Citrus Sinensis ID: 030817

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-
Protein Sequence
MFDAAELEIEGDFLYFLADAAVTAFQYGNPDKLCTPLVEAKNAGEDLVDAYAKFVKEYYLGSFGASVQTYNQKRLKNTAVTDQSADRLWWFQVCTEVAFFQVAPANDSVRSSKVDTRYHLDLCKNVFGEGIYPDVDSTNIYYGGTKIAGSLASCIQTNFISRYAFIPHHMS
Secondary Structure (PSIPRED)
cccccccccHHHHHHHHHHHHHHHHHcccHHHccHHHHHcccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHcccccccccccEEEEEEEcccccEEEcccccccccccccHHHHHHHHHHHHcccccccHHHHHHHHcccccccccccEEEEcccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHccccHHHHHHHHHHHHHHHHccccHHHcHHHHHHcccccHHHHHHHHHHHHHHHHHccccccHccHHHHHcccccccccccEEEEEEcEEEEEEEEcccccccccccccHHHHHHHHHHHHccccccccHHHHHHcccccccccHHHHHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
MFDAAELEIEGDFLYFLADAAVTAfqygnpdklctplveaknaGEDLVDAYAKFVKEYYLGSFGASVQTYNQkrlkntavtdqsadRLWWFQVCTEVAffqvapandsvrsskvdtRYHLDLCKnvfgegiypdvdstniyyggtkiAGSLASCIQtnfisryafiphhms
Flexible Loop (DISEMBL)
MFDAAELEIEGDFLYFLADAAVTAFQYGNPDKLCTPLVEAKNAGEDLVDAYAKFVKEYYLGSFGASVQTYNQKRLKNTAVTDQSADRLWWFQVCTEVAFfqvapandsvrsskvdtrYHLDLCKNVFGEGIYPDVDSTNIYYGGTKIAGSLASCIQTNFISRYAFIPHHMS
Low Complexity Region (SEG)
MFDAAELEIEGDFLYFLADAAVTAFQYGNPDKLCTPLVEAKNAGEDLVDAYAKFVKEYYLGSFGASVQTYNQKRLKNTAVTDQSADRLWWFQVCTEVAFFQVAPANDSVRSSKVDTRYHLDLCKNVFGEGIYPDVDSTNIYYGGTKIAGSLASCIQTNFISRYAFIPHHMS
Disordered region (IsUnstruct)
******LEIEGDFLYFLADAAVTAFQYGNPDKLCTPLVEAKNAGEDLVDAYAKFVKEYYLGSFGASVQTYNQKRLKNTAVTDQSADRLWWFQVCTEVAFFQV**************RYHLDLCKNVFGEGIYPDVDSTNIYYGGTKIAGSLASCIQTNFISRYAFIP****
Disordered Region (DISOPRED)
MFD*AELEIEGDFLYFLADAAVTAFQYGNPDKLCTPLVEAKNAGEDLVDAYAKFVKEYYLGSFGASVQTYNQKRLKNTAVTDQSADRLWWFQVCTEVAFFQVAPANDSVRSSKVDTRYHLDLCKNVFGEGIYPDVDSTNIYYGGTKIAGSLASCIQTNFISRYAFIPHHM*
Disordered Region (DISEMBL)
MFDAAELEIEGDFLYFLADAAVTAFQYGNPDKLCTPLVEAKNAGEDLVDAYAKFVKEYYLGSFGASVQTYNQKRLKNTAVTDQSADRLWWFQVCTEVAFFQVAPANDSVRSSKVDTRYHLDLCKNVFGEGIYPDVDSTNIYYGGTKIAGSLASCIQTNFISRYAFIPHHMS
Disordered Region (DISPRO)
MFDAAELEIEGDFLYFLADAAVTAFQYGNPDKLCTPLVEAKNAGEDLVDAYAKFVKEYYLGSFGASVQTYNQKRLKNTAVTDQSADRLWWFQVCTEVAFFQVAPANDSVRSSKVDTRYHLDLCKNVFGEGIYPDVDSTNIYYGGTKIAGSLASCIQTNFISRYAFIPHHMS
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MFDAAELEIEGDFLYFLADAAVTAFQYGNPDKLCTPLVEAKNAGEDLVDAYAKFVKEYYLGSFGASVQTYNQKRLKNTAVTDQSADRLWWFQVCTEVAFFQVAPANDSVRSSKVDTRYHLDLCKNVFGEGIYPDVDSTNIYYGGTKIAGSLASCIQTNFISRYAFIPHHMS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	171	2.2.26 [Sep-21-2011]
Q1PF50	489	Probable serine protease	no	no	0.877	0.306	0.6	1e-52

>sp|Q1PF50|EDA2_ARATH Probable serine protease EDA2 OS=Arabidopsis thaliana GN=EDA2 PE=2 SV=2

 Score =  205 bits (522), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 90/150 (60%), Positives = 118/150 (78%)

Query: 1   MFDAAELEIEGDFLYFLADAAVTAFQYGNPDKLCTPLVEAKNAGEDLVDAYAKFVKEYYL 60
           +F+A EL+++ DFLY  ADAAV AFQYGNPDKLC PLVEAK  G DLV  Y+ +V+EY +
Sbjct: 251 LFNATELDVDADFLYLTADAAVMAFQYGNPDKLCVPLVEAKKNGSDLVVTYSTYVREYCM 310

Query: 61  GSFGASVQTYNQKRLKNTAVTDQSADRLWWFQVCTEVAFFQVAPANDSVRSSKVDTRYHL 120
             +G  V+TYN+K L+NT VT  SA RLWWFQ CTE+ +FQVAP  DSVRS +++T +HL
Sbjct: 311 RIWGLRVRTYNRKHLRNTVVTADSAYRLWWFQACTELGYFQVAPKYDSVRSHQINTTFHL 370

Query: 121 DLCKNVFGEGIYPDVDSTNIYYGGTKIAGS 150
           DLCK++FG+ +YP VD+TN+YYGG ++A +
Sbjct: 371 DLCKSLFGKDVYPKVDATNLYYGGDRLAAT 400

May be involved in a proteolytic pathway controlling the nuclear division phase of megagametogenesis.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: -EC: .EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	171
255581402	482	catalytic, putative [Ricinus communis] g	0.877	0.311	0.84	7e-73
449457546	489	PREDICTED: probable serine protease EDA2	0.877	0.306	0.813	6e-69
449499944	486	PREDICTED: probable serine protease EDA2	0.877	0.308	0.813	8e-69
224097128	487	predicted protein [Populus trichocarpa]	0.877	0.308	0.8	2e-68
224108896	490	predicted protein [Populus trichocarpa]	0.877	0.306	0.8	2e-68
118487876	485	unknown [Populus trichocarpa]	0.877	0.309	0.793	3e-68
357483671	478	Thymus-specific serine protease [Medicag	0.871	0.311	0.812	4e-68
363814290	488	uncharacterized protein LOC100805858 pre	0.871	0.305	0.778	3e-66
357518131	455	Thymus-specific serine protease [Medicag	0.877	0.329	0.74	1e-65
255645752	490	unknown [Glycine max]	0.871	0.304	0.738	4e-65

>gi|255581402|ref|XP_002531509.1| catalytic, putative [Ricinus communis] gi|223528862|gb|EEF30863.1| catalytic, putative [Ricinus communis]

 Score =  278 bits (710), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 126/150 (84%), Positives = 144/150 (96%)

Query: 1   MFDAAELEIEGDFLYFLADAAVTAFQYGNPDKLCTPLVEAKNAGEDLVDAYAKFVKEYYL 60
           +F+AAELEI+GDFLYFLADAAV AFQYGNPDKLC+PLVEAK AGEDLV+AYAK+VKEYY+
Sbjct: 244 LFNAAELEIDGDFLYFLADAAVIAFQYGNPDKLCSPLVEAKKAGEDLVEAYAKYVKEYYV 303

Query: 61  GSFGASVQTYNQKRLKNTAVTDQSADRLWWFQVCTEVAFFQVAPANDSVRSSKVDTRYHL 120
           GSFG SV+TYNQK LK+TA+ + S+DRLWWFQVCTEVA+FQVAP+NDS+RSSKV+TRYHL
Sbjct: 304 GSFGVSVETYNQKHLKDTAINENSSDRLWWFQVCTEVAYFQVAPSNDSIRSSKVNTRYHL 363

Query: 121 DLCKNVFGEGIYPDVDSTNIYYGGTKIAGS 150
           DLCKNVFGEGIYP+VD+TNIYYGGTKIAGS
Sbjct: 364 DLCKNVFGEGIYPEVDTTNIYYGGTKIAGS 393

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449457546|ref|XP_004146509.1| PREDICTED: probable serine protease EDA2-like [Cucumis sativus] gi|449499940|ref|XP_004160960.1| PREDICTED: probable serine protease EDA2-like isoform 1 [Cucumis sativus]

 Score =  265 bits (676), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 122/150 (81%), Positives = 136/150 (90%)

Query: 1   MFDAAELEIEGDFLYFLADAAVTAFQYGNPDKLCTPLVEAKNAGEDLVDAYAKFVKEYYL 60
           +F A ELEI+GDF Y LADAAV AFQYGNPD LC+PLV+AKNAG DLVDAYAK+VK+YY+
Sbjct: 250 LFGAGELEIDGDFFYLLADAAVIAFQYGNPDTLCSPLVQAKNAGNDLVDAYAKYVKDYYI 309

Query: 61  GSFGASVQTYNQKRLKNTAVTDQSADRLWWFQVCTEVAFFQVAPANDSVRSSKVDTRYHL 120
           GSFG+SVQTYNQK LKNT   + SADRLWWFQVCTEVA+FQVAPANDS+RSSKVD +YHL
Sbjct: 310 GSFGSSVQTYNQKYLKNTTPGEDSADRLWWFQVCTEVAYFQVAPANDSMRSSKVDAKYHL 369

Query: 121 DLCKNVFGEGIYPDVDSTNIYYGGTKIAGS 150
           DLCKNVFGEG+YPDVD+TNIYYGGT IAGS
Sbjct: 370 DLCKNVFGEGVYPDVDTTNIYYGGTGIAGS 399

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449499944|ref|XP_004160961.1| PREDICTED: probable serine protease EDA2-like isoform 2 [Cucumis sativus]

 Score =  264 bits (675), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 122/150 (81%), Positives = 136/150 (90%)

Query: 1   MFDAAELEIEGDFLYFLADAAVTAFQYGNPDKLCTPLVEAKNAGEDLVDAYAKFVKEYYL 60
           +F A ELEI+GDF Y LADAAV AFQYGNPD LC+PLV+AKNAG DLVDAYAK+VK+YY+
Sbjct: 250 LFGAGELEIDGDFFYLLADAAVIAFQYGNPDTLCSPLVQAKNAGNDLVDAYAKYVKDYYI 309

Query: 61  GSFGASVQTYNQKRLKNTAVTDQSADRLWWFQVCTEVAFFQVAPANDSVRSSKVDTRYHL 120
           GSFG+SVQTYNQK LKNT   + SADRLWWFQVCTEVA+FQVAPANDS+RSSKVD +YHL
Sbjct: 310 GSFGSSVQTYNQKYLKNTTPGEDSADRLWWFQVCTEVAYFQVAPANDSMRSSKVDAKYHL 369

Query: 121 DLCKNVFGEGIYPDVDSTNIYYGGTKIAGS 150
           DLCKNVFGEG+YPDVD+TNIYYGGT IAGS
Sbjct: 370 DLCKNVFGEGVYPDVDTTNIYYGGTGIAGS 399

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224097128|ref|XP_002310843.1| predicted protein [Populus trichocarpa] gi|222853746|gb|EEE91293.1| predicted protein [Populus trichocarpa]

 Score =  263 bits (672), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 120/150 (80%), Positives = 136/150 (90%)

Query: 1   MFDAAELEIEGDFLYFLADAAVTAFQYGNPDKLCTPLVEAKNAGEDLVDAYAKFVKEYYL 60
           +FDAAELEI+GDFLYFLADAAV AFQYGNPDKLC PLV+AK  GEDLV+AYAK+VKE Y+
Sbjct: 249 LFDAAELEIDGDFLYFLADAAVIAFQYGNPDKLCPPLVQAKKDGEDLVEAYAKYVKEDYV 308

Query: 61  GSFGASVQTYNQKRLKNTAVTDQSADRLWWFQVCTEVAFFQVAPANDSVRSSKVDTRYHL 120
           GSFG SVQTY+Q+ LK+T + + S DRLWWFQVCTEVA+FQVAPANDS+RSS+VDTRYHL
Sbjct: 309 GSFGVSVQTYDQRHLKDTTLNENSGDRLWWFQVCTEVAYFQVAPANDSIRSSQVDTRYHL 368

Query: 121 DLCKNVFGEGIYPDVDSTNIYYGGTKIAGS 150
           DLCK VFGEGIYP+VD TNIYYGGT +AGS
Sbjct: 369 DLCKKVFGEGIYPEVDKTNIYYGGTNMAGS 398

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224108896|ref|XP_002333330.1| predicted protein [Populus trichocarpa] gi|222836225|gb|EEE74646.1| predicted protein [Populus trichocarpa]

 Score =  263 bits (672), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 120/150 (80%), Positives = 136/150 (90%)

Query: 1   MFDAAELEIEGDFLYFLADAAVTAFQYGNPDKLCTPLVEAKNAGEDLVDAYAKFVKEYYL 60
           +FDAAELEI+GDFLYFLADAA TAFQYGNPDKLC PLV+AK  GEDLV+AYAK+VKE Y+
Sbjct: 252 LFDAAELEIDGDFLYFLADAAATAFQYGNPDKLCPPLVQAKKDGEDLVEAYAKYVKEDYV 311

Query: 61  GSFGASVQTYNQKRLKNTAVTDQSADRLWWFQVCTEVAFFQVAPANDSVRSSKVDTRYHL 120
           GSFG SVQTY+Q+ LK+T + + S DRLWWFQVCTEVA+FQVAPANDS+RSS+VDTRYHL
Sbjct: 312 GSFGVSVQTYDQRHLKDTTLNENSGDRLWWFQVCTEVAYFQVAPANDSIRSSQVDTRYHL 371

Query: 121 DLCKNVFGEGIYPDVDSTNIYYGGTKIAGS 150
           DLCK VFGEGIYP+VD TNIYYGGT +AGS
Sbjct: 372 DLCKKVFGEGIYPEVDKTNIYYGGTNMAGS 401

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118487876|gb|ABK95760.1| unknown [Populus trichocarpa]

 Score =  262 bits (670), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 119/150 (79%), Positives = 138/150 (92%)

Query: 1   MFDAAELEIEGDFLYFLADAAVTAFQYGNPDKLCTPLVEAKNAGEDLVDAYAKFVKEYYL 60
           +FDAAELEI+GDFLYFLADAAV AFQYGNPD +C+ LV+AKN G+DLV+AYAK+VKEYYL
Sbjct: 247 LFDAAELEIDGDFLYFLADAAVIAFQYGNPDIVCSTLVKAKNNGDDLVEAYAKYVKEYYL 306

Query: 61  GSFGASVQTYNQKRLKNTAVTDQSADRLWWFQVCTEVAFFQVAPANDSVRSSKVDTRYHL 120
           G+FG+SVQTYNQK LK+T++   + DRLWWFQVCTEVA+FQVAP+NDS+RSSKVD RYHL
Sbjct: 307 GTFGSSVQTYNQKYLKDTSLNKHTGDRLWWFQVCTEVAYFQVAPSNDSIRSSKVDARYHL 366

Query: 121 DLCKNVFGEGIYPDVDSTNIYYGGTKIAGS 150
           DLCKNVFGEGIYP+VD TNIYYGGT I+GS
Sbjct: 367 DLCKNVFGEGIYPEVDVTNIYYGGTNISGS 396

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357483671|ref|XP_003612122.1| Thymus-specific serine protease [Medicago truncatula] gi|355513457|gb|AES95080.1| Thymus-specific serine protease [Medicago truncatula]

 Score =  262 bits (669), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 121/149 (81%), Positives = 136/149 (91%)

Query: 2   FDAAELEIEGDFLYFLADAAVTAFQYGNPDKLCTPLVEAKNAGEDLVDAYAKFVKEYYLG 61
           F+AA+LEI+GDFLYFLADAAVTAFQYGNPD LC PLV+AK  GEDLVDAYAKF+KE+YLG
Sbjct: 241 FNAADLEIDGDFLYFLADAAVTAFQYGNPDILCKPLVKAKKDGEDLVDAYAKFIKEFYLG 300

Query: 62  SFGASVQTYNQKRLKNTAVTDQSADRLWWFQVCTEVAFFQVAPANDSVRSSKVDTRYHLD 121
           + G S Q YNQ  LKN A+T+ S+ RLWWFQVCTEVA+FQVAP+NDS+RSSKVDTRYHLD
Sbjct: 301 TEGESTQDYNQNNLKNAAITENSSGRLWWFQVCTEVAYFQVAPSNDSIRSSKVDTRYHLD 360

Query: 122 LCKNVFGEGIYPDVDSTNIYYGGTKIAGS 150
           LCKNVFGEGI+PDVD+TNIYYGGTKIAGS
Sbjct: 361 LCKNVFGEGIFPDVDATNIYYGGTKIAGS 389

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363814290|ref|NP_001242784.1| uncharacterized protein LOC100805858 precursor [Glycine max] gi|255635884|gb|ACU18289.1| unknown [Glycine max]

 Score =  256 bits (653), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 116/149 (77%), Positives = 134/149 (89%)

Query: 2   FDAAELEIEGDFLYFLADAAVTAFQYGNPDKLCTPLVEAKNAGEDLVDAYAKFVKEYYLG 61
           FDAA+LEI+GDF YFLADA   AFQYGNPDK+C PLVEAK AGEDLVDAYAK+VKEYY+G
Sbjct: 251 FDAADLEIDGDFFYFLADATAIAFQYGNPDKVCKPLVEAKKAGEDLVDAYAKYVKEYYIG 310

Query: 62  SFGASVQTYNQKRLKNTAVTDQSADRLWWFQVCTEVAFFQVAPANDSVRSSKVDTRYHLD 121
           +FG  VQTY+QK LK TA+ + ++ RLWWFQVCTEVA+FQVAP+NDS+RSSKVD +YH D
Sbjct: 311 TFGTDVQTYDQKYLKRTAMNEDNSARLWWFQVCTEVAYFQVAPSNDSIRSSKVDIKYHFD 370

Query: 122 LCKNVFGEGIYPDVDSTNIYYGGTKIAGS 150
           LCKNVFGEGI+PDVD+TN+YYGGTKIAGS
Sbjct: 371 LCKNVFGEGIFPDVDATNLYYGGTKIAGS 399

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357518131|ref|XP_003629354.1| Thymus-specific serine protease [Medicago truncatula] gi|355523376|gb|AET03830.1| Thymus-specific serine protease [Medicago truncatula]

 Score =  253 bits (647), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 111/150 (74%), Positives = 140/150 (93%)

Query: 1   MFDAAELEIEGDFLYFLADAAVTAFQYGNPDKLCTPLVEAKNAGEDLVDAYAKFVKEYYL 60
           +F+A +LEI+GDFLY+LADAAV AFQYGNPDKLC PLV+AKNAGEDLVDAYAK+VKEYY+
Sbjct: 217 IFNADDLEIDGDFLYYLADAAVIAFQYGNPDKLCKPLVDAKNAGEDLVDAYAKYVKEYYV 276

Query: 61  GSFGASVQTYNQKRLKNTAVTDQSADRLWWFQVCTEVAFFQVAPANDSVRSSKVDTRYHL 120
           G+FG + ++Y+Q+ LK TA+ + S+ RLWWFQVCTEVA+FQVAP+NDS+RSSK+DT+YHL
Sbjct: 277 GTFGITPKSYDQEYLKKTAINEDSSTRLWWFQVCTEVAYFQVAPSNDSIRSSKIDTKYHL 336

Query: 121 DLCKNVFGEGIYPDVDSTNIYYGGTKIAGS 150
           DLCKN+FG+G++PDVD+TN+YYGGTK+AGS
Sbjct: 337 DLCKNIFGDGVFPDVDATNLYYGGTKVAGS 366

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255645752|gb|ACU23369.1| unknown [Glycine max]

 Score =  252 bits (643), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 110/149 (73%), Positives = 136/149 (91%)

Query: 2   FDAAELEIEGDFLYFLADAAVTAFQYGNPDKLCTPLVEAKNAGEDLVDAYAKFVKEYYLG 61
           F+A +LE +GDF+Y +ADAA  AFQYGNPDK+C P+VEAKNAGEDLVDAYAK+VKEYY+G
Sbjct: 254 FNADDLEKDGDFMYLIADAAAVAFQYGNPDKVCKPMVEAKNAGEDLVDAYAKYVKEYYIG 313

Query: 62  SFGASVQTYNQKRLKNTAVTDQSADRLWWFQVCTEVAFFQVAPANDSVRSSKVDTRYHLD 121
           +FG +VQTY+Q+ LK TA+ + S+ RLWWFQVCTEVAFFQVAP+NDS+RSS++D +YH+D
Sbjct: 314 TFGVNVQTYDQEYLKKTAINEDSSTRLWWFQVCTEVAFFQVAPSNDSIRSSEIDAKYHMD 373

Query: 122 LCKNVFGEGIYPDVDSTNIYYGGTKIAGS 150
           LCKN+FGEGI+PDVD+TN+YYGGTKIAGS
Sbjct: 374 LCKNIFGEGIFPDVDATNLYYGGTKIAGS 402

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	171
TAIR|locus:2122249	482	AT4G36190 [Arabidopsis thalian	0.877	0.311	0.653	1.6e-54
TAIR|locus:505006564	488	AT4G36195 [Arabidopsis thalian	0.877	0.307	0.64	7e-54
TAIR|locus:2060959	489	EDA2 "embryo sac development a	0.877	0.306	0.6	2.5e-49
DICTYBASE|DDB_G0290139	476	DDB_G0290139 "peptidase S28 fa	0.865	0.310	0.361	5.9e-22
DICTYBASE|DDB_G0278299	635	DDB_G0278299 "peptidase S28 fa	0.836	0.225	0.291	7.3e-13
DICTYBASE|DDB_G0290409	469	DDB_G0290409 "peptidase S28 fa	0.777	0.283	0.270	1.2e-09
WB|WBGene00003957	1080	pcp-2 [Caenorhabditis elegans	0.771	0.122	0.273	5.5e-07
WB|WBGene00019682	510	K12H4.7 [Caenorhabditis elegan	0.538	0.180	0.301	0.00069
UNIPROTKB|P34528	510	K12H4.7 "Putative serine prote	0.538	0.180	0.301	0.00069
DICTYBASE|DDB_G0274663	487	DDB_G0274663 "peptidase S28 fa	0.695	0.244	0.238	0.00086

TAIR|locus:2122249 AT4G36190 [Arabidopsis thaliana (taxid:3702)]

 Score = 563 (203.2 bits), Expect = 1.6e-54, P = 1.6e-54
 Identities = 98/150 (65%), Positives = 128/150 (85%)

Query:     1 MFDAAELEIEGDFLYFLADAAVTAFQYGNPDKLCTPLVEAKNAGEDLVDAYAKFVKEYYL 60
             +F+A EL+++ DFLY +ADA V A QYGNPDKLC PLVEA+  G DLV+AYAK+V+E+ +
Sbjct:   250 LFNATELDVDADFLYLIADAGVMAIQYGNPDKLCVPLVEAQKNGGDLVEAYAKYVREFCM 309

Query:    61 GSFGASVQTYNQKRLKNTAVTDQSADRLWWFQVCTEVAFFQVAPANDSVRSSKVDTRYHL 120
             G FG S +TY++K L +TAVT +SADRLWWFQVCTEVA+FQVAPANDS+RS +++T YHL
Sbjct:   310 GVFGQSSKTYSRKHLLDTAVTLESADRLWWFQVCTEVAYFQVAPANDSIRSHQINTEYHL 369

Query:   121 DLCKNVFGEGIYPDVDSTNIYYGGTKIAGS 150
             DLCK++FG+G+YP+VD+TN+YYG  KIA +
Sbjct:   370 DLCKSLFGKGVYPEVDATNLYYGSDKIAAT 399

GO:0005576 "extracellular region" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA;ISS

GO:0008236 "serine-type peptidase activity" evidence=IEA;ISS

GO:0005773 "vacuole" evidence=IDA

TAIR|locus:505006564 AT4G36195 [Arabidopsis thaliana (taxid:3702)]

 Score = 557 (201.1 bits), Expect = 7.0e-54, P = 7.0e-54
 Identities = 96/150 (64%), Positives = 128/150 (85%)

Query:     1 MFDAAELEIEGDFLYFLADAAVTAFQYGNPDKLCTPLVEAKNAGEDLVDAYAKFVKEYYL 60
             +F+A EL+++ DFLY +ADA V A QYGNPDKLC PLVEA+   +DLV+AYAK+V+E+ +
Sbjct:   250 LFNATELDVDADFLYLIADAEVMAIQYGNPDKLCVPLVEAQKNRDDLVEAYAKYVREFCV 309

Query:    61 GSFGASVQTYNQKRLKNTAVTDQSADRLWWFQVCTEVAFFQVAPANDSVRSSKVDTRYHL 120
             G FG S +TY++K L +TAVT +SADRLWWFQVCTEVA+FQVAPANDS+RS +++T YHL
Sbjct:   310 GVFGLSSKTYSRKHLLDTAVTPESADRLWWFQVCTEVAYFQVAPANDSIRSHQINTEYHL 369

Query:   121 DLCKNVFGEGIYPDVDSTNIYYGGTKIAGS 150
             DLCK++FG+G+YP+VD+TN+YYG  +IA +
Sbjct:   370 DLCKSLFGKGVYPEVDATNLYYGSDRIAAT 399

GO:0005576 "extracellular region" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA;ISS

GO:0008236 "serine-type peptidase activity" evidence=IEA;ISS

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

TAIR|locus:2060959 EDA2 "embryo sac development arrest 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 514 (186.0 bits), Expect = 2.5e-49, P = 2.5e-49
 Identities = 90/150 (60%), Positives = 118/150 (78%)

Query:     1 MFDAAELEIEGDFLYFLADAAVTAFQYGNPDKLCTPLVEAKNAGEDLVDAYAKFVKEYYL 60
             +F+A EL+++ DFLY  ADAAV AFQYGNPDKLC PLVEAK  G DLV  Y+ +V+EY +
Sbjct:   251 LFNATELDVDADFLYLTADAAVMAFQYGNPDKLCVPLVEAKKNGSDLVVTYSTYVREYCM 310

Query:    61 GSFGASVQTYNQKRLKNTAVTDQSADRLWWFQVCTEVAFFQVAPANDSVRSSKVDTRYHL 120
               +G  V+TYN+K L+NT VT  SA RLWWFQ CTE+ +FQVAP  DSVRS +++T +HL
Sbjct:   311 RIWGLRVRTYNRKHLRNTVVTADSAYRLWWFQACTELGYFQVAPKYDSVRSHQINTTFHL 370

Query:   121 DLCKNVFGEGIYPDVDSTNIYYGGTKIAGS 150
             DLCK++FG+ +YP VD+TN+YYGG ++A +
Sbjct:   371 DLCKSLFGKDVYPKVDATNLYYGGDRLAAT 400

GO:0005576 "extracellular region" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA;ISS

GO:0008236 "serine-type peptidase activity" evidence=IEA;ISS

GO:0009561 "megagametogenesis" evidence=IMP

GO:0010584 "pollen exine formation" evidence=RCA

DICTYBASE|DDB_G0290139 DDB_G0290139 "peptidase S28 family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 261 (96.9 bits), Expect = 5.9e-22, P = 5.9e-22
 Identities = 56/155 (36%), Positives = 91/155 (58%)

Query:    11 GDFLYFLADAAVTAFQYGNPDKLCTPLVEAKNAGEDLVDAYAKFVKEYYLGSFGASVQT- 69
             GDF Y+LAD+ +   QYG  D+LC+PLV+A N+G   +D    +   Y + ++G  + T 
Sbjct:   253 GDFFYWLADSMMEGDQYGYIDELCSPLVDAINSGTSGIDLITVY-SNYTINTWGKVLGTP 311

Query:    70 --YNQKRLKN-TAVTDQSADRLWWFQVCTEVAFFQVAPANDSVRSSKVDTRYHLDLCKNV 126
               Y+    +N T    +SADR WW+Q C+ + + Q AP+ +S+RSS V+  Y    C+ +
Sbjct:   312 DEYSTAWQQNVTYDPSKSADRAWWYQTCSSLGWMQAAPSENSIRSSLVNMTYFQTHCQQL 371

Query:   127 FGEGIYP-DVDSTNIYYGGTKIAGSLASCIQTNFI 160
             FG+ I+P +V++ N  YGG + +  L +   TN +
Sbjct:   372 FGQAIWPPNVNAVNTQYGGDQ-SNPLLNAAGTNIL 405

GO:0005615 "extracellular space" evidence=IDA

GO:0008236 "serine-type peptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

DICTYBASE|DDB_G0278299 DDB_G0278299 "peptidase S28 family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 180 (68.4 bits), Expect = 7.3e-13, P = 7.3e-13
 Identities = 44/151 (29%), Positives = 73/151 (48%)

Query:    13 FLYFLADAAVTAFQYGNPDKL----CTPLVEAKNAGEDLVDAYAKFVKEYYLGSFGASVQ 68
             FLY L++A   + QY    K+    C   V+  N+ E L+D ++ +VK  +L     S  
Sbjct:   285 FLYLLSEALTYSVQYDARFKIISGFCPKFVKLTNSSEALLDMFSSYVKNMFLFQ-NVSCD 343

Query:    69 TYNQKRLKNTAVTDQSADRLWWFQVCTEVAFFQVAPANDSVRSSKV-DTRYHLDLCKNVF 127
              YN     +  + D S  R W +Q+C E  +F V    DS +   + +  +  D+CK ++
Sbjct:   344 AYNLYEFASNEI-DYSGTRSWTWQLCREYGWFMVPSGPDSFKPQSLGECWWQNDVCKTLY 402

Query:   128 GEGIYPDVDSTNIYYGGTKIAGSLASCIQTN 158
             G  + P VD  N+ YG T     +++ + TN
Sbjct:   403 GRAMRPTVDRINMVYGSTNFK-YISNVLFTN 432

GO:0008236 "serine-type peptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

DICTYBASE|DDB_G0290409 DDB_G0290409 "peptidase S28 family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 148 (57.2 bits), Expect = 1.2e-09, P = 1.2e-09
 Identities = 39/144 (27%), Positives = 70/144 (48%)

Query:    13 FLYFLADAAVTAFQYGNP-----DKLCTPLVEAKNAGEDLVDAYAKFVKEYYLGSFGASV 67
             FLY + DA   + Q  NP     +  C  L++  N     V+ +A+ V           +
Sbjct:   264 FLYSITDALGGSDQMNNPPTWILNSTCQMLLQNTN----YVNNWAQIVNVGQTQCNDFRL 319

Query:    68 QTYNQKRLKNTAVTDQSADRLWWFQVCTEVAFFQVAPANDSVRSSKVDTRYHLDLCKNVF 127
             +++ ++ L++ ++ D S +R+W +Q C E  +F  A    SV    ++       C+ ++
Sbjct:   320 KSFIEQ-LRDISINDNSDNRMWTYQTCVEFGYFSTAYPGTSVFPPVLNVEEQTKWCEEIY 378

Query:   128 G-EGIYPDVDSTNIYYGGTKIAGS 150
                G+ P++D+TN YYGG  I GS
Sbjct:   379 DIPGMTPNIDATNNYYGGQNIQGS 402

GO:0005615 "extracellular space" evidence=IDA

GO:0008236 "serine-type peptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

WB|WBGene00003957 pcp-2 [Caenorhabditis elegans (taxid:6239)]

 Score = 128 (50.1 bits), Expect = 5.5e-07, P = 5.5e-07
 Identities = 40/146 (27%), Positives = 63/146 (43%)

Query:    10 EGDFLYFLADAAVTAFQYGNPDKLCTPLVEAKNAGEDLVDAYAKFVKEYYLGS---FGAS 66
             +GD  Y   +    A  YG PD +C  +    N   + + A+ +++  +Y G    FG  
Sbjct:   804 QGDVQYSGDNMGSYANSYGIPD-MCKIMTNDSNTPLNNIVAFNEYMANFYNGGGPYFGLD 862

Query:    67 VQTYNQ--KRLKNTAV--TDQSADRLWWFQVCTEVAFFQVAPANDSVRSSKVDTRYHLDL 122
               +Y      L N      D  A  LW +Q C+E  +FQ A + + +  S     + + +
Sbjct:   863 -NSYQDMINFLINAKDFGPDAEASLLWTWQTCSEFGYFQSADSGNGIFGSPTPVNFFIQI 921

Query:   123 CKNVFGE-----GIYPDVDSTNIYYG 143
             C +VF        I P VD+TN  YG
Sbjct:   922 CMDVFNNYYQRSAIDPMVDNTNYMYG 947

GO:0006508 "proteolysis" evidence=IEA

GO:0008236 "serine-type peptidase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

WB|WBGene00019682 K12H4.7 [Caenorhabditis elegans (taxid:6239)]

 Score = 108 (43.1 bits), Expect = 0.00069, P = 0.00069
 Identities = 32/106 (30%), Positives = 50/106 (47%)

Query:    53 KFVKEYY---LGSFGASVQTYNQ--KRLKNTAVTDQSADRLWWFQVCTEVAFFQV---AP 104
             K V +Y+    G FG +   YN     +K+    +  +DR W +Q CTE  ++Q    A 
Sbjct:   330 KQVNDYFNQVSGYFGCNDIDYNGFISFMKDETFGEAQSDRAWVWQTCTEFGYYQSTSSAT 389

Query:   105 ANDSVRS-SKVDTRYHLDLCKNVFG-----EGIYPDVDSTNIYYGG 144
             A       S +  +Y++D C  ++G     + +   VD TN YYGG
Sbjct:   390 AGPWFGGVSNLPAQYYIDECTAIYGAAYNSQEVQTSVDYTNQYYGG 435

GO:0006508 "proteolysis" evidence=IEA

GO:0008236 "serine-type peptidase activity" evidence=IEA

UNIPROTKB|P34528 K12H4.7 "Putative serine protease K12H4.7" [Caenorhabditis elegans (taxid:6239)]

 Score = 108 (43.1 bits), Expect = 0.00069, P = 0.00069
 Identities = 32/106 (30%), Positives = 50/106 (47%)

Query:    53 KFVKEYY---LGSFGASVQTYNQ--KRLKNTAVTDQSADRLWWFQVCTEVAFFQV---AP 104
             K V +Y+    G FG +   YN     +K+    +  +DR W +Q CTE  ++Q    A 
Sbjct:   330 KQVNDYFNQVSGYFGCNDIDYNGFISFMKDETFGEAQSDRAWVWQTCTEFGYYQSTSSAT 389

Query:   105 ANDSVRS-SKVDTRYHLDLCKNVFG-----EGIYPDVDSTNIYYGG 144
             A       S +  +Y++D C  ++G     + +   VD TN YYGG
Sbjct:   390 AGPWFGGVSNLPAQYYIDECTAIYGAAYNSQEVQTSVDYTNQYYGG 435

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008236 "serine-type peptidase activity" evidence=NAS

DICTYBASE|DDB_G0274663 DDB_G0274663 "peptidase S28 family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 107 (42.7 bits), Expect = 0.00086, P = 0.00086
 Identities = 31/130 (23%), Positives = 59/130 (45%)

Query:    25 FQYGNPDKLCTPLVEAKNAGEDLVD---AYAKFV-KEYYLGSFGASVQTYNQKRLKNTAV 80
             + + N   +C    ++ +  ++ +D    Y +F   +  L S+  S+Q       K+   
Sbjct:   291 YTFTNITAMCERFEQSSDPMKEFIDFNNEYNQFSGSQCTLSSYEKSIQYLQSSNYKSA-- 348

Query:    81 TDQSADRLWWFQVCTEVAFFQVAPANDSVRSSKVDTRYHLDLCKNVFG-EG-IY-PDVDS 137
                ++ R W +Q CTE  ++Q   + +   SS +   Y   +C ++FG +G +Y P +  
Sbjct:   349 --NASSRSWNWQCCTEYGYWQTGSSQNQPFSSAITLEYFTQMCTDIFGPKGFVYQPAIQY 406

Query:   138 TNIYYGGTKI 147
                 YGGT I
Sbjct:   407 ILNDYGGTNI 416


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.135   0.411    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      171       171   0.00090  108 3  11 22  0.38    32
                                                     31  0.47    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  10
  No. of states in DFA:  597 (63 KB)
  Total size of DFA:  157 KB (2094 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  14.65u 0.10s 14.75t   Elapsed:  00:00:01
  Total cpu time:  14.65u 0.10s 14.75t   Elapsed:  00:00:01
  Start:  Mon May 20 19:19:22 2013   End:  Mon May 20 19:19:23 2013

GO:0005615 "extracellular space" evidence=IDA

GO:0008236 "serine-type peptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	171
pfam05577	433	pfam05577, Peptidase_S28, Serine carboxypeptidase	1e-09

>gnl|CDD|218645 pfam05577, Peptidase_S28, Serine carboxypeptidase S28

 Score = 55.8 bits (135), Expect = 1e-09
 Identities = 34/127 (26%), Positives = 49/127 (38%), Gaps = 15/127 (11%)

Query: 31  DKLCTPLVEAKNAGEDLVDAYAKFVKEY---YLGSFGASVQTYNQKRLKNTAVTDQS--- 84
             LC  ++ A      L       +  Y     G+      +Y    L N +  D S   
Sbjct: 247 PDLCKIMLNATTTDLILRVEVLIQLFNYLNQKSGNNSTMDISYQ---LANASYGDSSGSY 303

Query: 85  -ADRLWWFQVCTEVAFFQVAPANDSVRSSKVDTRYHLDLCKNVFG-----EGIYPDVDST 138
             DR W +Q CTE  ++Q   + +    S V     +D+C +VFG       I   V +T
Sbjct: 304 ADDRQWTWQTCTEFGWYQTTDSGNGPFGSPVPASLFIDMCMDVFGADYNSTKISLRVSAT 363

Query: 139 NIYYGGT 145
           N YYGG 
Sbjct: 364 NYYYGGA 370

These serine proteases include several eukaryotic enzymes such as lysosomal Pro-X carboxypeptidase, dipeptidyl-peptidase II, and thymus-specific serine peptidase. Length = 433

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	171
KOG2182	514	consensus Hydrolytic enzymes of the alpha/beta hyd	100.0
PF05577	434	Peptidase_S28: Serine carboxypeptidase S28; InterP	99.97
KOG2183	492	consensus Prolylcarboxypeptidase (angiotensinase C	99.93
PF05576	448	Peptidase_S37: PS-10 peptidase S37; InterPro: IPR0	96.5

>KOG2182 consensus Hydrolytic enzymes of the alpha/beta hydrolase fold [Posttranslational modification, protein turnover, chaperones; General function prediction only]

Probab=100.00  E-value=2.6e-36  Score=252.78  Aligned_cols=153  Identities=29%  Similarity=0.448  Sum_probs=127.2

Q ss_pred             hHHHHHHHHHHHHhhhcCC-----------hhhccHhhHhccccChhHHHHHHHHHHHHhccccCCcccccc--h--hhh
Q 030817           11 GDFLYFLADAAVTAFQYGN-----------PDKLCTPLVEAKNAGEDLVDAYAKFVKEYYLGSFGASVQTYN--Q--KRL   75 (171)
Q Consensus        11 ~df~~~l~~~~~~~~Qy~~-----------~~~~C~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~--~~~   75 (171)
                      ..|+..|.+.|+++|||..           ++++|+.|.+.  ...+.+.++.++++.+.... +..|.+++  .  ..+
T Consensus       275 ~~ff~nv~~~FqgvvQY~gd~~~~~~~~~~i~~~C~~l~n~--t~~d~v~~~~~~~~~~~~~~-~~~c~~~~Y~~~i~~~  351 (514)
T KOG2182|consen  275 HNFFSNVYSNFQGVVQYSGDNSNATASGLGIPAMCDILNNK--TPGDDVVAVNKYMNWFNNGF-GYGCLDNTYNGMISYL  351 (514)
T ss_pred             HHHHHHHHHhhhhheeecCCCCcccccccChhHHHHHhhcC--CCCchHHHHHHHHHHHHhcc-CCCcCCccHHHHHHHh
Confidence            3488999999999999963           47899999984  56788999999999876543 33455443  2  456


Q ss_pred             hccCCCC--CCCCcceeecccccccccccCCCCCCCCccCCCchhHHHHHHhhcCC-----CCCcCHHHHHHhhCC-CCC
Q 030817           76 KNTAVTD--QSADRLWWFQVCTEVAFFQVAPANDSVRSSKVDTRYHLDLCKNVFGE-----GIYPDVDSTNIYYGG-TKI  147 (171)
Q Consensus        76 ~~~~~~~--~~~~R~W~~QtCtE~g~fqt~~~~~~~fs~~i~~~~~~~~C~~~Fg~-----~~~p~v~~tN~~yGG-~~~  147 (171)
                      +++....  ..++|+|+||||||||||||+++++++|+..++++||+++|+++||.     .+.+.|+.||.+||| .++
T Consensus       352 ~n~~~~~~~~~a~r~W~wQtCtEfG~yQttds~~~iFgs~vp~~~fid~C~dlFG~~y~~~~i~~~V~~TN~~YGG~~~~  431 (514)
T KOG2182|consen  352 KNSTEPGEDAAADRLWTWQTCTEFGYYQTTDSGNSIFGSTVPLDYFIDLCMDLFGAEYTAKGIDPNVDQTNYKYGGRDNY  431 (514)
T ss_pred             hcccCcCcccccchhhhhhhcccceeeEecCCCCccccCCCChHHHHHHHHHHhCchhhhhHHHHHHHHhhhhcCccccc
Confidence            6544332  24689999999999999999999999999999999999999999994     578899999999999 589


Q ss_pred             CCCeEEEeCCCCCcccccC
Q 030817          148 AGSLASCIQTNFISRYAFI  166 (171)
Q Consensus       148 ~~sniif~nG~~d~~~~~~  166 (171)
                      +++||+|+||++|||.+.+
T Consensus       432 ~atnVvf~NG~~DPWh~LG  450 (514)
T KOG2182|consen  432 NATNVVFPNGSLDPWHALG  450 (514)
T ss_pred             CcceEEecCCCCCchhhhc
Confidence            9999999999999998754

>PF05577 Peptidase_S28: Serine carboxypeptidase S28; InterPro: IPR008758 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=99.97  E-value=2e-33  Score=238.56  Aligned_cols=165  Identities=30%  Similarity=0.438  Sum_probs=92.1

Q ss_pred             CC-cccCCCh--hH---HHHHHHHHHHHhhhcCC------------hhhccHhhHhccccChhHHHHHHHHHHHHhccc-
Q 030817            2 FD-AAELEIE--GD---FLYFLADAAVTAFQYGN------------PDKLCTPLVEAKNAGEDLVDAYAKFVKEYYLGS-   62 (171)
Q Consensus         2 F~-~~~l~~~--~d---f~~~l~~~~~~~~Qy~~------------~~~~C~~l~~~~~~~~~~l~~~~~~~~~~~~~~-   62 (171)
                      |+ |..+...  .|   |+..++..++.++||++            +..+|+.|++.  ...+.+.++..+.+.+..-. 
T Consensus       200 f~~~~~~~~~~~~d~~~~~~~~~~~~~~~~qy~~~~~~~~~~~~~~i~~~C~~l~~~--~~~~~~~~~~~~~~~~~~~~~  277 (434)
T PF05577_consen  200 FKLCFPLDDKNDDDFAYFFSSIADAFQGMVQYPYPGNFNSPLPAWPIRQLCDSLTNA--SWPDEVLRLAALAQWYNNFNT  277 (434)
T ss_dssp             CTBSS---TCHCHHHHHHHHHHHHHHHHHT--SS-EESSSEE-SSHHHHHHHHCHTS--SSHHHHHHHHHHHHHHCCCH-
T ss_pred             hhhccccccccchHHHHHHHHHHHHHHHHHhcCCCcccccCCCCcchHHHhhhhccc--ccCchhHHHHHHHHHHHHhcC
Confidence            66 3555432  44   55567788888999952            57999999976  33344444444433321111 


Q ss_pred             -c-CCcccccch----hhhhccCCCCCCCCcceeecccccccccccCCCCCCCCccCCCchhHHHHHHhhcCCC-----C
Q 030817           63 -F-GASVQTYNQ----KRLKNTAVTDQSADRLWWFQVCTEVAFFQVAPANDSVRSSKVDTRYHLDLCKNVFGEG-----I  131 (171)
Q Consensus        63 -~-~~~~~~~~~----~~~~~~~~~~~~~~R~W~~QtCtE~g~fqt~~~~~~~fs~~i~~~~~~~~C~~~Fg~~-----~  131 (171)
                       + ...|.+...    ....+..+++..++|+|.||+|||||||||+++..++|+++++++++.++|+++||+.     +
T Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~W~wQtCtE~G~fqt~~~~~~l~~~~~~l~~~~~~C~~~Fg~~~~~~~i  357 (434)
T PF05577_consen  278 TCYSNSCADFDYNCFDSTYDDSSFDDNADDRQWLWQTCTEFGYFQTADGPNSLFSRLVNLDYYQDQCQDVFGPGPNPESI  357 (434)
T ss_dssp             SCCHHCCC--SS-BSSTT---SS----HHHHHHHHHHCCT-B----B-SSSSSS-B---HHHHHHHHHHHHS----T---
T ss_pred             ccccccccccccccccCCCCcccccccccchhhHHHhhhhccceeccCCCCCcccCCCCHHHHHHHHHHHhCCCcccccc
Confidence             1 111222211    1112222211235799999999999999999998899999999999999999999863     4


Q ss_pred             CcCHHHHHHhhCC-CCCCCCeEEEeCCCCCcccccCCC
Q 030817          132 YPDVDSTNIYYGG-TKIAGSLASCIQTNFISRYAFIPH  168 (171)
Q Consensus       132 ~p~v~~tN~~yGG-~~~~~sniif~nG~~d~~~~~~~~  168 (171)
                      .++++++|.+||| ++++++||+|+||++|||++++..
T Consensus       358 ~~~~~~tN~~YGG~~~~~~tnviFtNG~~DPW~~lgv~  395 (434)
T PF05577_consen  358 PPNVDWTNNYYGGWWNPNATNVIFTNGELDPWRALGVT  395 (434)
T ss_dssp             ---TCHHHHHHTTT--TT--SEEEEEETT-CCGGGS--
T ss_pred             ccchhHHhheeCccccCCCCeEEeeCCCCCCcccccCC
Confidence            5589999999999 899999999999999999999854

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S28 (clan SC). The predicted active site residues for members of this family and family S10 occur in the same order in the sequence: S, D, H. These serine proteases include several eukaryotic enzymes such as lysosomal Pro-X carboxypeptidase, dipeptidyl-peptidase II, and thymus-specific serine peptidase [, , , ].; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3N2Z_B 3JYH_A 3N0T_C.

>KOG2183 consensus Prolylcarboxypeptidase (angiotensinase C) [Posttranslational modification, protein turnover, chaperones; General function prediction only]

Probab=99.93  E-value=3.7e-26  Score=188.09  Aligned_cols=156  Identities=18%  Similarity=0.233  Sum_probs=128.7

Q ss_pred             CC-cccCC-ChhHHHHHHHHHHHH--hhhcCC------------hhhccHhhHhccccChhHHHHHHHHHHHHhccccCC
Q 030817            2 FD-AAELE-IEGDFLYFLADAAVT--AFQYGN------------PDKLCTPLVEAKNAGEDLVDAYAKFVKEYYLGSFGA   65 (171)
Q Consensus         2 F~-~~~l~-~~~df~~~l~~~~~~--~~Qy~~------------~~~~C~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~   65 (171)
                      |+ |..|+ +..++..+|.+++..  ||||++            ++++|+.|........+.|+++.+.+..+||.+++.
T Consensus       257 f~lc~~ln~d~~~l~d~l~ea~~ylAMVdYPy~t~Fl~pLPa~PV~~~C~~i~~~~~~~~~ll~~i~a~~~~yyNytg~~  336 (492)
T KOG2183|consen  257 FKLCKPLNDDIGDLKDYLREAYEYLAMVDYPYPTSFLAPLPAWPVKVVCKYINAPGPNDSDLLDRIFAAVNLYYNYTGSE  336 (492)
T ss_pred             hhhcccccccHHHHHHHHHHHHHHHHHhcCCCCccccCcCCCCcHHHHHHHhccCCCChHHHHHHHHHHhhheeccCCCc
Confidence            55 57777 556778888866544  888873            479999998764344788999999999999888778


Q ss_pred             cccccchhhhhccCCCCCCCCcceeecccccccccccCCCCCCCCc-cCCCchhHHHHHHhhcCCCCCcCHHHHHHhhCC
Q 030817           66 SVQTYNQKRLKNTAVTDQSADRLWWFQVCTEVAFFQVAPANDSVRS-SKVDTRYHLDLCKNVFGEGIYPDVDSTNIYYGG  144 (171)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~R~W~~QtCtE~g~fqt~~~~~~~fs-~~i~~~~~~~~C~~~Fg~~~~p~v~~tN~~yGG  144 (171)
                      .|.+.+     +.+.....+.|.|.||+|||+.+..++++.+.||+ -+++.+.+.+.|.+.||  +.|+++|++.+|||
T Consensus       337 ~C~d~s-----d~t~~~~~d~~gW~~QaCtEmVMp~~~ng~~~mf~~~~fn~~~y~e~C~~~~~--v~prP~wi~t~fgg  409 (492)
T KOG2183|consen  337 KCYDIS-----DPTYGSGLDDLGWPWQACTEMVMPMCSNGVDDMFPDCPFNSESYQEGCMQTFG--VTPRPKWITTEFGG  409 (492)
T ss_pred             chhccc-----cccCCCCCCcCCCchhhhhhhhhccccCCCcccCCCCCCCHHHHHHHHHHhcC--CCCCCcceehhhcc
Confidence            888764     12222234679999999999999999999899995 58999999999999999  89999999999999


Q ss_pred             CCCCC-CeEEEeCCCCCcccc
Q 030817          145 TKIAG-SLASCIQTNFISRYA  164 (171)
Q Consensus       145 ~~~~~-sniif~nG~~d~~~~  164 (171)
                      .++.+ |||||+||.+|||--
T Consensus       410 ~~l~~~SNiIFSNG~LDPWSG  430 (492)
T KOG2183|consen  410 ADLSAFSNIIFSNGLLDPWSG  430 (492)
T ss_pred             ccchhhcceeeeCCCcCCccC
Confidence            88765 899999999999964

>PF05576 Peptidase_S37: PS-10 peptidase S37; InterPro: IPR008761 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.50  E-value=0.0071  Score=51.32  Aligned_cols=71  Identities=14%  Similarity=0.066  Sum_probs=41.4

Q ss_pred             CcceeecccccccccccCCCCCCCCccCCCchhHHHHHHhh---------cCCCCCcCHHHHHHhhCCCCCCCCeEEEeC
Q 030817           86 DRLWWFQVCTEVAFFQVAPANDSVRSSKVDTRYHLDLCKNV---------FGEGIYPDVDSTNIYYGGTKIAGSLASCIQ  156 (171)
Q Consensus        86 ~R~W~~QtCtE~g~fqt~~~~~~~fs~~i~~~~~~~~C~~~---------Fg~~~~p~v~~tN~~yGG~~~~~sniif~n  156 (171)
                      --..+||.=||+||+....+.  +...++...+.   =...         |.+...++|+..-.      -+++|+|||+
T Consensus       290 y~pyyyQA~teLG~p~~~~~h--l~~~ll~~g~~---~~r~fvP~~i~m~Fdp~am~dI~~Wvr------~~~~rmlFVY  358 (448)
T PF05576_consen  290 YTPYYYQAGTELGYPGYDTPH--LRKKLLRYGYQ---PPRNFVPRDIPMKFDPTAMRDIDRWVR------NNGPRMLFVY  358 (448)
T ss_pred             ccChHHHHHhhcCCCCCCCcc--hhccccccCCC---CcccCCCCCCCCCcCHHHHHHHHHHHH------hCCCeEEEEe
Confidence            468999999999998654322  11111111110   0122         32222334443332      3679999999


Q ss_pred             CCCCcccccCC
Q 030817          157 TNFISRYAFIP  167 (171)
Q Consensus       157 G~~d~~~~~~~  167 (171)
                      |+.|||.|..-
T Consensus       359 G~nDPW~A~~f  369 (448)
T PF05576_consen  359 GENDPWSAEPF  369 (448)
T ss_pred             CCCCCcccCcc
Confidence            99999998754

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. These group of serine peptidases belong to MEROPS peptidase family S37 (clan SC). The members of this group of secreted peptidases are restricted to bacteria. In Streptomyces lividans the peptidase removes tripeptides from the N terminus of extracellular proteins (tripeptidyl aminopeptidase,Tap) [, ].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	171
3jyh_A	469	Dipeptidyl-peptidase 2; structural genomics, struc	3e-13
3n2z_B	446	Lysosomal Pro-X carboxypeptidase; alpha/beta hydro	3e-11

>3jyh_A Dipeptidyl-peptidase 2; structural genomics, structural genomics consortium, SGC, aminopeptidase, cleavage on PAIR of basic residues; HET: NAG BMA; 2.19A {Homo sapiens} PDB: 3n0t_A* Length = 469

 Score = 65.7 bits (159), Expect = 3e-13
 Identities = 28/168 (16%), Positives = 41/168 (24%), Gaps = 19/168 (11%)

Query: 1   MFDAAELEIEGDFLYFLADAAVTAF------QYGNPDKLCTPL--------VEAKNAGED 46
            F   +   +   L  L   A  AF       Y  P     PL         +   +   
Sbjct: 219 EFGTCQPLSDEKDLTQLFMFARNAFTVLAMMDYPYPTDFLGPLPANPVKVGCDRLLSEAQ 278

Query: 47  LVDAYAKFVKEYYLGSFGASVQTYNQKRLKN---TAVTDQSADRLWWFQVCTEVAFFQVA 103
            +          Y  S         +        T        R W +Q CTE+     +
Sbjct: 279 RITGLRALAGLVYNASGSEHCYDIYRLYHSCADPTGCGTGPDARAWDYQACTEINLTFAS 338

Query: 104 PA-NDSVRSSKVDTRYHLDLCKNVFGEGIYPDVDSTNIYYGGTKIAGS 150
               D               C + +G    PD      ++GG   A S
Sbjct: 339 NNVTDMFPDLPFTDELRQRYCLDTWGVWPRPDWL-LTSFWGGDLRAAS 385

>3n2z_B Lysosomal Pro-X carboxypeptidase; alpha/beta hydrolase, PRCP, serine carboxypeptidase, hydrola; HET: NAG; 2.79A {Homo sapiens} Length = 446

 Score = 59.9 bits (144), Expect = 3e-11
 Identities = 26/134 (19%), Positives = 39/134 (29%), Gaps = 9/134 (6%)

Query: 15  YFLADAAVTAFQYGNPDKLCTPLVEAKNAGEDLVDAYAKFVKEYYLGSFGASVQTYNQKR 74
           Y  A   +          +C  L     +   L+    + +  YY               
Sbjct: 246 YPYASNFLQPLPAWPIKVVCQYLKNPNVSDSLLLQNIFQALNVYY-----NYSGQVKCLN 300

Query: 75  LKNTAVTDQSADRLWWFQVCTEVA-FFQVAPANDSVRSSKVDTRYHLDLCKNVFGEGIYP 133
           +  TA T       W +Q CTEV   F     +D       + +   D C   +  G+ P
Sbjct: 301 ISETA-TSSLGTLGWSYQACTEVVMPFCTNGVDDMFEPHSWNLKELSDDCFQQW--GVRP 357

Query: 134 DVDSTNIYYGGTKI 147
                   YGG  I
Sbjct: 358 RPSWITTMYGGKNI 371

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	171
3n2z_B	446	Lysosomal Pro-X carboxypeptidase; alpha/beta hydro	100.0
4ebb_A	472	Dipeptidyl peptidase 2; hydrolase; HET: MSE NAG; 2	99.96

>3n2z_B Lysosomal Pro-X carboxypeptidase; alpha/beta hydrolase, PRCP, serine carboxypeptidase, hydrola; HET: NAG; 2.79A {Homo sapiens}

Probab=100.00  E-value=2e-35  Score=250.40  Aligned_cols=160  Identities=16%  Similarity=0.181  Sum_probs=127.0

Q ss_pred             CCC-cccCCChhH---HHHHHHHHHHH--hhhcCC------------hhhccHhhHhccccChhHHHHHHHHHHHHhccc
Q 030817            1 MFD-AAELEIEGD---FLYFLADAAVT--AFQYGN------------PDKLCTPLVEAKNAGEDLVDAYAKFVKEYYLGS   62 (171)
Q Consensus         1 ~F~-~~~l~~~~d---f~~~l~~~~~~--~~Qy~~------------~~~~C~~l~~~~~~~~~~l~~~~~~~~~~~~~~   62 (171)
                      +|+ |++|++ .|   |+..|+++++.  ++||+.            +.++|+.|++...+..+.+++++++++.+++.+
T Consensus       215 ~F~lc~~l~~-~D~~~~~~~l~~~~~~~a~~~y~~~~~~~~~~p~~~v~~~C~~l~~~~~~~~~~~~~~~~~~~~~~n~~  293 (446)
T 3n2z_B          215 ALHLCSPLTS-QDIQHLKDWISETWVNLAMVDYPYASNFLQPLPAWPIKVVCQYLKNPNVSDSLLLQNIFQALNVYYNYS  293 (446)
T ss_dssp             HTTBSSCCCT-TSHHHHHHHHHHHHHHHHHTCCSSCEESSSEECSSHHHHHHHHSCCCSCCHHHHHHHHHHHHHHHHHTT
T ss_pred             HhCCCCCCCH-HHHHHHHHHHHHHHhhhhhcccccccccccCCCCccHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcC
Confidence            488 478865 45   66788888865  677752            478999998653234577899999988877654


Q ss_pred             cCCcccccchhhhhccCCCCCCCCcceeecccccccccccCCCCCCCC-ccCCCchhHHHHHHhhcCCCCCcCHHHHHHh
Q 030817           63 FGASVQTYNQKRLKNTAVTDQSADRLWWFQVCTEVAFFQVAPANDSVR-SSKVDTRYHLDLCKNVFGEGIYPDVDSTNIY  141 (171)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~R~W~~QtCtE~g~fqt~~~~~~~f-s~~i~~~~~~~~C~~~Fg~~~~p~v~~tN~~  141 (171)
                      ....|.+.+...     . ...++|+|.||+|||||||||+++.+++| +++++++++.++|+++||  +.|+++++|.+
T Consensus       294 ~~~~C~~~~~~~-----~-~~~~~r~W~yQ~CtE~g~~~t~~~~~~~f~~~~~~~~~~~~~C~~~Fg--~~p~~~~~~~~  365 (446)
T 3n2z_B          294 GQVKCLNISETA-----T-SSLGTLGWSYQACTEVVMPFCTNGVDDMFEPHSWNLKELSDDCFQQWG--VRPRPSWITTM  365 (446)
T ss_dssp             SCCSSBCCCC----------CHHHHHHHHHHHHTCCCCCCBCSSSSSSCCBCCCHHHHHHHHHHHHS--CCCCTTHHHHH
T ss_pred             CCCCCcCcCcCc-----C-CCccccceeeeecCCccccccCCCCCCcCcCCcCCHHHHHHHHHHHhC--CCCcHHHHHHH
Confidence            445676553211     1 12357999999999999999998888899 579999999999999999  78999999999


Q ss_pred             hCCCCC-CCCeEEEeCCCCCcccccCCCC
Q 030817          142 YGGTKI-AGSLASCIQTNFISRYAFIPHH  169 (171)
Q Consensus       142 yGG~~~-~~sniif~nG~~d~~~~~~~~~  169 (171)
                      |||+++ .++||||+||++|||++++++.
T Consensus       366 yGG~~~~~~sniif~NG~~DPW~~~gv~~  394 (446)
T 3n2z_B          366 YGGKNISSHTNIVFSNGELDPWSGGGVTK  394 (446)
T ss_dssp             HCTTCCTTCCCEEEEEESSCGGGGGSCCS
T ss_pred             hccccCCCCCeEEEeCCCcCCcccccccc
Confidence            999995 6799999999999999999864

>4ebb_A Dipeptidyl peptidase 2; hydrolase; HET: MSE NAG; 2.00A {Homo sapiens} PDB: 3jyh_A* 3n0t_A*

Probab=99.96  E-value=6.3e-29  Score=211.99  Aligned_cols=163  Identities=17%  Similarity=0.155  Sum_probs=114.0

Q ss_pred             CC-cccCCChhHH---HHHHHHHHHHhhh--cCC------------hhhccHhhHhccccChhHHHHHHHHHHHHhcccc
Q 030817            2 FD-AAELEIEGDF---LYFLADAAVTAFQ--YGN------------PDKLCTPLVEAKNAGEDLVDAYAKFVKEYYLGSF   63 (171)
Q Consensus         2 F~-~~~l~~~~df---~~~l~~~~~~~~Q--y~~------------~~~~C~~l~~~~~~~~~~l~~~~~~~~~~~~~~~   63 (171)
                      |+ |+++.+..|+   +..+.++++.++|  |..            +..+|+.|.+.    .+.+.++..++..+++..+
T Consensus       217 f~~c~~~~~~~d~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~----~~~~~~~~~~~~~~~~~~~  292 (472)
T 4ebb_A          217 FGTCQPLSDEKDLTQLFMFARNAFTVLAMMDYPYPTDFLGPLPANPVKVGCDRLLSE----AQRITGLRALAGLVYNASG  292 (472)
T ss_dssp             HTBSSCCCSHHHHHHHHHHHHHHHHHHHHTCCSSCEESSSEECSSHHHHHHHHHHTC----SSHHHHHHHHHHHHHCTTS
T ss_pred             hcCCCCCCChHHHHHHHHHHHHHHHHHhhhccccchhhcccCccchHHHHHHHhccc----chHHHHHHHHHHHHhhccC
Confidence            45 6788776664   4455566655444  432            35678888754    2456667777666666554


Q ss_pred             CCcccccchhhhhccCCC---CCCCCcceeecccccccccccCCCCCCCC-ccCCCchhHHHHHHhhcCCCCCcCHHHHH
Q 030817           64 GASVQTYNQKRLKNTAVT---DQSADRLWWFQVCTEVAFFQVAPANDSVR-SSKVDTRYHLDLCKNVFGEGIYPDVDSTN  139 (171)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~---~~~~~R~W~~QtCtE~g~fqt~~~~~~~f-s~~i~~~~~~~~C~~~Fg~~~~p~v~~tN  139 (171)
                      ...|.+.........+.+   ...++|+|.||+||||||||++++.+++| +++++++++.++|+++||....|++. +|
T Consensus       293 ~~~c~~~~~~~~~~~~~~~~~~~~~~r~W~yQ~CtE~g~~~~~~~~~~~f~~~~~~~~~~~~~C~~~fg~~~~~~~~-~~  371 (472)
T 4ebb_A          293 SEHCYDIYRLYHSCADPTGCGTGPDARAWDYQACTEINLTFASNNVTDMFPDLPFTDELRQRYCLDTWGVWPRPDWL-LT  371 (472)
T ss_dssp             CCSSBCHHHHCCCCSSTTCCCSSHHHHHHHHHHTTTCCCCCCBCSSSSSSCCBCCCHHHHHHHHHHHHSCCCCTTHH-HH
T ss_pred             CcchhhhhhhhhhccCCcccCCCCCcccccccccccccccccCCCCCCcCCCCCCcHHHHHHHHHHHhCCCCChhHH-HH
Confidence            555654321111111111   11236999999999999999999888887 56899999999999999965555554 45


Q ss_pred             HhhCCCCCCCCeEEEeCCCCCcccccCCCC
Q 030817          140 IYYGGTKIAGSLASCIQTNFISRYAFIPHH  169 (171)
Q Consensus       140 ~~yGG~~~~~sniif~nG~~d~~~~~~~~~  169 (171)
                      .+|||.+++++||||+||++|||++++++.
T Consensus       372 ~~~Gg~~~~~sniiF~nG~~DPW~~~gv~~  401 (472)
T 4ebb_A          372 SFWGGDLRAASNIIFSNGNLDPWAGGGIRR  401 (472)
T ss_dssp             HHCTTCCTTCCSEEEEEETTCTTGGGSCCS
T ss_pred             HhcCCcCCCCCeEEEECCCcCCCcCccCCC
Confidence            678888999999999999999999999864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00