Citrus Sinensis ID: 030903

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------17
Protein Sequence
MLAISVSKFTNPDIILSSTPANTPKFSLFSPACPPIFSKFPSCPHPITHSHKKTLTLAFSQSFEAEEELPSTEDEWLEKLPEKNKPLYSHSLPCIEAWLRSLGFHQSSDDRAVWLVEKHDWHAQLSLDMTDLYIRYLKNGPGNLEKDIERRFSYALSREDIENAILGGP
Secondary Structure (PSIPRED)
cccccccEEcccccccccccccccccccccccccccccccccccccccccccccccEEccccHHHHHcccccHHHHHHcccccccccccccHHHHHHHHHHcccccccccccEEEEEccccEEEEEEEEEEEEEEEEEcccccccccEEEEccccccHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccEEEEEEEEcccEEEcccccccccEccccccccccccccccccccccccccccccEEEccccHHHHcccccHHHHHHHccccccccccccHHHHHHHHHHcccccccccccEEEEEccccEEEEEEEccEEEEEEEcccccccccHHHHcccccccHHHHHHHHHccc
Coil and Loop (DISEMBL)
mlaisvskftnpdiilsstpantpkfslfspacppifskfpscphpithshkktLTLAFSQsfeaeeelpsteDEWLEklpeknkplyshslPCIEAWLRSlgfhqssdDRAVWLVEKHDWHAQLSLDMTDLYIRYLkngpgnlekDIERRFSYALSREDIENAILGGP
Flexible Loop (DISEMBL)
mlaisvskftnpdiilsstpantpkFSLFSPACPPIFSKFPSCPHPITHSHKKTLTLAFSQSFEAEEELPSTEDEWLEKLPEKNKPLYSHSLPCIEAWLRSLGFHQSSDDRAVWLVEKHDWHAQLSLDMTDLYIRYLKngpgnlekdiERRFSyalsredienailggp
Low Complexity Region (SEG)
MLAISVSKFTNPDIILSSTPANTPKFSLFSPACPPIFSKFPSCPHPITHSHKKTLTLAFSQSFEAEEELPSTEDEWLEKLPEKNKPLYSHSLPCIEAWLRSLGFHQSSDDRAVWLVEKHDWHAQLSLDMTDLYIRYLKNGPGNLEKDIERRFSYALSREDIENAILGGP
Disordered region (IsUnstruct)
*************II**********FSLFSPACPPIFSKFPSCPHPIT******LTL*****************************LYSHSLPCIEAWLRSLGFHQSSDDRAVWLVEKHDWHAQLSLDMTDLYIRYLKNGPGNLEKDIERRFSYAL*************
Disordered Region (DISOPRED)
******S*FTNPDII***************PA**********************************************KLPEKNKPLYSHSLPCIEAWLRSLGFHQSSDDRAVWLVEKHDWHAQLSLDMTDLYIRYLKNG******DIERRFSYALSREDIENAILGGP
Disordered Region (DISEMBL)
MLAISVSKFTNPDIILSSTPANTPKFSLFSPACPPIFSKFPSCPHPITHSHKKTLTLAFSQS*************WLEKLPEKNKPLYSHSLPCIEAWLRSLGFHQSSDDRAVWLVEKHDWHAQLSLDMTDLYIRYLKNGPGNLEKDIERRFSYALSREDIENAILGGP
Disordered Region (DISPRO)
*LAISVSKFTNPDIILSSTPANTPKFSLFSPACPPIFSKFPSCPHPITHSHKKTLTLAFSQS********STEDEWLEKLPEKNKPLYSHSLPCIEAWLRSLGFHQSSDDRAVWLVEKHDWHAQLSLDMTDLYIRYLKNGPGNLEKDIERRFSYALSREDIENAILGGP
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLAISVSKFTNPDIILSSTPANTPKFSLFSPACPPIFSKFPSCPHPITHSHKKTLTLAFSQSFEAEEELPSTEDEWLEKLPEKNKPLYSHSLPCIEAWLRSLGFHQSSDDRAVWLVEKHDWHAQLSLDMTDLYIRYLKNGPGNLEKDIERRFSYALSREDIENAILGGP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	169
224118136	170	predicted protein [Populus trichocarpa]	0.958	0.952	0.644	8e-53
224140469	173	predicted protein [Populus trichocarpa]	0.893	0.872	0.651	1e-48
15237317	170	uncharacterized protein [Arabidopsis tha	0.698	0.694	0.781	3e-48
297792637	170	hypothetical protein ARALYDRAFT_918349 [	0.698	0.694	0.773	5e-47
388503502	168	unknown [Lotus japonicus]	0.982	0.988	0.596	3e-46
356530784	168	PREDICTED: uncharacterized protein LOC10	0.644	0.648	0.8	1e-44
116784647	172	unknown [Picea sitchensis]	0.568	0.558	0.833	2e-43
255545092	170	conserved hypothetical protein [Ricinus	0.994	0.988	0.684	6e-43
225462677	155	PREDICTED: uncharacterized protein LOC10	0.917	1.0	0.650	3e-42
326508374	155	predicted protein [Hordeum vulgare subsp	0.562	0.612	0.821	1e-40

>gi|224118136|ref|XP_002317740.1| predicted protein [Populus trichocarpa] gi|222858413|gb|EEE95960.1| predicted protein [Populus trichocarpa]

 Score =  211 bits (537), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 107/166 (64%), Positives = 129/166 (77%), Gaps = 4/166 (2%)

Query: 7   SKFTNPDIILSSTPANTP---KFSLFSPACPPIFSKFPSCPHPITHSHKKTLTLAFSQSF 63
           S  T  +I+LSS P+ +    K S F    PP+FSK  SCP+P+    +    +   +S 
Sbjct: 6   SILTTTNILLSSHPSTSTHPSKVSYFPSLHPPLFSKSLSCPYPLCKFLRNPKRIISLKSS 65

Query: 64  EAEEELPSTEDEWLEKLPEKNKPLYSHSLPCIEAWLRSLGFHQSSDDRAVWLVEKHDWHA 123
           EAEE + STEDEWL++LP+K KPLYSHSLPCIEAWL+ LGF+QS +DRA+W +EK DWHA
Sbjct: 66  EAEE-ISSTEDEWLQRLPDKKKPLYSHSLPCIEAWLKDLGFYQSKEDRAIWFIEKPDWHA 124

Query: 124 QLSLDMTDLYIRYLKNGPGNLEKDIERRFSYALSREDIENAILGGP 169
           QLSLD+TDL+IRYLKNGPGNLEKD+ERRFSYALSREDIENAILGGP
Sbjct: 125 QLSLDVTDLFIRYLKNGPGNLEKDMERRFSYALSREDIENAILGGP 170

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140469|ref|XP_002323605.1| predicted protein [Populus trichocarpa] gi|222868235|gb|EEF05366.1| predicted protein [Populus trichocarpa]

 Score =  197 bits (502), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 99/152 (65%), Positives = 114/152 (75%), Gaps = 1/152 (0%)

Query: 18  STPANTPKFSLFSPACPPIFSKFPSCPHPITHSHKKTLTLAFSQSFEAEEELPSTEDEWL 77
           ST     K S FS   P +FSK  SCP+P+    +K   +  S+S E EE + ST DEWL
Sbjct: 23  STSTRASKVSHFSSLHPSLFSKSSSCPYPLCKFPRKPKRIVSSKSSEVEE-ISSTGDEWL 81

Query: 78  EKLPEKNKPLYSHSLPCIEAWLRSLGFHQSSDDRAVWLVEKHDWHAQLSLDMTDLYIRYL 137
           + LP+K KPLYSH+LPCIEAWL+ LGF+QS    AVW VEK DWHAQLSLD+TDLYIRYL
Sbjct: 82  QTLPDKKKPLYSHNLPCIEAWLKGLGFYQSKKSHAVWFVEKPDWHAQLSLDVTDLYIRYL 141

Query: 138 KNGPGNLEKDIERRFSYALSREDIENAILGGP 169
           KN PGNLEKD+E+RFSYALSREDIENA LGGP
Sbjct: 142 KNRPGNLEKDVEKRFSYALSREDIENATLGGP 173

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15237317|ref|NP_200108.1| uncharacterized protein [Arabidopsis thaliana] gi|8809585|dbj|BAA97136.1| unnamed protein product [Arabidopsis thaliana] gi|21553436|gb|AAM62529.1| unknown [Arabidopsis thaliana] gi|26449336|dbj|BAC41795.1| unknown protein [Arabidopsis thaliana] gi|28372880|gb|AAO39922.1| At5g52960 [Arabidopsis thaliana] gi|332008899|gb|AED96282.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  196 bits (498), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 93/119 (78%), Positives = 106/119 (89%), Gaps = 1/119 (0%)

Query: 51  HKKTLTLAFSQSFEAEEELPSTEDEWLEKLPEKNKPLYSHSLPCIEAWLRSLGFHQSSDD 110
            +K LTL  S+S +AEE +  TEDEWL+KLPEKNKPLYSHSLPCIEAWLR LGF+QS DD
Sbjct: 53  RRKPLTLVSSKSSDAEE-VSDTEDEWLKKLPEKNKPLYSHSLPCIEAWLRKLGFYQSKDD 111

Query: 111 RAVWLVEKHDWHAQLSLDMTDLYIRYLKNGPGNLEKDIERRFSYALSREDIENAILGGP 169
           RAVWL++K DWHAQLSLD+TDL IRY+K+GPGNLE+D+ERRFSYALSRED ENAILGGP
Sbjct: 112 RAVWLIQKPDWHAQLSLDVTDLCIRYMKSGPGNLERDMERRFSYALSREDTENAILGGP 170

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297792637|ref|XP_002864203.1| hypothetical protein ARALYDRAFT_918349 [Arabidopsis lyrata subsp. lyrata] gi|297310038|gb|EFH40462.1| hypothetical protein ARALYDRAFT_918349 [Arabidopsis lyrata subsp. lyrata]

 Score =  192 bits (487), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 92/119 (77%), Positives = 105/119 (88%), Gaps = 1/119 (0%)

Query: 51  HKKTLTLAFSQSFEAEEELPSTEDEWLEKLPEKNKPLYSHSLPCIEAWLRSLGFHQSSDD 110
            +K L L  S+S +AEE +  TEDEWL+KLPEKNKPLYSHSLPCIEAWL+ LGF+QS DD
Sbjct: 53  RRKPLILVSSKSSDAEE-VSDTEDEWLKKLPEKNKPLYSHSLPCIEAWLKKLGFYQSKDD 111

Query: 111 RAVWLVEKHDWHAQLSLDMTDLYIRYLKNGPGNLEKDIERRFSYALSREDIENAILGGP 169
           RAVWL++K DWHAQLSLD+TDL IRYLK+GPGNLE+D+ERRFSYALSRED ENAILGGP
Sbjct: 112 RAVWLIKKPDWHAQLSLDVTDLCIRYLKSGPGNLERDMERRFSYALSREDTENAILGGP 170

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388503502|gb|AFK39817.1| unknown [Lotus japonicus]

 Score =  189 bits (480), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 102/171 (59%), Positives = 120/171 (70%), Gaps = 5/171 (2%)

Query: 1   MLAISVSKFTNPDIIL--SSTPANTPKFSLFSPACPPIFSKFPSCPHPITHSHKKTLTLA 58
           M  IS S  TN ++ L  S    +T +F +F      +F K      P++ SH+K     
Sbjct: 1   MSIISSSTLTNSNVSLHPSLLTISTSQFPVFQTT---LFPKPFHFLQPLSFSHRKPTIPV 57

Query: 59  FSQSFEAEEELPSTEDEWLEKLPEKNKPLYSHSLPCIEAWLRSLGFHQSSDDRAVWLVEK 118
           F +S EA EE    EDEWL+KLPEK KPLY HSLPCIEAWL+SLGF QS  DRA+WLV K
Sbjct: 58  FCKSPEAAEEPSIPEDEWLQKLPEKTKPLYPHSLPCIEAWLKSLGFQQSKVDRAMWLVHK 117

Query: 119 HDWHAQLSLDMTDLYIRYLKNGPGNLEKDIERRFSYALSREDIENAILGGP 169
            DWHA L+LD+TDL IRYLK GPGNL+KD+ERRFSYALSREDIENA+LGGP
Sbjct: 118 PDWHAHLALDITDLNIRYLKTGPGNLDKDMERRFSYALSREDIENAVLGGP 168

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356530784|ref|XP_003533960.1| PREDICTED: uncharacterized protein LOC100801986 [Glycine max]

 Score =  184 bits (466), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 88/110 (80%), Positives = 99/110 (90%), Gaps = 1/110 (0%)

Query: 61  QSFEAEEELPS-TEDEWLEKLPEKNKPLYSHSLPCIEAWLRSLGFHQSSDDRAVWLVEKH 119
           +  EA+E  P   EDEWL+KLPEK+KPLYSHSLPCIEAWLRSLGF QS +DRA+W+V K 
Sbjct: 59  EGTEADEAAPPPEEDEWLQKLPEKSKPLYSHSLPCIEAWLRSLGFCQSKEDRALWVVHKP 118

Query: 120 DWHAQLSLDMTDLYIRYLKNGPGNLEKDIERRFSYALSREDIENAILGGP 169
           DWHAQLSLD+TDLYIRYLK+GPGNLEKD+ERRFSYALSREDIENA+LGGP
Sbjct: 119 DWHAQLSLDVTDLYIRYLKSGPGNLEKDVERRFSYALSREDIENAVLGGP 168

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116784647|gb|ABK23420.1| unknown [Picea sitchensis]

 Score =  179 bits (455), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 80/96 (83%), Positives = 92/96 (95%)

Query: 74  DEWLEKLPEKNKPLYSHSLPCIEAWLRSLGFHQSSDDRAVWLVEKHDWHAQLSLDMTDLY 133
           DEW++KLPEKNK LYSHSLPCIEAWLRSLGF+QS +DRAVW +EK +WHAQLSLD+TDLY
Sbjct: 77  DEWIQKLPEKNKALYSHSLPCIEAWLRSLGFYQSKEDRAVWHIEKPEWHAQLSLDITDLY 136

Query: 134 IRYLKNGPGNLEKDIERRFSYALSREDIENAILGGP 169
           IRYLK+GPGNLE+D+ER+FSYALSRED+ENAILGGP
Sbjct: 137 IRYLKSGPGNLERDVERKFSYALSREDLENAILGGP 172

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255545092|ref|XP_002513607.1| conserved hypothetical protein [Ricinus communis] gi|223547515|gb|EEF49010.1| conserved hypothetical protein [Ricinus communis]

 Score =  178 bits (452), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 117/171 (68%), Positives = 137/171 (80%), Gaps = 3/171 (1%)

Query: 1   MLAISVSKFTNPDIILSSTPANTP-KFSLFSPACPPIFSKFPSCPHPIT-HSHKKTLTLA 58
           M AIS S  T     LSST ++TP +F+LF  + P  FSK   C H +  +  +KT T+ 
Sbjct: 1   MSAISTSLVTTTHS-LSSTQSSTPSRFNLFPISHPSHFSKSLLCSHNLCCYFPRKTPTVV 59

Query: 59  FSQSFEAEEELPSTEDEWLEKLPEKNKPLYSHSLPCIEAWLRSLGFHQSSDDRAVWLVEK 118
            S+S EAEEEL STEDEWL+KLP+K KPLYSHSLPCIEAWL+ LGFHQS DDRA+WL+EK
Sbjct: 60  SSKSSEAEEELSSTEDEWLKKLPDKKKPLYSHSLPCIEAWLKDLGFHQSKDDRAIWLIEK 119

Query: 119 HDWHAQLSLDMTDLYIRYLKNGPGNLEKDIERRFSYALSREDIENAILGGP 169
            +WHAQLSLD+TDLYIRYLK+GPG+LEKD+ERRFSYALSREDIENAILGGP
Sbjct: 120 LEWHAQLSLDITDLYIRYLKSGPGSLEKDVERRFSYALSREDIENAILGGP 170

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225462677|ref|XP_002265174.1| PREDICTED: uncharacterized protein LOC100241531 [Vitis vinifera] gi|302143708|emb|CBI22569.3| unnamed protein product [Vitis vinifera]

 Score =  176 bits (446), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 110/169 (65%), Positives = 124/169 (73%), Gaps = 14/169 (8%)

Query: 1   MLAISVSKFTNPDIILSSTPANTPKFSLFSPACPPIFSKFPSCPHPITHSHKKTLTLAFS 60
           M  ISVSKF + D  L S     PK S  +P     F KFP    P     +K+LTL FS
Sbjct: 1   MSTISVSKFISVDTTLFS-----PKSSTINPC---FFPKFPPNSKP-----RKSLTLVFS 47

Query: 61  QSFEAEEELPSTEDEWLEKLPEKNKPLYSHSLPCIEAWLRSLGFHQSSDDRAVWLVEKHD 120
            S    E   + EDEWL+KLPEK KPLYSHSLPC+EAWLR+LGF QS +DRA+W VEK +
Sbjct: 48  SS-SGAELSSAAEDEWLKKLPEKKKPLYSHSLPCVEAWLRNLGFFQSKEDRAIWFVEKPE 106

Query: 121 WHAQLSLDMTDLYIRYLKNGPGNLEKDIERRFSYALSREDIENAILGGP 169
           WHAQLSLD+TDLYIRYLK+GPGNLEKD+ERRFSYALSREDIENAILGGP
Sbjct: 107 WHAQLSLDVTDLYIRYLKSGPGNLEKDVERRFSYALSREDIENAILGGP 155

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326508374|dbj|BAJ99454.1| predicted protein [Hordeum vulgare subsp. vulgare] gi|326534310|dbj|BAJ89505.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  171 bits (433), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 78/95 (82%), Positives = 88/95 (92%)

Query: 75  EWLEKLPEKNKPLYSHSLPCIEAWLRSLGFHQSSDDRAVWLVEKHDWHAQLSLDMTDLYI 134
           EWLE+LPEK KPLY+HSLPCIEAWLRS+GF QS +DRAVW+ E   WHA+LSLD+TDL+I
Sbjct: 61  EWLERLPEKKKPLYAHSLPCIEAWLRSVGFAQSREDRAVWVAETPLWHARLSLDVTDLHI 120

Query: 135 RYLKNGPGNLEKDIERRFSYALSREDIENAILGGP 169
           RYLK+GPGNLEKD+ERRFSYALSREDIENAILGGP
Sbjct: 121 RYLKSGPGNLEKDMERRFSYALSREDIENAILGGP 155

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	169
TAIR|locus:2168352	170	AT5G52960 "AT5G52960" [Arabido	0.692	0.688	0.788	6e-48

TAIR|locus:2168352 AT5G52960 "AT5G52960" [Arabidopsis thaliana (taxid:3702)]

 Score = 501 (181.4 bits), Expect = 6.0e-48, P = 6.0e-48
 Identities = 93/118 (78%), Positives = 106/118 (89%)

Query:    52 KKTLTLAFSQSFEAEEELPSTEDEWLEKLPEKNKPLYSHSLPCIEAWLRSLGFHQSSDDR 111
             +K LTL  S+S +AEE +  TEDEWL+KLPEKNKPLYSHSLPCIEAWLR LGF+QS DDR
Sbjct:    54 RKPLTLVSSKSSDAEE-VSDTEDEWLKKLPEKNKPLYSHSLPCIEAWLRKLGFYQSKDDR 112

Query:   112 AVWLVEKHDWHAQLSLDMTDLYIRYLKNGPGNLEKDIERRFSYALSREDIENAILGGP 169
             AVWL++K DWHAQLSLD+TDL IRY+K+GPGNLE+D+ERRFSYALSRED ENAILGGP
Sbjct:   113 AVWLIQKPDWHAQLSLDVTDLCIRYMKSGPGNLERDMERRFSYALSREDTENAILGGP 170


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.133   0.414    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      169       169   0.00082  108 3  11 22  0.42    32
                                                     31  0.47    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  617 (66 KB)
  Total size of DFA:  174 KB (2100 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  20.00u 0.08s 20.08t   Elapsed:  00:00:07
  Total cpu time:  20.00u 0.08s 20.08t   Elapsed:  00:00:07
  Start:  Fri May 10 03:01:11 2013   End:  Fri May 10 03:01:18 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0009073 "aromatic amino acid family biosynthetic process" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0016226 "iron-sulfur cluster assembly" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	grail3.0025021301	hypothetical protein (173 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	estExt_Genewise1_v1.C_LG_XIII0363	hypothetical protein (158 aa)			•	•					0.527
	gw1.152.106.1	hypothetical protein (199 aa)			•	•					0.520
	gw1.XIII.355.1	hypothetical protein (158 aa)			•	•					0.511
	gw1.XIV.2732.1	hypothetical protein (109 aa)			•	•					0.511
	estExt_fgenesh4_pg.C_290310	hypothetical protein (227 aa)			•	•					0.507
	grail3.0003001601	hypothetical protein (149 aa)			•						0.506
	eugene3.14640002	annotation not avaliable (58 aa)			•						0.506
	eugene3.00181050	hypothetical protein (120 aa)			•						0.506
	eugene3.00090150	hypothetical protein (129 aa)			•						0.506
	estExt_fgenesh4_pg.C_LG_II2395	SubName- Full=Putative uncharacterized protein; (210 aa)			•						0.506

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	169
pfam11341	63	pfam11341, DUF3143, Protein of unknown function (D	1e-24

>gnl|CDD|151782 pfam11341, DUF3143, Protein of unknown function (DUF3143)

 Score = 90.0 bits (224), Expect = 1e-24
 Identities = 29/67 (43%), Positives = 40/67 (59%), Gaps = 4/67 (5%)

Query: 102 LGFHQSSDDRAVWLVEKHDWHAQLSLDMTDLYIRYLKNGPGNLEKDIERRFSYALSREDI 161
           LG  +  +D   W +E+ DW A+L LD  DL +RY + G     +D +R F Y+LSRED+
Sbjct: 1   LGAQRDDEDPCCWSLERPDWSAELRLDQEDLVVRYEQAGE----QDTQRSFPYSLSREDV 56

Query: 162 ENAILGG 168
           E AI  G
Sbjct: 57  EAAIFAG 63

This family of proteins has no known function. Length = 63

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	169
PF11341	63	DUF3143: Protein of unknown function (DUF3143); In	100.0

>PF11341 DUF3143: Protein of unknown function (DUF3143); InterPro: IPR021489 This family of proteins has no known function

Probab=100.00  E-value=3.3e-36  Score=212.36  Aligned_cols=63  Identities=54%  Similarity=1.030  Sum_probs=61.8

Q ss_pred             cCCccCCCCCeeeEEecCCceEEEEeeeeeeEEEEeecCCCCCcCceeeecccCCCHHHHHHHHhcC
Q 030903          102 LGFHQSSDDRAVWLVEKHDWHAQLSLDMTDLYIRYLKNGPGNLEKDIERRFSYALSREDIENAILGG  168 (169)
Q Consensus       102 LG~~qd~~d~~~W~lerP~WsAeL~Ld~edL~Vry~~~G~~gle~diqRsF~YsLSReDVEaAIf~G  168 (169)
                      |||+||.+|+|||+|++|+|+|+|+||+|||+|+|.++|+    +++||+|||||||+|||||||+|
T Consensus         1 lG~~qd~~d~~~W~~~~p~W~Ael~Ld~e~L~V~y~~~g~----~~~~rsF~YsLSR~DvE~Ai~~G   63 (63)
T PF11341_consen    1 LGCQQDDEDPCCWRLERPDWSAELSLDQEDLVVRYLQSGP----QDIQRSFPYSLSREDVEAAIFSG   63 (63)
T ss_pred             CCceeCCCCceEEEEeCCCCeEEEEEeeeEEEEEEccCCC----cccEEeccCcCCHHHHHHHHhcC
Confidence            7999999999999999999999999999999999999997    79999999999999999999998

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00