173)
                      ++.|+..|+.+.++.|++.|+++      +.||||+|+..|+.+++++|++.|+|++.+|.+|.||||+|+   +.++++
T Consensus        86 L~~aa~~G~~~~vk~LL~~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~iv~  165 (664)
T PTZ00322         86 LCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREVVQ  165 (664)
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHHH
Confidence            33499999999999999999988      459999999999999999999999999999999999999997   378999


Q ss_pred             HHHhh
Q 030701          164 LILNF  168 (173)
Q Consensus       164 lLl~~  168 (173)
                      +|+.+
T Consensus       166 ~Ll~~  170 (664)
T PTZ00322        166 LLSRH  170 (664)
T ss_pred             HHHhC
Confidence            99877

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.17  E-value=9.5e-11  Score=93.00  Aligned_cols=78  Identities=17%  Similarity=0.121  Sum_probs=63.5

Q ss_pred             HHHHHHc--CCHHHHHHHHHCCCCC-------CCcHHHHHHHc---CCHHHHHHHHHcCCCcccccCCCCchhhhcC---
Q 030701           93 MGMLAVE--GTYDKMEALLSQNIHP-------VDILLMLAASE---GDKPKIEELLRAGASYTVKDADGRTALERAP---  157 (173)
Q Consensus        93 ~~~Aa~~--G~~~~v~~LL~~Ga~~-------~dTpLh~Aa~~---g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~---  157 (173)
                      +|+|+..  |+.+++++|++.|+++       +.||||+|+..   ++.+++++|+++|+|++.+|.+|.||||+|.   
T Consensus        55 Lh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~~  134 (209)
T PHA02859         55 IFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHHYLSFNKNVEPEILKILIDSGSSITEEDEDGKNLLHMYMCNF  134 (209)
T ss_pred             HHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCHHHHHHHhCccccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhc
Confidence            3348765  4899999999999988       22899998763   4789999999999999999999999999874   


Q ss_pred             --chHHHHHHHhhhh
Q 030701          158 --SEEIKDLILNFSV  170 (173)
Q Consensus       158 --~~ei~~lLl~~~~  170 (173)
                        +.+++++|+++..
T Consensus       135 ~~~~~iv~~Li~~ga  149 (209)
T PHA02859        135 NVRINVIKLLIDSGV  149 (209)
T ss_pred             cCCHHHHHHHHHcCC
Confidence              2578888887654

>PHA02946 ankyin-like protein; Provisional

Probab=99.16  E-value=1.1e-10  Score=102.47  Aligned_cols=56  Identities=23%  Similarity=0.227  Sum_probs=27.2

Q ss_pred             CHHHHHHHHHCCCCC------CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhc
Q 030701          101 TYDKMEALLSQNIHP------VDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERA  156 (173)
Q Consensus       101 ~~~~v~~LL~~Ga~~------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A  156 (173)
                      +.++++.|++.|+++      +.||||+|+..|+.+++++|+++|||++.+|.+|.||||+|
T Consensus        51 ~~~iv~~Ll~~Gadvn~~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAdin~~d~~g~TpLh~A  112 (446)
T PHA02946         51 DERFVEELLHRGYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYL  112 (446)
T ss_pred             CHHHHHHHHHCcCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHH
Confidence            344455555554444      22455555555555555555555555555455555555543

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.15  E-value=1.4e-10  Score=89.56  Aligned_cols=75  Identities=28%  Similarity=0.315  Sum_probs=68.9

Q ss_pred             HHHcCCHHHHHHHHHCCCCC---CC----cHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhcC---chHHHHHH
Q 030701           96 LAVEGTYDKMEALLSQNIHP---VD----ILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAP---SEEIKDLI  165 (173)
Q Consensus        96 Aa~~G~~~~v~~LL~~Ga~~---~d----TpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~---~~ei~~lL  165 (173)
                      |+..+.+..|+.||+..++.   .|    ||||-|++.||.++|+.|+..||+++.+...|+||||.|+   +-+|.-+|
T Consensus        70 aae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckWnN~~va~~L  149 (228)
T KOG0512|consen   70 AAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKWNNFEVAGRL  149 (228)
T ss_pred             HHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhhcccchhHHHHH
Confidence            99999999999999998876   22    9999999999999999999999999999999999999998   47899999


Q ss_pred             Hhhhh
Q 030701          166 LNFSV  170 (173)
Q Consensus       166 l~~~~  170 (173)
                      +.+.+
T Consensus       150 Lqhga  154 (228)
T KOG0512|consen  150 LQHGA  154 (228)
T ss_pred             HhccC
Confidence            88764

>PHA03095 ankyrin-like protein; Provisional

Probab=99.15  E-value=1.5e-10  Score=100.81  Aligned_cols=74  Identities=24%  Similarity=0.182  Sum_probs=53.0

Q ss_pred             HHHcC---CHHHHHHHHHCCCCC------CCcHHHHHHHcC-CHHHHHHHHHcCCCcccccCCCCchhhhcC-----chH
Q 030701           96 LAVEG---TYDKMEALLSQNIHP------VDILLMLAASEG-DKPKIEELLRAGASYTVKDADGRTALERAP-----SEE  160 (173)
Q Consensus        96 Aa~~G---~~~~v~~LL~~Ga~~------~dTpLh~Aa~~g-~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~-----~~e  160 (173)
                      |+..|   +.++++.|++.|+++      +.||||+|+..| +.+++++|++.|++++.++..|.||||+|.     +.+
T Consensus        54 a~~~~~~~~~~iv~~Ll~~Gadin~~~~~g~TpLh~A~~~~~~~~iv~lLl~~ga~in~~~~~g~tpLh~a~~~~~~~~~  133 (471)
T PHA03095         54 YLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPLHVYLSGFNINPK  133 (471)
T ss_pred             HHHhcCCChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhCCcCCHH
Confidence            66666   777777777777776      347777777777 477777777777777777777777777775     246


Q ss_pred             HHHHHHhhh
Q 030701          161 IKDLILNFS  169 (173)
Q Consensus       161 i~~lLl~~~  169 (173)
                      ++++|++++
T Consensus       134 iv~~Ll~~g  142 (471)
T PHA03095        134 VIRLLLRKG  142 (471)
T ss_pred             HHHHHHHcC
Confidence            677766554

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.14  E-value=1.9e-10  Score=101.09  Aligned_cols=78  Identities=19%  Similarity=0.176  Sum_probs=67.1

Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCC------CCcHHHHHHHc-CCHHHHHHHHHcCCCcccccC-CCCchhhhcCc-hHHHH
Q 030701           93 MGMLAVEGTYDKMEALLSQNIHP------VDILLMLAASE-GDKPKIEELLRAGASYTVKDA-DGRTALERAPS-EEIKD  163 (173)
Q Consensus        93 ~~~Aa~~G~~~~v~~LL~~Ga~~------~dTpLh~Aa~~-g~~~~v~~LL~~GAdi~~~d~-~G~TpLh~A~~-~ei~~  163 (173)
                      +|+|+..|+.++++.|++.|+++      +.||||+|+.. ++.+++++|+++|++++.++. .|.||||+|.. .++++
T Consensus       205 Lh~A~~~~~~~iv~~Ll~~ga~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~~~~~g~TpLh~A~~~~~~v~  284 (477)
T PHA02878        205 LHHAVKHYNKPIVHILLENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTALHSSIKSERKLK  284 (477)
T ss_pred             HHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCCCHHHHHccCHHHHH
Confidence            44599999999999999999988      45999999975 689999999999999999886 79999999963 67888


Q ss_pred             HHHhhhh
Q 030701          164 LILNFSV  170 (173)
Q Consensus       164 lLl~~~~  170 (173)
                      +|+++++
T Consensus       285 ~Ll~~ga  291 (477)
T PHA02878        285 LLLEYGA  291 (477)
T ss_pred             HHHHCCC
Confidence            8887764

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.13  E-value=1e-10  Score=73.37  Aligned_cols=51  Identities=33%  Similarity=0.430  Sum_probs=39.1

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhcC---chHHHHHHH
Q 030701          116 VDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAP---SEEIKDLIL  166 (173)
Q Consensus       116 ~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~---~~ei~~lLl  166 (173)
                      +.||||+|+..|+.+++++|++.|+|++.+|.+|.||||+|+   +.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            458999999999999999999999999999999999999987   367777764

...

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.11  E-value=2.3e-10  Score=107.06  Aligned_cols=79  Identities=25%  Similarity=0.280  Sum_probs=64.0

Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCCC------CCcHHHHH-------------------------------HHcCCHHHHHH
Q 030701           92 YMGMLAVEGTYDKMEALLSQNIHP------VDILLMLA-------------------------------ASEGDKPKIEE  134 (173)
Q Consensus        92 ~~~~Aa~~G~~~~v~~LL~~Ga~~------~dTpLh~A-------------------------------a~~g~~~~v~~  134 (173)
                      ++|+||..|+.++++.|++.|+++      ++||||+|                               +..|+.++++.
T Consensus       561 pLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~TpL~~A~~~g~~~iv~~L~~~~~~~~~~~~~~~L~~Aa~~g~~~~v~~  640 (823)
T PLN03192        561 PLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISAKHHKIFRILYHFASISDPHAAGDLLCTAAKRNDLTAMKE  640 (823)
T ss_pred             HHHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHhcCcccCcccCchHHHHHHHhCCHHHHHH
Confidence            344599999999999999999887      44887755                               45555666777


Q ss_pred             HHHcCCCcccccCCCCchhhhcC---chHHHHHHHhhhh
Q 030701          135 LLRAGASYTVKDADGRTALERAP---SEEIKDLILNFSV  170 (173)
Q Consensus       135 LL~~GAdi~~~d~~G~TpLh~A~---~~ei~~lLl~~~~  170 (173)
                      |+++|+|+|.+|.+|.||||+|+   +.+++++|+++++
T Consensus       641 Ll~~Gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~GA  679 (823)
T PLN03192        641 LLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIMNGA  679 (823)
T ss_pred             HHHCCCCCCCCCCCCCCHHHHHHHCCcHHHHHHHHHcCC
Confidence            88999999999999999999997   4789999987654

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.10  E-value=2.5e-10  Score=99.68  Aligned_cols=78  Identities=21%  Similarity=0.241  Sum_probs=68.6

Q ss_pred             HHHHH--HcCCHHHHHHHHHCCCCC------CCcHHHHHHHcC--CHHHHHHHHHcCCCcccccCCCCchhhhcC---ch
Q 030701           93 MGMLA--VEGTYDKMEALLSQNIHP------VDILLMLAASEG--DKPKIEELLRAGASYTVKDADGRTALERAP---SE  159 (173)
Q Consensus        93 ~~~Aa--~~G~~~~v~~LL~~Ga~~------~dTpLh~Aa~~g--~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~---~~  159 (173)
                      +++|+  ..|+.+++++|++.|+++      +.||||+|+..|  +.+++++|++.|++++.++..|.||||+|.   +.
T Consensus       110 L~~A~~~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~~~~~  189 (480)
T PHA03100        110 LLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRYGYTPLHIAVEKGNI  189 (480)
T ss_pred             hhHHHhcccChHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCcccccCCCCCHHHHHHHhCCH
Confidence            34499  999999999999999887      459999999999  999999999999999999999999999997   47


Q ss_pred             HHHHHHHhhhh
Q 030701          160 EIKDLILNFSV  170 (173)
Q Consensus       160 ei~~lLl~~~~  170 (173)
                      +++++|+++++
T Consensus       190 ~iv~~Ll~~ga  200 (480)
T PHA03100        190 DVIKFLLDNGA  200 (480)
T ss_pred             HHHHHHHHcCC
Confidence            88888887654

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.10  E-value=1.7e-10  Score=92.11  Aligned_cols=79  Identities=25%  Similarity=0.239  Sum_probs=69.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHCCCCC------CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhcCc--
Q 030701           87 EQYFNYMGMLAVEGTYDKMEALLSQNIHP------VDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAPS--  158 (173)
Q Consensus        87 ~~l~~~~~~Aa~~G~~~~v~~LL~~Ga~~------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~~--  158 (173)
                      ++|.+    |+..||..+|++|+..|+++      ..++|.+|+..|..++|++||.++.|+|.-|-+|-|||-+|+.  
T Consensus       162 TpLiW----Aaa~G~i~vV~fLL~~GAdp~~lgk~resALsLAt~ggytdiV~lLL~r~vdVNvyDwNGgTpLlyAvrgn  237 (296)
T KOG0502|consen  162 TPLIW----AAAKGHIPVVQFLLNSGADPDALGKYRESALSLATRGGYTDIVELLLTREVDVNVYDWNGGTPLLYAVRGN  237 (296)
T ss_pred             hHhHH----HHhcCchHHHHHHHHcCCChhhhhhhhhhhHhHHhcCChHHHHHHHHhcCCCcceeccCCCceeeeeecCC
Confidence            44555    99999999999999999998      3399999999999999999999999999999999999999984  


Q ss_pred             -hHHHHHHHhhh
Q 030701          159 -EEIKDLILNFS  169 (173)
Q Consensus       159 -~ei~~lLl~~~  169 (173)
                       .+|++.|++.+
T Consensus       238 hvkcve~Ll~sG  249 (296)
T KOG0502|consen  238 HVKCVESLLNSG  249 (296)
T ss_pred             hHHHHHHHHhcC
Confidence             57788877654

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.08  E-value=1.8e-10  Score=109.33  Aligned_cols=75  Identities=28%  Similarity=0.249  Sum_probs=56.2

Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCCC------CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhcCc---hHHH
Q 030701           92 YMGMLAVEGTYDKMEALLSQNIHP------VDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAPS---EEIK  162 (173)
Q Consensus        92 ~~~~Aa~~G~~~~v~~LL~~Ga~~------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~~---~ei~  162 (173)
                      ++|+|+..|+.++|++||++|+++      +.||||.||..|+.+|+++|+++||++|..|.+|.|||++|..   ..++
T Consensus       543 pLh~A~~~g~v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~vna~d~~g~TpL~iA~~lg~~~~~  622 (1143)
T KOG4177|consen  543 PLHVAVHYGNVDLVKFLLEHGADVNAKDKLGYTPLHQAAQQGHNDIAELLLKHGASVNAADLDGFTPLHIAVRLGYLSVV  622 (1143)
T ss_pred             hHHHHHhcCCchHHHHhhhCCccccccCCCCCChhhHHHHcChHHHHHHHHHcCCCCCcccccCcchhHHHHHhcccchh
Confidence            556688888888888888888777      3388888888888888888888888888888888888888763   3455


Q ss_pred             HHHH
Q 030701          163 DLIL  166 (173)
Q Consensus       163 ~lLl  166 (173)
                      ++|+
T Consensus       623 k~l~  626 (1143)
T KOG4177|consen  623 KLLK  626 (1143)
T ss_pred             hHHH
Confidence            5544

>PHA03095 ankyrin-like protein; Provisional

Probab=99.08  E-value=4.1e-10  Score=98.03  Aligned_cols=84  Identities=20%  Similarity=0.192  Sum_probs=73.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHCCCCC------CCcHHHHHHHcC---CHHHHHHHHHcCCCcccccCCCCchhhhc
Q 030701           86 VEQYFNYMGMLAVEGTYDKMEALLSQNIHP------VDILLMLAASEG---DKPKIEELLRAGASYTVKDADGRTALERA  156 (173)
Q Consensus        86 ~~~l~~~~~~Aa~~G~~~~v~~LL~~Ga~~------~dTpLh~Aa~~g---~~~~v~~LL~~GAdi~~~d~~G~TpLh~A  156 (173)
                      ...++.| -.++..++.++|+.|++.|+++      +.||||+|+..+   +.+++++|++.|+|++.++..|.||||+|
T Consensus        12 ~~~l~~~-~~~~~~~~~~~v~~Ll~~ga~vn~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadin~~~~~g~TpLh~A   90 (471)
T PHA03095         12 EAALYDY-LLNASNVTVEEVRRLLAAGADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHLY   90 (471)
T ss_pred             HHHHHHH-HHcCCCCCHHHHHHHHHcCCCcccCCCCCCCHHHHHHHhcCCChHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Confidence            3446665 4488899999999999999988      459999999988   99999999999999999999999999999


Q ss_pred             C----chHHHHHHHhhhh
Q 030701          157 P----SEEIKDLILNFSV  170 (173)
Q Consensus       157 ~----~~ei~~lLl~~~~  170 (173)
                      +    ..+++++|++++.
T Consensus        91 ~~~~~~~~iv~lLl~~ga  108 (471)
T PHA03095         91 LYNATTLDVIKLLIKAGA  108 (471)
T ss_pred             HHcCCcHHHHHHHHHcCC
Confidence            7    3688999987754

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.07  E-value=5e-10  Score=76.41  Aligned_cols=53  Identities=23%  Similarity=0.316  Sum_probs=47.6

Q ss_pred             HHHHHcCCHHHHHHHHHCCCCC------CCcHHHHHHHcCCHHHHHHHHHcCCCccccc
Q 030701           94 GMLAVEGTYDKMEALLSQNIHP------VDILLMLAASEGDKPKIEELLRAGASYTVKD  146 (173)
Q Consensus        94 ~~Aa~~G~~~~v~~LL~~Ga~~------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d  146 (173)
                      ++|+..|+.+++++|++.|+++      +.||||+|+..|+.+++++|+++|++++.+|
T Consensus        31 ~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~n   89 (89)
T PF12796_consen   31 HYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNLEIVKLLLEHGADVNIRN   89 (89)
T ss_dssp             HHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHHHHHHHHHTTT-TTSS-
T ss_pred             HHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcC
Confidence            3499999999999999999998      4499999999999999999999999999875

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.06  E-value=1.5e-10  Score=97.79  Aligned_cols=76  Identities=32%  Similarity=0.449  Sum_probs=62.6

Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCC---------------------------------------------CCcHHHHHHHcC
Q 030701           93 MGMLAVEGTYDKMEALLSQNIHP---------------------------------------------VDILLMLAASEG  127 (173)
Q Consensus        93 ~~~Aa~~G~~~~v~~LL~~Ga~~---------------------------------------------~dTpLh~Aa~~g  127 (173)
                      ||++..+++.++|+.||+.|...                                             +.|+|++|..+|
T Consensus       272 LHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mgnVNaKAsQ~gQTALMLAVSHG  351 (452)
T KOG0514|consen  272 LHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMGDVNAKASQHGQTALMLAVSHG  351 (452)
T ss_pred             eeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhccCcchhhhhhcchhhhhhhhcC
Confidence            46788888888888888776432                                             118999999999


Q ss_pred             CHHHHHHHHHcCCCcccccCCCCchhhhcC---chHHHHHHHhh
Q 030701          128 DKPKIEELLRAGASYTVKDADGRTALERAP---SEEIKDLILNF  168 (173)
Q Consensus       128 ~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~---~~ei~~lLl~~  168 (173)
                      ..++|+.||.+|||+|+.|.+|.|+|++|+   ++||+++|+..
T Consensus       352 r~d~vk~LLacgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~  395 (452)
T KOG0514|consen  352 RVDMVKALLACGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAV  395 (452)
T ss_pred             cHHHHHHHHHccCCCccccCCccHHHhhhhhhChHHHHHHHhcc
Confidence            999999999999999999999999999997   37888888753

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.06  E-value=3.6e-10  Score=86.53  Aligned_cols=76  Identities=16%  Similarity=0.188  Sum_probs=62.4

Q ss_pred             HHHHHHHHHHHcCCH----HHHHHHHHCCCCC------CCcHHHHHHHcCCHHH---HHHHHHcCCCccccc-CCCCchh
Q 030701           88 QYFNYMGMLAVEGTY----DKMEALLSQNIHP------VDILLMLAASEGDKPK---IEELLRAGASYTVKD-ADGRTAL  153 (173)
Q Consensus        88 ~l~~~~~~Aa~~G~~----~~v~~LL~~Ga~~------~dTpLh~Aa~~g~~~~---v~~LL~~GAdi~~~d-~~G~TpL  153 (173)
                      .++.    ||..|++    +++++|++.|+.+      +.||||+|+..|+.+.   +++|+..|++++.++ ..|.|||
T Consensus        23 ~l~~----a~~~g~~~~l~~~~~~l~~~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~~d~~~g~TpL   98 (166)
T PHA02743         23 TFLR----ICRTGNIYELMEVAPFISGDGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADINARELGTGNTLL   98 (166)
T ss_pred             HHHH----HHHcCCHHHHHHHHHHHhhcchhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCCCCCCCCCcHH
Confidence            3666    9999998    5566777888665      4599999999988654   799999999999998 5899999


Q ss_pred             hhcC---chHHHHHHHh
Q 030701          154 ERAP---SEEIKDLILN  167 (173)
Q Consensus       154 h~A~---~~ei~~lLl~  167 (173)
                      |+|+   +.+++++|+.
T Consensus        99 h~A~~~g~~~iv~~Ll~  115 (166)
T PHA02743         99 HIAASTKNYELAEWLCR  115 (166)
T ss_pred             HHHHHhCCHHHHHHHHh
Confidence            9997   4678888874

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.04  E-value=2.8e-10  Score=108.01  Aligned_cols=82  Identities=26%  Similarity=0.278  Sum_probs=73.0

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHCCCCC------CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhcCc---h
Q 030701           89 YFNYMGMLAVEGTYDKMEALLSQNIHP------VDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAPS---E  159 (173)
Q Consensus        89 l~~~~~~Aa~~G~~~~v~~LL~~Ga~~------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~~---~  159 (173)
                      .+..+|+++..++...++.+++.|+++      +.||||.|+..|+..+|++||++|||++.+++.|+||||.|+.   .
T Consensus       507 ~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa~~G~~  586 (1143)
T KOG4177|consen  507 GLTPLHLAADEDTVKVAKILLEHGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGADVNAKDKLGYTPLHQAAQQGHN  586 (1143)
T ss_pred             ccchhhhhhhhhhHHHHHHHhhcCCceehhcccccchHHHHHhcCCchHHHHhhhCCccccccCCCCCChhhHHHHcChH
Confidence            455577788888888889899888887      3399999999999999999999999999999999999999983   7


Q ss_pred             HHHHHHHhhhh
Q 030701          160 EIKDLILNFSV  170 (173)
Q Consensus       160 ei~~lLl~~~~  170 (173)
                      +|+.+|.+++.
T Consensus       587 ~i~~LLlk~GA  597 (1143)
T KOG4177|consen  587 DIAELLLKHGA  597 (1143)
T ss_pred             HHHHHHHHcCC
Confidence            89999998875

>PHA02946 ankyin-like protein; Provisional

Probab=99.04  E-value=6.4e-10  Score=97.66  Aligned_cols=75  Identities=16%  Similarity=0.138  Sum_probs=66.6

Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhcC---chHHHHHHHhh
Q 030701           92 YMGMLAVEGTYDKMEALLSQNIHPVDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAP---SEEIKDLILNF  168 (173)
Q Consensus        92 ~~~~Aa~~G~~~~v~~LL~~Ga~~~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~---~~ei~~lLl~~  168 (173)
                      ++|+|+..|+.++|++||+.|++ +.||||+|+..++.+++++|+.+|++++.+ .+|.||||+|.   +.++++.|+..
T Consensus       300 pLh~Aa~~g~~eivk~Ll~~~~~-~~t~L~~A~~~~~~~~v~~Ll~~ga~~n~~-~~G~t~l~~a~~~~~~~~~~~ll~~  377 (446)
T PHA02946        300 DFKMAVEVGSIRCVKYLLDNDII-CEDAMYYAVLSEYETMVDYLLFNHFSVDSV-VNGHTCMSECVRLNNPVILSKLMLH  377 (446)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCc-cccHHHHHHHhCHHHHHHHHHHCCCCCCCc-cccccHHHHHHHcCCHHHHHHHHhc
Confidence            45669999999999999999864 689999999999999999999999999985 68999999997   36788777764

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.03  E-value=1e-09  Score=95.32  Aligned_cols=66  Identities=24%  Similarity=0.205  Sum_probs=51.9

Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCCC------CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhcC
Q 030701           92 YMGMLAVEGTYDKMEALLSQNIHP------VDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAP  157 (173)
Q Consensus        92 ~~~~Aa~~G~~~~v~~LL~~Ga~~------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~  157 (173)
                      ++|+|+..|+.+++++|++.|+++      +.||||+|+..|+.+++++|++.|++++.++..|.||||.|.
T Consensus       160 pLh~A~~~~~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~i~~~~~~g~TpL~~A~  231 (434)
T PHA02874        160 PIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAI  231 (434)
T ss_pred             HHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHH
Confidence            344599999999999999998876      459999999999999999999888776666555555555553

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.02  E-value=9.4e-10  Score=100.75  Aligned_cols=79  Identities=19%  Similarity=0.214  Sum_probs=65.2

Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCCC------CCcHHHHHHHcCC-HHHHHHHHHcCCCcccccCCCCchhhhcCc----hH
Q 030701           92 YMGMLAVEGTYDKMEALLSQNIHP------VDILLMLAASEGD-KPKIEELLRAGASYTVKDADGRTALERAPS----EE  160 (173)
Q Consensus        92 ~~~~Aa~~G~~~~v~~LL~~Ga~~------~dTpLh~Aa~~g~-~~~v~~LL~~GAdi~~~d~~G~TpLh~A~~----~e  160 (173)
                      ++|+|+..|+.++++.|++.|+++      +.||||+|+..+. ..++++|++.|++++.+|.+|+||||+|+.    .+
T Consensus       378 pLh~Aa~~~~~~iv~~Ll~~gad~~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~~gadin~~d~~G~TpLh~Aa~~~~~~~  457 (682)
T PHA02876        378 PIHYAAVRNNVVIINTLLDYGADIEALSQKIGTALHFALCGTNPYMSVKTLIDRGANVNSKNKDLSTPLHYACKKNCKLD  457 (682)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCccccCCCCCchHHHHHHcCCHHHHHHHHHhCCCCCCcCCCCCChHHHHHHHhCCcHH
Confidence            455699999999999999999887      4499999887655 467888999999999999999999999862    57


Q ss_pred             HHHHHHhhhh
Q 030701          161 IKDLILNFSV  170 (173)
Q Consensus       161 i~~lLl~~~~  170 (173)
                      ++++|+++++
T Consensus       458 iv~lLl~~Ga  467 (682)
T PHA02876        458 VIEMLLDNGA  467 (682)
T ss_pred             HHHHHHHCCC
Confidence            8888887654

>PHA02798 ankyrin-like protein; Provisional

Probab=99.01  E-value=9.1e-10  Score=97.25  Aligned_cols=72  Identities=25%  Similarity=0.246  Sum_probs=59.4

Q ss_pred             cCCHHHHHHHHHCCCCC------CCcHHHHHHHcC---CHHHHHHHHHcCCCcccccCCCCchhhhcC---c---hHHHH
Q 030701           99 EGTYDKMEALLSQNIHP------VDILLMLAASEG---DKPKIEELLRAGASYTVKDADGRTALERAP---S---EEIKD  163 (173)
Q Consensus        99 ~G~~~~v~~LL~~Ga~~------~dTpLh~Aa~~g---~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~---~---~ei~~  163 (173)
                      .++.++++.|++.|+++      +.||||+|+..+   +.+++++|+++|||++.+|.+|.||||+|.   .   .++++
T Consensus        86 ~~~~~iv~~Ll~~GadiN~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv~  165 (489)
T PHA02798         86 KHMLDIVKILIENGADINKKNSDGETPLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIK  165 (489)
T ss_pred             HhHHHHHHHHHHCCCCCCCCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCcchHHHHH
Confidence            36789999999999887      459999998865   678999999999999999999999999875   2   57888


Q ss_pred             HHHhhhh
Q 030701          164 LILNFSV  170 (173)
Q Consensus       164 lLl~~~~  170 (173)
                      +|++.+.
T Consensus       166 ~Ll~~ga  172 (489)
T PHA02798        166 LLLEKGV  172 (489)
T ss_pred             HHHHhCC
Confidence            8877643

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.97  E-value=2.2e-09  Score=90.92  Aligned_cols=74  Identities=30%  Similarity=0.343  Sum_probs=64.9

Q ss_pred             HHHHHcCCHHHHHHHHHCCCCC------CCcHHHHHHHcCCHHHHHHHH-HcCCCcccccCCCCchhhhcC---chHHHH
Q 030701           94 GMLAVEGTYDKMEALLSQNIHP------VDILLMLAASEGDKPKIEELL-RAGASYTVKDADGRTALERAP---SEEIKD  163 (173)
Q Consensus        94 ~~Aa~~G~~~~v~~LL~~Ga~~------~dTpLh~Aa~~g~~~~v~~LL-~~GAdi~~~d~~G~TpLh~A~---~~ei~~  163 (173)
                      -+|..+|..++|+.||.+|+|+      |.|+|++||.+||.+++.+|| ..++|+...|.+|.|+|.+|-   +.||.-
T Consensus       345 MLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~DgSTAl~IAleagh~eIa~  424 (452)
T KOG0514|consen  345 MLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGSTALSIALEAGHREIAV  424 (452)
T ss_pred             hhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhhhChHHHHHHHhccCcccceeecCCCchhhhhHHhcCchHHHH
Confidence            3688999999999999999998      339999999999999999999 567999999999999999985   467776


Q ss_pred             HHHh
Q 030701          164 LILN  167 (173)
Q Consensus       164 lLl~  167 (173)
                      +|-.
T Consensus       425 mlYa  428 (452)
T KOG0514|consen  425 MLYA  428 (452)
T ss_pred             HHHH
Confidence            6643

>PHA02989 ankyrin repeat protein; Provisional

Probab=98.97  E-value=2e-09  Score=95.18  Aligned_cols=51  Identities=24%  Similarity=0.277  Sum_probs=46.5

Q ss_pred             cHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhcC---chHHHHHHHhh
Q 030701          118 ILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAP---SEEIKDLILNF  168 (173)
Q Consensus       118 TpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~---~~ei~~lLl~~  168 (173)
                      ||||+|+..|+.+++++|++.|||++.+|..|.||||+|.   +.+++++|++.
T Consensus       258 TpL~~Aa~~~~~~~v~~LL~~Gadin~~d~~G~TpL~~A~~~~~~~iv~~LL~~  311 (494)
T PHA02989        258 NPLLISAKVDNYEAFNYLLKLGDDIYNVSKDGDTVLTYAIKHGNIDMLNRILQL  311 (494)
T ss_pred             CHHHHHHHhcCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence            9999999999999999999999999999999999999997   36777777654

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=98.96  E-value=2.1e-09  Score=99.55  Aligned_cols=69  Identities=16%  Similarity=0.220  Sum_probs=58.7

Q ss_pred             cCCHHHHHHHHHCCCCC------CCcHHHHHHHcCC--HHHHHHHHHcCCCcccccCCCCchhhhcC------chHHHHH
Q 030701           99 EGTYDKMEALLSQNIHP------VDILLMLAASEGD--KPKIEELLRAGASYTVKDADGRTALERAP------SEEIKDL  164 (173)
Q Consensus        99 ~G~~~~v~~LL~~Ga~~------~dTpLh~Aa~~g~--~~~v~~LL~~GAdi~~~d~~G~TpLh~A~------~~ei~~l  164 (173)
                      .++.+++++|++.|+++      +.||||+|+..|+  .++|++|+++|||++.+|..|.||||.|.      ..+++++
T Consensus       189 ~~~~eIVklLLe~GADVN~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GADVN~kD~~G~TPLh~Ai~~a~n~~~EIvki  268 (764)
T PHA02716        189 YVDIDILEWLCNNGVNVNLQNNHLITPLHTYLITGNVCASVIKKIIELGGDMDMKCVNGMSPIMTYIINIDNINPEITNI  268 (764)
T ss_pred             cCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhhhccCHHHHHH
Confidence            46889999999999988      4499999999985  48999999999999999999999999763      3566666


Q ss_pred             HHh
Q 030701          165 ILN  167 (173)
Q Consensus       165 Ll~  167 (173)
                      |++
T Consensus       269 Lie  271 (764)
T PHA02716        269 YIE  271 (764)
T ss_pred             HHH
Confidence            654

>PHA02795 ankyrin-like protein; Provisional

Probab=98.96  E-value=1.3e-09  Score=95.28  Aligned_cols=80  Identities=20%  Similarity=0.110  Sum_probs=69.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHCCCCC---C---------CcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhh
Q 030701           87 EQYFNYMGMLAVEGTYDKMEALLSQNIHP---V---------DILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALE  154 (173)
Q Consensus        87 ~~l~~~~~~Aa~~G~~~~v~~LL~~Ga~~---~---------dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh  154 (173)
                      +.++.    |+..|+.+++++|++.|++.   .         .|++|.++..++.+++++|+.+|||+|.+|.+|.||||
T Consensus       151 t~lh~----A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GADIN~kD~~G~TpLh  226 (437)
T PHA02795        151 NAYFR----GICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDINQLDAGGRTLLY  226 (437)
T ss_pred             CHHHH----HHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCCcCcCCCCCCCHHH
Confidence            34555    99999999999999999854   2         16788899999999999999999999999999999999


Q ss_pred             hcC---chHHHHHHHhhhh
Q 030701          155 RAP---SEEIKDLILNFSV  170 (173)
Q Consensus       155 ~A~---~~ei~~lLl~~~~  170 (173)
                      +|+   +.+++++|+++++
T Consensus       227 ~Aa~~g~~eiVelLL~~GA  245 (437)
T PHA02795        227 RAIYAGYIDLVSWLLENGA  245 (437)
T ss_pred             HHHHcCCHHHHHHHHHCCC
Confidence            997   4789999987764

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=98.96  E-value=1.3e-09  Score=90.19  Aligned_cols=65  Identities=26%  Similarity=0.341  Sum_probs=60.9

Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCC------CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhcC
Q 030701           93 MGMLAVEGTYDKMEALLSQNIHP------VDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAP  157 (173)
Q Consensus        93 ~~~Aa~~G~~~~v~~LL~~Ga~~------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~  157 (173)
                      +|+||.+||-++|..||+..+++      ++||||+||.-|.-.+.+-|+.+||-+++.+++|.|||+.|.
T Consensus        71 lhlaaahghrdivqkll~~kadvnavnehgntplhyacfwgydqiaedli~~ga~v~icnk~g~tpldkak  141 (448)
T KOG0195|consen   71 LHLAAAHGHRDIVQKLLSRKADVNAVNEHGNTPLHYACFWGYDQIAEDLISCGAAVNICNKKGMTPLDKAK  141 (448)
T ss_pred             hhhhhhcccHHHHHHHHHHhcccchhhccCCCchhhhhhhcHHHHHHHHHhccceeeecccCCCCchhhhc
Confidence            34599999999999999999888      779999999999999999999999999999999999999985

>PHA02989 ankyrin repeat protein; Provisional

Probab=98.95  E-value=2.6e-09  Score=94.48  Aligned_cols=71  Identities=17%  Similarity=0.172  Sum_probs=52.7

Q ss_pred             CCHHHHHHHHHCCCCC------CCcHHHHHHHc---CCHHHHHHHHHcCCCc-ccccCCCCchhhhcC-----chHHHHH
Q 030701          100 GTYDKMEALLSQNIHP------VDILLMLAASE---GDKPKIEELLRAGASY-TVKDADGRTALERAP-----SEEIKDL  164 (173)
Q Consensus       100 G~~~~v~~LL~~Ga~~------~dTpLh~Aa~~---g~~~~v~~LL~~GAdi-~~~d~~G~TpLh~A~-----~~ei~~l  164 (173)
                      |+.++++.|++.|+++      +.||||.|+..   ++.+++++|+++|||+ +.+|..|.||||+|.     +.+++++
T Consensus        86 ~~~~iv~~Ll~~Gadin~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~  165 (494)
T PHA02989         86 KIKKIVKLLLKFGADINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKI  165 (494)
T ss_pred             hHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHH
Confidence            4467888888888877      44888877654   5678888888888888 778888888888763     3577788


Q ss_pred             HHhhhh
Q 030701          165 ILNFSV  170 (173)
Q Consensus       165 Ll~~~~  170 (173)
                      |+++++
T Consensus       166 Ll~~Ga  171 (494)
T PHA02989        166 LLSFGV  171 (494)
T ss_pred             HHHcCC
Confidence            776654

>PHA02876 ankyrin repeat protein; Provisional

Probab=98.95  E-value=3.5e-09  Score=96.99  Aligned_cols=75  Identities=20%  Similarity=0.140  Sum_probs=66.7

Q ss_pred             HHHHHcCCHHHHHHHHHCCCCC------CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhcC---chHHHHH
Q 030701           94 GMLAVEGTYDKMEALLSQNIHP------VDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAP---SEEIKDL  164 (173)
Q Consensus        94 ~~Aa~~G~~~~v~~LL~~Ga~~------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~---~~ei~~l  164 (173)
                      ..+...|+.+++++|++.|+++      +.||||+|+..|+.++|++|++.||+++..+.+|.||||+|.   +.+++++
T Consensus       150 ~~~i~~~~~~i~k~Ll~~Gadvn~~d~~G~TpLh~Aa~~G~~~iv~~LL~~Gad~n~~~~~g~t~L~~A~~~~~~~ivk~  229 (682)
T PHA02876        150 KERIQQDELLIAEMLLEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLECAVDSKNIDTIKA  229 (682)
T ss_pred             HHHHHCCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCccCCCCCCHHHHHHHcCCHHHHHH
Confidence            3488999999999999999988      559999999999999999999999999999999999999997   3567776


Q ss_pred             HHhh
Q 030701          165 ILNF  168 (173)
Q Consensus       165 Ll~~  168 (173)
                      |++.
T Consensus       230 Ll~~  233 (682)
T PHA02876        230 IIDN  233 (682)
T ss_pred             HHhc
Confidence            6543

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=98.91  E-value=2.5e-09  Score=88.25  Aligned_cols=86  Identities=28%  Similarity=0.265  Sum_probs=75.8

Q ss_pred             ChhhHHHHHHHHHHHHHcCCHHHHHHHHHCCCCCC-------CcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhh
Q 030701           82 DRDDVEQYFNYMGMLAVEGTYDKMEALLSQNIHPV-------DILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALE  154 (173)
Q Consensus        82 ~~~~~~~l~~~~~~Aa~~G~~~~v~~LL~~Ga~~~-------dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh  154 (173)
                      |..+...|-+    |+..|+++.|+.||+.|+|+.       -||||+|+..|+.++.++|++.||.....|.-|+|+-.
T Consensus        42 D~sGMs~Lah----AaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSGn~dvcrllldaGa~~~~vNsvgrTAaq  117 (396)
T KOG1710|consen   42 DPSGMSVLAH----AAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSGNQDVCRLLLDAGARMYLVNSVGRTAAQ  117 (396)
T ss_pred             CCCcccHHHH----HHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcCCchHHHHHHhccCccccccchhhhHHH
Confidence            3455566888    999999999999999999992       29999999999999999999999999999999999999


Q ss_pred             hcC---chHHHHHHHhhhhc
Q 030701          155 RAP---SEEIKDLILNFSVQ  171 (173)
Q Consensus       155 ~A~---~~ei~~lLl~~~~~  171 (173)
                      .|+   +.+++.++.+|..+
T Consensus       118 mAAFVG~H~CV~iINN~~t~  137 (396)
T KOG1710|consen  118 MAAFVGHHECVAIINNHITI  137 (396)
T ss_pred             HHHHhcchHHHHHHhccccH
Confidence            886   68888888877643

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=98.91  E-value=4.1e-09  Score=97.62  Aligned_cols=76  Identities=14%  Similarity=0.077  Sum_probs=66.1

Q ss_pred             HHHHcCCHHHHHHHHHCCCCC------CCcHHHHHHH--cCCHHHHHHHHHcCCCcccccCCCCchhhhcC---------
Q 030701           95 MLAVEGTYDKMEALLSQNIHP------VDILLMLAAS--EGDKPKIEELLRAGASYTVKDADGRTALERAP---------  157 (173)
Q Consensus        95 ~Aa~~G~~~~v~~LL~~Ga~~------~dTpLh~Aa~--~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~---------  157 (173)
                      .|+..|+.++++.|++.|+++      +.||||+|+.  .++.+++++|++.|++++.+|..|+||||+|.         
T Consensus       290 ~AA~~g~leiVklLLe~GAdIN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADIN~kD~~G~TPLH~A~~~lav~~~l  369 (764)
T PHA02716        290 TLARNIDISVVYSFLQPGVKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLNEPDNIGNTVLHTYLSMLSVVNIL  369 (764)
T ss_pred             HHHHcCCHHHHHHHHhCCCceeccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCCccCCCCCCCHHHHHHHhhhhhccc
Confidence            378999999999999999987      4599999764  46889999999999999999999999999863         


Q ss_pred             --------chHHHHHHHhhhh
Q 030701          158 --------SEEIKDLILNFSV  170 (173)
Q Consensus       158 --------~~ei~~lLl~~~~  170 (173)
                              +.+++++|+++++
T Consensus       370 d~~~~~~~~~eVVklLL~~GA  390 (764)
T PHA02716        370 DPETDNDIRLDVIQCLISLGA  390 (764)
T ss_pred             cccccccChHHHHHHHHHCCC
Confidence                    3588898887754

>PHA02917 ankyrin-like protein; Provisional

Probab=98.89  E-value=4.9e-09  Score=96.20  Aligned_cols=72  Identities=14%  Similarity=0.116  Sum_probs=62.7

Q ss_pred             HHHcCCHHHHHHHHHCCCCC--C------------------CcHHHHHHH-----------cCCHHHHHHHHHcCCCccc
Q 030701           96 LAVEGTYDKMEALLSQNIHP--V------------------DILLMLAAS-----------EGDKPKIEELLRAGASYTV  144 (173)
Q Consensus        96 Aa~~G~~~~v~~LL~~Ga~~--~------------------dTpLh~Aa~-----------~g~~~~v~~LL~~GAdi~~  144 (173)
                      ++..|+.+++++||+.|+++  .                  .||||+|+.           .++.+++++|+++|||++.
T Consensus       145 a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~  224 (661)
T PHA02917        145 MTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSS  224 (661)
T ss_pred             HccCCCHHHHHHHHHcCCCccccccccccccccccccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCccc
Confidence            34579999999999999987  1                  299999986           4689999999999999999


Q ss_pred             ccCCCCchhhhcCc-----hHHHHHHHh
Q 030701          145 KDADGRTALERAPS-----EEIKDLILN  167 (173)
Q Consensus       145 ~d~~G~TpLh~A~~-----~ei~~lLl~  167 (173)
                      +|.+|.||||+|..     .+++++|+.
T Consensus       225 ~d~~G~TpLh~A~~~g~~~~eivk~Li~  252 (661)
T PHA02917        225 IDKNYCTALQYYIKSSHIDIDIVKLLMK  252 (661)
T ss_pred             CCCCCCcHHHHHHHcCCCcHHHHHHHHh
Confidence            99999999999973     378998875

>PHA02798 ankyrin-like protein; Provisional

Probab=98.89  E-value=3e-09  Score=93.97  Aligned_cols=75  Identities=17%  Similarity=0.128  Sum_probs=64.4

Q ss_pred             HHHcCCHHHHHHHHHCCCCC------CCcHHHHHHHc-----CCHHHHHHHHHcCCCcccccCCCCchhhhcC------c
Q 030701           96 LAVEGTYDKMEALLSQNIHP------VDILLMLAASE-----GDKPKIEELLRAGASYTVKDADGRTALERAP------S  158 (173)
Q Consensus        96 Aa~~G~~~~v~~LL~~Ga~~------~dTpLh~Aa~~-----g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~------~  158 (173)
                      ....++.++|++|++.|+++      +.||||.++..     ++.+++++|+++|||+|.+|.+|.||||+|.      +
T Consensus        45 ~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~~d~~G~TpLh~a~~~~~~~~  124 (489)
T PHA02798         45 QRDSPSTDIVKLFINLGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGETPLYCLLSNGYINN  124 (489)
T ss_pred             hCCCCCHHHHHHHHHCCCCCCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCCCCCCCCcCcHHHHHHHcCCcCh
Confidence            34567899999999999998      45999998754     6789999999999999999999999999986      3


Q ss_pred             hHHHHHHHhhhh
Q 030701          159 EEIKDLILNFSV  170 (173)
Q Consensus       159 ~ei~~lLl~~~~  170 (173)
                      .+++++|+++++
T Consensus       125 ~~iv~~Ll~~Ga  136 (489)
T PHA02798        125 LEILLFMIENGA  136 (489)
T ss_pred             HHHHHHHHHcCC
Confidence            588888887654

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=98.89  E-value=3.1e-09  Score=98.36  Aligned_cols=67  Identities=21%  Similarity=0.152  Sum_probs=61.2

Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCCC--------------------CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCc
Q 030701           92 YMGMLAVEGTYDKMEALLSQNIHP--------------------VDILLMLAASEGDKPKIEELLRAGASYTVKDADGRT  151 (173)
Q Consensus        92 ~~~~Aa~~G~~~~v~~LL~~Ga~~--------------------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~T  151 (173)
                      ++|+||.+|++++|+.|++.|+++                    +.||||.|+..|+.+++++|++.|+|++.+|..|+|
T Consensus       131 pLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin~~d~~g~T  210 (743)
T TIGR00870       131 ALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADILTADSLGNT  210 (743)
T ss_pred             HHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcchhhHhhhhhH
Confidence            445599999999999999999886                    128999999999999999999999999999999999


Q ss_pred             hhhhcCc
Q 030701          152 ALERAPS  158 (173)
Q Consensus       152 pLh~A~~  158 (173)
                      |||+|..
T Consensus       211 ~Lh~A~~  217 (743)
T TIGR00870       211 LLHLLVM  217 (743)
T ss_pred             HHHHHHh
Confidence            9999974

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PHA02792 ankyrin-like protein; Provisional

Probab=98.89  E-value=4e-09  Score=95.58  Aligned_cols=102  Identities=12%  Similarity=0.048  Sum_probs=72.6

Q ss_pred             CCccccccccCCCCCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHCCCCC------C--CcHHHHHHHcCCH---HHHH
Q 030701           65 VDAENAGIYGSQKRDDFDRDDVEQYFNYMGMLAVEGTYDKMEALLSQNIHP------V--DILLMLAASEGDK---PKIE  133 (173)
Q Consensus        65 ~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~Aa~~G~~~~v~~LL~~Ga~~------~--dTpLh~Aa~~g~~---~~v~  133 (173)
                      ++.+...+..+.+.+.........++.    ||..|+.+++++|++.|+++      +  .||||+|+.....   ++++
T Consensus       319 v~ieiIK~LId~Ga~~~r~~~~n~~~~----Aa~~gn~eIVelLIs~GADIN~kD~~g~~~TpLh~A~~n~~~~v~~Ilk  394 (631)
T PHA02792        319 VYINVIKCMIDEGATLYRFKHINKYFQ----KFDNRDPKVVEYILKNGNVVVEDDDNIINIMPLFPTLSIHESDVLSILK  394 (631)
T ss_pred             ccHHHHHHHHHCCCccccCCcchHHHH----HHHcCCHHHHHHHHHcCCchhhhcCCCCChhHHHHHHHhccHhHHHHHH
Confidence            444444444444433332223334666    89999999999999999988      1  2889887765544   3577


Q ss_pred             HHHHcCCCcccccCCCCchhhhcC---chHHHHHHHhhhh
Q 030701          134 ELLRAGASYTVKDADGRTALERAP---SEEIKDLILNFSV  170 (173)
Q Consensus       134 ~LL~~GAdi~~~d~~G~TpLh~A~---~~ei~~lLl~~~~  170 (173)
                      +|+.+|||+|.+|..|.||||+|+   +.+++++|+++++
T Consensus       395 lLIs~GADIN~kD~~G~TPLh~Aa~~~n~eivelLLs~GA  434 (631)
T PHA02792        395 LCKPYIDDINKIDKHGRSILYYCIESHSVSLVEWLIDNGA  434 (631)
T ss_pred             HHHhcCCccccccccCcchHHHHHHcCCHHHHHHHHHCCC
Confidence            888999999999999999999987   4788888887654

>PHA02917 ankyrin-like protein; Provisional

Probab=98.85  E-value=7.7e-09  Score=94.95  Aligned_cols=77  Identities=16%  Similarity=0.158  Sum_probs=63.2

Q ss_pred             HHHHHcCCHHHHHHHHHCCCCC------CCcHHHHH--HHcCCHHHHHHHHHcCCCcccccC---CC-----------Cc
Q 030701           94 GMLAVEGTYDKMEALLSQNIHP------VDILLMLA--ASEGDKPKIEELLRAGASYTVKDA---DG-----------RT  151 (173)
Q Consensus        94 ~~Aa~~G~~~~v~~LL~~Ga~~------~dTpLh~A--a~~g~~~~v~~LL~~GAdi~~~d~---~G-----------~T  151 (173)
                      ++|+..|+.++|++|++.|+++      +.||||.+  +..|+.+++++|+++||+++.+|.   .|           .|
T Consensus       108 ~~a~~~~~~e~vk~Ll~~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~~~~~~~t  187 (661)
T PHA02917        108 YMKSKNVDVDLIKVLVEHGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDDYQPRNCGT  187 (661)
T ss_pred             HHHhhcCCHHHHHHHHHcCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCcccccccccccccccccccccccc
Confidence            4688999999999999999998      34999954  357899999999999999987654   34           59


Q ss_pred             hhhhcC--------------chHHHHHHHhhhh
Q 030701          152 ALERAP--------------SEEIKDLILNFSV  170 (173)
Q Consensus       152 pLh~A~--------------~~ei~~lLl~~~~  170 (173)
                      |||+|+              ..+++++|+++++
T Consensus       188 ~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Ga  220 (661)
T PHA02917        188 VLHLYIISHLYSESDTRAYVRPEVVKCLINHGI  220 (661)
T ss_pred             HHHHHHhhcccccccccccCcHHHHHHHHHCCC
Confidence            999985              2589999987654

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.85  E-value=6.9e-09  Score=94.97  Aligned_cols=78  Identities=27%  Similarity=0.355  Sum_probs=62.5

Q ss_pred             HHHHHHcCCHHHHHHHHH-CCCCC-------CCcHHHHHHHcCCHHHHHHHHHcCCCcc---cccCCCCchhhhcC---c
Q 030701           93 MGMLAVEGTYDKMEALLS-QNIHP-------VDILLMLAASEGDKPKIEELLRAGASYT---VKDADGRTALERAP---S  158 (173)
Q Consensus        93 ~~~Aa~~G~~~~v~~LL~-~Ga~~-------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~---~~d~~G~TpLh~A~---~  158 (173)
                      +|.||.-|.+++|+.|++ .|.-.       +.||||+|+..||..++++|+..||+.+   ..|.+|.||||.|+   +
T Consensus       310 LH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~GA~~~~~~e~D~dg~TaLH~Aa~~g~  389 (929)
T KOG0510|consen  310 LHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNKGALFLNMSEADSDGNTALHLAAKYGN  389 (929)
T ss_pred             hHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhhhcCHHHHHHHHHhcChhhhcccccccCCchhhhHHHHhcc
Confidence            344999999999999998 44322       4499999999999999999999999877   45889999999997   4


Q ss_pred             hHHHHHHHhhhh
Q 030701          159 EEIKDLILNFSV  170 (173)
Q Consensus       159 ~ei~~lLl~~~~  170 (173)
                      ..++++|+.+++
T Consensus       390 ~~av~~Li~~Ga  401 (929)
T KOG0510|consen  390 TSAVQKLISHGA  401 (929)
T ss_pred             HHHHHHHHHcCC
Confidence            677777776654

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=98.82  E-value=1.4e-08  Score=63.59  Aligned_cols=44  Identities=23%  Similarity=0.231  Sum_probs=36.7

Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCC------CCcHHHHHHHcCCHHHHHHHH
Q 030701           93 MGMLAVEGTYDKMEALLSQNIHP------VDILLMLAASEGDKPKIEELL  136 (173)
Q Consensus        93 ~~~Aa~~G~~~~v~~LL~~Ga~~------~dTpLh~Aa~~g~~~~v~~LL  136 (173)
                      ++.|+..|+.+++++|++.|.++      +.||||+|+..|+.+++++|+
T Consensus         5 lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    5 LHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             HHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            44599999999999999999988      459999999999999999986

...

>PHA02736 Viral ankyrin protein; Provisional

Probab=98.79  E-value=8.3e-09  Score=77.50  Aligned_cols=73  Identities=19%  Similarity=0.189  Sum_probs=54.1

Q ss_pred             HHHHcCCHHHHHHHHHCCC----------CC-CCcHHHHHHHcCCH---HHHHHHHHcCCCcccccC-CCCchhhhcC--
Q 030701           95 MLAVEGTYDKMEALLSQNI----------HP-VDILLMLAASEGDK---PKIEELLRAGASYTVKDA-DGRTALERAP--  157 (173)
Q Consensus        95 ~Aa~~G~~~~v~~LL~~Ga----------~~-~dTpLh~Aa~~g~~---~~v~~LL~~GAdi~~~d~-~G~TpLh~A~--  157 (173)
                      +|+..|+...+........          +. +.||||+|+..|+.   +++++|+..|++++.++. +|.||||+|+  
T Consensus        23 ~A~~~g~~~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~~~~~g~T~Lh~A~~~  102 (154)
T PHA02736         23 YLCRNGGVTDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGKERVFGNTPLHIAVYT  102 (154)
T ss_pred             HHHHhCCHHHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCccccCCCCCCcHHHHHHHh
Confidence            4999998533221111111          11 55999999999987   468899999999999984 8999999997  


Q ss_pred             -chHHHHHHHh
Q 030701          158 -SEEIKDLILN  167 (173)
Q Consensus       158 -~~ei~~lLl~  167 (173)
                       +.+++++|+.
T Consensus       103 ~~~~i~~~Ll~  113 (154)
T PHA02736        103 QNYELATWLCN  113 (154)
T ss_pred             CCHHHHHHHHh
Confidence             4678888775

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=98.78  E-value=3.8e-08  Score=75.38  Aligned_cols=74  Identities=31%  Similarity=0.385  Sum_probs=65.3

Q ss_pred             HHHHHcCC-----HHHHHHHHHCCC--CC-------CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhcCc-
Q 030701           94 GMLAVEGT-----YDKMEALLSQNI--HP-------VDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAPS-  158 (173)
Q Consensus        94 ~~Aa~~G~-----~~~v~~LL~~Ga--~~-------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~~-  158 (173)
                      ++|+..|+     .++++.||+.|+  +.       ++||||+|+..|+.+++++|+..|++++.++..|.|++++|.. 
T Consensus       111 ~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~  190 (235)
T COG0666         111 HLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKN  190 (235)
T ss_pred             HHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCCCCchhHHHHHcCchHHHHHHHhcCCCCcccccCCCcchhhhccc
Confidence            34999999     999999999999  33       5599999999999999999999999999999999999999974 


Q ss_pred             --hHHHHHHHh
Q 030701          159 --EEIKDLILN  167 (173)
Q Consensus       159 --~ei~~lLl~  167 (173)
                        .++.+++..
T Consensus       191 ~~~~~~~~l~~  201 (235)
T COG0666         191 GRIELVKLLLD  201 (235)
T ss_pred             chHHHHHHHHh
Confidence              556666554

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=98.77  E-value=6.1e-08  Score=67.85  Aligned_cols=72  Identities=29%  Similarity=0.387  Sum_probs=43.5

Q ss_pred             HHHcCCHHHHHHHHHCCCCC------CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhcCc---hHHHHHHH
Q 030701           96 LAVEGTYDKMEALLSQNIHP------VDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAPS---EEIKDLIL  166 (173)
Q Consensus        96 Aa~~G~~~~v~~LL~~Ga~~------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~~---~ei~~lLl  166 (173)
                      |+..|+.++++.|++.|.+.      +.||||.|+..+..++++.|+..|++++..+..|.||+|+|..   .+++++|.
T Consensus        14 a~~~~~~~~i~~li~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~   93 (126)
T cd00204          14 AASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAARNGNLDVVKLLL   93 (126)
T ss_pred             HHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCcHHHHHHHH
Confidence            66666666666666666542      3366666666666666666666666666666666666666642   44555554


Q ss_pred             h
Q 030701          167 N  167 (173)
Q Consensus       167 ~  167 (173)
                      .
T Consensus        94 ~   94 (126)
T cd00204          94 K   94 (126)
T ss_pred             H
Confidence            4

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.77  E-value=1.7e-08  Score=92.51  Aligned_cols=81  Identities=23%  Similarity=0.263  Sum_probs=70.5

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHCCCCC----C--CcHHHHHHHcCCHHHHHHHHH-cC-CCcccccCCCCchhhhcCc---
Q 030701           90 FNYMGMLAVEGTYDKMEALLSQNIHP----V--DILLMLAASEGDKPKIEELLR-AG-ASYTVKDADGRTALERAPS---  158 (173)
Q Consensus        90 ~~~~~~Aa~~G~~~~v~~LL~~Ga~~----~--dTpLh~Aa~~g~~~~v~~LL~-~G-Adi~~~d~~G~TpLh~A~~---  158 (173)
                      +.+||+||++|+.+.|+.|+..|+++    .  .||||.|+..|...+|+-||+ .| ...|..|-.|.||||+|+.   
T Consensus       274 ~tpLH~a~r~G~~~svd~Ll~~Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH  353 (929)
T KOG0510|consen  274 CTPLHYAARQGGPESVDNLLGFGASINSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGH  353 (929)
T ss_pred             CchHHHHHHcCChhHHHHHHHcCCcccccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhhhcCH
Confidence            34566799999999999999999998    2  299999999999999999997 65 5788889999999999984   


Q ss_pred             hHHHHHHHhhhh
Q 030701          159 EEIKDLILNFSV  170 (173)
Q Consensus       159 ~ei~~lLl~~~~  170 (173)
                      ..++++|++.++
T Consensus       354 ~~v~qlLl~~GA  365 (929)
T KOG0510|consen  354 DRVVQLLLNKGA  365 (929)
T ss_pred             HHHHHHHHhcCh
Confidence            689999987654

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.76  E-value=3.4e-08  Score=86.44  Aligned_cols=71  Identities=25%  Similarity=0.246  Sum_probs=64.7

Q ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHCCCCC-------CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhh
Q 030701           83 RDDVEQYFNYMGMLAVEGTYDKMEALLSQNIHP-------VDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALER  155 (173)
Q Consensus        83 ~~~~~~l~~~~~~Aa~~G~~~~v~~LL~~Ga~~-------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~  155 (173)
                      .+-..+|+.    .++.|++++.-.||..|+++       ++||||.|+..|..-.+++|+-.|||++..|.+|.||+.+
T Consensus       131 ~~LsrQLha----svRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~GmtP~~~  206 (669)
T KOG0818|consen  131 KDLSKQLHS----SVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSGMTPVDY  206 (669)
T ss_pred             HHHHHHHHH----HhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCCCcHHHH
Confidence            344556666    88999999999999999988       7799999999999999999999999999999999999999


Q ss_pred             cC
Q 030701          156 AP  157 (173)
Q Consensus       156 A~  157 (173)
                      |.
T Consensus       207 AR  208 (669)
T KOG0818|consen  207 AR  208 (669)
T ss_pred             HH
Confidence            96

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=98.74  E-value=1.3e-08  Score=81.43  Aligned_cols=63  Identities=25%  Similarity=0.301  Sum_probs=59.3

Q ss_pred             HHHHcCCHHHHHHHHHCCCCC------CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhcC
Q 030701           95 MLAVEGTYDKMEALLSQNIHP------VDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAP  157 (173)
Q Consensus        95 ~Aa~~G~~~~v~~LL~~Ga~~------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~  157 (173)
                      +|+..|..++|++|+.++.++      +-|||-+|+..+|.+|++.|+..|||++..+..|.+++++|.
T Consensus       199 LAt~ggytdiV~lLL~r~vdVNvyDwNGgTpLlyAvrgnhvkcve~Ll~sGAd~t~e~dsGy~~mdlAV  267 (296)
T KOG0502|consen  199 LATRGGYTDIVELLLTREVDVNVYDWNGGTPLLYAVRGNHVKCVESLLNSGADVTQEDDSGYWIMDLAV  267 (296)
T ss_pred             HHhcCChHHHHHHHHhcCCCcceeccCCCceeeeeecCChHHHHHHHHhcCCCcccccccCCcHHHHHH
Confidence            588889999999999999988      449999999999999999999999999999999999999997

>PHA02730 ankyrin-like protein; Provisional

Probab=98.73  E-value=3.2e-08  Score=90.53  Aligned_cols=78  Identities=12%  Similarity=0.074  Sum_probs=44.2

Q ss_pred             HHHHHHcCC----HHHHHHHHHCCCC--C------CCcHHHH---HHHcC---------CHHHHHHHHHcCCCcccccCC
Q 030701           93 MGMLAVEGT----YDKMEALLSQNIH--P------VDILLML---AASEG---------DKPKIEELLRAGASYTVKDAD  148 (173)
Q Consensus        93 ~~~Aa~~G~----~~~v~~LL~~Ga~--~------~dTpLh~---Aa~~g---------~~~~v~~LL~~GAdi~~~d~~  148 (173)
                      +|+|+..++    .+++++||+.|++  +      +.||||.   +...+         ..+++++|+.+|||++.+|..
T Consensus       382 LH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LIs~GADINakD~~  461 (672)
T PHA02730        382 LHDYFVNNNNIVDVNVVRFIVENNGHMAINHVSNNGRLCMYGLILSRFNNCGYHCYETILIDVFDILSKYMDDIDMIDNE  461 (672)
T ss_pred             HHHHHHHcCCcchHHHHHHHHHcCCCccccccccCCCchHhHHHHHHhccccccccchhHHHHHHHHHhcccchhccCCC
Confidence            334665553    6777777766652  2      3366662   22121         123466666667777766666


Q ss_pred             CCchhhhcC---chHHHHHHHhhhh
Q 030701          149 GRTALERAP---SEEIKDLILNFSV  170 (173)
Q Consensus       149 G~TpLh~A~---~~ei~~lLl~~~~  170 (173)
                      |.||||+|+   +.+++++|+++++
T Consensus       462 G~TPLh~Aa~~~~~eive~LI~~GA  486 (672)
T PHA02730        462 NKTLLYYAVDVNNIQFARRLLEYGA  486 (672)
T ss_pred             CCCHHHHHHHhCCHHHHHHHHHCCC
Confidence            777777665   2556666665543

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=98.71  E-value=8.3e-08  Score=73.46  Aligned_cols=75  Identities=32%  Similarity=0.389  Sum_probs=66.1

Q ss_pred             HHHHcCCHHHHHHHHHCCCCC------CCcHHHHHHHcCC-----HHHHHHHHHcCC---CcccccCCCCchhhhcC---
Q 030701           95 MLAVEGTYDKMEALLSQNIHP------VDILLMLAASEGD-----KPKIEELLRAGA---SYTVKDADGRTALERAP---  157 (173)
Q Consensus        95 ~Aa~~G~~~~v~~LL~~Ga~~------~dTpLh~Aa~~g~-----~~~v~~LL~~GA---di~~~d~~G~TpLh~A~---  157 (173)
                      .++..+..+.+++++..|+++      ++||||+|+..++     .++++.|++.|+   +.+.+|..|.||||+|.   
T Consensus        79 ~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~g~tpl~~A~~~~  158 (235)
T COG0666          79 SAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNG  158 (235)
T ss_pred             HHHHcCcHHHHHHHHHcCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCCCCchhHHHHHcC
Confidence            399999999999999999988      5599999999999     999999999999   66667999999999997   


Q ss_pred             chHHHHHHHhhh
Q 030701          158 SEEIKDLILNFS  169 (173)
Q Consensus       158 ~~ei~~lLl~~~  169 (173)
                      ..+++++|+...
T Consensus       159 ~~~~~~~ll~~~  170 (235)
T COG0666         159 DADIVELLLEAG  170 (235)
T ss_pred             chHHHHHHHhcC
Confidence            357888877654

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=98.69  E-value=4.7e-08  Score=85.94  Aligned_cols=75  Identities=21%  Similarity=0.325  Sum_probs=49.5

Q ss_pred             HHHcCCHHHHHHHHHCCCCC------CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhcCc---hHHHHHHH
Q 030701           96 LAVEGTYDKMEALLSQNIHP------VDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAPS---EEIKDLIL  166 (173)
Q Consensus        96 Aa~~G~~~~v~~LL~~Ga~~------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~~---~ei~~lLl  166 (173)
                      |+..|+++-++.|+..|+.+      +.|+||.+|.-.+.+||.+|+++|++||..|..|+||||.|+.   ..++..|+
T Consensus        47 A~~~~d~~ev~~ll~~ga~~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn~~d~e~wtPlhaaascg~~~i~~~li  126 (527)
T KOG0505|consen   47 ACSRGDLEEVRKLLNRGASPNLCNVDGLTALHQACIDDNLEMVKFLVENGANVNAQDNEGWTPLHAAASCGYLNIVEYLI  126 (527)
T ss_pred             ccccccHHHHHHHhccCCCccccCCccchhHHHHHhcccHHHHHHHHHhcCCccccccccCCcchhhcccccHHHHHHHH
Confidence            66677777777777666655      3367777777777777777777777777777777777776653   45666665


Q ss_pred             hhhh
Q 030701          167 NFSV  170 (173)
Q Consensus       167 ~~~~  170 (173)
                      ++++
T Consensus       127 ~~gA  130 (527)
T KOG0505|consen  127 QHGA  130 (527)
T ss_pred             Hhhh
Confidence            5543

>PHA02730 ankyrin-like protein; Provisional

Probab=98.68  E-value=6.6e-08  Score=88.47  Aligned_cols=77  Identities=9%  Similarity=0.006  Sum_probs=63.2

Q ss_pred             HHHHHHHHHHHHcC---CHHHHHHHHHCCCCC------CCcHHHHHHHcC--CHHHHHHHHHcCC--CcccccCCCCchh
Q 030701           87 EQYFNYMGMLAVEG---TYDKMEALLSQNIHP------VDILLMLAASEG--DKPKIEELLRAGA--SYTVKDADGRTAL  153 (173)
Q Consensus        87 ~~l~~~~~~Aa~~G---~~~~v~~LL~~Ga~~------~dTpLh~Aa~~g--~~~~v~~LL~~GA--di~~~d~~G~TpL  153 (173)
                      +.||.    |+..|   +.++|++||+.|+++      |.||||+|+..+  +.+++++|+..|+  +++..+..+.+||
T Consensus        43 TaLh~----A~~~~~~~~~eivklLLs~GAdin~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~~~~~~~~~~~d~~l  118 (672)
T PHA02730         43 NALHC----YVSNKCDTDIKIVRLLLSRGVERLCRNNEGLTPLGVYSKRKYVKSQIVHLLISSYSNASNELTSNINDFDL  118 (672)
T ss_pred             cHHHH----HHHcCCcCcHHHHHHHHhCCCCCcccCCCCCChHHHHHHcCCCcHHHHHHHHhcCCCCCcccccccCCchH
Confidence            44665    99887   599999999999998      569999999866  7999999999965  5577787789999


Q ss_pred             hhcC-----chHHHHHHHh
Q 030701          154 ERAP-----SEEIKDLILN  167 (173)
Q Consensus       154 h~A~-----~~ei~~lLl~  167 (173)
                      +.+.     ..+++++|+.
T Consensus       119 ~~y~~s~n~~~~~vk~Li~  137 (672)
T PHA02730        119 YSYMSSDNIDLRLLKYLIV  137 (672)
T ss_pred             HHHHHhcCCcHHHHHHHHH
Confidence            9765     2578888884

>PHA02792 ankyrin-like protein; Provisional

Probab=98.67  E-value=6.6e-08  Score=87.81  Aligned_cols=62  Identities=11%  Similarity=0.005  Sum_probs=54.5

Q ss_pred             HHHcCCH---HHHHHHHHCCCCC------CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhcC
Q 030701           96 LAVEGTY---DKMEALLSQNIHP------VDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAP  157 (173)
Q Consensus        96 Aa~~G~~---~~v~~LL~~Ga~~------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~  157 (173)
                      |+.....   ++++.|++.|+++      +.||||+|+..++.+++++|+++|++++.+|..|.||||+|.
T Consensus       381 A~~n~~~~v~~IlklLIs~GADIN~kD~~G~TPLh~Aa~~~n~eivelLLs~GADIN~kD~~G~TpL~~A~  451 (631)
T PHA02792        381 TLSIHESDVLSILKLCKPYIDDINKIDKHGRSILYYCIESHSVSLVEWLIDNGADINITTKYGSTCIGICV  451 (631)
T ss_pred             HHHhccHhHHHHHHHHHhcCCccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHH
Confidence            5555443   4688899999988      459999999999999999999999999999999999999985

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.64  E-value=3.3e-08  Score=86.12  Aligned_cols=82  Identities=26%  Similarity=0.272  Sum_probs=72.3

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHCCCCC--CC----cHHHHHHHcCCHHHHHHHH-HcCCCcccccCCCCchhhhcC
Q 030701           85 DVEQYFNYMGMLAVEGTYDKMEALLSQNIHP--VD----ILLMLAASEGDKPKIEELL-RAGASYTVKDADGRTALERAP  157 (173)
Q Consensus        85 ~~~~l~~~~~~Aa~~G~~~~v~~LL~~Ga~~--~d----TpLh~Aa~~g~~~~v~~LL-~~GAdi~~~d~~G~TpLh~A~  157 (173)
                      .+-.++.    ||+.|++..++.+.-+|.+.  .|    |+||.|+..|+.+++++|+ ..+.|++.+|++|+|||+-|.
T Consensus       506 ~~i~~~~----aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~  581 (622)
T KOG0506|consen  506 TVINVMY----AAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAK  581 (622)
T ss_pred             chhhhhh----hhhcCCHHHHHHHHHhcccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhH
Confidence            3445666    99999999999999999988  33    9999999999999999999 558999999999999999997


Q ss_pred             ---chHHHHHHHhhhh
Q 030701          158 ---SEEIKDLILNFSV  170 (173)
Q Consensus       158 ---~~ei~~lLl~~~~  170 (173)
                         +.+++++|.++..
T Consensus       582 ~F~h~~v~k~L~~~~~  597 (622)
T KOG0506|consen  582 HFKHKEVVKLLEEAQY  597 (622)
T ss_pred             hcCcHHHHHHHHHHhc
Confidence               4899999998765

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.63  E-value=7.9e-08  Score=88.01  Aligned_cols=80  Identities=23%  Similarity=0.270  Sum_probs=69.8

Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCCC-----C------------------------CcHHHHHHHcCCHHHHHHHHHcCCCc
Q 030701           92 YMGMLAVEGTYDKMEALLSQNIHP-----V------------------------DILLMLAASEGDKPKIEELLRAGASY  142 (173)
Q Consensus        92 ~~~~Aa~~G~~~~v~~LL~~Ga~~-----~------------------------dTpLh~Aa~~g~~~~v~~LL~~GAdi  142 (173)
                      .+|+|..+-+.++|+.|++.|||+     |                        ..||-+||+.+..+++++|+++|||+
T Consensus       187 aLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gAd~  266 (782)
T KOG3676|consen  187 ALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGADP  266 (782)
T ss_pred             hHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhcCCCC
Confidence            578899999999999999999998     1                        16999999999999999999999999


Q ss_pred             ccccCCCCchhhhcCc---hHHHHHHHhhhhc
Q 030701          143 TVKDADGRTALERAPS---EEIKDLILNFSVQ  171 (173)
Q Consensus       143 ~~~d~~G~TpLh~A~~---~ei~~lLl~~~~~  171 (173)
                      +.+|..|.|.||...-   .++.++++++...
T Consensus       267 ~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~  298 (782)
T KOG3676|consen  267 NAQDSNGNTVLHMLVIHFVTEMYDLALELGAN  298 (782)
T ss_pred             CccccCCChHHHHHHHHHHHHHHHHHHhcCCC
Confidence            9999999999998763   5666777766543

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.62  E-value=6.6e-08  Score=54.59  Aligned_cols=32  Identities=28%  Similarity=0.372  Sum_probs=29.7

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCcccccC
Q 030701          116 VDILLMLAASEGDKPKIEELLRAGASYTVKDA  147 (173)
Q Consensus       116 ~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~  147 (173)
                      +.||||+|+..|+.+++++|+++|++++.+|+
T Consensus         2 G~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~   33 (33)
T PF00023_consen    2 GNTPLHYAAQRGHPDIVKLLLKHGADINARDN   33 (33)
T ss_dssp             SBBHHHHHHHTTCHHHHHHHHHTTSCTTCBCT
T ss_pred             cccHHHHHHHHHHHHHHHHHHHCcCCCCCCCC
Confidence            46999999999999999999999999998874

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=98.61  E-value=3.1e-07  Score=64.20  Aligned_cols=70  Identities=31%  Similarity=0.430  Sum_probs=61.9

Q ss_pred             HHHcCCHHHHHHHHHCCCCC------CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhcCc---hHHHHHH
Q 030701           96 LAVEGTYDKMEALLSQNIHP------VDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAPS---EEIKDLI  165 (173)
Q Consensus        96 Aa~~G~~~~v~~LL~~Ga~~------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~~---~ei~~lL  165 (173)
                      |+..++.++++.|+..|+++      +.||+|+|+..++.+++++|+..|.+++..+..+.||+++|..   .+++++|
T Consensus        47 a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L  125 (126)
T cd00204          47 AAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLL  125 (126)
T ss_pred             HHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCHHHHHHh
Confidence            99999999999999999654      4499999999999999999999999999999999999999974   4555554

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>PF13606 Ank_3: Ankyrin repeat

Probab=98.60  E-value=6.7e-08  Score=53.75  Aligned_cols=29  Identities=34%  Similarity=0.379  Sum_probs=26.8

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCccc
Q 030701          116 VDILLMLAASEGDKPKIEELLRAGASYTV  144 (173)
Q Consensus       116 ~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~  144 (173)
                      ++||||+|+..|+.+++++|+++|+|+|.
T Consensus         2 G~T~Lh~A~~~g~~e~v~~Ll~~gadvn~   30 (30)
T PF13606_consen    2 GNTPLHLAASNGNIEIVKYLLEHGADVNA   30 (30)
T ss_pred             CCCHHHHHHHhCCHHHHHHHHHcCCCCCC
Confidence            46999999999999999999999999974

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=98.57  E-value=4.9e-08  Score=88.88  Aligned_cols=75  Identities=24%  Similarity=0.290  Sum_probs=65.2

Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCC------CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhcCc---hHHHH
Q 030701           93 MGMLAVEGTYDKMEALLSQNIHP------VDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAPS---EEIKD  163 (173)
Q Consensus        93 ~~~Aa~~G~~~~v~~LL~~Ga~~------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~~---~ei~~  163 (173)
                      +|+||-.|+.++|+.|+.++..+      +.||||.++.+||.+++.+|+.+|+|+-++|+.+.|+|++|+.   .++++
T Consensus        86 lhlaaw~g~~e~vkmll~q~d~~na~~~e~~tplhlaaqhgh~dvv~~Ll~~~adp~i~nns~~t~ldlA~qfgr~~Vvq  165 (854)
T KOG0507|consen   86 LHLAAWNGNLEIVKMLLLQTDILNAVNIENETPLHLAAQHGHLEVVFYLLKKNADPFIRNNSKETVLDLASRFGRAEVVQ  165 (854)
T ss_pred             EEehhhcCcchHHHHHHhcccCCCcccccCcCccchhhhhcchHHHHHHHhcCCCccccCcccccHHHHHHHhhhhHHHH
Confidence            45599999999999999988444      4499999999999999999999999999999999999999984   56777


Q ss_pred             HHHh
Q 030701          164 LILN  167 (173)
Q Consensus       164 lLl~  167 (173)
                      +|+.
T Consensus       166 ~ll~  169 (854)
T KOG0507|consen  166 MLLQ  169 (854)
T ss_pred             HHhh
Confidence            7754

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.53  E-value=1.9e-07  Score=83.02  Aligned_cols=75  Identities=29%  Similarity=0.337  Sum_probs=67.6

Q ss_pred             HHHcCCHHHHHHHHHCCCCC--------CC--cHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhcC---chHHH
Q 030701           96 LAVEGTYDKMEALLSQNIHP--------VD--ILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAP---SEEIK  162 (173)
Q Consensus        96 Aa~~G~~~~v~~LL~~Ga~~--------~d--TpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~---~~ei~  162 (173)
                      |....++..+-.||.+|...        +|  |+||+||..|++...++|+-.|+|+.++|..|+|+|.+|.   ..||.
T Consensus       631 A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a~sqec~  710 (749)
T KOG0705|consen  631 AVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQAGSQECI  710 (749)
T ss_pred             HHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhhcccHHHH
Confidence            77888888999999988654        23  9999999999999999999999999999999999999997   38999


Q ss_pred             HHHHhhhh
Q 030701          163 DLILNFSV  170 (173)
Q Consensus       163 ~lLl~~~~  170 (173)
                      ++|+.|++
T Consensus       711 d~llq~gc  718 (749)
T KOG0705|consen  711 DVLLQYGC  718 (749)
T ss_pred             HHHHHcCC
Confidence            99999875

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=98.49  E-value=2.8e-07  Score=81.44  Aligned_cols=79  Identities=20%  Similarity=0.266  Sum_probs=67.0

Q ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHCCCCC------CCcHHHHHHHcCCHHHHHHHHHcCCCccccc-CCCCchhhh
Q 030701           83 RDDVEQYFNYMGMLAVEGTYDKMEALLSQNIHP------VDILLMLAASEGDKPKIEELLRAGASYTVKD-ADGRTALER  155 (173)
Q Consensus        83 ~~~~~~l~~~~~~Aa~~G~~~~v~~LL~~Ga~~------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d-~~G~TpLh~  155 (173)
                      .++++.||+    |.-.||+++|++||+.|+++      |.||||+|+.+++..+++.|++.||-+.+.+ .++.|+.+-
T Consensus       581 dEGITaLHN----AiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCNnv~~ckqLVe~GaavfAsTlSDmeTa~eK  656 (752)
T KOG0515|consen  581 DEGITALHN----AICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCNNVPMCKQLVESGAAVFASTLSDMETAAEK  656 (752)
T ss_pred             ccchhHHhh----hhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcCchHHHHHHHhccceEEeeecccccchhhh
Confidence            456778899    99999999999999999998      4499999999999999999999999988765 478899876


Q ss_pred             cCc-----hHHHHHH
Q 030701          156 APS-----EEIKDLI  165 (173)
Q Consensus       156 A~~-----~ei~~lL  165 (173)
                      +..     .+|.++|
T Consensus       657 Cee~eeGY~~CsqyL  671 (752)
T KOG0515|consen  657 CEEMEEGYDQCSQYL  671 (752)
T ss_pred             cchhhhhHHHHHHHH
Confidence            642     3566665

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=98.43  E-value=3.3e-07  Score=80.67  Aligned_cols=82  Identities=20%  Similarity=0.228  Sum_probs=71.4

Q ss_pred             CChhhHHHHHHHHHHHHHcCCHHHHHHHHHCCCCC------CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhh
Q 030701           81 FDRDDVEQYFNYMGMLAVEGTYDKMEALLSQNIHP------VDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALE  154 (173)
Q Consensus        81 ~~~~~~~~l~~~~~~Aa~~G~~~~v~~LL~~Ga~~------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh  154 (173)
                      +..+..+.+++    ++...+.++|++|++.|+++      +.||||.|+..||..++++|+..||++.+.+.+|..|++
T Consensus        69 ~n~DglTalhq----~~id~~~e~v~~l~e~ga~Vn~~d~e~wtPlhaaascg~~~i~~~li~~gA~~~avNsdg~~P~d  144 (527)
T KOG0505|consen   69 CNVDGLTALHQ----ACIDDNLEMVKFLVENGANVNAQDNEGWTPLHAAASCGYLNIVEYLIQHGANLLAVNSDGNMPYD  144 (527)
T ss_pred             cCCccchhHHH----HHhcccHHHHHHHHHhcCCccccccccCCcchhhcccccHHHHHHHHHhhhhhhhccCCCCCccc
Confidence            44556677888    99999999999999999998      449999999999999999999999999999999999999


Q ss_pred             hcCchHHHHHHH
Q 030701          155 RAPSEEIKDLIL  166 (173)
Q Consensus       155 ~A~~~ei~~lLl  166 (173)
                      ++..+...+++.
T Consensus       145 l~e~ea~~~~l~  156 (527)
T KOG0505|consen  145 LAEDEATLDVLE  156 (527)
T ss_pred             cccCcchhHHHH
Confidence            997654444443

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.41  E-value=1.1e-06  Score=75.12  Aligned_cols=83  Identities=23%  Similarity=0.351  Sum_probs=70.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHCCCCC--CC----cHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhcCch
Q 030701           86 VEQYFNYMGMLAVEGTYDKMEALLSQNIHP--VD----ILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAPSE  159 (173)
Q Consensus        86 ~~~l~~~~~~Aa~~G~~~~v~~LL~~Ga~~--~d----TpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~~~  159 (173)
                      ..+++.    ||+.|+++.|+.|++.|.++  .|    .||.+|+..||.++|++||++||-...-.-+|...+.-|-+.
T Consensus        37 f~elce----acR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~rdtf~G~RC~YgaLnd  112 (516)
T KOG0511|consen   37 FGELCE----ACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICSRDTFDGDRCHYGALND  112 (516)
T ss_pred             hHHHHH----HhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcccccccCcchhhhhhhhH
Confidence            445777    99999999999999999888  33    899999999999999999999998776666788776667788


Q ss_pred             HHHHHHHhhhhcc
Q 030701          160 EIKDLILNFSVQK  172 (173)
Q Consensus       160 ei~~lLl~~~~~~  172 (173)
                      .|..+|+.|---|
T Consensus       113 ~IR~mllsydi~K  125 (516)
T KOG0511|consen  113 RIRRMLLSYDILK  125 (516)
T ss_pred             HHHHHHHHHHHHH
Confidence            8998888875433

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=98.38  E-value=6.5e-07  Score=82.99  Aligned_cols=76  Identities=18%  Similarity=0.076  Sum_probs=61.3

Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCCC------CCcHHHHHHHcC---------CHHHHHHHHHcCCCc-------ccccCCC
Q 030701           92 YMGMLAVEGTYDKMEALLSQNIHP------VDILLMLAASEG---------DKPKIEELLRAGASY-------TVKDADG  149 (173)
Q Consensus        92 ~~~~Aa~~G~~~~v~~LL~~Ga~~------~dTpLh~Aa~~g---------~~~~v~~LL~~GAdi-------~~~d~~G  149 (173)
                      ++++|+..|+.++++.|++.|+++      ++||||+|+..+         ...+.++++..+++.       ++.|.+|
T Consensus       178 pL~~Aa~~~~~~iv~lLl~~gadin~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~~g  257 (743)
T TIGR00870       178 PLNAAACLGSPSIVALLSEDPADILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNHQG  257 (743)
T ss_pred             HHHHHHHhCCHHHHHHHhcCCcchhhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhcCCCC
Confidence            344599999999999999999887      669999999986         334667777666554       6789999


Q ss_pred             CchhhhcCc---hHHHHHHHh
Q 030701          150 RTALERAPS---EEIKDLILN  167 (173)
Q Consensus       150 ~TpLh~A~~---~ei~~lLl~  167 (173)
                      .||||+|+.   .++.++|++
T Consensus       258 ~TPL~~A~~~g~~~l~~lLL~  278 (743)
T TIGR00870       258 LTPLKLAAKEGRIVLFRLKLA  278 (743)
T ss_pred             CCchhhhhhcCCccHHHHHHH
Confidence            999999973   678888876

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=98.32  E-value=1.5e-06  Score=80.06  Aligned_cols=65  Identities=20%  Similarity=0.248  Sum_probs=58.1

Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCC------CCcHHHHHHHcCCHHHHHHHHHc-------CCCcccccCCCCchhhhcC
Q 030701           93 MGMLAVEGTYDKMEALLSQNIHP------VDILLMLAASEGDKPKIEELLRA-------GASYTVKDADGRTALERAP  157 (173)
Q Consensus        93 ~~~Aa~~G~~~~v~~LL~~Ga~~------~dTpLh~Aa~~g~~~~v~~LL~~-------GAdi~~~d~~G~TpLh~A~  157 (173)
                      +|+|+..|+.+++++|++.|+++      +.||||+|+..|+.+++++|+.+       |++++..+..|.+|+..+.
T Consensus       119 Lh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~~  196 (664)
T PTZ00322        119 LHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREVVQLLSRHSQCHFELGANAKPDSFTGKPPSLEDS  196 (664)
T ss_pred             HHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHHHHHHhCCCcccccCCCCCccccCCCCccchhh
Confidence            44599999999999999999987      45999999999999999999998       9999999988888877654

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=98.32  E-value=5.2e-07  Score=82.37  Aligned_cols=83  Identities=18%  Similarity=0.135  Sum_probs=71.9

Q ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHCCCCC------CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhcC
Q 030701           84 DDVEQYFNYMGMLAVEGTYDKMEALLSQNIHP------VDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAP  157 (173)
Q Consensus        84 ~~~~~l~~~~~~Aa~~G~~~~v~~LL~~Ga~~------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~  157 (173)
                      .+.+.+++    |+.+|+.++++.|++.-+-.      +.+|||+|++.|+.++++.|+.++..+|+.+..|.||||.|+
T Consensus        48 ~gfTalhh----a~Lng~~~is~llle~ea~ldl~d~kg~~plhlaaw~g~~e~vkmll~q~d~~na~~~e~~tplhlaa  123 (854)
T KOG0507|consen   48 SGFTLLHH----AVLNGQNQISKLLLDYEALLDLCDTKGILPLHLAAWNGNLEIVKMLLLQTDILNAVNIENETPLHLAA  123 (854)
T ss_pred             cchhHHHH----HHhcCchHHHHHHhcchhhhhhhhccCcceEEehhhcCcchHHHHHHhcccCCCcccccCcCccchhh
Confidence            34444666    99999999999999876544      449999999999999999999999999999999999999998


Q ss_pred             c---hHHHHHHHhhhh
Q 030701          158 S---EEIKDLILNFSV  170 (173)
Q Consensus       158 ~---~ei~~lLl~~~~  170 (173)
                      .   .+++.+|+.+..
T Consensus       124 qhgh~dvv~~Ll~~~a  139 (854)
T KOG0507|consen  124 QHGHLEVVFYLLKKNA  139 (854)
T ss_pred             hhcchHHHHHHHhcCC
Confidence            4   789999988764

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=98.26  E-value=2.6e-06  Score=70.71  Aligned_cols=80  Identities=24%  Similarity=0.186  Sum_probs=66.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHCCCCC------CCcHHHHHHHcCCHHHHHHHHHcCCCccccc-CCCCchhhhcC--
Q 030701           87 EQYFNYMGMLAVEGTYDKMEALLSQNIHP------VDILLMLAASEGDKPKIEELLRAGASYTVKD-ADGRTALERAP--  157 (173)
Q Consensus        87 ~~l~~~~~~Aa~~G~~~~v~~LL~~Ga~~------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d-~~G~TpLh~A~--  157 (173)
                      .+|++    +...|+.+-...|++---++      |-++|..|++.|+.+.|++||+.|||+|.+. ..+.||||+|+  
T Consensus        14 ~~Lle----~i~Kndt~~a~~LLs~vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALS   89 (396)
T KOG1710|consen   14 SPLLE----AIDKNDTEAALALLSTVRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALS   89 (396)
T ss_pred             hHHHH----HHccCcHHHHHHHHHHhhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHc
Confidence            56888    88999999888888642222      5599999999999999999999999999854 46899999997  


Q ss_pred             -chHHHHHHHhhhh
Q 030701          158 -SEEIKDLILNFSV  170 (173)
Q Consensus       158 -~~ei~~lLl~~~~  170 (173)
                       +.++..+|++.+.
T Consensus        90 Gn~dvcrllldaGa  103 (396)
T KOG1710|consen   90 GNQDVCRLLLDAGA  103 (396)
T ss_pred             CCchHHHHHHhccC
Confidence             6889999987654

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.15  E-value=1.6e-06  Score=80.08  Aligned_cols=64  Identities=23%  Similarity=0.194  Sum_probs=59.5

Q ss_pred             HHHHHcCCHHHHHHHHHCCCCC-------CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhcC
Q 030701           94 GMLAVEGTYDKMEALLSQNIHP-------VDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAP  157 (173)
Q Consensus        94 ~~Aa~~G~~~~v~~LL~~Ga~~-------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~  157 (173)
                      |+++..|..+++++||.+|+++       |.||||-|...|+++|+-.||.+|+...++|.+|..||..-.
T Consensus        57 H~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~i~Dkeglsplq~~~  127 (1267)
T KOG0783|consen   57 HIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLRIKDKEGLSPLQFLS  127 (1267)
T ss_pred             eeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCceEEecccCCCHHHHHh
Confidence            4699999999999999999998       449999999999999999999999999999999999998654

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=98.15  E-value=1.7e-06  Score=82.12  Aligned_cols=78  Identities=26%  Similarity=0.362  Sum_probs=69.5

Q ss_pred             HHHHcCCHHHHHHHHHCCCCC--CC----cHHHHHHHcCCHHHHHHHHHcCCCccc-ccCCCCchhhhcC---chHHHHH
Q 030701           95 MLAVEGTYDKMEALLSQNIHP--VD----ILLMLAASEGDKPKIEELLRAGASYTV-KDADGRTALERAP---SEEIKDL  164 (173)
Q Consensus        95 ~Aa~~G~~~~v~~LL~~Ga~~--~d----TpLh~Aa~~g~~~~v~~LL~~GAdi~~-~d~~G~TpLh~A~---~~ei~~l  164 (173)
                      +||..||.|.|++|+.+|+++  .|    +||.+|+-.||..+|+.|+++.|+++. .|+.+.|+|.+|+   ..+++++
T Consensus       763 ~acaggh~e~vellv~rganiehrdkkgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSlacsggr~~vvel  842 (2131)
T KOG4369|consen  763 SACAGGHREEVELLVVRGANIEHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSLACSGGRTRVVEL  842 (2131)
T ss_pred             ccccCccHHHHHHHHHhcccccccccccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEEecCCCcchHHHH
Confidence            599999999999999999998  33    999999999999999999999999987 5778999999998   3789999


Q ss_pred             HHhhhhcc
Q 030701          165 ILNFSVQK  172 (173)
Q Consensus       165 Ll~~~~~~  172 (173)
                      |++...++
T Consensus       843 Ll~~gank  850 (2131)
T KOG4369|consen  843 LLNAGANK  850 (2131)
T ss_pred             HHHhhccc
Confidence            99887764

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.14  E-value=4.1e-06  Score=73.98  Aligned_cols=77  Identities=25%  Similarity=0.276  Sum_probs=57.9

Q ss_pred             HHHHHcCCHHHHHHHHHCCC--CC------CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhcC---ch-HH
Q 030701           94 GMLAVEGTYDKMEALLSQNI--HP------VDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAP---SE-EI  161 (173)
Q Consensus        94 ~~Aa~~G~~~~v~~LL~~Ga--~~------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~---~~-ei  161 (173)
                      |.+....+.+.+..++....  .+      +.||||+|+..||.+++++|+.+|||+.++|.+|++|||.|+   ++ .+
T Consensus        25 h~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~~q~i  104 (560)
T KOG0522|consen   25 HWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTGNEQII  104 (560)
T ss_pred             chhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcCCHHHH
Confidence            34666666666655433221  11      569999999999999999999999999999999999999997   33 45


Q ss_pred             HHHHHhhhh
Q 030701          162 KDLILNFSV  170 (173)
Q Consensus       162 ~~lLl~~~~  170 (173)
                      ..+|..+..
T Consensus       105 ~~vlr~~~~  113 (560)
T KOG0522|consen  105 TEVLRHLKY  113 (560)
T ss_pred             HHHHHHhHH
Confidence            566665543

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.13  E-value=6.1e-06  Score=75.90  Aligned_cols=76  Identities=21%  Similarity=0.235  Sum_probs=66.5

Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCCC------CCcHHHHHHHcCCHHHHHHHHHcCCC--cccccCCCCchhhhcCc---hH
Q 030701           92 YMGMLAVEGTYDKMEALLSQNIHP------VDILLMLAASEGDKPKIEELLRAGAS--YTVKDADGRTALERAPS---EE  160 (173)
Q Consensus        92 ~~~~Aa~~G~~~~v~~LL~~Ga~~------~dTpLh~Aa~~g~~~~v~~LL~~GAd--i~~~d~~G~TpLh~A~~---~e  160 (173)
                      |+..||-.++.|++++|+++|+|+      |||.||.....-..++-..+|..|++  ..++|.+|-|||-+|+.   .+
T Consensus       243 PLSfAAC~nq~eivrlLl~~gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAaklGk~e  322 (782)
T KOG3676|consen  243 PLSFAACTNQPEIVRLLLAHGADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPLTLAAKLGKKE  322 (782)
T ss_pred             chHHHHHcCCHHHHHHHHhcCCCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCChHHHHHHhhhHH
Confidence            456799999999999999999999      77999999998888899999999999  99999999999999984   55


Q ss_pred             HHHHHHh
Q 030701          161 IKDLILN  167 (173)
Q Consensus       161 i~~lLl~  167 (173)
                      +.+-+++
T Consensus       323 mf~~ile  329 (782)
T KOG3676|consen  323 MFQHILE  329 (782)
T ss_pred             HHHHHHH
Confidence            5555443

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.92  E-value=2.6e-05  Score=68.64  Aligned_cols=70  Identities=24%  Similarity=0.393  Sum_probs=61.2

Q ss_pred             CHHHHHHHHHCCCCC------------CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhcCchHHHHHHHhh
Q 030701          101 TYDKMEALLSQNIHP------------VDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAPSEEIKDLILNF  168 (173)
Q Consensus       101 ~~~~v~~LL~~Ga~~------------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~~~ei~~lLl~~  168 (173)
                      -.+.+++|.+.+.+.            ..|+||+|+..|..++|.+||+.|+|+.++|..|+||..++.+++|...++.+
T Consensus       403 ~p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~nkdVk~~F~a~  482 (591)
T KOG2505|consen  403 EPDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSANKDVKSIFIAR  482 (591)
T ss_pred             chhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccccHHHHHHHHHH
Confidence            357788999888765            12999999999999999999999999999999999999999999999887755


Q ss_pred             hh
Q 030701          169 SV  170 (173)
Q Consensus       169 ~~  170 (173)
                      .+
T Consensus       483 ~~  484 (591)
T KOG2505|consen  483 RV  484 (591)
T ss_pred             HH
Confidence            43

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=97.87  E-value=1.9e-05  Score=49.78  Aligned_cols=32  Identities=22%  Similarity=0.172  Sum_probs=22.8

Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCCC------CCcHHHHH
Q 030701           92 YMGMLAVEGTYDKMEALLSQNIHP------VDILLMLA  123 (173)
Q Consensus        92 ~~~~Aa~~G~~~~v~~LL~~Ga~~------~dTpLh~A  123 (173)
                      ++|+||..|+.+++++|+..|+++      +.||||+|
T Consensus        19 ~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen   19 PLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             HHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            344599999999999999999988      55999987

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=97.70  E-value=3.5e-05  Score=73.52  Aligned_cols=80  Identities=30%  Similarity=0.332  Sum_probs=65.1

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHCCCCC-------CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhcCc---h
Q 030701           90 FNYMGMLAVEGTYDKMEALLSQNIHP-------VDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAPS---E  159 (173)
Q Consensus        90 ~~~~~~Aa~~G~~~~v~~LL~~Ga~~-------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~~---~  159 (173)
                      |.++-||+.-||..+|+.|+...+++       +||+|-+||..|..++|++||.+||+-..++-...|||.+|..   .
T Consensus       791 f~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSlacsggr~~vvelLl~~gankehrnvsDytPlsla~Sggy~  870 (2131)
T KOG4369|consen  791 FVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSLACSGGRTRVVELLLNAGANKEHRNVSDYTPLSLARSGGYT  870 (2131)
T ss_pred             chhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEEecCCCcchHHHHHHHhhccccccchhhcCchhhhcCcchH
Confidence            33444588889999999998887776       6689999999999999999999999888888888899988874   5


Q ss_pred             HHHHHHHhhh
Q 030701          160 EIKDLILNFS  169 (173)
Q Consensus       160 ei~~lLl~~~  169 (173)
                      +|+.+|+.++
T Consensus       871 ~iI~~llS~G  880 (2131)
T KOG4369|consen  871 KIIHALLSSG  880 (2131)
T ss_pred             HHHHHHhhcc
Confidence            7777777665

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=97.69  E-value=6.5e-05  Score=67.35  Aligned_cols=73  Identities=23%  Similarity=0.286  Sum_probs=62.8

Q ss_pred             HHHHHcCCHHHHHHHHHCCCCC--------CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhcC---chHHH
Q 030701           94 GMLAVEGTYDKMEALLSQNIHP--------VDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAP---SEEIK  162 (173)
Q Consensus        94 ~~Aa~~G~~~~v~~LL~~Ga~~--------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~---~~ei~  162 (173)
                      |+|+..|+-++|++++++|...        +.|+||.|+..++..+.++|++.||.....|.+|.||-.-|.   ..++.
T Consensus       904 h~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~vc~~lvdagasl~ktd~kg~tp~eraqqa~d~dla  983 (1004)
T KOG0782|consen  904 HYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAVCQLLVDAGASLRKTDSKGKTPQERAQQAGDPDLA  983 (1004)
T ss_pred             HHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHHHHHHHhcchhheecccCCCChHHHHHhcCCchHH
Confidence            3599999999999999998643        559999999999999999999999999999999999998775   35555


Q ss_pred             HHHH
Q 030701          163 DLIL  166 (173)
Q Consensus       163 ~lLl  166 (173)
                      ..|.
T Consensus       984 ayle  987 (1004)
T KOG0782|consen  984 AYLE  987 (1004)
T ss_pred             HHHh
Confidence            5554

>PF13606 Ank_3: Ankyrin repeat

Probab=97.46  E-value=0.00018  Score=39.72  Aligned_cols=24  Identities=17%  Similarity=0.243  Sum_probs=21.2

Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCCC
Q 030701           92 YMGMLAVEGTYDKMEALLSQNIHP  115 (173)
Q Consensus        92 ~~~~Aa~~G~~~~v~~LL~~Ga~~  115 (173)
                      ++|+||..|+.+++++||+.|+++
T Consensus         5 ~Lh~A~~~g~~e~v~~Ll~~gadv   28 (30)
T PF13606_consen    5 PLHLAASNGNIEIVKYLLEHGADV   28 (30)
T ss_pred             HHHHHHHhCCHHHHHHHHHcCCCC
Confidence            345699999999999999999886

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=97.35  E-value=0.00015  Score=67.91  Aligned_cols=66  Identities=24%  Similarity=0.242  Sum_probs=61.7

Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCCC------CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhcC
Q 030701           92 YMGMLAVEGTYDKMEALLSQNIHP------VDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAP  157 (173)
Q Consensus        92 ~~~~Aa~~G~~~~v~~LL~~Ga~~------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~  157 (173)
                      .+|+|+..|..-.++.|+..|+++      ++||||.+...|+...+..|+++||+.++.+.+|.+|+++|.
T Consensus       659 ~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~~~~~l~~a~  730 (785)
T KOG0521|consen  659 LLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDPDGKLPLDIAM  730 (785)
T ss_pred             hhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhccccccccccCccCcchhhHHh
Confidence            356799999999999999999988      669999999999999999999999999999999999999985

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=96.99  E-value=0.00035  Score=65.11  Aligned_cols=55  Identities=31%  Similarity=0.337  Sum_probs=50.0

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCC-CCchhhhcC---chHHHHHHHhhhh
Q 030701          116 VDILLMLAASEGDKPKIEELLRAGASYTVKDAD-GRTALERAP---SEEIKDLILNFSV  170 (173)
Q Consensus       116 ~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~-G~TpLh~A~---~~ei~~lLl~~~~  170 (173)
                      |.|+||+++..+..++++.||.+|+|++.+|.+ |+||||-|.   +.++..+|+.+.+
T Consensus        52 GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~  110 (1267)
T KOG0783|consen   52 GRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGR  110 (1267)
T ss_pred             ccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCC
Confidence            569999999999999999999999999999985 999999886   6889999988764

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=96.97  E-value=0.0014  Score=36.56  Aligned_cols=24  Identities=21%  Similarity=0.173  Sum_probs=21.7

Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCCC
Q 030701           92 YMGMLAVEGTYDKMEALLSQNIHP  115 (173)
Q Consensus        92 ~~~~Aa~~G~~~~v~~LL~~Ga~~  115 (173)
                      ++|+|+..|+.+++++||++|+++
T Consensus         5 pLh~A~~~~~~~~v~~Ll~~ga~~   28 (33)
T PF00023_consen    5 PLHYAAQRGHPDIVKLLLKHGADI   28 (33)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTSCT
T ss_pred             HHHHHHHHHHHHHHHHHHHCcCCC
Confidence            456699999999999999999987

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>smart00248 ANK ankyrin repeats

Probab=96.85  E-value=0.0024  Score=32.25  Aligned_cols=28  Identities=32%  Similarity=0.343  Sum_probs=23.7

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCcc
Q 030701          116 VDILLMLAASEGDKPKIEELLRAGASYT  143 (173)
Q Consensus       116 ~dTpLh~Aa~~g~~~~v~~LL~~GAdi~  143 (173)
                      ++||+|+++..++.++++.|+..|.+++
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~~~   29 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGADIN   29 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            3589999999999999999998888764

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=96.47  E-value=0.0036  Score=53.98  Aligned_cols=53  Identities=23%  Similarity=0.257  Sum_probs=48.0

Q ss_pred             cHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhcC---chHHHHHHHhhhh
Q 030701          118 ILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAP---SEEIKDLILNFSV  170 (173)
Q Consensus       118 TpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~---~~ei~~lLl~~~~  170 (173)
                      --|..||..|..+.|+.|++.|.++|..|....+||.+|.   ++.++++|++.++
T Consensus        38 ~elceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGA   93 (516)
T KOG0511|consen   38 GELCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGA   93 (516)
T ss_pred             HHHHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCC
Confidence            3578999999999999999999999999999999999986   6889999998763

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=96.12  E-value=0.011  Score=52.43  Aligned_cols=74  Identities=31%  Similarity=0.387  Sum_probs=57.3

Q ss_pred             HHHcCCHHHHHHHHHCCCCC--------CC--cHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhcCc---hHHH
Q 030701           96 LAVEGTYDKMEALLSQNIHP--------VD--ILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAPS---EEIK  162 (173)
Q Consensus        96 Aa~~G~~~~v~~LL~~Ga~~--------~d--TpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~~---~ei~  162 (173)
                      -..-.+++.+..--....++        .+  .++++|+..|.+..++-+.-.|.|++.+|.+.+|+||.|+.   .+++
T Consensus       476 ~fNFHNYD~L~h~~~~K~DPRR~~~~~~~~~~i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaEG~v~v~  555 (622)
T KOG0506|consen  476 KFNFHNYDSLRHPDNRKIDPRREGGPRENDTVINVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAEGHVEVV  555 (622)
T ss_pred             HhcccCchhhcccccccCCcccccCcccccchhhhhhhhhcCCHHHHHHHHHhcccccccccccchhheeecccCceeHH
Confidence            33345666655444444455        12  57899999999999999999999999999999999999984   5788


Q ss_pred             HHHHhhh
Q 030701          163 DLILNFS  169 (173)
Q Consensus       163 ~lLl~~~  169 (173)
                      ++|++.+
T Consensus       556 kfl~~~~  562 (622)
T KOG0506|consen  556 KFLLNAC  562 (622)
T ss_pred             HHHHHHH
Confidence            8888754

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=95.84  E-value=0.015  Score=52.64  Aligned_cols=79  Identities=22%  Similarity=0.299  Sum_probs=61.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHCCCCC----CC--cHHHHHHHcCCHHHHHHHHHcCC--CcccccCCCCchhhhcC-
Q 030701           87 EQYFNYMGMLAVEGTYDKMEALLSQNIHP----VD--ILLMLAASEGDKPKIEELLRAGA--SYTVKDADGRTALERAP-  157 (173)
Q Consensus        87 ~~l~~~~~~Aa~~G~~~~v~~LL~~Ga~~----~d--TpLh~Aa~~g~~~~v~~LL~~GA--di~~~d~~G~TpLh~A~-  157 (173)
                      ++++.    |+..+++-.+..+-..|.+.    .|  +.||+|+..|..++|+++|++|-  -.+..|..|.|+||-|+ 
T Consensus       868 eeil~----av~~~D~~klqE~h~~gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~  943 (1004)
T KOG0782|consen  868 EEILR----AVLSSDLMKLQETHLNGGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAAC  943 (1004)
T ss_pred             HHHHH----HHHhccHHHHHHHHhcCCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHH
Confidence            44677    88888876666665566555    22  89999999999999999999985  35667889999999886 


Q ss_pred             --chHHHHHHHhhh
Q 030701          158 --SEEIKDLILNFS  169 (173)
Q Consensus       158 --~~ei~~lLl~~~  169 (173)
                        +..+..+|.+.+
T Consensus       944 ~~~r~vc~~lvdag  957 (1004)
T KOG0782|consen  944 QRNRAVCQLLVDAG  957 (1004)
T ss_pred             hcchHHHHHHHhcc
Confidence              567888887654

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=95.63  E-value=0.022  Score=51.54  Aligned_cols=52  Identities=19%  Similarity=0.217  Sum_probs=46.3

Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCC------CCcHHHHHHHcCCHHHHHHHHHcCCCccc
Q 030701           93 MGMLAVEGTYDKMEALLSQNIHP------VDILLMLAASEGDKPKIEELLRAGASYTV  144 (173)
Q Consensus        93 ~~~Aa~~G~~~~v~~LL~~Ga~~------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~  144 (173)
                      +|+||..|++.+.++||=.|+|+      ++|+|.+|-..|..+|+.+|+.+|...+.
T Consensus       665 LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a~sqec~d~llq~gcp~e~  722 (749)
T KOG0705|consen  665 LHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQAGSQECIDVLLQYGCPDEC  722 (749)
T ss_pred             hhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhhcccHHHHHHHHHcCCCccc
Confidence            44699999999999999999988      56999999999999999999999986543

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=95.40  E-value=0.023  Score=44.89  Aligned_cols=46  Identities=20%  Similarity=0.214  Sum_probs=38.5

Q ss_pred             HHHHcCCHHHHHHHHHCC-CCC------CCcHHHHHHHcCCHHHHHHHHHcCC
Q 030701           95 MLAVEGTYDKMEALLSQN-IHP------VDILLMLAASEGDKPKIEELLRAGA  140 (173)
Q Consensus        95 ~Aa~~G~~~~v~~LL~~G-a~~------~dTpLh~Aa~~g~~~~v~~LL~~GA  140 (173)
                      +||..|..+.+.+|+.+| +.+      +.+.+.+|-..|+.+++..|.+.-.
T Consensus        18 caa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~   70 (223)
T KOG2384|consen   18 CAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDR   70 (223)
T ss_pred             HHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhc
Confidence            499999999999999999 566      3388899999999999999987633

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=94.88  E-value=0.015  Score=55.43  Aligned_cols=75  Identities=15%  Similarity=0.087  Sum_probs=52.5

Q ss_pred             HHHHHHcCCHHHHHHHHHC-CCCC------CCcHHHHHHHcCCHHHHHHHH-HcCCCcccccCCCCchhhhcCc---hHH
Q 030701           93 MGMLAVEGTYDKMEALLSQ-NIHP------VDILLMLAASEGDKPKIEELL-RAGASYTVKDADGRTALERAPS---EEI  161 (173)
Q Consensus        93 ~~~Aa~~G~~~~v~~LL~~-Ga~~------~dTpLh~Aa~~g~~~~v~~LL-~~GAdi~~~d~~G~TpLh~A~~---~ei  161 (173)
                      +|+++..++...++.+++. |...      ++-.+|+++ .++.+++-+|+ ..|..++++|..|+||||+|+.   +.+
T Consensus       578 lhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hfca-~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~wAa~~G~e~l  656 (975)
T KOG0520|consen  578 LHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHFCA-ALGYEWAFLPISADGVAIDIRDRNGWTPLHWAAFRGREKL  656 (975)
T ss_pred             HHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhHhh-hcCCceeEEEEeecccccccccCCCCcccchHhhcCHHHH
Confidence            4679999999999999985 4332      335677744 45556665554 6788899999999999999973   445


Q ss_pred             HHHHHhh
Q 030701          162 KDLILNF  168 (173)
Q Consensus       162 ~~lLl~~  168 (173)
                      +.-|.+.
T Consensus       657 ~a~l~~l  663 (975)
T KOG0520|consen  657 VASLIEL  663 (975)
T ss_pred             HHHHHHh
Confidence            5555443

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=94.60  E-value=0.083  Score=47.33  Aligned_cols=45  Identities=27%  Similarity=0.201  Sum_probs=39.3

Q ss_pred             HHHHHcCCHHHHHHHHHCCCCC------CCcHHHHHHHcCCHHHHHHHHHc
Q 030701           94 GMLAVEGTYDKMEALLSQNIHP------VDILLMLAASEGDKPKIEELLRA  138 (173)
Q Consensus        94 ~~Aa~~G~~~~v~~LL~~Ga~~------~dTpLh~Aa~~g~~~~v~~LL~~  138 (173)
                      |+|+..||.+.++.|+..|+++      +.+|||.|+..|+.+++..++.+
T Consensus        60 hlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~~q~i~~vlr~  110 (560)
T KOG0522|consen   60 HLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTGNEQIITEVLRH  110 (560)
T ss_pred             HHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcCCHHHHHHHHHH
Confidence            3499999999999999999987      44999999999999888777743

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=94.51  E-value=0.066  Score=47.80  Aligned_cols=47  Identities=19%  Similarity=0.120  Sum_probs=40.8

Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCCC------CCcHHHHHHHcCCHHHHHHHHHc
Q 030701           92 YMGMLAVEGTYDKMEALLSQNIHP------VDILLMLAASEGDKPKIEELLRA  138 (173)
Q Consensus        92 ~~~~Aa~~G~~~~v~~LL~~Ga~~------~dTpLh~Aa~~g~~~~v~~LL~~  138 (173)
                      ++|+||+.|+...+++|+-.|+|+      |.||+.+|-..||.++.+-|++.
T Consensus       170 pLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~GmtP~~~AR~~gH~~laeRl~e~  222 (669)
T KOG0818|consen  170 PLHVAAKAGQILQAELLAVYGADPGAQDSSGMTPVDYARQGGHHELAERLVEI  222 (669)
T ss_pred             hhHHHHhccchhhhhHHhhccCCCCCCCCCCCcHHHHHHhcCchHHHHHHHHH
Confidence            566799999999999999999999      44999999999999888766543

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=93.87  E-value=0.13  Score=48.39  Aligned_cols=50  Identities=26%  Similarity=0.272  Sum_probs=39.8

Q ss_pred             HHHcCCHHHHHHHHHCCCCC---------------CC-cHHHHHHHcCCHHHHHHHHHcCCCcccc
Q 030701           96 LAVEGTYDKMEALLSQNIHP---------------VD-ILLMLAASEGDKPKIEELLRAGASYTVK  145 (173)
Q Consensus        96 Aa~~G~~~~v~~LL~~Ga~~---------------~d-TpLh~Aa~~g~~~~v~~LL~~GAdi~~~  145 (173)
                      |...|.++.|+.++..-...               .| |||++||..++.||+++||+.|+++...
T Consensus        95 aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~~P  160 (822)
T KOG3609|consen   95 AIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIPIP  160 (822)
T ss_pred             HHHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCCCC
Confidence            88889999999888653221               22 9999999999999999999999987553

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=93.84  E-value=0.037  Score=52.20  Aligned_cols=40  Identities=40%  Similarity=0.557  Sum_probs=38.8

Q ss_pred             cHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhcC
Q 030701          118 ILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAP  157 (173)
Q Consensus       118 TpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~  157 (173)
                      |+||.|+..+..-.+++|+.+|+++|.+|..|++|+|.+.
T Consensus       658 s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~  697 (785)
T KOG0521|consen  658 SLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHAT  697 (785)
T ss_pred             chhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhh
Confidence            8999999999999999999999999999999999999886

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=93.04  E-value=0.16  Score=47.77  Aligned_cols=73  Identities=25%  Similarity=0.173  Sum_probs=56.2

Q ss_pred             HHHHcCCHHHHHHHHHCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCc----------ccccCCCCchhhhcC---chHH
Q 030701           95 MLAVEGTYDKMEALLSQNIHPVDILLMLAASEGDKPKIEELLRAGASY----------TVKDADGRTALERAP---SEEI  161 (173)
Q Consensus        95 ~Aa~~G~~~~v~~LL~~Ga~~~dTpLh~Aa~~g~~~~v~~LL~~GAdi----------~~~d~~G~TpLh~A~---~~ei  161 (173)
                      +|..+-+.+++++|++.....+| +|.+|...|..++|++++.+-.+.          .....-+.||+.+|+   +.||
T Consensus        68 iai~nenle~~eLLl~~~~~~gd-ALL~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEi  146 (822)
T KOG3609|consen   68 IAIDNENLELQELLLDTSSEEGD-ALLLAIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEI  146 (822)
T ss_pred             cccccccHHHHHHHhcCccccch-HHHHHHHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHH
Confidence            48888899999999998877655 555889999999999999664433          123345789999998   4788


Q ss_pred             HHHHHhh
Q 030701          162 KDLILNF  168 (173)
Q Consensus       162 ~~lLl~~  168 (173)
                      +++|+.-
T Consensus       147 l~~Ll~k  153 (822)
T KOG3609|consen  147 LQCLLTR  153 (822)
T ss_pred             HHHHHHc
Confidence            8888753

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=91.91  E-value=0.62  Score=36.98  Aligned_cols=54  Identities=26%  Similarity=0.209  Sum_probs=47.6

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcC-CCcccccCCCCchhhhcCc---hHHHHHHHhhh
Q 030701          116 VDILLMLAASEGDKPKIEELLRAG-ASYTVKDADGRTALERAPS---EEIKDLILNFS  169 (173)
Q Consensus       116 ~dTpLh~Aa~~g~~~~v~~LL~~G-Adi~~~d~~G~TpLh~A~~---~ei~~lLl~~~  169 (173)
                      +-|+|+.|+..|..+.+.+|+.+| +++...|..|.+++.+|..   .+++.+|.++-
T Consensus        12 gWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~   69 (223)
T KOG2384|consen   12 GWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFEND   69 (223)
T ss_pred             cchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHh
Confidence            449999999999999999999999 8999999999999999863   67888877654

>smart00248 ANK ankyrin repeats

Probab=91.76  E-value=0.37  Score=23.53  Aligned_cols=23  Identities=17%  Similarity=0.313  Sum_probs=19.3

Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCC
Q 030701           93 MGMLAVEGTYDKMEALLSQNIHP  115 (173)
Q Consensus        93 ~~~Aa~~G~~~~v~~LL~~Ga~~  115 (173)
                      +++++..|+.++++.|+..|.++
T Consensus         6 l~~~~~~~~~~~~~~ll~~~~~~   28 (30)
T smart00248        6 LHLAAENGNLEVVKLLLDKGADI   28 (30)
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCC
Confidence            34599999999999999988754

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	173
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	4e-07
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	5e-04
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	5e-04
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	2e-06
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	2e-04
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	9e-06
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	1e-05
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	4e-04
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	2e-05
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	8e-04
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-05
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-04
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-05
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	1e-04
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	3e-05
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	4e-04
3v30_A	172	DNA-binding protein rfxank; structural genomics co	4e-05
3v30_A	172	DNA-binding protein rfxank; structural genomics co	3e-04
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	4e-05
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	5e-05
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	4e-05
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	1e-04
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	6e-04
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	7e-04
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	6e-05
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	7e-05
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	3e-04
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	8e-05
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	8e-04
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	8e-05
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	5e-04
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	9e-05
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	9e-05
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-04
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-04
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-04
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-04
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	7e-04
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	1e-04
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	3e-04
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	4e-04
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	4e-04
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	5e-04
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	5e-04
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	6e-04
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	8e-04
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	8e-04
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	9e-04
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	9e-04
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	9e-04

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 47.5 bits (114), Expect = 4e-07
 Identities = 18/77 (23%), Positives = 30/77 (38%), Gaps = 7/77 (9%)

Query: 97  AVEGTYDKMEALLSQ--NIHPVDIL----LMLAASEGDKPKIEELLRAGASYTVKDADGR 150
           A     D ME L      ++ +D L    L  AA  G       LL  G+  ++    G 
Sbjct: 255 AERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGF 314

Query: 151 TALERAPSEEIKDLILN 167
           TA +   +E ++ ++  
Sbjct: 315 TAAQMG-NEAVQQILSE 330

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 38.6 bits (91), Expect = 5e-04
 Identities = 14/46 (30%), Positives = 26/46 (56%)

Query: 120 LMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAPSEEIKDLI 165
           L  AAS+        LL  GA  T+ +  G++A++ AP+ E+++ +
Sbjct: 128 LHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERL 173

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 38.6 bits (91), Expect = 5e-04
 Identities = 19/64 (29%), Positives = 24/64 (37%), Gaps = 7/64 (10%)

Query: 97  AVEGTYDKM-EALLSQ--NIHPVDIL----LMLAASEGDKPKIEELLRAGASYTVKDADG 149
           A  G  +K+   L     N H  D      L LAA       ++ LL+ GA    KD  G
Sbjct: 32  ARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGG 91

Query: 150 RTAL 153
              L
Sbjct: 92  LVPL 95

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 43.5 bits (104), Expect = 2e-06
 Identities = 19/46 (41%), Positives = 25/46 (54%)

Query: 120 LMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAPSEEIKDLI 165
           L+ A  EG    ++ LL  GA  TVK  DG TA E   ++ IK L+
Sbjct: 77  LLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKALL 122

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 38.5 bits (91), Expect = 2e-04
 Identities = 9/37 (24%), Positives = 14/37 (37%)

Query: 120 LMLAASEGDKPKIEELLRAGASYTVKDADGRTALERA 156
            M A   GD  ++++ +  G         GR  L  A
Sbjct: 11  FMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYA 47

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 43.2 bits (103), Expect = 9e-06
 Identities = 21/79 (26%), Positives = 32/79 (40%), Gaps = 8/79 (10%)

Query: 97  AVEGTYDKMEALLSQNIHPVDIL-------LMLAASEGDKPKIEELL-RAGASYTVKDAD 148
           A  G+   +E L       V+         L  A +EG       L+ + GA Y + D  
Sbjct: 148 ASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNK 207

Query: 149 GRTALERAPSEEIKDLILN 167
           G  A + A +E++K   LN
Sbjct: 208 GAKAEDVALNEQVKKFFLN 226

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 42.9 bits (102), Expect = 1e-05
 Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 7/58 (12%)

Query: 106 EALLSQ--NIHPVDIL-----LMLAASEGDKPKIEELLRAGASYTVKDADGRTALERA 156
             L     ++   D+      L +AA       +E L+  GA   V+D  G TALE A
Sbjct: 93  RLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELA 150

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 38.2 bits (90), Expect = 4e-04
 Identities = 10/37 (27%), Positives = 14/37 (37%), Gaps = 1/37 (2%)

Query: 120 LMLAASEGDKPKIEELLRAGASYTVKDADGRTALERA 156
              AA + D+ +    L         D +GRTAL   
Sbjct: 48  WWTAARKADE-QALSQLLEDRDVDAVDENGRTALLFV 83

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 41.6 bits (99), Expect = 2e-05
 Identities = 15/68 (22%), Positives = 25/68 (36%), Gaps = 6/68 (8%)

Query: 95  MLAVEGTYDKMEALLSQ--NIHPVDIL----LMLAASEGDKPKIEELLRAGASYTVKDAD 148
            + + G+      LL Q  + +  D      +  AA  G    ++ L+  GA   V D  
Sbjct: 41  QVMMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGT 100

Query: 149 GRTALERA 156
           G   +  A
Sbjct: 101 GALPIHLA 108

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 37.0 bits (87), Expect = 8e-04
 Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 1/35 (2%)

Query: 120 LMLAASEGDKPKIEELL-RAGASYTVKDADGRTAL 153
           L  AA+ GD  ++  LL R        +  G+TAL
Sbjct: 6   LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTAL 40

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 41.3 bits (98), Expect = 2e-05
 Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 7/69 (10%)

Query: 95  MLAVEGTYDKMEALLSQ--NIHPVD-----ILLMLAASEGDKPKIEELLRAGASYTVKDA 147
            + + G+    E LL      +  D       +  AA EG    +  L RAGA   V DA
Sbjct: 50  QVMMMGSAQVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDA 109

Query: 148 DGRTALERA 156
            GR  ++ A
Sbjct: 110 WGRLPVDLA 118

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 39.3 bits (93), Expect = 1e-04
 Identities = 11/37 (29%), Positives = 17/37 (45%)

Query: 120 LMLAASEGDKPKIEELLRAGASYTVKDADGRTALERA 156
           L  AA+ G    + +LL AGA     +  GR  ++  
Sbjct: 16  LATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVM 52

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 41.3 bits (98), Expect = 2e-05
 Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 7/69 (10%)

Query: 95  MLAVEGTYDKMEALLSQ--NIHPVD-----ILLMLAASEGDKPKIEELLRAGASYTVKDA 147
            + + G+    E LL      +  D       +  AA EG    +  L RAGA   V+DA
Sbjct: 50  QVMMMGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDA 109

Query: 148 DGRTALERA 156
            GR  ++ A
Sbjct: 110 WGRLPVDLA 118

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 39.4 bits (93), Expect = 1e-04
 Identities = 11/37 (29%), Positives = 19/37 (51%)

Query: 120 LMLAASEGDKPKIEELLRAGASYTVKDADGRTALERA 156
           L  AA+ G   ++  LL AGA+    ++ GR  ++  
Sbjct: 16  LATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVM 52

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 41.8 bits (99), Expect = 3e-05
 Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 7/58 (12%)

Query: 106 EALLSQ--NIHPVDIL-----LMLAASEGDKPKIEELLRAGASYTVKDADGRTALERA 156
             L     ++   D+      L +AA       +E L+  GA   V+D  G TALE A
Sbjct: 94  RLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELA 151

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 38.4 bits (90), Expect = 4e-04
 Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 1/37 (2%)

Query: 120 LMLAASEGDKPKIEELLRAGASYTVKDADGRTALERA 156
              AA + D+  + +LL         D +GRTAL   
Sbjct: 49  WWTAARKADEQALSQLL-EDRDVDAVDENGRTALLFV 84

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 40.9 bits (97), Expect = 4e-05
 Identities = 15/67 (22%), Positives = 30/67 (44%), Gaps = 7/67 (10%)

Query: 97  AVEGTYDKMEALLSQNIHPVDIL-------LMLAASEGDKPKIEELLRAGASYTVKDADG 149
           A +G  D+++  L +  + V+         L+ A++ G+   +  LL  GA   +   + 
Sbjct: 10  AAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKER 69

Query: 150 RTALERA 156
            +AL  A
Sbjct: 70  ESALSLA 76

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 38.6 bits (91), Expect = 3e-04
 Identities = 10/35 (28%), Positives = 18/35 (51%), Gaps = 1/35 (2%)

Query: 120 LMLAASEGDKPKIEELLRAGASY-TVKDADGRTAL 153
           +   A++G+  +++E LR G +     D  G T L
Sbjct: 6   IHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPL 40

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 41.5 bits (98), Expect = 4e-05
 Identities = 11/34 (32%), Positives = 13/34 (38%)

Query: 120 LMLAASEGDKPKIEELLRAGASYTVKDADGRTAL 153
           L  AA  G+   + E L         D  G TAL
Sbjct: 77  LHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTAL 110

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 41.1 bits (97), Expect = 5e-05
 Identities = 17/76 (22%), Positives = 33/76 (43%), Gaps = 7/76 (9%)

Query: 97  AVEGTYDKMEALLSQ---NIHPVDIL----LMLAASEGDKPKIEELLRAGASYTVKDADG 149
              G  D +E L +Q    ++  + L    L  AA +G    ++ LL  GA   +++ + 
Sbjct: 114 CHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEK 173

Query: 150 RTALERAPSEEIKDLI 165
           + A + A +     L+
Sbjct: 174 KLAFDMATNAACASLL 189

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 40.8 bits (97), Expect = 4e-05
 Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 6/66 (9%)

Query: 97  AVEGTYDKMEALLSQ--NIHPVDIL----LMLAASEGDKPKIEELLRAGASYTVKDADGR 150
           A +G    +   + Q   I+  D      LM AA+ G    +E LL+ GA   +      
Sbjct: 11  AAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRE 70

Query: 151 TALERA 156
           +AL  A
Sbjct: 71  SALSLA 76

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 39.7 bits (94), Expect = 1e-04
 Identities = 6/34 (17%), Positives = 13/34 (38%)

Query: 120 LMLAASEGDKPKIEELLRAGASYTVKDADGRTAL 153
           +   A++G+   +   +         D +G T L
Sbjct: 7   VHQLAAQGEMLYLATRIEQENVINHTDEEGFTPL 40

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 37.4 bits (88), Expect = 6e-04
 Identities = 9/37 (24%), Positives = 18/37 (48%)

Query: 120 LMLAASEGDKPKIEELLRAGASYTVKDADGRTALERA 156
           L+ A        ++ LL +GA  T++   G  +++ A
Sbjct: 106 LLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLA 142

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 37.4 bits (88), Expect = 7e-04
 Identities = 18/66 (27%), Positives = 25/66 (37%), Gaps = 6/66 (9%)

Query: 97  AVEGTYDKMEALLSQ--NIHPVDIL----LMLAASEGDKPKIEELLRAGASYTVKDADGR 150
           A  G    +E LL    +   +       L LA S+G    ++ LL  G      D +G 
Sbjct: 44  AAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGG 103

Query: 151 TALERA 156
           T L  A
Sbjct: 104 TPLLYA 109

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 39.7 bits (94), Expect = 6e-05
 Identities = 15/34 (44%), Positives = 21/34 (61%)

Query: 120 LMLAASEGDKPKIEELLRAGASYTVKDADGRTAL 153
           L +A+ +GD P +E LL+ G+   VKD  G T L
Sbjct: 14  LHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPL 47

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 39.7 bits (94), Expect = 7e-05
 Identities = 14/47 (29%), Positives = 21/47 (44%)

Query: 120 LMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAPSEEIKDLIL 166
           L  AA  G    ++ LL  GAS    +  G   ++    E +K L+L
Sbjct: 80  LHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLL 126

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 37.8 bits (89), Expect = 3e-04
 Identities = 13/63 (20%), Positives = 23/63 (36%), Gaps = 6/63 (9%)

Query: 97  AVEGTYDKMEALLSQ--NIHPVDIL----LMLAASEGDKPKIEELLRAGASYTVKDADGR 150
           +++G    +E LL    + +  D      L  A + G    +E LL+  A          
Sbjct: 18  SIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQND 77

Query: 151 TAL 153
           + L
Sbjct: 78  SPL 80

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 40.7 bits (96), Expect = 8e-05
 Identities = 12/61 (19%), Positives = 27/61 (44%), Gaps = 9/61 (14%)

Query: 105 MEALLSQ--NIHPVD-------ILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALER 155
           M ++L +  +            +LL+ AA  G+   +++ ++     +  + +G TAL  
Sbjct: 1   MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHN 60

Query: 156 A 156
           A
Sbjct: 61  A 61

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 37.6 bits (88), Expect = 8e-04
 Identities = 17/67 (25%), Positives = 27/67 (40%), Gaps = 7/67 (10%)

Query: 97  AVEGTYDKMEALLSQ--NIHPVDIL----LMLAASEGDKPKIEELLRAGASYTVKDA-DG 149
                Y  ++ L++   N++  D      L  AAS  D      L++ GA+       DG
Sbjct: 62  ICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDG 121

Query: 150 RTALERA 156
            TA E+ 
Sbjct: 122 ATAFEKC 128

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 40.8 bits (95), Expect = 8e-05
 Identities = 8/37 (21%), Positives = 17/37 (45%)

Query: 120 LMLAASEGDKPKIEELLRAGASYTVKDADGRTALERA 156
           L    S  +   ++ L++ G++    D  G + L +A
Sbjct: 135 LHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKA 171

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 38.5 bits (89), Expect = 5e-04
 Identities = 9/37 (24%), Positives = 17/37 (45%)

Query: 120 LMLAASEGDKPKIEELLRAGASYTVKDADGRTALERA 156
           L +AA  G+   ++ LL  GA   + +  G   ++  
Sbjct: 287 LNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFG 323

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 40.9 bits (97), Expect = 9e-05
 Identities = 13/37 (35%), Positives = 19/37 (51%)

Query: 120 LMLAASEGDKPKIEELLRAGASYTVKDADGRTALERA 156
           L +A+  G  P ++ LL+ GAS  V +    T L  A
Sbjct: 18  LHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMA 54

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 40.9 bits (97), Expect = 9e-05
 Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 6/66 (9%)

Query: 97  AVEGTYDKMEALLSQ--NIHPVDIL----LMLAASEGDKPKIEELLRAGASYTVKDADGR 150
           +  G    ++ LL    +++    L    L  AA +G    +  LL+ GAS     +DG 
Sbjct: 319 SHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGT 378

Query: 151 TALERA 156
           T L  A
Sbjct: 379 TPLAIA 384

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 39.8 bits (94), Expect = 2e-04
 Identities = 16/69 (23%), Positives = 28/69 (40%), Gaps = 7/69 (10%)

Query: 95  MLAVE-GTYDKMEALLSQ--NIHPVDIL----LMLAASEGDKPKIEELLRAGASYTVKDA 147
            +A   G    ++ LL +  + +  ++     L +AA  G     + LL+  A    K  
Sbjct: 19  HVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAK 78

Query: 148 DGRTALERA 156
           D +T L  A
Sbjct: 79  DDQTPLHCA 87

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 39.0 bits (92), Expect = 4e-04
 Identities = 19/69 (27%), Positives = 28/69 (40%), Gaps = 7/69 (10%)

Query: 95  MLAVEGTYDKM-EALLSQ--NIHPVDIL----LMLAASEGDKPKIEELLRAGASYTVKDA 147
            LA +  + +M   LLS+  N +  +      L L A EG  P  + L++ G        
Sbjct: 250 HLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTR 309

Query: 148 DGRTALERA 156
            G T L  A
Sbjct: 310 MGYTPLHVA 318

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 38.6 bits (91), Expect = 4e-04
 Identities = 14/63 (22%), Positives = 22/63 (34%), Gaps = 6/63 (9%)

Query: 97  AVEGTYDKMEALLSQ--NIHPVDIL----LMLAASEGDKPKIEELLRAGASYTVKDADGR 150
                 D ++ LL +  + H         L +AA +        LL+ G S   +   G 
Sbjct: 187 VHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGV 246

Query: 151 TAL 153
           T L
Sbjct: 247 TPL 249

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 38.6 bits (91), Expect = 5e-04
 Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 6/63 (9%)

Query: 97  AVEGTYDKMEALLSQ--NIHPVDIL----LMLAASEGDKPKIEELLRAGASYTVKDADGR 150
           A +   +   +LL    + +   +     L LAA EG    +  LL   A+  + +  G 
Sbjct: 220 AKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGL 279

Query: 151 TAL 153
           T L
Sbjct: 280 TPL 282

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 38.2 bits (90), Expect = 7e-04
 Identities = 13/63 (20%), Positives = 24/63 (38%), Gaps = 6/63 (9%)

Query: 97  AVEGTYDKMEALLSQ--NIHPVDIL----LMLAASEGDKPKIEELLRAGASYTVKDADGR 150
           A EG     + L+     +     +    L +A+  G+   ++ LL+  A    K   G 
Sbjct: 286 AQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGY 345

Query: 151 TAL 153
           + L
Sbjct: 346 SPL 348

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 40.4 bits (94), Expect = 1e-04
 Identities = 18/82 (21%), Positives = 31/82 (37%), Gaps = 10/82 (12%)

Query: 96  LAVEGTYDKMEALLSQNIHPVDIL-------LMLAASEGDKPKIEELLRAGASYTVKDAD 148
            +V+ T   +   L QN   +D         L       +   ++ LLR  AS  + +  
Sbjct: 178 RSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANES 237

Query: 149 GRTALERAP---SEEIKDLILN 167
           G T L+ A     E  ++L+  
Sbjct: 238 GETPLDIAKRLKHEHCEELLTQ 259

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 39.1 bits (92), Expect = 3e-04
 Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 9/57 (15%)

Query: 106 EALLSQ--NIHPVDIL-------LMLAASEGDKPKIEELLRAGASYTVKDADGRTAL 153
           + LL        +D+        L LAA  G+   +E+L  AGA   V +  G TAL
Sbjct: 26  DFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTAL 82

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 38.2 bits (90), Expect = 4e-04
 Identities = 13/57 (22%), Positives = 25/57 (43%), Gaps = 6/57 (10%)

Query: 106 EALLSQ--NIHPVDIL----LMLAASEGDKPKIEELLRAGASYTVKDADGRTALERA 156
           + LL    +I+ V+      L  A   G     E+L+  GA  ++ +  G   +++A
Sbjct: 89  QKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKA 145

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 38.8 bits (90), Expect = 4e-04
 Identities = 14/56 (25%), Positives = 21/56 (37%), Gaps = 7/56 (12%)

Query: 108 LLSQNIHPVDIL-------LMLAASEGDKPKIEELLRAGASYTVKDADGRTALERA 156
            + QN   +D         L  AA       ++ LL+  A     +  G TAL+ A
Sbjct: 211 FIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIA 266

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 38.6 bits (91), Expect = 5e-04
 Identities = 14/75 (18%), Positives = 29/75 (38%), Gaps = 6/75 (8%)

Query: 97  AVEGTYDKMEALLSQ--NIHPVDIL----LMLAASEGDKPKIEELLRAGASYTVKDADGR 150
           A +G  + ++ L+    +++  D      L  AA  G +     L+         +  G+
Sbjct: 207 AAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQ 266

Query: 151 TALERAPSEEIKDLI 165
           TA + A  + +  L 
Sbjct: 267 TAFDVADEDILGYLE 281

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 37.9 bits (89), Expect = 5e-04
 Identities = 14/61 (22%), Positives = 22/61 (36%), Gaps = 6/61 (9%)

Query: 99  EGTYDKMEALLSQ--NIHPVDIL----LMLAASEGDKPKIEELLRAGASYTVKDADGRTA 152
             T + +  +      ++  + L    L LA         E LL AG    ++D  G T 
Sbjct: 22  ALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTP 81

Query: 153 L 153
           L
Sbjct: 82  L 82

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 36.8 bits (86), Expect = 6e-04
 Identities = 13/37 (35%), Positives = 18/37 (48%)

Query: 120 LMLAASEGDKPKIEELLRAGASYTVKDADGRTALERA 156
           L+ AA  G   ++  L+  GA    KD +G T L  A
Sbjct: 28  LLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLA 64

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 36.2 bits (85), Expect = 8e-04
 Identities = 17/37 (45%), Positives = 20/37 (54%)

Query: 120 LMLAASEGDKPKIEELLRAGASYTVKDADGRTALERA 156
           L LAA  G    ++ LL AGA    KD +GRT L  A
Sbjct: 6   LHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLA 42

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 37.5 bits (88), Expect = 9e-04
 Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 5/62 (8%)

Query: 97  AVEGTYDKMEALLSQ--NIHPVDIL---LMLAASEGDKPKIEELLRAGASYTVKDADGRT 151
            V G++D +  LL    ++ P   L   +  AA  G    +  L+  G +   K +   T
Sbjct: 133 CVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGT 192

Query: 152 AL 153
            L
Sbjct: 193 PL 194

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 37.0 bits (87), Expect = 9e-04
 Identities = 12/37 (32%), Positives = 20/37 (54%)

Query: 120 LMLAASEGDKPKIEELLRAGASYTVKDADGRTALERA 156
           L  AA+ GD  ++  LL+   +   ++  GRTAL+  
Sbjct: 9   LASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVM 45

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 37.4 bits (88), Expect = 9e-04
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 6/57 (10%)

Query: 106 EALLSQ--NIHPVDIL----LMLAASEGDKPKIEELLRAGASYTVKDADGRTALERA 156
           E LL+   ++H V+I     L +AA E     +   L   +  T+K+ +G T L+ A
Sbjct: 161 EILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCA 217

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	173
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.68
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.66
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.59
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.57
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.56
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.55
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.54
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.54
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.54
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.54
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.53
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.53
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.52
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.52
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.52
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.51
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.51
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.5
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.5
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.49
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.49
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.49
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.49
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.48
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.48
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.48
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.48
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.48
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.48
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.47
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.47
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.47
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.47
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.47
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.47
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.47
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.46
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.46
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.45
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.45
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.45
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.45
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.45
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.45
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.45
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.44
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.44
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.44
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.44
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.44
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.44
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.44
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.44
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.43
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.43
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.43
2etb_A	256	Transient receptor potential cation channel subfam	99.43
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.42
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.42
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.42
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.41
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.41
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.41
2pnn_A	273	Transient receptor potential cation channel subfa	99.41
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.4
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.4
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.4
2rfa_A	232	Transient receptor potential cation channel subfa	99.4
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.4
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.4
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.4
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.39
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.39
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.39
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.39
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.39
2rfa_A	232	Transient receptor potential cation channel subfa	99.39
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.39
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.38
2etb_A	256	Transient receptor potential cation channel subfam	99.38
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.38
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.38
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.38
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.38
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.37
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.35
2pnn_A	273	Transient receptor potential cation channel subfa	99.35
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.35
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.34
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.34
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.33
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.33
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.32
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.32
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.32
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.32
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.31
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.31
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.31
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.31
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.29
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.28
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.25
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.23
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.21
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.2
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.18
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.18
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.14
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.13
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.08
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.07
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.06
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	98.77

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.68  E-value=2e-16  Score=107.27  Aligned_cols=78  Identities=31%  Similarity=0.387  Sum_probs=71.3

Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCC------CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhcC---chHHHH
Q 030701           93 MGMLAVEGTYDKMEALLSQNIHP------VDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAP---SEEIKD  163 (173)
Q Consensus        93 ~~~Aa~~G~~~~v~~LL~~Ga~~------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~---~~ei~~  163 (173)
                      +|+|+..|+.+++++|++.|+++      +.||||+|+..|+.+++++|++.|++++.+|.+|.||||+|.   +.++++
T Consensus         6 L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~~~~   85 (93)
T 1n0q_A            6 LHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVK   85 (93)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHH
Confidence            45599999999999999999987      449999999999999999999999999999999999999997   478999


Q ss_pred             HHHhhhh
Q 030701          164 LILNFSV  170 (173)
Q Consensus       164 lLl~~~~  170 (173)
                      +|+++++
T Consensus        86 ~Ll~~ga   92 (93)
T 1n0q_A           86 LLLEAGA   92 (93)
T ss_dssp             HHHHTTC
T ss_pred             HHHHcCC
Confidence            9987753

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.66  E-value=3.4e-16  Score=118.69  Aligned_cols=78  Identities=28%  Similarity=0.346  Sum_probs=70.3

Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCC------CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhcC---chHHHH
Q 030701           93 MGMLAVEGTYDKMEALLSQNIHP------VDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAP---SEEIKD  163 (173)
Q Consensus        93 ~~~Aa~~G~~~~v~~LL~~Ga~~------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~---~~ei~~  163 (173)
                      +++|+..|+.+++++|++.|+++      +.||||+|+..|+.+++++|++.|+|++.+|.+|+||||+|+   +.++++
T Consensus        74 Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~iv~  153 (169)
T 4gpm_A           74 LHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVK  153 (169)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHH
Confidence            34499999999999999999988      459999999999999999999999999999999999999997   478999


Q ss_pred             HHHhhhh
Q 030701          164 LILNFSV  170 (173)
Q Consensus       164 lLl~~~~  170 (173)
                      +|+++++
T Consensus       154 ~Ll~~GA  160 (169)
T 4gpm_A          154 LLEKQGG  160 (169)
T ss_dssp             HHHTC--
T ss_pred             HHHHCCC
Confidence            9998765

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.59  E-value=5.3e-15  Score=104.79  Aligned_cols=73  Identities=33%  Similarity=0.332  Sum_probs=66.3

Q ss_pred             HHHHHcCCHHHHHHHHHCCCCC------CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhcCchHHHHHHH
Q 030701           94 GMLAVEGTYDKMEALLSQNIHP------VDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAPSEEIKDLIL  166 (173)
Q Consensus        94 ~~Aa~~G~~~~v~~LL~~Ga~~------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~~~ei~~lLl  166 (173)
                      |+|+..|+.+++++|++.|+++      +.||||+|+..|+.+++++|+++|++++.+|.+|.||||+|...++.++|+
T Consensus        45 ~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~ll~  123 (123)
T 3aaa_C           45 HYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKALLQ  123 (123)
T ss_dssp             HHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCCHHHHHHHC
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHhCCHHHHHHhC
Confidence            3499999999999999999887      449999999999999999999999999999999999999998888888763

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.57  E-value=1.3e-14  Score=102.86  Aligned_cols=76  Identities=22%  Similarity=0.169  Sum_probs=70.0

Q ss_pred             HHHHcCCHHHHHHHHHCCCCC------CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhcC---chHHHHHH
Q 030701           95 MLAVEGTYDKMEALLSQNIHP------VDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAP---SEEIKDLI  165 (173)
Q Consensus        95 ~Aa~~G~~~~v~~LL~~Ga~~------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~---~~ei~~lL  165 (173)
                      .|+..|+.+++++|++.|+++      +.||||+|+..|+.+++++|++.|++++.+|.+|.||||+|+   +.+++++|
T Consensus        13 ~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~L   92 (123)
T 3aaa_C           13 WALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLL   92 (123)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHH
Confidence            399999999999999999887      449999999999999999999999999999999999999997   47899999


Q ss_pred             Hhhhh
Q 030701          166 LNFSV  170 (173)
Q Consensus       166 l~~~~  170 (173)
                      +++..
T Consensus        93 l~~ga   97 (123)
T 3aaa_C           93 LSKGA   97 (123)
T ss_dssp             HHTTC
T ss_pred             HHcCC
Confidence            88754

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.56  E-value=1.5e-14  Score=104.38  Aligned_cols=75  Identities=25%  Similarity=0.337  Sum_probs=67.8

Q ss_pred             HHHHcCCHHHHHHHHHCCCCC------CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhcC---chHHHHHH
Q 030701           95 MLAVEGTYDKMEALLSQNIHP------VDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAP---SEEIKDLI  165 (173)
Q Consensus        95 ~Aa~~G~~~~v~~LL~~Ga~~------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~---~~ei~~lL  165 (173)
                      +|+..|+.+++++|++.|+++      +.||||+|+..|+.+++++|+++|++++.+|.+|.||||+|.   +.+++++|
T Consensus        53 ~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~L  132 (136)
T 2jab_A           53 LATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEIL  132 (136)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHH
Confidence            499999999999999999887      449999999999999999999999999999999999999997   47899998


Q ss_pred             Hhhh
Q 030701          166 LNFS  169 (173)
Q Consensus       166 l~~~  169 (173)
                      ++++
T Consensus       133 l~~G  136 (136)
T 2jab_A          133 QKLN  136 (136)
T ss_dssp             HHC-
T ss_pred             HHcC
Confidence            8753

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.55  E-value=2.7e-14  Score=108.15  Aligned_cols=77  Identities=29%  Similarity=0.380  Sum_probs=68.3

Q ss_pred             HHHHHcCCHHHHHHHHHCCCCC------CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhcC---chHHHHH
Q 030701           94 GMLAVEGTYDKMEALLSQNIHP------VDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAP---SEEIKDL  164 (173)
Q Consensus        94 ~~Aa~~G~~~~v~~LL~~Ga~~------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~---~~ei~~l  164 (173)
                      ++|+..|+.++++.|++.|+++      +.||||+|+..|+.+++++|++.|+|+|.+|.+|+||||+|+   +.+++++
T Consensus        42 ~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~  121 (169)
T 4gpm_A           42 HHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKL  121 (169)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHH
Confidence            3499999999999999999887      449999999999999999999999999999999999999997   4789999


Q ss_pred             HHhhhh
Q 030701          165 ILNFSV  170 (173)
Q Consensus       165 Ll~~~~  170 (173)
                      |+++.+
T Consensus       122 Ll~~ga  127 (169)
T 4gpm_A          122 LISKGA  127 (169)
T ss_dssp             HHHTTC
T ss_pred             HHHcCC
Confidence            987654

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.54  E-value=2.5e-14  Score=100.07  Aligned_cols=78  Identities=26%  Similarity=0.345  Sum_probs=68.7

Q ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHCCCCC------CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhcC
Q 030701           84 DDVEQYFNYMGMLAVEGTYDKMEALLSQNIHP------VDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAP  157 (173)
Q Consensus        84 ~~~~~l~~~~~~Aa~~G~~~~v~~LL~~Ga~~------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~  157 (173)
                      +..+.++.    |+..|+.+++++|++.|+++      +.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+
T Consensus        23 ~g~t~L~~----A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~   98 (110)
T 2zgd_A           23 DLGKKLLE----AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISI   98 (110)
T ss_dssp             CHHHHHHH----HHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             ccchHHHH----HHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHHHHH
Confidence            34444555    99999999999999999887      459999999999999999999999999999999999999997


Q ss_pred             ---chHHHHHH
Q 030701          158 ---SEEIKDLI  165 (173)
Q Consensus       158 ---~~ei~~lL  165 (173)
                         +.+++++|
T Consensus        99 ~~~~~~~~~~L  109 (110)
T 2zgd_A           99 DNGNEDLAEIL  109 (110)
T ss_dssp             HHTCHHHHHHH
T ss_pred             HcCCHHHHHHh
Confidence               36777766

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.54  E-value=3e-14  Score=102.75  Aligned_cols=82  Identities=27%  Similarity=0.299  Sum_probs=72.7

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHCCCCC------CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhcC-
Q 030701           85 DVEQYFNYMGMLAVEGTYDKMEALLSQNIHP------VDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAP-  157 (173)
Q Consensus        85 ~~~~l~~~~~~Aa~~G~~~~v~~LL~~Ga~~------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~-  157 (173)
                      ..+.++.    |+..|+.+++++|++.|+++      +.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+ 
T Consensus        14 ~~t~l~~----A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~   89 (136)
T 2jab_A           14 LGKKLLE----AARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAF   89 (136)
T ss_dssp             HHHHHHH----HHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred             ccHHHHH----HHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHH
Confidence            3344555    99999999999999999887      449999999999999999999999999999999999999997 


Q ss_pred             --chHHHHHHHhhhh
Q 030701          158 --SEEIKDLILNFSV  170 (173)
Q Consensus       158 --~~ei~~lLl~~~~  170 (173)
                        +.+++++|+++..
T Consensus        90 ~~~~~~v~~Ll~~g~  104 (136)
T 2jab_A           90 IGHLEIAEVLLKHGA  104 (136)
T ss_dssp             HTCHHHHHHHHHTTC
T ss_pred             cCCHHHHHHHHHcCC
Confidence              4789999987653

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.54  E-value=2e-14  Score=103.49  Aligned_cols=74  Identities=26%  Similarity=0.262  Sum_probs=62.1

Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCC------CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhcCchHHHHHHH
Q 030701           93 MGMLAVEGTYDKMEALLSQNIHP------VDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAPSEEIKDLIL  166 (173)
Q Consensus        93 ~~~Aa~~G~~~~v~~LL~~Ga~~------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~~~ei~~lLl  166 (173)
                      +|+|+..|+.+++++|++.|+++      +.||||+|+..|+.+++++|++.|++++.+|..|.||||+|......+++.
T Consensus        47 L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~l~  126 (137)
T 3c5r_A           47 LHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLL  126 (137)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHHHHHS
T ss_pred             HHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHHHHHh
Confidence            34499999999999999998877      349999999999999999999999999999999999999998765555543

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.54  E-value=1.9e-14  Score=116.80  Aligned_cols=80  Identities=16%  Similarity=0.198  Sum_probs=72.8

Q ss_pred             HHHHHHc---CCHHHHHHHHHCCCCC------CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhcC---chH
Q 030701           93 MGMLAVE---GTYDKMEALLSQNIHP------VDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAP---SEE  160 (173)
Q Consensus        93 ~~~Aa~~---G~~~~v~~LL~~Ga~~------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~---~~e  160 (173)
                      +|+|+..   |+.+++++|++.|+++      +.||||+|+..|+.+++++|+++|||++.+|.+|.||||+|+   +.+
T Consensus       173 Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~  252 (278)
T 1dcq_A          173 LHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEH  252 (278)
T ss_dssp             HHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             chHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHH
Confidence            3459999   8999999999999988      459999999999999999999999999999999999999997   478


Q ss_pred             HHHHHHhhhhcc
Q 030701          161 IKDLILNFSVQK  172 (173)
Q Consensus       161 i~~lLl~~~~~~  172 (173)
                      ++++|+++...+
T Consensus       253 ~v~~Ll~~ga~~  264 (278)
T 1dcq_A          253 CEELLTQALSGR  264 (278)
T ss_dssp             HHHHHHHHHTTC
T ss_pred             HHHHHHHcCCCC
Confidence            999999887643

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.53  E-value=1.3e-14  Score=117.15  Aligned_cols=75  Identities=25%  Similarity=0.197  Sum_probs=66.5

Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCCC------CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhcCc-hHHHHH
Q 030701           92 YMGMLAVEGTYDKMEALLSQNIHP------VDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAPS-EEIKDL  164 (173)
Q Consensus        92 ~~~~Aa~~G~~~~v~~LL~~Ga~~------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~~-~ei~~l  164 (173)
                      ++++|+..|+.++|++|++.|+++      +.||||+|+..|+.++|++|+++|||++.+|.+|+||||+|+. .+++++
T Consensus       155 pL~~A~~~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~~~i~~l  234 (269)
T 4b93_B          155 PLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQNSKIMEL  234 (269)
T ss_dssp             HHHHHHHTTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCSGGGSCTTCHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHhCCcHHHH
Confidence            344599999999999999999988      5599999999999999999999999999999999999999974 566766


Q ss_pred             HH
Q 030701          165 IL  166 (173)
Q Consensus       165 Ll  166 (173)
                      |.
T Consensus       235 L~  236 (269)
T 4b93_B          235 LQ  236 (269)
T ss_dssp             TT
T ss_pred             HH
Confidence            64

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.53  E-value=5.5e-14  Score=103.87  Aligned_cols=76  Identities=28%  Similarity=0.279  Sum_probs=67.4

Q ss_pred             HHHHHcCCHHHHHHHHHCCCCC------CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhcCc--hHHHHHH
Q 030701           94 GMLAVEGTYDKMEALLSQNIHP------VDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAPS--EEIKDLI  165 (173)
Q Consensus        94 ~~Aa~~G~~~~v~~LL~~Ga~~------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~~--~ei~~lL  165 (173)
                      ++|+..|+.+++++|++.|+++      +.||||+|+..|+.+++++|+++|++++.+|.+|.||||+|..  .+++++|
T Consensus        80 ~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~~~~~i~~~L  159 (165)
T 3twr_A           80 HNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKDGDTDIQDLL  159 (165)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTGGGSCTTCHHHHHHH
T ss_pred             HHHHHcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCChhHhHhcCChHHHHHH
Confidence            3499999999999999999887      4499999999999999999999999999999999999999874  6899998


Q ss_pred             Hhhh
Q 030701          166 LNFS  169 (173)
Q Consensus       166 l~~~  169 (173)
                      ++..
T Consensus       160 ~~~g  163 (165)
T 3twr_A          160 RGDA  163 (165)
T ss_dssp             HTC-
T ss_pred             hhcc
Confidence            8764

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.52  E-value=1.4e-14  Score=101.29  Aligned_cols=76  Identities=28%  Similarity=0.305  Sum_probs=69.7

Q ss_pred             HHHHcCCHHHHHHHHHCCCCC------CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhcC---chHHHHHH
Q 030701           95 MLAVEGTYDKMEALLSQNIHP------VDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAP---SEEIKDLI  165 (173)
Q Consensus        95 ~Aa~~G~~~~v~~LL~~Ga~~------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~---~~ei~~lL  165 (173)
                      +|+..|+.+++++|++.|+++      +.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+   +.+++++|
T Consensus        15 ~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A~~~~~~~~~~~L   94 (115)
T 2l6b_A           15 NAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLL   94 (115)
T ss_dssp             HHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHHHTTTCHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCCHHHHHHH
Confidence            499999999999999999887      449999999999999999999999999999999999999997   37899999


Q ss_pred             Hhhhh
Q 030701          166 LNFSV  170 (173)
Q Consensus       166 l~~~~  170 (173)
                      +++++
T Consensus        95 l~~ga   99 (115)
T 2l6b_A           95 DAKGA   99 (115)
T ss_dssp             HTTSS
T ss_pred             HHcCC
Confidence            87654

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.52  E-value=5.1e-14  Score=104.03  Aligned_cols=77  Identities=27%  Similarity=0.172  Sum_probs=70.5

Q ss_pred             HHHHHcCCHHHHHHHHHCCCCC------CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhcC---chHHHHH
Q 030701           94 GMLAVEGTYDKMEALLSQNIHP------VDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAP---SEEIKDL  164 (173)
Q Consensus        94 ~~Aa~~G~~~~v~~LL~~Ga~~------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~---~~ei~~l  164 (173)
                      ++|+..|+.+++++|++.|+++      +.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+   +.+++++
T Consensus        47 ~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~  126 (165)
T 3twr_A           47 HFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKL  126 (165)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHH
T ss_pred             HHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHHHHcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHH
Confidence            3499999999999999999987      449999999999999999999999999999999999999997   4789999


Q ss_pred             HHhhhh
Q 030701          165 ILNFSV  170 (173)
Q Consensus       165 Ll~~~~  170 (173)
                      |+++..
T Consensus       127 Ll~~ga  132 (165)
T 3twr_A          127 LLQHGA  132 (165)
T ss_dssp             HHHTTC
T ss_pred             HHHcCC
Confidence            988754

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.52  E-value=5.5e-14  Score=101.13  Aligned_cols=76  Identities=22%  Similarity=0.288  Sum_probs=70.0

Q ss_pred             HHHHcCCHHHHHHHHHCCCCC------CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhcC---chHHHHHH
Q 030701           95 MLAVEGTYDKMEALLSQNIHP------VDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAP---SEEIKDLI  165 (173)
Q Consensus        95 ~Aa~~G~~~~v~~LL~~Ga~~------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~---~~ei~~lL  165 (173)
                      +|+..|+.+++++|++.|+++      +.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+   +.+++++|
T Consensus        16 ~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L   95 (137)
T 3c5r_A           16 IASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLL   95 (137)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCHHHHHHHcCCHHHHHHH
Confidence            499999999999999999987      449999999999999999999999999999999999999997   47899999


Q ss_pred             Hhhhh
Q 030701          166 LNFSV  170 (173)
Q Consensus       166 l~~~~  170 (173)
                      +++..
T Consensus        96 l~~ga  100 (137)
T 3c5r_A           96 LSYGA  100 (137)
T ss_dssp             HHTTC
T ss_pred             HHcCC
Confidence            88754

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.51  E-value=6.6e-14  Score=105.07  Aligned_cols=75  Identities=20%  Similarity=0.276  Sum_probs=46.8

Q ss_pred             HHHHcCCHHHHHHHHHCCCCC------CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhcCc---hHHHHHH
Q 030701           95 MLAVEGTYDKMEALLSQNIHP------VDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAPS---EEIKDLI  165 (173)
Q Consensus        95 ~Aa~~G~~~~v~~LL~~Ga~~------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~~---~ei~~lL  165 (173)
                      +|+..|+.+++++|++.|+++      +.||||+|+..|+.+++++|+++|++++.+|.+|.||||+|..   .+++++|
T Consensus        78 ~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~L  157 (179)
T 3f6q_A           78 LAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERA  157 (179)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGSCHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCcHHHHHHHHHHHHHHHH
Confidence            366666666666666666655      2366666666666666666666666666666666666666652   4555555


Q ss_pred             Hhhh
Q 030701          166 LNFS  169 (173)
Q Consensus       166 l~~~  169 (173)
                      +++.
T Consensus       158 ~~~g  161 (179)
T 3f6q_A          158 EKMG  161 (179)
T ss_dssp             HHTT
T ss_pred             HHhh
Confidence            5544

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.51  E-value=6.7e-14  Score=104.07  Aligned_cols=78  Identities=22%  Similarity=0.299  Sum_probs=70.3

Q ss_pred             HHHHHcCCHHHHHHHHHCCCCC------CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhcC---chHHHHH
Q 030701           94 GMLAVEGTYDKMEALLSQNIHP------VDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAP---SEEIKDL  164 (173)
Q Consensus        94 ~~Aa~~G~~~~v~~LL~~Ga~~------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~---~~ei~~l  164 (173)
                      ++|+..|+.+++++|++.|+++      +.||||+|+..|+.+++++|++.|++++.+|.+|.||||+|.   +.+++++
T Consensus        74 ~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~  153 (172)
T 3v30_A           74 SLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQV  153 (172)
T ss_dssp             HHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHhCcHHHHHH
Confidence            3499999999999999999887      449999999999999999999999999999999999999997   4789999


Q ss_pred             HHhhhhc
Q 030701          165 ILNFSVQ  171 (173)
Q Consensus       165 Ll~~~~~  171 (173)
                      |+++..+
T Consensus       154 L~~~~~~  160 (172)
T 3v30_A          154 IENHILK  160 (172)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9887653

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.50  E-value=5.7e-14  Score=102.88  Aligned_cols=74  Identities=32%  Similarity=0.429  Sum_probs=49.7

Q ss_pred             HHHcCCHHHHHHHHHCCCCC------CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhcC---chHHHHHHH
Q 030701           96 LAVEGTYDKMEALLSQNIHP------VDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAP---SEEIKDLIL  166 (173)
Q Consensus        96 Aa~~G~~~~v~~LL~~Ga~~------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~---~~ei~~lLl  166 (173)
                      |+..|+.+++++|++.|+++      +.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+   +.+++++|+
T Consensus        41 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll  120 (153)
T 1awc_B           41 AAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLI  120 (153)
T ss_dssp             HHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            77777777777777766655      336777777777777777777777777777777777777665   356666666


Q ss_pred             hhh
Q 030701          167 NFS  169 (173)
Q Consensus       167 ~~~  169 (173)
                      ++.
T Consensus       121 ~~g  123 (153)
T 1awc_B          121 KYG  123 (153)
T ss_dssp             HTT
T ss_pred             HcC
Confidence            553

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.50  E-value=5.7e-14  Score=111.13  Aligned_cols=79  Identities=22%  Similarity=0.195  Sum_probs=71.8

Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCCC-------CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhcC---chHH
Q 030701           92 YMGMLAVEGTYDKMEALLSQNIHP-------VDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAP---SEEI  161 (173)
Q Consensus        92 ~~~~Aa~~G~~~~v~~LL~~Ga~~-------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~---~~ei  161 (173)
                      ++++|+..|+.+++++|++.|+++       +.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+   +.++
T Consensus       161 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~  240 (282)
T 1oy3_D          161 PLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPIL  240 (282)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCHHHHHHHcCCcHH
Confidence            344599999999999999999987       349999999999999999999999999999999999999997   4789


Q ss_pred             HHHHHhhhh
Q 030701          162 KDLILNFSV  170 (173)
Q Consensus       162 ~~lLl~~~~  170 (173)
                      +++|+++++
T Consensus       241 v~~Ll~~ga  249 (282)
T 1oy3_D          241 ARLLRAHGA  249 (282)
T ss_dssp             HHHHHHTTC
T ss_pred             HHHHHHcCC
Confidence            999998765

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.49  E-value=2.1e-14  Score=103.52  Aligned_cols=75  Identities=28%  Similarity=0.289  Sum_probs=68.8

Q ss_pred             HHHHcCCHHHHHHHHHCCCCC-------CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhcC---chHHHHH
Q 030701           95 MLAVEGTYDKMEALLSQNIHP-------VDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAP---SEEIKDL  164 (173)
Q Consensus        95 ~Aa~~G~~~~v~~LL~~Ga~~-------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~---~~ei~~l  164 (173)
                      +|+. |+.+++++|++.|+++       +.||||+|+..|+.+++++|++.|++++.+|..|.||||+|.   +.+++++
T Consensus        51 ~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~  129 (136)
T 1d9s_A           51 VMMM-GSAQVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARY  129 (136)
T ss_dssp             TSTT-SCHHHHHHHHHHTCCSSCCBTTTTBCHHHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHH
T ss_pred             HHHc-CCHHHHHHHHHCCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHH
Confidence            3999 9999999999999887       359999999999999999999999999999999999999997   4789999


Q ss_pred             HHhhhh
Q 030701          165 ILNFSV  170 (173)
Q Consensus       165 Ll~~~~  170 (173)
                      |+++++
T Consensus       130 Ll~~Ga  135 (136)
T 1d9s_A          130 LHAATG  135 (136)
T ss_dssp             HHHHHC
T ss_pred             HHHcCC
Confidence            988764

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.49  E-value=1.4e-13  Score=96.33  Aligned_cols=76  Identities=32%  Similarity=0.391  Sum_probs=69.9

Q ss_pred             HHHHcCCHHHHHHHHHCCCCC------CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhcC---chHHHHHH
Q 030701           95 MLAVEGTYDKMEALLSQNIHP------VDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAP---SEEIKDLI  165 (173)
Q Consensus        95 ~Aa~~G~~~~v~~LL~~Ga~~------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~---~~ei~~lL  165 (173)
                      +|+..|+.+++++|++.|+++      +.||||+|+..|+.+++++|++.|++++.+|..|.||||+|.   +.+++++|
T Consensus        41 ~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L  120 (126)
T 1n0r_A           41 LAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL  120 (126)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHH
Confidence            499999999999999999887      449999999999999999999999999999999999999997   47899999


Q ss_pred             Hhhhh
Q 030701          166 LNFSV  170 (173)
Q Consensus       166 l~~~~  170 (173)
                      +++++
T Consensus       121 l~~Ga  125 (126)
T 1n0r_A          121 LEAGA  125 (126)
T ss_dssp             HHHTC
T ss_pred             HHcCC
Confidence            88764

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.49  E-value=1.6e-13  Score=102.90  Aligned_cols=77  Identities=22%  Similarity=0.273  Sum_probs=70.6

Q ss_pred             HHHHHcCCHHHHHHHHHCCCCC------CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhcC---chHHHHH
Q 030701           94 GMLAVEGTYDKMEALLSQNIHP------VDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAP---SEEIKDL  164 (173)
Q Consensus        94 ~~Aa~~G~~~~v~~LL~~Ga~~------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~---~~ei~~l  164 (173)
                      ++|+..|+.+++++|++.|+++      +.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+   +.+++++
T Consensus        44 ~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~  123 (179)
T 3f6q_A           44 HWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAED  123 (179)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             HHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHH
Confidence            3499999999999999999988      449999999999999999999999999999999999999997   4789999


Q ss_pred             HHhhhh
Q 030701          165 ILNFSV  170 (173)
Q Consensus       165 Ll~~~~  170 (173)
                      |+++..
T Consensus       124 Ll~~ga  129 (179)
T 3f6q_A          124 LVANGA  129 (179)
T ss_dssp             HHHTTC
T ss_pred             HHHCCC
Confidence            988754

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.49  E-value=5.4e-14  Score=110.71  Aligned_cols=74  Identities=15%  Similarity=0.108  Sum_probs=38.9

Q ss_pred             HHHcCCHHHHHHHHHCCCCC------CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCC-chhhhcC-----chHHHH
Q 030701           96 LAVEGTYDKMEALLSQNIHP------VDILLMLAASEGDKPKIEELLRAGASYTVKDADGR-TALERAP-----SEEIKD  163 (173)
Q Consensus        96 Aa~~G~~~~v~~LL~~Ga~~------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~-TpLh~A~-----~~ei~~  163 (173)
                      |+..|+.+++++|++.|+++      +.||||+|+..|+.+++++|+++|++++.++..|. ||||+|.     ..++++
T Consensus        77 A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~  156 (239)
T 1ycs_B           77 AVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQ  156 (239)
T ss_dssp             HHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHH
T ss_pred             HHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhccHHHHH
Confidence            55555555555555555544      22555555555555555555555555555554444 5555551     134555


Q ss_pred             HHHhhh
Q 030701          164 LILNFS  169 (173)
Q Consensus       164 lLl~~~  169 (173)
                      +|+++.
T Consensus       157 ~Ll~~~  162 (239)
T 1ycs_B          157 FLYGVQ  162 (239)
T ss_dssp             HHHHHH
T ss_pred             HHHHhh
Confidence            555443

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.48  E-value=2.8e-14  Score=102.85  Aligned_cols=75  Identities=17%  Similarity=0.148  Sum_probs=68.9

Q ss_pred             HHHHcCCHHHHHHHHHCCCCC------CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCC-CCchhhhcC---chHHHHH
Q 030701           95 MLAVEGTYDKMEALLSQNIHP------VDILLMLAASEGDKPKIEELLRAGASYTVKDAD-GRTALERAP---SEEIKDL  164 (173)
Q Consensus        95 ~Aa~~G~~~~v~~LL~~Ga~~------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~-G~TpLh~A~---~~ei~~l  164 (173)
                      +|+..|+.+++++|++.|+++      +.||||+|+. |+.+++++|++.|++++.+|.. |.||||+|+   +.+++++
T Consensus        18 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~   96 (136)
T 1d9s_A           18 TAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVV   96 (136)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTBCHHHHHHHHTCHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCCCHHHHHHHcCCHHHHHH
Confidence            499999999999999999887      4499999999 9999999999999999999999 999999997   4789999


Q ss_pred             HHhhhh
Q 030701          165 ILNFSV  170 (173)
Q Consensus       165 Ll~~~~  170 (173)
                      |+++..
T Consensus        97 Ll~~ga  102 (136)
T 1d9s_A           97 LHRAGA  102 (136)
T ss_dssp             HHHTCC
T ss_pred             HHHcCC
Confidence            987653

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.48  E-value=1.1e-13  Score=102.88  Aligned_cols=77  Identities=21%  Similarity=0.191  Sum_probs=70.2

Q ss_pred             HHHHHcCCHHHHHHHHHCCCCC------CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhcC---chHHHHH
Q 030701           94 GMLAVEGTYDKMEALLSQNIHP------VDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAP---SEEIKDL  164 (173)
Q Consensus        94 ~~Aa~~G~~~~v~~LL~~Ga~~------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~---~~ei~~l  164 (173)
                      ++|+..|+.+++++|++.|+++      +.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+   +.+++++
T Consensus        41 ~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~  120 (172)
T 3v30_A           41 IWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEA  120 (172)
T ss_dssp             HHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHH
Confidence            3499999999999999999887      449999999999999999999999999999999999999997   4789999


Q ss_pred             HHhhhh
Q 030701          165 ILNFSV  170 (173)
Q Consensus       165 Ll~~~~  170 (173)
                      |+++..
T Consensus       121 Ll~~ga  126 (172)
T 3v30_A          121 LLARGA  126 (172)
T ss_dssp             HHHTTC
T ss_pred             HHHcCC
Confidence            987653

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.48  E-value=1.3e-13  Score=101.14  Aligned_cols=77  Identities=27%  Similarity=0.280  Sum_probs=69.0

Q ss_pred             HHHHHcCCHHHHHHHHHCCCCC------CCcHHHHHHHcCCHHHHHHHHHcCCC-cccccCCCCchhhhcC---chHHHH
Q 030701           94 GMLAVEGTYDKMEALLSQNIHP------VDILLMLAASEGDKPKIEELLRAGAS-YTVKDADGRTALERAP---SEEIKD  163 (173)
Q Consensus        94 ~~Aa~~G~~~~v~~LL~~Ga~~------~dTpLh~Aa~~g~~~~v~~LL~~GAd-i~~~d~~G~TpLh~A~---~~ei~~  163 (173)
                      |+|+..|+.+++++|++.|+++      +.||||+|+..|+.+++++|++.|++ ++.++..|.||||+|.   +.++++
T Consensus        75 ~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~  154 (162)
T 1ihb_A           75 HDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVS  154 (162)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHH
Confidence            3499999999999999999887      44999999999999999999999998 6999999999999997   478999


Q ss_pred             HHHhhhh
Q 030701          164 LILNFSV  170 (173)
Q Consensus       164 lLl~~~~  170 (173)
                      +|+++++
T Consensus       155 ~Ll~~GA  161 (162)
T 1ihb_A          155 LMQANGA  161 (162)
T ss_dssp             HHHHTC-
T ss_pred             HHHHhCC
Confidence            9988764

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.48  E-value=1.2e-13  Score=108.78  Aligned_cols=78  Identities=19%  Similarity=0.185  Sum_probs=62.7

Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCC------CCcHHHHHHHcCCHHHHHHHHHcCCCccccc-CCCCchhhhc--C---chH
Q 030701           93 MGMLAVEGTYDKMEALLSQNIHP------VDILLMLAASEGDKPKIEELLRAGASYTVKD-ADGRTALERA--P---SEE  160 (173)
Q Consensus        93 ~~~Aa~~G~~~~v~~LL~~Ga~~------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d-~~G~TpLh~A--~---~~e  160 (173)
                      +++|+..|+.+++++|++.|+++      +.||||+|+..|+.+++++|++.|++++..+ .+|.||||+|  .   +.+
T Consensus        58 Lh~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~  137 (229)
T 2vge_A           58 LHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYAD  137 (229)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHH
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHH
Confidence            34488888888888888888877      4488888888888888888888888888876 5888888888  4   367


Q ss_pred             HHHHHHhhhh
Q 030701          161 IKDLILNFSV  170 (173)
Q Consensus       161 i~~lLl~~~~  170 (173)
                      ++++|+++..
T Consensus       138 ~v~~Ll~~ga  147 (229)
T 2vge_A          138 CATYLADVEQ  147 (229)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHcCC
Confidence            8888877654

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.48  E-value=1.6e-13  Score=102.20  Aligned_cols=74  Identities=27%  Similarity=0.377  Sum_probs=56.3

Q ss_pred             HHHHcCCHHHHHHHHHCCCCC------CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhcC---chHHHHHH
Q 030701           95 MLAVEGTYDKMEALLSQNIHP------VDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAP---SEEIKDLI  165 (173)
Q Consensus        95 ~Aa~~G~~~~v~~LL~~Ga~~------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~---~~ei~~lL  165 (173)
                      +|+..|+.+++++|++.|+++      +.||||+|+..|+.+++++|+++|++++.+|..|.||||+|.   +.+++++|
T Consensus        86 ~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L  165 (169)
T 2y1l_E           86 LAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEIL  165 (169)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHHHHHHH
Confidence            478888888888888877766      337888888888888888888888888888888888888775   36677777


Q ss_pred             Hhh
Q 030701          166 LNF  168 (173)
Q Consensus       166 l~~  168 (173)
                      +++
T Consensus       166 ~~~  168 (169)
T 2y1l_E          166 QKL  168 (169)
T ss_dssp             HTC
T ss_pred             HHc
Confidence            664

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.48  E-value=1.6e-13  Score=103.94  Aligned_cols=76  Identities=21%  Similarity=0.240  Sum_probs=61.4

Q ss_pred             HHHHHcCCHHHHHHHHHCCCCC------CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhcC---chHHHHH
Q 030701           94 GMLAVEGTYDKMEALLSQNIHP------VDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAP---SEEIKDL  164 (173)
Q Consensus        94 ~~Aa~~G~~~~v~~LL~~Ga~~------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~---~~ei~~l  164 (173)
                      ++|+..|+.+++++|++.|+++      +.||||+|+..|+.+++++|++.|++++.+|..|.||||+|.   +.+++++
T Consensus       106 ~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~  185 (192)
T 2rfm_A          106 MWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKI  185 (192)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCcHHHHHH
Confidence            3488888888888888888776      448888888888888888888888888888888888888886   4678888


Q ss_pred             HHhhh
Q 030701          165 ILNFS  169 (173)
Q Consensus       165 Ll~~~  169 (173)
                      |+++.
T Consensus       186 Ll~~~  190 (192)
T 2rfm_A          186 FTEVR  190 (192)
T ss_dssp             HHHHH
T ss_pred             HHhcc
Confidence            87765

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.47  E-value=1.4e-13  Score=101.88  Aligned_cols=77  Identities=18%  Similarity=0.259  Sum_probs=65.7

Q ss_pred             HHHHHcCCHHHHHHHHHCCCCC------CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhcC---chHHHHH
Q 030701           94 GMLAVEGTYDKMEALLSQNIHP------VDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAP---SEEIKDL  164 (173)
Q Consensus        94 ~~Aa~~G~~~~v~~LL~~Ga~~------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~---~~ei~~l  164 (173)
                      |+|+..|+.+++++|++.|+++      +.||||+|+..|+.+++++|++.|++++.+|.+|.||||+|.   +.+++++
T Consensus        74 ~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~  153 (167)
T 3v31_A           74 SLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQV  153 (167)
T ss_dssp             HHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHH
Confidence            3499999999999999988877      448999999999999999999999999999999999999987   4688888


Q ss_pred             HHhhhh
Q 030701          165 ILNFSV  170 (173)
Q Consensus       165 Ll~~~~  170 (173)
                      |+++..
T Consensus       154 L~~~~~  159 (167)
T 3v31_A          154 IESHLL  159 (167)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            887654

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.47  E-value=2e-13  Score=101.62  Aligned_cols=77  Identities=30%  Similarity=0.348  Sum_probs=70.0

Q ss_pred             HHHHHcCCHHHHHHHHHCCCCC------CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhcC---chHHHHH
Q 030701           94 GMLAVEGTYDKMEALLSQNIHP------VDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAP---SEEIKDL  164 (173)
Q Consensus        94 ~~Aa~~G~~~~v~~LL~~Ga~~------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~---~~ei~~l  164 (173)
                      ++|+..|+.+++++|++.|+++      +.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+   +.+++++
T Consensus        52 ~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~  131 (169)
T 2y1l_E           52 HLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEV  131 (169)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHH
Confidence            3499999999999999999887      449999999999999999999999999999999999999997   4789999


Q ss_pred             HHhhhh
Q 030701          165 ILNFSV  170 (173)
Q Consensus       165 Ll~~~~  170 (173)
                      |+++..
T Consensus       132 Ll~~g~  137 (169)
T 2y1l_E          132 LLKNGA  137 (169)
T ss_dssp             HHHTTC
T ss_pred             HHHcCC
Confidence            987653

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.47  E-value=1.7e-13  Score=105.48  Aligned_cols=76  Identities=26%  Similarity=0.264  Sum_probs=58.0

Q ss_pred             HHHHHHcCCHHHHHHHHHCC-CCC------CCcHHHHHHHcCCHHHHHHHH-HcCCCcccccCCCCchhhhcCchHHHHH
Q 030701           93 MGMLAVEGTYDKMEALLSQN-IHP------VDILLMLAASEGDKPKIEELL-RAGASYTVKDADGRTALERAPSEEIKDL  164 (173)
Q Consensus        93 ~~~Aa~~G~~~~v~~LL~~G-a~~------~dTpLh~Aa~~g~~~~v~~LL-~~GAdi~~~d~~G~TpLh~A~~~ei~~l  164 (173)
                      +++|+..|+.+++++|++.| +++      +.||||+|+..|+.+++++|+ +.|+|++.+|.+|.||||+|.+.++.++
T Consensus       144 L~~A~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~~~~~~~~  223 (228)
T 2dzn_A          144 LHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQVKKF  223 (228)
T ss_dssp             HHHHHHTTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTSCBGGGGCSSTTHHHH
T ss_pred             HHHHHHcCCHHHHHHHHhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCcHHHHHHHHHHHHH
Confidence            33488888888888888777 554      448888888888888888888 7788888888888888888877777777


Q ss_pred             HHhh
Q 030701          165 ILNF  168 (173)
Q Consensus       165 Ll~~  168 (173)
                      |+++
T Consensus       224 l~~~  227 (228)
T 2dzn_A          224 FLNN  227 (228)
T ss_dssp             HHTT
T ss_pred             HHhc
Confidence            7765

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.47  E-value=1.6e-13  Score=106.94  Aligned_cols=78  Identities=18%  Similarity=0.204  Sum_probs=69.9

Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCC-------CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhcC---chHHH
Q 030701           93 MGMLAVEGTYDKMEALLSQNIHP-------VDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAP---SEEIK  162 (173)
Q Consensus        93 ~~~Aa~~G~~~~v~~LL~~Ga~~-------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~---~~ei~  162 (173)
                      +|+|+..|+.+++++|++.|+++       +.||||+|+..|+.+++++|+++|++++.+|..|.||||+|.   +.+++
T Consensus       121 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~  200 (236)
T 1ikn_D          121 LHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQ  200 (236)
T ss_dssp             HHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccCCCCCHHHHHHccCchHHH
Confidence            34599999999999999999887       349999999999999999999999999999999999999997   47899


Q ss_pred             HHHHhhhh
Q 030701          163 DLILNFSV  170 (173)
Q Consensus       163 ~lLl~~~~  170 (173)
                      ++|+++++
T Consensus       201 ~~Ll~~ga  208 (236)
T 1ikn_D          201 QQLGQLTL  208 (236)
T ss_dssp             HHHHTTSC
T ss_pred             HHHHHcch
Confidence            99988765

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.47  E-value=1.8e-13  Score=101.30  Aligned_cols=77  Identities=26%  Similarity=0.270  Sum_probs=70.2

Q ss_pred             HHHHHcCCHHHHHHHHHCCCCC------CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhcC---chHHHHH
Q 030701           94 GMLAVEGTYDKMEALLSQNIHP------VDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAP---SEEIKDL  164 (173)
Q Consensus        94 ~~Aa~~G~~~~v~~LL~~Ga~~------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~---~~ei~~l  164 (173)
                      ++|+..|+.+++++|++.|+++      +.||||+|+..|+.+++++|++.|++++..|..|.||||+|+   +.+++++
T Consensus        41 ~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~  120 (167)
T 3v31_A           41 MWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKM  120 (167)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHH
Confidence            3499999999999999999887      449999999999999999999999999999999999999997   4789999


Q ss_pred             HHhhhh
Q 030701          165 ILNFSV  170 (173)
Q Consensus       165 Ll~~~~  170 (173)
                      |+++..
T Consensus       121 Ll~~g~  126 (167)
T 3v31_A          121 LLESGA  126 (167)
T ss_dssp             HHHTTC
T ss_pred             HHHcCC
Confidence            987653

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.47  E-value=1.4e-13  Score=100.74  Aligned_cols=72  Identities=22%  Similarity=0.296  Sum_probs=66.1

Q ss_pred             HHHHHcCCHHHHHHHHHCCCCC------CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhcC---chHHHHH
Q 030701           94 GMLAVEGTYDKMEALLSQNIHP------VDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAP---SEEIKDL  164 (173)
Q Consensus        94 ~~Aa~~G~~~~v~~LL~~Ga~~------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~---~~ei~~l  164 (173)
                      ++|+..|+.+++++|++.|+++      +.||||+|+..|+.+++++|++.|++++.+|..|.||||+|.   +.+++++
T Consensus        72 ~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~  151 (153)
T 1awc_B           72 HMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEI  151 (153)
T ss_dssp             HHHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             HHHHHcChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHH
Confidence            3499999999999999999987      449999999999999999999999999999999999999997   3678877


Q ss_pred             H
Q 030701          165 I  165 (173)
Q Consensus       165 L  165 (173)
                      |
T Consensus       152 L  152 (153)
T 1awc_B          152 L  152 (153)
T ss_dssp             H
T ss_pred             h
Confidence            6

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.47  E-value=1.3e-13  Score=106.86  Aligned_cols=63  Identities=29%  Similarity=0.329  Sum_probs=30.8

Q ss_pred             HHHcCCHHHHHHHHHC-CCCC------CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhcCc
Q 030701           96 LAVEGTYDKMEALLSQ-NIHP------VDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAPS  158 (173)
Q Consensus        96 Aa~~G~~~~v~~LL~~-Ga~~------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~~  158 (173)
                      |+..|+.+++++|++. |+++      +.||||+|+..|+.+++++|+++|++++.+|.+|.||||+|..
T Consensus       113 A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~  182 (222)
T 3ehr_A          113 ACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATN  182 (222)
T ss_dssp             HHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCS
T ss_pred             HHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCHHHHhcc
Confidence            5555555555555544 4443      2245555555555555555555555555555555555555543

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.46  E-value=1.7e-13  Score=106.11  Aligned_cols=79  Identities=22%  Similarity=0.225  Sum_probs=71.6

Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCCC------CCcHHHHHHHcCCHHHHHHHHHc-CCCcccccCCCCchhhhcC---chHH
Q 030701           92 YMGMLAVEGTYDKMEALLSQNIHP------VDILLMLAASEGDKPKIEELLRA-GASYTVKDADGRTALERAP---SEEI  161 (173)
Q Consensus        92 ~~~~Aa~~G~~~~v~~LL~~Ga~~------~dTpLh~Aa~~g~~~~v~~LL~~-GAdi~~~d~~G~TpLh~A~---~~ei  161 (173)
                      ++++|+..|+.++++.|++.|+++      +.||||+|+..|+.+++++|++. |++++.+|..|.||||+|+   +.++
T Consensus        76 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~~~~~~~~  155 (222)
T 3ehr_A           76 PLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADI  155 (222)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHHHHTCHHH
T ss_pred             ccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHHHcCCHHH
Confidence            344599999999999999999887      44999999999999999999998 9999999999999999997   4789


Q ss_pred             HHHHHhhhh
Q 030701          162 KDLILNFSV  170 (173)
Q Consensus       162 ~~lLl~~~~  170 (173)
                      +++|+++.+
T Consensus       156 v~~Ll~~ga  164 (222)
T 3ehr_A          156 VQLLLAKGA  164 (222)
T ss_dssp             HHHHHHHTC
T ss_pred             HHHHHHcCC
Confidence            999988754

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.46  E-value=3.1e-13  Score=104.40  Aligned_cols=78  Identities=23%  Similarity=0.213  Sum_probs=63.4

Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCC------CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhcC---chHHHH
Q 030701           93 MGMLAVEGTYDKMEALLSQNIHP------VDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAP---SEEIKD  163 (173)
Q Consensus        93 ~~~Aa~~G~~~~v~~LL~~Ga~~------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~---~~ei~~  163 (173)
                      +++|+..|+.+++++|++.|+++      +.||||+|+..|+.+++++|+++|++++.+|.+|.||||+|.   +.++++
T Consensus       143 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~  222 (231)
T 3aji_A          143 MHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGGLGLILKR  222 (231)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHSCHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHhcCCCccccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhhHHHHHHH
Confidence            34588888888888888888776      448888888888888888888888888888888888888886   367888


Q ss_pred             HHHhhhh
Q 030701          164 LILNFSV  170 (173)
Q Consensus       164 lLl~~~~  170 (173)
                      +|+++..
T Consensus       223 lL~~~~a  229 (231)
T 3aji_A          223 LAEGEEA  229 (231)
T ss_dssp             HHHHHHH
T ss_pred             HHccccc
Confidence            8877654

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.45  E-value=2.4e-13  Score=99.32  Aligned_cols=74  Identities=23%  Similarity=0.301  Sum_probs=66.8

Q ss_pred             HHHHHcCCHHHHHHHHHCCCCC------CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhcC---chHHHHH
Q 030701           94 GMLAVEGTYDKMEALLSQNIHP------VDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAP---SEEIKDL  164 (173)
Q Consensus        94 ~~Aa~~G~~~~v~~LL~~Ga~~------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~---~~ei~~l  164 (173)
                      ++|+..|+.+++++|++.|+++      +.||||+|+..|+.+++++|++. ++++.+|.+|.||||+|.   +.+++++
T Consensus        73 ~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~l~~A~~~~~~~~v~~  151 (156)
T 1bd8_A           73 HDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQDLVDI  151 (156)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCTTSCCHHHHHHHSCCHHHHHH
T ss_pred             HHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCCCCCCHHHHHHHcCcHHHHHH
Confidence            3499999999999999999887      44999999999999999999988 999999999999999997   4789998


Q ss_pred             HHhh
Q 030701          165 ILNF  168 (173)
Q Consensus       165 Ll~~  168 (173)
                      |+++
T Consensus       152 Ll~~  155 (156)
T 1bd8_A          152 LQGH  155 (156)
T ss_dssp             HHTT
T ss_pred             HHhh
Confidence            8765

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.45  E-value=2.1e-13  Score=103.20  Aligned_cols=77  Identities=23%  Similarity=0.175  Sum_probs=70.2

Q ss_pred             HHHHHcCCHHHHHHHHHCCCCC------CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhcC---chHHHHH
Q 030701           94 GMLAVEGTYDKMEALLSQNIHP------VDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAP---SEEIKDL  164 (173)
Q Consensus        94 ~~Aa~~G~~~~v~~LL~~Ga~~------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~---~~ei~~l  164 (173)
                      ++|+..|+.+++++|++.|+++      +.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+   +.+++++
T Consensus        73 ~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~  152 (192)
T 2rfm_A           73 IWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKK  152 (192)
T ss_dssp             HHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHH
Confidence            3499999999999999999887      459999999999999999999999999999999999999997   4789999


Q ss_pred             HHhhhh
Q 030701          165 ILNFSV  170 (173)
Q Consensus       165 Ll~~~~  170 (173)
                      |+++..
T Consensus       153 Ll~~ga  158 (192)
T 2rfm_A          153 LLELGA  158 (192)
T ss_dssp             HHHTTC
T ss_pred             HHHCCC
Confidence            987653

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.45  E-value=1.9e-13  Score=112.18  Aligned_cols=79  Identities=18%  Similarity=0.172  Sum_probs=71.4

Q ss_pred             HHHHHHc---CCHHHHHHHHHCCCCC------CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhcC---chH
Q 030701           93 MGMLAVE---GTYDKMEALLSQNIHP------VDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAP---SEE  160 (173)
Q Consensus        93 ~~~Aa~~---G~~~~v~~LL~~Ga~~------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~---~~e  160 (173)
                      +|+|+..   |+.+++++|++.|+++      +.||||+|+..|+.+++++|++.|+|++.+|.+|.||||+|+   +.+
T Consensus       194 Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~  273 (301)
T 2b0o_E          194 LHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKE  273 (301)
T ss_dssp             HHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHH
T ss_pred             HHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHH
Confidence            4459987   8999999999999987      459999999999999999999999999999999999999997   478


Q ss_pred             HHHHHHhhhhc
Q 030701          161 IKDLILNFSVQ  171 (173)
Q Consensus       161 i~~lLl~~~~~  171 (173)
                      ++++|+++...
T Consensus       274 iv~~Ll~~ga~  284 (301)
T 2b0o_E          274 CEELLEQAQAG  284 (301)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHhcCC
Confidence            99999987653

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.45  E-value=2.2e-13  Score=103.00  Aligned_cols=72  Identities=24%  Similarity=0.300  Sum_probs=37.8

Q ss_pred             HHHcCCHHHHHHHHHCCCCC------CCcHHHHHHHcCCHHHHHHHHHcCCCccccc-CCCCchhhhcC---chHHHHHH
Q 030701           96 LAVEGTYDKMEALLSQNIHP------VDILLMLAASEGDKPKIEELLRAGASYTVKD-ADGRTALERAP---SEEIKDLI  165 (173)
Q Consensus        96 Aa~~G~~~~v~~LL~~Ga~~------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d-~~G~TpLh~A~---~~ei~~lL  165 (173)
                      |+..|+.++++.|++ |+++      +.||||+|+..|+.+++++|++.|++++.++ .+|.||||+|+   +.+++++|
T Consensus        51 A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~~~~~~~v~~L  129 (183)
T 3deo_A           51 AARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEAL  129 (183)
T ss_dssp             HHHTTCHHHHHHHTT-TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHcCCHHHHHHHHh-cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHhcCcHHHHHHH
Confidence            555555555555555 4443      2255555555555555555555555555554 45555555554   24455555


Q ss_pred             Hhh
Q 030701          166 LNF  168 (173)
Q Consensus       166 l~~  168 (173)
                      +++
T Consensus       130 l~~  132 (183)
T 3deo_A          130 VEL  132 (183)
T ss_dssp             HHH
T ss_pred             HHc
Confidence            443

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.45  E-value=2.4e-13  Score=109.55  Aligned_cols=78  Identities=27%  Similarity=0.292  Sum_probs=70.8

Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCCC------CCcHHHHHHHcCCHHHHHHHHH-cCCCcccccCCCCchhhhcC---chHH
Q 030701           92 YMGMLAVEGTYDKMEALLSQNIHP------VDILLMLAASEGDKPKIEELLR-AGASYTVKDADGRTALERAP---SEEI  161 (173)
Q Consensus        92 ~~~~Aa~~G~~~~v~~LL~~Ga~~------~dTpLh~Aa~~g~~~~v~~LL~-~GAdi~~~d~~G~TpLh~A~---~~ei  161 (173)
                      ++++|+..|+.+++++|++.|+++      +.||||+|+..|+.+++++|++ .|+|++.+|.+|.||||+|+   +.++
T Consensus       186 pLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~TpL~~A~~~g~~~i  265 (276)
T 4hbd_A          186 ALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEI  265 (276)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHHHTCHHH
T ss_pred             HHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCcCcCCCCCCHHHHHHHcCCHHH
Confidence            445699999999999999999988      4499999999999999999998 89999999999999999997   4789


Q ss_pred             HHHHHhhh
Q 030701          162 KDLILNFS  169 (173)
Q Consensus       162 ~~lLl~~~  169 (173)
                      +++|++..
T Consensus       266 v~~Ll~~~  273 (276)
T 4hbd_A          266 ASMLYSRM  273 (276)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHhcc
Confidence            99988754

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.45  E-value=2.9e-13  Score=94.64  Aligned_cols=78  Identities=31%  Similarity=0.387  Sum_probs=70.2

Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCC------CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhcC---chHHHH
Q 030701           93 MGMLAVEGTYDKMEALLSQNIHP------VDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAP---SEEIKD  163 (173)
Q Consensus        93 ~~~Aa~~G~~~~v~~LL~~Ga~~------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~---~~ei~~  163 (173)
                      ++.|+..|+.+++++|++.|+++      +.||||+|+..++.+++++|++.|++++.+|..|.||||+|+   +.++++
T Consensus         6 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~   85 (126)
T 1n0r_A            6 LHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVK   85 (126)
T ss_dssp             HHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             HHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcChHHHHH
Confidence            34599999999999999999877      449999999999999999999999999999999999999997   478999


Q ss_pred             HHHhhhh
Q 030701          164 LILNFSV  170 (173)
Q Consensus       164 lLl~~~~  170 (173)
                      +|+++..
T Consensus        86 ~Ll~~g~   92 (126)
T 1n0r_A           86 LLLEAGA   92 (126)
T ss_dssp             HHHHTTC
T ss_pred             HHHHcCC
Confidence            9887643

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.45  E-value=2.5e-13  Score=99.24  Aligned_cols=76  Identities=20%  Similarity=0.183  Sum_probs=68.8

Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCCC------CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhcC---chHHH
Q 030701           92 YMGMLAVEGTYDKMEALLSQNIHP------VDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAP---SEEIK  162 (173)
Q Consensus        92 ~~~~Aa~~G~~~~v~~LL~~Ga~~------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~---~~ei~  162 (173)
                      ++++ +..|+.+++++|++.|+++      +.||||+|+..|+.+++++|++.|++++.+|.+|.||||+|+   +.+++
T Consensus        39 ~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v  117 (156)
T 1bd8_A           39 ALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVV  117 (156)
T ss_dssp             HHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHH
T ss_pred             HHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHH
Confidence            3456 8899999999999999987      449999999999999999999999999999999999999997   47888


Q ss_pred             HHHHhh
Q 030701          163 DLILNF  168 (173)
Q Consensus       163 ~lLl~~  168 (173)
                      ++|+++
T Consensus       118 ~~Ll~~  123 (156)
T 1bd8_A          118 SFLAAE  123 (156)
T ss_dssp             HHHHTT
T ss_pred             HHHHhc
Confidence            888865

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.44  E-value=4e-13  Score=103.29  Aligned_cols=79  Identities=23%  Similarity=0.236  Sum_probs=59.1

Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCC------CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhcC---chHHHH
Q 030701           93 MGMLAVEGTYDKMEALLSQNIHP------VDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAP---SEEIKD  163 (173)
Q Consensus        93 ~~~Aa~~G~~~~v~~LL~~Ga~~------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~---~~ei~~  163 (173)
                      +++|+..|+.+++++|++.|+++      +.||||+|+..|+.+++++|+++|++++.+|..|.||||+|.   +.++++
T Consensus       129 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~  208 (223)
T 2f8y_A          129 LHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVR  208 (223)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCHHHHHHHhcchHHHH
Confidence            34477788888888888777776      347888888888888888888888888877778888888776   367777


Q ss_pred             HHHhhhhc
Q 030701          164 LILNFSVQ  171 (173)
Q Consensus       164 lLl~~~~~  171 (173)
                      +|+++...
T Consensus       209 ~L~~~g~~  216 (223)
T 2f8y_A          209 LLDEYNLV  216 (223)
T ss_dssp             HHHHTTCS
T ss_pred             HHHHcCCC
Confidence            77776653

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.44  E-value=5.4e-14  Score=103.62  Aligned_cols=74  Identities=27%  Similarity=0.274  Sum_probs=66.6

Q ss_pred             HHHcCCHHHHHHHHHCCCCC------CCc-HHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhcC---chHHHHHH
Q 030701           96 LAVEGTYDKMEALLSQNIHP------VDI-LLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAP---SEEIKDLI  165 (173)
Q Consensus        96 Aa~~G~~~~v~~LL~~Ga~~------~dT-pLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~---~~ei~~lL  165 (173)
                      | ..|+.+++++|++.|+++      +.| |||+|+..|+.+++++|+++|++++.+|..|.||||+|+   +.+++++|
T Consensus        52 A-~~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~L  130 (156)
T 1bi7_B           52 M-MMGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYL  130 (156)
T ss_dssp             S-CTTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHH
T ss_pred             H-HcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHH
Confidence            6 499999999999999987      447 999999999999999999999999999999999999997   47899999


Q ss_pred             Hhhhh
Q 030701          166 LNFSV  170 (173)
Q Consensus       166 l~~~~  170 (173)
                      +++..
T Consensus       131 l~~ga  135 (156)
T 1bi7_B          131 RAAAG  135 (156)
T ss_dssp             SSCC-
T ss_pred             HHcCC
Confidence            87654

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.44  E-value=3.7e-13  Score=104.30  Aligned_cols=71  Identities=23%  Similarity=0.302  Sum_probs=44.4

Q ss_pred             HHHHcCCHHHHHHHHHCCCCC------CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhcCchHHHHHH
Q 030701           95 MLAVEGTYDKMEALLSQNIHP------VDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAPSEEIKDLI  165 (173)
Q Consensus        95 ~Aa~~G~~~~v~~LL~~Ga~~------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~~~ei~~lL  165 (173)
                      +|+..|+.+++++|++.|+++      +.||||+|+..|+.+++++|++.|+|++.+|..|.||||+|......+++
T Consensus       156 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~i~  232 (241)
T 1k1a_A          156 HAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDIL  232 (241)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCcCCCCCCHHHHHHhcCcHHHH
Confidence            366666666666666666655      33666666666666666666666666666666666666666654333333

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.44  E-value=3.8e-13  Score=106.06  Aligned_cols=77  Identities=19%  Similarity=0.198  Sum_probs=68.9

Q ss_pred             HHHHHcCCHHHHHHHHHCCCCC--C------------------CcHHHHHHHcCCHHHHHHHHH---cCCCcccccCCCC
Q 030701           94 GMLAVEGTYDKMEALLSQNIHP--V------------------DILLMLAASEGDKPKIEELLR---AGASYTVKDADGR  150 (173)
Q Consensus        94 ~~Aa~~G~~~~v~~LL~~Ga~~--~------------------dTpLh~Aa~~g~~~~v~~LL~---~GAdi~~~d~~G~  150 (173)
                      |+|+..|+.++|++|++.|+++  .                  .||||+|+..|+.+++++|++   .|++++.+|.+|+
T Consensus        98 ~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~d~~g~  177 (260)
T 3jxi_A           98 HIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGN  177 (260)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSC
T ss_pred             HHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCCcccCCCCC
Confidence            3499999999999999999887  2                  299999999999999999999   9999999999999


Q ss_pred             chhhhcCc------------hHHHHHHHhhhh
Q 030701          151 TALERAPS------------EEIKDLILNFSV  170 (173)
Q Consensus       151 TpLh~A~~------------~ei~~lLl~~~~  170 (173)
                      ||||+|+.            .+++++|++++.
T Consensus       178 TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga  209 (260)
T 3jxi_A          178 TVLHALVAIADNTRENTKFVTKMYDLLLIKCA  209 (260)
T ss_dssp             CHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHhccCchhHHHHHHHHHHHHHHhCc
Confidence            99999982            378888887754

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.44  E-value=4.5e-13  Score=105.55  Aligned_cols=84  Identities=18%  Similarity=0.200  Sum_probs=74.0

Q ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHCCCCC------CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhc
Q 030701           83 RDDVEQYFNYMGMLAVEGTYDKMEALLSQNIHP------VDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERA  156 (173)
Q Consensus        83 ~~~~~~l~~~~~~Aa~~G~~~~v~~LL~~Ga~~------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A  156 (173)
                      .+..+.++.    |+..|+.+++++|++.|+++      +.||||+|+..|+.+++++|++.|++++.+|..|.||||+|
T Consensus        19 ~~~~t~L~~----A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpLh~A   94 (229)
T 2vge_A           19 LNPLVLLLD----AALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCA   94 (229)
T ss_dssp             SCHHHHHHH----HHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHH
T ss_pred             cchhHHHHH----HHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Confidence            344444555    99999999999999999887      44999999999999999999999999999999999999999


Q ss_pred             C---chHHHHHHHhhhh
Q 030701          157 P---SEEIKDLILNFSV  170 (173)
Q Consensus       157 ~---~~ei~~lLl~~~~  170 (173)
                      +   +.+++++|+++..
T Consensus        95 ~~~g~~~~v~~Ll~~ga  111 (229)
T 2vge_A           95 ASCNDTVICMALVQHGA  111 (229)
T ss_dssp             HHTTCHHHHHHHHTTTC
T ss_pred             HHcCCHHHHHHHHHcCC
Confidence            7   4789999987653

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.44  E-value=2.1e-13  Score=109.20  Aligned_cols=73  Identities=18%  Similarity=0.217  Sum_probs=43.7

Q ss_pred             HHHcCCHHHHHHHHHCCCCC------CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhcC---chHHHHHHH
Q 030701           96 LAVEGTYDKMEALLSQNIHP------VDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAP---SEEIKDLIL  166 (173)
Q Consensus        96 Aa~~G~~~~v~~LL~~Ga~~------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~---~~ei~~lLl  166 (173)
                      |+..|+.++|++|++.|+++      +.||||+|+..|+.+++++|++.|++++..|..|.||||+|+   +.+++++|+
T Consensus        47 A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll  126 (299)
T 1s70_B           47 ACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLI  126 (299)
T ss_dssp             HHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHH
Confidence            66666666666666666554      236666666666666666666666666666666666666664   245555555


Q ss_pred             hh
Q 030701          167 NF  168 (173)
Q Consensus       167 ~~  168 (173)
                      ++
T Consensus       127 ~~  128 (299)
T 1s70_B          127 SQ  128 (299)
T ss_dssp             HT
T ss_pred             hC
Confidence            44

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*

Probab=99.44  E-value=1.7e-13  Score=119.41  Aligned_cols=78  Identities=18%  Similarity=0.194  Sum_probs=70.6

Q ss_pred             HHHHHH---cCCHHHHHHHHHCCCCC------CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhcC---chH
Q 030701           93 MGMLAV---EGTYDKMEALLSQNIHP------VDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAP---SEE  160 (173)
Q Consensus        93 ~~~Aa~---~G~~~~v~~LL~~Ga~~------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~---~~e  160 (173)
                      +|+|+.   .|+.++|++||+.|+++      +.||||+|+..|+.+++++|+++|||++.+|.+|.||||+|+   +.+
T Consensus       175 Lh~A~~~a~~g~~~~v~~Ll~~ga~vn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~  254 (497)
T 3lvq_E          175 LHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKE  254 (497)
T ss_dssp             HHHHHHTCCTTTHHHHHHHHHHSCCTTCCCSSSCCHHHHHTTTTCHHHHHHHHHTCCCCSCCCTTCCCHHHHHHHTTCHH
T ss_pred             HHHHHHhcccccHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHH
Confidence            344855   99999999999999988      559999999999999999999999999999999999999997   478


Q ss_pred             HHHHHHhhhh
Q 030701          161 IKDLILNFSV  170 (173)
Q Consensus       161 i~~lLl~~~~  170 (173)
                      ++++|+++++
T Consensus       255 ~~~~Ll~~ga  264 (497)
T 3lvq_E          255 CEELLEQAQA  264 (497)
T ss_dssp             HHHHHHHTCC
T ss_pred             HHHHHHHhCC
Confidence            9999988764

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.44  E-value=2e-13  Score=100.13  Aligned_cols=75  Identities=19%  Similarity=0.288  Sum_probs=68.4

Q ss_pred             HHHHcCCHHHHHHHHHCCCCC------CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhcC---chHHHHHH
Q 030701           95 MLAVEGTYDKMEALLSQNIHP------VDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAP---SEEIKDLI  165 (173)
Q Consensus        95 ~Aa~~G~~~~v~~LL~~Ga~~------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~---~~ei~~lL  165 (173)
                      +|+. |+.+++++|++.|+++      +.||||+|+..|+.+++++|++.|++++.+|.+|.||||+|+   +.+++++|
T Consensus        44 ~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L  122 (162)
T 1ihb_A           44 VMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFL  122 (162)
T ss_dssp             HCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHH
Confidence            3777 9999999999999887      449999999999999999999999999999999999999997   47899999


Q ss_pred             Hhhhh
Q 030701          166 LNFSV  170 (173)
Q Consensus       166 l~~~~  170 (173)
                      +++..
T Consensus       123 l~~g~  127 (162)
T 1ihb_A          123 VKHTA  127 (162)
T ss_dssp             HHHSC
T ss_pred             HHccC
Confidence            87654

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.43  E-value=2.8e-13  Score=103.90  Aligned_cols=76  Identities=12%  Similarity=0.045  Sum_probs=61.6

Q ss_pred             HHHHHHHcCCH----HHHHHHHHCCCCC------CCcHHHHHHHcCC------HHHHHHHHHcCCCcccccCCCC-chhh
Q 030701           92 YMGMLAVEGTY----DKMEALLSQNIHP------VDILLMLAASEGD------KPKIEELLRAGASYTVKDADGR-TALE  154 (173)
Q Consensus        92 ~~~~Aa~~G~~----~~v~~LL~~Ga~~------~dTpLh~Aa~~g~------~~~v~~LL~~GAdi~~~d~~G~-TpLh  154 (173)
                      ++|+|+..|+.    +++++||+.|+++      +.||||+|+..++      .+++++|+++|||+|.+|.+|. ||||
T Consensus        41 ~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh  120 (186)
T 3t8k_A           41 ILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFK  120 (186)
T ss_dssp             HHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTG
T ss_pred             HHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHH
Confidence            34458888875    4899999999988      4499999998886      5788999999999999999999 9999


Q ss_pred             hcCc--------hHHHHHHHh
Q 030701          155 RAPS--------EEIKDLILN  167 (173)
Q Consensus       155 ~A~~--------~ei~~lLl~  167 (173)
                      +|..        .+++++|++
T Consensus       121 ~A~~~~~~~~~~~~iv~~Ll~  141 (186)
T 3t8k_A          121 NIFNYFVDENEMIPLYKLIFS  141 (186)
T ss_dssp             GGGGCCSCHHHHHHHHHHHHT
T ss_pred             HHHHcCCChhhHHHHHHHHHH
Confidence            9874        247777776

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.43  E-value=3.7e-13  Score=101.70  Aligned_cols=65  Identities=28%  Similarity=0.210  Sum_probs=60.5

Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCC-------CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhcC
Q 030701           93 MGMLAVEGTYDKMEALLSQNIHP-------VDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAP  157 (173)
Q Consensus        93 ~~~Aa~~G~~~~v~~LL~~Ga~~-------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~  157 (173)
                      +|+|+..|+.+++++|++.|+++       +.||||+|+..|+.+++++|+++|++++.+|.+|.||||+|.
T Consensus        80 L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~  151 (183)
T 3deo_A           80 LLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAR  151 (183)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHhcCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHH
Confidence            33499999999999999999987       339999999999999999999999999999999999999996

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.43  E-value=1.2e-13  Score=101.76  Aligned_cols=76  Identities=20%  Similarity=0.179  Sum_probs=68.6

Q ss_pred             HHHHHcCCHHHHHHHHHCCCCC------CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCc-hhhhcC---chHHHH
Q 030701           94 GMLAVEGTYDKMEALLSQNIHP------VDILLMLAASEGDKPKIEELLRAGASYTVKDADGRT-ALERAP---SEEIKD  163 (173)
Q Consensus        94 ~~Aa~~G~~~~v~~LL~~Ga~~------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~T-pLh~A~---~~ei~~  163 (173)
                      ++|+..|+.+++++|++.|+++      +.||||+|+ .|+.+++++|++.|++++.+|..|.| |||+|+   +.++++
T Consensus        17 ~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~~A~~~~~~~~v~   95 (156)
T 1bi7_B           17 ATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLV   95 (156)
T ss_dssp             HHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHHTCHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHHCCCHHHHH
Confidence            3499999999999999999887      459999985 99999999999999999999999999 999997   478999


Q ss_pred             HHHhhhh
Q 030701          164 LILNFSV  170 (173)
Q Consensus       164 lLl~~~~  170 (173)
                      +|+++..
T Consensus        96 ~Ll~~ga  102 (156)
T 1bi7_B           96 VLHRAGA  102 (156)
T ss_dssp             HHHHHTC
T ss_pred             HHHHcCC
Confidence            9988753

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.43  E-value=6.1e-13  Score=104.76  Aligned_cols=78  Identities=21%  Similarity=0.204  Sum_probs=69.3

Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCC-------------------CCcHHHHHHHcCCHHHHHHHHH---cCCCcccccCCCC
Q 030701           93 MGMLAVEGTYDKMEALLSQNIHP-------------------VDILLMLAASEGDKPKIEELLR---AGASYTVKDADGR  150 (173)
Q Consensus        93 ~~~Aa~~G~~~~v~~LL~~Ga~~-------------------~dTpLh~Aa~~g~~~~v~~LL~---~GAdi~~~d~~G~  150 (173)
                      +|+|+..|+.+++++|++.|+++                   +.||||+|+..|+.+++++|++   .|++++.+|.+|+
T Consensus        94 L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n~~d~~g~  173 (256)
T 2etb_A           94 LHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGN  173 (256)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSC
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCcCccCCCCC
Confidence            33499999999999999999987                   2399999999999999999999   9999999999999


Q ss_pred             chhhhcCc-----hH-------HHHHHHhhhh
Q 030701          151 TALERAPS-----EE-------IKDLILNFSV  170 (173)
Q Consensus       151 TpLh~A~~-----~e-------i~~lLl~~~~  170 (173)
                      ||||+|+.     .+       ++++|++++.
T Consensus       174 TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga  205 (256)
T 2etb_A          174 TVLHALVMIADNSPENSALVIHMYDGLLQMGA  205 (256)
T ss_dssp             CHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHcccCCchhhHHHHHHHHHHHHcCC
Confidence            99999862     44       8899887754

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.42  E-value=3.3e-13  Score=108.83  Aligned_cols=77  Identities=27%  Similarity=0.402  Sum_probs=68.7

Q ss_pred             HHHHHcCCHHHHHHHHHCCCCC------CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhcC---chHHHHH
Q 030701           94 GMLAVEGTYDKMEALLSQNIHP------VDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAP---SEEIKDL  164 (173)
Q Consensus        94 ~~Aa~~G~~~~v~~LL~~Ga~~------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~---~~ei~~l  164 (173)
                      ++|+..++.++++.|++.|+++      +.||||+|+..|+.+++++|++.|+|++.++..|.||||+|+   +.+++++
T Consensus       124 ~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~  203 (269)
T 4b93_B          124 HLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVEL  203 (269)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHH
T ss_pred             ccccccChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHH
Confidence            3488999999999999999887      449999999999999999999999999999999999999997   4789999


Q ss_pred             HHhhhh
Q 030701          165 ILNFSV  170 (173)
Q Consensus       165 Ll~~~~  170 (173)
                      |+++++
T Consensus       204 Ll~~Ga  209 (269)
T 4b93_B          204 LLLHGA  209 (269)
T ss_dssp             HHHTTC
T ss_pred             HHHCCC
Confidence            988754

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.42  E-value=3.2e-13  Score=106.98  Aligned_cols=62  Identities=29%  Similarity=0.220  Sum_probs=34.7

Q ss_pred             HHHcCCHHHHHHHHHCCCCC-------CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhcC
Q 030701           96 LAVEGTYDKMEALLSQNIHP-------VDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAP  157 (173)
Q Consensus        96 Aa~~G~~~~v~~LL~~Ga~~-------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~  157 (173)
                      |+..|+.++|++|++.|+++       +.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+
T Consensus        84 A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~  152 (244)
T 3ui2_A           84 VAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAR  152 (244)
T ss_dssp             HHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred             HHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHH
Confidence            55555555555555555554       225555555555555555555555555555555555555553

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.41  E-value=5.1e-13  Score=105.09  Aligned_cols=76  Identities=20%  Similarity=0.289  Sum_probs=70.2

Q ss_pred             HHHHcCCHHHHHHHHHCCCCC------CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhcC---chHHHHHH
Q 030701           95 MLAVEGTYDKMEALLSQNIHP------VDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAP---SEEIKDLI  165 (173)
Q Consensus        95 ~Aa~~G~~~~v~~LL~~Ga~~------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~---~~ei~~lL  165 (173)
                      .|+..|+.++++.|++.|+++      +.||||+|+..|+.+++++|+++|++++.+|.+|.||||+|+   +.+++++|
T Consensus        43 ~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~L  122 (239)
T 1ycs_B           43 DSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFL  122 (239)
T ss_dssp             HHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHH
Confidence            499999999999999999887      449999999999999999999999999999999999999997   47899999


Q ss_pred             Hhhhh
Q 030701          166 LNFSV  170 (173)
Q Consensus       166 l~~~~  170 (173)
                      +++..
T Consensus       123 l~~ga  127 (239)
T 1ycs_B          123 VESGA  127 (239)
T ss_dssp             HHTTC
T ss_pred             HHcCC
Confidence            88754

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.41  E-value=5.5e-13  Score=112.93  Aligned_cols=78  Identities=21%  Similarity=0.156  Sum_probs=67.8

Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCC------CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhcC---chHHHH
Q 030701           93 MGMLAVEGTYDKMEALLSQNIHP------VDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAP---SEEIKD  163 (173)
Q Consensus        93 ~~~Aa~~G~~~~v~~LL~~Ga~~------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~---~~ei~~  163 (173)
                      +|+|+..|+.++|++|++.|+++      +.||||+|+..|+.+++++|+++|++++.+|.+|.||||+|.   +.++++
T Consensus       239 Lh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~  318 (368)
T 3jue_A          239 LIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVT  318 (368)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHH
Confidence            33499999999999999999887      449999999999999999999999999999999999999986   478888


Q ss_pred             HHHhhhh
Q 030701          164 LILNFSV  170 (173)
Q Consensus       164 lLl~~~~  170 (173)
                      +|+.+..
T Consensus       319 lLl~~~~  325 (368)
T 3jue_A          319 LLRLAKM  325 (368)
T ss_dssp             HHHHHHC
T ss_pred             HHHHcCC
Confidence            8887653

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.41  E-value=6.4e-13  Score=105.23  Aligned_cols=78  Identities=22%  Similarity=0.242  Sum_probs=69.7

Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCCC------CCcHHHHHHHcCCHHHHHHHHHcCCCccccc-CCCCchhhhcC---chHH
Q 030701           92 YMGMLAVEGTYDKMEALLSQNIHP------VDILLMLAASEGDKPKIEELLRAGASYTVKD-ADGRTALERAP---SEEI  161 (173)
Q Consensus        92 ~~~~Aa~~G~~~~v~~LL~~Ga~~------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d-~~G~TpLh~A~---~~ei  161 (173)
                      +++.|+..|+.++++.|++ |+++      +.||||+|+..|+.+++++|++.|++++.++ ..|.||||+|+   +.++
T Consensus        48 ~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~g~~~~  126 (244)
T 3ui2_A           48 PWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEV  126 (244)
T ss_dssp             HHHHHHTTTCHHHHHHTTT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHTTCHHH
T ss_pred             HHHHHHHcCCHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHH
Confidence            3445999999999999999 8877      4599999999999999999999999999998 78999999997   4789


Q ss_pred             HHHHHhhhh
Q 030701          162 KDLILNFSV  170 (173)
Q Consensus       162 ~~lLl~~~~  170 (173)
                      +++|+++..
T Consensus       127 v~~Ll~~ga  135 (244)
T 3ui2_A          127 VEALVELGA  135 (244)
T ss_dssp             HHHHHHTTC
T ss_pred             HHHHHHCCC
Confidence            999988753

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.41  E-value=7.4e-13  Score=105.37  Aligned_cols=77  Identities=18%  Similarity=0.167  Sum_probs=68.9

Q ss_pred             HHHHHcCCHHHHHHHHHCCCCC----C--------------C--cHHHHHHHcCCHHHHHHHHH---cCCCcccccCCCC
Q 030701           94 GMLAVEGTYDKMEALLSQNIHP----V--------------D--ILLMLAASEGDKPKIEELLR---AGASYTVKDADGR  150 (173)
Q Consensus        94 ~~Aa~~G~~~~v~~LL~~Ga~~----~--------------d--TpLh~Aa~~g~~~~v~~LL~---~GAdi~~~d~~G~  150 (173)
                      ++|+..|+.+++++|++.|+++    .              +  ||||+|+..|+.+++++|++   .|++++.+|.+|+
T Consensus       106 ~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~  185 (273)
T 2pnn_A          106 HIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGN  185 (273)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSC
T ss_pred             HHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCceeeCCCCC
Confidence            3499999999999999999987    2              2  99999999999999999999   9999999999999


Q ss_pred             chhhhcCc------------hHHHHHHHhhhh
Q 030701          151 TALERAPS------------EEIKDLILNFSV  170 (173)
Q Consensus       151 TpLh~A~~------------~ei~~lLl~~~~  170 (173)
                      ||||+|+.            .+++++|+++..
T Consensus       186 tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga  217 (273)
T 2pnn_A          186 TVLHALVEVADNTVDNTKFVTSMYNEILILGA  217 (273)
T ss_dssp             CHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHccCcchhHHHHHHHHHHHHHHhhh
Confidence            99999973            578888887653

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.40  E-value=5.7e-13  Score=100.86  Aligned_cols=75  Identities=25%  Similarity=0.330  Sum_probs=57.7

Q ss_pred             HHHHHcCCHHHHHHHHHCC-CCC------CCcHHHHHHHcCC-----HHHHHHHHHcCCCcccccCCCCchhhhcC---c
Q 030701           94 GMLAVEGTYDKMEALLSQN-IHP------VDILLMLAASEGD-----KPKIEELLRAGASYTVKDADGRTALERAP---S  158 (173)
Q Consensus        94 ~~Aa~~G~~~~v~~LL~~G-a~~------~dTpLh~Aa~~g~-----~~~v~~LL~~GAdi~~~d~~G~TpLh~A~---~  158 (173)
                      ++|+..|+.+++++|++.| +++      +.||||+|+..+.     .+++++|++.|++++.+|..|.||||+|.   +
T Consensus       111 ~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~  190 (201)
T 3hra_A          111 IPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGY  190 (201)
T ss_dssp             HHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCC
Confidence            3488888888888888877 554      4488888887776     78888888888888888888888888886   3


Q ss_pred             hHHHHHHHhh
Q 030701          159 EEIKDLILNF  168 (173)
Q Consensus       159 ~ei~~lLl~~  168 (173)
                      .+++++|+++
T Consensus       191 ~~~~~~Ll~~  200 (201)
T 3hra_A          191 TEISKILAQY  200 (201)
T ss_dssp             HHHHHHHHTC
T ss_pred             HhHHHHHHhc
Confidence            6777777765

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.40  E-value=1e-12  Score=106.65  Aligned_cols=78  Identities=24%  Similarity=0.174  Sum_probs=70.3

Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCC------CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhcC---chHHHH
Q 030701           93 MGMLAVEGTYDKMEALLSQNIHP------VDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAP---SEEIKD  163 (173)
Q Consensus        93 ~~~Aa~~G~~~~v~~LL~~Ga~~------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~---~~ei~~  163 (173)
                      +|+|+..|+.+++++|++.|+++      +.||||+|+..|+.+++++|++.|++++..|..|.||||+|+   +.++++
T Consensus        62 L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~  141 (351)
T 3utm_A           62 LHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCS  141 (351)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHH
Confidence            33499999999999999999987      449999999999999999999999999999999999999997   478999


Q ss_pred             HHHhhhh
Q 030701          164 LILNFSV  170 (173)
Q Consensus       164 lLl~~~~  170 (173)
                      +|+++..
T Consensus       142 ~Ll~~g~  148 (351)
T 3utm_A          142 LLLSHGA  148 (351)
T ss_dssp             HHHHTTC
T ss_pred             HHHHcCC
Confidence            9887653

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.40  E-value=1.1e-12  Score=100.83  Aligned_cols=78  Identities=21%  Similarity=0.168  Sum_probs=68.8

Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCC------CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhcC---chHHHH
Q 030701           93 MGMLAVEGTYDKMEALLSQNIHP------VDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAP---SEEIKD  163 (173)
Q Consensus        93 ~~~Aa~~G~~~~v~~LL~~Ga~~------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~---~~ei~~  163 (173)
                      +++|+..|+.+++++|++.|+++      +.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+   +.++++
T Consensus        96 L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~  175 (223)
T 2f8y_A           96 LILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAK  175 (223)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHH
T ss_pred             HHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcCHHHHHHHcCCHHHHH
Confidence            33499999999999999999887      449999999999999999999999999999999999999997   478888


Q ss_pred             HHHhhhh
Q 030701          164 LILNFSV  170 (173)
Q Consensus       164 lLl~~~~  170 (173)
                      +|+++..
T Consensus       176 ~Ll~~ga  182 (223)
T 2f8y_A          176 VLLDHFA  182 (223)
T ss_dssp             HHHHTTC
T ss_pred             HHHHcCC
Confidence            8887754

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.40  E-value=1.1e-12  Score=101.56  Aligned_cols=78  Identities=21%  Similarity=0.295  Sum_probs=68.2

Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCC-------------------CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchh
Q 030701           93 MGMLAVEGTYDKMEALLSQNIHP-------------------VDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTAL  153 (173)
Q Consensus        93 ~~~Aa~~G~~~~v~~LL~~Ga~~-------------------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpL  153 (173)
                      +++|+..|+.+++++|++.|+++                   +.||||+|+..|+.+++++|++.|+|++.+|.+|.|||
T Consensus        79 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~L  158 (232)
T 2rfa_A           79 LHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVL  158 (232)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred             HHHHHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHH
Confidence            33499999999999999999886                   23999999999999999999999999999999999999


Q ss_pred             hhcCc---hHHH----HHHHhhhh
Q 030701          154 ERAPS---EEIK----DLILNFSV  170 (173)
Q Consensus       154 h~A~~---~ei~----~lLl~~~~  170 (173)
                      |+|+.   .+++    ++|+++..
T Consensus       159 ~~A~~~~~~~~~~~i~~~Ll~~g~  182 (232)
T 2rfa_A          159 HILILQPNKTFACQMYNLLLSYDG  182 (232)
T ss_dssp             HHHHTCSCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHcCChHHHHHHHHHHHhcCC
Confidence            99973   4554    88877654

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.40  E-value=1.4e-12  Score=105.30  Aligned_cols=77  Identities=18%  Similarity=0.201  Sum_probs=63.1

Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCCC-----CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhcC-chHHHHHH
Q 030701           92 YMGMLAVEGTYDKMEALLSQNIHP-----VDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAP-SEEIKDLI  165 (173)
Q Consensus        92 ~~~~Aa~~G~~~~v~~LL~~Ga~~-----~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~-~~ei~~lL  165 (173)
                      ++++|+..|+.+++++|++.|+++     +.||||+|+..|+.+++++|++.|+|++.+|.+|+||||+|. +.+++++|
T Consensus       193 ~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~~~L  272 (285)
T 3d9h_A          193 PLYLACENQQRACVKKLLESGADVNQGKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVPPESPLAQLF  272 (285)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTCCBTTBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGSCTTSHHHHHH
T ss_pred             HHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHhcCccHHHHHH
Confidence            345588888888888888888876     448888888888888888888888888888888888888887 46778887


Q ss_pred             Hhh
Q 030701          166 LNF  168 (173)
Q Consensus       166 l~~  168 (173)
                      +++
T Consensus       273 l~~  275 (285)
T 3d9h_A          273 LER  275 (285)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            766

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.40  E-value=5.2e-13  Score=105.46  Aligned_cols=73  Identities=22%  Similarity=0.187  Sum_probs=39.5

Q ss_pred             HHHcCCHHHHHHHHHCCCCC------CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhcC---chHHHHHHH
Q 030701           96 LAVEGTYDKMEALLSQNIHP------VDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAP---SEEIKDLIL  166 (173)
Q Consensus        96 Aa~~G~~~~v~~LL~~Ga~~------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~---~~ei~~lLl  166 (173)
                      |+..|+.+++++|++.|+++      +.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+   +.+++++|+
T Consensus       131 A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll  210 (253)
T 1yyh_A          131 AARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLL  210 (253)
T ss_dssp             HHHHTCSSHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred             HHHcChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHH
Confidence            55555555555555555544      235555555555555555555555555555555555555554   245555555


Q ss_pred             hh
Q 030701          167 NF  168 (173)
Q Consensus       167 ~~  168 (173)
                      ++
T Consensus       211 ~~  212 (253)
T 1yyh_A          211 DH  212 (253)
T ss_dssp             HT
T ss_pred             Hc
Confidence            44

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.40  E-value=8.1e-13  Score=104.34  Aligned_cols=78  Identities=23%  Similarity=0.169  Sum_probs=69.6

Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCCC------CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhcC---chHHH
Q 030701           92 YMGMLAVEGTYDKMEALLSQNIHP------VDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAP---SEEIK  162 (173)
Q Consensus        92 ~~~~Aa~~G~~~~v~~LL~~Ga~~------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~---~~ei~  162 (173)
                      ++++|+..|+.+++++|++.|+++      +.||||+|+..|+.+++++|+++|++++.+|..|.||||+|.   +.+|+
T Consensus       160 ~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~  239 (253)
T 1yyh_A          160 ALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIV  239 (253)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccCCCCHHHHHHHcCCHHHH
Confidence            345699999999999999999987      459999999999999999999999999999999999999997   47888


Q ss_pred             HHHHhhh
Q 030701          163 DLILNFS  169 (173)
Q Consensus       163 ~lLl~~~  169 (173)
                      ++|..+.
T Consensus       240 ~~l~~~~  246 (253)
T 1yyh_A          240 RLLDLEH  246 (253)
T ss_dssp             HHHHC--
T ss_pred             HHHHHHh
Confidence            8887643

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.39  E-value=1.1e-12  Score=100.92  Aligned_cols=76  Identities=22%  Similarity=0.220  Sum_probs=63.4

Q ss_pred             HHHHHcCCHHHHHHHHHCCCCC------CCcHHHHHHHcCCHHHHHHHHHcC-CCcccccCCCCchhhhcC---chHHHH
Q 030701           94 GMLAVEGTYDKMEALLSQNIHP------VDILLMLAASEGDKPKIEELLRAG-ASYTVKDADGRTALERAP---SEEIKD  163 (173)
Q Consensus        94 ~~Aa~~G~~~~v~~LL~~Ga~~------~dTpLh~Aa~~g~~~~v~~LL~~G-Adi~~~d~~G~TpLh~A~---~~ei~~  163 (173)
                      ++|+..|+.+++++|++.|+++      +.||||+|+..|+.+++++|++.| ++++.+|..|.||||+|+   +.++++
T Consensus       112 ~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~  191 (228)
T 2dzn_A          112 HLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAV  191 (228)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             HHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhcCcccccCcCCCCCCHHHHHHHcCCHHHHH
Confidence            3488889999999999888877      448999999999999999999888 889988999999999886   467888


Q ss_pred             HHH-hhh
Q 030701          164 LIL-NFS  169 (173)
Q Consensus       164 lLl-~~~  169 (173)
                      +|+ ++.
T Consensus       192 ~Ll~~~g  198 (228)
T 2dzn_A          192 LLVEKYG  198 (228)
T ss_dssp             HHHHHHC
T ss_pred             HHHHhcC
Confidence            877 544

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.39  E-value=4.9e-13  Score=110.57  Aligned_cols=77  Identities=8%  Similarity=-0.019  Sum_probs=67.2

Q ss_pred             HHHHHHcCCHHHHHHHHHCCCC-----C------CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhcC---c
Q 030701           93 MGMLAVEGTYDKMEALLSQNIH-----P------VDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAP---S  158 (173)
Q Consensus        93 ~~~Aa~~G~~~~v~~LL~~Ga~-----~------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~---~  158 (173)
                      +++|+..|+.+++++|++.|++     +      +.||||+|+..|+.+++++|+++|+|++.+|.+|.||||+|+   +
T Consensus       177 L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~g~  256 (364)
T 3ljn_A          177 LMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAM  256 (364)
T ss_dssp             HHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTCC
T ss_pred             HHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhCh
Confidence            3449999999999999998877     4      449999999999999999999999999999999999999997   4


Q ss_pred             hHHHHHHHhhh
Q 030701          159 EEIKDLILNFS  169 (173)
Q Consensus       159 ~ei~~lLl~~~  169 (173)
                      .+++++|+++.
T Consensus       257 ~~~v~~Ll~~~  267 (364)
T 3ljn_A          257 VLLTKELLQKT  267 (364)
T ss_dssp             HHHHHHHHHHS
T ss_pred             HHHHHHHHHcC
Confidence            78888888764

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.39  E-value=4.8e-13  Score=108.10  Aligned_cols=73  Identities=15%  Similarity=0.158  Sum_probs=35.8

Q ss_pred             HHHcCCHHHHHHHHHCCCCC------CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCC-CchhhhcC---chHHHHHH
Q 030701           96 LAVEGTYDKMEALLSQNIHP------VDILLMLAASEGDKPKIEELLRAGASYTVKDADG-RTALERAP---SEEIKDLI  165 (173)
Q Consensus        96 Aa~~G~~~~v~~LL~~Ga~~------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G-~TpLh~A~---~~ei~~lL  165 (173)
                      |+..|+.+++++|++.|+++      +.||||+|+..|+.+++++|++.|++++.++..| .||||+|+   +.+++++|
T Consensus        69 A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~L  148 (285)
T 3kea_A           69 AATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYF  148 (285)
T ss_dssp             HTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHH
Confidence            55555555555555555444      2255555555555555555555555555555544 45555543   23444444


Q ss_pred             Hhh
Q 030701          166 LNF  168 (173)
Q Consensus       166 l~~  168 (173)
                      +++
T Consensus       149 l~~  151 (285)
T 3kea_A          149 LSE  151 (285)
T ss_dssp             HTT
T ss_pred             HhC
Confidence            443

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.39  E-value=1.4e-12  Score=100.97  Aligned_cols=78  Identities=15%  Similarity=0.164  Sum_probs=70.0

Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCC-------CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhcC---chHHH
Q 030701           93 MGMLAVEGTYDKMEALLSQNIHP-------VDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAP---SEEIK  162 (173)
Q Consensus        93 ~~~Aa~~G~~~~v~~LL~~Ga~~-------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~---~~ei~  162 (173)
                      +++|+..|+.+++++|++.|+++       +.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+   +.+++
T Consensus       120 L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v  199 (241)
T 1k1a_A          120 LHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLV  199 (241)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHH
Confidence            34599999999999999999887       349999999999999999999999999999999999999997   47899


Q ss_pred             HHHHhhhh
Q 030701          163 DLILNFSV  170 (173)
Q Consensus       163 ~lLl~~~~  170 (173)
                      ++|+++..
T Consensus       200 ~~Ll~~ga  207 (241)
T 1k1a_A          200 RTLVRSGA  207 (241)
T ss_dssp             HHHHHTTC
T ss_pred             HHHHhcCC
Confidence            99988754

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.39  E-value=1.3e-12  Score=101.12  Aligned_cols=79  Identities=14%  Similarity=0.135  Sum_probs=70.5

Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCC------CCcHHHHHHHcCCHHHH----HHHHHcCCCc------ccccCCCCchhhhc
Q 030701           93 MGMLAVEGTYDKMEALLSQNIHP------VDILLMLAASEGDKPKI----EELLRAGASY------TVKDADGRTALERA  156 (173)
Q Consensus        93 ~~~Aa~~G~~~~v~~LL~~Ga~~------~dTpLh~Aa~~g~~~~v----~~LL~~GAdi------~~~d~~G~TpLh~A  156 (173)
                      +++|+..|+.+++++|++.|+++      +.||||+|+..|+.+++    ++|++.|+++      +.+|..|.||||+|
T Consensus       125 L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A  204 (232)
T 2rfa_A          125 LSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLA  204 (232)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHH
Confidence            33499999999999999999987      45999999999999988    9999999998      58999999999999


Q ss_pred             C---chHHHHHHHhhhhc
Q 030701          157 P---SEEIKDLILNFSVQ  171 (173)
Q Consensus       157 ~---~~ei~~lLl~~~~~  171 (173)
                      +   +.+++++|+++...
T Consensus       205 ~~~g~~~~v~~Ll~~g~~  222 (232)
T 2rfa_A          205 GVEGNIVMFQHLMQKRKH  222 (232)
T ss_dssp             HHHTCHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHhcCcc
Confidence            7   47899999887653

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.39  E-value=5.2e-13  Score=105.54  Aligned_cols=76  Identities=25%  Similarity=0.242  Sum_probs=68.2

Q ss_pred             HHHHHcCCHHHHHHHHHCCCC---C------CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhcC---chHH
Q 030701           94 GMLAVEGTYDKMEALLSQNIH---P------VDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAP---SEEI  161 (173)
Q Consensus        94 ~~Aa~~G~~~~v~~LL~~Ga~---~------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~---~~ei  161 (173)
                      |+|+..|+.++|++|++.|++   +      +.||||+|+..|+.+++++|+++|++++.++..|.||||+|+   +.++
T Consensus        14 ~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~   93 (282)
T 1oy3_D           14 HLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTC   93 (282)
T ss_dssp             HHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHHHHTTTTCHHH
T ss_pred             HHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcch
Confidence            349999999999999998876   2      459999999999999999999999999999999999999997   3788


Q ss_pred             HHHHHhhh
Q 030701          162 KDLILNFS  169 (173)
Q Consensus       162 ~~lLl~~~  169 (173)
                      +++|+++.
T Consensus        94 v~~Ll~~~  101 (282)
T 1oy3_D           94 ACVLLQPR  101 (282)
T ss_dssp             HHHHSSSC
T ss_pred             hHhhhccC
Confidence            88887654

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.38  E-value=6e-13  Score=111.37  Aligned_cols=80  Identities=24%  Similarity=0.243  Sum_probs=70.4

Q ss_pred             HHHHHHcCCHHHHHHHHHCC-CCC------CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhcC---chHHH
Q 030701           93 MGMLAVEGTYDKMEALLSQN-IHP------VDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAP---SEEIK  162 (173)
Q Consensus        93 ~~~Aa~~G~~~~v~~LL~~G-a~~------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~---~~ei~  162 (173)
                      +|+|+..|+.++|++|++.+ +++      +.||||+|+..|+.+++++|+++|++++.+|..|.||||+|.   +.+++
T Consensus       283 Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~l~~A~~~g~~~iv  362 (373)
T 2fo1_E          283 LHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIV  362 (373)
T ss_dssp             HHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccCCCCCCCCHHHHHHHcCCHHHH
Confidence            44599999999999999876 666      459999999999999999999999999999999999999997   47999


Q ss_pred             HHHHhhhhcc
Q 030701          163 DLILNFSVQK  172 (173)
Q Consensus       163 ~lLl~~~~~~  172 (173)
                      ++|+++..++
T Consensus       363 ~~Ll~~~a~~  372 (373)
T 2fo1_E          363 DIFDRCRPER  372 (373)
T ss_dssp             HHHHTTC---
T ss_pred             HHHHhcCccc
Confidence            9999887654

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.38  E-value=6.4e-13  Score=104.67  Aligned_cols=78  Identities=23%  Similarity=0.265  Sum_probs=70.2

Q ss_pred             HHHHHHcCCHHHHHHHHH---CCCCC------CCcHHHHHHH--cCCHH-------HHHHHHHcCCCc-------ccccC
Q 030701           93 MGMLAVEGTYDKMEALLS---QNIHP------VDILLMLAAS--EGDKP-------KIEELLRAGASY-------TVKDA  147 (173)
Q Consensus        93 ~~~Aa~~G~~~~v~~LL~---~Ga~~------~dTpLh~Aa~--~g~~~-------~v~~LL~~GAdi-------~~~d~  147 (173)
                      +|+|+..|+.+++++|++   .|+++      +.||||+|+.  .++.+       ++++|++.|+++       +.+|.
T Consensus       140 L~~A~~~~~~~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~  219 (256)
T 2etb_A          140 LSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNH  219 (256)
T ss_dssp             HHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCT
T ss_pred             HHHHHHcCCHHHHHHHHhccccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCC
Confidence            334999999999999999   89887      4599999999  88888       999999999999       99999


Q ss_pred             CCCchhhhcC---chHHHHHHHhhhh
Q 030701          148 DGRTALERAP---SEEIKDLILNFSV  170 (173)
Q Consensus       148 ~G~TpLh~A~---~~ei~~lLl~~~~  170 (173)
                      .|.||||+|+   +.+++++|+++..
T Consensus       220 ~g~tpL~~A~~~g~~~~v~~Ll~~g~  245 (256)
T 2etb_A          220 QGLTPLKLAAKEGKIEIFRHILQREF  245 (256)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHhCCC
Confidence            9999999997   4789999988764

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.38  E-value=1.7e-12  Score=104.78  Aligned_cols=75  Identities=27%  Similarity=0.182  Sum_probs=64.5

Q ss_pred             HHHHcCCHHHHHHHHHCCCCC------CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhcC---chHHHHHH
Q 030701           95 MLAVEGTYDKMEALLSQNIHP------VDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAP---SEEIKDLI  165 (173)
Q Consensus        95 ~Aa~~G~~~~v~~LL~~Ga~~------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~---~~ei~~lL  165 (173)
                      +|+..|+.+++++|++.|+++      +.||||+|+..|+.+++++|++.|++++.+|.+|.||||+|+   +.+++++|
T Consensus        65 ~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~L  144 (285)
T 3d9h_A           65 EAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLL  144 (285)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCSCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCHHHHHHHH
Confidence            399999999999999998877      449999999999999999999999999999999999999887   46788888


Q ss_pred             Hhhh
Q 030701          166 LNFS  169 (173)
Q Consensus       166 l~~~  169 (173)
                      +++.
T Consensus       145 l~~g  148 (285)
T 3d9h_A          145 LQHG  148 (285)
T ss_dssp             HHTT
T ss_pred             HHCC
Confidence            7764

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.38  E-value=1.8e-12  Score=105.16  Aligned_cols=76  Identities=21%  Similarity=0.213  Sum_probs=59.6

Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCC------CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhcCchHHHHHHH
Q 030701           93 MGMLAVEGTYDKMEALLSQNIHP------VDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAPSEEIKDLIL  166 (173)
Q Consensus        93 ~~~Aa~~G~~~~v~~LL~~Ga~~------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~~~ei~~lLl  166 (173)
                      +|+|+..|+.+++++|++.|+++      +.||||+|+..|+.+++++|+++|+|++.+|.+|.||+++| .+++.++|.
T Consensus       251 L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~~~~g~tal~~a-~~~~~~~l~  329 (351)
T 3utm_A          251 LHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMG-NEAVQQILS  329 (351)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHS-CHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCChhhhh-hHHHHHHHH
Confidence            44588888888888888888777      34888888888888888888888888888888888888887 566777766


Q ss_pred             hhh
Q 030701          167 NFS  169 (173)
Q Consensus       167 ~~~  169 (173)
                      +..
T Consensus       330 ~~~  332 (351)
T 3utm_A          330 EST  332 (351)
T ss_dssp             HC-
T ss_pred             hcc
Confidence            543

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.38  E-value=1.1e-12  Score=104.97  Aligned_cols=67  Identities=18%  Similarity=0.134  Sum_probs=62.7

Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCCC------CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhcCc
Q 030701           92 YMGMLAVEGTYDKMEALLSQNIHP------VDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAPS  158 (173)
Q Consensus        92 ~~~~Aa~~G~~~~v~~LL~~Ga~~------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~~  158 (173)
                      ++|+|+..|+.+++++|++.|+++      +.||||+|+..|+.+++++|+++|+|++.+|..|.||||+|..
T Consensus       202 ~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~  274 (299)
T 1s70_B          202 ALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADE  274 (299)
T ss_dssp             HHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCCS
T ss_pred             HHHHHHHCCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHH
Confidence            456699999999999999999987      4599999999999999999999999999999999999999974

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.38  E-value=1.9e-12  Score=99.98  Aligned_cols=78  Identities=22%  Similarity=0.227  Sum_probs=65.9

Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCC------CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhcC---chHHHH
Q 030701           93 MGMLAVEGTYDKMEALLSQNIHP------VDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAP---SEEIKD  163 (173)
Q Consensus        93 ~~~Aa~~G~~~~v~~LL~~Ga~~------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~---~~ei~~  163 (173)
                      +++|+..|+.+++++|++.|+++      +.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+   +.++++
T Consensus       110 L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~  189 (231)
T 3aji_A          110 LHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAK  189 (231)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCCHHHHHHHCCCHHHHH
Confidence            34499999999999999988877      448999999999999999999999999999999999999986   368888


Q ss_pred             HHHhhhh
Q 030701          164 LILNFSV  170 (173)
Q Consensus       164 lLl~~~~  170 (173)
                      +|++++.
T Consensus       190 ~Ll~~ga  196 (231)
T 3aji_A          190 FLVTQGA  196 (231)
T ss_dssp             HHHHTTC
T ss_pred             HHHHCCC
Confidence            8887653

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.37  E-value=1.2e-12  Score=103.13  Aligned_cols=77  Identities=17%  Similarity=0.127  Sum_probs=68.8

Q ss_pred             HHHHHcCCHHHHHHHHH---CCCCC------CCcHHHHHHHcCC---------HHHHHHHHHcCCCc-------ccccCC
Q 030701           94 GMLAVEGTYDKMEALLS---QNIHP------VDILLMLAASEGD---------KPKIEELLRAGASY-------TVKDAD  148 (173)
Q Consensus        94 ~~Aa~~G~~~~v~~LL~---~Ga~~------~dTpLh~Aa~~g~---------~~~v~~LL~~GAdi-------~~~d~~  148 (173)
                      |+|+..|+.+++++|++   .|+++      +.||||+|+..++         .+++++|++.|+++       +.+|.+
T Consensus       145 ~~A~~~g~~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~  224 (260)
T 3jxi_A          145 SLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNND  224 (260)
T ss_dssp             HHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTT
T ss_pred             HHHHHcCCHHHHHHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCC
Confidence            34999999999999999   89887      4599999998887         79999999999999       789999


Q ss_pred             CCchhhhcC---chHHHHHHHhhhh
Q 030701          149 GRTALERAP---SEEIKDLILNFSV  170 (173)
Q Consensus       149 G~TpLh~A~---~~ei~~lLl~~~~  170 (173)
                      |.||||+|+   +.+++++|++...
T Consensus       225 g~tpL~~A~~~g~~~~v~~Ll~~g~  249 (260)
T 3jxi_A          225 GLSPLMMAAKTGKIGIFQHIIRREI  249 (260)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHhCC
Confidence            999999997   4789999987654

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.35  E-value=2.4e-12  Score=99.72  Aligned_cols=62  Identities=29%  Similarity=0.301  Sum_probs=29.2

Q ss_pred             HHHcCCHHHHHHHHHCCCCC------CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhcC
Q 030701           96 LAVEGTYDKMEALLSQNIHP------VDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAP  157 (173)
Q Consensus        96 Aa~~G~~~~v~~LL~~Ga~~------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~  157 (173)
                      |+..|+.+++++|++.|+++      +.||||+|+..|+.+++++|+++|+|++.+|.+|.||||+|.
T Consensus       151 A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~  218 (237)
T 3b7b_A          151 AAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCAS  218 (237)
T ss_dssp             HHHHCCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHSC
T ss_pred             HHHCCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCCccCCCCCCHHHHHH
Confidence            44444444444444444443      224444444444444444444444444444444444444444

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.35  E-value=1.9e-12  Score=102.98  Aligned_cols=78  Identities=21%  Similarity=0.235  Sum_probs=69.9

Q ss_pred             HHHHHHcCCHHHHHHHHH---CCCCC------CCcHHHHHHHcCC---------HHHHHHHHHcCCCcc-------cccC
Q 030701           93 MGMLAVEGTYDKMEALLS---QNIHP------VDILLMLAASEGD---------KPKIEELLRAGASYT-------VKDA  147 (173)
Q Consensus        93 ~~~Aa~~G~~~~v~~LL~---~Ga~~------~dTpLh~Aa~~g~---------~~~v~~LL~~GAdi~-------~~d~  147 (173)
                      +|+|+..|+.+++++|++   .|+++      +.||||+|+..|+         .+++++|++.|++++       .+|.
T Consensus       152 L~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~  231 (273)
T 2pnn_A          152 LSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNR  231 (273)
T ss_dssp             HHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCT
T ss_pred             HHHHHHcCCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCC
Confidence            334999999999999999   89887      4499999999998         899999999999997       5899


Q ss_pred             CCCchhhhcC---chHHHHHHHhhhh
Q 030701          148 DGRTALERAP---SEEIKDLILNFSV  170 (173)
Q Consensus       148 ~G~TpLh~A~---~~ei~~lLl~~~~  170 (173)
                      +|.||||+|+   +.+++++|+++.+
T Consensus       232 ~g~TpL~~A~~~g~~~iv~~Ll~~ga  257 (273)
T 2pnn_A          232 KGLTPLALAASSGKIGVLAYILQREI  257 (273)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHhChHHHHHHHHHCCC
Confidence            9999999997   4789999998876

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.35  E-value=2.1e-12  Score=109.04  Aligned_cols=73  Identities=26%  Similarity=0.338  Sum_probs=38.4

Q ss_pred             HHHcCCHHHHHHHHHCCCCC------CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhcC---chHHHHHHH
Q 030701           96 LAVEGTYDKMEALLSQNIHP------VDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAP---SEEIKDLIL  166 (173)
Q Consensus        96 Aa~~G~~~~v~~LL~~Ga~~------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~---~~ei~~lLl  166 (173)
                      ||..|+.++|++|++.|+++      +.||||+|+..|+.+++++|++.|++++.++.+|.||||+|+   +.+++++|+
T Consensus        21 Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll  100 (437)
T 1n11_A           21 ASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLL  100 (437)
T ss_dssp             HHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHH
Confidence            55555555555555555544      225555555555555555555555555555555555555554   244555554


Q ss_pred             hh
Q 030701          167 NF  168 (173)
Q Consensus       167 ~~  168 (173)
                      ++
T Consensus       101 ~~  102 (437)
T 1n11_A          101 EN  102 (437)
T ss_dssp             HH
T ss_pred             hC
Confidence            43

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.34  E-value=3.2e-12  Score=99.46  Aligned_cols=78  Identities=24%  Similarity=0.339  Sum_probs=69.5

Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCC------------CCcHHHHHHHcCCHHHHHHHHHcCCCcccccC-CCCchhhhcC--
Q 030701           93 MGMLAVEGTYDKMEALLSQNIHP------------VDILLMLAASEGDKPKIEELLRAGASYTVKDA-DGRTALERAP--  157 (173)
Q Consensus        93 ~~~Aa~~G~~~~v~~LL~~Ga~~------------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~-~G~TpLh~A~--  157 (173)
                      +++|+..|+.+++++|++.|+++            +.||||+|+..|+.+++++|++.|++++.++. .|.||||+|+  
T Consensus        82 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~  161 (236)
T 1ikn_D           82 LHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDL  161 (236)
T ss_dssp             HHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHT
T ss_pred             HHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHc
Confidence            33499999999999999998742            44999999999999999999999999999998 9999999997  


Q ss_pred             -chHHHHHHHhhhh
Q 030701          158 -SEEIKDLILNFSV  170 (173)
Q Consensus       158 -~~ei~~lLl~~~~  170 (173)
                       +.+++++|+++++
T Consensus       162 ~~~~~v~~Ll~~ga  175 (236)
T 1ikn_D          162 QNPDLVSLLLKCGA  175 (236)
T ss_dssp             TCHHHHHHHHTTTC
T ss_pred             CCHHHHHHHHHcCC
Confidence             4789999988754

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.34  E-value=5.3e-13  Score=102.36  Aligned_cols=77  Identities=16%  Similarity=0.117  Sum_probs=66.7

Q ss_pred             HHHHcCC------HHHHHHHHHCCCCC------CC-cHHHHHHHcC-----CHHHHHHHHH-cCCCcccccCCCCchhhh
Q 030701           95 MLAVEGT------YDKMEALLSQNIHP------VD-ILLMLAASEG-----DKPKIEELLR-AGASYTVKDADGRTALER  155 (173)
Q Consensus        95 ~Aa~~G~------~~~v~~LL~~Ga~~------~d-TpLh~Aa~~g-----~~~~v~~LL~-~GAdi~~~d~~G~TpLh~  155 (173)
                      +|+..|+      .+++++||+.|+++      +. ||||+|+..+     +.+++++|+. .|+|++.+|..|+||||+
T Consensus        81 ~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~  160 (186)
T 3t8k_A           81 PLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEF  160 (186)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHH
T ss_pred             HHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHH
Confidence            4888887      68899999999998      55 9999999854     3568999999 999999999999999999


Q ss_pred             cC---chHHHHHHHhhhhc
Q 030701          156 AP---SEEIKDLILNFSVQ  171 (173)
Q Consensus       156 A~---~~ei~~lLl~~~~~  171 (173)
                      |.   ..+++++|+.|..+
T Consensus       161 A~~~~~~~~v~~L~~~~~~  179 (186)
T 3t8k_A          161 VKRCQKPIALKMMEDYIKK  179 (186)
T ss_dssp             HHTTTCHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHH
Confidence            97   37899999888653

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.33  E-value=5.2e-12  Score=99.37  Aligned_cols=76  Identities=22%  Similarity=0.187  Sum_probs=69.2

Q ss_pred             HHHHHcCCHHHHHHHHHCCCCC------CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhcC---chHHHHH
Q 030701           94 GMLAVEGTYDKMEALLSQNIHP------VDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAP---SEEIKDL  164 (173)
Q Consensus        94 ~~Aa~~G~~~~v~~LL~~Ga~~------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~---~~ei~~l  164 (173)
                      ++|+..|+.+++++|++.|+++      +.||||+|+..|+.+++++|++.|++++..+..|.||||+|+   +.+++++
T Consensus        44 ~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~  123 (285)
T 1wdy_A           44 HNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKF  123 (285)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHH
Confidence            3499999999999999999987      449999999999999999999999999999999999999997   4788888


Q ss_pred             HHhhh
Q 030701          165 ILNFS  169 (173)
Q Consensus       165 Ll~~~  169 (173)
                      |+++.
T Consensus       124 Ll~~g  128 (285)
T 1wdy_A          124 LYKRG  128 (285)
T ss_dssp             HHHTT
T ss_pred             HHHhC
Confidence            88764

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.33  E-value=2.4e-12  Score=108.76  Aligned_cols=73  Identities=23%  Similarity=0.264  Sum_probs=37.7

Q ss_pred             HHHcCCHHHHHHHHHCCCCC------CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhcC---chHHHHHHH
Q 030701           96 LAVEGTYDKMEALLSQNIHP------VDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAP---SEEIKDLIL  166 (173)
Q Consensus        96 Aa~~G~~~~v~~LL~~Ga~~------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~---~~ei~~lLl  166 (173)
                      |+..|+.+++++|++.|+++      +.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+   +.+++++|+
T Consensus       285 A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll  364 (437)
T 1n11_A          285 VAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLL  364 (437)
T ss_dssp             HHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHhCCccCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHCChHHHHHHHH
Confidence            55555555555555555443      225555555555555555555555555555555555555554   244555555


Q ss_pred             hh
Q 030701          167 NF  168 (173)
Q Consensus       167 ~~  168 (173)
                      ++
T Consensus       365 ~~  366 (437)
T 1n11_A          365 KN  366 (437)
T ss_dssp             HT
T ss_pred             HC
Confidence            44

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.32  E-value=1.6e-12  Score=104.97  Aligned_cols=74  Identities=22%  Similarity=0.166  Sum_probs=54.6

Q ss_pred             HHHcCCHHHHHHHHHCCCCC----CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhcC---chHHHHHHHhh
Q 030701           96 LAVEGTYDKMEALLSQNIHP----VDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAP---SEEIKDLILNF  168 (173)
Q Consensus        96 Aa~~G~~~~v~~LL~~Ga~~----~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~---~~ei~~lLl~~  168 (173)
                      |+..|+.+++++|++.|+++    +.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+   +.+++++|+++
T Consensus        38 A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~  117 (285)
T 3kea_A           38 AIADNNVRLVCTLLNAGALKNLLENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKK  117 (285)
T ss_dssp             HHHTTCHHHHHHHHHTTGGGSCCTTCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhc
Confidence            77777777777777777766    447777777777777777777777777777777777777775   35677777665


Q ss_pred             h
Q 030701          169 S  169 (173)
Q Consensus       169 ~  169 (173)
                      .
T Consensus       118 g  118 (285)
T 3kea_A          118 N  118 (285)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.32  E-value=2.9e-12  Score=105.90  Aligned_cols=78  Identities=14%  Similarity=0.197  Sum_probs=70.9

Q ss_pred             HHHHHHcC--CHHHHHHHHHCCCCC------CCcHHHHHHHcCCHHHHHHHHHcCCC-----cccccCCCCchhhhcC--
Q 030701           93 MGMLAVEG--TYDKMEALLSQNIHP------VDILLMLAASEGDKPKIEELLRAGAS-----YTVKDADGRTALERAP--  157 (173)
Q Consensus        93 ~~~Aa~~G--~~~~v~~LL~~Ga~~------~dTpLh~Aa~~g~~~~v~~LL~~GAd-----i~~~d~~G~TpLh~A~--  157 (173)
                      +++|+..|  +.+++++|++.|+++      +.||||+|+..|+.+++++|++.|++     ++..|..|.||||+|+  
T Consensus       142 L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~  221 (364)
T 3ljn_A          142 LHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILI  221 (364)
T ss_dssp             HHHHHHSCGGGHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTT
T ss_pred             HHHHHHcCCchHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHc
Confidence            44599999  999999999999987      44999999999999999999999999     9999999999999997  


Q ss_pred             -chHHHHHHHhhhh
Q 030701          158 -SEEIKDLILNFSV  170 (173)
Q Consensus       158 -~~ei~~lLl~~~~  170 (173)
                       +.+++++|+++..
T Consensus       222 g~~~~v~~Ll~~ga  235 (364)
T 3ljn_A          222 NWEDVAMRFVEMGI  235 (364)
T ss_dssp             TCHHHHHHHHTTTC
T ss_pred             CCHHHHHHHHHcCC
Confidence             4789999988653

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.32  E-value=5.7e-12  Score=101.43  Aligned_cols=75  Identities=31%  Similarity=0.395  Sum_probs=65.9

Q ss_pred             HHHHHHcCCHHHHHHHHHCCC-CC--------------------------------------------CCcHHHHHHHcC
Q 030701           93 MGMLAVEGTYDKMEALLSQNI-HP--------------------------------------------VDILLMLAASEG  127 (173)
Q Consensus        93 ~~~Aa~~G~~~~v~~LL~~Ga-~~--------------------------------------------~dTpLh~Aa~~g  127 (173)
                      +++|+..|+.+++++|++.|+ ++                                            +.||||+|+..|
T Consensus       115 Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~g  194 (276)
T 4hbd_A          115 LHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHG  194 (276)
T ss_dssp             HHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHTT
T ss_pred             HHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCccccCCCCCCHHHHHHHcC
Confidence            344999999999999999887 22                                            239999999999


Q ss_pred             CHHHHHHHHHcCCCcccccCCCCchhhhcC---chHHHHHHHh
Q 030701          128 DKPKIEELLRAGASYTVKDADGRTALERAP---SEEIKDLILN  167 (173)
Q Consensus       128 ~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~---~~ei~~lLl~  167 (173)
                      +.+++++|++.|+|++.+|.+|.||||+|+   +.+++++|++
T Consensus       195 ~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~  237 (276)
T 4hbd_A          195 RVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLA  237 (276)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHT
T ss_pred             CHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHh
Confidence            999999999999999999999999999997   4789999887

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.32  E-value=5.9e-12  Score=97.52  Aligned_cols=75  Identities=21%  Similarity=0.249  Sum_probs=52.6

Q ss_pred             HHHHcCCHHHHHHHHHCCCCC------CCcHHHHHHHcCCHHHHHHHHHcC-CCcccccCCCCchhhhcC---chHHHHH
Q 030701           95 MLAVEGTYDKMEALLSQNIHP------VDILLMLAASEGDKPKIEELLRAG-ASYTVKDADGRTALERAP---SEEIKDL  164 (173)
Q Consensus        95 ~Aa~~G~~~~v~~LL~~Ga~~------~dTpLh~Aa~~g~~~~v~~LL~~G-Adi~~~d~~G~TpLh~A~---~~ei~~l  164 (173)
                      +|+..|+.+++++|++.|+++      +.||||+|+..|+.+++++|++.| ++++..+..|.||||+|+   +.+++++
T Consensus        50 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~  129 (237)
T 3b7b_A           50 EAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKL  129 (237)
T ss_dssp             HHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             HHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHH
Confidence            377777777777777777665      337777777777777777777776 677777777777777775   3566666


Q ss_pred             HHhhh
Q 030701          165 ILNFS  169 (173)
Q Consensus       165 Ll~~~  169 (173)
                      |+++.
T Consensus       130 Ll~~g  134 (237)
T 3b7b_A          130 LLSKG  134 (237)
T ss_dssp             HHHTT
T ss_pred             HHHCC
Confidence            66654

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*

Probab=99.31  E-value=6.3e-12  Score=109.38  Aligned_cols=80  Identities=19%  Similarity=0.282  Sum_probs=72.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHCCCCC------------CCcHHHHHHH---cCCHHHHHHHHHcCCCcccccCCCCc
Q 030701           87 EQYFNYMGMLAVEGTYDKMEALLSQNIHP------------VDILLMLAAS---EGDKPKIEELLRAGASYTVKDADGRT  151 (173)
Q Consensus        87 ~~l~~~~~~Aa~~G~~~~v~~LL~~Ga~~------------~dTpLh~Aa~---~g~~~~v~~LL~~GAdi~~~d~~G~T  151 (173)
                      +.|+.    |+..|+.+.|+.||+.|+++            +.||||+|+.   .|+.+++++|+++|+|+|.+|.+|.|
T Consensus       134 ~~L~~----A~~~g~~~~v~~ll~~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~vn~~d~~g~T  209 (497)
T 3lvq_E          134 QRLWT----AICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNT  209 (497)
T ss_dssp             HHHHH----HHHHTCHHHHHHHHHTTCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCTTCCCSSSCC
T ss_pred             HHHHH----HHhccCHHHHHHHHhhcccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCCCccCCCCCc
Confidence            55777    99999999999999999885            3399999966   89999999999999999999999999


Q ss_pred             hhhhcC---chHHHHHHHhhhh
Q 030701          152 ALERAP---SEEIKDLILNFSV  170 (173)
Q Consensus       152 pLh~A~---~~ei~~lLl~~~~  170 (173)
                      |||+|+   +.+++++|+++++
T Consensus       210 pLh~A~~~g~~~~v~~Ll~~ga  231 (497)
T 3lvq_E          210 ALHYAALYNQPDCLKLLLKGRA  231 (497)
T ss_dssp             HHHHHTTTTCHHHHHHHHHTCC
T ss_pred             HHHHHHHcCCHHHHHHHHHcCC
Confidence            999998   4789999998764

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.31  E-value=7.2e-12  Score=102.49  Aligned_cols=81  Identities=21%  Similarity=0.129  Sum_probs=64.7

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHCCCCC-------CCcHHHHHHHcCCHHHHHHHHHcCCCccc-------------
Q 030701           85 DVEQYFNYMGMLAVEGTYDKMEALLSQNIHP-------VDILLMLAASEGDKPKIEELLRAGASYTV-------------  144 (173)
Q Consensus        85 ~~~~l~~~~~~Aa~~G~~~~v~~LL~~Ga~~-------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~-------------  144 (173)
                      +.+.|+.    |+..|++++|++||+.|+++       +.||||+|+..|+.++|++|+++|++++.             
T Consensus        25 ~~t~L~~----Av~~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~  100 (337)
T 4g8k_A           25 DNHLLIK----AVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAA  100 (337)
T ss_dssp             HHHHHHH----HHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred             CChHHHH----HHHcCCHHHHHHHHHCCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHH
Confidence            3445666    99999999999999999987       34999999999999999999999987654             


Q ss_pred             --------------------ccCCCCchhhhcC---chHHHHHHHhhh
Q 030701          145 --------------------KDADGRTALERAP---SEEIKDLILNFS  169 (173)
Q Consensus       145 --------------------~d~~G~TpLh~A~---~~ei~~lLl~~~  169 (173)
                                          .|..|.||||+|+   ..+++++|+++.
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~g  148 (337)
T 4g8k_A          101 IAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRG  148 (337)
T ss_dssp             HHTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTT
T ss_pred             hcccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcC
Confidence                                4566777888776   356777766543

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.31  E-value=7.6e-12  Score=94.58  Aligned_cols=74  Identities=22%  Similarity=0.270  Sum_probs=40.4

Q ss_pred             HHHcCCHHHHHHHH-HCCCCC------CCcHHHHHHHcCCHHHHHHHHHcC-CCcccccCCCCchhhhcC---c-----h
Q 030701           96 LAVEGTYDKMEALL-SQNIHP------VDILLMLAASEGDKPKIEELLRAG-ASYTVKDADGRTALERAP---S-----E  159 (173)
Q Consensus        96 Aa~~G~~~~v~~LL-~~Ga~~------~dTpLh~Aa~~g~~~~v~~LL~~G-Adi~~~d~~G~TpLh~A~---~-----~  159 (173)
                      |+..|+.+++++|+ ..+.++      +.||||+|+..|+.+++++|++.| ++++.+|..|.||||+|+   +     .
T Consensus        79 A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~  158 (201)
T 3hra_A           79 AGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQ  158 (201)
T ss_dssp             HHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHH
T ss_pred             HHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHH
Confidence            55555555555555 333233      225666666666666666666555 566666666666666554   1     3


Q ss_pred             HHHHHHHhhh
Q 030701          160 EIKDLILNFS  169 (173)
Q Consensus       160 ei~~lLl~~~  169 (173)
                      +++++|+++.
T Consensus       159 ~~v~~Ll~~g  168 (201)
T 3hra_A          159 DIVKLLMENG  168 (201)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHHHHHCC
Confidence            5555555543

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.31  E-value=1.1e-11  Score=97.47  Aligned_cols=75  Identities=23%  Similarity=0.187  Sum_probs=68.9

Q ss_pred             HHHHcCCHHHHHHHHHCCCCC-------CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhcC---chHHHHH
Q 030701           95 MLAVEGTYDKMEALLSQNIHP-------VDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAP---SEEIKDL  164 (173)
Q Consensus        95 ~Aa~~G~~~~v~~LL~~Ga~~-------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~---~~ei~~l  164 (173)
                      .|+..|+.+++++|++.|+++       +.||||+|+..|+.+++++|++.|++++.++.+|.||||+|+   +.+++++
T Consensus        11 ~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~   90 (285)
T 1wdy_A           11 KAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKL   90 (285)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHH
Confidence            499999999999999999877       349999999999999999999999999999999999999997   4788998


Q ss_pred             HHhhh
Q 030701          165 ILNFS  169 (173)
Q Consensus       165 Ll~~~  169 (173)
                      |+++.
T Consensus        91 Ll~~g   95 (285)
T 1wdy_A           91 FLSKG   95 (285)
T ss_dssp             HHHTT
T ss_pred             HHHcC
Confidence            88764

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.29  E-value=7.5e-12  Score=105.95  Aligned_cols=78  Identities=21%  Similarity=0.186  Sum_probs=70.6

Q ss_pred             HHHHHHc-CCHHHHHHHHHCCCCC--------CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhcC---chH
Q 030701           93 MGMLAVE-GTYDKMEALLSQNIHP--------VDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAP---SEE  160 (173)
Q Consensus        93 ~~~Aa~~-G~~~~v~~LL~~Ga~~--------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~---~~e  160 (173)
                      ++.|+.. |++++++.||+.|+++        +.||||+|+..|+.+++++|+++|++++..|..|.||||+|+   +.+
T Consensus       203 L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~  282 (368)
T 3jue_A          203 LFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTG  282 (368)
T ss_dssp             HHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHH
T ss_pred             HHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCcHH
Confidence            3449999 9999999999999987        239999999999999999999999999999999999999997   478


Q ss_pred             HHHHHHhhhh
Q 030701          161 IKDLILNFSV  170 (173)
Q Consensus       161 i~~lLl~~~~  170 (173)
                      ++++|+++.+
T Consensus       283 ~v~~LL~~Ga  292 (368)
T 3jue_A          283 LACLFLKRGA  292 (368)
T ss_dssp             HHHHHHHTTC
T ss_pred             HHHHHHHCcC
Confidence            9999988754

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.28  E-value=2.1e-11  Score=98.86  Aligned_cols=79  Identities=14%  Similarity=0.090  Sum_probs=70.8

Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCCC------------CCcHHHHHHHc---CCHHHHHHHHHcCCCcccccCCCCchhhhc
Q 030701           92 YMGMLAVEGTYDKMEALLSQNIHP------------VDILLMLAASE---GDKPKIEELLRAGASYTVKDADGRTALERA  156 (173)
Q Consensus        92 ~~~~Aa~~G~~~~v~~LL~~Ga~~------------~dTpLh~Aa~~---g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A  156 (173)
                      .++.|+..|+.+.++.++..|+++            +.||||+|+..   |+.+++++|+++|++++.+|.+|.||||+|
T Consensus       133 ~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpLh~A  212 (278)
T 1dcq_A          133 SLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYC  212 (278)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHH
T ss_pred             hhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHHHHH
Confidence            344599999999999999999884            34999999999   899999999999999999999999999999


Q ss_pred             C---chHHHHHHHhhhh
Q 030701          157 P---SEEIKDLILNFSV  170 (173)
Q Consensus       157 ~---~~ei~~lLl~~~~  170 (173)
                      +   +.+++++|+++++
T Consensus       213 ~~~g~~~~v~~Ll~~ga  229 (278)
T 1dcq_A          213 CLTDNAECLKLLLRGKA  229 (278)
T ss_dssp             HHTTCHHHHHHHHHTTC
T ss_pred             HHcCCHHHHHHHHHcCC
Confidence            7   4789999998754

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.25  E-value=2.6e-11  Score=93.24  Aligned_cols=73  Identities=18%  Similarity=0.255  Sum_probs=43.1

Q ss_pred             HHHcCCHHHHHHHHHCCCCC-------CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhcC---chHHHHHH
Q 030701           96 LAVEGTYDKMEALLSQNIHP-------VDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAP---SEEIKDLI  165 (173)
Q Consensus        96 Aa~~G~~~~v~~LL~~Ga~~-------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~---~~ei~~lL  165 (173)
                      |+..|+.+++++|++.|.++       +.||||+|+..|+.+++++|++.|++++..+..|.||||+|+   +.+++++|
T Consensus        49 A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L  128 (240)
T 3eu9_A           49 AAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYL  128 (240)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHH
Confidence            66666666666666666544       226666666666666666666666666666666666666654   24555555


Q ss_pred             Hhh
Q 030701          166 LNF  168 (173)
Q Consensus       166 l~~  168 (173)
                      +++
T Consensus       129 l~~  131 (240)
T 3eu9_A          129 IAK  131 (240)
T ss_dssp             HHT
T ss_pred             Hhc
Confidence            543

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.23  E-value=4.2e-11  Score=98.15  Aligned_cols=81  Identities=19%  Similarity=0.257  Sum_probs=71.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHCCCCC------------CCcHHHHHHHc---CCHHHHHHHHHcCCCcccccCCCC
Q 030701           86 VEQYFNYMGMLAVEGTYDKMEALLSQNIHP------------VDILLMLAASE---GDKPKIEELLRAGASYTVKDADGR  150 (173)
Q Consensus        86 ~~~l~~~~~~Aa~~G~~~~v~~LL~~Ga~~------------~dTpLh~Aa~~---g~~~~v~~LL~~GAdi~~~d~~G~  150 (173)
                      ...++.    |+..|+.+.++.|+..|+++            +.||||+|+..   |+.+++++|++.|++++.+|.+|.
T Consensus       152 ~~~L~~----A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~  227 (301)
T 2b0o_E          152 PQRLWT----AICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGN  227 (301)
T ss_dssp             HHHHHH----HHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCC
T ss_pred             HHHHhh----hhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCC
Confidence            345666    99999999999999999886            12999999997   899999999999999999999999


Q ss_pred             chhhhcC---chHHHHHHHhhhh
Q 030701          151 TALERAP---SEEIKDLILNFSV  170 (173)
Q Consensus       151 TpLh~A~---~~ei~~lLl~~~~  170 (173)
                      ||||+|+   +.+++++|+++.+
T Consensus       228 TpLh~A~~~g~~~~v~~Ll~~ga  250 (301)
T 2b0o_E          228 TALHYAALYNQPDCLKLLLKGRA  250 (301)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCC
Confidence            9999997   4789999998754

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.21  E-value=2.1e-11  Score=93.70  Aligned_cols=76  Identities=24%  Similarity=0.247  Sum_probs=58.1

Q ss_pred             HHHcCC-HHHHHHHHHCCCCC-------CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhcC---chHHHHH
Q 030701           96 LAVEGT-YDKMEALLSQNIHP-------VDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAP---SEEIKDL  164 (173)
Q Consensus        96 Aa~~G~-~~~v~~LL~~Ga~~-------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~---~~ei~~l  164 (173)
                      |+..++ .+++++|++.|+++       +.||||+|+..|+.+++++|++.|++++.+|..|.||||+|.   +.+++++
T Consensus       149 a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~  228 (240)
T 3eu9_A          149 AAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINH  228 (240)
T ss_dssp             HHHHCCSSTTHHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCBCTTSCBHHHHHHHTTCHHHHHH
T ss_pred             HHHhCChHHHHHHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHH
Confidence            554444 55666666666555       238999999999999999999999999999999999999987   4788888


Q ss_pred             HHhhhhc
Q 030701          165 ILNFSVQ  171 (173)
Q Consensus       165 Ll~~~~~  171 (173)
                      |+++..+
T Consensus       229 L~~~~~~  235 (240)
T 3eu9_A          229 LQEARQA  235 (240)
T ss_dssp             HHHHC--
T ss_pred             HHHhhhc
Confidence            8877654

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.20  E-value=3.9e-11  Score=98.11  Aligned_cols=73  Identities=21%  Similarity=0.181  Sum_probs=49.4

Q ss_pred             HHHHHHcCCHHHHHHHHHC-CCCC------CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhcC---chHHH
Q 030701           93 MGMLAVEGTYDKMEALLSQ-NIHP------VDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAP---SEEIK  162 (173)
Q Consensus        93 ~~~Aa~~G~~~~v~~LL~~-Ga~~------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~---~~ei~  162 (173)
                      +|+|+..|+.++++.|+.. |+++      +.||||+|+..|+.++|++|+++|||+|.+     +|||+|+   +.+++
T Consensus       243 L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~n~~-----~~L~~A~~~~~~~iv  317 (337)
T 4g8k_A          243 LILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCG-----DLVMTARRNYDHSLV  317 (337)
T ss_dssp             HHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCSSTTC-----CHHHHHHHTTCHHHH
T ss_pred             HHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC-----CHHHHHHHcCCHHHH
Confidence            3447777777777777764 5554      347777777777777777777777777653     4777775   35677


Q ss_pred             HHHHhhhh
Q 030701          163 DLILNFSV  170 (173)
Q Consensus       163 ~lLl~~~~  170 (173)
                      ++|+++++
T Consensus       318 ~~Ll~~GA  325 (337)
T 4g8k_A          318 KVLLSHGA  325 (337)
T ss_dssp             HHHHHTTC
T ss_pred             HHHHHCcC
Confidence            77776653

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.18  E-value=1.9e-11  Score=100.65  Aligned_cols=77  Identities=16%  Similarity=0.151  Sum_probs=60.5

Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCC------CCcHHHHHHHcCC---HHHHHHHHHcC-CCcccccCCCCchhhhcC-----
Q 030701           93 MGMLAVEGTYDKMEALLSQNIHP------VDILLMLAASEGD---KPKIEELLRAG-ASYTVKDADGRTALERAP-----  157 (173)
Q Consensus        93 ~~~Aa~~G~~~~v~~LL~~Ga~~------~dTpLh~Aa~~g~---~~~v~~LL~~G-Adi~~~d~~G~TpLh~A~-----  157 (173)
                      +|+|+..|+.++|++||+.|+++      +.||||+|+..|+   .++++.|++.+ ++++.+|..|.||||+|+     
T Consensus       135 Lh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~  214 (327)
T 1sw6_A          135 LHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGM  214 (327)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTS
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccc
Confidence            34488889999999898888887      4489999888887   67777777776 788888888899998875     


Q ss_pred             --chHHHHHHHhhh
Q 030701          158 --SEEIKDLILNFS  169 (173)
Q Consensus       158 --~~ei~~lLl~~~  169 (173)
                        ..+++++|++..
T Consensus       215 ~g~~~~v~~Ll~~~  228 (327)
T 1sw6_A          215 TGCSAAAKYYLDIL  228 (327)
T ss_dssp             TTCHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHH
Confidence              357777776653

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.18  E-value=1e-11  Score=105.35  Aligned_cols=78  Identities=15%  Similarity=0.168  Sum_probs=67.4

Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCCC--------CCcHHHHHHHcCCHHHHHHHHHcCCCccc--ccCCCCchhhhcC-c--
Q 030701           92 YMGMLAVEGTYDKMEALLSQNIHP--------VDILLMLAASEGDKPKIEELLRAGASYTV--KDADGRTALERAP-S--  158 (173)
Q Consensus        92 ~~~~Aa~~G~~~~v~~LL~~Ga~~--------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~--~d~~G~TpLh~A~-~--  158 (173)
                      ++++||..|+.++|++|++.|+++        ..||||+|+..|+.++|++|+++|++++.  .|.+|.||||+|+ .  
T Consensus       131 pL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G  210 (376)
T 2aja_A          131 AFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRG  210 (376)
T ss_dssp             HHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHHHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTC
T ss_pred             HHHHHHHcCCHHHHHHHHhCCCCccccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCC
Confidence            344599999999999999999763        23999999999999999999999999987  8889999999998 4  


Q ss_pred             -hHHHHHHHhhh
Q 030701          159 -EEIKDLILNFS  169 (173)
Q Consensus       159 -~ei~~lLl~~~  169 (173)
                       .+++++|++..
T Consensus       211 ~~eiv~~Ll~~g  222 (376)
T 2aja_A          211 HHNVINFLLDCP  222 (376)
T ss_dssp             CHHHHHHHTTSH
T ss_pred             CHHHHHHHHhCC
Confidence             68888887643

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.14  E-value=9.2e-11  Score=96.49  Aligned_cols=67  Identities=18%  Similarity=0.242  Sum_probs=59.0

Q ss_pred             HHHHHHH----cCCHHHHHHHHHCC-----------------------------------------------CCC----C
Q 030701           92 YMGMLAV----EGTYDKMEALLSQN-----------------------------------------------IHP----V  116 (173)
Q Consensus        92 ~~~~Aa~----~G~~~~v~~LL~~G-----------------------------------------------a~~----~  116 (173)
                      ++|+|+.    .|+.+++++|++.+                                               .+.    +
T Consensus       204 pLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~~~~Ll~~~~n~~d~~G  283 (327)
T 1sw6_A          204 ILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNG  283 (327)
T ss_dssp             HHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTCCCTTS
T ss_pred             HHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHHHHHHHHhCCCCCCCCC
Confidence            4566998    89999999998763                                               333    5


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhcCc
Q 030701          117 DILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAPS  158 (173)
Q Consensus       117 dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~~  158 (173)
                      .||||+|+..|+.+++++|+++|||++.+|.+|+||||+|+.
T Consensus       284 ~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~  325 (327)
T 1sw6_A          284 DTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGAG  325 (327)
T ss_dssp             CCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTCC
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHh
Confidence            599999999999999999999999999999999999999974

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.13  E-value=6.3e-11  Score=99.04  Aligned_cols=79  Identities=16%  Similarity=0.123  Sum_probs=69.7

Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCCC------CCcHHHHHHHcCCHHHHHHHHHcC---CCcccccCCCCchhhhcC-----
Q 030701           92 YMGMLAVEGTYDKMEALLSQNIHP------VDILLMLAASEGDKPKIEELLRAG---ASYTVKDADGRTALERAP-----  157 (173)
Q Consensus        92 ~~~~Aa~~G~~~~v~~LL~~Ga~~------~dTpLh~Aa~~g~~~~v~~LL~~G---Adi~~~d~~G~TpLh~A~-----  157 (173)
                      ++++|+..|+.++|++|++.|+++      +.||||+|+..|+.+++++|++.|   ++++..|.+|.||||+|+     
T Consensus       169 pL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~  248 (373)
T 2fo1_E          169 PLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGR  248 (373)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCST
T ss_pred             HHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCc
Confidence            345599999999999999999987      449999999999999999999988   899999999999999986     


Q ss_pred             -chHHHHHHHhhhh
Q 030701          158 -SEEIKDLILNFSV  170 (173)
Q Consensus       158 -~~ei~~lLl~~~~  170 (173)
                       ..+++++|+++..
T Consensus       249 ~~~~~v~~Ll~~g~  262 (373)
T 2fo1_E          249 DQVASAKLLVEKGA  262 (373)
T ss_dssp             THHHHHHHHHHHTC
T ss_pred             chHHHHHHHHHCCC
Confidence             3578888887653

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.08  E-value=1.6e-10  Score=77.74  Aligned_cols=55  Identities=36%  Similarity=0.430  Sum_probs=49.8

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhcC---chHHHHHHHhhhh
Q 030701          116 VDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAP---SEEIKDLILNFSV  170 (173)
Q Consensus       116 ~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~---~~ei~~lLl~~~~  170 (173)
                      +.||||+|+..|+.+++++|++.|++++.+|.+|.||||+|+   +.+++++|+++..
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga   59 (93)
T 1n0q_A            2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA   59 (93)
T ss_dssp             -CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            459999999999999999999999999999999999999997   4789999987653

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.07  E-value=8.9e-11  Score=81.66  Aligned_cols=59  Identities=17%  Similarity=0.164  Sum_probs=53.2

Q ss_pred             HHHHcCCHHHHHHHHHCCCCC------CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchh
Q 030701           95 MLAVEGTYDKMEALLSQNIHP------VDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTAL  153 (173)
Q Consensus        95 ~Aa~~G~~~~v~~LL~~Ga~~------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpL  153 (173)
                      +|+..|+.+++++|++.|+++      +.||||+|+..|+.+++++|+++|++++.++..|.+|-
T Consensus        48 ~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~n~~~~~~~~~~  112 (115)
T 2l6b_A           48 LAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHH  112 (115)
T ss_dssp             HHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTSSSHHHHSCCCC---
T ss_pred             HHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCccccccc
Confidence            499999999999999999987      44999999999999999999999999999999999874

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.06  E-value=4.9e-11  Score=101.13  Aligned_cols=78  Identities=13%  Similarity=0.100  Sum_probs=62.7

Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCC------C---CCcHHHHHHHcCCHHHHHHHHHcCCC---cccccCCCCchhhhcC--
Q 030701           92 YMGMLAVEGTYDKMEALLSQNIH------P---VDILLMLAASEGDKPKIEELLRAGAS---YTVKDADGRTALERAP--  157 (173)
Q Consensus        92 ~~~~Aa~~G~~~~v~~LL~~Ga~------~---~dTpLh~Aa~~g~~~~v~~LL~~GAd---i~~~d~~G~TpLh~A~--  157 (173)
                      ++++||..|+.++|++|++.|+.      +   +.||||+|+..|+.++|++|+++|+|   .+..+.+ .||||+|+  
T Consensus        95 ~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~  173 (376)
T 2aja_A           95 ICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAEN  173 (376)
T ss_dssp             HHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHT
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHC
Confidence            44559999999999999999982      2   33999999999999999999999987   3333334 99999997  


Q ss_pred             -chHHHHHHHhhhh
Q 030701          158 -SEEIKDLILNFSV  170 (173)
Q Consensus       158 -~~ei~~lLl~~~~  170 (173)
                       +.+++++|+++..
T Consensus       174 G~~eiv~~Ll~~ga  187 (376)
T 2aja_A          174 GHLHVLNRLCELAP  187 (376)
T ss_dssp             TCHHHHHHHHHSCG
T ss_pred             CCHHHHHHHHHcCC
Confidence             4789999988754

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=98.77  E-value=7.9e-09  Score=71.68  Aligned_cols=55  Identities=29%  Similarity=0.406  Sum_probs=49.9

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhcC---chHHHHHHHhhhh
Q 030701          116 VDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAP---SEEIKDLILNFSV  170 (173)
Q Consensus       116 ~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~---~~ei~~lLl~~~~  170 (173)
                      +.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+   +.+++++|+++..
T Consensus        24 g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga   81 (110)
T 2zgd_A           24 LGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGA   81 (110)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             cchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            449999999999999999999999999999999999999997   4789999887653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	173
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	7e-07
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	8e-06
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	2e-06
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	0.001
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	4e-06
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	6e-06
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-05
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	9e-06
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-04
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	1e-05
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-05
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-04
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-04
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	6e-04
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	8e-04
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	0.004
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	0.001
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	0.002
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	0.004

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 45.5 bits (106), Expect = 7e-07
 Identities = 14/89 (15%), Positives = 25/89 (28%), Gaps = 1/89 (1%)

Query: 78  RDDFDRDDVEQYFNYMGMLAVEGTYDKMEALLSQNIHPVDILLMLAASEGDKPKIEELLR 137
           R               G   V     +    ++   +     L  AA  G +     L+ 
Sbjct: 194 RHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVE 253

Query: 138 AGASYTVKDADGRTALERAPSEEIKDLIL 166
                   +  G+TA + A  E+I   + 
Sbjct: 254 NLCDMEAVNKVGQTAFDVA-DEDILGYLE 281

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 42.4 bits (98), Expect = 8e-06
 Identities = 14/38 (36%), Positives = 20/38 (52%)

Query: 119 LLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERA 156
           + + A S GD  ++  LL  GA     + DG TAL +A
Sbjct: 43  VFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQA 80

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.1 bits (102), Expect = 2e-06
 Identities = 14/46 (30%), Positives = 24/46 (52%)

Query: 120 LMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAPSEEIKDLI 165
           L  A+  G  P +  L+R+GA  ++K+    T L  A S  + D++
Sbjct: 181 LHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDIL 226

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.6 bits (80), Expect = 0.001
 Identities = 9/42 (21%), Positives = 18/42 (42%), Gaps = 4/42 (9%)

Query: 120 LMLAASEGDKPKIEELL----RAGASYTVKDADGRTALERAP 157
           L +A  +G+ P +  L+    + G    + +   +T L  A 
Sbjct: 7   LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAV 48

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (101), Expect = 4e-06
 Identities = 13/37 (35%), Positives = 19/37 (51%)

Query: 120 LMLAASEGDKPKIEELLRAGASYTVKDADGRTALERA 156
           L +A+  G  P ++ LL+ GAS  V +    T L  A
Sbjct: 4   LHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMA 40

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (100), Expect = 6e-06
 Identities = 14/37 (37%), Positives = 18/37 (48%)

Query: 120 LMLAASEGDKPKIEELLRAGASYTVKDADGRTALERA 156
           L  AA +G    +  LL+ GAS     +DG T L  A
Sbjct: 334 LHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIA 370

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (97), Expect = 1e-05
 Identities = 16/69 (23%), Positives = 28/69 (40%), Gaps = 7/69 (10%)

Query: 95  MLAVE-GTYDKMEALLSQ--NIHPVDI----LLMLAASEGDKPKIEELLRAGASYTVKDA 147
            +A   G    ++ LL +  + +  ++     L +AA  G     + LL+  A    K  
Sbjct: 5   HVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAK 64

Query: 148 DGRTALERA 156
           D +T L  A
Sbjct: 65  DDQTPLHCA 73

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 42.4 bits (98), Expect = 9e-06
 Identities = 15/37 (40%), Positives = 20/37 (54%)

Query: 120 LMLAASEGDKPKIEELLRAGASYTVKDADGRTALERA 156
           +MLAA EG    +  L++ GAS    DA   TA + A
Sbjct: 225 IMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLA 261

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 38.2 bits (87), Expect = 2e-04
 Identities = 19/74 (25%), Positives = 29/74 (39%), Gaps = 15/74 (20%)

Query: 95  MLAVE--GTYDKMEALLSQNIHPVDI-----LLMLAASEGDKPKIEELLR--------AG 139
            L  E  G+Y   E +  ++++ +D      +L   AS     K E+L+         AG
Sbjct: 5   KLHTEAAGSYAITEPITRESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAG 64

Query: 140 ASYTVKDADGRTAL 153
           A     D D  T L
Sbjct: 65  ADVNAMDCDENTPL 78

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.3 bits (98), Expect = 1e-05
 Identities = 9/37 (24%), Positives = 17/37 (45%)

Query: 120 LMLAASEGDKPKIEELLRAGASYTVKDADGRTALERA 156
           L +AA  G+   ++ LL  GA   + +  G   ++  
Sbjct: 263 LNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFG 299

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.0 bits (94), Expect = 2e-05
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 1/48 (2%)

Query: 121 MLAASEGDKPKIEELL-RAGASYTVKDADGRTALERAPSEEIKDLILN 167
             A +EG       L+ + GA Y + D  G  A + A +E++K   LN
Sbjct: 177 FHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQVKKFFLN 224

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.3 bits (87), Expect = 2e-04
 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%)

Query: 120 LMLAASEGDKPKIEELLRA-GASYTVKDADGRTALERA 156
           L  A  E +  K++ELL +  +    KD DGR  L  +
Sbjct: 4   LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWS 41

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (88), Expect = 2e-04
 Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 117 DILLMLAASEGDKPKIEELLRA-GASYTVKDADGRTALERA 156
           ++++   A  G   +++E + A  +  T  D D RTAL  A
Sbjct: 4   NLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWA 44

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (84), Expect = 6e-04
 Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 119 LLMLAASEGDKPKIEELLRAGASYTVKDAD-GRTALERA 156
           LL+ A    D   +++LL  GA+   ++ + G T L  A
Sbjct: 8   LLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNA 46

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.6 bits (83), Expect = 8e-04
 Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 3/40 (7%)

Query: 120 LMLAASEGDKPKIEELLRAGASYT---VKDADGRTALERA 156
           L LA     +P ++ LL   A +    +++  G+TAL  A
Sbjct: 13  LHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLA 52

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.3 bits (77), Expect = 0.004
 Identities = 14/47 (29%), Positives = 20/47 (42%), Gaps = 3/47 (6%)

Query: 124 ASEGDKPKIEELLRAGASYTVKDADGRTALERA---PSEEIKDLILN 167
                   +E LL+AGA  T +   GRT L  A   P+  +  L+  
Sbjct: 200 VEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRA 246

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.6 bits (80), Expect = 0.001
 Identities = 10/44 (22%), Positives = 16/44 (36%), Gaps = 4/44 (9%)

Query: 119 LLMLAASEGDKPKIEELLR----AGASYTVKDADGRTALERAPS 158
            L LA    +K    E++R      A    ++   +T L  A  
Sbjct: 5   FLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVI 48

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.9 bits (78), Expect = 0.002
 Identities = 9/31 (29%), Positives = 16/31 (51%)

Query: 120 LMLAASEGDKPKIEELLRAGASYTVKDADGR 150
           L  AA+ GD  ++  LL+   +   ++  GR
Sbjct: 5   LASAAARGDLEQLTSLLQNNVNVNAQNGFGR 35

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 34.5 bits (78), Expect = 0.004
 Identities = 12/102 (11%), Positives = 29/102 (28%), Gaps = 5/102 (4%)

Query: 60  FGKNGVDAENAGIYGSQKRDDFDRDDVEQYFNYMGMLAVEGTYDKMEALLSQNIHPVD-- 117
              N +         +         ++EQ    + +       +  +     +   +   
Sbjct: 32  ISANELSLMTLSYKEAIHIFLPGTKNMEQVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSE 91

Query: 118 ILLMLAASEGDKPKIE---ELLRAGASYTVKDADGRTALERA 156
           ++  +AA  G    ++    LL +     V  A+   A   A
Sbjct: 92  VICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLA 133

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	173
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.6
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.6
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.59
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.56
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.56
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.54
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.51
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.48
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.47
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.42
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.4
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.4
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.4
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.37
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.36
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.36
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.36
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.36
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.33
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.28
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.26
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.26
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.24
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.23
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.23
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.19
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.18
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.17
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.14
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.08
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.07
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	98.97
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	98.96
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	98.96
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	98.95
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	98.91
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	98.73
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	98.69

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=8.1e-16  Score=109.96  Aligned_cols=73  Identities=21%  Similarity=0.312  Sum_probs=39.0

Q ss_pred             HHHcCCHHHHHHHHHCCCCC------CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhcC---chHHHHHHH
Q 030701           96 LAVEGTYDKMEALLSQNIHP------VDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAP---SEEIKDLIL  166 (173)
Q Consensus        96 Aa~~G~~~~v~~LL~~Ga~~------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~---~~ei~~lLl  166 (173)
                      ||..|++++|++|++.|+++      +.||||+|+..|+.+++++|++.|++++.+|.+|+||||+|+   +.+++++|+
T Consensus         8 A~~~G~~~~v~~Ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll   87 (130)
T d1ycsb1           8 SSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLV   87 (130)
T ss_dssp             HHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHcCCCccccccccccccccccccccccccccccccccccccccccCcccccccchhhHHHHHHHHH
Confidence            55555555555555555544      225555555555555555555555555555555555555554   244555554


Q ss_pred             hh
Q 030701          167 NF  168 (173)
Q Consensus       167 ~~  168 (173)
                      ++
T Consensus        88 ~~   89 (130)
T d1ycsb1          88 ES   89 (130)
T ss_dssp             HT
T ss_pred             Hc
Confidence            44

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.60  E-value=6.8e-16  Score=108.62  Aligned_cols=73  Identities=23%  Similarity=0.178  Sum_probs=38.2

Q ss_pred             HHHcCCHHHHHHHHHCCCCC------CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhcC---chHHHHHHH
Q 030701           96 LAVEGTYDKMEALLSQNIHP------VDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAP---SEEIKDLIL  166 (173)
Q Consensus        96 Aa~~G~~~~v~~LL~~Ga~~------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~---~~ei~~lLl  166 (173)
                      |+..|+.++|++|++.|+++      +.||||+|+..|+.+++++|++.|++++.+|.+|+||||+|+   +.+++++|+
T Consensus         9 A~~~g~~~~v~~Ll~~g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din~~d~~g~tpLh~A~~~~~~~~v~~Ll   88 (118)
T d1myoa_           9 ALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLL   88 (118)
T ss_dssp             HHHTTCHHHHHHHHTTTCCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTTCCSSSCSCHHHHHHTTTCCHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHhhhccccccccccccccccccccccccccccccccceeeecccccccchhhhhhcCchhhhhhhh
Confidence            55555555555555555544      225555555555555555555555555555555555555554   234555554


Q ss_pred             hh
Q 030701          167 NF  168 (173)
Q Consensus       167 ~~  168 (173)
                      ++
T Consensus        89 ~~   90 (118)
T d1myoa_          89 SK   90 (118)
T ss_dssp             TT
T ss_pred             cc
Confidence            43

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.59  E-value=2.6e-15  Score=110.91  Aligned_cols=78  Identities=17%  Similarity=0.180  Sum_probs=69.9

Q ss_pred             HHHHH---cCCHHHHHHHHHCCCCC------CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhcC---chHH
Q 030701           94 GMLAV---EGTYDKMEALLSQNIHP------VDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAP---SEEI  161 (173)
Q Consensus        94 ~~Aa~---~G~~~~v~~LL~~Ga~~------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~---~~ei  161 (173)
                      |+|+.   .|+.+++++|++.|+++      +.||||+|+..|+.+++++|+++|+|++.+|.+|.||||+|.   +.++
T Consensus        50 h~A~~~~~~~~~~iv~~Ll~~gadin~~d~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~i  129 (154)
T d1dcqa1          50 HLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHC  129 (154)
T ss_dssp             HHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred             HHHHHhcCCCCHHHHHHHHHcCCChhhhhhhhccccccccccccccccccccccCccccccCCCCCCHHHHHHHcCCHHH
Confidence            34886   47899999999999988      559999999999999999999999999999999999999997   4789


Q ss_pred             HHHHHhhhhc
Q 030701          162 KDLILNFSVQ  171 (173)
Q Consensus       162 ~~lLl~~~~~  171 (173)
                      +++|++....
T Consensus       130 ~~~L~~~~~~  139 (154)
T d1dcqa1         130 EELLTQALSG  139 (154)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHHHhCCC
Confidence            9999887654

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.56  E-value=3.8e-16  Score=109.92  Aligned_cols=71  Identities=35%  Similarity=0.364  Sum_probs=64.8

Q ss_pred             HHHHcCCHHHHHHHHHCCCCC------CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhcCchHHHHHH
Q 030701           95 MLAVEGTYDKMEALLSQNIHP------VDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAPSEEIKDLI  165 (173)
Q Consensus        95 ~Aa~~G~~~~v~~LL~~Ga~~------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~~~ei~~lL  165 (173)
                      +|+..|+.+++++|++.|+++      +.||||+|+..|+.+++++|+++|+|++.+|.+|.||||+|.++.+..+|
T Consensus        41 ~A~~~~~~~~~~~ll~~g~din~~d~~g~tpLh~A~~~~~~~~v~~Ll~~Gad~~~~d~~G~t~l~~a~~~~i~~LL  117 (118)
T d1myoa_          41 YAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALEATDNQAIKALL  117 (118)
T ss_dssp             HHHHHSTTTHHHHHHHSSCTTTCCSSSCSCHHHHHHTTTCCHHHHHHHTTCCCSSSSSSSTCCCCCTCSSTTTGGGG
T ss_pred             ccccccccccccccccccceeeecccccccchhhhhhcCchhhhhhhhcccccceeeCCCCCCHHHHHhHHHHHHhc
Confidence            499999999999999999987      45999999999999999999999999999999999999999776555544

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.56  E-value=5.3e-15  Score=114.17  Aligned_cols=80  Identities=21%  Similarity=0.210  Sum_probs=73.2

Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCC-------CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhcC---chHHH
Q 030701           93 MGMLAVEGTYDKMEALLSQNIHP-------VDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAP---SEEIK  162 (173)
Q Consensus        93 ~~~Aa~~G~~~~v~~LL~~Ga~~-------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~---~~ei~  162 (173)
                      +|+|+..|+.++|++|++.+++.       +.||||+|+..|+.+++++|+++|+|++.+|.+|.||||+|.   +.+++
T Consensus       162 Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gadin~~d~~g~t~L~~A~~~~~~~i~  241 (255)
T d1oy3d_         162 LHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILA  241 (255)
T ss_dssp             HHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHH
T ss_pred             ccccccccccccccchhcccccccccccccccccccccccccHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHH
Confidence            44599999999999999988776       449999999999999999999999999999999999999996   58999


Q ss_pred             HHHHhhhhcc
Q 030701          163 DLILNFSVQK  172 (173)
Q Consensus       163 ~lLl~~~~~~  172 (173)
                      ++|++++++.
T Consensus       242 ~~Ll~~Ga~~  251 (255)
T d1oy3d_         242 RLLRAHGAPE  251 (255)
T ss_dssp             HHHHHTTCCC
T ss_pred             HHHHHcCCCC
Confidence            9999998764

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=7.7e-15  Score=103.95  Aligned_cols=72  Identities=28%  Similarity=0.305  Sum_probs=63.8

Q ss_pred             HHHcCCHHHHHHHHHCCCCC------C-CcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhcC---chHHHHHH
Q 030701           96 LAVEGTYDKMEALLSQNIHP------V-DILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAP---SEEIKDLI  165 (173)
Q Consensus        96 Aa~~G~~~~v~~LL~~Ga~~------~-dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~---~~ei~~lL  165 (173)
                      +|..|+.+++++|++.|+++      + .||||+|+..|+.+++++|++.|+|++.+|.+|+||||+|.   +.+++++|
T Consensus        42 ~a~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~G~T~l~~A~~~g~~~~v~~L  121 (125)
T d1bi7b_          42 VMMMGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYL  121 (125)
T ss_dssp             SSCTTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCCHHHHHHHcCCHHHHHHH
Confidence            55689999999999999877      2 27999999999999999999999999999999999999997   47899988


Q ss_pred             Hh
Q 030701          166 LN  167 (173)
Q Consensus       166 l~  167 (173)
                      +.
T Consensus       122 ls  123 (125)
T d1bi7b_         122 RA  123 (125)
T ss_dssp             SS
T ss_pred             Hh
Confidence            75

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.51  E-value=2.1e-14  Score=112.80  Aligned_cols=78  Identities=17%  Similarity=0.141  Sum_probs=69.8

Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCCC------CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhcCchHHHHHH
Q 030701           92 YMGMLAVEGTYDKMEALLSQNIHP------VDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAPSEEIKDLI  165 (173)
Q Consensus        92 ~~~~Aa~~G~~~~v~~LL~~Ga~~------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~~~ei~~lL  165 (173)
                      ++++|+..|+.++++.|++.|+++      +.||||+|+..|+.++|++|+++|||++.+|.+|+||||+|+. +++++|
T Consensus       202 ~L~~a~~~~~~~~~~~Ll~~g~din~~~~~g~TpL~~A~~~g~~~iv~lLl~~Gadv~~~d~~G~TaL~~A~e-~~~~~L  280 (291)
T d1s70b_         202 ALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADE-DILGYL  280 (291)
T ss_dssp             HHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCCS-GGGHHH
T ss_pred             hhhHHHHcCChhhhcccccceecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHH-HHHHHH
Confidence            456799999999999999999987      4599999999999999999999999999999999999999964 677777


Q ss_pred             Hhhhh
Q 030701          166 LNFSV  170 (173)
Q Consensus       166 l~~~~  170 (173)
                      .+...
T Consensus       281 ~~~~~  285 (291)
T d1s70b_         281 EELQK  285 (291)
T ss_dssp             HHHHH
T ss_pred             HHHhh
Confidence            76544

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=4.2e-14  Score=115.26  Aligned_cols=78  Identities=24%  Similarity=0.320  Sum_probs=70.0

Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCCC------CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhcC---chHHH
Q 030701           92 YMGMLAVEGTYDKMEALLSQNIHP------VDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAP---SEEIK  162 (173)
Q Consensus        92 ~~~~Aa~~G~~~~v~~LL~~Ga~~------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~---~~ei~  162 (173)
                      +||+||..|+.++|++|++.|+++      ++||||+|+..|+.+++++|+++|++++.++.+|+||||+|+   ..++.
T Consensus         3 pL~~Aa~~g~~~~v~~Ll~~g~~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~~~~g~t~L~~A~~~g~~~~~   82 (408)
T d1n11a_           3 PLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMV   82 (408)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHHHHHHTCHHHH
T ss_pred             hHHHHHHCcCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHH
Confidence            466799999999999999999988      559999999999999999999999999999999999999987   36777


Q ss_pred             HHHHhhh
Q 030701          163 DLILNFS  169 (173)
Q Consensus       163 ~lLl~~~  169 (173)
                      ++|+...
T Consensus        83 ~~Ll~~~   89 (408)
T d1n11a_          83 KLLLENN   89 (408)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHhh
Confidence            7776543

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.47  E-value=8.1e-14  Score=105.74  Aligned_cols=78  Identities=27%  Similarity=0.259  Sum_probs=69.9

Q ss_pred             HHHHHHcCCHHHHHHHHHCCCC-C------CCcHHHHHHHcCCHHHHHHHHH-cCCCcccccCCCCchhhhcCchHHHHH
Q 030701           93 MGMLAVEGTYDKMEALLSQNIH-P------VDILLMLAASEGDKPKIEELLR-AGASYTVKDADGRTALERAPSEEIKDL  164 (173)
Q Consensus        93 ~~~Aa~~G~~~~v~~LL~~Ga~-~------~dTpLh~Aa~~g~~~~v~~LL~-~GAdi~~~d~~G~TpLh~A~~~ei~~l  164 (173)
                      ++.|+..|+.++++.|++.|.. +      +.||||+|+..|+.+++++|++ .|+|++.+|.+|+||||+|.+.+++++
T Consensus       142 l~~a~~~~~~~~~~~Ll~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad~~~~d~~g~t~l~~A~~~~~~~~  221 (229)
T d1ixva_         142 LHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQVKKF  221 (229)
T ss_dssp             HHHHHHHTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCCCTTSCCTGGGCSCHHHHHH
T ss_pred             cchhhhcccccccccccccccccccccccccCCchhhhcccccHHHHHHHHHhcCCCCCCcCCCCCCHHHHHhhHHHHHH
Confidence            3459999999999999998743 3      4599999999999999999996 699999999999999999999999999


Q ss_pred             HHhhhh
Q 030701          165 ILNFSV  170 (173)
Q Consensus       165 Ll~~~~  170 (173)
                      |++.++
T Consensus       222 Ll~~g~  227 (229)
T d1ixva_         222 FLNNVV  227 (229)
T ss_dssp             HHHHCC
T ss_pred             HHHcCC
Confidence            998764

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.42  E-value=1.3e-13  Score=106.12  Aligned_cols=74  Identities=26%  Similarity=0.261  Sum_probs=66.5

Q ss_pred             HHHHcCCHHHHHHHHHCCCCC---------CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhcC---chHHH
Q 030701           95 MLAVEGTYDKMEALLSQNIHP---------VDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAP---SEEIK  162 (173)
Q Consensus        95 ~Aa~~G~~~~v~~LL~~Ga~~---------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~---~~ei~  162 (173)
                      .||..|+.+++++||+.|+++         +.||||+|+..|+.+++++|++.|++++.+|.+|.||||+|+   ..+++
T Consensus        15 ~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~~~d~~g~tpL~~A~~~~~~~~~   94 (255)
T d1oy3d_          15 LAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCA   94 (255)
T ss_dssp             HHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHHHHTTTTCHHHH
T ss_pred             HHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhcccccccccccccccccccccccchhhhhhhccCchHHH
Confidence            499999999999999998774         449999999999999999999999999999999999999997   36777


Q ss_pred             HHHHhh
Q 030701          163 DLILNF  168 (173)
Q Consensus       163 ~lLl~~  168 (173)
                      ++|++.
T Consensus        95 ~~Ll~~  100 (255)
T d1oy3d_          95 CVLLQP  100 (255)
T ss_dssp             HHHSSS
T ss_pred             HHHHhh
Confidence            777653

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=4.1e-13  Score=95.53  Aligned_cols=77  Identities=16%  Similarity=0.096  Sum_probs=66.8

Q ss_pred             HHHHHcCCHHHHHHHHHCCCCC------CCcHHHHHHHcCCHHHHHHHHHcCCCcccccC-CCCchhhhcC-----chHH
Q 030701           94 GMLAVEGTYDKMEALLSQNIHP------VDILLMLAASEGDKPKIEELLRAGASYTVKDA-DGRTALERAP-----SEEI  161 (173)
Q Consensus        94 ~~Aa~~G~~~~v~~LL~~Ga~~------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~-~G~TpLh~A~-----~~ei  161 (173)
                      |+|+..|+.+++++|++.|+++      +.||||+|+..|+.+++++|+++|++++..+. +++||++++.     ..++
T Consensus        39 h~A~~~~~~~~~~~ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~ei  118 (130)
T d1ycsb1          39 HNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQC  118 (130)
T ss_dssp             HHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCH
T ss_pred             ccccccccccccccccccccccccccccCcccccccchhhHHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHHcChHHH
Confidence            3499999999999999999887      45999999999999999999999999998775 5889887764     2589


Q ss_pred             HHHHHhhhh
Q 030701          162 KDLILNFSV  170 (173)
Q Consensus       162 ~~lLl~~~~  170 (173)
                      +++|++...
T Consensus       119 v~~L~~~~~  127 (130)
T d1ycsb1         119 SQFLYGVQE  127 (130)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHhHHH
Confidence            999987654

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.40  E-value=5.3e-13  Score=99.76  Aligned_cols=71  Identities=24%  Similarity=0.249  Sum_probs=65.7

Q ss_pred             HHHHcCCHHHHHHHHHCCCCC------CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhcC---chHHHHHH
Q 030701           95 MLAVEGTYDKMEALLSQNIHP------VDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAP---SEEIKDLI  165 (173)
Q Consensus        95 ~Aa~~G~~~~v~~LL~~Ga~~------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~---~~ei~~lL  165 (173)
                      .++..|..++++.+++.+.++      +.||||+|+..|+.+++++|++.|+|++.+|.+|+||||+|+   +.+|+++|
T Consensus       129 ~~~~~~~~~~~~~l~~~~~~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gad~n~~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         129 WAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNFANREITDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             hhcccCcceeeeeeccccccccccccccccccchhccccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHhhc
Confidence            499999999999999999877      559999999999999999999999999999999999999997   47888886

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=7e-13  Score=101.40  Aligned_cols=73  Identities=22%  Similarity=0.247  Sum_probs=62.1

Q ss_pred             HHHHcCCHHHHHHHHHCCCCC------CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhcCc--hHHHHHHH
Q 030701           95 MLAVEGTYDKMEALLSQNIHP------VDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAPS--EEIKDLIL  166 (173)
Q Consensus        95 ~Aa~~G~~~~v~~LL~~Ga~~------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~~--~ei~~lLl  166 (173)
                      +++..|+.+.+++|++.|.++      +.||||+|+..|+.+++++|++.|||++.+|.+|+||||+|.+  .+|+++|+
T Consensus       142 ~a~~~~~~~~~~~L~~~~~~i~~~d~~g~TpL~~Aa~~g~~~~v~~LL~~Gad~~~~d~~g~tpl~~A~~~~~~i~~~Ll  221 (223)
T d1uoha_         142 RAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVAKGGLGLILKRMV  221 (223)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHCCTTHHHHHHHHH
T ss_pred             hhhhcCCcchhhhhccccceeeeccCCCCceeccccccCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCHHHHhccc
Confidence            388888888888888888776      4499999999999999999999999999999999999999974  56777776


Q ss_pred             h
Q 030701          167 N  167 (173)
Q Consensus       167 ~  167 (173)
                      +
T Consensus       222 ~  222 (223)
T d1uoha_         222 E  222 (223)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=6.9e-13  Score=107.91  Aligned_cols=76  Identities=24%  Similarity=0.228  Sum_probs=67.4

Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCC------CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhcC---chHHHH
Q 030701           93 MGMLAVEGTYDKMEALLSQNIHP------VDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAP---SEEIKD  163 (173)
Q Consensus        93 ~~~Aa~~G~~~~v~~LL~~Ga~~------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~---~~ei~~  163 (173)
                      ++.++..++.+.++.+++.|+++      +.||||+|+..|+.++|++|+++|||++.+|.+|+||||+|.   +.++++
T Consensus       301 L~~~~~~~~~~~~~~ll~~g~~in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~GAd~n~~d~~G~t~L~~A~~~~~~~iv~  380 (408)
T d1n11a_         301 LHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTD  380 (408)
T ss_dssp             HHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCHHHHHHHTTCHHHHH
T ss_pred             chhhcccCcceeeeeeccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHH
Confidence            45588899999999999999887      459999999999999999999999999999999999999996   468888


Q ss_pred             HHHhh
Q 030701          164 LILNF  168 (173)
Q Consensus       164 lLl~~  168 (173)
                      +|...
T Consensus       381 ~L~~~  385 (408)
T d1n11a_         381 VLKVV  385 (408)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            87543

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=1.3e-12  Score=99.31  Aligned_cols=78  Identities=18%  Similarity=0.194  Sum_probs=69.4

Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCCC-------CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhcC---chHH
Q 030701           92 YMGMLAVEGTYDKMEALLSQNIHP-------VDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAP---SEEI  161 (173)
Q Consensus        92 ~~~~Aa~~G~~~~v~~LL~~Ga~~-------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~---~~ei  161 (173)
                      +++.|+..|+.+.+++|+..|..+       +.||||+|+..|+.+++++|+++|+|++.+|.+|+||||+|.   +.++
T Consensus       114 ~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~~~v~~Ll~~gad~~~~~~~G~tpl~~A~~~~~~~~  193 (221)
T d1iknd_         114 CLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRI  193 (221)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHH
T ss_pred             hhhHHhhcCChhheeeecccCcccccccccCCCCccccccccccHHHHHHHHhcCCcccccCCCCCCHHHHHHHCCCHHH
Confidence            344599999999999999998765       459999999999999999999999999999999999999997   4788


Q ss_pred             HHHHHhhh
Q 030701          162 KDLILNFS  169 (173)
Q Consensus       162 ~~lLl~~~  169 (173)
                      +++|.++.
T Consensus       194 ~~~l~~~~  201 (221)
T d1iknd_         194 QQQLGQLT  201 (221)
T ss_dssp             HHHHHTTS
T ss_pred             HHHHHHcC
Confidence            88887654

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=1.6e-12  Score=95.61  Aligned_cols=74  Identities=22%  Similarity=0.273  Sum_probs=67.1

Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCC------CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhcCchHHHHHHH
Q 030701           93 MGMLAVEGTYDKMEALLSQNIHP------VDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAPSEEIKDLIL  166 (173)
Q Consensus        93 ~~~Aa~~G~~~~v~~LL~~Ga~~------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~~~ei~~lLl  166 (173)
                      ++.|+..++.++++.++..|.+.      +.||||+|+..|+.+++++|++.|+|++.+|.+|.||||+|+....+++++
T Consensus       148 l~~a~~~~~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Gad~n~~d~~G~TpL~~A~~~~~~divk  227 (228)
T d1k1aa_         148 LIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILR  227 (228)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHHHHHHT
T ss_pred             HHHHHHhhhhhhhhhhhhhccccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCccccC
Confidence            34599999999999999999876      459999999999999999999999999999999999999999877777764

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=1.4e-12  Score=94.42  Aligned_cols=73  Identities=25%  Similarity=0.322  Sum_probs=66.8

Q ss_pred             HHHHcCCHHHHHHHHHCCCCC------CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhcC---chHHHHHH
Q 030701           95 MLAVEGTYDKMEALLSQNIHP------VDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAP---SEEIKDLI  165 (173)
Q Consensus        95 ~Aa~~G~~~~v~~LL~~Ga~~------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~---~~ei~~lL  165 (173)
                      .++..++.++++.+++.|+++      +.||||+|+..|+.+++++|+ .|++++.+|.+|+||||+|+   +.+++++|
T Consensus        74 ~~~~~~~~~~~~~~l~~~~~~n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~L  152 (156)
T d1bd8a_          74 DAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDLHRRDARGLTPLELALQRGAQDLVDIL  152 (156)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHH-TTSCTTCCCTTSCCHHHHHHHSCCHHHHHHH
T ss_pred             cccccccccccccccccccccccccCCCCeeecccccccccccccccc-ccccccccCCCCCCHHHHHHHcCCHHHHHHH
Confidence            499999999999999999876      459999999999999999877 79999999999999999997   47899999


Q ss_pred             Hhh
Q 030701          166 LNF  168 (173)
Q Consensus       166 l~~  168 (173)
                      +++
T Consensus       153 l~h  155 (156)
T d1bd8a_         153 QGH  155 (156)
T ss_dssp             HTT
T ss_pred             Hhh
Confidence            876

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.36  E-value=1.2e-12  Score=93.74  Aligned_cols=72  Identities=22%  Similarity=0.295  Sum_probs=65.7

Q ss_pred             HHHHcCCHHHHHHHHHCCCCC------CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhcC---chHHHHHH
Q 030701           95 MLAVEGTYDKMEALLSQNIHP------VDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAP---SEEIKDLI  165 (173)
Q Consensus        95 ~Aa~~G~~~~v~~LL~~Ga~~------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~---~~ei~~lL  165 (173)
                      .++...+.+.+++++..|++.      +.||||+|+..|+.+++++|++.|+|++.+|.+|.||||+|+   +.+++++|
T Consensus        73 ~~~~~~~~~~~~~l~~~~~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~~~d~~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_          73 MAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             cccccccceeeecccccCCccccccccCchHHHhhhhcchhheeeeccccccCCcccCCCCCCHHHHHHHcCCHHHHHhC
Confidence            388899999999999999887      459999999999999999999999999999999999999997   47888887


Q ss_pred             H
Q 030701          166 L  166 (173)
Q Consensus       166 l  166 (173)
                      +
T Consensus       153 ~  153 (153)
T d1awcb_         153 Q  153 (153)
T ss_dssp             C
T ss_pred             c
Confidence            3

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.33  E-value=3.4e-12  Score=93.80  Aligned_cols=81  Identities=14%  Similarity=0.112  Sum_probs=70.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHCCCCC------------CCcHHHHHHH---cCCHHHHHHHHHcCCCcccccCCCC
Q 030701           86 VEQYFNYMGMLAVEGTYDKMEALLSQNIHP------------VDILLMLAAS---EGDKPKIEELLRAGASYTVKDADGR  150 (173)
Q Consensus        86 ~~~l~~~~~~Aa~~G~~~~v~~LL~~Ga~~------------~dTpLh~Aa~---~g~~~~v~~LL~~GAdi~~~d~~G~  150 (173)
                      ...++.    |+..+++..+..++..|.++            +.||||+|+.   .++.+++++|+++|+|++.+|.+|.
T Consensus         7 l~~L~~----Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~~d~~g~   82 (154)
T d1dcqa1           7 LHSLCE----AVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGS   82 (154)
T ss_dssp             HHHHHH----HHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCC
T ss_pred             HHHHHH----HHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChhhhhhhhc
Confidence            344555    99999999999999998765            3499999997   4788999999999999999999999


Q ss_pred             chhhhcC---chHHHHHHHhhhh
Q 030701          151 TALERAP---SEEIKDLILNFSV  170 (173)
Q Consensus       151 TpLh~A~---~~ei~~lLl~~~~  170 (173)
                      ||||+|+   +.+++++|+++.+
T Consensus        83 TpLh~A~~~~~~~~v~~Ll~~ga  105 (154)
T d1dcqa1          83 TALHYCCLTDNAECLKLLLRGKA  105 (154)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             cccccccccccccccccccccCc
Confidence            9999997   4789999988753

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.28  E-value=9.6e-13  Score=101.86  Aligned_cols=73  Identities=25%  Similarity=0.306  Sum_probs=62.1

Q ss_pred             HHHHHcCCHHHHHHH--------HHCCCCC------CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhcCc-
Q 030701           94 GMLAVEGTYDKMEAL--------LSQNIHP------VDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAPS-  158 (173)
Q Consensus        94 ~~Aa~~G~~~~v~~L--------L~~Ga~~------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~~-  158 (173)
                      |+||..|+.++|+.|        ++.|+++      ++||||+|+..|+.+++++|+++|+|++.+|.+|.|||++|.. 
T Consensus        38 h~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~n~~~~~g~t~l~~a~~~  117 (277)
T d2fo1e1          38 HWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAAN  117 (277)
T ss_dssp             HHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHT
T ss_pred             HHHHHcCCHHHHHHHHhcchhHHHHcCCCccccCCCCCeeeccccccccccccccccccccccccccccccccccchhhh
Confidence            349999999888766        5678887      5599999999999999999999999999999999999999863 


Q ss_pred             --hHHHHHHH
Q 030701          159 --EEIKDLIL  166 (173)
Q Consensus       159 --~ei~~lLl  166 (173)
                        .++...+.
T Consensus       118 ~~~~~~~~l~  127 (277)
T d2fo1e1         118 RDFGMMVYML  127 (277)
T ss_dssp             TCHHHHHHHT
T ss_pred             cchhhhhhhh
Confidence              34555443

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=4.5e-12  Score=90.85  Aligned_cols=76  Identities=22%  Similarity=0.326  Sum_probs=61.4

Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCCC------CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhcCc---hHHH
Q 030701           92 YMGMLAVEGTYDKMEALLSQNIHP------VDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAPS---EEIK  162 (173)
Q Consensus        92 ~~~~Aa~~G~~~~v~~LL~~Ga~~------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~~---~ei~  162 (173)
                      .||+||..|+.++|+.|++.|+++      +.||||+|+ .|+.+++++|++.|++++..+.+|.++++.+..   .++.
T Consensus         4 ~Lh~Aa~~g~~~~v~~Ll~~g~d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~~~~~~~~l~~~~~~~~~~~~   82 (156)
T d1ihba_           4 ELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTL   82 (156)
T ss_dssp             HHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCcCccCCcccccccccc-cccccccccccccccccccccccCcccccccccccccccc
Confidence            345699999999999999999888      449999875 789999999999999999999999999988862   4555


Q ss_pred             HHHHhh
Q 030701          163 DLILNF  168 (173)
Q Consensus       163 ~lLl~~  168 (173)
                      +.|..+
T Consensus        83 ~~l~~~   88 (156)
T d1ihba_          83 QTLLEF   88 (156)
T ss_dssp             HHHHHT
T ss_pred             cccccc
Confidence            555443

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=1e-11  Score=94.69  Aligned_cols=77  Identities=25%  Similarity=0.243  Sum_probs=69.5

Q ss_pred             HHHHHcCCHHHHHHHHHCCCCC------CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhcC---chHHHHH
Q 030701           94 GMLAVEGTYDKMEALLSQNIHP------VDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAP---SEEIKDL  164 (173)
Q Consensus        94 ~~Aa~~G~~~~v~~LL~~Ga~~------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~---~~ei~~l  164 (173)
                      ++|+..|+.+++++|++.|+++      +.||||+++..++.+++++|+..|++++.+|.+|.||||.|+   +.+++++
T Consensus       108 ~~A~~~~~~e~~~~Ll~~g~d~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~~~i~~~d~~g~TpL~~Aa~~g~~~~v~~  187 (223)
T d1uoha_         108 HYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKL  187 (223)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHH
T ss_pred             hHHHHcCCHHHHHHHHHCCCCCCCcCCCCCccchhhhhcCCcchhhhhccccceeeeccCCCCceeccccccCcHHHHHH
Confidence            3499999999999999999987      449999999999999999999999999999999999999997   4789999


Q ss_pred             HHhhhh
Q 030701          165 ILNFSV  170 (173)
Q Consensus       165 Ll~~~~  170 (173)
                      |+++++
T Consensus       188 LL~~Ga  193 (223)
T d1uoha_         188 LVSQGA  193 (223)
T ss_dssp             HHHTTC
T ss_pred             HHHCCC
Confidence            987653

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.24  E-value=1.2e-12  Score=107.12  Aligned_cols=50  Identities=16%  Similarity=0.145  Sum_probs=23.8

Q ss_pred             cHHHHHHHcCCHHHHHHHHHcCCCccccc--CCCCchhhhcC---chHHHHHHHh
Q 030701          118 ILLMLAASEGDKPKIEELLRAGASYTVKD--ADGRTALERAP---SEEIKDLILN  167 (173)
Q Consensus       118 TpLh~Aa~~g~~~~v~~LL~~GAdi~~~d--~~G~TpLh~A~---~~ei~~lLl~  167 (173)
                      ||||+|+..||.++|++|++.|++++..+  .+|.||||+|+   +.+++++|++
T Consensus       128 taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~  182 (346)
T d2ajaa1         128 QAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCE  182 (346)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CHHHHHHHCCCHHHHHHHHHcCCCccccccccCCCChhHHHHHHhhHHHHHHHHH
Confidence            45555555555555555555555544433  23445555544   2344444443

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.23  E-value=2.2e-11  Score=95.16  Aligned_cols=81  Identities=17%  Similarity=0.225  Sum_probs=70.5

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHCCCCC------CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhcC-
Q 030701           85 DVEQYFNYMGMLAVEGTYDKMEALLSQNIHP------VDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAP-  157 (173)
Q Consensus        85 ~~~~l~~~~~~Aa~~G~~~~v~~LL~~Ga~~------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~-  157 (173)
                      ..+.|+.    ||..|++++|++||+.|+++      +.||||+|+..|+.+++++|+++|++++..+..+.+||+.+. 
T Consensus        40 ~~t~l~~----A~~~G~~~~v~~Ll~~Gadvn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~L~~a~~  115 (291)
T d1s70b_          40 DGAVFLA----ACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAAS  115 (291)
T ss_dssp             HHHHHHH----HHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             CchHHHH----HHHcCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHhcCCceeeeeeccccccccccccccccccccccc
Confidence            4456777    99999999999999999988      449999999999999999999999999999999999999986 


Q ss_pred             --chHHHHHHHhhh
Q 030701          158 --SEEIKDLILNFS  169 (173)
Q Consensus       158 --~~ei~~lLl~~~  169 (173)
                        +.++++.|.++.
T Consensus       116 ~~~~~~~~~l~~~~  129 (291)
T d1s70b_         116 CGYLDIAEYLISQG  129 (291)
T ss_dssp             HTCHHHHHHHHHTT
T ss_pred             ccccchhhcccccC
Confidence              356777776543

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.23  E-value=8.9e-12  Score=96.25  Aligned_cols=75  Identities=25%  Similarity=0.248  Sum_probs=65.6

Q ss_pred             HHHHHHcCCHHHHHHHH-HCCCCC------CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhcC---chHHH
Q 030701           93 MGMLAVEGTYDKMEALL-SQNIHP------VDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAP---SEEIK  162 (173)
Q Consensus        93 ~~~Aa~~G~~~~v~~LL-~~Ga~~------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~---~~ei~  162 (173)
                      +++++..++.+.++.++ ..+.+.      +.||||+|+..|+.+++++|++.|+|++.+|.+|.||||+|+   +.+++
T Consensus       191 L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~gadin~~d~~G~T~L~~A~~~~~~~iv  270 (277)
T d2fo1e1         191 LHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIV  270 (277)
T ss_dssp             HHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCHHHH
T ss_pred             cccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHcCCHHHH
Confidence            45699999999998765 555554      459999999999999999999999999999999999999997   47899


Q ss_pred             HHHHh
Q 030701          163 DLILN  167 (173)
Q Consensus       163 ~lLl~  167 (173)
                      ++|++
T Consensus       271 ~lL~~  275 (277)
T d2fo1e1         271 DIFDR  275 (277)
T ss_dssp             HHHHT
T ss_pred             HHHHH
Confidence            99874

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=1.1e-11  Score=96.07  Aligned_cols=72  Identities=22%  Similarity=0.218  Sum_probs=62.9

Q ss_pred             CCHHHHHHHHHCCCCC------CCcHHHHHHHcCCHHHHHHHHH-cCCCcccccCCCCchhhhcC---chHHHHHHHhhh
Q 030701          100 GTYDKMEALLSQNIHP------VDILLMLAASEGDKPKIEELLR-AGASYTVKDADGRTALERAP---SEEIKDLILNFS  169 (173)
Q Consensus       100 G~~~~v~~LL~~Ga~~------~dTpLh~Aa~~g~~~~v~~LL~-~GAdi~~~d~~G~TpLh~A~---~~ei~~lLl~~~  169 (173)
                      +..+++++|++.|+++      +.||||+|+..|+.+++++|++ .|+|++.+|.+|.||||+|+   +.+++++|++++
T Consensus       197 ~~~~i~~~Li~~ga~~n~~~~~g~t~L~~a~~~~~~~~v~~lL~~~g~din~~d~~G~TpL~~A~~~~~~eiv~~Ll~~G  276 (285)
T d1wdya_         197 DVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRG  276 (285)
T ss_dssp             THHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHCCCCCCccCCCCCCccchhhhcCcHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence            3446788888888877      4499999999999999999997 59999999999999999997   489999999987


Q ss_pred             hc
Q 030701          170 VQ  171 (173)
Q Consensus       170 ~~  171 (173)
                      +.
T Consensus       277 Ad  278 (285)
T d1wdya_         277 AS  278 (285)
T ss_dssp             SC
T ss_pred             CC
Confidence            64

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.18  E-value=3e-11  Score=96.34  Aligned_cols=36  Identities=11%  Similarity=0.115  Sum_probs=30.5

Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCC------CCcHHHHHHHcCC
Q 030701           93 MGMLAVEGTYDKMEALLSQNIHP------VDILLMLAASEGD  128 (173)
Q Consensus        93 ~~~Aa~~G~~~~v~~LL~~Ga~~------~dTpLh~Aa~~g~  128 (173)
                      +|+||..|+.++|+.||+.|+++      +.||||.|+..++
T Consensus       111 LH~Aa~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~  152 (301)
T d1sw6a_         111 LHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVN  152 (301)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSH
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCcCCcccccHHHHhhhccc
Confidence            34599999999999999999988      4599999987553

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.17  E-value=6.4e-12  Score=102.77  Aligned_cols=78  Identities=13%  Similarity=0.106  Sum_probs=65.8

Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCCC--------CCcHHHHHHHcCCHHHHHHHHHcCCCcc---cccCCCCchhhhcC---
Q 030701           92 YMGMLAVEGTYDKMEALLSQNIHP--------VDILLMLAASEGDKPKIEELLRAGASYT---VKDADGRTALERAP---  157 (173)
Q Consensus        92 ~~~~Aa~~G~~~~v~~LL~~Ga~~--------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~---~~d~~G~TpLh~A~---  157 (173)
                      ++|+||..||.++|++|++.|+++        ++||||+|+..||.++|++|++.|++..   ..+.++.||++.|+   
T Consensus       129 aL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g  208 (346)
T d2ajaa1         129 AFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRG  208 (346)
T ss_dssp             HHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHHHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTC
T ss_pred             HHHHHHHCCCHHHHHHHHHcCCCccccccccCCCChhHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcC
Confidence            344599999999999999999987        3399999999999999999999998753   44566788888886   


Q ss_pred             chHHHHHHHhhh
Q 030701          158 SEEIKDLILNFS  169 (173)
Q Consensus       158 ~~ei~~lLl~~~  169 (173)
                      +.+++++|++..
T Consensus       209 ~~~iv~~Ll~~g  220 (346)
T d2ajaa1         209 HHNVINFLLDCP  220 (346)
T ss_dssp             CHHHHHHHTTSH
T ss_pred             HHHHHHHHHhCC
Confidence            378999998765

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.14  E-value=6.8e-11  Score=84.23  Aligned_cols=75  Identities=32%  Similarity=0.385  Sum_probs=56.9

Q ss_pred             HHHcCCHHHHHHHHHCCCCC-----CCcHHHHHH---------------------------------HcCCHHHHHHHHH
Q 030701           96 LAVEGTYDKMEALLSQNIHP-----VDILLMLAA---------------------------------SEGDKPKIEELLR  137 (173)
Q Consensus        96 Aa~~G~~~~v~~LL~~Ga~~-----~dTpLh~Aa---------------------------------~~g~~~~v~~LL~  137 (173)
                      ||..|+.++|++||+.|+++     +.||||+|+                                 ...+.++++.|+.
T Consensus         9 Aa~~g~~~~v~~LL~~ga~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   88 (153)
T d1awcb_           9 AARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLK   88 (153)
T ss_dssp             HHHHTCHHHHHHHHHHTCCCCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHT
T ss_pred             HHHCCCHHHHHHHHHcCCCcccccCCCccccccccccccccccccccccccccccccccccccccccccccceeeecccc
Confidence            77777777777777777655     335666554                                 4555567778888


Q ss_pred             cCCCcccccCCCCchhhhcC---chHHHHHHHhhhh
Q 030701          138 AGASYTVKDADGRTALERAP---SEEIKDLILNFSV  170 (173)
Q Consensus       138 ~GAdi~~~d~~G~TpLh~A~---~~ei~~lLl~~~~  170 (173)
                      .|++++.+|.+|.||||+|+   +.+++++|+++.+
T Consensus        89 ~~~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~ga  124 (153)
T d1awcb_          89 HGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGA  124 (153)
T ss_dssp             TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             cCCccccccccCchHHHhhhhcchhheeeecccccc
Confidence            89999999999999999997   4789999988754

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=2.9e-10  Score=83.14  Aligned_cols=74  Identities=23%  Similarity=0.196  Sum_probs=62.5

Q ss_pred             HHHHHHcCCHHHHHHHHH----CCCCC------CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhcCc---h
Q 030701           93 MGMLAVEGTYDKMEALLS----QNIHP------VDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAPS---E  159 (173)
Q Consensus        93 ~~~Aa~~G~~~~v~~LL~----~Ga~~------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~~---~  159 (173)
                      ||+||..|+.++++.|++    .|+++      +.||||+|+..|+.++++.|++.|++++..+..|.++++.|..   .
T Consensus         7 Lh~A~~~g~~~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~a~~~~~~   86 (228)
T d1k1aa_           7 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSP   86 (228)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHCCCCCCccCCCCCccceehhcccccccccccccccccccccccccccccccccccccc
Confidence            445999999999998874    78776      4599999999999999999999999999999999999999862   4


Q ss_pred             HHHHHHH
Q 030701          160 EIKDLIL  166 (173)
Q Consensus       160 ei~~lLl  166 (173)
                      ++.+.+.
T Consensus        87 ~~~~~~~   93 (228)
T d1k1aa_          87 TCLRALL   93 (228)
T ss_dssp             HHHHHHH
T ss_pred             cchhhhh
Confidence            4444443

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=3e-10  Score=81.00  Aligned_cols=75  Identities=27%  Similarity=0.288  Sum_probs=66.9

Q ss_pred             HHHHcCCHHHHHHHHHCCCCC------CCcHHHHHHHcCCHHHHHHHHHcCC-CcccccCCCCchhhhcC---chHHHHH
Q 030701           95 MLAVEGTYDKMEALLSQNIHP------VDILLMLAASEGDKPKIEELLRAGA-SYTVKDADGRTALERAP---SEEIKDL  164 (173)
Q Consensus        95 ~Aa~~G~~~~v~~LL~~Ga~~------~dTpLh~Aa~~g~~~~v~~LL~~GA-di~~~d~~G~TpLh~A~---~~ei~~l  164 (173)
                      .++..++.+.++.|+..+.++      +.+|||+|+..++.+++++|+++|+ +++.+|.+|.||||+|+   +.+++++
T Consensus        72 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~~~~iv~~  151 (156)
T d1ihba_          72 DAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSL  151 (156)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHH
Confidence            389999999999999988776      4499999999999999999998886 89999999999999997   4789999


Q ss_pred             HHhhh
Q 030701          165 ILNFS  169 (173)
Q Consensus       165 Ll~~~  169 (173)
                      |++++
T Consensus       152 Ll~~G  156 (156)
T d1ihba_         152 MQANG  156 (156)
T ss_dssp             HHHTC
T ss_pred             HHhcC
Confidence            98763

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=5.7e-10  Score=86.13  Aligned_cols=55  Identities=25%  Similarity=0.186  Sum_probs=49.4

Q ss_pred             HHHHHHcCCHHHHHHHHHC-CCCC------CCcHHHHHHHcCCHHHHHHHHHcCCCcccccC
Q 030701           93 MGMLAVEGTYDKMEALLSQ-NIHP------VDILLMLAASEGDKPKIEELLRAGASYTVKDA  147 (173)
Q Consensus        93 ~~~Aa~~G~~~~v~~LL~~-Ga~~------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~  147 (173)
                      +++|+..|+.+++++||+. |+++      +.||||+|+..|+.+++++|+++|||+|++|.
T Consensus       223 L~~a~~~~~~~~v~~lL~~~g~din~~d~~G~TpL~~A~~~~~~eiv~~Ll~~GAd~n~~d~  284 (285)
T d1wdya_         223 LILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGDL  284 (285)
T ss_dssp             HHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCCSSC
T ss_pred             cchhhhcCcHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcccC
Confidence            4459999999999999985 7777      45999999999999999999999999999874

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=8.4e-10  Score=79.31  Aligned_cols=71  Identities=21%  Similarity=0.208  Sum_probs=63.6

Q ss_pred             HHcCCHHHHHHHHHCCCCC------CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhcC---chHHHHHHHh
Q 030701           97 AVEGTYDKMEALLSQNIHP------VDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAP---SEEIKDLILN  167 (173)
Q Consensus        97 a~~G~~~~v~~LL~~Ga~~------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~---~~ei~~lLl~  167 (173)
                      |..|+.+++++|++.+.++      +.+|++.++..++.++++.+++.|++++.+|.+|.||||+|+   +.+++++|+.
T Consensus        43 A~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~n~~~~~~~t~L~~A~~~~~~~i~~~L~~  122 (156)
T d1bd8a_          43 MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAA  122 (156)
T ss_dssp             SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHT
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCeeeccccccccccccccccc
Confidence            3469999999999999887      449999999999999999999999999999999999999997   4788888864

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.96  E-value=1.3e-09  Score=81.91  Aligned_cols=75  Identities=23%  Similarity=0.212  Sum_probs=66.5

Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCC------CCcHHHHHHHcCCHHHHHHHHHcC-CCcccccCCCCchhhhcC---chHHH
Q 030701           93 MGMLAVEGTYDKMEALLSQNIHP------VDILLMLAASEGDKPKIEELLRAG-ASYTVKDADGRTALERAP---SEEIK  162 (173)
Q Consensus        93 ~~~Aa~~G~~~~v~~LL~~Ga~~------~dTpLh~Aa~~g~~~~v~~LL~~G-Adi~~~d~~G~TpLh~A~---~~ei~  162 (173)
                      +..++..++.++++.|+..|.+.      +.||||+|+..|+.++++.|+..| .+++.+|.+|.||||+|+   +.+++
T Consensus       109 l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~in~~d~~g~TpLh~A~~~~~~~~v  188 (229)
T d1ixva_         109 LHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAA  188 (229)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             cccccccchhhhhhhhhhhcccccccCCCCCCccchhhhcccccccccccccccccccccccccCCchhhhcccccHHHH
Confidence            34589999999999999999876      449999999999999999999887 789999999999999997   47888


Q ss_pred             HHHHh
Q 030701          163 DLILN  167 (173)
Q Consensus       163 ~lLl~  167 (173)
                      ++|++
T Consensus       189 ~~Ll~  193 (229)
T d1ixva_         189 VLLVE  193 (229)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88774

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.95  E-value=2e-09  Score=79.72  Aligned_cols=53  Identities=25%  Similarity=0.179  Sum_probs=48.9

Q ss_pred             cHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhcC---chHHHHHHHhhhh
Q 030701          118 ILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAP---SEEIKDLILNFSV  170 (173)
Q Consensus       118 TpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~---~~ei~~lLl~~~~  170 (173)
                      |||++++..+..+++..|+..+++++..|..|.||||+|+   +.+++++|+++++
T Consensus       125 t~l~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga  180 (209)
T d1ot8a_         125 TALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNFA  180 (209)
T ss_dssp             BHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             CcchhhcccCcceeeeeeccccccccccccccccccchhccccHHHHHHHHHHCCC
Confidence            7999999999999999999999999999999999999987   4789999988764

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=1.2e-10  Score=88.06  Aligned_cols=73  Identities=22%  Similarity=0.287  Sum_probs=43.8

Q ss_pred             HHHcCCHHHHHHHHHCCCCC------CCcHHHHHHHcCCHHHHHHHHHcCCCccc------ccCCCCchhhhcCc---hH
Q 030701           96 LAVEGTYDKMEALLSQNIHP------VDILLMLAASEGDKPKIEELLRAGASYTV------KDADGRTALERAPS---EE  160 (173)
Q Consensus        96 Aa~~G~~~~v~~LL~~Ga~~------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~------~d~~G~TpLh~A~~---~e  160 (173)
                      |+..|+.+++++|++.|+++      +.||||+++..++.++++.|+..+.+...      ...+|.||||.|+.   .+
T Consensus        46 A~~~~~~~iv~~L~~~g~d~~~~d~~g~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~  125 (221)
T d1iknd_          46 AVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLG  125 (221)
T ss_dssp             HHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccchhhhhcccccccccccccccccchhhhHHhhcCChh
Confidence            77777777777777776665      33677777777777777766666544322      23346677776652   34


Q ss_pred             HHHHHHhh
Q 030701          161 IKDLILNF  168 (173)
Q Consensus       161 i~~lLl~~  168 (173)
                      ++.+|...
T Consensus       126 ~~~~l~~~  133 (221)
T d1iknd_         126 IVELLVSL  133 (221)
T ss_dssp             HHHHHHHH
T ss_pred             heeeeccc
Confidence            55554443

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.73  E-value=5.8e-09  Score=72.82  Aligned_cols=78  Identities=18%  Similarity=0.192  Sum_probs=68.1

Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCCC------CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCC-chhhhcC---chHH
Q 030701           92 YMGMLAVEGTYDKMEALLSQNIHP------VDILLMLAASEGDKPKIEELLRAGASYTVKDADGR-TALERAP---SEEI  161 (173)
Q Consensus        92 ~~~~Aa~~G~~~~v~~LL~~Ga~~------~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~-TpLh~A~---~~ei  161 (173)
                      ++|+||..|++++|++|++.|+++      +.||||+|+ .|+.+++++|++.|++++.++..+. ||||+|+   +.++
T Consensus         6 ~L~~Aa~~G~~~~v~~Ll~~gad~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~~~~~~~~~~L~~A~~~g~~~~   84 (125)
T d1bi7b_           6 WLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDT   84 (125)
T ss_dssp             HHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHHTCHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHcCCccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccc
Confidence            456699999999999999999988      449999765 7999999999999999999999876 6999997   4789


Q ss_pred             HHHHHhhhh
Q 030701          162 KDLILNFSV  170 (173)
Q Consensus       162 ~~lLl~~~~  170 (173)
                      +++|+++.+
T Consensus        85 v~~Ll~~ga   93 (125)
T d1bi7b_          85 LVVLHRAGA   93 (125)
T ss_dssp             HHHHHHHTC
T ss_pred             ccccccccc
Confidence            999988753

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.69  E-value=1.1e-08  Score=81.14  Aligned_cols=42  Identities=19%  Similarity=0.211  Sum_probs=40.3

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCchhhhcC
Q 030701          116 VDILLMLAASEGDKPKIEELLRAGASYTVKDADGRTALERAP  157 (173)
Q Consensus       116 ~dTpLh~Aa~~g~~~~v~~LL~~GAdi~~~d~~G~TpLh~A~  157 (173)
                      ++||||+|+..|+.++|++|++.|||++.+|..|+||||.|+
T Consensus       107 G~T~LH~Aa~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~  148 (301)
T d1sw6a_         107 GNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAV  148 (301)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHCCCCCCcCCcccccHHHHhh
Confidence            559999999999999999999999999999999999999986