Citrus Sinensis ID: 030782

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-
Protein Sequence
MKTSGSKNENGSKAEVEASSAAGNKPAESSKPSEPPKDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMNLTPTIEGFHPKDLGEQAFDATGMIFGSQTAREYAQGSQQDWLHMQVGGSFERAT
Secondary Structure (PSIPRED)
cccccccccccccHHHHHcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHccccccHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHcccccccccccccccccccHHcccccccccEEEccccccccc
Coil and Loop (DISEMBL)
mktsgsknengskaeveassaagnkpaesskpseppkdyihvrarrgqatdshSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSrmnltptiegfhpkdlgeqafdatgmifgsQTAREYAQGSQQDWlhmqvggsferat
Flexible Loop (DISEMBL)
mktsgsknengskaeveassaagnkpaesskpseppkDYIHVRarrgqatdshslaeRARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMNLTPTIEGFHPKDLGEQAFDATGMIFGSQTAREYAQGSQQDWLHMQVGGSFERAT
Low Complexity Region (SEG)
MKTSGSKNENGSKAEVEASSAAGNkpaesskpseppkDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMNLTPTIEGFHPKDLGEQAFDATGMIFGSQTAREYAQGSQQDWLHMQVGGSFERAT
Disordered region (IsUnstruct)
*******************************************************************MKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMNLTPTIEGFHPKDLGEQAFDATGMIFGSQ**************************
Disordered Region (DISOPRED)
**********************************************************ARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLS*****************************************************************
Disordered Region (DISEMBL)
***********************************PKDYIHVR*****************REKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMNLTPTIEGFHPKDLGEQAFDATGMIFGSQTAREYAQGSQQDWLHMQVGGSFERAT
Disordered Region (DISPRO)
***********************************PKDYIHVRARRGQ***SHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMNLTPTIEGFHPKDLGEQAFDATGMIFGSQTAREYAQGSQQDWLHMQVGGS*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKTSGSKNENGSKAEVEASSAAGNKPAESSKPSEPPKDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYxxxxxxxxxxxxxxxxxxxxxMNLTPTIEGFHPKDLGEQAFDATGMIFGSQTAREYAQGSQQDWLHMQVGGSFERAT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	171	2.2.26 [Sep-21-2011]
Q9LV17	281	Transcription factor bHLH	no	no	0.853	0.519	0.673	4e-50
Q0JXE7	343	Transcription factor BPE	no	no	0.660	0.329	0.796	7e-46
Q9LK48	371	Transcription factor bHLH	no	no	0.654	0.301	0.697	2e-40
Q9FJL4	498	Transcription factor bHLH	no	no	0.508	0.174	0.850	2e-40
Q9SRT2	456	Transcription factor bHLH	no	no	0.532	0.199	0.802	5e-39
Q9CAA9	486	Transcription factor bHLH	no	no	0.555	0.195	0.775	3e-38
Q93W88	286	Transcription factor bHLH	no	no	0.631	0.377	0.690	1e-35
Q6NKN9	366	Transcription factor bHLH	no	no	0.590	0.275	0.692	2e-34
Q9C670	390	Transcription factor bHLH	no	no	0.643	0.282	0.630	2e-34
Q8GY61	335	Transcription factor bHLH	no	no	0.456	0.232	0.833	7e-34

>sp|Q9LV17|BH079_ARATH Transcription factor bHLH79 OS=Arabidopsis thaliana GN=BHLH79 PE=2 SV=1

 Score =  197 bits (500), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 99/147 (67%), Positives = 108/147 (73%), Gaps = 1/147 (0%)

Query: 25  KPAESSKPSEPPKDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGK 84
           K  E     EPPKDYIHVRARRGQATD HSLAERARREKISE+M  LQD++PGCNK+IGK
Sbjct: 136 KATEQKNKPEPPKDYIHVRARRGQATDRHSLAERARREKISEKMTALQDIIPGCNKIIGK 195

Query: 85  ALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMNLTPTIEGFHPKDLGEQAFDATGMIFGS 144
           ALVLDEIINYIQSLQRQVEFLSMKLE VNS  +  PTI  F   DLG    D    I+  
Sbjct: 196 ALVLDEIINYIQSLQRQVEFLSMKLEVVNSGASTGPTIGVFPSGDLGTLPIDVHRTIYEQ 255

Query: 145 QTAREYAQGSQQDWLHMQVGGSFERAT 171
           Q A E  + SQ +WLHMQV G+F R T
Sbjct: 256 QEANE-TRVSQPEWLHMQVDGNFNRTT 281

Arabidopsis thaliana (taxid: 3702)

>sp|Q0JXE7|BPE_ARATH Transcription factor BPE OS=Arabidopsis thaliana GN=BPE PE=2 SV=1

 Score =  182 bits (463), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 94/118 (79%), Positives = 100/118 (84%), Gaps = 5/118 (4%)

Query: 13  KAEVEASSAAGNKPAESSKPSEPPKDYIHVRARRGQATDSHSLAERARREKISERMKILQ 72
           KAE E+    G +  +  +  EP KDYIHVRARRGQATDSHSLAERARREKISERMKILQ
Sbjct: 110 KAEAES---LGTETEQKKQQMEPTKDYIHVRARRGQATDSHSLAERARREKISERMKILQ 166

Query: 73  DLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMNLTPTIEGFHPKDL 130
           DLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMN  P IE F PK++
Sbjct: 167 DLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMN--PGIEVFPPKEV 222

Involved in the control of petal size, by interfering with postmitotic cell expansion to limit final petal cell size.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LK48|BH077_ARATH Transcription factor bHLH77 OS=Arabidopsis thaliana GN=BHLH77 PE=2 SV=1

 Score =  165 bits (417), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 83/119 (69%), Positives = 93/119 (78%), Gaps = 7/119 (5%)

Query: 5   GSKNENGSKAEVEASSAAGNKPAES-------SKPSEPPKDYIHVRARRGQATDSHSLAE 57
           GSK    SK +V  SS  G +  +S       +KP E PKDYIHVRARRGQATDSHSLAE
Sbjct: 147 GSKGGKRSKQDVAGSSKNGVEKCDSKGDNKDDAKPPEAPKDYIHVRARRGQATDSHSLAE 206

Query: 58  RARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRM 116
           RARREKISERM +LQDLVPGCN++ GKA++LDEIINY+QSLQRQVEFLSMKL  VN RM
Sbjct: 207 RARREKISERMTLLQDLVPGCNRITGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRM 265

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FJL4|BH078_ARATH Transcription factor bHLH78 OS=Arabidopsis thaliana GN=BHLH78 PE=2 SV=1

 Score =  164 bits (415), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 74/87 (85%), Positives = 81/87 (93%)

Query: 27  AESSKPSEPPKDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKAL 86
           + ++KP EPPKDYIHVRARRGQATDSHSLAER RREKI ERMK+LQDLVPGCNKV GKAL
Sbjct: 286 SNNTKPPEPPKDYIHVRARRGQATDSHSLAERVRREKIGERMKLLQDLVPGCNKVTGKAL 345

Query: 87  VLDEIINYIQSLQRQVEFLSMKLEAVN 113
           +LDEIINY+QSLQRQVEFLSMKL +VN
Sbjct: 346 MLDEIINYVQSLQRQVEFLSMKLSSVN 372

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SRT2|BH062_ARATH Transcription factor bHLH62 OS=Arabidopsis thaliana GN=BHLH62 PE=2 SV=1

 Score =  160 bits (404), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 73/91 (80%), Positives = 83/91 (91%)

Query: 28  ESSKPSEPPKDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALV 87
           + +K  +P KDYIHVRARRGQATDSHSLAER RREKISERMK+LQDLVPGCNKV GKAL+
Sbjct: 244 DKTKSIDPYKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALM 303

Query: 88  LDEIINYIQSLQRQVEFLSMKLEAVNSRMNL 118
           LDEIINY+QSLQRQVEFLSMKL +VN+R++ 
Sbjct: 304 LDEIINYVQSLQRQVEFLSMKLSSVNTRLDF 334

Arabidopsis thaliana (taxid: 3702)

>sp|Q9CAA9|BH049_ARATH Transcription factor bHLH49 OS=Arabidopsis thaliana GN=BHLH49 PE=2 SV=1

 Score =  157 bits (397), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 76/98 (77%), Positives = 84/98 (85%), Gaps = 3/98 (3%)

Query: 33  SEPPKD-YIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEI 91
           S+PPKD YIHVRARRGQAT+SHSLAER RREKISERMK LQDLVPGCNKV GKA++LDEI
Sbjct: 293 SDPPKDGYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCNKVTGKAVMLDEI 352

Query: 92  INYIQSLQRQVEFLSMKLEAVNSRMNLTPTIEGFHPKD 129
           INY+QSLQRQVEFLSMKL  VN +M+    +EG   KD
Sbjct: 353 INYVQSLQRQVEFLSMKLATVNPQMDF--NLEGLLAKD 388

Arabidopsis thaliana (taxid: 3702)

>sp|Q93W88|BH137_ARATH Transcription factor bHLH137 OS=Arabidopsis thaliana GN=BHLH137 PE=2 SV=1

 Score =  149 bits (375), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 78/113 (69%), Positives = 87/113 (76%), Gaps = 5/113 (4%)

Query: 2   KTSGSK--NENGSKAEVEASSAAGNKPAESSKPSEPPKDYIHVRARRGQATDSHSLAERA 59
           KT G K  N N SK  VE   +   K    SK  EPP DYIHVRARRGQATDSHSLAER 
Sbjct: 97  KTRGRKARNSNNSKEGVEGRKSKKQK--RGSK-EEPPTDYIHVRARRGQATDSHSLAERV 153

Query: 60  RREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAV 112
           RREKISERM+ LQ+LVPGC+KV GKAL+LDEIINY+Q+LQ QVEFLSMKL ++
Sbjct: 154 RREKISERMRTLQNLVPGCDKVTGKALMLDEIINYVQTLQTQVEFLSMKLTSI 206

Arabidopsis thaliana (taxid: 3702)

>sp|Q6NKN9|BH074_ARATH Transcription factor bHLH74 OS=Arabidopsis thaliana GN=BHLH74 PE=2 SV=1

 Score =  145 bits (365), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 72/104 (69%), Positives = 87/104 (83%), Gaps = 3/104 (2%)

Query: 28  ESSKPSEPPK-DYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKAL 86
           ESS+  E PK +YIH+RARRGQAT+SHSLAER RREKISERM++LQ+LVPGCNK+ GKA+
Sbjct: 191 ESSQSEEAPKENYIHMRARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAV 250

Query: 87  VLDEIINYIQSLQRQVEFLSMKLEAVNSRMNLTPTIEGFHPKDL 130
           +LDEIINY+QSLQ+QVEFLSMKL  VN  +N+   I+    KDL
Sbjct: 251 MLDEIINYVQSLQQQVEFLSMKLATVNPEINI--DIDRILAKDL 292

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C670|BH076_ARATH Transcription factor bHLH76 OS=Arabidopsis thaliana GN=BHLH76 PE=2 SV=1

 Score =  144 bits (364), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 70/111 (63%), Positives = 88/111 (79%), Gaps = 1/111 (0%)

Query: 9   ENGSKAEVEASSAAGNKPAESSKPSEPPKD-YIHVRARRGQATDSHSLAERARREKISER 67
           E+  + + ++ ++  NK     +PS+  KD YIH+RARRGQAT+SHSLAER RREKISER
Sbjct: 189 EDKKQKDEQSPTSNANKTNSEKQPSDSLKDGYIHMRARRGQATNSHSLAERVRREKISER 248

Query: 68  MKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMNL 118
           MK LQDLVPGC+KV GKA++LDEIINY+QSLQ Q+EFLSMKL AVN  ++ 
Sbjct: 249 MKFLQDLVPGCDKVTGKAVMLDEIINYVQSLQCQIEFLSMKLSAVNPVLDF 299

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GY61|BH063_ARATH Transcription factor bHLH63 OS=Arabidopsis thaliana GN=BHLH63 PE=2 SV=1

 Score =  143 bits (360), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 65/78 (83%), Positives = 71/78 (91%)

Query: 38  DYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQS 97
           DYIHVRARRGQATDSHS+AER RREKISERMK LQDLVPGC+K+ GKA +LDEIINY+QS
Sbjct: 168 DYIHVRARRGQATDSHSIAERVRREKISERMKFLQDLVPGCDKITGKAGMLDEIINYVQS 227

Query: 98  LQRQVEFLSMKLEAVNSR 115
           LQRQ+EFLSMKL  VN R
Sbjct: 228 LQRQIEFLSMKLAIVNPR 245

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	171
224119176	272	predicted protein [Populus trichocarpa]	0.994	0.625	0.826	9e-77
224133354	213	predicted protein [Populus trichocarpa]	0.994	0.798	0.832	7e-75
255540845	275	DNA binding protein, putative [Ricinus c	0.988	0.614	0.825	1e-74
55419646	222	bHLH transcription factor [Gossypium hir	1.0	0.770	0.810	9e-74
297734057	269	unnamed protein product [Vitis vinifera]	0.988	0.628	0.820	4e-73
225456604	284	PREDICTED: transcription factor bHLH79 i	0.988	0.595	0.820	7e-73
356516734	269	PREDICTED: transcription factor bHLH79-l	1.0	0.635	0.8	2e-71
449440736	276	PREDICTED: transcription factor bHLH79-l	1.0	0.619	0.755	1e-70
351720977	240	uncharacterized protein LOC100306638 [Gl	0.964	0.687	0.792	1e-67
356562791	229	PREDICTED: transcription factor bHLH79-l	0.982	0.733	0.742	1e-67

>gi|224119176|ref|XP_002318005.1| predicted protein [Populus trichocarpa] gi|222858678|gb|EEE96225.1| predicted protein [Populus trichocarpa]

 Score =  291 bits (744), Expect = 9e-77,   Method: Compositional matrix adjust.
 Identities = 143/173 (82%), Positives = 154/173 (89%), Gaps = 3/173 (1%)

Query: 2   KTSGSKNENG-SKAEVEASSAAGNKPAE-SSKPSEPP-KDYIHVRARRGQATDSHSLAER 58
           K SGS+NEN  S+AE+EASSAA NKPAE SSKPSEPP +DYIHVR+RRGQATDSHSLAER
Sbjct: 100 KISGSRNENNDSRAEIEASSAANNKPAEPSSKPSEPPMQDYIHVRSRRGQATDSHSLAER 159

Query: 59  ARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMNL 118
           ARRE+I ERMKILQDLVPGCNKVIGKAL LDEIINYIQSLQ QVEFLSMKLEAVNSRM+ 
Sbjct: 160 ARRERIGERMKILQDLVPGCNKVIGKALALDEIINYIQSLQCQVEFLSMKLEAVNSRMST 219

Query: 119 TPTIEGFHPKDLGEQAFDATGMIFGSQTAREYAQGSQQDWLHMQVGGSFERAT 171
           +P IEG HPKDLG Q FDATGMIFG Q  R+Y QGSQ +WLHMQVGGSF+RAT
Sbjct: 220 SPAIEGLHPKDLGAQPFDATGMIFGPQPTRDYVQGSQPEWLHMQVGGSFKRAT 272

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224133354|ref|XP_002321546.1| predicted protein [Populus trichocarpa] gi|222868542|gb|EEF05673.1| predicted protein [Populus trichocarpa]

 Score =  285 bits (728), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 144/173 (83%), Positives = 150/173 (86%), Gaps = 3/173 (1%)

Query: 2   KTSGSKNENG-SKAEVEASSAAGNKPAE-SSKPSEPPK-DYIHVRARRGQATDSHSLAER 58
           K SGS++EN  S+AE EASSAA NK AE SSKPSEPPK DYIHVRARRGQATDSHSLAER
Sbjct: 41  KISGSRSENNDSRAETEASSAANNKTAEQSSKPSEPPKQDYIHVRARRGQATDSHSLAER 100

Query: 59  ARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMNL 118
           ARREKISERM +LQDLVPGCNKVIGKALVLDEIINYIQSLQ QVEFLSMKLEAVNSRMN 
Sbjct: 101 ARREKISERMNMLQDLVPGCNKVIGKALVLDEIINYIQSLQCQVEFLSMKLEAVNSRMNT 160

Query: 119 TPTIEGFHPKDLGEQAFDATGMIFGSQTAREYAQGSQQDWLHMQVGGSFERAT 171
           +PT E  HPKDLG Q F ATGMI G Q  REY QGSQ +WLHMQVGGSFERAT
Sbjct: 161 SPTTEHLHPKDLGAQPFVATGMISGPQPTREYVQGSQSEWLHMQVGGSFERAT 213

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255540845|ref|XP_002511487.1| DNA binding protein, putative [Ricinus communis] gi|223550602|gb|EEF52089.1| DNA binding protein, putative [Ricinus communis]

 Score =  283 bits (725), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 142/172 (82%), Positives = 150/172 (87%), Gaps = 3/172 (1%)

Query: 1   MKTSGSKNENG-SKAEVEASSAAGNKPAE-SSKPSEPPK-DYIHVRARRGQATDSHSLAE 57
           MK SGS+NENG SKAEVEASSA     AE +SK SEPPK DYIHVRARRGQATDSHSLAE
Sbjct: 102 MKISGSQNENGKSKAEVEASSANDKNAAEQNSKISEPPKQDYIHVRARRGQATDSHSLAE 161

Query: 58  RARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMN 117
           RARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRM 
Sbjct: 162 RARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMG 221

Query: 118 LTPTIEGFHPKDLGEQAFDATGMIFGSQTAREYAQGSQQDWLHMQVGGSFER 169
           + PT+EGFHPKD   Q FDATGMIFG Q AR+YAQ S  +WLHMQ+GG+ ER
Sbjct: 222 MNPTVEGFHPKDADAQPFDATGMIFGPQVARDYAQASHHEWLHMQIGGNLER 273

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|55419646|gb|AAV51936.1| bHLH transcription factor [Gossypium hirsutum]

 Score =  281 bits (718), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 141/174 (81%), Positives = 153/174 (87%), Gaps = 3/174 (1%)

Query: 1   MKTSGSKNEN-GSK-AEVEASSAAGNKPAESSKPSEPPK-DYIHVRARRGQATDSHSLAE 57
           MKT  SKN N GSK AEVEASSA G+KP ++SKP+EPPK DYIHVRARRGQATDSHSLAE
Sbjct: 49  MKTPVSKNGNTGSKEAEVEASSADGSKPDKNSKPAEPPKQDYIHVRARRGQATDSHSLAE 108

Query: 58  RARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMN 117
           RARRE+ISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQ+QVEFLSMKLEAVNSR+N
Sbjct: 109 RARRERISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQQQVEFLSMKLEAVNSRIN 168

Query: 118 LTPTIEGFHPKDLGEQAFDATGMIFGSQTAREYAQGSQQDWLHMQVGGSFERAT 171
           + P+ EGFH KDLG Q  D  GMIFGSQTAREYAQG   +WL M VGG+F+RAT
Sbjct: 169 VNPSFEGFHSKDLGLQPIDGAGMIFGSQTAREYAQGLHPEWLQMHVGGNFKRAT 222

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297734057|emb|CBI15304.3| unnamed protein product [Vitis vinifera]

 Score =  278 bits (712), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 142/173 (82%), Positives = 150/173 (86%), Gaps = 4/173 (2%)

Query: 1   MKTSGSKNENG-SKAEVEASSAAGNKPAESSKPSEPPK-DYIHVRARRGQATDSHSLAER 58
           MK S + +ENG SKAE+EASS AG KPAE SKP+E  K DYIHVRARRGQATDSHSLAER
Sbjct: 99  MKISRTPDENGGSKAELEASSVAGEKPAEESKPAEQSKQDYIHVRARRGQATDSHSLAER 158

Query: 59  ARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMNL 118
           ARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMN 
Sbjct: 159 ARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMNH 218

Query: 119 TPTIEGFHPKDLGEQAFDATGMIFGSQTAREYAQGSQQDWLHMQVGGSFERAT 171
             T+EGF  KDLG Q FDA  MI+GSQ  REYAQGSQ +WLHMQVGGS ERA+
Sbjct: 219 --TVEGFPLKDLGVQTFDAAAMIYGSQATREYAQGSQPEWLHMQVGGSIERAS 269

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225456604|ref|XP_002267633.1| PREDICTED: transcription factor bHLH79 isoform 1 [Vitis vinifera]

 Score =  278 bits (710), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 142/173 (82%), Positives = 150/173 (86%), Gaps = 4/173 (2%)

Query: 1   MKTSGSKNENG-SKAEVEASSAAGNKPAESSKPSEPPK-DYIHVRARRGQATDSHSLAER 58
           MK S + +ENG SKAE+EASS AG KPAE SKP+E  K DYIHVRARRGQATDSHSLAER
Sbjct: 114 MKISRTPDENGGSKAELEASSVAGEKPAEESKPAEQSKQDYIHVRARRGQATDSHSLAER 173

Query: 59  ARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMNL 118
           ARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMN 
Sbjct: 174 ARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMN- 232

Query: 119 TPTIEGFHPKDLGEQAFDATGMIFGSQTAREYAQGSQQDWLHMQVGGSFERAT 171
             T+EGF  KDLG Q FDA  MI+GSQ  REYAQGSQ +WLHMQVGGS ERA+
Sbjct: 233 -HTVEGFPLKDLGVQTFDAAAMIYGSQATREYAQGSQPEWLHMQVGGSIERAS 284

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356516734|ref|XP_003527048.1| PREDICTED: transcription factor bHLH79-like [Glycine max]

 Score =  273 bits (698), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 140/175 (80%), Positives = 147/175 (84%), Gaps = 4/175 (2%)

Query: 1   MKTSGSKNEN-GSKAEVEASSAAGNKPAE-SSKPSEPPK-DYIHVRARRGQATDSHSLAE 57
           MK  GS  EN G KAE EASSA GNK +E S+KP E PK DYIHVRARRGQATDSHSLAE
Sbjct: 95  MKLGGSSVENDGFKAEAEASSAGGNKSSEQSNKPCEAPKQDYIHVRARRGQATDSHSLAE 154

Query: 58  RARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMN 117
           RARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMN
Sbjct: 155 RARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMN 214

Query: 118 LTPTIEGFHPKDLGEQAFDATGMIFGSQTAREYAQGSQ-QDWLHMQVGGSFERAT 171
           + PTI+GF  KD+G Q FD  GM+FGSQ AR YAQGS    WLHMQ+GG FER T
Sbjct: 215 MNPTIDGFPSKDVGTQPFDIAGMVFGSQAARGYAQGSSPPGWLHMQIGGGFERTT 269

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449440736|ref|XP_004138140.1| PREDICTED: transcription factor bHLH79-like [Cucumis sativus] gi|449477343|ref|XP_004154996.1| PREDICTED: transcription factor bHLH79-like [Cucumis sativus]

 Score =  270 bits (691), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 130/172 (75%), Positives = 147/172 (85%), Gaps = 1/172 (0%)

Query: 1   MKTSGSKNENGS-KAEVEASSAAGNKPAESSKPSEPPKDYIHVRARRGQATDSHSLAERA 59
           MK   S++ENG  KAEV+ +S+ G K AE S   EPPKDYIHVRARRGQATDSHSLAERA
Sbjct: 105 MKVVESRDENGGIKAEVDPNSSDGKKLAEQSPKPEPPKDYIHVRARRGQATDSHSLAERA 164

Query: 60  RREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMNLT 119
           RREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMN+T
Sbjct: 165 RREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMNIT 224

Query: 120 PTIEGFHPKDLGEQAFDATGMIFGSQTAREYAQGSQQDWLHMQVGGSFERAT 171
           P IEGF  K++  Q +DA G+++GSQ AR+Y QG+Q +WLHMQ+GG FER +
Sbjct: 225 PGIEGFTVKNIVNQPYDAAGILYGSQAARDYTQGAQTEWLHMQIGGGFERTS 276

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351720977|ref|NP_001237962.1| uncharacterized protein LOC100306638 [Glycine max] gi|255629145|gb|ACU14917.1| unknown [Glycine max]

 Score =  260 bits (664), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 134/169 (79%), Positives = 140/169 (82%), Gaps = 4/169 (2%)

Query: 1   MKTSGSKNEN-GSKAEVEASSAAGNKPAE-SSKPSEPPK-DYIHVRARRGQATDSHSLAE 57
           MK  GS  EN G KAE EASS  GNK +E S+KP E PK DYIHVRARRGQATDSHSLAE
Sbjct: 70  MKVGGSSFENDGFKAEAEASSVGGNKSSEQSNKPCEAPKPDYIHVRARRGQATDSHSLAE 129

Query: 58  RARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMN 117
           RARREKISERMKILQDL PGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMN
Sbjct: 130 RARREKISERMKILQDLAPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMN 189

Query: 118 LTPTIEGFHPKDLGEQAFDATGMIFGSQTAREYAQGSQQD-WLHMQVGG 165
             PTI+GF  KD+G Q FD  GM+FGSQ AR YAQGS    WLHMQ+GG
Sbjct: 190 TNPTIDGFPSKDVGTQPFDIAGMVFGSQAARGYAQGSSHPGWLHMQIGG 238

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356562791|ref|XP_003549652.1| PREDICTED: transcription factor bHLH79-like [Glycine max]

 Score =  260 bits (664), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 130/175 (74%), Positives = 150/175 (85%), Gaps = 7/175 (4%)

Query: 4   SGSKNENGS--KAEVEASSAAGNK-PAESSKPS---EPPK-DYIHVRARRGQATDSHSLA 56
           SGS+++NG+    EV+A+S AGNK P +++KPS   +PPK DYIHVRARRGQATDSHSLA
Sbjct: 55  SGSQDQNGALKAGEVDATSVAGNKLPEQTAKPSSSEQPPKQDYIHVRARRGQATDSHSLA 114

Query: 57  ERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRM 116
           ERARREKISERMKILQD+VPGCNKVIGKALVLDEIINYIQSLQ QVEFLSMKLEAVNSR+
Sbjct: 115 ERARREKISERMKILQDIVPGCNKVIGKALVLDEIINYIQSLQHQVEFLSMKLEAVNSRL 174

Query: 117 NLTPTIEGFHPKDLGEQAFDATGMIFGSQTAREYAQGSQQDWLHMQVGGSFERAT 171
           +++PTIE F  K++G Q FD  G+IFGSQ AR YAQGSQ  WLHMQ+ G FE+AT
Sbjct: 175 SMSPTIECFPSKEVGTQPFDLAGIIFGSQPARGYAQGSQPGWLHMQIAGGFEKAT 229

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	171
UNIPROTKB|Q84T08	265	OSJNBa0087C10.10 "BHLH transcr	0.982	0.633	0.645	2.2e-50
UNIPROTKB|Q69WS3	268	OJ1118_E12.15 "Putative bHLH p	0.982	0.626	0.585	9.1e-45
TAIR|locus:2172209	281	AT5G62610 "AT5G62610" [Arabido	0.988	0.601	0.591	1e-43
TAIR|locus:2202867	343	BPEp "AT1G59640" [Arabidopsis	0.532	0.265	0.924	9.9e-39
UNIPROTKB|Q69JJ6	428	OSJNBa0026C08.22 "TA1 protein-	0.923	0.369	0.521	1.2e-33
TAIR|locus:2079676	456	AT3G07340 "AT3G07340" [Arabido	0.532	0.199	0.774	3.2e-33
UNIPROTKB|Q5VR96	437	P0038C05.31-1 "Os06g0275600 pr	0.807	0.315	0.566	5.2e-33
UNIPROTKB|Q84QW1	405	OJ1191_A10.109 "BHLH transcrip	0.672	0.283	0.619	3.7e-32
TAIR|locus:2095198	371	AT3G23690 "AT3G23690" [Arabido	0.672	0.309	0.631	4.7e-32
UNIPROTKB|Q5N802	481	P0004D12.24 "BHLH transcriptio	0.637	0.226	0.636	6e-32

UNIPROTKB|Q84T08 OSJNBa0087C10.10 "BHLH transcription factor, putative, expressed" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 524 (189.5 bits), Expect = 2.2e-50, P = 2.2e-50
 Identities = 111/172 (64%), Positives = 130/172 (75%)

Query:     2 KTSGSKNENGSKAEVEASSAAGNXXXXXXXXXXXXXDYIHVRARRGQATDSHSLAERARR 61
             K+SG  +   ++AE ++ +A+ +             DYIHVRARRGQATDSHSLAERARR
Sbjct:    96 KSSGDNSSLRTEAETDSRNASKSGDQNPPPPEPPKQDYIHVRARRGQATDSHSLAERARR 155

Query:    62 EKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMNLTPT 121
             EKISERMKILQDLVPGCNKVIGKA VLDEIINYIQ+LQRQVEFLSMKLEAVN+ +N    
Sbjct:   156 EKISERMKILQDLVPGCNKVIGKASVLDEIINYIQALQRQVEFLSMKLEAVNAHVN--NG 213

Query:   122 IEGFHPKDLGEQAFD-ATGMIFGSQTAREYAQGSQ-QDWLHMQVGGSFERAT 171
             IE F PKD G Q ++ A G+ F  QT REYAQGS   +WLHMQ+GG++ER T
Sbjct:   214 IEAFPPKDFGAQVYNTAPGLTFDPQTPREYAQGSTPSEWLHMQIGGTYERVT 265

GO:0005634 "nucleus" evidence=IC

UNIPROTKB|Q69WS3 OJ1118_E12.15 "Putative bHLH protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 471 (170.9 bits), Expect = 9.1e-45, P = 9.1e-45
 Identities = 110/188 (58%), Positives = 123/188 (65%)

Query:     1 MKTSGSKNENGSKAEVEASSAAGNXXXXXXXXXXX----XXDYIHVRARRGQATDSHSLA 56
             +K   S ++N S    EA + +GN                 DYIHVRARRGQATDSHSLA
Sbjct:    84 LKPMKSSDKNDS-LRTEAGTDSGNSSKAADKNATPPEPPKQDYIHVRARRGQATDSHSLA 142

Query:    57 ERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEF------------ 104
             ERARREKISERMKILQDLVPGCNKVIGKA VLDEIINYIQSLQ QVEF            
Sbjct:   143 ERARREKISERMKILQDLVPGCNKVIGKASVLDEIINYIQSLQHQVEFMFKYLIELFLQF 202

Query:   105 LSMKLEAVNSRMNLTPTIEGFHPKDLGEQAFD-ATGMIFGSQTAREYAQGSQQDWLHMQV 163
             LSMKLEAVNS M     I  F  KD G Q ++ A G+ F  QT RE+AQGS  +WLHMQ+
Sbjct:   203 LSMKLEAVNSHM--INGIVAFPSKDFGAQPYNTAAGLTFDPQTTREFAQGSTSEWLHMQI 260

Query:   164 GGSFERAT 171
             G ++ER T
Sbjct:   261 GNAYERVT 268

GO:0005634 "nucleus" evidence=IC

TAIR|locus:2172209 AT5G62610 "AT5G62610" [Arabidopsis thaliana (taxid:3702)]

 Score = 461 (167.3 bits), Expect = 1.0e-43, P = 1.0e-43
 Identities = 103/174 (59%), Positives = 115/174 (66%)

Query:     2 KTSGSKNENGS---KAEVEASSAAGNXXXXXXXXXXXX-XDYIHVRARRGQATDSHSLAE 57
             K  GS++ NG    + E E SS  G               DYIHVRARRGQATD HSLAE
Sbjct:   109 KLCGSESGNGDGSMRPEGETSSGGGGSKATEQKNKPEPPKDYIHVRARRGQATDRHSLAE 168

Query:    58 RARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMN 117
             RARREKISE+M  LQD++PGCNK+IGKALVLDEIINYIQSLQRQVEFLSMKLE VNS  +
Sbjct:   169 RARREKISEKMTALQDIIPGCNKIIGKALVLDEIINYIQSLQRQVEFLSMKLEVVNSGAS 228

Query:   118 LTPTIEGFHPKDLGEQAFDATGMIFGSQTAREYAQGSQQDWLHMQVGGSFERAT 171
               PTI  F   DLG    D    I+  Q A E  + SQ +WLHMQV G+F R T
Sbjct:   229 TGPTIGVFPSGDLGTLPIDVHRTIYEQQEANE-TRVSQPEWLHMQVDGNFNRTT 281

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2202867 BPEp "AT1G59640" [Arabidopsis thaliana (taxid:3702)]

 Score = 414 (150.8 bits), Expect = 9.9e-39, P = 9.9e-39
 Identities = 86/93 (92%), Positives = 88/93 (94%)

Query:    38 DYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQS 97
             DYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQS
Sbjct:   132 DYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQS 191

Query:    98 LQRQVEFLSMKLEAVNSRMNLTPTIEGFHPKDL 130
             LQRQVEFLSMKLEAVNSRMN  P IE F PK++
Sbjct:   192 LQRQVEFLSMKLEAVNSRMN--PGIEVFPPKEV 222

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0048446 "petal morphogenesis" evidence=IMP

GO:0009062 "fatty acid catabolic process" evidence=RCA

GO:0009694 "jasmonic acid metabolic process" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

GO:0048441 "petal development" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

UNIPROTKB|Q69JJ6 OSJNBa0026C08.22 "TA1 protein-like" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 366 (133.9 bits), Expect = 1.2e-33, P = 1.2e-33
 Identities = 85/163 (52%), Positives = 100/163 (61%)

Query:     4 SGSKNENGSKAEVEASSAAGNXXXXXXXXXXXXXDYIHVRARRGQATDSHSLAERARREK 63
             S  K E  S A      + G              +YIHVRARRGQAT+SHSLAER RREK
Sbjct:   212 SKDKGEESSPATTNGGKSKGKGAKETSESQKE--EYIHVRARRGQATNSHSLAERLRREK 269

Query:    64 ISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMNLTPTIE 123
             ISERMK+LQDLVPGC+KV GKA++LDEIINY+QSLQRQVEFLSMKL  VN R++L   IE
Sbjct:   270 ISERMKLLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRLDLN--IE 327

Query:   124 GFHPKDLGE-QAFDATGMIFGSQTAREYAQGSQQDWLHMQVGG 165
             G   KDL       ++ + F  +      Q SQ   +H    G
Sbjct:   328 GLLSKDLLRFPGVPSSSIGFSPEMMHPQLQLSQPGLIHGGTAG 370

GO:0005634 "nucleus" evidence=IC

TAIR|locus:2079676 AT3G07340 "AT3G07340" [Arabidopsis thaliana (taxid:3702)]

 Score = 362 (132.5 bits), Expect = 3.2e-33, P = 3.2e-33
 Identities = 72/93 (77%), Positives = 82/93 (88%)

Query:    38 DYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQS 97
             DYIHVRARRGQATDSHSLAER RREKISERMK+LQDLVPGCNKV GKAL+LDEIINY+QS
Sbjct:   254 DYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQS 313

Query:    98 LQRQVEFLSMKLEAVNSRMNLTPTIEGFHPKDL 130
             LQRQVEFLSMKL +VN+R++    ++    KD+
Sbjct:   314 LQRQVEFLSMKLSSVNTRLDFN--MDALLSKDI 344

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

UNIPROTKB|Q5VR96 P0038C05.31-1 "Os06g0275600 protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 360 (131.8 bits), Expect = 5.2e-33, P = 5.2e-33
 Identities = 81/143 (56%), Positives = 93/143 (65%)

Query:     4 SGSKNENGSKAEVEASSAAGNXXXXXXXXXXXXX---DYIHVRARRGQATDSHSLAERAR 60
             S  KNE+  K E + SS A                  DYIHVRARRGQAT+SHSLAER R
Sbjct:   219 SAQKNEDDEKGEPKRSSVASGKSSGKQIKDNAGSPKEDYIHVRARRGQATNSHSLAERVR 278

Query:    61 REKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMNLTP 120
             REKISERMK LQDLVPGC+KV GKA++LDEIINY+QSLQRQVEFLSMKL +VN  ++   
Sbjct:   279 REKISERMKYLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLASVNPTLDFN- 337

Query:   121 TIEGFHPKDLGEQAFDATGMIFG 143
              IE    KD+ +         FG
Sbjct:   338 -IERILSKDIFQCRGTTASSAFG 359

GO:0005634 "nucleus" evidence=IC

UNIPROTKB|Q84QW1 OJ1191_A10.109 "BHLH transcription factor(GBOF-1)-like" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 352 (129.0 bits), Expect = 3.7e-32, P = 3.7e-32
 Identities = 75/121 (61%), Positives = 92/121 (76%)

Query:    38 DYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQS 97
             DY+HVRARRGQATDSHSLAER RRE+IS+RMK+LQDLVPGCNKVIGKAL+LDEIINY+QS
Sbjct:   200 DYVHVRARRGQATDSHSLAERVRRERISQRMKVLQDLVPGCNKVIGKALMLDEIINYVQS 259

Query:    98 LQRQVEFLSMKLEAVNSR--MNLTPTIEGFHPKDLGEQAFDATGMIFGSQTAREYAQGSQ 155
             LQRQVEFLSMKL  VN     NL PT+     KD+ +    +   +F  +++    + ++
Sbjct:   260 LQRQVEFLSMKLATVNPLDFSNL-PTLL---QKDMFQACGPSASSVFSLESSNSAFRFAE 315

Query:   156 Q 156
             Q
Sbjct:   316 Q 316

GO:0005634 "nucleus" evidence=IC

TAIR|locus:2095198 AT3G23690 "AT3G23690" [Arabidopsis thaliana (taxid:3702)]

 Score = 351 (128.6 bits), Expect = 4.7e-32, P = 4.7e-32
 Identities = 77/122 (63%), Positives = 85/122 (69%)

Query:     2 KTSGSKNENGSKAEVEASSAAG-------NXXXXXXXXXXXXXDYIHVRARRGQATDSHS 54
             +  GSK    SK +V  SS  G                     DYIHVRARRGQATDSHS
Sbjct:   144 ENGGSKGGKRSKQDVAGSSKNGVEKCDSKGDNKDDAKPPEAPKDYIHVRARRGQATDSHS 203

Query:    55 LAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNS 114
             LAERARREKISERM +LQDLVPGCN++ GKA++LDEIINY+QSLQRQVEFLSMKL  VN 
Sbjct:   204 LAERARREKISERMTLLQDLVPGCNRITGKAVMLDEIINYVQSLQRQVEFLSMKLATVNP 263

Query:   115 RM 116
             RM
Sbjct:   264 RM 265

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

UNIPROTKB|Q5N802 P0004D12.24 "BHLH transcription factor" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 350 (128.3 bits), Expect = 6.0e-32, P = 6.0e-32
 Identities = 70/110 (63%), Positives = 85/110 (77%)

Query:    38 DYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQS 97
             DYIHVRARRG+ATDSHSLAER RREKIS+RMK+LQDLVPGCNKV+GKA++LDEIINY+QS
Sbjct:   273 DYIHVRARRGEATDSHSLAERVRREKISQRMKLLQDLVPGCNKVVGKAVMLDEIINYVQS 332

Query:    98 LQRQVEFLSMKLEAVNSRMNLTPTIEGFHPKDLGEQAFDATGMIFGSQTA 147
             LQRQVEFLSMKL  VN +++    +     KD+ +         F  +T+
Sbjct:   333 LQRQVEFLSMKLATVNPQLDFN-NLPNLLAKDMHQSCSPLQSSHFPLETS 381

GO:0005634 "nucleus" evidence=IC

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	171
smart00353	53	smart00353, HLH, helix loop helix domain	5e-11
cd00083	60	cd00083, HLH, Helix-loop-helix domain, found in sp	5e-09
pfam00010	52	pfam00010, HLH, Helix-loop-helix DNA-binding domai	3e-08

>gnl|CDD|197674 smart00353, HLH, helix loop helix domain

 Score = 54.9 bits (133), Expect = 5e-11
 Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 2/52 (3%)

Query: 54  SLAERARREKISERMKILQDLVPGC--NKVIGKALVLDEIINYIQSLQRQVE 103
           +  ER RR KI+E    L+ L+P    NK + KA +L   I YI+SLQ +++
Sbjct: 1   NARERRRRRKINEAFDELRSLLPTLPKNKKLSKAEILRLAIEYIKSLQEELQ 52

Length = 53

>gnl|CDD|238036 cd00083, HLH, Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long

 Score = 49.9 bits (120), Expect = 5e-09
 Identities = 20/60 (33%), Positives = 36/60 (60%), Gaps = 2/60 (3%)

Query: 46  RGQATDSHSLAERARREKISERMKILQDLVPGCNKV--IGKALVLDEIINYIQSLQRQVE 103
           R    ++H+L ER RRE+I++    L+ L+P       + KA +L + ++YI+SLQ  ++
Sbjct: 1   RKSRREAHNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELLQ 60

A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and have a PAS domain which allows the dimerization between PAS proteins, the binding of small molecules (e.g., dioxin), and interactions with non-PAS proteins. Length = 60

>gnl|CDD|215654 pfam00010, HLH, Helix-loop-helix DNA-binding domain

 Score = 47.5 bits (114), Expect = 3e-08
 Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 1/49 (2%)

Query: 52 SHSLAERARREKISERMKILQDLVPGCNKV-IGKALVLDEIINYIQSLQ 99
          +H+  ER RR++I++  + L++L+P      + KA +L   I YI+ LQ
Sbjct: 4  AHNERERRRRDRINDAFEELRELLPTPPNKKLSKAEILRLAIEYIKHLQ 52

Length = 52

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	171
cd00083	60	HLH Helix-loop-helix domain, found in specific DNA	99.54
PF00010	55	HLH: Helix-loop-helix DNA-binding domain only nucl	99.51
KOG1318	411	consensus Helix loop helix transcription factor EB	99.47
smart00353	53	HLH helix loop helix domain.	99.47
KOG1319	229	consensus bHLHZip transcription factor BIGMAX [Tra	99.34
KOG4304	250	consensus Transcriptional repressors of the hairy/	98.96
KOG3561	803	consensus Aryl-hydrocarbon receptor nuclear transl	98.7
KOG2483	232	consensus Upstream transcription factor 2/L-myc-2	98.69
KOG2588	953	consensus Predicted DNA-binding protein [Transcrip	98.58
PLN03217	93	transcription factor ATBS1; Provisional	98.36
KOG3960	284	consensus Myogenic helix-loop-helix transcription	98.13
KOG0561	373	consensus bHLH transcription factor [Transcription	98.0
KOG4029	228	consensus Transcription factor HAND2/Transcription	97.81
KOG3582	856	consensus Mlx interactors and related transcriptio	97.62
KOG3910	632	consensus Helix loop helix transcription factor [T	97.04
KOG4447	173	consensus Transcription factor TWIST [Transcriptio	95.22
KOG3559	598	consensus Transcriptional regulator SIM1 [Transcri	92.11
KOG3898	254	consensus Transcription factor NeuroD and related	91.88
KOG3558	768	consensus Hypoxia-inducible factor 1/Neuronal PAS	91.08
KOG3560	712	consensus Aryl-hydrocarbon receptor [Transcription	87.68
KOG4395	285	consensus Transcription factor Atonal, contains HT	87.43
PF09849	247	DUF2076: Uncharacterized protein conserved in bact	83.65

>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long

Probab=99.54  E-value=1.1e-14  Score=96.08  Aligned_cols=55  Identities=36%  Similarity=0.639  Sum_probs=49.3

Q ss_pred             cCccccHHHHHHHHHHHHHHHHHhhcCCCC--CcCcchhhhHHHHHHHHHHHHHHHH
Q 030782           49 ATDSHSLAERARREKISERMKILQDLVPGC--NKVIGKALVLDEIINYIQSLQRQVE  103 (171)
Q Consensus        49 ~~~~h~~~ER~RR~~In~~~~~L~~lvP~~--~k~~~KasiL~~aI~YIk~Lq~~v~  103 (171)
                      .+..|+..||+||++||++|..|+.+||..  ...++|++||+.||+||++|+.+++
T Consensus         4 ~r~~~~~~Er~RR~~~n~~~~~L~~llp~~~~~~k~~k~~iL~~a~~yI~~L~~~~~   60 (60)
T cd00083           4 RREAHNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELLQ   60 (60)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhC
Confidence            456799999999999999999999999998  2445999999999999999998763

A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and

>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt)

Probab=99.51  E-value=1.5e-14  Score=94.78  Aligned_cols=50  Identities=36%  Similarity=0.723  Sum_probs=45.2

Q ss_pred             CccccHHHHHHHHHHHHHHHHHhhcCCCC----CcCcchhhhHHHHHHHHHHHH
Q 030782           50 TDSHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQ   99 (171)
Q Consensus        50 ~~~h~~~ER~RR~~In~~~~~L~~lvP~~----~k~~~KasiL~~aI~YIk~Lq   99 (171)
                      +..|+..||+||++||.+|..|+.+||.+    ...++|++||+.||+||++||
T Consensus         2 R~~h~~~Er~RR~~i~~~~~~L~~llp~~~~~~~~k~~K~~iL~~ai~yI~~Lq   55 (55)
T PF00010_consen    2 RQKHNERERRRRDRINDCFDELRELLPSCSAGSSRKLSKASILQKAIDYIKQLQ   55 (55)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHCCSSHHCCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHhccchhccccccCCHHHHHHHHHHHHHHhC
Confidence            35799999999999999999999999987    233699999999999999997

; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....

>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]

Probab=99.47  E-value=8.9e-14  Score=123.75  Aligned_cols=70  Identities=34%  Similarity=0.566  Sum_probs=60.1

Q ss_pred             CCCcccccccccCCCcCccccHHHHHHHHHHHHHHHHHhhcCCCCCc---CcchhhhHHHHHHHHHHHHHHHH
Q 030782           34 EPPKDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNK---VIGKALVLDEIINYIQSLQRQVE  103 (171)
Q Consensus        34 ~~p~~~~~~r~~r~~~~~~h~~~ER~RR~~In~~~~~L~~lvP~~~k---~~~KasiL~~aI~YIk~Lq~~v~  103 (171)
                      +.++.......|.+++++.||.+||+||++||++|.+|..|||.|+.   .++|..||..+++||+.||+..+
T Consensus       218 t~~~~~~~~~~rdr~Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q  290 (411)
T KOG1318|consen  218 THPKTDATALERDRRKRDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQ  290 (411)
T ss_pred             CCCCcccchhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHH
Confidence            33456666667778888999999999999999999999999999943   26899999999999999987666

>smart00353 HLH helix loop helix domain

Probab=99.47  E-value=1.7e-13  Score=88.62  Aligned_cols=49  Identities=41%  Similarity=0.611  Sum_probs=44.3

Q ss_pred             cHHHHHHHHHHHHHHHHHhhcCCCC---CcCcchhhhHHHHHHHHHHHHHHHH
Q 030782           54 SLAERARREKISERMKILQDLVPGC---NKVIGKALVLDEIINYIQSLQRQVE  103 (171)
Q Consensus        54 ~~~ER~RR~~In~~~~~L~~lvP~~---~k~~~KasiL~~aI~YIk~Lq~~v~  103 (171)
                      +..||+||++||++|..|+.+||.+   .+ ++|++||+.||+||++|+.+++
T Consensus         1 n~~Er~RR~~~n~~~~~L~~lip~~~~~~k-~~k~~iL~~ai~yi~~L~~~~~   52 (53)
T smart00353        1 NARERRRRRKINEAFDELRSLLPTLPNNKK-LSKAEILRLAIEYIKSLQEELQ   52 (53)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-CCHHHHHHHHHHHHHHHHHHHh
Confidence            4689999999999999999999964   34 4999999999999999999875

>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription]

Probab=99.34  E-value=2e-12  Score=104.57  Aligned_cols=70  Identities=29%  Similarity=0.510  Sum_probs=59.2

Q ss_pred             CCcCccccHHHHHHHHHHHHHHHHHhhcCCCCCcC------cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 030782           47 GQATDSHSLAERARREKISERMKILQDLVPGCNKV------IGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRM  116 (171)
Q Consensus        47 ~~~~~~h~~~ER~RR~~In~~~~~L~~lvP~~~k~------~~KasiL~~aI~YIk~Lq~~v~~L~~~~e~~~~~~  116 (171)
                      .+++..|.-+||+||+-||.++..|+.|||.|...      ++||.||+++|+||.+|+.+...-+.++.+|+..+
T Consensus        60 ~rrr~aHtqaEqkRRdAIk~GYddLq~LvP~cq~~ds~g~KlskA~ILqksidyi~~L~~~k~kqe~e~s~L~k~v  135 (229)
T KOG1319|consen   60 DRRRRAHTQAEQKRRDAIKRGYDDLQTLVPTCQQQDSIGQKLSKAIILQKTIDYIQFLHKEKKKQEEEVSTLRKDV  135 (229)
T ss_pred             HHHHHHHHHHHHHHHHHHHhchHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34567899999999999999999999999977322      48999999999999999998887777777666553

>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription]

Probab=98.96  E-value=3e-10  Score=95.91  Aligned_cols=54  Identities=31%  Similarity=0.474  Sum_probs=46.3

Q ss_pred             CccccHHHHHHHHHHHHHHHHHhhcCCCCCc-------CcchhhhHHHHHHHHHHHHHHHH
Q 030782           50 TDSHSLAERARREKISERMKILQDLVPGCNK-------VIGKALVLDEIINYIQSLQRQVE  103 (171)
Q Consensus        50 ~~~h~~~ER~RR~~In~~~~~L~~lvP~~~k-------~~~KasiL~~aI~YIk~Lq~~v~  103 (171)
                      +..|.++|||||++||+++.+|+.||+.+-+       +++||.||+.||+|+++|+....
T Consensus        33 k~~Kpl~EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~~~   93 (250)
T KOG4304|consen   33 KVRKPLLEKKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRSQQ   93 (250)
T ss_pred             hhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhcccc
Confidence            3467899999999999999999999996522       26999999999999999987543

>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription]

Probab=98.70  E-value=1.8e-08  Score=96.38  Aligned_cols=52  Identities=21%  Similarity=0.382  Sum_probs=48.0

Q ss_pred             CccccHHHHHHHHHHHHHHHHHhhcCCCCC---cCcchhhhHHHHHHHHHHHHHH
Q 030782           50 TDSHSLAERARREKISERMKILQDLVPGCN---KVIGKALVLDEIINYIQSLQRQ  101 (171)
Q Consensus        50 ~~~h~~~ER~RR~~In~~~~~L~~lvP~~~---k~~~KasiL~~aI~YIk~Lq~~  101 (171)
                      +++|+.+||+||+++|..|.+|.+|||.|.   -++||-+||.+||.+|+.+++.
T Consensus        21 Re~~~~~EKrRRdq~N~yI~ELs~Mvp~~~~~~RK~DK~tVLr~aV~~lr~~k~~   75 (803)
T KOG3561|consen   21 RENRSEIEKRRRDQMNKYIEELSEMVPTNASLSRKPDKLTVLRMAVDHLRLIKEQ   75 (803)
T ss_pred             cccchhHHHHHHHHHHHHHHHHHHhhhcchhcccCchHHHHHHHHHHHHHHHhhh
Confidence            668999999999999999999999999986   4469999999999999999885

>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]

Probab=98.69  E-value=6.7e-08  Score=80.91  Aligned_cols=61  Identities=26%  Similarity=0.352  Sum_probs=49.6

Q ss_pred             CCCcCccccHHHHHHHHHHHHHHHHHhhcCCCCCcCc--chhhhHHHHHHHHHHHHHHHHHHH
Q 030782           46 RGQATDSHSLAERARREKISERMKILQDLVPGCNKVI--GKALVLDEIINYIQSLQRQVEFLS  106 (171)
Q Consensus        46 r~~~~~~h~~~ER~RR~~In~~~~~L~~lvP~~~k~~--~KasiL~~aI~YIk~Lq~~v~~L~  106 (171)
                      ...++..||..||+||+.|+++|..|+.+||......  ..++||++|++||+.|+.......
T Consensus        56 ~~~~R~~HN~LEk~RRahlk~~~~~Lk~~vP~~~~~~~~t~lsiL~kA~~~i~~l~~~~~~~~  118 (232)
T KOG2483|consen   56 AASSRAHHNALEKRRRAHLKDCFESLKDSVPLLNGETRSTTLSILDKALEHIQSLERKSATQQ  118 (232)
T ss_pred             CCcchhhhhhhhHHHHHHHHHHHHHHHHhCCCCCCcchhhhhHhhhhHHHHHHHHHhHHHHHH
Confidence            3456678999999999999999999999999763321  258999999999999987665333

>KOG2588 consensus Predicted DNA-binding protein [Transcription]

Probab=98.58  E-value=7.1e-08  Score=92.96  Aligned_cols=67  Identities=30%  Similarity=0.534  Sum_probs=57.6

Q ss_pred             CCcCccccHHHHHHHHHHHHHHHHHhhcCCCCCcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030782           47 GQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVN  113 (171)
Q Consensus        47 ~~~~~~h~~~ER~RR~~In~~~~~L~~lvP~~~k~~~KasiL~~aI~YIk~Lq~~v~~L~~~~e~~~  113 (171)
                      +..+.+||++|++.|..||++|.+|+.+||+..-++.|..+|..||+||++|+...+.|....+.+.
T Consensus       274 ~~kRtAHN~IEKRYRsSINDKI~eLk~lV~g~~aKl~kSavLr~ai~~i~dl~~~nq~lk~~~~~l~  340 (953)
T KOG2588|consen  274 GEKRTAHNIIEKRYRSSINDKIIELKDLVPGTEAKLNKSAVLRKAIDYIEDLQGYNQKLKLENASLR  340 (953)
T ss_pred             CcccchhhHHHHHhhcchhHHHHHHHHhcCccHhhhhhhhhHHHHHHHHHHhhccccccchhhhhhh
Confidence            3568899999999999999999999999998854459999999999999999998887766554443

>PLN03217 transcription factor ATBS1; Provisional

Probab=98.36  E-value=1.6e-06  Score=62.18  Aligned_cols=56  Identities=30%  Similarity=0.483  Sum_probs=46.9

Q ss_pred             HHHHHHHHHHHHhhcCCCCCc-----CcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030782           60 RREKISERMKILQDLVPGCNK-----VIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSR  115 (171)
Q Consensus        60 RR~~In~~~~~L~~lvP~~~k-----~~~KasiL~~aI~YIk~Lq~~v~~L~~~~e~~~~~  115 (171)
                      --+.|++.+..|+.|+|....     ..+-+-||++|+.||+.|+.+|..|.+.+.+|-..
T Consensus        18 sddqi~dLvsKLq~llPe~r~~r~s~k~saskvLqEtC~YIrsLhrEvDdLSerLs~LL~t   78 (93)
T PLN03217         18 SEDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHREVDDLSERLSELLAN   78 (93)
T ss_pred             CHHHHHHHHHHHHHHChHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            358999999999999996421     23677899999999999999999999988777544

>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]

Probab=98.13  E-value=2.1e-05  Score=66.56  Aligned_cols=56  Identities=25%  Similarity=0.354  Sum_probs=49.4

Q ss_pred             cccHHHHHHHHHHHHHHHHHhh-cCCCCCcCcchhhhHHHHHHHHHHHHHHHHHHHH
Q 030782           52 SHSLAERARREKISERMKILQD-LVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSM  107 (171)
Q Consensus        52 ~h~~~ER~RR~~In~~~~~L~~-lvP~~~k~~~KasiL~~aI~YIk~Lq~~v~~L~~  107 (171)
                      +-.+.||+|=.|+|+.|.+|+. -+++.+..+-|..||..||+||..||.-++++..
T Consensus       121 AATMRERRRLkKVNEAFE~LKRrT~~NPNQRLPKVEILRsAI~YIE~Lq~LL~~~~~  177 (284)
T KOG3960|consen  121 AATMRERRRLKKVNEAFETLKRRTSSNPNQRLPKVEILRSAIRYIERLQALLQEQDQ  177 (284)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCCccccccHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            4567899999999999999954 6777787789999999999999999999988765

>KOG0561 consensus bHLH transcription factor [Transcription]

Probab=98.00  E-value=4.3e-06  Score=72.39  Aligned_cols=54  Identities=28%  Similarity=0.431  Sum_probs=46.0

Q ss_pred             ccccHHHHHHHHHHHHHHHHHhhcCCCC--CcCcchhhhHHHHHHHHHHHHHHHHHH
Q 030782           51 DSHSLAERARREKISERMKILQDLVPGC--NKVIGKALVLDEIINYIQSLQRQVEFL  105 (171)
Q Consensus        51 ~~h~~~ER~RR~~In~~~~~L~~lvP~~--~k~~~KasiL~~aI~YIk~Lq~~v~~L  105 (171)
                      +--|..||+|=.-||-+|..||.|+|--  .|. +||.||+.+.+||.+|+.+.-+|
T Consensus        62 eIANsNERRRMQSINAGFqsLr~LlPr~eGEKL-SKAAILQQTa~yI~~Le~~Kt~l  117 (373)
T KOG0561|consen   62 EIANSNERRRMQSINAGFQSLRALLPRKEGEKL-SKAAILQQTADYIHQLEGHKTEL  117 (373)
T ss_pred             HhhcchHHHHHHhhhHHHHHHHHhcCcccchhh-HHHHHHHHHHHHHHHHHhccccc
Confidence            3467789999999999999999999964  554 99999999999999998755443

>KOG4029 consensus Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 [Transcription]

Probab=97.81  E-value=2e-05  Score=65.41  Aligned_cols=60  Identities=20%  Similarity=0.284  Sum_probs=51.0

Q ss_pred             CcCccccHHHHHHHHHHHHHHHHHhhcCCCC---CcCcchhhhHHHHHHHHHHHHHHHHHHHH
Q 030782           48 QATDSHSLAERARREKISERMKILQDLVPGC---NKVIGKALVLDEIINYIQSLQRQVEFLSM  107 (171)
Q Consensus        48 ~~~~~h~~~ER~RR~~In~~~~~L~~lvP~~---~k~~~KasiL~~aI~YIk~Lq~~v~~L~~  107 (171)
                      ..+..+|..||.|=..+|..|..||.+||..   .|+++|..+|..||.||++|+.-++.-..
T Consensus       108 ~~~~~~n~RER~Rv~~vN~~f~~Lr~~lP~~~~~~kklSKveTLr~A~~YI~~L~~lL~~~~~  170 (228)
T KOG4029|consen  108 AQRQARNARERQRVQSVNSAFAELRALLPTEPPQSKKLSKVETLRLATSYIRYLTKLLATQEA  170 (228)
T ss_pred             hhhhhhhhhhhhcccchhhhhHHHHhcCCCCCCcccccCcccchHHHHHHHHHHHHHhccccc
Confidence            3445678889999999999999999999953   45579999999999999999988876553

>KOG3582 consensus Mlx interactors and related transcription factors [Transcription]

Probab=97.62  E-value=4.3e-05  Score=72.22  Aligned_cols=86  Identities=21%  Similarity=0.254  Sum_probs=66.3

Q ss_pred             CcCccccHHHHHHHHHHHHHHHHHhhcCCCCCcC----cchhhhHHHHHHHHHHHHHHH-------HHHHHHHHHHhccc
Q 030782           48 QATDSHSLAERARREKISERMKILQDLVPGCNKV----IGKALVLDEIINYIQSLQRQV-------EFLSMKLEAVNSRM  116 (171)
Q Consensus        48 ~~~~~h~~~ER~RR~~In~~~~~L~~lvP~~~k~----~~KasiL~~aI~YIk~Lq~~v-------~~L~~~~e~~~~~~  116 (171)
                      .....|+.+|.+||++|+-+|..|.+++.+....    +.++.-|+++++||..++.+.       ..|..+.+.++.-+
T Consensus       650 ~r~it~~Sa~qkrr~n~kl~~~~~Ns~~Sn~~~l~s~k~t~~~~~q~~vhYi~~t~~e~~~v~~e~~~lr~~~s~~~A~~  729 (856)
T KOG3582|consen  650 NRPITHISAEQKRRFNIKLQFDVLNSLSSNSSSLSSIKTTNSNSLQKTVHYINVTQQERVPVQEEAHSLRKEISELNAVI  729 (856)
T ss_pred             CCcccCccHHHHHHhhHHhhhHhhhhhccCcccccchhhhccccccCceeeeeccchhccccchhhhhhhhhhHHHHHHH
Confidence            4567899999999999999999999999876443    467777999999996665544       45555666666655


Q ss_pred             cCCCCccCCCCCCCCcCCCCCCCccccCC
Q 030782          117 NLTPTIEGFHPKDLGEQAFDATGMIFGSQ  145 (171)
Q Consensus       117 ~~~p~~~~~~~~~~~~~~~~~~g~~~~~~  145 (171)
                      +            .|+++.+++|++....
T Consensus       730 ~------------~~~q~p~aT~vp~~r~  746 (856)
T KOG3582|consen  730 S------------ACQQPPPATGVPGTRL  746 (856)
T ss_pred             H------------HhhcCCCccCCcchhh
Confidence            4            5788888888887765

>KOG3910 consensus Helix loop helix transcription factor [Transcription]

Probab=97.04  E-value=0.00091  Score=61.48  Aligned_cols=60  Identities=27%  Similarity=0.266  Sum_probs=49.1

Q ss_pred             cCCCcCccccHHHHHHHHHHHHHHHHHhhcCCC---CCcCcchhhhHHHHHHHHHHHHHHHHH
Q 030782           45 RRGQATDSHSLAERARREKISERMKILQDLVPG---CNKVIGKALVLDEIINYIQSLQRQVEF  104 (171)
Q Consensus        45 ~r~~~~~~h~~~ER~RR~~In~~~~~L~~lvP~---~~k~~~KasiL~~aI~YIk~Lq~~v~~  104 (171)
                      |.+.++...|..||-|-..||+.|++|..|.--   ..|.-.|.-||-.||.-|-.|++||++
T Consensus       522 REkERR~aNNARERlRVRDINeAfKELGRMCqlHlkSeKpQTKLgILhqAVsVIlsLEQQVRE  584 (632)
T KOG3910|consen  522 REKERRMANNARERLRVRDINEAFKELGRMCQLHLKSEKPQTKLGILHQAVSVILSLEQQVRE  584 (632)
T ss_pred             HHHHHHhhhhhhhheehhhHHHHHHHHHHHHHHhhcccCcchhhhHHHHHHHHHHHHHHHHHH
Confidence            334556778999999999999999999988742   222237899999999999999999984

>KOG4447 consensus Transcription factor TWIST [Transcription]

Probab=95.22  E-value=0.011  Score=46.97  Aligned_cols=52  Identities=21%  Similarity=0.332  Sum_probs=44.7

Q ss_pred             CccccHHHHHHHHHHHHHHHHHhhcCCCC-CcCcchhhhHHHHHHHHHHHHHH
Q 030782           50 TDSHSLAERARREKISERMKILQDLVPGC-NKVIGKALVLDEIINYIQSLQRQ  101 (171)
Q Consensus        50 ~~~h~~~ER~RR~~In~~~~~L~~lvP~~-~k~~~KasiL~~aI~YIk~Lq~~  101 (171)
                      +.-|++-||+|=..+|+.|..||.+||.. ....+|.-.|+-|..||-+|=+-
T Consensus        79 rv~anvrerqRtqsLn~AF~~lr~iiptlPsdklSkiqtLklA~ryidfl~~v  131 (173)
T KOG4447|consen   79 RVMANVRERQRTQSLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFLYQV  131 (173)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHhhcCCCCccccccccchhhcccCCchhhhc
Confidence            35699999999999999999999999975 33349999999999999988543

>KOG3559 consensus Transcriptional regulator SIM1 [Transcription]

Probab=92.11  E-value=0.16  Score=46.36  Aligned_cols=44  Identities=27%  Similarity=0.334  Sum_probs=37.8

Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCCC---CcCcchhhhHHHHHHHHHHH
Q 030782           55 LAERARREKISERMKILQDLVPGC---NKVIGKALVLDEIINYIQSL   98 (171)
Q Consensus        55 ~~ER~RR~~In~~~~~L~~lvP~~---~k~~~KasiL~~aI~YIk~L   98 (171)
                      .+.|.||++-|..|.+|..++|-.   +..+||++|+.-|..|||.-
T Consensus         7 naA~tRRekEN~EF~eLAklLPLa~AItsQlDKasiiRLtTsYlKmr   53 (598)
T KOG3559|consen    7 NAARTRREKENYEFYELAKLLPLASAITSQLDKASIIRLTTSYLKMR   53 (598)
T ss_pred             hHHHHHHHhhcchHHHHHhhccchhhhhhccchhhhhhHHHHHHHHH
Confidence            568999999999999999999943   33369999999999999853

>KOG3898 consensus Transcription factor NeuroD and related HTH proteins [Transcription]

Probab=91.88  E-value=0.22  Score=42.35  Aligned_cols=50  Identities=24%  Similarity=0.380  Sum_probs=41.7

Q ss_pred             ccccHHHHHHHHHHHHHHHHHhhcCCCC---CcCcchhhhHHHHHHHHHHHHHH
Q 030782           51 DSHSLAERARREKISERMKILQDLVPGC---NKVIGKALVLDEIINYIQSLQRQ  101 (171)
Q Consensus        51 ~~h~~~ER~RR~~In~~~~~L~~lvP~~---~k~~~KasiL~~aI~YIk~Lq~~  101 (171)
                      ..-|.-||+|=-.+|+.|..||.+||..   .+ +.|+.+|.-|-+||..|++-
T Consensus        74 ~kaNaRER~RMH~LNdAld~LReviP~~~~~~k-lskIetl~~a~~yi~als~~  126 (254)
T KOG3898|consen   74 LKANARERTRMHDLNDALDALREVIPHGLHPPK-LSKIETLRLAANYIAALSEV  126 (254)
T ss_pred             ccccchhhccccchhHHHHHhHhhccCcCCCCC-CCcchhHHhhhcchhhhccc
Confidence            3456679999999999999999999943   34 49999999999999988754

>KOG3558 consensus Hypoxia-inducible factor 1/Neuronal PAS domain protein NPAS1 [Signal transduction mechanisms; Transcription]

Probab=91.08  E-value=0.18  Score=48.43  Aligned_cols=43  Identities=30%  Similarity=0.379  Sum_probs=36.8

Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCCC---CcCcchhhhHHHHHHHHHH
Q 030782           55 LAERARREKISERMKILQDLVPGC---NKVIGKALVLDEIINYIQS   97 (171)
Q Consensus        55 ~~ER~RR~~In~~~~~L~~lvP~~---~k~~~KasiL~~aI~YIk~   97 (171)
                      -+.|.||-|-|+-|-+|..+||-.   ...+|||+|+.-||-|++-
T Consensus        52 dAARsRRsKEn~~FyeLa~~lPlp~aisshLDkaSimRLtISyLRl   97 (768)
T KOG3558|consen   52 DAARSRRSKENEEFYELAKLLPLPAAISSHLDKASIMRLTISYLRL   97 (768)
T ss_pred             hhhhhhcccchHHHHHHHHhCCCcchhhhhhhhHHHHHHHHHHHHH
Confidence            578999999999999999999832   2336999999999999963

>KOG3560 consensus Aryl-hydrocarbon receptor [Transcription]

Probab=87.68  E-value=0.46  Score=44.77  Aligned_cols=38  Identities=24%  Similarity=0.456  Sum_probs=33.0

Q ss_pred             HHHHHHHHHHHHHHhhcCCCC----CcCcchhhhHHHHHHHHH
Q 030782           58 RARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQ   96 (171)
Q Consensus        58 R~RR~~In~~~~~L~~lvP~~----~k~~~KasiL~~aI~YIk   96 (171)
                      ++-|+++|..++.|.+|+|-.    +|. ||.+||.-+|-|++
T Consensus        34 KRHRdRLNaELD~lAsLLPfpqdiisKL-DkLSVLRLSVSyLr   75 (712)
T KOG3560|consen   34 KRHRDRLNAELDHLASLLPFPQDIISKL-DKLSVLRLSVSYLR   75 (712)
T ss_pred             hhHHHHhhhHHHHHHHhcCCCHHHHhhh-hhhhhhhhhHHHHH
Confidence            455899999999999999953    665 99999999999984

>KOG4395 consensus Transcription factor Atonal, contains HTH domain [Transcription]

Probab=87.43  E-value=1  Score=38.63  Aligned_cols=52  Identities=23%  Similarity=0.296  Sum_probs=43.3

Q ss_pred             cccHHHHHHHHHHHHHHHHHhhcCCCC--CcCcchhhhHHHHHHHHHHHHHHHH
Q 030782           52 SHSLAERARREKISERMKILQDLVPGC--NKVIGKALVLDEIINYIQSLQRQVE  103 (171)
Q Consensus        52 ~h~~~ER~RR~~In~~~~~L~~lvP~~--~k~~~KasiL~~aI~YIk~Lq~~v~  103 (171)
                      +-+..||+|=..+|..|+.|+..||..  .+.++|-..|+.|-.||--|-..+.
T Consensus       177 aanarErrrm~gLN~AfD~Lr~v~p~~~~d~~LSkyetLqmaq~yi~~l~~~l~  230 (285)
T KOG4395|consen  177 AANARERRRMNGLNSAFDRLRLVVPDGDSDKKLSKYETLQMAQGYILALGCLLD  230 (285)
T ss_pred             ccchHHHHHhhhHHHHHHHHHHhcCCCCccchhhhhhHHHHHHHHHhhhHHhhc
Confidence            567889999999999999999999965  2335899999999999987765543

>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins

Probab=83.65  E-value=12  Score=31.81  Aligned_cols=34  Identities=15%  Similarity=0.254  Sum_probs=21.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhccccCCCCccCCCCCCC
Q 030782           95 IQSLQRQVEFLSMKLEAVNSRMNLTPTIEGFHPKDL  130 (171)
Q Consensus        95 Ik~Lq~~v~~L~~~~e~~~~~~~~~p~~~~~~~~~~  130 (171)
                      ||.|+.+|++|+.++.+....-.  +....|....+
T Consensus        57 L~~a~~ri~eLe~ql~q~~~~~~--~~~ggFL~~lf   90 (247)
T PF09849_consen   57 LKQAQARIQELEAQLQQAQAPQA--QSSGGFLSGLF   90 (247)
T ss_pred             HHHHHHHHHHHHHHHHhhccccC--CCCCcchhhhc
Confidence            68889999999988876433221  23445544433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	171
4ati_A	118	Mitf:m-Box Complex Length = 118		4e-04

>pdb|4ATI|A Chain A, Mitf:m-Box Complex Length = 118

Iteration: 1
 Score = 40.4 bits (93), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 43/84 (51%), Gaps = 9/84 (10%)
Query: 44  ARRGQATDSHSLAERARREKISERMKILQDLVPGCNKV---IGKALVLDEIINYIQSLQR 100
           A+  Q  D+H+L ER RR  I++R+K L  L+P  N       K  +L   ++YI+ LQR
Sbjct: 22  AKERQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQR 81
Query: 101 Q------VEFLSMKLEAVNSRMNL 118
           +      +E    KLE  N  + L
Sbjct: 82  EQQRAKDLENRQKKLEHANRHLLL 105

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	171
1am9_A	82	Srebp-1A, protein (sterol regulatory element bindi	1e-19
1an4_A	65	Protein (upstream stimulatory factor); protein-DNA	9e-10
1nkp_B	83	MAX protein, MYC proto-oncogene protein; transcrip	2e-08
1hlo_A	80	Protein (transcription factor MAX); transcriptiona	2e-08
1nkp_A	88	C-MYC, MYC proto-oncogene protein; transcription,	9e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-07
4f3l_A	361	Mclock, circadian locomoter output cycles protein	4e-06
1a0a_A	63	BHLH, protein (phosphate system positive regulator	8e-05
4f3l_B	387	BMAL1B; BHLH, PAS, circadian rhythm proteins, tran	2e-04

>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C Length = 82

 Score = 77.4 bits (191), Expect = 1e-19
 Identities = 20/73 (27%), Positives = 41/73 (56%)

Query: 45  RRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEF 104
            RG+   +H+  E+  R  I++++  L+DLV G    + K+ VL + I+YI+ LQ   + 
Sbjct: 2   SRGEKRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQK 61

Query: 105 LSMKLEAVNSRMN 117
           L  +  ++ + ++
Sbjct: 62  LKQENLSLRTAVH 74

>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1 Length = 65

 Score = 51.2 bits (123), Expect = 9e-10
 Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 5/58 (8%)

Query: 51  DSHSLAERARREKISERMKILQDLVPGCNKVIG-----KALVLDEIINYIQSLQRQVE 103
             H+  ER RR+KI+  +  L  ++P  +         K  +L +  +YIQ L++   
Sbjct: 7   AQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSNH 64

>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B Length = 83

 Score = 48.1 bits (115), Expect = 2e-08
 Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 1/62 (1%)

Query: 51  DSHSLAERARREKISERMKILQDLVPGCNKV-IGKALVLDEIINYIQSLQRQVEFLSMKL 109
             H+  ER RR+ I +    L+D VP        +A +LD+   YIQ ++R+       +
Sbjct: 4   AHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDI 63

Query: 110 EA 111
           + 
Sbjct: 64  DD 65

>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1 Length = 80

 Score = 48.1 bits (115), Expect = 2e-08
 Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 1/62 (1%)

Query: 51  DSHSLAERARREKISERMKILQDLVPGCNKV-IGKALVLDEIINYIQSLQRQVEFLSMKL 109
             H+  ER RR+ I +    L+D VP        +A +LD+   YIQ ++R+       +
Sbjct: 14  AHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDI 73

Query: 110 EA 111
           + 
Sbjct: 74  DD 75

>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 Length = 88

 Score = 46.6 bits (111), Expect = 9e-08
 Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 2/68 (2%)

Query: 52  SHSLAERARREKISERMKILQDLVPGC--NKVIGKALVLDEIINYIQSLQRQVEFLSMKL 109
           +H++ ER RR ++      L+D +P    N+   K ++L +   YI S+Q + + L  + 
Sbjct: 9   THNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEE 68

Query: 110 EAVNSRMN 117
           + +  R  
Sbjct: 69  DLLRKRRE 76

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.2 bits (111), Expect = 8e-07
 Identities = 32/204 (15%), Positives = 58/204 (28%), Gaps = 71/204 (34%)

Query: 6   SKNENGSKAEVEASSAAGNKP-------AESSKPSEPPKDYIHVRARRGQATDSHSLAER 58
           SK E   +  VE      N          E  +PS   + YI  R R     D+   A+ 
Sbjct: 73  SKQEEMVQKFVE-EVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDR--LYNDNQVFAKY 129

Query: 59  --ARREKISERMKILQDLVPGCNKVI------GK----ALVL------------------ 88
             +R +   +  + L +L P  N +I      GK      V                   
Sbjct: 130 NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNL 189

Query: 89  ------DEIINYIQSLQRQVE--FLSMKLEAVNSRMNLTPTIEGF--------HPKDL-- 130
                 + ++  +Q L  Q++  + S    + N ++ +               +   L  
Sbjct: 190 KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV 249

Query: 131 ------GE--QAFDATGMIFGSQT 146
                  +   AF+        + 
Sbjct: 250 LLNVQNAKAWNAFN-----LSCKI 268

>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus} Length = 361

 Score = 44.6 bits (105), Expect = 4e-06
 Identities = 24/121 (19%), Positives = 55/121 (45%), Gaps = 13/121 (10%)

Query: 52  SHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEA 111
           S + +E+ RR++ +  +K L  ++PG  + + K+ VL + I+++    R+ +  + + +A
Sbjct: 15  SRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFL----RKHKETTAQSDA 70

Query: 112 VNSRMNLTPT-IEGFHPKDLGEQAFD-------ATG-MIFGSQTAREYAQGSQQDWLHMQ 162
              R +  PT +       L  +A D         G +I+ S++     +    D +   
Sbjct: 71  SEIRQDWKPTFLSNEEFTQLMLEALDGFFLAIMTDGSIIYVSESVTSLLEHLPSDLVDQS 130

Query: 163 V 163
           +
Sbjct: 131 I 131

>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1 Length = 63

 Score = 37.9 bits (88), Expect = 8e-05
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 6/58 (10%)

Query: 52  SHSLAERARREKISERMKILQDLVPGCNK------VIGKALVLDEIINYIQSLQRQVE 103
           SH  AE+ARR +++  +  L  L+P   K         KA  ++    YI+ LQ+   
Sbjct: 5   SHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNGS 62

>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus} Length = 387

 Score = 39.6 bits (92), Expect = 2e-04
 Identities = 25/124 (20%), Positives = 47/124 (37%), Gaps = 19/124 (15%)

Query: 52  SHSLAERARREKISERMKILQDLVPGCNKVIG---KALVLDEIINYIQSLQRQVEFLSMK 108
           +HS  E+ RR+K++  +  L  LVP CN +     K  VL   + ++    + +   +  
Sbjct: 16  AHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHM----KTLRGAT-- 69

Query: 109 LEAVNSRMNLTPTIEGFHPKDLGEQAFDA--------TG-MIFGSQTAREYAQGSQQDWL 159
                        +     K L  +A D          G ++F S++  +    SQ D +
Sbjct: 70  -NPYTEANYKPTFLSDDELKHLILRAADGFLFVVGCDRGKILFVSESVFKILNYSQNDLI 128

Query: 160 HMQV 163
              +
Sbjct: 129 GQSL 132

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	171
1am9_A	82	Srebp-1A, protein (sterol regulatory element bindi	99.78
4ati_A	118	MITF, microphthalmia-associated transcription fact	99.74
4h10_B	71	Circadian locomoter output cycles protein kaput; B	99.7
1a0a_A	63	BHLH, protein (phosphate system positive regulator	99.69
1an4_A	65	Protein (upstream stimulatory factor); protein-DNA	99.68
1hlo_A	80	Protein (transcription factor MAX); transcriptiona	99.68
1nkp_B	83	MAX protein, MYC proto-oncogene protein; transcrip	99.67
1nkp_A	88	C-MYC, MYC proto-oncogene protein; transcription,	99.64
4h10_A	73	ARYL hydrocarbon receptor nuclear translocator-LI	99.62
1nlw_A	80	MAD protein, MAX dimerizer; transcription factor,	99.6
3u5v_A	76	Protein MAX, transcription factor E2-alpha chimer;	99.57
1mdy_A	68	Protein (MYOD BHLH domain); protein-DNA complex, t	99.32
2ql2_B	60	Neurod1, neurogenic differentiation factor 1; basi	99.28
4f3l_A	361	Mclock, circadian locomoter output cycles protein	99.17
4ath_A	83	MITF, microphthalmia-associated transcription fact	99.16
4f3l_B	387	BMAL1B; BHLH, PAS, circadian rhythm proteins, tran	99.07
2lfh_A	68	DNA-binding protein inhibitor ID-3; structural gen	98.91
4aya_A	97	DNA-binding protein inhibitor ID-2; cell cycle; 2.	98.54

>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C

Probab=99.78  E-value=1e-19  Score=128.44  Aligned_cols=69  Identities=26%  Similarity=0.403  Sum_probs=62.6

Q ss_pred             CcCccccHHHHHHHHHHHHHHHHHhhcCCCCCcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 030782           48 QATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRM  116 (171)
Q Consensus        48 ~~~~~h~~~ER~RR~~In~~~~~L~~lvP~~~k~~~KasiL~~aI~YIk~Lq~~v~~L~~~~e~~~~~~  116 (171)
                      ..+.+|+.+||+||++||++|..|++|||++...+|||+||++||+||++|+.+++.|+.+++.|...+
T Consensus         5 ~rr~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~~~   73 (82)
T 1am9_A            5 EKRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRTAV   73 (82)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345689999999999999999999999999844459999999999999999999999999998887655

>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A

Probab=99.74  E-value=3.2e-18  Score=128.39  Aligned_cols=71  Identities=32%  Similarity=0.451  Sum_probs=51.1

Q ss_pred             ccccccccCCCcCccccHHHHHHHHHHHHHHHHHhhcCCCCCc---CcchhhhHHHHHHHHHHHHHHHHHHHHH
Q 030782           38 DYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNK---VIGKALVLDEIINYIQSLQRQVEFLSMK  108 (171)
Q Consensus        38 ~~~~~r~~r~~~~~~h~~~ER~RR~~In~~~~~L~~lvP~~~k---~~~KasiL~~aI~YIk~Lq~~v~~L~~~  108 (171)
                      +......++.+.+.+|+.+||+||++||++|..|++|||++.+   .++|++||++||+||++||.+++.|...
T Consensus        16 ~~~~~~~k~~~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~   89 (118)
T 4ati_A           16 SEARALAKERQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDL   89 (118)
T ss_dssp             ---------------CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5566677888889999999999999999999999999998853   3589999999999999999999999864

>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}

Probab=99.70  E-value=5.9e-18  Score=116.64  Aligned_cols=60  Identities=22%  Similarity=0.414  Sum_probs=53.6

Q ss_pred             CCcCccccHHHHHHHHHHHHHHHHHhhcCCCCCcCcchhhhHHHHHHHHHHHHHHHHHHH
Q 030782           47 GQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLS  106 (171)
Q Consensus        47 ~~~~~~h~~~ER~RR~~In~~~~~L~~lvP~~~k~~~KasiL~~aI~YIk~Lq~~v~~L~  106 (171)
                      ...+.+|+.+||+||++||++|.+|++|||++...+||++||++||+||++||.++..|+
T Consensus         6 ~~kR~~Hn~iErrRRd~IN~~i~eL~~LvP~~~~K~dK~sIL~~aI~yik~Lq~~~~~~~   65 (71)
T 4h10_B            6 KAKRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKEITAWLE   65 (71)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCSCCCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             hHHhhhhhHHHhhHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhhhHHH
Confidence            345678999999999999999999999999865445999999999999999999998775

>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1

Probab=99.69  E-value=4.7e-18  Score=114.59  Aligned_cols=55  Identities=29%  Similarity=0.425  Sum_probs=48.3

Q ss_pred             cCccccHHHHHHHHHHHHHHHHHhhcCCCCC------cCcchhhhHHHHHHHHHHHHHHHH
Q 030782           49 ATDSHSLAERARREKISERMKILQDLVPGCN------KVIGKALVLDEIINYIQSLQRQVE  103 (171)
Q Consensus        49 ~~~~h~~~ER~RR~~In~~~~~L~~lvP~~~------k~~~KasiL~~aI~YIk~Lq~~v~  103 (171)
                      .+.+|+++||+||++||.+|..|++|||.+.      ..++||+||+.||+||++||++++
T Consensus         2 kr~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~~   62 (63)
T 1a0a_A            2 KRESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNGS   62 (63)
T ss_dssp             CTTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCSC
T ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHhh
Confidence            3578999999999999999999999999652      224899999999999999998763

>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1

Probab=99.68  E-value=1.2e-17  Score=112.72  Aligned_cols=57  Identities=26%  Similarity=0.416  Sum_probs=50.4

Q ss_pred             CCcCccccHHHHHHHHHHHHHHHHHhhcCCCCCc-----CcchhhhHHHHHHHHHHHHHHHH
Q 030782           47 GQATDSHSLAERARREKISERMKILQDLVPGCNK-----VIGKALVLDEIINYIQSLQRQVE  103 (171)
Q Consensus        47 ~~~~~~h~~~ER~RR~~In~~~~~L~~lvP~~~k-----~~~KasiL~~aI~YIk~Lq~~v~  103 (171)
                      ...+.+|+.+||+||++||++|..|++|||.+..     .++|++||++||+||++||.+++
T Consensus         3 ~~rr~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~~   64 (65)
T 1an4_A            3 EKRRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSNH   64 (65)
T ss_dssp             CCCCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTTC
T ss_pred             HHHHHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHhc
Confidence            3456789999999999999999999999998852     35999999999999999998753

>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1

Probab=99.68  E-value=3.3e-17  Score=114.85  Aligned_cols=65  Identities=28%  Similarity=0.479  Sum_probs=59.3

Q ss_pred             cCccccHHHHHHHHHHHHHHHHHhhcCCCC--CcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030782           49 ATDSHSLAERARREKISERMKILQDLVPGC--NKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNS  114 (171)
Q Consensus        49 ~~~~h~~~ER~RR~~In~~~~~L~~lvP~~--~k~~~KasiL~~aI~YIk~Lq~~v~~L~~~~e~~~~  114 (171)
                      .+..|+..||+||..||++|..|+++||.+  .| ++|++||..||+||++|+.+++.|+.+++.|..
T Consensus        12 ~R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k-~sK~~iL~~Ai~YI~~L~~~~~~L~~e~~~L~~   78 (80)
T 1hlo_A           12 KRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEK-ASRAQILDKATEYIQYMRRKNHTHQQDIDDLKR   78 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSGGGTTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHCcCCCCCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            456899999999999999999999999986  35 599999999999999999999999999887753

>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B

Probab=99.67  E-value=5.5e-17  Score=114.25  Aligned_cols=64  Identities=28%  Similarity=0.488  Sum_probs=56.5

Q ss_pred             CccccHHHHHHHHHHHHHHHHHhhcCCCC--CcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030782           50 TDSHSLAERARREKISERMKILQDLVPGC--NKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNS  114 (171)
Q Consensus        50 ~~~h~~~ER~RR~~In~~~~~L~~lvP~~--~k~~~KasiL~~aI~YIk~Lq~~v~~L~~~~e~~~~  114 (171)
                      +..|+..||+||+.||++|..|+++||.+  .| ++|++||..||+||++|+.+++.|+.+++.+..
T Consensus         3 R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k-~sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~L~~   68 (83)
T 1nkp_B            3 RAHHNALERKRRDHIKDSFHSLRDSVPSLQGEK-ASRAQILDKATEYIQYMRRKNHTHQQDIDDLKR   68 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHhhhHHHHHHHHHHHHHHHHHHHCCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45799999999999999999999999985  45 599999999999999999988888877666544

>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1

Probab=99.64  E-value=2.4e-16  Score=112.60  Aligned_cols=63  Identities=24%  Similarity=0.387  Sum_probs=54.4

Q ss_pred             CccccHHHHHHHHHHHHHHHHHhhcCCCCC--cCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030782           50 TDSHSLAERARREKISERMKILQDLVPGCN--KVIGKALVLDEIINYIQSLQRQVEFLSMKLEAV  112 (171)
Q Consensus        50 ~~~h~~~ER~RR~~In~~~~~L~~lvP~~~--k~~~KasiL~~aI~YIk~Lq~~v~~L~~~~e~~  112 (171)
                      +..|+.+||+||++||++|..|+.+||.+.  .+++|++||.+||+||++|+.+.+.|..+++.+
T Consensus         7 R~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~~~~~L   71 (88)
T 1nkp_A            7 RRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEEDLL   71 (88)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            457999999999999999999999999763  335999999999999999999988876655444

>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}

Probab=99.62  E-value=5e-17  Score=112.57  Aligned_cols=55  Identities=33%  Similarity=0.535  Sum_probs=48.8

Q ss_pred             cCCCcCccccHHHHHHHHHHHHHHHHHhhcCCCC----CcCcchhhhHHHHHHHHHHHHH
Q 030782           45 RRGQATDSHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQR  100 (171)
Q Consensus        45 ~r~~~~~~h~~~ER~RR~~In~~~~~L~~lvP~~----~k~~~KasiL~~aI~YIk~Lq~  100 (171)
                      +..+.+.+|+.+||+||++||++|.+|+.|||.|    .| +|||+||+.||+||+.|+.
T Consensus         5 k~~~rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~K-ldKasIL~~tV~ylk~l~~   63 (73)
T 4h10_A            5 RIKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRK-LDKLTVLRMAVQHMKTLRG   63 (73)
T ss_dssp             CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSC-CCHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHhcchHHHHHHHHHHHHHHHHHHHcccccccccc-ccHHHHHHHHHHHHHHHhc
Confidence            4455667899999999999999999999999987    45 4999999999999999974

>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1

Probab=99.60  E-value=1.5e-15  Score=106.71  Aligned_cols=66  Identities=17%  Similarity=0.193  Sum_probs=57.1

Q ss_pred             CccccHHHHHHHHHHHHHHHHHhhcCCCCC--cCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030782           50 TDSHSLAERARREKISERMKILQDLVPGCN--KVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSR  115 (171)
Q Consensus        50 ~~~h~~~ER~RR~~In~~~~~L~~lvP~~~--k~~~KasiL~~aI~YIk~Lq~~v~~L~~~~e~~~~~  115 (171)
                      +..||..||+||..||++|..|+++||.+.  ...+|+.||.+|++||++|+.+.+.|..+++.+...
T Consensus         2 R~~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~l~~e~~~L~~e   69 (80)
T 1nlw_A            2 RSTHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQIDQLQRE   69 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            457999999999999999999999999652  235999999999999999999999888877766543

>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*

Probab=99.57  E-value=1.4e-15  Score=106.06  Aligned_cols=58  Identities=28%  Similarity=0.363  Sum_probs=48.6

Q ss_pred             cCccccHHHHHHHHHHHHHHHHHhhcCCCC---CcCcchhhhHHHHHHHHHHHHHHHHHHH
Q 030782           49 ATDSHSLAERARREKISERMKILQDLVPGC---NKVIGKALVLDEIINYIQSLQRQVEFLS  106 (171)
Q Consensus        49 ~~~~h~~~ER~RR~~In~~~~~L~~lvP~~---~k~~~KasiL~~aI~YIk~Lq~~v~~L~  106 (171)
                      .+..||..||+||..||++|..|+.+||.+   .+.++|+.||..||+||++|++++++++
T Consensus         5 rR~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~   65 (76)
T 3u5v_A            5 KRAHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERN   65 (76)
T ss_dssp             ----CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHhhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence            346899999999999999999999999953   3334799999999999999999999774

>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*

Probab=99.32  E-value=5.4e-13  Score=91.05  Aligned_cols=54  Identities=26%  Similarity=0.402  Sum_probs=47.8

Q ss_pred             cCccccHHHHHHHHHHHHHHHHHhhcCCCC-CcCcchhhhHHHHHHHHHHHHHHH
Q 030782           49 ATDSHSLAERARREKISERMKILQDLVPGC-NKVIGKALVLDEIINYIQSLQRQV  102 (171)
Q Consensus        49 ~~~~h~~~ER~RR~~In~~~~~L~~lvP~~-~k~~~KasiL~~aI~YIk~Lq~~v  102 (171)
                      .+..||..||+|+..||+.|..|+.+||.. .+.++|+.||..||+||.+|++.+
T Consensus        12 rR~~aN~rER~R~~~iN~af~~LR~~iP~~~~~KlSKi~tLr~Ai~YI~~L~~~L   66 (68)
T 1mdy_A           12 RRKAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALL   66 (68)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred             hhhHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            345799999999999999999999999965 344699999999999999999765

>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}

Probab=99.28  E-value=2.8e-12  Score=85.45  Aligned_cols=53  Identities=23%  Similarity=0.288  Sum_probs=47.1

Q ss_pred             ccccHHHHHHHHHHHHHHHHHhhcCCCC--CcCcchhhhHHHHHHHHHHHHHHHH
Q 030782           51 DSHSLAERARREKISERMKILQDLVPGC--NKVIGKALVLDEIINYIQSLQRQVE  103 (171)
Q Consensus        51 ~~h~~~ER~RR~~In~~~~~L~~lvP~~--~k~~~KasiL~~aI~YIk~Lq~~v~  103 (171)
                      ..||..||+|+..||+.|..|+.+||..  .++++|+.||..||+||..|++.++
T Consensus         4 ~~~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~   58 (60)
T 2ql2_B            4 MKANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR   58 (60)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence            4589999999999999999999999965  3446999999999999999998763

>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}

Probab=99.17  E-value=2.2e-11  Score=104.50  Aligned_cols=58  Identities=21%  Similarity=0.408  Sum_probs=41.9

Q ss_pred             cCCCcCccccHHHHHHHHHHHHHHHHHhhcCCCCCcCcchhhhHHHHHHHHHHHHHHH
Q 030782           45 RRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQV  102 (171)
Q Consensus        45 ~r~~~~~~h~~~ER~RR~~In~~~~~L~~lvP~~~k~~~KasiL~~aI~YIk~Lq~~v  102 (171)
                      |....+.+|+.+||+||++||..|.+|++|||....++||++||+.||+||+.|+...
T Consensus         8 ~~~~~~~~~~~~e~~rr~~~n~~~~~l~~~~p~~~~~~dk~~il~~~~~~~~~~~~~~   65 (361)
T 4f3l_A            8 KDKAKRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKETT   65 (361)
T ss_dssp             -----------CHHHHHHHHHHHHHHHHHTCCSSSCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             ccchhhhhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHHHhhc
Confidence            3445567899999999999999999999999954333599999999999999998653

>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}

Probab=99.16  E-value=7.5e-11  Score=83.10  Aligned_cols=48  Identities=31%  Similarity=0.454  Sum_probs=42.6

Q ss_pred             HHHHHHHHHHHhhcCCCCCc---CcchhhhHHHHHHHHHHHHHHHHHHHHH
Q 030782           61 REKISERMKILQDLVPGCNK---VIGKALVLDEIINYIQSLQRQVEFLSMK  108 (171)
Q Consensus        61 R~~In~~~~~L~~lvP~~~k---~~~KasiL~~aI~YIk~Lq~~v~~L~~~  108 (171)
                      |++||++|.+|..|||.++.   .++|++||.+||+||++||.+++.+...
T Consensus         4 R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~~e~   54 (83)
T 4ath_A            4 RFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDL   54 (83)
T ss_dssp             HHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred             hhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            89999999999999998643   2699999999999999999998877753

>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}

Probab=99.07  E-value=5.2e-11  Score=103.37  Aligned_cols=57  Identities=30%  Similarity=0.445  Sum_probs=48.3

Q ss_pred             ccCCCcCccccHHHHHHHHHHHHHHHHHhhcCCC----CCcCcchhhhHHHHHHHHHHHHHH
Q 030782           44 ARRGQATDSHSLAERARREKISERMKILQDLVPG----CNKVIGKALVLDEIINYIQSLQRQ  101 (171)
Q Consensus        44 ~~r~~~~~~h~~~ER~RR~~In~~~~~L~~lvP~----~~k~~~KasiL~~aI~YIk~Lq~~  101 (171)
                      .|.+.++.+|+.+||+||++||+.|.+|+.|||.    ..|+ ||++||+.||+||+.|+..
T Consensus         8 ~~~~~~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~-dk~~il~~~~~~l~~~~~~   68 (387)
T 4f3l_B            8 GRIKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKL-DKLTVLRMAVQHMKTLRGA   68 (387)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCC-CHHHHHHHHHHHHHHHHCC
T ss_pred             chhhhhcccccchhhcchHHHHHHHHHHHHhcCCCCcccccc-CHHHHHHHHHHHHHHhhcc
Confidence            3445667899999999999999999999999994    4565 9999999999999999843

>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=98.91  E-value=2.9e-10  Score=77.31  Aligned_cols=46  Identities=24%  Similarity=0.417  Sum_probs=40.6

Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCCC--CcCcchhhhHHHHHHHHHHHHH
Q 030782           55 LAERARREKISERMKILQDLVPGC--NKVIGKALVLDEIINYIQSLQR  100 (171)
Q Consensus        55 ~~ER~RR~~In~~~~~L~~lvP~~--~k~~~KasiL~~aI~YIk~Lq~  100 (171)
                      .-||+|...||+.|..||.+||..  +++++|..||+.||+||..||.
T Consensus        20 erER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~   67 (68)
T 2lfh_A           20 EEPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV   67 (68)
T ss_dssp             CCCSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence            348999999999999999999975  3446999999999999999984

>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}

Probab=98.54  E-value=1.7e-07  Score=67.78  Aligned_cols=48  Identities=27%  Similarity=0.414  Sum_probs=41.9

Q ss_pred             HHHHHHHHHHHHHHHhhcCCCC--CcCcchhhhHHHHHHHHHHHHHHHHH
Q 030782           57 ERARREKISERMKILQDLVPGC--NKVIGKALVLDEIINYIQSLQRQVEF  104 (171)
Q Consensus        57 ER~RR~~In~~~~~L~~lvP~~--~k~~~KasiL~~aI~YIk~Lq~~v~~  104 (171)
                      ||.|=..||+.|..||.+||..  .++++|..+|..||+||..|+..++.
T Consensus        33 ~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~   82 (97)
T 4aya_A           33 PMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDS   82 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhc
Confidence            5778889999999999999965  44569999999999999999987763

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	171
d1uklc_	61	a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId	3e-16
d1am9a_	80	a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxI	4e-14
d1nkpa_	88	a.38.1.1 (A:) Myc proto-oncogene protein {Human (H	1e-13
d1a0aa_	63	a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Sa	1e-12
d1mdya_	68	a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus muscul	8e-12
d1nkpb_	83	a.38.1.1 (B:) Max protein {Human (Homo sapiens) [T	3e-11
d1an4a_	65	a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapien	1e-10
d1nlwa_	79	a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [T	3e-10

>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 61

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.1 bits (164), Expect = 3e-16
 Identities = 16/57 (28%), Positives = 30/57 (52%)

Query: 61  REKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMN 117
           R  I++++  L+DLV G +  + K+ VL + I+YI+ LQ+    L  +   +     
Sbjct: 1   RSSINDKIIELKDLVMGTDAKMHKSGVLRKAIDYIKYLQQVNHKLRQENMVLKLANQ 57

>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]} Length = 80

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-1a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.3 bits (151), Expect = 4e-14
 Identities = 20/73 (27%), Positives = 41/73 (56%)

Query: 45  RRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEF 104
            RG+   +H+  E+  R  I++++  L+DLV G    + K+ VL + I+YI+ LQ   + 
Sbjct: 2   SRGEKRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQK 61

Query: 105 LSMKLEAVNSRMN 117
           L  +  ++ + ++
Sbjct: 62  LKQENLSLRTAVH 74

>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myc proto-oncogene protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.7 bits (147), Expect = 1e-13
 Identities = 19/79 (24%), Positives = 38/79 (48%), Gaps = 6/79 (7%)

Query: 41  HVRARRGQATDSHSLAERARREKISERMKILQDLVPGC--NKVIGKALVLDEIINYIQSL 98
           H+  +R     +H++ ER RR ++      L+D +P    N+   K ++L +   YI S+
Sbjct: 2   HMNVKR----RTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSV 57

Query: 99  QRQVEFLSMKLEAVNSRMN 117
           Q + + L  + + +  R  
Sbjct: 58  QAEEQKLISEEDLLRKRRE 76

>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 63

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Pho4 B/HLH domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 57.6 bits (139), Expect = 1e-12
 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 6/59 (10%)

Query: 51  DSHSLAERARREKISERMKILQDLVPGCNKVIG------KALVLDEIINYIQSLQRQVE 103
           +SH  AE+ARR +++  +  L  L+P   K         KA  ++    YI+ LQ+   
Sbjct: 4   ESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNGS 62

>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 68

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myod B/HLH domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.6 bits (134), Expect = 8e-12
 Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 52  SHSLAERARREKISERMKILQDLVPGC-NKVIGKALVLDEIINYIQSLQRQVE 103
           + ++ ER R  K++E  + L+       N+ + K  +L   I YI+ LQ  + 
Sbjct: 15  AATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALLR 67

>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]} Length = 83

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Max protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.5 bits (131), Expect = 3e-11
 Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 1/65 (1%)

Query: 52  SHSLAERARREKISERMKILQDLVPGC-NKVIGKALVLDEIINYIQSLQRQVEFLSMKLE 110
            H+  ER RR+ I +    L+D VP    +   +A +LD+   YIQ ++R+       ++
Sbjct: 5   HHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDID 64

Query: 111 AVNSR 115
            +  +
Sbjct: 65  DLKRQ 69

>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Usf B/HLH domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.5 bits (126), Expect = 1e-10
 Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 5/58 (8%)

Query: 51  DSHSLAERARREKISERMKILQDLVPGCNKVIG-----KALVLDEIINYIQSLQRQVE 103
             H+  ER RR+KI+  +  L  ++P  +         K  +L +  +YIQ L++   
Sbjct: 7   AQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSNH 64

>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Mad protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.4 bits (123), Expect = 3e-10
 Identities = 11/68 (16%), Positives = 27/68 (39%), Gaps = 2/68 (2%)

Query: 52  SHSLAERARREKISERMKILQDLVPGCNKV--IGKALVLDEIINYIQSLQRQVEFLSMKL 109
           +H+  E+ RR  +   ++ L+ LVP            +L +   +I+ L+        ++
Sbjct: 4   THNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQI 63

Query: 110 EAVNSRMN 117
           + +     
Sbjct: 64  DQLQREQR 71

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	171
d1am9a_	80	SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}	99.73
d1nlwa_	79	Mad protein {Human (Homo sapiens) [TaxId: 9606]}	99.67
d1nkpb_	83	Max protein {Human (Homo sapiens) [TaxId: 9606]}	99.64
d1nkpa_	88	Myc proto-oncogene protein {Human (Homo sapiens) [	99.64
d1a0aa_	63	Pho4 B/HLH domain {Baker's yeast (Saccharomyces ce	99.63
d1mdya_	68	Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10	99.61
d1uklc_	61	SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}	99.59
d1an4a_	65	Usf B/HLH domain {Human (Homo sapiens) [TaxId: 960	99.58

>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-1a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=1.2e-18  Score=120.48  Aligned_cols=68  Identities=26%  Similarity=0.400  Sum_probs=61.5

Q ss_pred             cCccccHHHHHHHHHHHHHHHHHhhcCCCCCcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 030782           49 ATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRM  116 (171)
Q Consensus        49 ~~~~h~~~ER~RR~~In~~~~~L~~lvP~~~k~~~KasiL~~aI~YIk~Lq~~v~~L~~~~e~~~~~~  116 (171)
                      .+..|+.+||+||++||++|..|++|||++...++|++||..||+||++|+.+++.|..+++.+...+
T Consensus         6 kR~~H~~~Er~RR~~in~~~~~L~~llP~~~~k~~K~~iL~~a~~yI~~L~~~~~~L~~e~~~lk~~~   73 (80)
T d1am9a_           6 KRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRTAV   73 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34689999999999999999999999999865569999999999999999999999999888776544

>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Mad protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=5.4e-17  Score=111.59  Aligned_cols=66  Identities=17%  Similarity=0.193  Sum_probs=58.5

Q ss_pred             CccccHHHHHHHHHHHHHHHHHhhcCCCCC--cCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030782           50 TDSHSLAERARREKISERMKILQDLVPGCN--KVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSR  115 (171)
Q Consensus        50 ~~~h~~~ER~RR~~In~~~~~L~~lvP~~~--k~~~KasiL~~aI~YIk~Lq~~v~~L~~~~e~~~~~  115 (171)
                      +..|+.+||+||++||++|..|+++||.+.  ..++|++||+.||+||++|+.+++.|..+++.+...
T Consensus         2 R~~Hn~~Er~RR~~in~~f~~L~~llP~~~~~~k~sK~~iL~~A~~yI~~L~~~~~~l~~~~~~L~~~   69 (79)
T d1nlwa_           2 RSTHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQIDQLQRE   69 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            457999999999999999999999999763  235999999999999999999999999888777654

>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Max protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=1e-16  Score=111.17  Aligned_cols=65  Identities=26%  Similarity=0.459  Sum_probs=56.8

Q ss_pred             CccccHHHHHHHHHHHHHHHHHhhcCCCC-CcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030782           50 TDSHSLAERARREKISERMKILQDLVPGC-NKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNS  114 (171)
Q Consensus        50 ~~~h~~~ER~RR~~In~~~~~L~~lvP~~-~k~~~KasiL~~aI~YIk~Lq~~v~~L~~~~e~~~~  114 (171)
                      +..|+.+||+||++||+.|..|+++||++ .+.++|++||..||+||++|+.+++.|..+++.+..
T Consensus         3 R~~Hn~~Er~RR~~in~~f~~L~~llP~~~~~k~sK~~iL~~A~~yI~~L~~~~~~l~~~~~~l~~   68 (83)
T d1nkpb_           3 RAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKR   68 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45799999999999999999999999975 334599999999999999999999988887666543

>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myc proto-oncogene protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=9.3e-17  Score=112.46  Aligned_cols=66  Identities=24%  Similarity=0.395  Sum_probs=57.9

Q ss_pred             CccccHHHHHHHHHHHHHHHHHhhcCCCCC--cCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030782           50 TDSHSLAERARREKISERMKILQDLVPGCN--KVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSR  115 (171)
Q Consensus        50 ~~~h~~~ER~RR~~In~~~~~L~~lvP~~~--k~~~KasiL~~aI~YIk~Lq~~v~~L~~~~e~~~~~  115 (171)
                      +..|+.+||+||++||++|..|+++||++.  ..++|++||..||+||++|+.+++.|..+++.+...
T Consensus         7 R~~Hn~~Er~RR~~in~~f~~Lr~llP~~~~~~k~sK~~iL~~A~~yI~~L~~~~~~l~~~~~~l~~~   74 (88)
T d1nkpa_           7 RRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEEDLLRKR   74 (88)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            457999999999999999999999999752  335999999999999999999999998877766544

>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Pho4 B/HLH domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.63  E-value=7.7e-17  Score=106.70  Aligned_cols=53  Identities=30%  Similarity=0.471  Sum_probs=46.9

Q ss_pred             CccccHHHHHHHHHHHHHHHHHhhcCCCC------CcCcchhhhHHHHHHHHHHHHHHH
Q 030782           50 TDSHSLAERARREKISERMKILQDLVPGC------NKVIGKALVLDEIINYIQSLQRQV  102 (171)
Q Consensus        50 ~~~h~~~ER~RR~~In~~~~~L~~lvP~~------~k~~~KasiL~~aI~YIk~Lq~~v  102 (171)
                      +..|+.+||+||++||++|..|++|||++      ...++|+.||+.||+||++||+++
T Consensus         3 R~~H~~~Er~RR~~in~~~~~L~~llP~~~~~~~~~~k~sKa~iL~~Av~yI~~Lq~~v   61 (63)
T d1a0aa_           3 RESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNG   61 (63)
T ss_dssp             TTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCS
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHCCCcccccCCcccccHHHHHHHHHHHHHHHHHhh
Confidence            56899999999999999999999999953      223599999999999999999865

>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myod B/HLH domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.61  E-value=7.4e-17  Score=108.44  Aligned_cols=54  Identities=24%  Similarity=0.380  Sum_probs=48.6

Q ss_pred             CccccHHHHHHHHHHHHHHHHHhhcCCCCC-cCcchhhhHHHHHHHHHHHHHHHH
Q 030782           50 TDSHSLAERARREKISERMKILQDLVPGCN-KVIGKALVLDEIINYIQSLQRQVE  103 (171)
Q Consensus        50 ~~~h~~~ER~RR~~In~~~~~L~~lvP~~~-k~~~KasiL~~aI~YIk~Lq~~v~  103 (171)
                      +..|+..||+||.+||++|..|+++||.+. +.++|++||+.||+||++||+.++
T Consensus        13 R~~hn~~Er~Rr~~in~~~~~L~~llP~~~~~k~sK~~iL~~Ai~YI~~Lq~~l~   67 (68)
T d1mdya_          13 RKAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALLR   67 (68)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHhh
Confidence            457999999999999999999999999873 446999999999999999998764

>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=2.9e-16  Score=103.33  Aligned_cols=56  Identities=29%  Similarity=0.352  Sum_probs=50.8

Q ss_pred             HHHHHHHHHHHhhcCCCCCcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 030782           61 REKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRM  116 (171)
Q Consensus        61 R~~In~~~~~L~~lvP~~~k~~~KasiL~~aI~YIk~Lq~~v~~L~~~~e~~~~~~  116 (171)
                      |++||++|..|+++||++.+++|||+||++||+||++||.+++.|++++..+....
T Consensus         1 R~~in~~f~~L~~lvP~~~~K~~Ka~iL~~Ai~YI~~Lq~~~~~L~~e~~~L~~~~   56 (61)
T d1uklc_           1 RSSINDKIIELKDLVMGTDAKMHKSGVLRKAIDYIKYLQQVNHKLRQENMVLKLAN   56 (61)
T ss_dssp             CCCHHHHHHHHHHHHSCSSCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            67899999999999999865569999999999999999999999999988887654

>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Usf B/HLH domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=2.4e-16  Score=104.83  Aligned_cols=54  Identities=28%  Similarity=0.442  Sum_probs=47.4

Q ss_pred             cCccccHHHHHHHHHHHHHHHHHhhcCCCCC-----cCcchhhhHHHHHHHHHHHHHHH
Q 030782           49 ATDSHSLAERARREKISERMKILQDLVPGCN-----KVIGKALVLDEIINYIQSLQRQV  102 (171)
Q Consensus        49 ~~~~h~~~ER~RR~~In~~~~~L~~lvP~~~-----k~~~KasiL~~aI~YIk~Lq~~v  102 (171)
                      .+..|+.+||+||++||++|..|++|||.+.     ..++|++||..||+||++||++.
T Consensus         5 rR~~H~~~Er~RR~~in~~f~~L~~lvP~~~~~~~~~k~sK~~iL~~av~yI~~Lq~~~   63 (65)
T d1an4a_           5 RRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSN   63 (65)
T ss_dssp             CCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcccccccCCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence            3457999999999999999999999999753     12599999999999999999764