Citrus Sinensis ID: 030758

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170--
Protein Sequence
MHPLPSICKLKDKKKQHKKSKKYRAAEMSSSFGIHSLKALPSLSSTRCVTKSSPLCIICKHKPNTKPAKLNKKLTGTTQKAIDCFDEKKSSLGIQAGAVLLATLEQPALAVTGENNHEIDLTVALIKVGIIAFWYFLIMPPIIMNWLRVRWYKRKLFEMYVQFMFVFMFFPG
Secondary Structure (PSIPRED)
cccccccccccHHHHHHHHHHHHcccccEEEEEEEccccccccccccccccccccEEEccccccccccccHHHHccccccccccccccccHHHHHHHHHHHHHHccccEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEccc
Secondary Structure Prediction (SSPRO)
ccccccHHHcHHHHHHccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHcccccEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mhplpsicklkdkkkQHKKSKKYRAaemsssfgihslkalpslsstrcvtkssplciickhkpntkpaklnkkltgTTQKAIDcfdekksslgIQAGAVLLATLeqpalavtgennheIDLTVALIKVGIIAFWYFLIMPPIIMNWLRVRWYKRKLFEMYVQFMFVFMFFPG
Flexible Loop (DISEMBL)
mhplpsicklkdkkkqhKKSKKYraaemsssfgihslkalpslssTRCVTKSSplciickhkpntkpaklnkklTGTTQKAIDCFDEKKSSLGIQAGAVLLATLEQPALAVTGENNHEIDLTVALIKVGIIAFWYFLIMPPIIMNWLRVRWYKRKLFEMYVQFMFVFMFFPG
Low Complexity Region (SEG)
MHPLPSICklkdkkkqhkkskkYRAAEMSSSFGIHSLKALPSLSSTRCVTKSSPLCIICKHKPNTKPAKLNKKLTGTTQKAIDCFDEKKSSLGIQAGAVLLATLEQPALAVTGENNHEIDLTVALIKVGIIAFWYFLIMPPIIMNWLRVRWYKRKLfemyvqfmfvfmffPG
Disordered region (IsUnstruct)
**********************************************RCVTKSSPLCIICKHK************TGTTQKAIDCFDEKKSSLGIQAGAVLLATLEQPALAVTGENNHEIDLTVALIKVGIIAFWYFLIMPPIIMNWLRVRWYKRKLFEMYVQFMFVFMFF**
Disordered Region (DISOPRED)
****PSI*********************SSSFGIHSL******************************************************LGIQAGAVLLATLEQPALAVTGENNHEIDLTVALIKVGIIAFWYFLIMPPIIMNWLRVRWYKRKLFEMYVQFMFVFMFFPG
Disordered Region (DISEMBL)
MHPLPSICKL****************EMSSSFGIHSLKALPSLSSTRCVTKSSPLCIICKHKPNTKPAKLNKKLTGTTQKAIDCFDEKKSSLGIQAGAVLLATLEQPALAVTGENNHEIDLTVALIKVGIIAFWYFLIMPPIIMNWLRVRWYKRKLFEMYVQFMFVFMFFPG
Disordered Region (DISPRO)
**PLPSICKLKDKKKQHKK*KKYRAAEMSSSFGIHSLKALPSLSS*******SPLC**********PAKLNKKLTGTTQKAIDCFDEKKSSLGIQAGAVLLATLEQPALAVTGENNHEIDLTVALIKVGIIAFWYFLIMPPIIMNWLRVRWYKRKLFEMYVQFMFVFMFFPG
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHoo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MHPLPSICKLKDKKKQHKKSKKYRAAEMSSSFGIHSLKALPSLSSTRCVTKSSPLCIICKHKPNTKPAKLNKKLTGTTQKAIDCFDEKKSSLGIQAGAVLLATLEQPALAVTGENNHEIDLTVALIKVGIIAFWYFLIMPPIIMNWLRVRWYKRKLFEMYVQFMFVFMFFPG
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	172
255573740	187	conserved hypothetical protein [Ricinus	0.808	0.743	0.572	9e-36
225424301	188	PREDICTED: uncharacterized protein LOC10	0.813	0.744	0.558	2e-35
297838891	191	hypothetical protein ARALYDRAFT_894894 [	0.796	0.717	0.538	2e-34
110739481	187	hypothetical protein [Arabidopsis thalia	0.796	0.732	0.531	2e-33
15223241	191	inorganic carbon transport protein-relat	0.796	0.717	0.531	2e-33
5902389	141	Unknown protein [Arabidopsis thaliana]	0.796	0.971	0.531	2e-33
224108305	187	predicted protein [Populus trichocarpa]	0.796	0.732	0.544	9e-30
195606680	192	hypothetical protein [Zea mays]	0.802	0.718	0.521	4e-29
449464794	201	PREDICTED: uncharacterized protein LOC10	0.784	0.671	0.5	4e-26
351722379	195	uncharacterized protein LOC100526956 [Gl	0.813	0.717	0.493	4e-25

>gi|255573740|ref|XP_002527791.1| conserved hypothetical protein [Ricinus communis] gi|223532826|gb|EEF34601.1| conserved hypothetical protein [Ricinus communis]

 Score =  154 bits (390), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 83/145 (57%), Positives = 100/145 (68%), Gaps = 6/145 (4%)

Query: 28  MSSSFGIHSLKALPSLSSTRCVTKSSPLCIICKHKPNTKPAKLNKKLTGTTQKAIDCFDE 87
           MS S   H  +ALPSLS  R   + +P  I  K+KP    +KL+KK++   +      D 
Sbjct: 1   MSCSLSFHIPQALPSLSPHR---RKAPFYISSKYKP-VHNSKLDKKVSSIRRSPEGYNDV 56

Query: 88  KKSSLGIQAGAVLLATLEQPALAVTGENNHEIDLTVALIKVGIIAFWYFLIMPPIIMNWL 147
           KK SL +Q GA   AT+EQ ALAVTG NN E DLT  LI+  I+AFWYFLIMPPIIMNW+
Sbjct: 57  KKFSLAVQLGA-FFATVEQSALAVTGVNNEE-DLTWVLIQSAIVAFWYFLIMPPIIMNWM 114

Query: 148 RVRWYKRKLFEMYVQFMFVFMFFPG 172
           RVRWY+RKLFEMY+QFMF F+FFPG
Sbjct: 115 RVRWYRRKLFEMYLQFMFTFIFFPG 139

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225424301|ref|XP_002284666.1| PREDICTED: uncharacterized protein LOC100259429 [Vitis vinifera] gi|297737670|emb|CBI26871.3| unnamed protein product [Vitis vinifera]

 Score =  153 bits (387), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 81/145 (55%), Positives = 98/145 (67%), Gaps = 5/145 (3%)

Query: 28  MSSSFGIHSLKALPSLSSTRCVTKSSPLCIICKHKPNTKPAKLNKKLTGTTQKAIDCFDE 87
           MS SF I   KALP L  ++C   S  +  I K   + KP K    +T   +K++D    
Sbjct: 1   MSCSFSIQIPKALPCLFHSQCKFPSLSISSIQKQSHHAKPIK---TITSIIKKSVDYIST 57

Query: 88  KKSSLGIQAGAVLLATLEQPALAVTGENNHEIDLTVALIKVGIIAFWYFLIMPPIIMNWL 147
            K SL IQ GA LLAT+E+PA AVTG N  E+DL   LI++GI+ FWYFLIMPPIIMNWL
Sbjct: 58  NKHSLAIQVGA-LLATVEKPAFAVTGVNK-EVDLIWVLIQLGIVLFWYFLIMPPIIMNWL 115

Query: 148 RVRWYKRKLFEMYVQFMFVFMFFPG 172
           R+RWY+R L EMY+QFMFVFMFFPG
Sbjct: 116 RIRWYERNLLEMYLQFMFVFMFFPG 140

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297838891|ref|XP_002887327.1| hypothetical protein ARALYDRAFT_894894 [Arabidopsis lyrata subsp. lyrata] gi|297333168|gb|EFH63586.1| hypothetical protein ARALYDRAFT_894894 [Arabidopsis lyrata subsp. lyrata]

 Score =  150 bits (379), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 77/143 (53%), Positives = 98/143 (68%), Gaps = 6/143 (4%)

Query: 30  SSFGIHSLKALPSLSSTRCVTKSSPLCIICKHKPNTKPAKLNKKLTGTTQKAIDCFDEKK 89
            S G+++  ALPSLS  +  +  SPLC+    KPN     L   +     KA D F  KK
Sbjct: 5   GSLGLYAPNALPSLS-LKPRSVKSPLCVTSYSKPNDT---LLHNVAKIRAKAGDLFGAKK 60

Query: 90  SSLGIQAGAVLLATLEQPALAVTGENNHEIDLTVALIKVGIIAFWYFLIMPPIIMNWLRV 149
           + L  Q GAVL AT++ PALA+TG NN + +L+  ++ +GII+ WYFL+MPPIIMNWLRV
Sbjct: 61  TVLAAQLGAVL-ATIDHPALAITGVNNQQ-ELSSVVLDIGIISVWYFLVMPPIIMNWLRV 118

Query: 150 RWYKRKLFEMYVQFMFVFMFFPG 172
           RWY+RK FEMY+QFMFVFMFFPG
Sbjct: 119 RWYRRKFFEMYLQFMFVFMFFPG 141

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|110739481|dbj|BAF01650.1| hypothetical protein [Arabidopsis thaliana]

 Score =  147 bits (370), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 76/143 (53%), Positives = 96/143 (67%), Gaps = 6/143 (4%)

Query: 30  SSFGIHSLKALPSLSSTRCVTKSSPLCIICKHKPNTKPAKLNKKLTGTTQKAIDCFDEKK 89
            S G+++  ALPSLS  +  +  SP CI    KPN     L   +     KA D    KK
Sbjct: 1   GSLGLYAPNALPSLS-LKPRSVKSPFCITSHTKPNDT---LLHNVNKMRAKACDILGAKK 56

Query: 90  SSLGIQAGAVLLATLEQPALAVTGENNHEIDLTVALIKVGIIAFWYFLIMPPIIMNWLRV 149
           + L  Q GAVL AT++ PALA+TG NN + +L+  ++ +GII+ WYFL+MPPIIMNWLRV
Sbjct: 57  TILAAQLGAVL-ATIDHPALAITGVNNQQ-ELSSVVLDIGIISVWYFLVMPPIIMNWLRV 114

Query: 150 RWYKRKLFEMYVQFMFVFMFFPG 172
           RWY+RK FEMY+QFMFVFMFFPG
Sbjct: 115 RWYRRKFFEMYLQFMFVFMFFPG 137

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15223241|ref|NP_177233.1| inorganic carbon transport protein-related protein [Arabidopsis thaliana] gi|12324754|gb|AAG52336.1|AC011663_15 unknown protein; 17323-16389 [Arabidopsis thaliana] gi|37202090|gb|AAQ89660.1| At1g70760 [Arabidopsis thaliana] gi|332196990|gb|AEE35111.1| inorganic carbon transport protein-related protein [Arabidopsis thaliana]

 Score =  147 bits (370), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 76/143 (53%), Positives = 96/143 (67%), Gaps = 6/143 (4%)

Query: 30  SSFGIHSLKALPSLSSTRCVTKSSPLCIICKHKPNTKPAKLNKKLTGTTQKAIDCFDEKK 89
            S G+++  ALPSLS  +  +  SP CI    KPN     L   +     KA D    KK
Sbjct: 5   GSLGLYAPNALPSLS-LKPRSVKSPFCITSHTKPNDT---LLHNVNKMRAKACDILGAKK 60

Query: 90  SSLGIQAGAVLLATLEQPALAVTGENNHEIDLTVALIKVGIIAFWYFLIMPPIIMNWLRV 149
           + L  Q GAVL AT++ PALA+TG NN + +L+  ++ +GII+ WYFL+MPPIIMNWLRV
Sbjct: 61  TILAAQLGAVL-ATIDHPALAITGVNNQQ-ELSSVVLDIGIISVWYFLVMPPIIMNWLRV 118

Query: 150 RWYKRKLFEMYVQFMFVFMFFPG 172
           RWY+RK FEMY+QFMFVFMFFPG
Sbjct: 119 RWYRRKFFEMYLQFMFVFMFFPG 141

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|5902389|gb|AAD55491.1|AC008148_1 Unknown protein [Arabidopsis thaliana]

 Score =  147 bits (370), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 76/143 (53%), Positives = 96/143 (67%), Gaps = 6/143 (4%)

Query: 30  SSFGIHSLKALPSLSSTRCVTKSSPLCIICKHKPNTKPAKLNKKLTGTTQKAIDCFDEKK 89
            S G+++  ALPSLS  +  +  SP CI    KPN     L   +     KA D    KK
Sbjct: 5   GSLGLYAPNALPSLS-LKPRSVKSPFCITSHTKPNDT---LLHNVNKMRAKACDILGAKK 60

Query: 90  SSLGIQAGAVLLATLEQPALAVTGENNHEIDLTVALIKVGIIAFWYFLIMPPIIMNWLRV 149
           + L  Q GAVL AT++ PALA+TG NN + +L+  ++ +GII+ WYFL+MPPIIMNWLRV
Sbjct: 61  TILAAQLGAVL-ATIDHPALAITGVNNQQ-ELSSVVLDIGIISVWYFLVMPPIIMNWLRV 118

Query: 150 RWYKRKLFEMYVQFMFVFMFFPG 172
           RWY+RK FEMY+QFMFVFMFFPG
Sbjct: 119 RWYRRKFFEMYLQFMFVFMFFPG 141

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224108305|ref|XP_002314797.1| predicted protein [Populus trichocarpa] gi|222863837|gb|EEF00968.1| predicted protein [Populus trichocarpa]

 Score =  134 bits (338), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 80/147 (54%), Positives = 96/147 (65%), Gaps = 10/147 (6%)

Query: 28  MSSSFGIHSLKALPSLSSTRCVTKSSPLCIICKHKP--NTKPAKLNKKLTGTTQKAIDCF 85
           MS  F   S KALP+LSS R   + + LC   K+KP  NTK   L KK T   +K  D  
Sbjct: 1   MSYCFSFQSPKALPTLSSQR---RRTSLCTTAKYKPFHNTK---LVKKATSVNRKPEDHD 54

Query: 86  DEKKSSLGIQAGAVLLATLEQPALAVTGENNHEIDLTVALIKVGIIAFWYFLIMPPIIMN 145
             KKSSL IQ  A LLAT+EQPA A+TG NN E DLT  LI++ I+ F YF++MPPII N
Sbjct: 55  QAKKSSLAIQFAA-LLATIEQPAFAITGVNNPE-DLTSILIQLAIVTFCYFILMPPIIFN 112

Query: 146 WLRVRWYKRKLFEMYVQFMFVFMFFPG 172
           WL  R Y+RKL E Y+QFM +F+FFPG
Sbjct: 113 WLWKRLYRRKLLETYLQFMCIFIFFPG 139

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|195606680|gb|ACG25170.1| hypothetical protein [Zea mays]

 Score =  132 bits (333), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 74/142 (52%), Positives = 92/142 (64%), Gaps = 4/142 (2%)

Query: 31  SFGIHSLKALPSLSSTRCVTKSSPLCIICKHKPNTKPAKLNKKLTGTTQKAIDCFDEKKS 90
           S G+ +  AL SLSST    K+ PL I    KP +    L   +     KA D F  KK+
Sbjct: 6   SLGLCAPNAL-SLSSTPRSVKA-PLSITSHTKPISNTDSLLHNIAKMRAKAGDFFGAKKT 63

Query: 91  SLGIQAGAVLLATLEQPALAVTGENNHEIDLTVALIKVGIIAFWYFLIMPPIIMNWLRVR 150
               Q G VL AT++ PALA+TG N HE +L+  ++ + II+ WYFL+MPPIIMNWLRVR
Sbjct: 64  IFAAQLGTVL-ATIDHPALAITGVN-HEQELSSVVLDISIISVWYFLVMPPIIMNWLRVR 121

Query: 151 WYKRKLFEMYVQFMFVFMFFPG 172
           WY+RK FEMY+QFM VFMFFPG
Sbjct: 122 WYRRKFFEMYLQFMCVFMFFPG 143

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449464794|ref|XP_004150114.1| PREDICTED: uncharacterized protein LOC101218173 [Cucumis sativus] gi|449519300|ref|XP_004166673.1| PREDICTED: uncharacterized protein LOC101224267 [Cucumis sativus]

 Score =  122 bits (307), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 73/146 (50%), Positives = 97/146 (66%), Gaps = 11/146 (7%)

Query: 34  IHSLKALPSLSSTRCVTKS--SPLCIICKHKPNTKPAKLNKK---LTGT--TQKAIDCFD 86
           +H  KALPSLSS++ +  S  SP  +   H  N  P+  N K   + G+   +  I    
Sbjct: 11  LHIPKALPSLSSSKTLFPSLYSPFKL---HNFNILPSNSNPKNFKIVGSIKEEDPIGYLH 67

Query: 87  EKKSSLGIQAGAVLLATLEQPALAVTGENNHEIDLTVALIKVGIIAFWYFLIMPPIIMNW 146
           +KK+SL +   A  LAT+ +PA AVTGENNHE+ LT  L ++G+I F+YFL+ PPIIMNW
Sbjct: 68  KKKTSLALHL-AAFLATVGEPASAVTGENNHEVPLTWVLAQLGVIGFFYFLVFPPIIMNW 126

Query: 147 LRVRWYKRKLFEMYVQFMFVFMFFPG 172
           LR+RWY+R L EMY+QFM VF+FFPG
Sbjct: 127 LRIRWYRRNLLEMYLQFMCVFLFFPG 152

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722379|ref|NP_001236474.1| uncharacterized protein LOC100526956 [Glycine max] gi|255631246|gb|ACU15990.1| unknown [Glycine max]

 Score =  119 bits (299), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 74/150 (49%), Positives = 96/150 (64%), Gaps = 10/150 (6%)

Query: 28  MSSSFGIHSLKALPSLSSTRCVTKSSPLCIICKHKP---NTKPAKLNKKLTGTTQKA--I 82
           MS +F +H  KALP L S+   T S  L    KHK    NT P++ + ++T ++QK+   
Sbjct: 1   MSFTFNLHVPKALPPLPSSSRGTTS--LFFSSKHKSYHNNTSPSQ-SLRITCSSQKSNHD 57

Query: 83  DCFDEKKSSLGIQAGAVLLATLEQPALAVTGENNHEIDLTVALIKVGIIAFWYFLIMPPI 142
           D    K +SL +Q G VLLA  EQP LAVTGENN   +L   L + G++ F YFL++PPI
Sbjct: 58  DDGSLKYTSLALQIG-VLLALAEQPVLAVTGENNRP-ELLWVLTQWGVVLFGYFLVVPPI 115

Query: 143 IMNWLRVRWYKRKLFEMYVQFMFVFMFFPG 172
           IM WL  RWY+R L EMY+QFM VF+FFPG
Sbjct: 116 IMYWLWKRWYRRNLLEMYLQFMCVFIFFPG 145

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	172
TAIR|locus:2013925	191	NdhL "NADH dehydrogenase-like	0.680	0.612	0.511	7.6e-25

TAIR|locus:2013925 NdhL "NADH dehydrogenase-like complex L" [Arabidopsis thaliana (taxid:3702)]

 Score = 283 (104.7 bits), Expect = 7.6e-25, P = 7.6e-25
 Identities = 65/127 (51%), Positives = 82/127 (64%)

Query:    31 SFGIHSLKALPSLS-STRCVTKSSPLCIICKHKPN-TKPAKLNKKLTGTTQKAIDCFDEK 88
             S G+++  ALPSLS   R V   SP CI    KPN T    +NK       KA D    K
Sbjct:     6 SLGLYAPNALPSLSLKPRSV--KSPFCITSHTKPNDTLLHNVNKMRA----KACDILGAK 59

Query:    89 KSSLGIQAGAVLLATLEQPALAVTGENNHEIDLTVALIKVGIIAFWYFLIMPPIIMNWLR 148
             K+ L  Q GAVL AT++ PALA+TG NN + +L+  ++ +GII+ WYFL+MPPIIMNWLR
Sbjct:    60 KTILAAQLGAVL-ATIDHPALAITGVNNQQ-ELSSVVLDIGIISVWYFLVMPPIIMNWLR 117

Query:   149 VRWYKRK 155
             VRWY+RK
Sbjct:   118 VRWYRRK 124


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.135   0.419    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      172       144   0.00091  102 3  11 22  0.42    31
                                                     30  0.48    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  583 (62 KB)
  Total size of DFA:  145 KB (2089 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  14.83u 0.20s 15.03t   Elapsed:  00:00:00
  Total cpu time:  14.83u 0.20s 15.03t   Elapsed:  00:00:00
  Start:  Thu May  9 19:31:08 2013   End:  Thu May  9 19:31:08 2013

GO:0009507 "chloroplast" evidence=ISM

GO:0016655 "oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009773 "photosynthetic electron transport in photosystem I" evidence=TAS

GO:0010598 "NAD(P)H dehydrogenase complex (plastoquinone)" evidence=ISS;NAS

GO:0042651 "thylakoid membrane" evidence=IDA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0030003 "cellular cation homeostasis" evidence=RCA

GO:0070838 "divalent metal ion transport" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.6.5	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	scaffold_201968.1	annotation not avaliable (191 aa)
		(Arabidopsis lyrata)
Predicted Functional Partners:
	fgenesh2_kg.8__1751__AT5G58260.1	annotation not avaliable (209 aa)				•			•		0.693
	fgenesh2_kg.2__1754__AT1G74880.1	annotation not avaliable (158 aa)				•			•		0.665
	scaffold_900034.1	annotation not avaliable (393 aa)					•		•		0.663
	fgenesh2_kg.1__1751__AT1G15980.1	annotation not avaliable (460 aa)				•			•		0.641
	scaffold_704144.1	annotation not avaliable (157 aa)				•			•		0.612
	fgenesh1_pm.C_scaffold_7000552	annotation not avaliable (141 aa)				•			•		0.559
	fgenesh2_kg.3__76__AT3G01480.1	annotation not avaliable (437 aa)				•			•		0.536
	fgenesh2_kg.4__3042__AT2G47910.1	annotation not avaliable (233 aa)				•			•		0.529
	fgenesh2_kg.5__1948__AT3G55330.1	annotation not avaliable (229 aa)				•			•		0.499
	fgenesh2_kg.1__1528__AT1G14150.1	annotation not avaliable (189 aa)				•			•		0.490

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	172
pfam10716	77	pfam10716, NdhL, NADH dehydrogenase transmembrane	2e-19
pfam13926	147	pfam13926, DUF4211, Domain of unknown function (DU	0.002

>gnl|CDD|220858 pfam10716, NdhL, NADH dehydrogenase transmembrane subunit

 Score = 77.3 bits (191), Expect = 2e-19
 Identities = 19/48 (39%), Positives = 28/48 (58%)

Query: 125 LIKVGIIAFWYFLIMPPIIMNWLRVRWYKRKLFEMYVQFMFVFMFFPG 172
           L+  G +A  Y L++P I+  W+  RWY    FE  + +  VF+FFPG
Sbjct: 13  LLAYGALAGLYLLVVPLILYFWMNKRWYVMSKFERLLMYGLVFLFFPG 60

The NdhL family is a component of the NDH-1L complex that is one of the proton-pumping NADH:ubiquinone oxidoreductases that catalyze the electron transfer from NADH to ubiquinone linked with proton translocation across the membrane. NDH-1L is essential for photoheterotrophic cell growth. NdhL appears to contain two transmembrane helices and it is necessary for the functioning of though not the correct assembly of the NDH-1 complex in Synechocystis 6803. The conservation between cyanobacteria and green plants suggests that chloroplast NDH-1 complexes contain related subunits. Length = 77

>gnl|CDD|206097 pfam13926, DUF4211, Domain of unknown function (DUF4211)

 Score = 36.1 bits (84), Expect = 0.002
 Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 4/73 (5%)

Query: 4   LPSICKLKDKKKQHKKSKKYRAAEMSSSFGIHSLKALPSLSSTRCVTKSSPLCIICKHKP 63
           LP++ K+ D+ +  K S    +A  S  F   +L+  P L  T     +   C  C    
Sbjct: 63  LPALRKVDDEVEGRKDSLLSSSA-WSPDF-KEALETRPQLDVTELSPPTGGKCDACNRS- 119

Query: 64  NTKPAKLNKKLTG 76
              PA    +L+G
Sbjct: 120 -GHPATFRIRLSG 131

Length = 147

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	172
PF10716	81	NdhL: NADH dehydrogenase transmembrane subunit; In	99.96

>PF10716 NdhL: NADH dehydrogenase transmembrane subunit; InterPro: IPR019654 NAD(P)H-quinone oxidoreductase subunit L (NdhL) is a component of the NDH-1L complex that is one of the proton-pumping NADH:ubiquinone oxidoreductases that catalyse the electron transfer from NADH to ubiquinone linked with proton translocation across the membrane

Probab=99.96  E-value=2.1e-30  Score=191.00  Aligned_cols=65  Identities=35%  Similarity=0.791  Sum_probs=61.6

Q ss_pred             hhHHHHHHHhhcCCceeeecccCCchhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhhHHHHHHhhheeeecCC
Q 030758           94 IQAGAVLLATLEQPALAVTGENNHEIDLTVALIKVGIIAFWYFLIMPPIIMNWLRVRWYKRKLFEMYVQFMFVFMFFPG  172 (172)
Q Consensus        94 lq~ga~~lA~~e~PAlAvtg~~n~~~dtl~Vll~Y~~La~~YLLVvP~iiy~wLn~RWYv~~~~ER~~mY~LVF~FFPG  172 (172)
                      .||||++ +++             ++|+++|+++|++++++||+|+|+++|+|||+|||+||++||++||||||+||||
T Consensus         1 m~~~~l~-~~i-------------~~~~l~vl~~y~~l~~~YLlVvP~~l~~wm~~RWy~~~~~Er~~~y~lvF~FFPG   65 (81)
T PF10716_consen    1 MQCGALL-SSI-------------PSDTLLVLLAYAALAGLYLLVVPLILYFWMNKRWYVMSSFERLFMYFLVFLFFPG   65 (81)
T ss_pred             CcHHHHH-HHc-------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            3789999 544             8999999999999999999999999999999999999999999999999999998

NDH-1L is essential for photoheterotrophic cell growth. NdhL appears to contain two transmembrane helices and it is necessary for the functioning of though not the correct assembly of the NDH-1 complex in Synechocystis 6803. The conservation between cyanobacteria and green plants suggests that chloroplast NDH-1 complexes contain related subunits []. ; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0055114 oxidation-reduction process

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00