Citrus Sinensis ID: 030739

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170--
Protein Sequence
MAFTSIYDLLADISFTFSVQTNVDKDQVKAAIKAQQDQQIDNALLAEGRFYSDLELTEKEIECMVMEVSRAEYLAGDNLKQQLGHKESSTSGAEPSSSGARSSCSETKLEGGKGCELSDTVLSNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLETGSSSRRKGKATE
Secondary Structure (PSIPRED)
ccHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcHHHHHHHHHHHHHcccccHHHHHHHHccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHcHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEEccccccccccccc
Coil and Loop (DISEMBL)
MAFTSIYDLLADISFTFSVQTNVDKDQVKAAIKAQQDQQIDNALLaegrfysdlelTEKEIECMVMEVSRAeylagdnlkqqlghkesstsgaepsssgarsscsetkleggkgcelsdTVLSNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLEtgsssrrkgkate
Flexible Loop (DISEMBL)
MAFTSIYDLLADISFTFSVQTNVDKDQVKAAIKAQQDQQIDNALLAEGRFYSDLELTEKEIECMVMEVSRAEYLAGDNLKQQLGHKesstsgaepsssgarsSCSETKLEGGKGCELSDTVLSNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLletgsssrrkgkate
Low Complexity Region (SEG)
MAFTSIYDLLADISFTFSVQTNvdkdqvkaaikaqqdqqidNALLAEGRFYSDLELTEKEIECMVMEVSRAEYLAGDNLKQQLGHKesstsgaepsssgaRSSCSETKLEGGKGCELSDTVLSNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLETGSSSRRKGKATE
Disordered region (IsUnstruct)
**FTSIYDLLADISFTFSVQTNVDKDQVKAAIKAQQDQQIDNALLAEGRFYSDLELTEKEIECMVMEVSRAEYLA********************************************TVLSNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLE*************
Disordered Region (DISOPRED)
**FTSIYDLLADISFTFSVQT*V****************IDNALLAEGRFYSDLELTEKEIECMVMEVSRAEY***************************************************SMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLE*************
Disordered Region (DISEMBL)
MAFTSIYDLLADISFTFSVQTNVDKDQVKAAIKAQQDQQIDNALLAEGRFYSDLELTEKEIECMVMEVSRAEYLAGDNLKQ********************************GCELSDTVLSNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLETG***********
Disordered Region (DISPRO)
*AFTSIYDLLADISFTFSVQTNVDKDQVKAAIKAQQDQQIDNALLAEGRFYSDLELTEKEIECMVMEVSRAEYLAGDNLKQQL*************************************VLSNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLET************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAFTSIYDLLADISFTFSVQTNVDKDQVKAAIKAQQDQQIDNALLAEGRFYSDLELTEKEIECMVMEVSRAEYLAGDNLKQQLGHKESSTSGAEPSSSGARSSCSETKLEGGKGCELSDTVLSNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLETGSSSRRKGKATE
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	172
296084879	502	unnamed protein product [Vitis vinifera]	0.941	0.322	0.810	1e-64
225464886	528	PREDICTED: uncharacterized protein LOC10	0.941	0.306	0.810	1e-64
255565701	534	expressed protein, putative [Ricinus com	0.941	0.303	0.845	3e-64
147860016	244	hypothetical protein VITISV_021902 [Viti	0.941	0.663	0.786	4e-63
224104891	534	predicted protein [Populus trichocarpa]	0.941	0.303	0.785	3e-58
356542770	519	PREDICTED: uncharacterized protein LOC10	0.924	0.306	0.736	8e-54
356539236	520	PREDICTED: uncharacterized protein LOC10	0.924	0.305	0.730	1e-53
357453181	253	OTU domain-containing protein [Medicago	0.924	0.628	0.783	1e-52
224132278	289	predicted protein [Populus trichocarpa]	0.941	0.560	0.746	8e-52
449492795	542	PREDICTED: uncharacterized LOC101208627	0.930	0.295	0.722	3e-51

>gi|296084879|emb|CBI28288.3| unnamed protein product [Vitis vinifera]

 Score =  251 bits (640), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 133/164 (81%), Positives = 140/164 (85%), Gaps = 2/164 (1%)

Query: 11  ADISFTFSVQTNVDKDQVKAAIKAQQDQQIDNALLAEGRFYSDLELTEKEIECMVMEVSR 70
           A + F+     NVDKDQVKAAIKAQQDQQIDNALLAEGRFYSDLELTEKEIE MVME SR
Sbjct: 339 AGLGFSSLRGVNVDKDQVKAAIKAQQDQQIDNALLAEGRFYSDLELTEKEIERMVMEASR 398

Query: 71  AEYLAGDNLKQQLGHKE-SSTSGAEPSSSGARSSCSETKLEGGKGCE-LSDTVLSNSMQM 128
           AEYLA D  K QLG +E SSTSGAEPSSSGAR S SETKLEGG+    L DTVLS+SMQM
Sbjct: 399 AEYLADDKFKSQLGCRESSSTSGAEPSSSGARPSGSETKLEGGREQHGLPDTVLSSSMQM 458

Query: 129 VLSMGFSYLQVIEAYSIFGDDVDSMVCYLLETGSSSRRKGKATE 172
           VLSMGFSYLQVIEAYSIFGDD +SM CYL+ETGSSSRRKGKATE
Sbjct: 459 VLSMGFSYLQVIEAYSIFGDDAESMACYLVETGSSSRRKGKATE 502

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225464886|ref|XP_002273209.1| PREDICTED: uncharacterized protein LOC100246727 [Vitis vinifera]

 Score =  250 bits (639), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 133/164 (81%), Positives = 140/164 (85%), Gaps = 2/164 (1%)

Query: 11  ADISFTFSVQTNVDKDQVKAAIKAQQDQQIDNALLAEGRFYSDLELTEKEIECMVMEVSR 70
           A + F+     NVDKDQVKAAIKAQQDQQIDNALLAEGRFYSDLELTEKEIE MVME SR
Sbjct: 365 AGLGFSSLRGVNVDKDQVKAAIKAQQDQQIDNALLAEGRFYSDLELTEKEIERMVMEASR 424

Query: 71  AEYLAGDNLKQQLGHKE-SSTSGAEPSSSGARSSCSETKLEGGKGCE-LSDTVLSNSMQM 128
           AEYLA D  K QLG +E SSTSGAEPSSSGAR S SETKLEGG+    L DTVLS+SMQM
Sbjct: 425 AEYLADDKFKSQLGCRESSSTSGAEPSSSGARPSGSETKLEGGREQHGLPDTVLSSSMQM 484

Query: 129 VLSMGFSYLQVIEAYSIFGDDVDSMVCYLLETGSSSRRKGKATE 172
           VLSMGFSYLQVIEAYSIFGDD +SM CYL+ETGSSSRRKGKATE
Sbjct: 485 VLSMGFSYLQVIEAYSIFGDDAESMACYLVETGSSSRRKGKATE 528

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255565701|ref|XP_002523840.1| expressed protein, putative [Ricinus communis] gi|223536928|gb|EEF38566.1| expressed protein, putative [Ricinus communis]

 Score =  249 bits (635), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 137/162 (84%), Positives = 142/162 (87%)

Query: 11  ADISFTFSVQTNVDKDQVKAAIKAQQDQQIDNALLAEGRFYSDLELTEKEIECMVMEVSR 70
           A + F+    TNVDKDQVKAAIKAQQDQQIDNALLAEGRFYSDLELTEKEIE MVME SR
Sbjct: 373 AGLGFSCLRGTNVDKDQVKAAIKAQQDQQIDNALLAEGRFYSDLELTEKEIERMVMEASR 432

Query: 71  AEYLAGDNLKQQLGHKESSTSGAEPSSSGARSSCSETKLEGGKGCELSDTVLSNSMQMVL 130
           AEYLA D  KQQL HKESSTSGAEPSSSGARSS SETK+EG +   L DTVLS+SMQMVL
Sbjct: 433 AEYLANDKFKQQLCHKESSTSGAEPSSSGARSSDSETKVEGTRTNSLQDTVLSSSMQMVL 492

Query: 131 SMGFSYLQVIEAYSIFGDDVDSMVCYLLETGSSSRRKGKATE 172
           SMGFSYLQ IEAYSIFGDDVDSMVCYLLET SSSRRKGKATE
Sbjct: 493 SMGFSYLQAIEAYSIFGDDVDSMVCYLLETASSSRRKGKATE 534

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147860016|emb|CAN81048.1| hypothetical protein VITISV_021902 [Vitis vinifera]

 Score =  245 bits (626), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 133/169 (78%), Positives = 140/169 (82%), Gaps = 7/169 (4%)

Query: 11  ADISFTFSVQTNVDKDQVKAAIKAQQDQQIDNA-----LLAEGRFYSDLELTEKEIECMV 65
           A + F+     NVDKDQVKAAIKAQQDQQIDNA     LLAEGRFYSDLELTEKEIE MV
Sbjct: 76  AGLGFSSLRGVNVDKDQVKAAIKAQQDQQIDNASTYIALLAEGRFYSDLELTEKEIERMV 135

Query: 66  MEVSRAEYLAGDNLKQQLGHKESS-TSGAEPSSSGARSSCSETKLEGGKGCE-LSDTVLS 123
           ME SRAEYLA D  K QLG +ESS TSGAEPSSSGAR S SETKLEGG+    L DTVLS
Sbjct: 136 MEASRAEYLADDKFKSQLGCRESSSTSGAEPSSSGARPSGSETKLEGGREQHGLPDTVLS 195

Query: 124 NSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLETGSSSRRKGKATE 172
           +SMQMVLSMGFSYLQVIEAYSIFGDD +SM CYL+ETGSSSRRKGKATE
Sbjct: 196 SSMQMVLSMGFSYLQVIEAYSIFGDDAESMACYLVETGSSSRRKGKATE 244

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224104891|ref|XP_002313608.1| predicted protein [Populus trichocarpa] gi|222850016|gb|EEE87563.1| predicted protein [Populus trichocarpa]

 Score =  229 bits (584), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 128/163 (78%), Positives = 140/163 (85%), Gaps = 1/163 (0%)

Query: 11  ADISFTFSVQTNVDKDQVKAAIKAQQDQQIDNALLAEGRFYSDLELTEKEIECMVMEVSR 70
           A + F+     +VD+DQ+KAAIKAQQDQQI+NALLAEGRFYSDLELTEKEIE MVME SR
Sbjct: 372 AGLGFSCLQGASVDRDQIKAAIKAQQDQQINNALLAEGRFYSDLELTEKEIERMVMEASR 431

Query: 71  AEYLAGDNLKQQLGHKESSTSGAEPSSSGARSSCSET-KLEGGKGCELSDTVLSNSMQMV 129
           AEYLA +  K QLG KESST+GAEPSSS ARSS SET K++G +     DTVLS+SMQMV
Sbjct: 432 AEYLADNKFKPQLGRKESSTAGAEPSSSSARSSASETSKVDGVREHGSQDTVLSSSMQMV 491

Query: 130 LSMGFSYLQVIEAYSIFGDDVDSMVCYLLETGSSSRRKGKATE 172
           LSMGFSYLQVIEAYSIFGDDVDSMVCYLLETGSSSRRKGKATE
Sbjct: 492 LSMGFSYLQVIEAYSIFGDDVDSMVCYLLETGSSSRRKGKATE 534

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356542770|ref|XP_003539838.1| PREDICTED: uncharacterized protein LOC100809162 [Glycine max]

 Score =  214 bits (546), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 120/163 (73%), Positives = 132/163 (80%), Gaps = 4/163 (2%)

Query: 11  ADISFTFSVQTNVDKDQVKAAIKAQQDQQIDNALLAEGRFYSDLELTEKEIECMVMEVSR 70
           A + F+    TNVDKDQVKAAIKAQQD+QI+NALLAEGRFYSDLELTEKEIE MV+EVSR
Sbjct: 360 AGLGFSSLRGTNVDKDQVKAAIKAQQDKQINNALLAEGRFYSDLELTEKEIERMVIEVSR 419

Query: 71  AEYLAGDNLKQQLGHKESSTSGAEP-SSSGARSSCSETKLEGGKGCELSDTVLSNSMQMV 129
           AEYLA    KQQLG +ESSTS AEP SS    SS ++ K E GK      + LS+ MQM+
Sbjct: 420 AEYLADSTFKQQLGDRESSTSNAEPSSSGATGSSGTDRKTEHGK---EHGSDLSSGMQML 476

Query: 130 LSMGFSYLQVIEAYSIFGDDVDSMVCYLLETGSSSRRKGKATE 172
           LSMGFSY+Q IEAYSIFGDDVDSMVCYLLETGSSSRRKGKATE
Sbjct: 477 LSMGFSYMQAIEAYSIFGDDVDSMVCYLLETGSSSRRKGKATE 519

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356539236|ref|XP_003538105.1| PREDICTED: uncharacterized protein LOC100780250 [Glycine max]

 Score =  214 bits (544), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 119/163 (73%), Positives = 133/163 (81%), Gaps = 4/163 (2%)

Query: 11  ADISFTFSVQTNVDKDQVKAAIKAQQDQQIDNALLAEGRFYSDLELTEKEIECMVMEVSR 70
           A + F+    TNVDKD+VKAAIKAQQDQQI+NALLAEGRFYSDLELTEKEIE MV+EVSR
Sbjct: 361 AGLGFSSLRGTNVDKDKVKAAIKAQQDQQINNALLAEGRFYSDLELTEKEIERMVIEVSR 420

Query: 71  AEYLAGDNLKQQLGHKESSTSGAEP-SSSGARSSCSETKLEGGKGCELSDTVLSNSMQMV 129
           AEYLA    KQQLG++ESSTS AEP SS    SS ++ K E G+      + LS+ MQM+
Sbjct: 421 AEYLADSAFKQQLGNRESSTSNAEPSSSGATGSSGTDRKTEHGR---EHGSDLSSGMQML 477

Query: 130 LSMGFSYLQVIEAYSIFGDDVDSMVCYLLETGSSSRRKGKATE 172
           LSMGFSY+Q IEAYSIFGDDVDSMVCYLLETGSSSRRKGKATE
Sbjct: 478 LSMGFSYMQAIEAYSIFGDDVDSMVCYLLETGSSSRRKGKATE 520

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357453181|ref|XP_003596867.1| OTU domain-containing protein [Medicago truncatula] gi|355485915|gb|AES67118.1| OTU domain-containing protein [Medicago truncatula]

 Score =  211 bits (536), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 127/162 (78%), Positives = 140/162 (86%), Gaps = 3/162 (1%)

Query: 11  ADISFTFSVQTNVDKDQVKAAIKAQQDQQIDNALLAEGRFYSDLELTEKEIECMVMEVSR 70
           A + F+    TNVDKDQVKAAIK+QQDQQIDNALLAEGRFYSDLELTEKEIE  VME SR
Sbjct: 95  AGLGFSSLRGTNVDKDQVKAAIKSQQDQQIDNALLAEGRFYSDLELTEKEIELAVMEASR 154

Query: 71  AEYLAGDNLKQQLGHKESSTSGAEPSSSGARSSCSETKLEGGKGCELSDTVLSNSMQMVL 130
           AEYLAG   KQQLG++ESSTS AEPSSSGARSS S+ K+E GKG   +++ LS+SM M+L
Sbjct: 155 AEYLAGGTFKQQLGNRESSTSTAEPSSSGARSSGSDPKMESGKG---NNSNLSSSMNMLL 211

Query: 131 SMGFSYLQVIEAYSIFGDDVDSMVCYLLETGSSSRRKGKATE 172
           SMGFSYLQ IEAYSIFGDDVDSM+CYLLETGSSSRRKGKATE
Sbjct: 212 SMGFSYLQAIEAYSIFGDDVDSMICYLLETGSSSRRKGKATE 253

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224132278|ref|XP_002328229.1| predicted protein [Populus trichocarpa] gi|222837744|gb|EEE76109.1| predicted protein [Populus trichocarpa]

 Score =  208 bits (529), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 124/166 (74%), Positives = 137/166 (82%), Gaps = 4/166 (2%)

Query: 11  ADISFTFSVQTNVDKDQVKAAIKAQQDQQIDNALLAEGRFYSDLELTEKEIECMVMEVSR 70
           A + F+     +VD+DQVKAAIKAQQDQQIDNALLAEG+FYSDLE+TEKEIE MVME SR
Sbjct: 124 AGLGFSCLQGASVDRDQVKAAIKAQQDQQIDNALLAEGQFYSDLEVTEKEIERMVMEASR 183

Query: 71  AEYLAGDNLKQQLGHKESSTSGAEPSSSGARSSCSE--TKLEGGKGCELSDTVLSNSMQM 128
           AEYLA +  K QLG K SSTSGAEPSSSGARSS +   TK+EG +     DTVLS+SMQ+
Sbjct: 184 AEYLADNKFKPQLGRKGSSTSGAEPSSSGARSSSASETTKVEGAREHGSQDTVLSSSMQI 243

Query: 129 VLSMGFSYLQVIEAYSIFGDDVDSMVCYLLET--GSSSRRKGKATE 172
           VLSMGFSYLQ IEAYSIFGDDVDSMVCYL+ET   SSSRRKGKATE
Sbjct: 244 VLSMGFSYLQAIEAYSIFGDDVDSMVCYLVETSSSSSSRRKGKATE 289

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449492795|ref|XP_004159103.1| PREDICTED: uncharacterized LOC101208627 [Cucumis sativus]

 Score =  206 bits (524), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 117/162 (72%), Positives = 136/162 (83%), Gaps = 2/162 (1%)

Query: 11  ADISFTFSVQTNVDKDQVKAAIKAQQDQQIDNALLAEGRFYSDLELTEKEIECMVMEVSR 70
           A + F+     NVDKD+VKAA+KAQQDQQ+DNALLA+GR++SDLE+TEKEIE MVME SR
Sbjct: 383 AGLGFSSLRGANVDKDKVKAALKAQQDQQLDNALLAQGRYFSDLEVTEKEIEQMVMEASR 442

Query: 71  AEYLAGDNLKQQLGHKESSTSGAEPSSSGARSSCSETKLEGGKGCELSDTVLSNSMQMVL 130
           AEYLA  +LKQQL  +++STSGAEPSSSGARSS SE   +   G  + ++VLSN M+ VL
Sbjct: 443 AEYLAKYSLKQQLDRRDNSTSGAEPSSSGARSSGSEGNCKRESG--VQESVLSNGMRTVL 500

Query: 131 SMGFSYLQVIEAYSIFGDDVDSMVCYLLETGSSSRRKGKATE 172
           SMGFSYLQVIEAYSIFG+DVDSMVCYLLETG SSRRKGKATE
Sbjct: 501 SMGFSYLQVIEAYSIFGEDVDSMVCYLLETGDSSRRKGKATE 542

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	172
TAIR|locus:2039642	506	OTLD1 "otubain-like deubiquiti	0.732	0.249	0.6	1.6e-30

TAIR|locus:2039642 OTLD1 "otubain-like deubiquitinase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 338 (124.0 bits), Expect = 1.6e-30, P = 1.6e-30
 Identities = 81/135 (60%), Positives = 93/135 (68%)

Query:    42 NALLAEGRFYSDLELTEKEIECMVMEVSRAEYLAGDNLKQQLGHKXXXXXXXXXXXXXXR 101
             NALLAEGRFYSDLELTEKEIE  VME SRAEYL  +  K ++G K               
Sbjct:   377 NALLAEGRFYSDLELTEKEIERSVMEASRAEYLM-EWSKPRIGPKESSTSNAETSSSGAT 435

Query:   102 S-SCSETK-LEGGKGCELSDTVLSNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLE 159
               S S++K  E  K      TVLS+S++MVLSMGFSY Q +EAYSIFGDDVDSMVCY+LE
Sbjct:   436 GPSGSDSKPAEAVK----EKTVLSSSIEMVLSMGFSYAQAMEAYSIFGDDVDSMVCYVLE 491

Query:   160 T--GSSSRRKGKATE 172
             T  G ++RRKGKATE
Sbjct:   492 TSCGGNNRRKGKATE 506


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.130   0.356    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      172       139   0.00091  102 3  11 22  0.44    31
                                                     30  0.46    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  505 (54 KB)
  Total size of DFA:  110 KB (2076 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  10.77u 0.23s 11.00t   Elapsed:  00:00:01
  Total cpu time:  10.77u 0.23s 11.00t   Elapsed:  00:00:01
  Start:  Thu May  9 18:37:11 2013   End:  Thu May  9 18:37:12 2013

GO:0005634 "nucleus" evidence=ISM

GO:0008234 "cysteine-type peptidase activity" evidence=ISS

GO:0003682 "chromatin binding" evidence=IDA

GO:0016578 "histone deubiquitination" evidence=IDA

GO:0031491 "nucleosome binding" evidence=IDA

GO:0042393 "histone binding" evidence=IDA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEP

GO:0007346 "regulation of mitotic cell cycle" evidence=RCA

GO:0009630 "gravitropism" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00037311001 SubName- Full=Chromosome undetermined scaffold_87, whole genome shotgun sequence; (502 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	172
cd00194	38	UBA Ubiquitin Associated domain. The UBA domain is	96.49
PF00627	37	UBA: UBA/TS-N domain; InterPro: IPR000449 UBA doma	95.94
smart00165	37	UBA Ubiquitin associated domain. Present in Rad23,	95.23

>cd00194 UBA Ubiquitin Associated domain

Probab=96.49  E-value=0.0025  Score=38.12  Aligned_cols=37  Identities=30%  Similarity=0.470  Sum_probs=33.4

Q ss_pred             chhhHHHHHhchhHHHHHHHhhhhccCccchhhhhhh
Q 030739          123 SNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLE  159 (172)
Q Consensus       123 sssm~mlLsMGFsY~qv~EAysIFgddvdsMvcYllE  159 (172)
                      ...++-|.+|||+.-++++|....+.|++.-+-||++
T Consensus         2 ~~~v~~L~~mGf~~~~~~~AL~~~~~d~~~A~~~L~~   38 (38)
T cd00194           2 EEKLEQLLEMGFSREEARKALRATNNNVERAVEWLLE   38 (38)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHhC
Confidence            3568899999999999999999999999999988874

The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been suggested that UBA domains are involved in conferring protein target specificity. The domain, a compact three helix bundle, has a conserved GFP-loop and the proline is thought to be critical for binding. The UBA domain is distinct from the conserved three helical domain seen in the N-terminus of EF-TS and eukaryotic NAC proteins.

>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []

Probab=95.94  E-value=0.0077  Score=36.66  Aligned_cols=34  Identities=32%  Similarity=0.446  Sum_probs=29.9

Q ss_pred             hhhHHHHHhchhHHHHHHHhhhhccCccchhhhh
Q 030739          124 NSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYL  157 (172)
Q Consensus       124 ssm~mlLsMGFsY~qv~EAysIFgddvdsMvcYl  157 (172)
                      ..++.|..|||++-++.+|.-..+.|||.-+-||
T Consensus         4 ~~v~~L~~mGf~~~~~~~AL~~~~~nve~A~~~L   37 (37)
T PF00627_consen    4 EKVQQLMEMGFSREQAREALRACNGNVERAVDWL   37 (37)
T ss_dssp             HHHHHHHHHTS-HHHHHHHHHHTTTSHHHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHhC
Confidence            4578999999999999999999999999888776

The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....

>smart00165 UBA Ubiquitin associated domain

Probab=95.23  E-value=0.018  Score=34.27  Aligned_cols=35  Identities=29%  Similarity=0.483  Sum_probs=31.6

Q ss_pred             hhhHHHHHhchhHHHHHHHhhhhccCccchhhhhh
Q 030739          124 NSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLL  158 (172)
Q Consensus       124 ssm~mlLsMGFsY~qv~EAysIFgddvdsMvcYll  158 (172)
                      ..++.|.+|||+.-++.+|...-+.|++.-+-||+
T Consensus         3 ~~v~~L~~mGf~~~~a~~aL~~~~~d~~~A~~~L~   37 (37)
T smart00165        3 EKIDQLLEMGFSREEALKALRAANGNVERAAEYLL   37 (37)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHC
Confidence            46789999999999999999999999998888774

Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	172
1vg5_A	73	RSGI RUH-014, rhomboid family protein; UBA domain,	97.0
2g3q_A	43	Protein YBL047C; endocytosis, solution structure,	96.34
2jy5_A	52	Ubiquilin-1; UBA, alternative splicing, cytoplasm,	96.23
2ooa_A	52	E3 ubiquitin-protein ligase CBL-B; alpha-helical d	96.01
1ify_A	49	HHR23A, UV excision repair protein RAD23 homolog A	95.93
2dak_A	63	Ubiquitin carboxyl-terminal hydrolase 5; isopeptid	95.83
2knz_A	53	Ubiquilin-4; cytoplasm, endoplasmic reticulum, nuc	95.65
2ekk_A	47	UBA domain from E3 ubiquitin-protein ligase HUWE1;	95.46
2cpw_A	64	CBL-interacting protein STS-1 variant; ubiquitin a	95.42
1wji_A	63	Tudor domain containing protein 3; UBA domain, str	95.39
1veg_A	83	NEDD8 ultimate buster-1; ubiquitin associated doma	95.06
1vej_A	74	Riken cDNA 4931431F19; UBA domain, three helix bun	95.02
2d9s_A	53	CBL E3 ubiquitin protein ligase; UBA domain, dimer	94.91
1wiv_A	73	UBP14, ubiquitin-specific protease 14; ubiquitin a	94.73
1dv0_A	47	DNA repair protein HHR23A; helical bundle, DNA bin	94.67
2crn_A	64	Ubash3A protein; compact three-helix bundle, struc	94.53
2dag_A	74	Ubiquitin carboxyl-terminal hydrolase 5; isopeptid	94.52
2juj_A	56	E3 ubiquitin-protein ligase CBL; alpha helix, UBA	94.39
1vek_A	84	UBP14, ubiquitin-specific protease 14, putative; U	94.26
1whc_A	64	RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain	94.22
1z96_A	40	DNA-damage, UBA-domain protein MUD1; ubiquitin, th	94.19
2dkl_A	85	Trinucleotide repeat containing 6C protein; TNRC6C	94.03
4ae4_A	118	Ubiquitin-associated protein 1; protein transport,	94.0
1wgn_A	63	UBAP1, ubiquitin associated protein; ubiquitin ass	93.61
2dai_A	83	Ubadc1, ubiquitin associated domain containing 1;	93.41
2oo9_A	46	E3 ubiquitin-protein ligase CBL; alpha-helical dom	93.41
2lbc_A	126	Ubiquitin carboxyl-terminal hydrolase 13; tandem U	92.43
2dah_A	54	Ubiquilin-3; UBA domain, structural genomics, NPPS	91.4
2bwb_A	46	Ubiquitin-like protein DSK2; UBA, signaling protei	91.3
1wr1_B	58	Ubiquitin-like protein DSK2; UBA domain, UBA-ubiqu	91.05
1oqy_A	368	HHR23A, UV excision repair protein RAD23 homolog A	87.56
2lbc_A	126	Ubiquitin carboxyl-terminal hydrolase 13; tandem U	86.88
4ae4_A	118	Ubiquitin-associated protein 1; protein transport,	82.09

>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1

Probab=97.00  E-value=0.00089  Score=46.80  Aligned_cols=41  Identities=27%  Similarity=0.318  Sum_probs=37.4

Q ss_pred             ccccchhhHHHHHhchhHHHHHHHhhhhccCccchhhhhhh
Q 030739          119 DTVLSNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLE  159 (172)
Q Consensus       119 ~~~lsssm~mlLsMGFsY~qv~EAysIFgddvdsMvcYllE  159 (172)
                      .......++.|..|||+--+|+.|+...+.|||.-+-||++
T Consensus        26 ~~~~ee~I~~L~eMGF~r~~a~~AL~~~~~nve~Ave~Ll~   66 (73)
T 1vg5_A           26 VAASEEQIQKLVAMGFDRTQVEVALAAADDDLTVAVEILMS   66 (73)
T ss_dssp             SCCCHHHHHHHHTTTCCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred             CcccHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence            33466789999999999999999999999999999999997

>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1

Probab=96.34  E-value=0.002  Score=39.35  Aligned_cols=36  Identities=19%  Similarity=0.302  Sum_probs=33.8

Q ss_pred             hhhHHHHHhchhHHHHHHHhhhhccCccchhhhhhh
Q 030739          124 NSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLE  159 (172)
Q Consensus       124 ssm~mlLsMGFsY~qv~EAysIFgddvdsMvcYllE  159 (172)
                      ..++.|.+|||+--+++.|+...+.|++.-+-||++
T Consensus         6 ~~i~~L~~MGF~~~~a~~AL~~~~~n~e~A~~~L~~   41 (43)
T 2g3q_A            6 LAVEELSGMGFTEEEAHNALEKCNWDLEAATNFLLD   41 (43)
T ss_dssp             HHHHHHHTTTSCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHhCcCHHHHHHHHHc
Confidence            568999999999999999999999999999999986

>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B

Probab=96.23  E-value=0.0039  Score=40.28  Aligned_cols=42  Identities=19%  Similarity=0.358  Sum_probs=37.2

Q ss_pred             CccccchhhHHHHHhch-hHHHHHHHhhhhccCccchhhhhhh
Q 030739          118 SDTVLSNSMQMVLSMGF-SYLQVIEAYSIFGDDVDSMVCYLLE  159 (172)
Q Consensus       118 ~~~~lsssm~mlLsMGF-sY~qv~EAysIFgddvdsMvcYllE  159 (172)
                      |.......++.|..||| +--+++.|...-+-||+.-+-||+.
T Consensus         8 p~~~~~~~l~~L~~MGF~~~~~~~~AL~~t~gn~e~A~e~L~~   50 (52)
T 2jy5_A            8 PEVRFQQQLEQLSAMGFLNREANLQALIATGGDINAAIERLLG   50 (52)
T ss_dssp             TTTTTHHHHHHHHHTTCCCHHHHHHHHHHHTTCHHHHHHHHTT
T ss_pred             chhHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence            44556778999999999 9999999999999999999999975

>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A

Probab=96.01  E-value=0.0035  Score=42.57  Aligned_cols=40  Identities=18%  Similarity=0.293  Sum_probs=35.2

Q ss_pred             ccchhhHHHHHhchhHHHHHHHhhhhccCccchhhhhhhc
Q 030739          121 VLSNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLET  160 (172)
Q Consensus       121 ~lsssm~mlLsMGFsY~qv~EAysIFgddvdsMvcYllEt  160 (172)
                      ...+.+..|.+|||+.-+|+.|-.|...|||----.|+|-
T Consensus        10 ~~~~~Ia~Lm~mGFsr~~ai~AL~~a~nnve~AaniLlef   49 (52)
T 2ooa_A           10 NVDAKIAKLMGEGYAFEEVKRALEIAQNNVEVARSILREF   49 (52)
T ss_dssp             -CHHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence            4457999999999999999999999999999777788874

>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=95.93  E-value=0.0046  Score=39.41  Aligned_cols=39  Identities=23%  Similarity=0.332  Sum_probs=36.0

Q ss_pred             ccchhhHHHHHhchhHHHHHHHhhhhccCccchhhhhhh
Q 030739          121 VLSNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLE  159 (172)
Q Consensus       121 ~lsssm~mlLsMGFsY~qv~EAysIFgddvdsMvcYllE  159 (172)
                      .....++.|.+|||+--+++.|....+-|||.-+-||++
T Consensus         7 ~~~~~i~~L~~MGF~~~~a~~AL~~~~~n~e~A~e~L~~   45 (49)
T 1ify_A            7 EYETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLT   45 (49)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHTTTSCSHHHHHHHHH
T ss_pred             cCHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence            345678999999999999999999999999999999997

>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.83  E-value=0.0075  Score=39.84  Aligned_cols=40  Identities=20%  Similarity=0.355  Sum_probs=36.0

Q ss_pred             ccchhhHHHHHhchhHHHHHHHhhhhccCccchhhhhhhc
Q 030739          121 VLSNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLET  160 (172)
Q Consensus       121 ~lsssm~mlLsMGFsY~qv~EAysIFgddvdsMvcYllEt  160 (172)
                      +-...++.|..|||+--+++.|....+-||+.-+-||++-
T Consensus         8 ~~~~~v~~L~~MGF~~~~a~~AL~~t~~nve~A~e~L~~~   47 (63)
T 2dak_A            8 PPEDCVTTIVSMGFSRDQALKALRATNNSLERAVDWIFSH   47 (63)
T ss_dssp             CCHHHHHHHHHHTCCHHHHHHHHHHTTSCSHHHHHHHHHH
T ss_pred             CCHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence            3456789999999999999999999999999999999973

>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}

Probab=95.65  E-value=0.0063  Score=39.32  Aligned_cols=43  Identities=21%  Similarity=0.352  Sum_probs=37.9

Q ss_pred             ccccchhhHHHHHhch-hHHHHHHHhhhhccCccchhhhhhhcC
Q 030739          119 DTVLSNSMQMVLSMGF-SYLQVIEAYSIFGDDVDSMVCYLLETG  161 (172)
Q Consensus       119 ~~~lsssm~mlLsMGF-sY~qv~EAysIFgddvdsMvcYllEtg  161 (172)
                      .......++.|..||| +--+++.|...-+-||+.-+-||++-+
T Consensus         8 e~~~~~~l~~L~~MGF~~~~~~~~AL~~t~gnve~Ave~L~~~~   51 (53)
T 2knz_A            8 EVRFQQQLEQLNSMGFINREANLQALIATGGDINAAIERLLGSQ   51 (53)
T ss_dssp             HHHHHHHHHHHHTTTCCCHHHHHHHHHHHTSCHHHHHHHHHHCC
T ss_pred             hhHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHHcC
Confidence            3445677999999999 999999999999999999999999844

>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.46  E-value=0.0098  Score=37.07  Aligned_cols=37  Identities=24%  Similarity=0.380  Sum_probs=33.6

Q ss_pred             cchhhHHHHHhchhHHHHHHHhhhhccCccchhhhhhh
Q 030739          122 LSNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLE  159 (172)
Q Consensus       122 lsssm~mlLsMGFsY~qv~EAysIFgddvdsMvcYllE  159 (172)
                      -...++.|++|||+--++..|+..-| ||+.-+-||++
T Consensus         9 ~~~~v~~L~~MGF~~~~a~~AL~~~~-n~e~A~~~L~~   45 (47)
T 2ekk_A            9 NQQQLQQLMDMGFTREHAMEALLNTS-TMEQATEYLLT   45 (47)
T ss_dssp             CHHHHHHHHHHHCCHHHHHHHHHHSC-SHHHHHHHHHT
T ss_pred             CHHHHHHHHHcCCCHHHHHHHHHHcC-CHHHHHHHHHc
Confidence            35678999999999999999999998 99999999986

>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=95.42  E-value=0.019  Score=38.44  Aligned_cols=38  Identities=24%  Similarity=0.444  Sum_probs=34.7

Q ss_pred             chhhHHHHHhchhHHHHHHHhhhhcc-Cccchhhhhhhc
Q 030739          123 SNSMQMVLSMGFSYLQVIEAYSIFGD-DVDSMVCYLLET  160 (172)
Q Consensus       123 sssm~mlLsMGFsY~qv~EAysIFgd-dvdsMvcYllEt  160 (172)
                      ...++.|+.|||+--+++.|+..-+. ||+.-+-||++-
T Consensus        20 e~~i~~L~~MGF~~~~a~~AL~~t~~~nve~A~ewL~~~   58 (64)
T 2cpw_A           20 GSALDVLLSMGFPRARAQKALASTGGRSVQTACDWLFSH   58 (64)
T ss_dssp             CCHHHHHHHHTCCHHHHHHHHHHTTTSCHHHHHHHHHSC
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHcCCCCHHHHHHHHHhC
Confidence            45699999999999999999999986 999999999973

>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=95.39  E-value=0.008  Score=40.39  Aligned_cols=38  Identities=21%  Similarity=0.341  Sum_probs=35.3

Q ss_pred             chhhHHHHHhchhHHHHHHHhhhhccCccchhhhhhhc
Q 030739          123 SNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLET  160 (172)
Q Consensus       123 sssm~mlLsMGFsY~qv~EAysIFgddvdsMvcYllEt  160 (172)
                      ...++.|..|||+--+++.|+...+.||+.-+-||++-
T Consensus        10 ~~~I~~L~~MGF~~~~a~~AL~~~~~nve~A~e~L~~~   47 (63)
T 1wji_A           10 EKALKHITEMGFSKEASRQALMDNGNNLEAALNVLLTS   47 (63)
T ss_dssp             HHHHHHHHTTTCCHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence            46789999999999999999999999999999999974

>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1

Probab=95.06  E-value=0.04  Score=39.47  Aligned_cols=39  Identities=23%  Similarity=0.349  Sum_probs=36.2

Q ss_pred             cchhhHHHHHhchhHHHHHHHhhhhccCccchhhhhhhc
Q 030739          122 LSNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLET  160 (172)
Q Consensus       122 lsssm~mlLsMGFsY~qv~EAysIFgddvdsMvcYllEt  160 (172)
                      -...++.|+.|||+--+|+.|....+.||+--+-||+.-
T Consensus        29 ~ee~I~~Lv~MGF~~~~A~~AL~~t~gdve~A~e~L~sh   67 (83)
T 1veg_A           29 SQESINQLVYMGFDTVVAEAALRVFGGNVQLAAQTLAHH   67 (83)
T ss_dssp             CHHHHHHHHHHSCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence            456899999999999999999999999999999999974

>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1

Probab=95.02  E-value=0.042  Score=38.53  Aligned_cols=40  Identities=15%  Similarity=0.247  Sum_probs=35.4

Q ss_pred             cccchhhHHHHHhchh-HHHHHHHhhhhccCccchhhhhhh
Q 030739          120 TVLSNSMQMVLSMGFS-YLQVIEAYSIFGDDVDSMVCYLLE  159 (172)
Q Consensus       120 ~~lsssm~mlLsMGFs-Y~qv~EAysIFgddvdsMvcYllE  159 (172)
                      ......++.|..|||+ .-+++.|...-+-||+.-|-||+.
T Consensus        27 ~~ye~qi~qL~eMGF~dr~~~~~AL~~t~Gnve~Ave~L~~   67 (74)
T 1vej_A           27 GRYQQELEELKALGFANRDANLQALVATDGDIHAAIEMLLG   67 (74)
T ss_dssp             TTSHHHHHHHHHHTCCCHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHHHh
Confidence            3456789999999994 788899999999999999999997

>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=94.91  E-value=0.017  Score=39.29  Aligned_cols=42  Identities=24%  Similarity=0.375  Sum_probs=37.1

Q ss_pred             ccchhhHHHHHhchhHHHHHHHhhhhccCccchhhhhhhcCC
Q 030739          121 VLSNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLETGS  162 (172)
Q Consensus       121 ~lsssm~mlLsMGFsY~qv~EAysIFgddvdsMvcYllEtg~  162 (172)
                      ..++.+..|.+|||+.-+|+-|-.|...|||--.-.|+|-.+
T Consensus         8 ~~e~~I~~L~~lGF~r~~ai~AL~~a~nnve~Aa~iL~ef~~   49 (53)
T 2d9s_A            8 QLSSEIERLMSQGYSYQDIQKALVIAHNNIEMAKNILREFSG   49 (53)
T ss_dssp             CSHHHHHHHHHHTCCHHHHHHHHHHTTTCHHHHHHHHHHHTS
T ss_pred             chHHHHHHHHHcCCCHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence            456679999999999999999999999999987778888653

>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1

Probab=94.73  E-value=0.018  Score=39.58  Aligned_cols=40  Identities=20%  Similarity=0.342  Sum_probs=36.6

Q ss_pred             ccchhhHHHHHhchhHHHHHHHhhhhccCccchhhhhhhc
Q 030739          121 VLSNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLET  160 (172)
Q Consensus       121 ~lsssm~mlLsMGFsY~qv~EAysIFgddvdsMvcYllEt  160 (172)
                      +-...++.|..|||+--++..|+..-+-||+.-+-||++-
T Consensus        28 ~~~~~v~~L~~MGF~~~~a~~AL~~t~~nve~Ave~L~~~   67 (73)
T 1wiv_A           28 IDQSSVDTLLSFGFAEDVARKALKASGGDIEKATDWVFNN   67 (73)
T ss_dssp             SCHHHHHHHHHHTCCHHHHHHHHHHTTSCHHHHHHHHHHS
T ss_pred             CCHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence            4566799999999999999999999999999999999973

>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A

Probab=94.67  E-value=0.0079  Score=38.29  Aligned_cols=36  Identities=22%  Similarity=0.386  Sum_probs=33.2

Q ss_pred             hhhHHHHHhchhHHHHHHHhhhhccCccchhhhhhh
Q 030739          124 NSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLE  159 (172)
Q Consensus       124 ssm~mlLsMGFsY~qv~EAysIFgddvdsMvcYllE  159 (172)
                      ..++.|.+|||+--+|++||.--|-|++.-+-||++
T Consensus         6 eaI~rL~~mGF~~~~a~~Al~a~~~n~e~A~~~Lf~   41 (47)
T 1dv0_A            6 EAIERLKALGFPESLVIQAYFACEKNENLAANFLLS   41 (47)
T ss_dssp             HHHTTTTTTTCCHHHHHHHHTTTTSCHHHHHHHTTS
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence            357889999999999999999999999999999986

>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=94.53  E-value=0.026  Score=37.98  Aligned_cols=39  Identities=18%  Similarity=0.390  Sum_probs=35.1

Q ss_pred             cchhhHHHHHhchhHHHHHHHhhhhcc-Cccchhhhhhhc
Q 030739          122 LSNSMQMVLSMGFSYLQVIEAYSIFGD-DVDSMVCYLLET  160 (172)
Q Consensus       122 lsssm~mlLsMGFsY~qv~EAysIFgd-dvdsMvcYllEt  160 (172)
                      ....++.|++|||+--++..|...-|. ||+.-+-||++-
T Consensus         9 ~e~~v~~L~~MGF~~~~a~~AL~~t~n~~~e~A~~wL~~h   48 (64)
T 2crn_A            9 SPSLLEPLLAMGFPVHTALKALAATGRKTAEEALAWLHDH   48 (64)
T ss_dssp             SCSSHHHHHHTSCCHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHcCCCHHHHHHHHHHhCCCCHHHHHHHHHhC
Confidence            445789999999999999999999876 999999999985

>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.52  E-value=0.021  Score=39.26  Aligned_cols=40  Identities=13%  Similarity=0.260  Sum_probs=35.6

Q ss_pred             ccchhhHHHHHhchhHHHHHHHhhhhcc-Cccchhhhhhhc
Q 030739          121 VLSNSMQMVLSMGFSYLQVIEAYSIFGD-DVDSMVCYLLET  160 (172)
Q Consensus       121 ~lsssm~mlLsMGFsY~qv~EAysIFgd-dvdsMvcYllEt  160 (172)
                      +-...++.|+.|||+--++..|+..-+. ||+.-+-||++-
T Consensus         8 ~~e~~v~~L~~MGF~~~~a~~AL~~t~n~~ve~A~ewL~~~   48 (74)
T 2dag_A            8 LDESVIIQLVEMGFPMDACRKAVYYTGNSGAEAAMNWVMSH   48 (74)
T ss_dssp             SCHHHHHHHHHHSCCHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHcCCCHHHHHHHHHHhCCCCHHHHHHHHHhC
Confidence            3456789999999999999999999985 899999999984

>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}

Probab=94.39  E-value=0.035  Score=38.33  Aligned_cols=45  Identities=24%  Similarity=0.327  Sum_probs=39.0

Q ss_pred             ccccchhhHHHHHhchhHHHHHHHhhhhccCccchhhhhhhcCCc
Q 030739          119 DTVLSNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLETGSS  163 (172)
Q Consensus       119 ~~~lsssm~mlLsMGFsY~qv~EAysIFgddvdsMvcYllEtg~s  163 (172)
                      +..+.+.+..|.+||||.-.|+.|-.|=..||+----.|+|-.+-
T Consensus         4 ~~p~e~~Ia~L~smGfsr~da~~AL~ia~Ndv~~AtNiLlEf~~~   48 (56)
T 2juj_A            4 SPQLSSEIENLMSQGYSYQDIQKALVIAQNNIEMAKNILREFVSI   48 (56)
T ss_dssp             CHHHHHHHHHHHTTTCCHHHHHHHHHHTTTCSHHHHHHHHHSCCC
T ss_pred             CCCChHHHHHHHHcCCCHHHHHHHHHHhcccHHHHHHHHHHHHcc
Confidence            445677999999999999999999999999999777788997653

>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1

Probab=94.26  E-value=0.025  Score=39.79  Aligned_cols=39  Identities=26%  Similarity=0.313  Sum_probs=34.4

Q ss_pred             cchhhHHHHHhchhHHHHHHHhhhhc-cCccchhhhhhhc
Q 030739          122 LSNSMQMVLSMGFSYLQVIEAYSIFG-DDVDSMVCYLLET  160 (172)
Q Consensus       122 lsssm~mlLsMGFsY~qv~EAysIFg-ddvdsMvcYllEt  160 (172)
                      -...++.|++|||+--+++.|...-+ -||+.-+-||++-
T Consensus        29 ~e~~v~~L~~MGF~~~~a~~AL~~t~n~n~e~A~ewL~~h   68 (84)
T 1vek_A           29 NEEIVAQLVSMGFSQLHCQKAAINTSNAGVEEAMNWLLSH   68 (84)
T ss_dssp             CHHHHHHHHHHTCCHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHcCCCHHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence            45678999999999999999988776 5999999999984

>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1

Probab=94.22  E-value=0.035  Score=37.04  Aligned_cols=38  Identities=18%  Similarity=0.440  Sum_probs=34.4

Q ss_pred             chhhHHHHHhchhHHHHHHHhhhhc-cCccchhhhhhhc
Q 030739          123 SNSMQMVLSMGFSYLQVIEAYSIFG-DDVDSMVCYLLET  160 (172)
Q Consensus       123 sssm~mlLsMGFsY~qv~EAysIFg-ddvdsMvcYllEt  160 (172)
                      ...++.|++|||+--++..|+..-| .||+.-+-||++-
T Consensus        10 ~~~v~~L~~MGF~~~~a~~AL~~t~~~nve~A~ewLl~~   48 (64)
T 1whc_A           10 LTALESLIEMGFPRGRAEKALALTGNQGIEAAMDWLMEH   48 (64)
T ss_dssp             CCHHHHHHTTTCCHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHhcCCCHHHHHHHHHhC
Confidence            4578999999999999999999995 8999999999984

>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1

Probab=94.19  E-value=0.027  Score=33.07  Aligned_cols=36  Identities=28%  Similarity=0.502  Sum_probs=31.7

Q ss_pred             chhhHHHHHhchhHHHHHHHhhhhccCccchhhhhh
Q 030739          123 SNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLL  158 (172)
Q Consensus       123 sssm~mlLsMGFsY~qv~EAysIFgddvdsMvcYll  158 (172)
                      ...++.|.+|||+--+++.|+...+-||+.-+-||+
T Consensus         5 ~~~i~~L~~mGf~~~~a~~AL~~~~~n~e~A~~~L~   40 (40)
T 1z96_A            5 NSKIAQLVSMGFDPLEAAQALDAANGDLDVAASFLL   40 (40)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHC
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHC
Confidence            346899999999999999999999999998887774

>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=94.03  E-value=0.039  Score=39.18  Aligned_cols=38  Identities=26%  Similarity=0.294  Sum_probs=35.4

Q ss_pred             chhhHHHHHhchhHHHHHHHhhhhccCccchhhhhhhc
Q 030739          123 SNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLET  160 (172)
Q Consensus       123 sssm~mlLsMGFsY~qv~EAysIFgddvdsMvcYllEt  160 (172)
                      ...++.|+.|||+--+++.|+...+-|++.-+-||++-
T Consensus        22 ~~~I~qL~~MGF~~~~a~~AL~~~n~n~e~A~ewL~~h   59 (85)
T 2dkl_A           22 SRLIKQLTDMGFPREPAEEALKSNNMNLDQAMSALLEK   59 (85)
T ss_dssp             HHHHHHHHHHTCCHHHHHHHHHHTTSCHHHHHHHHHTT
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHHC
Confidence            66789999999999999999999999999999999985

>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*

Probab=94.00  E-value=0.029  Score=41.68  Aligned_cols=37  Identities=27%  Similarity=0.589  Sum_probs=33.5

Q ss_pred             hhhHHHHHhchhHHHHHHHhhhhccCccchhhhhhhc
Q 030739          124 NSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLET  160 (172)
Q Consensus       124 ssm~mlLsMGFsY~qv~EAysIFgddvdsMvcYllEt  160 (172)
                      .-++.|++|||+.-++.=|.--.|.|++..+-||++-
T Consensus        10 ~~v~~l~~MGFp~~~~~kAl~~~g~~~e~amewL~~h   46 (118)
T 4ae4_A           10 QCVETVVNMGYSYECVLRAMKAAGANIEQILDYLFAH   46 (118)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHCcCHHHHHHHHHHh
Confidence            3478999999999999999999999999999999874

>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=93.61  E-value=0.036  Score=38.93  Aligned_cols=37  Identities=27%  Similarity=0.595  Sum_probs=33.7

Q ss_pred             hhhHHHHHhchhHHHHHHHhhhhccCccchhhhhhhc
Q 030739          124 NSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLET  160 (172)
Q Consensus       124 ssm~mlLsMGFsY~qv~EAysIFgddvdsMvcYllEt  160 (172)
                      ..+.+|.+|||++=|++=|---=|.||+.-+-||.--
T Consensus        21 e~V~~LvsMGFs~~qA~kALKat~~NvErAaDWLFSH   57 (63)
T 1wgn_A           21 QCVETVVNMGYSYECVLRAMKKKGENIEQILDYLFAH   57 (63)
T ss_dssp             HHHHHHHHHHCCHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence            4589999999999999999999999999999998754

>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=93.41  E-value=0.045  Score=38.58  Aligned_cols=40  Identities=20%  Similarity=0.273  Sum_probs=35.9

Q ss_pred             ccchhhHHHHHhchhHHHHHHHhhhhccCccchhhhhhhc
Q 030739          121 VLSNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLET  160 (172)
Q Consensus       121 ~lsssm~mlLsMGFsY~qv~EAysIFgddvdsMvcYllEt  160 (172)
                      +-...++.|+.|||+--++..|+..-+.||+.-+-||++-
T Consensus        28 ~~e~~i~~L~~MGF~~~~a~~AL~~t~~nve~A~ewL~~~   67 (83)
T 2dai_A           28 VDEAALRQLTEMGFPENRATKALQLNHMSVPQAMEWLIEH   67 (83)
T ss_dssp             CCHHHHHHHHHHTCCHHHHHHHHHHTTSCHHHHHHHHHHG
T ss_pred             CCHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence            3456789999999999999999999999999999999984

>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}

Probab=93.41  E-value=0.049  Score=36.30  Aligned_cols=42  Identities=24%  Similarity=0.384  Sum_probs=35.9

Q ss_pred             cccchhhHHHHHhchhHHHHHHHhhhhccCccchhhhhhhcC
Q 030739          120 TVLSNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLETG  161 (172)
Q Consensus       120 ~~lsssm~mlLsMGFsY~qv~EAysIFgddvdsMvcYllEtg  161 (172)
                      ..|++.+.+|.||||++=.|+-|-.|=..||+-----|+|-.
T Consensus         2 ~~~e~~I~~L~s~Gf~~~~~~rAL~ia~Nnie~A~nIL~ef~   43 (46)
T 2oo9_A            2 SQLSSEIENLMSQGYSYQDIQKALVIAQNNIEMAKNILREFA   43 (46)
T ss_dssp             CHHHHHHHHHHHTTBCHHHHHHHHHHTTTCHHHHHHHHHHHC
T ss_pred             cchHHHHHHHHHcCCCHHHHHHHHHHhhccHHHHHHHHHHhc
Confidence            468899999999999999999999999999986555666654

>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}

Probab=92.43  E-value=0.074  Score=38.49  Aligned_cols=40  Identities=18%  Similarity=0.334  Sum_probs=36.2

Q ss_pred             ccchhhHHHHHhchhHHHHHHHhhhhccCccchhhhhhhc
Q 030739          121 VLSNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLET  160 (172)
Q Consensus       121 ~lsssm~mlLsMGFsY~qv~EAysIFgddvdsMvcYllEt  160 (172)
                      +....++.|.+|||+--++..|+...+.|++.-+-||+..
T Consensus        77 ~~e~~v~~L~~MGF~~~~a~~AL~~~~~~~e~A~e~L~~~  116 (126)
T 2lbc_A           77 PPEEIVAIITSMGFQRNQAIQALRATNNNLERALDWIFSH  116 (126)
T ss_dssp             CCHHHHHHHHHHTSCHHHHHHHHHHHTSCHHHHHHHHHTC
T ss_pred             cCHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence            4556799999999999999999999999999999999873

>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=91.40  E-value=0.12  Score=33.77  Aligned_cols=42  Identities=26%  Similarity=0.329  Sum_probs=35.8

Q ss_pred             ccchhhHHHHHhchhHHH-HHHHhhhhccCccchhhhhhhcCC
Q 030739          121 VLSNSMQMVLSMGFSYLQ-VIEAYSIFGDDVDSMVCYLLETGS  162 (172)
Q Consensus       121 ~lsssm~mlLsMGFsY~q-v~EAysIFgddvdsMvcYllEtg~  162 (172)
                      ...+.++.|..|||+--+ ++.|...-+-||+.-|-||+.-+.
T Consensus         8 ~~~~~l~~L~~MGF~d~~~n~~AL~~~~Gdv~~Ave~L~~~~~   50 (54)
T 2dah_A            8 HFQVQLEQLRSMGFLNREANLQALIATGGDVDAAVEKLRQSSG   50 (54)
T ss_dssp             SSHHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHHHSC
T ss_pred             hHHHHHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence            345689999999996655 699999999999999999998653

>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A

Probab=91.30  E-value=0.076  Score=33.63  Aligned_cols=40  Identities=20%  Similarity=0.289  Sum_probs=34.2

Q ss_pred             cccchhhHHHHHhchh-HHHHHHHhhhhccCccchhhhhhh
Q 030739          120 TVLSNSMQMVLSMGFS-YLQVIEAYSIFGDDVDSMVCYLLE  159 (172)
Q Consensus       120 ~~lsssm~mlLsMGFs-Y~qv~EAysIFgddvdsMvcYllE  159 (172)
                      ....+.++.|..|||+ --+++.|...-+-||+.-|-||+.
T Consensus         5 ~~~~~~i~~L~~MGF~d~~~~~~AL~~~~gnv~~Ave~L~~   45 (46)
T 2bwb_A            5 ERYEHQLRQLNDMGFFDFDRNVAALRRSGGSVQGALDSLLN   45 (46)
T ss_dssp             HHTHHHHHHHHHTTCCCHHHHHHHHHHHTTCHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHHHc
Confidence            3456789999999996 566899999999999999999974

>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1

Probab=91.05  E-value=0.12  Score=34.50  Aligned_cols=41  Identities=20%  Similarity=0.304  Sum_probs=35.5

Q ss_pred             ccccchhhHHHHHhchh-HHHHHHHhhhhccCccchhhhhhh
Q 030739          119 DTVLSNSMQMVLSMGFS-YLQVIEAYSIFGDDVDSMVCYLLE  159 (172)
Q Consensus       119 ~~~lsssm~mlLsMGFs-Y~qv~EAysIFgddvdsMvcYllE  159 (172)
                      .....+.++.|..|||+ --+++.|...-+-||+.-|-||+.
T Consensus        14 e~~~~~qi~~L~~MGF~d~~~~~~AL~~~~gnve~Ave~L~~   55 (58)
T 1wr1_B           14 EERYEHQLRQLNDMGFFDFDRNVAALRRSGGSVQGALDSLLN   55 (58)
T ss_dssp             HHHTHHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHHHh
Confidence            34567789999999996 667799999999999999999986

>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A

Probab=87.56  E-value=0.73  Score=39.47  Aligned_cols=39  Identities=23%  Similarity=0.332  Sum_probs=35.1

Q ss_pred             ccchhhHHHHHhchhHHHHHHHhhhhccCccchhhhhhh
Q 030739          121 VLSNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLE  159 (172)
Q Consensus       121 ~lsssm~mlLsMGFsY~qv~EAysIFgddvdsMvcYllE  159 (172)
                      .....++.|++|||+.-+|.-|-..-+.|+|.-|-||+.
T Consensus       167 ~~~~~i~~l~~MGf~~~~~~~AL~a~~nn~~~A~e~L~~  205 (368)
T 1oqy_A          167 EYETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLT  205 (368)
T ss_dssp             THHHHHHHHHTTTCCSHHHHHHHHHSCSSTTHHHHTTTT
T ss_pred             chHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence            455679999999999999999999888899999999974

>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}

Probab=86.88  E-value=0.26  Score=35.58  Aligned_cols=38  Identities=16%  Similarity=0.280  Sum_probs=33.9

Q ss_pred             chhhHHHHHhchhHHHHHHHhhhhcc-Cccchhhhhhhc
Q 030739          123 SNSMQMVLSMGFSYLQVIEAYSIFGD-DVDSMVCYLLET  160 (172)
Q Consensus       123 sssm~mlLsMGFsY~qv~EAysIFgd-dvdsMvcYllEt  160 (172)
                      ...++.|++|||+--++-+|.-.-|. ||+.-+.||++-
T Consensus         4 ~~~l~~L~~MGF~~~~a~~AL~~t~n~~~e~A~~wL~~~   42 (126)
T 2lbc_A            4 ESSVMQLAEMGFPLEACRKAVYFTGNMGAEVAFNWIIVH   42 (126)
T ss_dssp             THHHHHHHTTSSCCHHHHHHHHHHTSCCHHHHHHHHHHG
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHcCCCCHHHHHHHHHHh
Confidence            35678999999999999999999976 999999999884

>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*

Probab=82.09  E-value=0.8  Score=33.84  Aligned_cols=38  Identities=21%  Similarity=0.313  Sum_probs=34.8

Q ss_pred             cchhhHHHHHhchhHHHHHHHhhhhccCccchhhhhhh
Q 030739          122 LSNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLE  159 (172)
Q Consensus       122 lsssm~mlLsMGFsY~qv~EAysIFgddvdsMvcYllE  159 (172)
                      -...+.+|..|||+-=++-+|--..+.|+|.-+=||+=
T Consensus        76 ~~~~v~~L~eMGF~~~~a~~AL~~~~nd~erAlewL~~  113 (118)
T 4ae4_A           76 FLQLMSKFKEMGFELKDIKEVLLLHNNDQDNALEDLMA  113 (118)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             CHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence            34689999999999999999999999999999999873

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	172
d1vg5a_	73	Rhomboid family protein At3g58460 {Thale cress (Ar	97.87
d1wgna_	63	Ubiquitin-associated protein 1, UBAP1 {Human (Homo	95.8
d1wiva_	73	Ubiquitin isopeptidase T {Thale cress (Arabidopsis	95.64
d2cpwa1	51	Cbl-interacting protein p70, STS1 {Human (Homo sap	95.53
d1wjia_	63	Tudor domain containing protein 3, TDRD3 {Human (H	95.29
d1oqya1	41	DNA repair protein Hhr23a {Human (Homo sapiens) [T	95.1
d2crna1	51	Suppressor of T-cell receptor signaling 2 (STS-2)	93.55
d1veka_	84	Ubiquitin isopeptidase T {Thale cress (Arabidopsis	92.8
d1whca_	64	UBA/UBX 33.3 kDa protein {Mouse (Mus musculus) [Ta	88.42

>d1vg5a_ a.5.2.1 (A:) Rhomboid family protein At3g58460 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Rhomboid family protein At3g58460
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.87  E-value=1e-05  Score=54.59  Aligned_cols=40  Identities=28%  Similarity=0.345  Sum_probs=37.3

Q ss_pred             ccchhhHHHHHhchhHHHHHHHhhhhccCccchhhhhhhc
Q 030739          121 VLSNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLET  160 (172)
Q Consensus       121 ~lsssm~mlLsMGFsY~qv~EAysIFgddvdsMvcYllEt  160 (172)
                      +-...++.|..|||++-+++.|+-.++.||+..+.|||+-
T Consensus        28 ~~ee~i~~L~~MGF~~~~a~~AL~~~~~n~e~A~~~Ll~~   67 (73)
T d1vg5a_          28 ASEEQIQKLVAMGFDRTQVEVALAAADDDLTVAVEILMSQ   67 (73)
T ss_dssp             CCHHHHHHHHTTTCCHHHHHHHHHHHTSCHHHHHHHHHTC
T ss_pred             cCHHHHHHHHHhCCCHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence            3467899999999999999999999999999999999986

>d1wgna_ a.5.2.1 (A:) Ubiquitin-associated protein 1, UBAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquitin-associated protein 1, UBAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.80  E-value=0.0021  Score=41.99  Aligned_cols=38  Identities=26%  Similarity=0.578  Sum_probs=35.3

Q ss_pred             chhhHHHHHhchhHHHHHHHhhhhccCccchhhhhhhc
Q 030739          123 SNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLET  160 (172)
Q Consensus       123 sssm~mlLsMGFsY~qv~EAysIFgddvdsMvcYllEt  160 (172)
                      ...|+.|..|||++-++++|+-.-+.||+--+-||++-
T Consensus        20 e~~v~~L~~MGF~~~~a~~AL~~~~~n~e~A~~~Lls~   57 (63)
T d1wgna_          20 RQCVETVVNMGYSYECVLRAMKKKGENIEQILDYLFAH   57 (63)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence            45799999999999999999999999999999999984

>d1wiva_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquitin isopeptidase T
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.64  E-value=0.011  Score=39.33  Aligned_cols=40  Identities=20%  Similarity=0.342  Sum_probs=36.5

Q ss_pred             ccchhhHHHHHhchhHHHHHHHhhhhccCccchhhhhhhc
Q 030739          121 VLSNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLET  160 (172)
Q Consensus       121 ~lsssm~mlLsMGFsY~qv~EAysIFgddvdsMvcYllEt  160 (172)
                      +-...++.|.+|||+--++++|+-.=+.||+.-+-||++-
T Consensus        28 ~d~~~i~~L~~MGF~~~~a~~AL~~~~~n~e~Av~~Lls~   67 (73)
T d1wiva_          28 IDQSSVDTLLSFGFAEDVARKALKASGGDIEKATDWVFNN   67 (73)
T ss_dssp             SCHHHHHHHHHHTCCHHHHHHHHHHTTSCHHHHHHHHHHS
T ss_pred             CCHHHHHHHHhcCCCHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence            3456799999999999999999999999999999999984

>d2cpwa1 a.5.2.1 (A:8-58) Cbl-interacting protein p70, STS1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Cbl-interacting protein p70, STS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.53  E-value=0.0052  Score=38.93  Aligned_cols=38  Identities=24%  Similarity=0.430  Sum_probs=33.9

Q ss_pred             cchhhHHHHHhchhHHHHHHHhhhhcc-Cccchhhhhhh
Q 030739          122 LSNSMQMVLSMGFSYLQVIEAYSIFGD-DVDSMVCYLLE  159 (172)
Q Consensus       122 lsssm~mlLsMGFsY~qv~EAysIFgd-dvdsMvcYllE  159 (172)
                      -.+.+++|++|||+--++..|.-.-|. ||+.-+-||++
T Consensus        12 ~~~~l~~L~~MGF~~~~a~~AL~~t~n~~ve~A~~WLl~   50 (51)
T d2cpwa1          12 HGSALDVLLSMGFPRARAQKALASTGGRSVQTACDWLFS   50 (51)
T ss_dssp             CCCHHHHHHHHTCCHHHHHHHHHHTTTSCHHHHHHHHHS
T ss_pred             CHHHHHHHHHcCCCHHHHHHHHHHHCCCCHHHHHHHHHc
Confidence            456799999999999999999988776 99999999986

>d1wjia_ a.5.2.1 (A:) Tudor domain containing protein 3, TDRD3 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Tudor domain containing protein 3, TDRD3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.29  E-value=0.0056  Score=39.44  Aligned_cols=40  Identities=23%  Similarity=0.319  Sum_probs=36.7

Q ss_pred             ccchhhHHHHHhchhHHHHHHHhhhhccCccchhhhhhhc
Q 030739          121 VLSNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLET  160 (172)
Q Consensus       121 ~lsssm~mlLsMGFsY~qv~EAysIFgddvdsMvcYllEt  160 (172)
                      +-...++.|..|||+.-+++.|.-.-+.||+.-|-||++-
T Consensus         8 ~d~~~v~~L~~MGF~~~~a~~AL~~~~~~~e~A~~wL~~~   47 (63)
T d1wjia_           8 VDEKALKHITEMGFSKEASRQALMDNGNNLEAALNVLLTS   47 (63)
T ss_dssp             SCHHHHHHHHTTTCCHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence            4467899999999999999999999999999999999984

>d1oqya1 a.5.2.1 (A:160-200) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: DNA repair protein Hhr23a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.10  E-value=0.0043  Score=37.77  Aligned_cols=37  Identities=24%  Similarity=0.368  Sum_probs=34.0

Q ss_pred             cchhhHHHHHhchhHHHHHHHhhhhccCccchhhhhh
Q 030739          122 LSNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLL  158 (172)
Q Consensus       122 lsssm~mlLsMGFsY~qv~EAysIFgddvdsMvcYll  158 (172)
                      +-..++.|.+|||+.-+|+.|-..-+-|||.-+-||+
T Consensus         4 ~e~~i~~L~~MGF~~~~a~~AL~~~~~N~e~A~~~Ll   40 (41)
T d1oqya1           4 YETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLL   40 (41)
T ss_dssp             HHHHHHHHHTTTCCSHHHHHHHHHSCSSTTHHHHTTT
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHh
Confidence            4467899999999999999999999999999999986

>d2crna1 a.5.2.1 (A:8-58) Suppressor of T-cell receptor signaling 2 (STS-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Suppressor of T-cell receptor signaling 2 (STS-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.55  E-value=0.021  Score=35.69  Aligned_cols=38  Identities=18%  Similarity=0.419  Sum_probs=33.0

Q ss_pred             chhhHHHHHhchhHHHHHHHhhhhcc-Cccchhhhhhhc
Q 030739          123 SNSMQMVLSMGFSYLQVIEAYSIFGD-DVDSMVCYLLET  160 (172)
Q Consensus       123 sssm~mlLsMGFsY~qv~EAysIFgd-dvdsMvcYllEt  160 (172)
                      ++.+++|++|||+--++-.|.-.=|. +|+.-+-||++-
T Consensus         3 p~~v~~L~~MGF~~~~a~~Al~~t~n~~ve~A~~Wl~~h   41 (51)
T d2crna1           3 PSLLEPLLAMGFPVHTALKALAATGRKTAEEALAWLHDH   41 (51)
T ss_dssp             CSSHHHHHHTSCCHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHCCCCHHHHHHHHHHc
Confidence            45689999999999999999876665 899999999984

>d1veka_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquitin isopeptidase T
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=92.80  E-value=0.029  Score=38.01  Aligned_cols=39  Identities=26%  Similarity=0.334  Sum_probs=34.7

Q ss_pred             cchhhHHHHHhchhHHHHHHHhhhhcc-Cccchhhhhhhc
Q 030739          122 LSNSMQMVLSMGFSYLQVIEAYSIFGD-DVDSMVCYLLET  160 (172)
Q Consensus       122 lsssm~mlLsMGFsY~qv~EAysIFgd-dvdsMvcYllEt  160 (172)
                      -...++.|..|||+--++..|.-.-+. +|+.-+-||++-
T Consensus        29 d~~~v~~L~~MGF~~~~a~~AL~~t~n~~~e~A~~Wl~~h   68 (84)
T d1veka_          29 NEEIVAQLVSMGFSQLHCQKAAINTSNAGVEEAMNWLLSH   68 (84)
T ss_dssp             CHHHHHHHHHHTCCHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHcCCCHHHHHHHHHHHcCCCHHHHHHHHHHc
Confidence            356899999999999999999888775 999999999985

>d1whca_ a.5.2.1 (A:) UBA/UBX 33.3 kDa protein {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: UBA/UBX 33.3 kDa protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.42  E-value=0.12  Score=33.18  Aligned_cols=39  Identities=18%  Similarity=0.416  Sum_probs=34.0

Q ss_pred             cchhhHHHHHhchhHHHHHHHhhhhcc-Cccchhhhhhhc
Q 030739          122 LSNSMQMVLSMGFSYLQVIEAYSIFGD-DVDSMVCYLLET  160 (172)
Q Consensus       122 lsssm~mlLsMGFsY~qv~EAysIFgd-dvdsMvcYllEt  160 (172)
                      -...++.|+.|||+--++..|.-.=|. +|+.-+-||++-
T Consensus         9 d~~~l~~L~~MGF~~~~a~~AL~~t~n~~~e~A~~Wl~~h   48 (64)
T d1whca_           9 ELTALESLIEMGFPRGRAEKALALTGNQGIEAAMDWLMEH   48 (64)
T ss_dssp             CCCHHHHHHTTTCCHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHcCCCHHHHHHHHHHhCCCCHHHHHHHHHHC
Confidence            346799999999999999999877666 899999999984