Citrus Sinensis ID: 030915

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------17
Protein Sequence
MGSRLGTRVVHFTNLPIKLLMPNTFQNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLKNPLSLSEDLFPIRVIQDEKERMRKEKESSIVEEGKKHWLDGKQVVKGNNNERSNKKKGGFGDVAVAGVKFPWSSMKQKQR
Secondary Structure (PSIPRED)
ccccccccEEEcccccEEEEcccccccccEEEEEEcccccHHHHHHHHHHHcccEEcEEEEEEccccccccccEEEEccccEEEEEEEccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccEEEEEcccEEEEEcccccccccEEEEEEcccccHHHHHHHHHHHHccEEEEEEEEEEcccEEEcccEEccccccEEEEEEEccccccccccccccccccHHHHcHHHHHcHHHHcccccccccccEEccccccccccccccccHHHHccccccccccccccc
Coil and Loop (DISEMBL)
mgsrlgtrvvhftnlpikllmpntFQNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTlnmegkkkkrgglliakpdykKAYVtlknplslsedlfpirVIQDEKERMRKEKESSIVEEGKkhwldgkqvvkgnnnersnkkkggfgdvavagvkfpwssmkqkqr
Flexible Loop (DISEMBL)
mgsrlgtrVVHFTNLPIKLLMPNTFQNITEIAlktipsaskIEIKRVLeslygfevdkvrtlnmegkkkkrgglliakpdyKKAYVTlknplslsedlfpiRVIQDEKERMRKEKEssiveegkkhwldgkqvvkgnnnersnkkkggfgdvavagvkfpwssmkqkqr
Low Complexity Region (SEG)
MGSRLGTRVVHFTNLPIKLLMPNTFQNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLKNPLSLSEDLFPIRVIQDekermrkekeSSIVEEGKKHWLDGKQVVKGNNNERSNKKKGGFGDVAVAGVKFPWSSMKQKQR
Disordered region (IsUnstruct)
*****GTRVVHFTNLPIKLLMPNTFQNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLKNPLSLSEDLFPIRVI*********************************************GDVAVAGVKF**********
Disordered Region (DISOPRED)
******T**VHFTNLPIKLLMPNTFQNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLKNPLSLSEDLF***************************************************************SM*****
Disordered Region (DISEMBL)
MGSRLGTRVVHFTNLPIKLLMPNTFQNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLKNPLSLSEDLFPIRVIQDEK*************EGKKHWLDGKQVVKGNNNERSNKKKGGFGDVAVAGVKFPW********
Disordered Region (DISPRO)
****LGTRVVHFTNLPIKLLMPNTFQNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLKNPLSLSEDLFPIRVIQDEKERM**********************************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGSRLGTRVVHFTNLPIKLLMPNTFQNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLKNPLSLSEDLFPIRVIQDEKERMRKEKESSIVEEGKKHWLDGKQVVKGNNNERSNKKKGGFGDVAVAGVKFPWSSMKQKQR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	169	2.2.26 [Sep-21-2011]
Q605B4	97	50S ribosomal protein L23	yes	no	0.355	0.618	0.433	1e-07
B5FWC0	153	39S ribosomal protein L23	N/A	no	0.710	0.784	0.303	2e-07
Q0I161	101	50S ribosomal protein L23	yes	no	0.378	0.633	0.437	2e-07
A0KF23	100	50S ribosomal protein L23	yes	no	0.349	0.59	0.474	3e-07
A4ST04	100	50S ribosomal protein L23	yes	no	0.349	0.59	0.474	3e-07
P55839	100	50S ribosomal protein L23	yes	no	0.431	0.73	0.397	3e-07
Q5QXX9	100	50S ribosomal protein L23	yes	no	0.396	0.67	0.417	4e-07
C5BGM3	100	50S ribosomal protein L23	yes	no	0.378	0.64	0.468	6e-07
Q0ABH3	99	50S ribosomal protein L23	yes	no	0.360	0.616	0.442	7e-07
Q9CL34	100	50S ribosomal protein L23	yes	no	0.431	0.73	0.383	1e-06

>sp|Q605B4|RL23_METCA 50S ribosomal protein L23 OS=Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath) GN=rplW PE=3 SV=1

 Score = 56.2 bits (134), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 41/60 (68%)

Query: 30 EIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLK 89
          +   +  P+ASK++IK  +E ++G +VD VR LN++GK K+ G  +  + D+KKAYV LK
Sbjct: 28 QFVFRVKPAASKLQIKSAVELMFGVKVDSVRILNVKGKSKRFGRFMGQRSDWKKAYVKLK 87

One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome.
Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath) (taxid: 243233)

>sp|B5FWC0|RM23_OTOGA 39S ribosomal protein L23, mitochondrial OS=Otolemur garnettii GN=MRPL23 PE=3 SV=1

 Score = 55.5 bits (132), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 66/132 (50%), Gaps = 12/132 (9%)

Query: 13  TNLPIKLLMPNTFQNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRG 72
           TN  I+L+ P T Q    +  +     ++++++  LE +Y   V  VRT    G  +KR 
Sbjct: 22  TNFFIQLVRPGTAQPEDTVQFRIPMEMTRVDLRNYLERIYNVPVAAVRTRVQHGSHRKRD 81

Query: 73  --GLLIAKPDYKKAYVTLKNPLSLS-EDLFPIRVIQDEKERMRKEKESSIVEEGKKHWLD 129
              + I KPDYK AYV L +  + +  DLFP      EK+      E S V+E +  ++ 
Sbjct: 82  HRNVRIKKPDYKVAYVQLAHGQTFTFPDLFP------EKD---PRLEGSSVDEAQSTFMA 132

Query: 130 GKQVVKGNNNER 141
            +Q  +G++ +R
Sbjct: 133 DEQQRQGSDPQR 144

Otolemur garnettii (taxid: 30611)

>sp|Q0I161|RL23_HAES1 50S ribosomal protein L23 OS=Haemophilus somnus (strain 129Pt) GN=rplW PE=3 SV=1

 Score = 55.1 bits (131), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/64 (43%), Positives = 41/64 (64%)

Query: 31 IALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLKN 90
          I  K    A+K+EI   +E L+  +VD VRT+ ++GK K+RG  +  + D+KKAYVTL+ 
Sbjct: 30 IVFKVALDANKVEIANAVEQLFEVKVDSVRTVVVKGKTKRRGAKMGQRSDWKKAYVTLQE 89

Query: 91 PLSL 94
            SL
Sbjct: 90 GQSL 93

One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome.

Haemophilus somnus (strain 129Pt) (taxid: 205914)

>sp|A0KF23|RL23_AERHH 50S ribosomal protein L23 OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=rplW PE=3 SV=1

 Score = 54.7 bits (130), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 28/59 (47%), Positives = 38/59 (64%)

Query: 31 IALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLK 89
          I  K    A+K E+K  +  L+  EV+ VRTLNM+GK K+ G  +  + D+KKAYVTLK
Sbjct: 30 IVFKVAVDATKAEVKAAVAKLFEVEVETVRTLNMKGKTKRAGARVGRRSDWKKAYVTLK 88

One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome.

Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) (taxid: 380703)

>sp|A4ST04|RL23_AERS4 50S ribosomal protein L23 OS=Aeromonas salmonicida (strain A449) GN=rplW PE=3 SV=1

 Score = 54.7 bits (130), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 28/59 (47%), Positives = 38/59 (64%)

Query: 31 IALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLK 89
          I  K    A+K E+K  +  L+  EV+ VRTLNM+GK K+ G  +  + D+KKAYVTLK
Sbjct: 30 IVFKIAVDATKAEVKAAVAKLFEVEVETVRTLNMKGKTKRSGARVGRRSDWKKAYVTLK 88

One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome.

Aeromonas salmonicida (strain A449) (taxid: 382245)

>sp|P55839|RL23_AGGAC 50S ribosomal protein L23 OS=Aggregatibacter actinomycetemcomitans GN=rplW PE=3 SV=1

 Score = 54.3 bits (129), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 29/73 (39%), Positives = 43/73 (58%)

Query: 22 PNTFQNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDY 81
           N  +    I  K    A+K+EI   +E L+  +VD VRT+ ++GK K+RG  +  + D+
Sbjct: 20 TNNAEKSNTIVFKVALDANKVEITNAVEQLFEVKVDSVRTVVVKGKTKRRGAKIGRRSDW 79

Query: 82 KKAYVTLKNPLSL 94
          KKAYVTL+   SL
Sbjct: 80 KKAYVTLQEGQSL 92

One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome.

Aggregatibacter actinomycetemcomitans (taxid: 714)

>sp|Q5QXX9|RL23_IDILO 50S ribosomal protein L23 OS=Idiomarina loihiensis (strain ATCC BAA-735 / DSM 15497 / L2-TR) GN=rplW PE=3 SV=1

 Score = 54.3 bits (129), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 28/67 (41%), Positives = 39/67 (58%)

Query: 22 PNTFQNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDY 81
           NT +N   +  K    A+K EIK  +E L+  EV  VRT+N++GK K+ G     + D+
Sbjct: 21 TNTAENNNTVVFKVAVDATKTEIKAAVEKLFEVEVKNVRTVNVKGKTKRTGSRFGKRSDW 80

Query: 82 KKAYVTL 88
          KKAYV L
Sbjct: 81 KKAYVAL 87

One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome.

Idiomarina loihiensis (strain ATCC BAA-735 / DSM 15497 / L2-TR) (taxid: 283942)

>sp|C5BGM3|RL23_EDWI9 50S ribosomal protein L23 OS=Edwardsiella ictaluri (strain 93-146) GN=rplW PE=3 SV=1

 Score = 53.5 bits (127), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 30/64 (46%), Positives = 41/64 (64%)

Query: 31 IALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLKN 90
          I LK    A+K EIK  ++ L+  EVD VRTL ++GK K+ G  +  + D+KKAYVTLK 
Sbjct: 30 IVLKVATDATKAEIKAAVKKLFEVEVDTVRTLVVKGKVKRHGQRIGRRSDWKKAYVTLKE 89

Query: 91 PLSL 94
            +L
Sbjct: 90 GQNL 93

One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome.

Edwardsiella ictaluri (strain 93-146) (taxid: 634503)

>sp|Q0ABH3|RL23_ALHEH 50S ribosomal protein L23 OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=rplW PE=3 SV=1

 Score = 53.5 bits (127), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 40/61 (65%)

Query: 30 EIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLK 89
          E+  K    A K EI++ +E L+  +V  VRT+ M+GK+K+ G L   +PD+KKAYVTL+
Sbjct: 28 EVVFKVAVDARKAEIRQAVEQLFDVKVRDVRTVKMKGKRKRFGRLEGKRPDWKKAYVTLE 87

Query: 90 N 90
           
Sbjct: 88 E 88

One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome.

Alkalilimnicola ehrlichei (strain MLHE-1) (taxid: 187272)

>sp|Q9CL34|RL23_PASMU 50S ribosomal protein L23 OS=Pasteurella multocida (strain Pm70) GN=rplW PE=3 SV=1

 Score = 52.8 bits (125), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 42/73 (57%)

Query: 22 PNTFQNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDY 81
           N  +    I  K    A+K+EI   +E L+  +VD VRT+ ++GK K+ G  +  + D+
Sbjct: 21 TNNAEKSNTIVFKVALDANKVEIANAVEQLFEVKVDSVRTVVVKGKTKRHGARMGRRSDW 80

Query: 82 KKAYVTLKNPLSL 94
          KKAYVTL+   SL
Sbjct: 81 KKAYVTLQEGQSL 93

One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome.

Pasteurella multocida (strain Pm70) (taxid: 272843)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	169
255580880	174	RNA binding protein, putative [Ricinus c	0.976	0.948	0.707	1e-59
449438835	174	PREDICTED: 50S ribosomal protein L23-lik	0.940	0.913	0.664	2e-57
359497264	170	PREDICTED: uncharacterized protein LOC10	0.976	0.970	0.700	1e-56
147784232	480	hypothetical protein VITISV_012657 [Viti	0.976	0.343	0.708	4e-56
77999307	188	ribosomal protein L23 family protein [So	0.976	0.877	0.644	2e-53
224083685	177	predicted protein [Populus trichocarpa]	0.982	0.937	0.654	7e-53
356567706	176	PREDICTED: uncharacterized protein LOC10	0.958	0.920	0.639	1e-51
297798014	174	hypothetical protein ARALYDRAFT_490774 [	0.958	0.931	0.619	3e-47
21554117	178	unknown [Arabidopsis thaliana]	0.964	0.915	0.619	5e-47
217075578	208	unknown [Medicago truncatula]	0.875	0.711	0.651	6e-47

>gi|255580880|ref|XP_002531259.1| RNA binding protein, putative [Ricinus communis] gi|223529144|gb|EEF31123.1| RNA binding protein, putative [Ricinus communis]

 Score =  234 bits (596), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 121/171 (70%), Positives = 138/171 (80%), Gaps = 6/171 (3%)

Query: 1   MGSRLGTRVVHFTNLPIKLLMPNTFQNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60
           M SR+G RVVHF NLPIKLLMP TF NI E ALKTIPSASKIEIKRVLESLYGFEVDKVR
Sbjct: 1   MASRVGGRVVHFANLPIKLLMPKTFNNIEEFALKTIPSASKIEIKRVLESLYGFEVDKVR 60

Query: 61  TLNMEGKKKKRGGLLIAKPDYKKAYVTLKNPLSLSEDLFPIRVIQDEKERMRKEKESSIV 120
           TLNMEGKKKKRGG L AKPDYKKAY+TLKNPLS+S DL+P+R+I ++KERM KE++SSIV
Sbjct: 61  TLNMEGKKKKRGGFLAAKPDYKKAYITLKNPLSISPDLYPVRIIAEDKERMNKERKSSIV 120

Query: 121 E--EGKKHWLDGKQVVKGN--NNERSNKKKGGFGDV--AVAGVKFPWSSMK 165
           +  EGKKHWLD K+ +K     NE+ N + G    V  A A  KFPW+SM+
Sbjct: 121 DDGEGKKHWLDDKKKMKNERFGNEKRNSRGGRDFHVENANANSKFPWTSMR 171

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449438835|ref|XP_004137193.1| PREDICTED: 50S ribosomal protein L23-like [Cucumis sativus] gi|449483270|ref|XP_004156540.1| PREDICTED: 50S ribosomal protein L23-like isoform 1 [Cucumis sativus] gi|449483272|ref|XP_004156541.1| PREDICTED: 50S ribosomal protein L23-like isoform 2 [Cucumis sativus]

 Score =  226 bits (576), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 119/179 (66%), Positives = 134/179 (74%), Gaps = 20/179 (11%)

Query: 1   MGSRLGTRVVHFTNLPIKLLMPNTFQNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60
           MGSRLG RVVHF NLPIKLLMP +F NITEIALKTIPSASKIEIKRVLESLYGFEVDKV+
Sbjct: 1   MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVQ 60

Query: 61  TLNMEGKKKKRGGLLIAKPDYKKAYVTLKNPLSLSEDLFPIRVIQDEKERMRKEKESSIV 120
           TLNMEGKKKKRGG+LIAKPDYKKAYVTL+NPLS+S D++PIR+I+++K  M K+ +SSIV
Sbjct: 61  TLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISPDMYPIRIIEEDKRNMNKQSKSSIV 120

Query: 121 EEG--KKHWLDGKQVVKGNNNERSNKKKGGFGDVAV-----------AGVKFPWSSMKQ 166
           EEG  KKHWL  K+ V         K   GF D                 KFPWSSM+ 
Sbjct: 121 EEGEAKKHWLHEKEPV-------GIKTYKGFADRGRRRSGGGAETVEPSTKFPWSSMRS 172

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359497264|ref|XP_002270942.2| PREDICTED: uncharacterized protein LOC100245960 [Vitis vinifera] gi|296084744|emb|CBI25888.3| unnamed protein product [Vitis vinifera]

 Score =  224 bits (571), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 117/167 (70%), Positives = 137/167 (82%), Gaps = 2/167 (1%)

Query: 1   MGSRLGTRVVHFTNLPIKLLMPNTFQNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60
           MGSRLG RV++FTNLPIKLLMP++F NI EIALKT+PSASKIEIKRVLESLYGFEV+KVR
Sbjct: 1   MGSRLGRRVINFTNLPIKLLMPSSFTNIKEIALKTVPSASKIEIKRVLESLYGFEVEKVR 60

Query: 61  TLNMEGKKKKRGGLLIAKPDYKKAYVTLKNPLSLSEDLFPIRVIQDEKERMRKEKESSIV 120
           TLNMEGKKKKRGGLLIAKPDYKKAY+TLKNPLS+S DL+PIR+I++EK+   K+ +SSIV
Sbjct: 61  TLNMEGKKKKRGGLLIAKPDYKKAYITLKNPLSISPDLYPIRLIEEEKKNTNKQSKSSIV 120

Query: 121 EEG--KKHWLDGKQVVKGNNNERSNKKKGGFGDVAVAGVKFPWSSMK 165
           EEG  K HWLDGK   +    + S ++  G    A A  KFPWS M+
Sbjct: 121 EEGEAKSHWLDGKDGDRFRPEKSSAERGRGGRGGAAAAAKFPWSGMR 167

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147784232|emb|CAN63891.1| hypothetical protein VITISV_012657 [Vitis vinifera]

 Score =  222 bits (566), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 119/168 (70%), Positives = 139/168 (82%), Gaps = 3/168 (1%)

Query: 1   MGSRLGTRVVHFTNLPIKLLMPNTFQNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60
           MGSRLG RV++FTNLPIKLLMP++F NI EIALKT+PSASKIEIKRVLESLYGFEV+KVR
Sbjct: 310 MGSRLGRRVINFTNLPIKLLMPSSFTNIKEIALKTVPSASKIEIKRVLESLYGFEVEKVR 369

Query: 61  TLNMEGKKKKRGGLLIAKPDYKKAYVTLKNPLSLSEDLFPIRVIQDEKERMRKEKESSIV 120
           TLNMEGKKKKRGGLLIAKPDYKKAY+TLKNPLS+S DL+PIR+I++EK+   K+ +SSIV
Sbjct: 370 TLNMEGKKKKRGGLLIAKPDYKKAYITLKNPLSISPDLYPIRLIEEEKKNTNKQSKSSIV 429

Query: 121 EEG--KKHWLDGKQVVKGNNNERSNK-KKGGFGDVAVAGVKFPWSSMK 165
           EEG  K HWLDGK   +    + S +  +GG G  A A  KFPWS M+
Sbjct: 430 EEGEAKSHWLDGKDGDRFRPEKSSAERGRGGRGGAAAAAAKFPWSGMR 477

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|77999307|gb|ABB17000.1| ribosomal protein L23 family protein [Solanum tuberosum]

 Score =  213 bits (542), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 118/183 (64%), Positives = 137/183 (74%), Gaps = 18/183 (9%)

Query: 1   MGSRLGTRVVHFTNLPIKLLMPNTFQNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60
           MGSRLG RVV+F NLPIKLLMP++F NITEI+LKTIPSASKIEIKRVLESLYGFEV+KV+
Sbjct: 1   MGSRLGRRVVNFANLPIKLLMPSSFSNITEISLKTIPSASKIEIKRVLESLYGFEVEKVQ 60

Query: 61  TLNMEGKKKKRGGLLIAKPDYKKAYVTLKNPLSLSEDLFPIRVIQDEKERMRKEKESSIV 120
           TLNM+GKKKKRGGLLIAKPDYKKAYVTL+NPLS+S DLFPI VIQ+EK+ M K+ +SSIV
Sbjct: 61  TLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDLFPIGVIQEEKKNMSKKSKSSIV 120

Query: 121 EEG---KKHWLD---------------GKQVVKGNNNERSNKKKGGFGDVAVAGVKFPWS 162
           E+    K HWLD               G+    G  ++    + G   DV  A  KFPWS
Sbjct: 121 EDDEPKKMHWLDEKKDGRNRSEMRFGRGRDHRSGQRSDVGRDRGGEHRDVGAAAAKFPWS 180

Query: 163 SMK 165
           SM+
Sbjct: 181 SMR 183

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224083685|ref|XP_002307085.1| predicted protein [Populus trichocarpa] gi|222856534|gb|EEE94081.1| predicted protein [Populus trichocarpa]

 Score =  211 bits (538), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 112/171 (65%), Positives = 129/171 (75%), Gaps = 5/171 (2%)

Query: 1   MGSRLGTRVVHFTNLPIKLLMPNTFQNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60
           M  RLG RV++F NLPIKLLMP T+ NI+EIALKTIPSASKIEIKRVLESLYGF+V+KV 
Sbjct: 1   MAGRLGRRVINFANLPIKLLMPTTYTNISEIALKTIPSASKIEIKRVLESLYGFDVEKVS 60

Query: 61  TLNMEGKKKKRGGLLIAKPDYKKAYVTLKNPLSLSEDLFPIRVIQDEKERM-RKEKESSI 119
           TLNMEGKKKKRGG LIAKPDYKKAYVTLK PLS+S  LFPIRVI++E+ +M +K  ESS 
Sbjct: 61  TLNMEGKKKKRGGFLIAKPDYKKAYVTLKTPLSISPHLFPIRVIEEERAKMSKKAPESSF 120

Query: 120 VEEGKKHWLDGKQ----VVKGNNNERSNKKKGGFGDVAVAGVKFPWSSMKQ 166
           VE+ K HWL  K+         +  R  +   G GDVA    KFPWSSM+ 
Sbjct: 121 VEDNKSHWLHEKKKESGRGGSGSGWRGGRGGRGRGDVAAEKAKFPWSSMRS 171

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356567706|ref|XP_003552058.1| PREDICTED: uncharacterized protein LOC100800404 [Glycine max]

 Score =  207 bits (526), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 110/172 (63%), Positives = 130/172 (75%), Gaps = 10/172 (5%)

Query: 1   MGSRLGTRVVHFTNLPIKLLMPNTFQNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60
           MGSRLG RVV F NLPIKLLMPN+F NI EIALKTIPSA+KIEIKRVL+SLYGF+VDKVR
Sbjct: 1   MGSRLGRRVVQFANLPIKLLMPNSFTNIHEIALKTIPSATKIEIKRVLQSLYGFDVDKVR 60

Query: 61  TLNMEGKKKKRGGLLIAKPDYKKAYVTLKNPLSLSEDLFPIRVIQDEKERMRKEKESSIV 120
           TLNMEGKKKKRGGLLIAKPDYKKAYVTLK PLS+S DL+PIR+I ++K+R+ K+ +SS+V
Sbjct: 61  TLNMEGKKKKRGGLLIAKPDYKKAYVTLKTPLSISPDLYPIRIIDEDKKRINKQAKSSLV 120

Query: 121 EE------GKKHWLDGKQVVKGNNNERSNKKKGGFGDV-AVAGVKFPWSSMK 165
           ++         HWL  +   K        +K G  G     +  KFPWSSM+
Sbjct: 121 QDHEAHTEAHHHWLHDR---KEAQPPFRPQKHGRLGRPEGASNAKFPWSSMR 169

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297798014|ref|XP_002866891.1| hypothetical protein ARALYDRAFT_490774 [Arabidopsis lyrata subsp. lyrata] gi|297312727|gb|EFH43150.1| hypothetical protein ARALYDRAFT_490774 [Arabidopsis lyrata subsp. lyrata]

 Score =  192 bits (489), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 109/176 (61%), Positives = 121/176 (68%), Gaps = 14/176 (7%)

Query: 1   MGSRLGTRVVHFTNLPIKLLMPNTFQNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60
           MGSRLG RVVHF NLPIKLLMP    NI E ALKTIPSASKIEIKRVLESLYGF+V+KV 
Sbjct: 1   MGSRLGGRVVHFANLPIKLLMPAKLTNIHEFALKTIPSASKIEIKRVLESLYGFDVEKVN 60

Query: 61  TLNMEGKKKKRGGLLIAKPDYKKAYVTLKNPLSLSEDLFPIRVIQDEKERMRKEKESSIV 120
           TLNM+GKKKKRGGLLIAK DYKKAYVTL+ PLS+S DLFP++ I  E++R  K K SS V
Sbjct: 61  TLNMDGKKKKRGGLLIAKADYKKAYVTLRTPLSISRDLFPVKFI--EEDRKSKVKGSSFV 118

Query: 121 EE---GKKHWLDGKQ---------VVKGNNNERSNKKKGGFGDVAVAGVKFPWSSM 164
           EE    K HWLD K+                ER+N         A    KFPWS+M
Sbjct: 119 EEEDDKKSHWLDRKEKREIGGYGKGKGRRGGERANSPTRAGAAAAAGMAKFPWSNM 174

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21554117|gb|AAM63197.1| unknown [Arabidopsis thaliana]

 Score =  192 bits (488), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 109/176 (61%), Positives = 126/176 (71%), Gaps = 13/176 (7%)

Query: 1   MGSRLGTRVVHFTNLPIKLLMPNTFQNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60
           MGSRLG RVVHF NLPIKLLMP    NI E ALKTIPSASKIEIKRVLESLYGF+V+KV 
Sbjct: 1   MGSRLGGRVVHFANLPIKLLMPAKLTNIHEFALKTIPSASKIEIKRVLESLYGFDVEKVN 60

Query: 61  TLNMEGKKKKRGGLLIAKPDYKKAYVTLKNPLSLSEDLFPIRVIQDEKERMRKEKESSIV 120
           TLNM+GKKKKRGGLLIAK DYKKAYVTL++PLS+S DLFP++ I  E++R  K K SS V
Sbjct: 61  TLNMDGKKKKRGGLLIAKADYKKAYVTLRSPLSISRDLFPVKYI--EEDRKSKVKGSSFV 118

Query: 121 EE---GKKHWLDGKQVVKGNNNERSNKKKGG--------FGDVAVAGVKFPWSSMK 165
           EE    K HWLD K+  +     +   ++GG         G  A    KFPWS+M+
Sbjct: 119 EEEDDKKSHWLDRKEKREIGGYGKGKARRGGERANSPTRGGAAAAGTAKFPWSNMR 174

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217075578|gb|ACJ86149.1| unknown [Medicago truncatula]

 Score =  191 bits (486), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 99/152 (65%), Positives = 124/152 (81%), Gaps = 4/152 (2%)

Query: 1   MGSRLGTRVVHFTNLPIKLLMPNTFQNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60
           MGSRLG RVV+F NLPIKLL+P  F +I EIALKTIPSASKIEIKRVLESLYGF+V+KVR
Sbjct: 1   MGSRLGRRVVYFANLPIKLLLPTNFTDIHEIALKTIPSASKIEIKRVLESLYGFDVEKVR 60

Query: 61  TLNMEGKKKKRGGLLIAKPDYKKAYVTLKNPLSLSEDLFPIRVIQDEKERMRKEK-ESSI 119
           TLNM+GKKKKRGG++IAKPDYKKA+VTLK PL ++ +LFPIR I+++K+ + K+   +SI
Sbjct: 61  TLNMDGKKKKRGGIVIAKPDYKKAFVTLKTPLLINPNLFPIREIEEDKKSLNKQAMAASI 120

Query: 120 VEE--GKKHWLDGKQVVKGNNNERSNKKKGGF 149
           VEE  GK HWLD  +  +G   + +  ++GGF
Sbjct: 121 VEEAPGKSHWLDENKNTRGFKPQ-NGYRRGGF 151

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	169
TAIR|locus:2140030	178	AT4G39880 [Arabidopsis thalian	0.958	0.910	0.615	1.8e-46
DICTYBASE|DDB_G0275673	120	DDB_G0275673 "50S ribosomal pr	0.497	0.7	0.397	6.6e-10
UNIPROTKB|P0ADZ0	100	rplW "50S ribosomal subunit pr	0.378	0.64	0.437	4.2e-08
UNIPROTKB|F1PBY1	153	MRPL23 "Uncharacterized protei	0.520	0.575	0.329	1.1e-07
MGI|MGI:1196612	146	Mrpl23 "mitochondrial ribosoma	0.520	0.602	0.329	1.4e-07
RGD|68343	146	Mrpl23 "mitochondrial ribosoma	0.520	0.602	0.329	1.4e-07
TIGR_CMR|CPS_0871	100	CPS_0871 "ribosomal protein L2	0.414	0.7	0.402	1.8e-07
UNIPROTKB|Q16540	153	MRPL23 "39S ribosomal protein	0.520	0.575	0.329	2.3e-07
TIGR_CMR|GSU_2855	94	GSU_2855 "ribosomal protein L2	0.360	0.648	0.460	2.3e-07
UNIPROTKB|Q3A9R8	95	rplW "50S ribosomal protein L2	0.307	0.547	0.442	3.8e-07

TAIR|locus:2140030 AT4G39880 [Arabidopsis thaliana (taxid:3702)]

 Score = 487 (176.5 bits), Expect = 1.8e-46, P = 1.8e-46
 Identities = 109/177 (61%), Positives = 123/177 (69%)

Query:     1 MGSRLGTRVVHFTNLPIKLLMPNTFQNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60
             MGSRLG RVVHF NLPIKLLMP    NI E ALKTIPSASKIEIKRVLESLYGF+V+KV 
Sbjct:     1 MGSRLGGRVVHFANLPIKLLMPAKLTNIHEFALKTIPSASKIEIKRVLESLYGFDVEKVN 60

Query:    61 TLNMEGKKKKRGGLLIAKPDYKKAYVTLKNPLSLSEDLFPIRVIQDXXXXXXXXXXSSIV 120
             TLNM+GKKKKRGGLLIAK DYKKAYVTL++PLS+S DLFP++ I++          SS V
Sbjct:    61 TLNMDGKKKKRGGLLIAKADYKKAYVTLRSPLSISRDLFPVKYIEEDRKSKVKG--SSFV 118

Query:   121 EEG---KKHWLDGKQ------VVKGNNN---ERSNKKKGGFGDVAVAGVKFPWSSMK 165
             EE    K HWLD K+        KG      ER+N    G G  A    KFPWS+M+
Sbjct:   119 EEEDDKKSHWLDRKEKREIGGYGKGKGRRGGERANSPTRG-GAAAAGTAKFPWSNMR 174

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0042254 "ribosome biogenesis" evidence=ISS

GO:0006354 "DNA-dependent transcription, elongation" evidence=RCA

GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=RCA

DICTYBASE|DDB_G0275673 DDB_G0275673 "50S ribosomal protein L23" [Dictyostelium discoideum (taxid:44689)]

 Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
 Identities = 39/98 (39%), Positives = 59/98 (60%)

Query:     5 LGTRV---VHFTNLPIKLLMPN--TFQNITEIALKTIPSASKIEIKRVLESLYGFEVDKV 59
             LGTR+   V F N+ ++++  +  TF+N  +I  KT  S  K +IK  +++LY   VDKV
Sbjct:    10 LGTRLMNSVFFPNIKLQVIRNSGKTFENTNKIMFKTDCSVGKTDIKTYMKALYDVNVDKV 69

Query:    60 RTLNMEGK-KKKRGGL-----LIAK---PDYKKAYVTL 88
              T+N++G+ K K  GL     L +K   PDYKKA +T+
Sbjct:    70 NTINVQGRIKSKTKGLQKRSKLNSKYKTPDYKKAIITV 107

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|P0ADZ0 rplW "50S ribosomal subunit protein L23" [Escherichia coli K-12 (taxid:83333)]

 Score = 125 (49.1 bits), Expect = 4.2e-08, P = 4.2e-08
 Identities = 28/64 (43%), Positives = 40/64 (62%)

Query:    31 IALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLKN 90
             I LK    A+K EIK  ++ L+  EV+ V TL ++GK K+ G  +  + D+KKAYVTLK 
Sbjct:    30 IVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLVVKGKVKRHGQRIGRRSDWKKAYVTLKE 89

Query:    91 PLSL 94
               +L
Sbjct:    90 GQNL 93

GO:0006412 "translation" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0019843 "rRNA binding" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

UNIPROTKB|F1PBY1 MRPL23 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 121 (47.7 bits), Expect = 1.1e-07, P = 1.1e-07
 Identities = 30/91 (32%), Positives = 47/91 (51%)

Query:    13 TNLPIKLLMPNTFQNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRG 72
             TN  I+L+ P T Q    +  +     ++++++  LE +Y   V  VRT    G  +KR 
Sbjct:    22 TNFFIQLVRPGTAQPEDTVQFRIPMEMTRVDLRNYLERIYNVPVAAVRTRVQHGSNRKRD 81

Query:    73 --GLLIAKPDYKKAYVTLKNPLSLS-EDLFP 100
                + + KPDYK AYV L +  + +  DLFP
Sbjct:    82 YRNVRVKKPDYKVAYVQLAHGQTFTFPDLFP 112

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

MGI|MGI:1196612 Mrpl23 "mitochondrial ribosomal protein L23" [Mus musculus (taxid:10090)]

 Score = 120 (47.3 bits), Expect = 1.4e-07, P = 1.4e-07
 Identities = 30/91 (32%), Positives = 47/91 (51%)

Query:    13 TNLPIKLLMPNTFQNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRG 72
             TN  I+L+ P T Q    +  +     ++++++  LE +Y   V  VRT    G  ++R 
Sbjct:    22 TNFFIQLVRPGTAQPEDTVQFRIPMEMTRVDLRNYLEQIYNVPVAAVRTRVQHGSNRRRD 81

Query:    73 --GLLIAKPDYKKAYVTLKNPLSLS-EDLFP 100
                + I KPDYK AYV L +  + +  DLFP
Sbjct:    82 HKNVRIKKPDYKVAYVQLAHGQTFTFPDLFP 112

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=ISO

GO:0005622 "intracellular" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005762 "mitochondrial large ribosomal subunit" evidence=ISO

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=ISO

GO:0030529 "ribonucleoprotein complex" evidence=IEA

RGD|68343 Mrpl23 "mitochondrial ribosomal protein L23" [Rattus norvegicus (taxid:10116)]

 Score = 120 (47.3 bits), Expect = 1.4e-07, P = 1.4e-07
 Identities = 30/91 (32%), Positives = 47/91 (51%)

Query:    13 TNLPIKLLMPNTFQNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRG 72
             TN  I+L+ P T Q    +  +     ++++++  LE +Y   V  VRT    G  ++R 
Sbjct:    22 TNFFIQLVRPGTAQPEDTVQFRIPMEMTRVDLRNYLEQIYNVPVAAVRTRVQHGSNRRRD 81

Query:    73 --GLLIAKPDYKKAYVTLKNPLSLS-EDLFP 100
                + I KPDYK AYV L +  + +  DLFP
Sbjct:    82 HKNVRIKKPDYKVAYVQLAHGQTFTFPDLFP 112

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

TIGR_CMR|CPS_0871 CPS_0871 "ribosomal protein L23" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 119 (46.9 bits), Expect = 1.8e-07, P = 1.8e-07
 Identities = 31/77 (40%), Positives = 41/77 (53%)

Query:    19 LLMPNTFQNITEIA-------LKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKR 71
             LL PN  +  T  A        K    A+K EIK  +E L+   V+ V TLN++GK K+ 
Sbjct:    11 LLAPNISEKATTAAEANNTVVFKVATDATKAEIKAAVEKLFEVTVEGVNTLNVKGKVKRT 70

Query:    72 GGLLIAKPDYKKAYVTL 88
             G     + D+KKAYVTL
Sbjct:    71 GARFGRRNDWKKAYVTL 87

GO:0042254 "ribosome biogenesis" evidence=ISS

UNIPROTKB|Q16540 MRPL23 "39S ribosomal protein L23, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 118 (46.6 bits), Expect = 2.3e-07, P = 2.3e-07
 Identities = 30/91 (32%), Positives = 46/91 (50%)

Query:    13 TNLPIKLLMPNTFQNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRG 72
             TN  I+L+ P   Q    +  +     ++++++  LE +Y   V  VRT    G  K+R 
Sbjct:    22 TNFFIQLVRPGVAQPEDTVQFRIPMEMTRVDLRNYLEGIYNVPVAAVRTRVQHGSNKRRD 81

Query:    73 --GLLIAKPDYKKAYVTLKNPLSLS-EDLFP 100
                + I KPDYK AYV L +  + +  DLFP
Sbjct:    82 HRNVRIKKPDYKVAYVQLAHGQTFTFPDLFP 112

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003723 "RNA binding" evidence=TAS

GO:0005762 "mitochondrial large ribosomal subunit" evidence=TAS

TIGR_CMR|GSU_2855 GSU_2855 "ribosomal protein L23" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 118 (46.6 bits), Expect = 2.3e-07, P = 2.3e-07
 Identities = 29/63 (46%), Positives = 40/63 (63%)

Query:    39 ASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLKNPLSLSEDL 98
             A+KIEIK  +E L+  EV +V T+N+ GK K+ G     + ++KKAYVTLK   S+  D 
Sbjct:    34 ANKIEIKEAVEKLFKVEVAEVNTVNVAGKVKRFGRHYGKRSNWKKAYVTLKEGSSV--DF 91

Query:    99 FPI 101
             F I
Sbjct:    92 FEI 94

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0042254 "ribosome biogenesis" evidence=ISS

UNIPROTKB|Q3A9R8 rplW "50S ribosomal protein L23" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 116 (45.9 bits), Expect = 3.8e-07, P = 3.8e-07
 Identities = 23/52 (44%), Positives = 36/52 (69%)

Query:    38 SASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLK 89
             +A+KIEIK  +E L+  +V+KV T+ ++GK K+ G  +   P+YKKA V L+
Sbjct:    33 NANKIEIKNAIEELFKVKVEKVNTIRVKGKMKRVGRFVGRTPEYKKAIVKLR 84

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00012024001 SubName- Full=Chromosome undetermined scaffold_2795, whole genome shotgun sequence; Flags- Fragment; (166 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	169
PRK05738	92	PRK05738, rplW, 50S ribosomal protein L23; Reviewe	6e-16
COG0089	94	COG0089, RplW, Ribosomal protein L23 [Translation,	1e-12
pfam00276	90	pfam00276, Ribosomal_L23, Ribosomal protein L23	3e-09
CHL00030	93	CHL00030, rpl23, ribosomal protein L23	9e-07
PRK14548	84	PRK14548, PRK14548, 50S ribosomal protein L23P; Pr	6e-06
TIGR03636	77	TIGR03636, L23_arch, archaeal ribosomal protein L2	6e-06
PRK12280	158	PRK12280, rplW, 50S ribosomal protein L23; Reviewe	1e-04

>gnl|CDD|235586 PRK05738, rplW, 50S ribosomal protein L23; Reviewed

 Score = 68.6 bits (169), Expect = 6e-16
 Identities = 25/59 (42%), Positives = 37/59 (62%)

Query: 31 IALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLK 89
             +  P A+K EIK  +E L+G +V+ V TLN++GK K+ G  +  + D+KKA VTL 
Sbjct: 23 YVFEVAPDATKPEIKAAVEKLFGVKVESVNTLNVKGKTKRFGRRIGKRSDWKKAIVTLA 81

Length = 92

>gnl|CDD|223167 COG0089, RplW, Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]

 Score = 60.3 bits (147), Expect = 1e-12
 Identities = 30/54 (55%), Positives = 37/54 (68%), Gaps = 1/54 (1%)

Query: 37 PSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAK-PDYKKAYVTLK 89
          P A+K EIK  +E L+G +V+KV TLN +GK K+ G   I    DYKKAYVTLK
Sbjct: 30 PDATKPEIKAAVEELFGVKVEKVNTLNTKGKTKRAGVKRIGLRKDYKKAYVTLK 83

Length = 94

>gnl|CDD|144021 pfam00276, Ribosomal_L23, Ribosomal protein L23

 Score = 51.2 bits (123), Expect = 3e-09
 Identities = 25/55 (45%), Positives = 34/55 (61%)

Query: 37 PSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLKNP 91
            A+K EIK  +E ++G +V+KV TL + GK K+ G  L  K  YKKA VTL+  
Sbjct: 28 KKANKTEIKDAVEHIFGVKVEKVNTLILPGKVKRNGQYLGRKKSYKKAIVTLEEG 82

Length = 90

>gnl|CDD|176971 CHL00030, rpl23, ribosomal protein L23

 Score = 44.5 bits (106), Expect = 9e-07
 Identities = 16/52 (30%), Positives = 30/52 (57%)

Query: 39 ASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLKN 90
          ++K EIK  +E  +G +V  V +  +  KK++ G ++  K  YK+  +TL+ 
Sbjct: 30 STKTEIKHWIELFFGVKVIAVNSHRLPRKKRRMGPIMGHKMHYKRMIITLQP 81

Length = 93

>gnl|CDD|237750 PRK14548, PRK14548, 50S ribosomal protein L23P; Provisional

 Score = 42.2 bits (100), Expect = 6e-06
 Identities = 24/81 (29%), Positives = 34/81 (41%), Gaps = 26/81 (32%)

Query: 28 ITEIALKTI-----------PSASKIEIKRVLESLYGFEVDKVRTL-NMEGKKKKRGGLL 75
          +TE A+  I             A+K +IKR +E L+  +V+KV TL   +G+        
Sbjct: 10 VTEKAMNLIEKENKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGE-------- 61

Query: 76 IAKPDYKKAYVTLKNPLSLSE 96
                KKAYV L       E
Sbjct: 62 ------KKAYVKLAEEYDAEE 76

Length = 84

>gnl|CDD|132675 TIGR03636, L23_arch, archaeal ribosomal protein L23

 Score = 41.8 bits (99), Expect = 6e-06
 Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 13/59 (22%)

Query: 38 SASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLKNPLSLSE 96
           A+K +IKR +E L+  +V+KV T             LI     KKAYV L    +  E
Sbjct: 24 KATKGDIKRAVEKLFDVKVEKVNT-------------LITPRGEKKAYVKLAEEYAAEE 69

This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 77

>gnl|CDD|237035 PRK12280, rplW, 50S ribosomal protein L23; Reviewed

 Score = 40.1 bits (94), Expect = 1e-04
 Identities = 32/89 (35%), Positives = 48/89 (53%), Gaps = 3/89 (3%)

Query: 37  PSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLKNPLSLSE 96
             A+KIEIK+ +E ++  +V KV   N++ K K+ G        YKKAYVTL    S++ 
Sbjct: 31  RRANKIEIKKAVEFIFKVKVLKVNIFNVDKKPKRLGRFPGFTNSYKKAYVTLAEGYSIN- 89

Query: 97  DLFPIRVIQDEKERMRKEKESSIVEEGKK 125
            LFP    + E++ + KE E     + KK
Sbjct: 90  -LFP-EESEKEQKEVSKETEEKEAIKAKK 116

Length = 158

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	169
CHL00030	93	rpl23 ribosomal protein L23	99.95
PRK05738	92	rplW 50S ribosomal protein L23; Reviewed	99.95
PRK12280	158	rplW 50S ribosomal protein L23; Reviewed	99.94
PF00276	91	Ribosomal_L23: Ribosomal protein L23; InterPro: IP	99.94
COG0089	94	RplW Ribosomal protein L23 [Translation, ribosomal	99.92
PRK14548	84	50S ribosomal protein L23P; Provisional	99.84
TIGR03636	77	L23_arch archaeal ribosomal protein L23. This mode	99.81
KOG4089	165	consensus Predicted mitochondrial ribosomal protei	99.81
PTZ00191	145	60S ribosomal protein L23a; Provisional	99.78
KOG1751	157	consensus 60s ribosomal protein L23 [Translation,	99.4
KOG4089	165	consensus Predicted mitochondrial ribosomal protei	92.5

>CHL00030 rpl23 ribosomal protein L23

Probab=99.95  E-value=3.6e-28  Score=180.28  Aligned_cols=87  Identities=22%  Similarity=0.327  Sum_probs=82.4

Q ss_pred             CcceeecCCCCcccC---CeEEEEeCCCCCHHHHHHHHHHHhCCceeEEEeeecCCcccccCCcccCCCCceEEEEEcCC
Q 030915           14 NLPIKLLMPNTFQNI---TEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLKN   90 (169)
Q Consensus        14 ni~ikpv~tEK~~~~---n~~~F~V~~~atK~eIK~alekiY~VkV~kVnT~~~~GK~kR~~~~~gk~~~~KKAyVtL~~   90 (169)
                      +++++|++|||++.+   |+|+|.|+++|||.|||+|||.+|||+|.+|||++.+|+.+|.+++.|++++||||||||++
T Consensus         2 ~iI~~PivTEKs~~l~e~n~y~F~V~~~anK~eIK~avE~lf~VkV~~VNt~~~~~k~kr~~~~~G~~~~~KKAiVtL~~   81 (93)
T CHL00030          2 DGIKYPVFTDKSIRLLEKNQYTFDVDSGSTKTEIKHWIELFFGVKVIAVNSHRLPRKKRRMGPIMGHKMHYKRMIITLQP   81 (93)
T ss_pred             ceeccceeCHHHHHhhHCCEEEEEECCCCCHHHHHHHHHHHhCCeEEEEEEEEcCCCccccCCcccccCCcEEEEEEcCC
Confidence            578999999999864   99999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccCCCCCccc
Q 030915           91 PLSLSEDLFPIR  102 (169)
Q Consensus        91 g~~i~PdlF~~k  102 (169)
                      |++|+  +|+..
T Consensus        82 g~~I~--~~~~~   91 (93)
T CHL00030         82 GYSIP--LFREK   91 (93)
T ss_pred             cCEec--ccccc
Confidence            99998  88653

>PRK05738 rplW 50S ribosomal protein L23; Reviewed

Probab=99.95  E-value=7.4e-28  Score=177.76  Aligned_cols=86  Identities=30%  Similarity=0.453  Sum_probs=81.9

Q ss_pred             CcceeecCCCCccc----CCeEEEEeCCCCCHHHHHHHHHHHhCCceeEEEeeecCCcccccCCcccCCCCceEEEEEcC
Q 030915           14 NLPIKLLMPNTFQN----ITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLK   89 (169)
Q Consensus        14 ni~ikpv~tEK~~~----~n~~~F~V~~~atK~eIK~alekiY~VkV~kVnT~~~~GK~kR~~~~~gk~~~~KKAyVtL~   89 (169)
                      +++++|++|||++.    .|+|+|.|+++|||+|||+|||++|||+|.+|||++++|+.+|.++..|++++||||||+|.
T Consensus         2 ~ii~~P~~TEKs~~~~e~~n~~~F~V~~~a~K~eIK~aie~lf~VkV~~VnT~~~~gk~kr~~~~~g~~~~~KKA~VtL~   81 (92)
T PRK05738          2 DVIKRPVITEKSTLLMEKQNKYVFEVAPDATKPEIKAAVEKLFGVKVESVNTLNVKGKTKRFGRRIGKRSDWKKAIVTLA   81 (92)
T ss_pred             ccccccccCHHHHHhHHhCCEEEEEECCCCCHHHHHHHHHHHcCCceeEEEEEEeCCceeeecccccccCCcEEEEEEcC
Confidence            58999999999985    59999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCccCCCCCcc
Q 030915           90 NPLSLSEDLFPI  101 (169)
Q Consensus        90 ~g~~i~PdlF~~  101 (169)
                      +|++|+  +|+.
T Consensus        82 ~g~~i~--~~~~   91 (92)
T PRK05738         82 EGQKID--FFGG   91 (92)
T ss_pred             CCCEEe--cccC
Confidence            999999  8864

>PRK12280 rplW 50S ribosomal protein L23; Reviewed

Probab=99.94  E-value=5e-27  Score=188.56  Aligned_cols=97  Identities=31%  Similarity=0.430  Sum_probs=89.0

Q ss_pred             ecCCcceeecCCCCcccC---CeEEEEeCCCCCHHHHHHHHHHHhCCceeEEEeeecCCcccccCCcccCCCCceEEEEE
Q 030915           11 HFTNLPIKLLMPNTFQNI---TEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVT   87 (169)
Q Consensus        11 flpni~ikpv~tEK~~~~---n~~~F~V~~~atK~eIK~alekiY~VkV~kVnT~~~~GK~kR~~~~~gk~~~~KKAyVt   87 (169)
                      .+.++|++|++||+++.+   |+|+|.|+++|||+|||+|||.||||+|.+|||+|++|+.+|.|++.|++++||||||+
T Consensus         2 d~~~iIk~PviTEKs~~l~e~N~ytF~V~~~anK~eIK~AVE~iF~VkV~~VNT~~~~~K~KR~g~~~G~~~~~KKAiVt   81 (158)
T PRK12280          2 NINEVIKKPILTEKSYSLMSKNVYTFKVDRRANKIEIKKAVEFIFKVKVLKVNIFNVDKKPKRLGRFPGFTNSYKKAYVT   81 (158)
T ss_pred             ChHhhhhccccCHHHHhhhhCCEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEecCCcccccCCcccccCCcEEEEEE
Confidence            466899999999999853   99999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCccCCCCCccccchHHHH
Q 030915           88 LKNPLSLSEDLFPIRVIQDEKE  109 (169)
Q Consensus        88 L~~g~~i~PdlF~~k~~~~~~~  109 (169)
                      |.+|++|+  ||+....+++.+
T Consensus        82 L~~g~~I~--~f~~~~~~~~~~  101 (158)
T PRK12280         82 LAEGYSIN--LFPEESEKEQKE  101 (158)
T ss_pred             CCCCCEee--ccCCcchhcchh
Confidence            99999999  998876444444

>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=99.94  E-value=2.5e-27  Score=174.19  Aligned_cols=86  Identities=36%  Similarity=0.537  Sum_probs=77.8

Q ss_pred             CCcceeecCCCCccc----CCeEEEEeCCCCCHHHHHHHHHHHhCCceeEEEeeecCCcccccCCcccCCCCceEEEEEc
Q 030915           13 TNLPIKLLMPNTFQN----ITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTL   88 (169)
Q Consensus        13 pni~ikpv~tEK~~~----~n~~~F~V~~~atK~eIK~alekiY~VkV~kVnT~~~~GK~kR~~~~~gk~~~~KKAyVtL   88 (169)
                      .+++++|++|||++.    +|+|+|.|+++|||+|||+|||++|||+|.+|||++++||.+|.|...|++++||||||+|
T Consensus         1 ~~ii~~p~iTeKs~~~~~~~n~~tF~V~~~atK~~Ik~aie~iy~V~V~~Vnt~~~~gk~kR~g~~~g~~~~~KKaiVtL   80 (91)
T PF00276_consen    1 YDIIKKPVITEKSMKLLENPNQYTFEVDPRATKTEIKEAIEKIYGVKVKKVNTMNYPGKKKRKGKFVGKTKDYKKAIVTL   80 (91)
T ss_dssp             TTTEEEE--SHHHHHHHHHSSEEEEEETTTSTHHHHHHHHHHHHTSEEEEEEEEEETSEEEESSSCEEEE-EEEEEEEEE
T ss_pred             CCEeecceecHhHHHhhhcCCEEEEEEeCCCCHHHHHHHHHhhcCCCeeEEEEeEeCCCceEeCCccccCCCcEEEEEEe
Confidence            478999999999764    5999999999999999999999999999999999999999999988889999999999999


Q ss_pred             CCCCccCCCCCc
Q 030915           89 KNPLSLSEDLFP  100 (169)
Q Consensus        89 ~~g~~i~PdlF~  100 (169)
                      .+|+.|+  +|+
T Consensus        81 ~~~~~i~--~~~   90 (91)
T PF00276_consen   81 KEGDKIP--LFE   90 (91)
T ss_dssp             STTSCHH--HHH
T ss_pred             CCCCccc--ccc
Confidence            9999988  664

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found in both eukaryotic L25 and prokaryotic and eukaryotic L23 proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3DF4_T 3DF2_T 4A1E_R 4A1A_R 4A1C_R 4A17_R 2HGU_W 2HGQ_W 1N88_A 2HGJ_W ....

>COG0089 RplW Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]

Probab=99.92  E-value=8.8e-26  Score=167.95  Aligned_cols=88  Identities=35%  Similarity=0.467  Sum_probs=82.2

Q ss_pred             cCCcceeecCCCCccc----CCeEEEEeCCCCCHHHHHHHHHHHhCCceeEEEeeecCCcccccCC-cccCCCCceEEEE
Q 030915           12 FTNLPIKLLMPNTFQN----ITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGG-LLIAKPDYKKAYV   86 (169)
Q Consensus        12 lpni~ikpv~tEK~~~----~n~~~F~V~~~atK~eIK~alekiY~VkV~kVnT~~~~GK~kR~~~-~~gk~~~~KKAyV   86 (169)
                      +.++|++|++|||++.    .|+|+|.|+++|||+|||.|||.||||+|.+|||+|.+|+.||.+. +.|++++||+|||
T Consensus         1 ~~dvI~~PvvTEKa~~l~~~~nk~vF~V~~~AtK~~IK~AvE~lF~VkV~kVNTl~~k~k~KR~~~k~~G~~~~~kka~V   80 (94)
T COG0089           1 LYDVIKSPVVTEKAMLLMEKENKYVFIVDPDATKPEIKAAVEELFGVKVEKVNTLNTKGKTKRAGVKRIGLRKDYKKAYV   80 (94)
T ss_pred             CcchhhcceecHHHHHhHhhCCEEEEEECCCCCHHHHHHHHHHHhCCeEEEEEEEEeCCcceEEeccccccCcccceeEE
Confidence            3578999999999985    3999999999999999999999999999999999999999999987 8999999999999


Q ss_pred             EcCCCCccCCCCCcc
Q 030915           87 TLKNPLSLSEDLFPI  101 (169)
Q Consensus        87 tL~~g~~i~PdlF~~  101 (169)
                      +|..|++|+  +|..
T Consensus        81 ~l~~G~~i~--~~~~   93 (94)
T COG0089          81 TLKEGQSID--FFGG   93 (94)
T ss_pred             EccCCCEEe--eccc
Confidence            999999988  7653

>PRK14548 50S ribosomal protein L23P; Provisional

Probab=99.84  E-value=4.4e-21  Score=140.12  Aligned_cols=69  Identities=29%  Similarity=0.329  Sum_probs=63.7

Q ss_pred             CCcceeecCCCCccc----CCeEEEEeCCCCCHHHHHHHHHHHhCCceeEEEeeecCCcccccCCcccCCCCceEEEEEc
Q 030915           13 TNLPIKLLMPNTFQN----ITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTL   88 (169)
Q Consensus        13 pni~ikpv~tEK~~~----~n~~~F~V~~~atK~eIK~alekiY~VkV~kVnT~~~~GK~kR~~~~~gk~~~~KKAyVtL   88 (169)
                      .+++++|++|||++.    .|+|+|.|+++|||.|||+|||++|||+|.+|||++.++             +||||||+|
T Consensus         2 ~~iI~~PviTEK~~~~~e~~n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~-------------~~KKA~V~L   68 (84)
T PRK14548          2 YSIIKYPLVTEKAMNLIEKENKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPK-------------GEKKAYVKL   68 (84)
T ss_pred             ccchhccccCHHHHHHHHhCCEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC-------------CcEEEEEEe
Confidence            368999999999985    399999999999999999999999999999999999974             699999999


Q ss_pred             CCCCcc
Q 030915           89 KNPLSL   94 (169)
Q Consensus        89 ~~g~~i   94 (169)
                      .+|++.
T Consensus        69 ~~g~~A   74 (84)
T PRK14548         69 AEEYDA   74 (84)
T ss_pred             CCCCcH
Confidence            999874

>TIGR03636 L23_arch archaeal ribosomal protein L23

Probab=99.81  E-value=3e-20  Score=133.74  Aligned_cols=63  Identities=32%  Similarity=0.382  Sum_probs=58.3

Q ss_pred             ecCCCCccc----CCeEEEEeCCCCCHHHHHHHHHHHhCCceeEEEeeecCCcccccCCcccCCCCceEEEEEcCCCCcc
Q 030915           19 LLMPNTFQN----ITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLKNPLSL   94 (169)
Q Consensus        19 pv~tEK~~~----~n~~~F~V~~~atK~eIK~alekiY~VkV~kVnT~~~~GK~kR~~~~~gk~~~~KKAyVtL~~g~~i   94 (169)
                      |++|||++.    .|+|+|.|+++|||+|||+|||++|||+|.+|||++.++             +||||||+|.+|++.
T Consensus         1 P~iTEKs~~~~e~~n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~-------------~~KKA~VtL~~g~~a   67 (77)
T TIGR03636         1 PLVTEKAMNLIEKENKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPR-------------GEKKAYVKLAEEYAA   67 (77)
T ss_pred             CcccHHHHHHHHhCCEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC-------------CceEEEEEECCCCcH
Confidence            788999875    389999999999999999999999999999999999875             799999999999864

This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.

>KOG4089 consensus Predicted mitochondrial ribosomal protein L23 [Translation, ribosomal structure and biogenesis]

Probab=99.81  E-value=5e-20  Score=148.40  Aligned_cols=103  Identities=32%  Similarity=0.364  Sum_probs=89.2

Q ss_pred             CCccCCcc---------eeecCCcceeecCCCCcccCCeEEEEeCCCCCHHHHHHHHHHHhCCceeEEEeeecCC----c
Q 030915            1 MGSRLGTR---------VVHFTNLPIKLLMPNTFQNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEG----K   67 (169)
Q Consensus         1 ~~~r~g~r---------~Iflpni~ikpv~tEK~~~~n~~~F~V~~~atK~eIK~alekiY~VkV~kVnT~~~~G----K   67 (169)
                      |+|++|+|         .|||||++|.++.|-..+++++++|.|++.+||.||++||+.|||++|.+|+|.++.|    +
T Consensus         1 m~s~~~y~~~k~gn~q~rVf~Pn~~~~l~rp~~~q~p~~~~FrVp~~m~k~DvR~YL~~iY~l~v~~vrtrl~~Gk~~~~   80 (165)
T KOG4089|consen    1 MGSRRGYRLYKFGNPQLRVFFPNFWINLVRPLVTQPPKIVKFRVPMSMNKFDVRDYLTHIYDLPVVDVRTRLQHGKDYKK   80 (165)
T ss_pred             CcccceeeeeecCCcceeEecchhHHhhhcccccCCCceEEEEcchhhccccHHHHHHHhcCCceeeeeeeeeechhhhc
Confidence            77777766         5888999999999888888999999999999999999999999999999999999999    4


Q ss_pred             ccccCC---cccCCCCceEEEEEcCCCCccC-CCCCcccc
Q 030915           68 KKKRGG---LLIAKPDYKKAYVTLKNPLSLS-EDLFPIRV  103 (169)
Q Consensus        68 ~kR~~~---~~gk~~~~KKAyVtL~~g~~i~-PdlF~~k~  103 (169)
                      .+.+-.   .+.+..+++-|||.++.++++. ||+|+++.
T Consensus        81 ~k~r~~~~k~i~kdmd~p~~Yv~~pr~~~~~~Pd~~eek~  120 (165)
T KOG4089|consen   81 TKKRLQSPKRIKKDMDEPVAYVEEPRGSKFSFPDFFEEKD  120 (165)
T ss_pred             ceecccccceeecccccceeeecCCCCccccCCccchhhh
Confidence            444322   2334559999999999999999 99999887

>PTZ00191 60S ribosomal protein L23a; Provisional

Probab=99.78  E-value=1.4e-19  Score=143.75  Aligned_cols=73  Identities=26%  Similarity=0.299  Sum_probs=66.4

Q ss_pred             eecCCcceeecCCCCccc----CCeEEEEeCCCCCHHHHHHHHHHHhCCceeEEEeeecCCcccccCCcccCCCCceEEE
Q 030915           10 VHFTNLPIKLLMPNTFQN----ITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAY   85 (169)
Q Consensus        10 Iflpni~ikpv~tEK~~~----~n~~~F~V~~~atK~eIK~alekiY~VkV~kVnT~~~~GK~kR~~~~~gk~~~~KKAy   85 (169)
                      ....++|.+|+.||+++.    .|+|+|.|+++|||.|||+|||++|||+|.+|||+|.++             +|||||
T Consensus        60 md~~~IIk~Pl~TEKa~~~~E~~N~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~-------------g~KKA~  126 (145)
T PTZ00191         60 LDKYSIIKYPLTTEKAMKKIEDNNTLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPD-------------GLKKAY  126 (145)
T ss_pred             CchhhhhhcccccHHHHHHHhhCCEEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCC-------------CceEEE
Confidence            344678999999999985    499999999999999999999999999999999999988             589999


Q ss_pred             EEcCCCCc-cC
Q 030915           86 VTLKNPLS-LS   95 (169)
Q Consensus        86 VtL~~g~~-i~   95 (169)
                      |+|.+|++ |+
T Consensus       127 V~L~~~~~aid  137 (145)
T PTZ00191        127 IRLSPDVDALD  137 (145)
T ss_pred             EEECCCCcHHH
Confidence            99999997 54

>KOG1751 consensus 60s ribosomal protein L23 [Translation, ribosomal structure and biogenesis]

Probab=99.40  E-value=2.6e-13  Score=109.18  Aligned_cols=72  Identities=26%  Similarity=0.288  Sum_probs=62.0

Q ss_pred             eeecCCc-ceeecCCCCccc----CCeEEEEeCCCCCHHHHHHHHHHHhCCceeEEEeeecC-CcccccCCcccCCCCce
Q 030915            9 VVHFTNL-PIKLLMPNTFQN----ITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNME-GKKKKRGGLLIAKPDYK   82 (169)
Q Consensus         9 ~Iflpni-~ikpv~tEK~~~----~n~~~F~V~~~atK~eIK~alekiY~VkV~kVnT~~~~-GK~kR~~~~~gk~~~~K   82 (169)
                      ....+++ |..|+.||+++-    .|+++|.|+..+||+|||++|.+||+++|.+|||+|.+ |.              |
T Consensus        70 kld~y~~iik~plTtEsamKk~ednNtlvf~vd~kankhqiKqAVkkLyd~dvakvntli~p~g~--------------k  135 (157)
T KOG1751|consen   70 KLDHYAIIIKFPLTTESAMKKIEDNNTLVFIVDSKANKHQIKQAVKKLYDTDVAKVNTLIRPDGE--------------K  135 (157)
T ss_pred             cchhhhhHhccccchhhhhcchhhCceeEEEEecccchHHHHHHHHHHhccchhhheeeecCCCc--------------e
Confidence            3444455 788889999874    59999999999999999999999999999999999865 54              8


Q ss_pred             EEEEEcCCCCcc
Q 030915           83 KAYVTLKNPLSL   94 (169)
Q Consensus        83 KAyVtL~~g~~i   94 (169)
                      ||||.|.++++.
T Consensus       136 kayv~la~dyda  147 (157)
T KOG1751|consen  136 KAYVRLAPDYDA  147 (157)
T ss_pred             eEEEecCCchhH
Confidence            999999998864

>KOG4089 consensus Predicted mitochondrial ribosomal protein L23 [Translation, ribosomal structure and biogenesis]

Probab=92.50  E-value=0.0046  Score=50.57  Aligned_cols=93  Identities=25%  Similarity=0.315  Sum_probs=70.3

Q ss_pred             cCCcceeecCCCCcccCCeEEEEeCCCCCHHHHHHHHHHHhCCceeEEEeeecCCcccccCCcccCCCCceEEEEEcCCC
Q 030915           12 FTNLPIKLLMPNTFQNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLKNP   91 (169)
Q Consensus        12 lpni~ikpv~tEK~~~~n~~~F~V~~~atK~eIK~alekiY~VkV~kVnT~~~~GK~kR~~~~~gk~~~~KKAyVtL~~g   91 (169)
                      +.|..++.++|...+.+-.- -  ...+.+..+....+.+++++|.+++|+|+.++....+.......+++++++++..+
T Consensus        12 ~gn~q~rVf~Pn~~~~l~rp-~--~~q~p~~~~FrVp~~m~k~DvR~YL~~iY~l~v~~vrtrl~~Gk~~~~~k~r~~~~   88 (165)
T KOG4089|consen   12 FGNPQLRVFFPNFWINLVRP-L--VTQPPKIVKFRVPMSMNKFDVRDYLTHIYDLPVVDVRTRLQHGKDYKKTKKRLQSP   88 (165)
T ss_pred             cCCcceeEecchhHHhhhcc-c--ccCCCceEEEEcchhhccccHHHHHHHhcCCceeeeeeeeeechhhhcceeccccc
Confidence            45667788888887765331 1  11257788889999999999999999999999887777777777799999999998


Q ss_pred             CccCCC-CCccccchHH
Q 030915           92 LSLSED-LFPIRVIQDE  107 (169)
Q Consensus        92 ~~i~Pd-lF~~k~~~~~  107 (169)
                      ..|..| .++-.-+++.
T Consensus        89 k~i~kdmd~p~~Yv~~p  105 (165)
T KOG4089|consen   89 KRIKKDMDEPVAYVEEP  105 (165)
T ss_pred             ceeecccccceeeecCC
Confidence            888844 6665544433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	169
1p85_R	100	Real Space Refined Coordinates Of The 50s Subunit F		1e-06
2gya_R	92	Structure Of The 50s Subunit Of A Pre-Translocation		1e-06
2j28_T	99	Model Of E. Coli Srp Bound To 70s Rncs Length = 99		1e-06
3fik_T	93	Ternary Complex-Bound E.Coli 70s Ribosome. This Ent		2e-06
3pyo_T	92	Crystal Structure Of A Complex Containing Domain 3		6e-05
3fin_X	93	T. Thermophilus 70s Ribosome In Complex With Mrna,		6e-05
1n88_A	96	Nmr Structure Of The Ribosomal Protein L23 From The		7e-05
1pnu_R	93	Crystal Structure Of A Streptomycin Dependent Ribos		8e-04
1nwx_R	94	Complex Of The Large Ribosomal Subunit From Deinoco		8e-04
1nkw_R	95	Crystal Structure Of The Large Ribosomal Subunit Fr		8e-04

>pdb|1P85|R Chain R, Real Space Refined Coordinates Of The 50s Subunit Fitted Into The Low Resolution Cryo-Em Map Of The Ef-G.Gtp State Of E. Coli 70s Ribosome Length = 100

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/64 (43%), Positives = 40/64 (62%)
Query: 31 IALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLKN 90
          I LK    A+K EIK  ++ L+  EV+ V TL ++GK K+ G  +  + D+KKAYVTLK 
Sbjct: 30 IVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLVVKGKVKRHGQRIGRRSDWKKAYVTLKE 89
Query: 91 PLSL 94
            +L
Sbjct: 90 GQNL 93

>pdb|2GYA|R Chain R, Structure Of The 50s Subunit Of A Pre-Translocational E. Coli Ribosome Obtained By Fitting Atomic Models For Rna And Protein Components Into Cryo-Em Map Emd-1056 Length = 92

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/64 (43%), Positives = 40/64 (62%)
Query: 31 IALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLKN 90
          I LK    A+K EIK  ++ L+  EV+ V TL ++GK K+ G  +  + D+KKAYVTLK 
Sbjct: 24 IVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLVVKGKVKRHGQRIGRRSDWKKAYVTLKE 83
Query: 91 PLSL 94
            +L
Sbjct: 84 GQNL 87

>pdb|2J28|T Chain T, Model Of E. Coli Srp Bound To 70s Rncs Length = 99

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/64 (43%), Positives = 40/64 (62%)
Query: 31 IALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLKN 90
          I LK    A+K EIK  ++ L+  EV+ V TL ++GK K+ G  +  + D+KKAYVTLK 
Sbjct: 30 IVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLVVKGKVKRHGQRIGRRSDWKKAYVTLKE 89
Query: 91 PLSL 94
            +L
Sbjct: 90 GQNL 93

>pdb|3FIK|T Chain T, Ternary Complex-Bound E.Coli 70s Ribosome. This Entry Consists Of The 50s Subunit. Length = 93

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/64 (43%), Positives = 40/64 (62%)
Query: 31 IALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLKN 90
          I LK    A+K EIK  ++ L+  EV+ V TL ++GK K+ G  +  + D+KKAYVTLK 
Sbjct: 30 IVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLVVKGKVKRHGQRIGRRSDWKKAYVTLKE 89
Query: 91 PLSL 94
            +L
Sbjct: 90 GQNL 93

>pdb|3PYO|T Chain T, Crystal Structure Of A Complex Containing Domain 3 From The Psiv Igr Ires Rna Bound To The 70s Ribosome. This File Contains The 50s Subunit Of The First 70s Ribosome. Length = 92

Iteration: 1
 Score = 43.5 bits (101), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 24/52 (46%), Positives = 34/52 (65%)
Query: 37 PSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTL 88
          P A+K EIK  +E+ +  +V KV TL++ GKKK+ G  L  +PD KKA V +
Sbjct: 30 PKATKTEIKNAVETAFKVKVVKVNTLHVRGKKKRLGRYLGKRPDRKKAIVQV 81

>pdb|3FIN|X Chain X, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas And Ef- Tu.Gdp.Kirromycin Ternary Complex, Fitted To A 6.4 A Cryo-Em Map. This File Contains The 50s Subunit Length = 93

Iteration: 1
 Score = 43.5 bits (101), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 24/52 (46%), Positives = 34/52 (65%)
Query: 37 PSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTL 88
          P A+K EIK  +E+ +  +V KV TL++ GKKK+ G  L  +PD KKA V +
Sbjct: 30 PKATKTEIKNAVETAFKVKVVKVNTLHVRGKKKRLGRYLGKRPDRKKAIVQV 81

>pdb|1N88|A Chain A, Nmr Structure Of The Ribosomal Protein L23 From Thermus Thermophilus. Length = 96

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 24/52 (46%), Positives = 34/52 (65%)
Query: 37 PSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTL 88
          P A+K EIK  +E+ +  +V KV TL++ GKKK+ G  L  +PD KKA V +
Sbjct: 32 PKATKTEIKNAVETAFKVKVVKVNTLHVRGKKKRLGRYLGKRPDRKKAIVQV 83

>pdb|1PNU|R Chain R, Crystal Structure Of A Streptomycin Dependent Ribosome From Escherichia Coli, 50s Subunit Of 70s Ribosome. This File, 1pnu, Contains Only Molecules Of The 50s Ribosomal Subunit. The 30s Subunit, Mrna, P-Site Trna, And A-Site Trna Are In The Pdb File 1pns. Length = 93

Iteration: 1
 Score = 39.7 bits (91), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 33/58 (56%)
Query: 37 PSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLKNPLSL 94
          P A+K EIK  ++  +G  V  + T+N+ GK+K+ G  +  + D KKA V L    S+
Sbjct: 30 PKATKTEIKDAIQQAFGVRVIGISTMNVPGKRKRVGRFIGQRNDRKKAIVRLAEGQSI 87

>pdb|1NWX|R Chain R, Complex Of The Large Ribosomal Subunit From Deinococcus Radiodurans With Abt-773 Length = 94

Iteration: 1
 Score = 39.7 bits (91), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 33/58 (56%)
Query: 37 PSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLKNPLSL 94
          P A+K EIK  ++  +G  V  + T+N+ GK+K+ G  +  + D KKA V L    S+
Sbjct: 30 PKATKTEIKDAIQQAFGVRVIGISTMNVPGKRKRVGRFIGQRNDRKKAIVRLAEGQSI 87

>pdb|1NKW|R Chain R, Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans Length = 95

Iteration: 1
 Score = 39.7 bits (91), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 33/58 (56%)
Query: 37 PSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLKNPLSL 94
          P A+K EIK  ++  +G  V  + T+N+ GK+K+ G  +  + D KKA V L    S+
Sbjct: 31 PKATKTEIKDAIQQAFGVRVIGISTMNVPGKRKRVGRFIGQRNDRKKAIVRLAEGQSI 88

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	169
2zjr_Q	95	50S ribosomal protein L23; ribosome, large ribosom	1e-14
3tve_T	92	50S ribosomal protein L23; RNA, ribosome, tRNA, tr	1e-14
3r8s_T	93	50S ribosomal protein L23; protein biosynthesis, R	2e-14
1vq8_S	85	50S ribosomal protein L23P; ribosome 50S, protein-	3e-06
3bbo_V	198	Ribosomal protein L23; large ribosomal subunit, sp	5e-04
3u5e_X	142	60S ribosomal protein L25; translation, ribosome,	7e-04

>2zjr_Q 50S ribosomal protein L23; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.12.1.1 PDB: 1sm1_R* 2aar_R 2d3o_R 2zjp_Q* 2zjq_Q 1nkw_R 3cf5_Q* 3dll_Q* 3pio_Q* 3pip_Q* 1nwy_R* 1nwx_R* 1xbp_R* 1pnu_R 1pny_R 1vor_U 1vou_U 1vow_U 1voy_U 1vp0_U Length = 95

 Score = 64.9 bits (159), Expect = 1e-14
 Identities = 20/53 (37%), Positives = 31/53 (58%)

Query: 37 PSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLK 89
          P A+K EIK  ++  +G  V  + T+N+ GK+K+ G  +  + D KKA V L 
Sbjct: 31 PKATKTEIKDAIQQAFGVRVIGISTMNVPGKRKRVGRFIGQRNDRKKAIVRLA 83

>3tve_T 50S ribosomal protein L23; RNA, ribosome, tRNA, translation, mRNA; 3.10A {Thermus thermophilus} PDB: 3pyr_T 3pyo_T 3pyv_T 3pyt_T 3tvh_T 1n88_A 1vsa_R 1vsp_R 2hgj_W 2hgq_W 2hgu_W 2j01_X 2j03_X 2jl6_X 2jl8_X 2v47_X 2v49_X 2wdi_X 2wdj_X 2wdl_X ... Length = 92

 Score = 64.9 bits (159), Expect = 1e-14
 Identities = 24/53 (45%), Positives = 34/53 (64%)

Query: 37 PSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLK 89
          P A+K EIK  +E+ +  +V KV TL++ GKKK+ G  L  +PD KKA V + 
Sbjct: 30 PKATKTEIKNAVETAFKVKVVKVNTLHVRGKKKRLGRYLGKRPDRKKAIVQVA 82

>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T* 3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M 3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T 1vs6_T ... Length = 93

 Score = 64.5 bits (158), Expect = 2e-14
 Identities = 24/53 (45%), Positives = 35/53 (66%)

Query: 37 PSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLK 89
            A+K EIK  ++ L+  EV+ V TL ++GK K+ G  +  + D+KKAYVTLK
Sbjct: 36 KDATKAEIKAAVQKLFEVEVEVVNTLVVKGKVKRHGQRIGRRSDWKKAYVTLK 88

>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ... Length = 85

 Score = 42.3 bits (100), Expect = 3e-06
 Identities = 18/73 (24%), Positives = 26/73 (35%), Gaps = 24/73 (32%)

Query: 28 ITEIALKTI-----------PSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLI 76
          +TE A+  +             ASK E+   +E  Y   V++V T N    +        
Sbjct: 11 VTEKAMNDMDFQNKLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTMDGE-------- 62

Query: 77 AKPDYKKAYVTLK 89
               KKA V L 
Sbjct: 63 -----KKAVVRLS 70

>3bbo_V Ribosomal protein L23; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1 Length = 198

 Score = 38.1 bits (88), Expect = 5e-04
 Identities = 14/53 (26%), Positives = 20/53 (37%), Gaps = 13/53 (24%)

Query: 37  PSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLK 89
             A K  I+  + + +G +V KV TL                   KKAY+ L 
Sbjct: 140 VRADKKMIREAISNFFGVKVRKVNTLIRPDGT-------------KKAYIMLN 179

>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 1s1i_T 3jyw_T Length = 142

 Score = 37.1 bits (86), Expect = 7e-04
 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 13/53 (24%)

Query: 37  PSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLK 89
             A+K +IK+ ++ LY  +V KV TL                   KKAYV L 
Sbjct: 88  MKANKYQIKKAVKELYEVDVLKVNTLVRPNGT-------------KKAYVRLT 127

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	169
3tve_T	92	50S ribosomal protein L23; RNA, ribosome, tRNA, tr	99.96
2zjr_Q	95	50S ribosomal protein L23; ribosome, large ribosom	99.95
3r8s_T	93	50S ribosomal protein L23; protein biosynthesis, R	99.95
1vq8_S	85	50S ribosomal protein L23P; ribosome 50S, protein-	99.87
3j21_T	86	50S ribosomal protein L23P; archaea, archaeal, KIN	99.85
2zkr_s	156	60S ribosomal protein L23A; protein-RNA complex, 6	99.84
3u5e_X	142	60S ribosomal protein L25; translation, ribosome,	99.8
3iz5_X	152	60S ribosomal protein L23A (L23P); eukaryotic ribo	99.8
3bbo_V	198	Ribosomal protein L23; large ribosomal subunit, sp	99.79
4a17_R	150	RPL23A, 60S ribosomal protein L21; eukaryotic ribo	99.79

>3tve_T 50S ribosomal protein L23; RNA, ribosome, tRNA, translation, mRNA; 3.10A {Thermus thermophilus} PDB: 3pyr_T 3pyo_T 3pyv_T 3pyt_T 3tvh_T 1n88_A 1vsa_R 1vsp_R 2hgj_W 2hgq_W 2hgu_W 2j01_X 2j03_X 2jl6_X 2jl8_X 2v47_X 2v49_X 2wdi_X 2wdj_X 2wdl_X ...

Probab=99.96  E-value=4.4e-29  Score=183.75  Aligned_cols=86  Identities=28%  Similarity=0.363  Sum_probs=81.7

Q ss_pred             CCcceeecCCCCcccC---CeEEEEeCCCCCHHHHHHHHHHHhCCceeEEEeeecCCcccccCCcccCCCCceEEEEEcC
Q 030915           13 TNLPIKLLMPNTFQNI---TEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLK   89 (169)
Q Consensus        13 pni~ikpv~tEK~~~~---n~~~F~V~~~atK~eIK~alekiY~VkV~kVnT~~~~GK~kR~~~~~gk~~~~KKAyVtL~   89 (169)
                      .++++.|++||+++.+   |+|+|.|+++|||+|||+|||++|||+|.+|||+|++||.+|.|...|++++||||||+|+
T Consensus         3 ~~iI~~P~iTEKa~~~~e~n~~~F~V~~~AnK~qIK~aVe~lf~VkV~~VnT~~~~gK~kR~g~~~G~~~~~KKA~VtL~   82 (92)
T 3tve_T            3 YDVILAPVLSEKAYAGFAEGKYTFWVHPKATKTEIKNAVETAFKVKVVKVNTLHVRGKKKRLGRYLGKRPDRKKAIVQVA   82 (92)
T ss_dssp             HHHEEEECCSHHHHTTTTTTEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEEECCCEEESSSCEEECCCEEEEEEEEC
T ss_pred             hheecccccCHHHHHHhhCCEEEEEECCCCCHHHHHHHHHHHhCCceeeeeeeeeCCceeeeccccccCCCceEEEEEcC
Confidence            4679999999999753   9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCccCCCCCc
Q 030915           90 NPLSLSEDLFP  100 (169)
Q Consensus        90 ~g~~i~PdlF~  100 (169)
                      +|++|+  +|+
T Consensus        83 ~g~~Id--~f~   91 (92)
T 3tve_T           83 PGQKIE--ALE   91 (92)
T ss_dssp             TTCCCT--TTC
T ss_pred             CCCccc--CCC
Confidence            999998  886

>2zjr_Q 50S ribosomal protein L23; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.12.1.1 PDB: 1sm1_R* 2aar_R 2d3o_R 2zjp_Q* 2zjq_Q 1nkw_R 3cf5_Q* 3dll_Q* 3pio_Q* 3pip_Q* 1nwy_R* 1nwx_R* 1xbp_R* 1pnu_R 1pny_R 1vor_U 1vou_U 1vow_U 1voy_U 1vp0_U

Probab=99.95  E-value=6.3e-29  Score=183.85  Aligned_cols=88  Identities=24%  Similarity=0.318  Sum_probs=82.7

Q ss_pred             cCCcceeecCCCCccc---CCeEEEEeCCCCCHHHHHHHHHHHhCCceeEEEeeecCCcccccCCcccCCCCceEEEEEc
Q 030915           12 FTNLPIKLLMPNTFQN---ITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTL   88 (169)
Q Consensus        12 lpni~ikpv~tEK~~~---~n~~~F~V~~~atK~eIK~alekiY~VkV~kVnT~~~~GK~kR~~~~~gk~~~~KKAyVtL   88 (169)
                      +.+++++|++|||++.   .|+|+|.|+++|||+|||+|||++|||+|.+|||+|++||.||.|+..|++++||||||+|
T Consensus         3 ~~~iI~~PviTEKs~~~~e~n~y~F~V~~~anK~eIK~aVE~lf~VkV~~VNT~~~~gK~kR~g~~~G~~~~~KKAiVtL   82 (95)
T 2zjr_Q            3 HYDILQAPVISEKAYSAMERGVYSFWVSPKATKTEIKDAIQQAFGVRVIGISTMNVPGKRKRVGRFIGQRNDRKKAIVRL   82 (95)
T ss_dssp             CSSSCCEECCTHHHHHHHTTTCCEEEECSSCTHHHHHHHHHHHHCCCCSEEEECCBCCCCCSSSSCCCCCCCBEEEEEEC
T ss_pred             hHhceeccccCHHHHHHHHCCEEEEEEcCCCCHHHHHHHHHHHhCCCceEEEeEEeCCccceeccccccCCCcEEEEEEe
Confidence            4589999999999985   4779999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCccCCCCCcc
Q 030915           89 KNPLSLSEDLFPI  101 (169)
Q Consensus        89 ~~g~~i~PdlF~~  101 (169)
                      .+|++|+  +|..
T Consensus        83 ~~g~~id--~~~~   93 (95)
T 2zjr_Q           83 AEGQSIE--ALAG   93 (95)
T ss_dssp             CSSCCCS--STTT
T ss_pred             CCCCeee--cccC
Confidence            9999988  8864

>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_T 3j19_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T* 3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M 3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T ...

Probab=99.95  E-value=2e-28  Score=180.57  Aligned_cols=83  Identities=34%  Similarity=0.450  Sum_probs=79.1

Q ss_pred             cCCcceeecCCCCccc----CCeEEEEeCCCCCHHHHHHHHHHHhCCceeEEEeeecCCcccccCCcccCCCCceEEEEE
Q 030915           12 FTNLPIKLLMPNTFQN----ITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVT   87 (169)
Q Consensus        12 lpni~ikpv~tEK~~~----~n~~~F~V~~~atK~eIK~alekiY~VkV~kVnT~~~~GK~kR~~~~~gk~~~~KKAyVt   87 (169)
                      +.++++.|++||+++.    .|+|+|.|+++|||+|||+|||++|||+|.+|||++++||.+|.|...|++++||||||+
T Consensus         7 ~~~iIk~P~iTEKa~~~~e~~n~~~F~V~~~AnK~eIK~AVE~lf~VkV~~VnT~~~~gK~kR~g~~~G~~~~~KKAiVt   86 (93)
T 3r8s_T            7 LLKVLRAPHVSEKASTAMEKSNTIVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLVVKGKVKRHGQRIGRRSDWKKAYVT   86 (93)
T ss_dssp             HHHHEEEECCSHHHHHHHHTTSEEEEEECSSCCHHHHHHHHHHHSCCCCCEEEEEEECCCBCCSSSSCCBCCCEEEEEEE
T ss_pred             HHhhhhccccCHHHHHHHHhCCEEEEEECCCCCHHHHHHHHHHHcCCceEEEEEEEeCCceeeeCCccccCCCcEEEEEE
Confidence            5678999999999975    499999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCcc
Q 030915           88 LKNPLSL   94 (169)
Q Consensus        88 L~~g~~i   94 (169)
                      |++|++|
T Consensus        87 L~~g~~I   93 (93)
T 3r8s_T           87 LKEGQNL   93 (93)
T ss_dssp             CCSCCCC
T ss_pred             cCCcCCC
Confidence            9999986

>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...

Probab=99.87  E-value=6.4e-23  Score=148.97  Aligned_cols=73  Identities=22%  Similarity=0.171  Sum_probs=66.6

Q ss_pred             CCcceeecCCCCccc----CCeEEEEeCCCCCHHHHHHHHHHHhCCceeEEEeeecCCcccccCCcccCCCCceEEEEEc
Q 030915           13 TNLPIKLLMPNTFQN----ITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTL   88 (169)
Q Consensus        13 pni~ikpv~tEK~~~----~n~~~F~V~~~atK~eIK~alekiY~VkV~kVnT~~~~GK~kR~~~~~gk~~~~KKAyVtL   88 (169)
                      .+++++|++|||++.    .|+|+|.|+++|||+|||+|||++|||+|.+|||++.+.             +||||||+|
T Consensus         3 ~~iIk~P~iTEKa~~~~e~~n~~~F~V~~~AnK~qIK~ave~lf~VkV~~VNT~~~~~-------------~~KKA~VtL   69 (85)
T 1vq8_S            3 WDVIKHPHVTEKAMNDMDFQNKLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTMD-------------GEKKAVVRL   69 (85)
T ss_dssp             CCSEEEECCSHHHHHHHHHSCEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTT-------------SSEEEEEEE
T ss_pred             cceeeccccCHHHHHHHHhCCEEEEEECCCCCHHHHHHHHHHHhCCCceEEEeeecCC-------------CceEEEEEE
Confidence            478999999999985    599999999999999999999999999999999999873             599999999


Q ss_pred             CCCCc-cCCCCCc
Q 030915           89 KNPLS-LSEDLFP  100 (169)
Q Consensus        89 ~~g~~-i~PdlF~  100 (169)
                      .+|++ |+  +|.
T Consensus        70 ~~g~~aid--~~~   80 (85)
T 1vq8_S           70 SEDDDAQE--VAS   80 (85)
T ss_dssp             CTTSCHHH--HHT
T ss_pred             CCCCcHHH--HHH
Confidence            99998 77  553

>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=99.85  E-value=9.7e-22  Score=143.08  Aligned_cols=70  Identities=29%  Similarity=0.341  Sum_probs=64.6

Q ss_pred             cCCcceeecCCCCccc----CCeEEEEeCCCCCHHHHHHHHHHHhCCceeEEEeeecCCcccccCCcccCCCCceEEEEE
Q 030915           12 FTNLPIKLLMPNTFQN----ITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVT   87 (169)
Q Consensus        12 lpni~ikpv~tEK~~~----~n~~~F~V~~~atK~eIK~alekiY~VkV~kVnT~~~~GK~kR~~~~~gk~~~~KKAyVt   87 (169)
                      ..++++.|++||+++.    .|+|+|.|+++|||+|||+|||++|||+|.+|||++.+.             +||||||+
T Consensus         3 ~~~iIk~P~iTEKa~~~~e~~n~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~-------------~~KKA~V~   69 (86)
T 3j21_T            3 PYKVIIRPVVTEKAISLIEKENKLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPR-------------GEKKAYVK   69 (86)
T ss_dssp             CCCCEEECCCSHHHHHHHHTSCEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECTT-------------SCEEEEEE
T ss_pred             hHHhhhccccCHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCC-------------CceEEEEE
Confidence            4688999999999975    499999999999999999999999999999999999874             58999999


Q ss_pred             cCCCCcc
Q 030915           88 LKNPLSL   94 (169)
Q Consensus        88 L~~g~~i   94 (169)
                      |.+|++.
T Consensus        70 L~~~~~a   76 (86)
T 3j21_T           70 LKPEYSA   76 (86)
T ss_dssp             ECTTSCH
T ss_pred             cCCCCcH
Confidence            9999974

>2zkr_s 60S ribosomal protein L23A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}

Probab=99.84  E-value=1.8e-21  Score=155.06  Aligned_cols=76  Identities=25%  Similarity=0.255  Sum_probs=65.6

Q ss_pred             eeecCCcceeecCCCCccc----CCeEEEEeCCCCCHHHHHHHHHHHhCCceeEEEeeecCCcccccCCcccCCCCceEE
Q 030915            9 VVHFTNLPIKLLMPNTFQN----ITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKA   84 (169)
Q Consensus         9 ~Iflpni~ikpv~tEK~~~----~n~~~F~V~~~atK~eIK~alekiY~VkV~kVnT~~~~GK~kR~~~~~gk~~~~KKA   84 (169)
                      .....++|+.|++||+++.    .|+|+|.|+++|||+|||+|||+||||+|.+|||+|++|             +||||
T Consensus        70 kmd~~~iIk~PliTEKa~~~~E~~n~yvF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~-------------~~KKA  136 (156)
T 2zkr_s           70 KLDHYAIIKFPLTTESAMKKIEDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPD-------------GEKKA  136 (156)
T ss_dssp             ------CEEEECCSHHHHHHHHHHCEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECSS-------------SCEEE
T ss_pred             cCCHHHhHhcccccHHHHHHHHhCCcEEEEEECCCCHHHHHHHHHHHhCCcceEEEeeEcCC-------------CceEE
Confidence            3456789999999999986    389999999999999999999999999999999999998             49999


Q ss_pred             EEEcCCCCc-cCCCCC
Q 030915           85 YVTLKNPLS-LSEDLF   99 (169)
Q Consensus        85 yVtL~~g~~-i~PdlF   99 (169)
                      ||+|.+|++ |+  +|
T Consensus       137 iVtL~~g~~aid--~~  150 (156)
T 2zkr_s          137 YVRLAPDYDALD--VA  150 (156)
T ss_dssp             EEEECTTSCHHH--HH
T ss_pred             EEEECCCCcHHH--HH
Confidence            999999987 76  55

>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T

Probab=99.80  E-value=2.5e-20  Score=146.55  Aligned_cols=72  Identities=25%  Similarity=0.261  Sum_probs=65.9

Q ss_pred             eeecCCcceeecCCCCccc----CCeEEEEeCCCCCHHHHHHHHHHHhCCceeEEEeeecCCcccccCCcccCCCCceEE
Q 030915            9 VVHFTNLPIKLLMPNTFQN----ITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKA   84 (169)
Q Consensus         9 ~Iflpni~ikpv~tEK~~~----~n~~~F~V~~~atK~eIK~alekiY~VkV~kVnT~~~~GK~kR~~~~~gk~~~~KKA   84 (169)
                      .....++|+.|++||+++.    .|+|+|.|+++|||+|||+|||++|||+|.+|||+|+++             +||||
T Consensus        56 kld~~~IIk~PliTEKa~~~~E~~N~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~-------------g~KKA  122 (142)
T 3u5e_X           56 RLDSYKVIEQPITSETAMKKVEDGNILVFQVSMKANKYQIKKAVKELYEVDVLKVNTLVRPN-------------GTKKA  122 (142)
T ss_dssp             TTCHHHHEEEECCCHHHHHHHHHHCEEEEEECTTCCHHHHHHHHHHHHSCCEEEEEEEECTT-------------SCEEE
T ss_pred             CCCHHHhhhcCCcCHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCC-------------CceEE
Confidence            3456678999999999975    399999999999999999999999999999999999986             59999


Q ss_pred             EEEcCCCCc
Q 030915           85 YVTLKNPLS   93 (169)
Q Consensus        85 yVtL~~g~~   93 (169)
                      ||+|.+|++
T Consensus       123 yV~L~~~~d  131 (142)
T 3u5e_X          123 YVRLTADYD  131 (142)
T ss_dssp             EEEECTTCC
T ss_pred             EEEeCCCCc
Confidence            999999986

>3bbo_V Ribosomal protein L23; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1

Probab=99.79  E-value=5e-21  Score=156.55  Aligned_cols=77  Identities=19%  Similarity=0.271  Sum_probs=68.9

Q ss_pred             eeecCCcceeecCCCCccc----CCeEEEEeCCCCCHHHHHHHHHHHhCCceeEEEeeecCCcccccCCcccCCCCceEE
Q 030915            9 VVHFTNLPIKLLMPNTFQN----ITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKA   84 (169)
Q Consensus         9 ~Iflpni~ikpv~tEK~~~----~n~~~F~V~~~atK~eIK~alekiY~VkV~kVnT~~~~GK~kR~~~~~gk~~~~KKA   84 (169)
                      ...+.++|++|++|||++.    .|+|+|.|+++|||+|||+|||++|||+|.+|||+|++|             +||||
T Consensus       108 kMd~ydIIk~PvITEKAmkliE~nNkyvF~Vd~kANK~QIKqAVEkLFdVKV~kVNTln~~g-------------g~KKA  174 (198)
T 3bbo_V          108 ILDVYQILQSPIITEAAIKNIADENSLLFTVDVRADKKMIREAISNFFGVKVRKVNTLIRPD-------------GTKKA  174 (198)
T ss_dssp             --CCCCCBCCCCCCHHHHHHHHTSCEECCEECTTCCHHHHHHTTTTTSCCCEEECCCEEETT-------------TEEEC
T ss_pred             cCCHhheeeccccCHHHHHHHHhCCEEEEEECCCCCHHHHHHHHHHHhCCceeEEEeeEcCC-------------CeEEE
Confidence            3556689999999999985    489999999999999999999999999999999999998             49999


Q ss_pred             EEEcCCCCc-cCCCCCc
Q 030915           85 YVTLKNPLS-LSEDLFP  100 (169)
Q Consensus        85 yVtL~~g~~-i~PdlF~  100 (169)
                      ||+|.+|++ |+  +|.
T Consensus       175 yVtLaeG~~AID--~an  189 (198)
T 3bbo_V          175 YIMLNKEYNASE--LAK  189 (198)
T ss_dssp             CEEECTTTCTTT--HHH
T ss_pred             EEEeCCCCchHH--HHH
Confidence            999999997 77  553

>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R

Probab=99.79  E-value=4.9e-20  Score=145.95  Aligned_cols=71  Identities=24%  Similarity=0.272  Sum_probs=65.4

Q ss_pred             eecCCcceeecCCCCccc----CCeEEEEeCCCCCHHHHHHHHHHHhCCceeEEEeeecCCcccccCCcccCCCCceEEE
Q 030915           10 VHFTNLPIKLLMPNTFQN----ITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAY   85 (169)
Q Consensus        10 Iflpni~ikpv~tEK~~~----~n~~~F~V~~~atK~eIK~alekiY~VkV~kVnT~~~~GK~kR~~~~~gk~~~~KKAy   85 (169)
                      ....++|+.|++||+++.    .|+|+|.|+++|||+|||+|||++|||+|.+|||+|+++             +|||||
T Consensus        65 ld~y~IIk~PliTEKa~~~~E~~N~~vF~Vd~kAnK~qIK~AVEklf~VkV~kVNTl~~p~-------------g~KKAy  131 (150)
T 4a17_R           65 LDNHSVVKTPLTTEKAMKKMEDENTMVFYVHNRSTKPQIKSAFEKLYNVKVRSVNTLNTIT-------------GNKKAY  131 (150)
T ss_dssp             CCHHHHEEEECCSHHHHHHHHHSSEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTT-------------SCEEEE
T ss_pred             CCHHHhhhccccCHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCC-------------CcEEEE
Confidence            355678999999999974    599999999999999999999999999999999999986             589999


Q ss_pred             EEcCCCCc
Q 030915           86 VTLKNPLS   93 (169)
Q Consensus        86 VtL~~g~~   93 (169)
                      |+|.+|++
T Consensus       132 V~La~~~d  139 (150)
T 4a17_R          132 IRLAADSD  139 (150)
T ss_dssp             EEECSSSC
T ss_pred             EEcCCCCc
Confidence            99999986

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	169
d2qamt1	93	d.12.1.1 (T:1-93) Ribosomal protein L23 {Escherich	7e-14
d2j01x1	93	d.12.1.1 (X:3-95) Ribosomal protein L23 {Thermus t	3e-13
d2zjrq1	93	d.12.1.1 (Q:2-94) Ribosomal protein L23 {Deinococc	3e-12
d1vqos1	81	d.12.1.1 (S:1-81) Ribosomal protein L23 {Archaeon	4e-06

>d2qamt1 d.12.1.1 (T:1-93) Ribosomal protein L23 {Escherichia coli [TaxId: 562]} Length = 93

class: Alpha and beta proteins (a+b)
fold: Ribosomal proteins S24e, L23 and L15e
superfamily: Ribosomal proteins S24e, L23 and L15e
family: L23p
domain: Ribosomal protein L23
species: Escherichia coli [TaxId: 562]

 Score = 61.7 bits (150), Expect = 7e-14
 Identities = 27/59 (45%), Positives = 38/59 (64%)

Query: 31 IALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLK 89
          I LK    A+K EIK  ++ L+  EV+ V TL ++GK K+ G  +  + D+KKAYVTLK
Sbjct: 30 IVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLVVKGKVKRHGQRIGRRSDWKKAYVTLK 88

>d2j01x1 d.12.1.1 (X:3-95) Ribosomal protein L23 {Thermus thermophilus [TaxId: 274]} Length = 93

class: Alpha and beta proteins (a+b)
fold: Ribosomal proteins S24e, L23 and L15e
superfamily: Ribosomal proteins S24e, L23 and L15e
family: L23p
domain: Ribosomal protein L23
species: Thermus thermophilus [TaxId: 274]

 Score = 59.7 bits (145), Expect = 3e-13
 Identities = 24/59 (40%), Positives = 34/59 (57%)

Query: 31 IALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLK 89
                P A+K EIK  +E+ +  +V KV TL++ GKKK+ G  L  +PD KKA V + 
Sbjct: 24 YTFWVHPKATKTEIKNAVETAFKVKVVKVNTLHVRGKKKRLGRYLGKRPDRKKAIVQVA 82

>d2zjrq1 d.12.1.1 (Q:2-94) Ribosomal protein L23 {Deinococcus radiodurans [TaxId: 1299]} Length = 93

class: Alpha and beta proteins (a+b)
fold: Ribosomal proteins S24e, L23 and L15e
superfamily: Ribosomal proteins S24e, L23 and L15e
family: L23p
domain: Ribosomal protein L23
species: Deinococcus radiodurans [TaxId: 1299]

 Score = 57.4 bits (139), Expect = 3e-12
 Identities = 20/59 (33%), Positives = 32/59 (54%)

Query: 31 IALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLK 89
           +    P A+K EIK  ++  +G  V  + T+N+ GK+K+ G  +  + D KKA V L 
Sbjct: 24 YSFWVSPKATKTEIKDAIQQAFGVRVIGISTMNVPGKRKRVGRFIGQRNDRKKAIVRLA 82

>d1vqos1 d.12.1.1 (S:1-81) Ribosomal protein L23 {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 81

class: Alpha and beta proteins (a+b)
fold: Ribosomal proteins S24e, L23 and L15e
superfamily: Ribosomal proteins S24e, L23 and L15e
family: L23p
domain: Ribosomal protein L23
species: Archaeon Haloarcula marismortui [TaxId: 2238]

 Score = 40.9 bits (96), Expect = 4e-06
 Identities = 18/73 (24%), Positives = 26/73 (35%), Gaps = 24/73 (32%)

Query: 28 ITEIALKTI-----------PSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLI 76
          +TE A+  +             ASK E+   +E  Y   V++V T N    +        
Sbjct: 10 VTEKAMNDMDFQNKLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTMDGE-------- 61

Query: 77 AKPDYKKAYVTLK 89
               KKA V L 
Sbjct: 62 -----KKAVVRLS 69

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	169
d2zjrq1	93	Ribosomal protein L23 {Deinococcus radiodurans [Ta	99.95
d2j01x1	93	Ribosomal protein L23 {Thermus thermophilus [TaxId	99.94
d2qamt1	93	Ribosomal protein L23 {Escherichia coli [TaxId: 56	99.94
d1vqos1	81	Ribosomal protein L23 {Archaeon Haloarcula marismo	99.84

>d2zjrq1 d.12.1.1 (Q:2-94) Ribosomal protein L23 {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal proteins S24e, L23 and L15e
superfamily: Ribosomal proteins S24e, L23 and L15e
family: L23p
domain: Ribosomal protein L23
species: Deinococcus radiodurans [TaxId: 1299]

Probab=99.95  E-value=4.9e-29  Score=181.99  Aligned_cols=88  Identities=24%  Similarity=0.318  Sum_probs=83.6

Q ss_pred             cCCcceeecCCCCccc---CCeEEEEeCCCCCHHHHHHHHHHHhCCceeEEEeeecCCcccccCCcccCCCCceEEEEEc
Q 030915           12 FTNLPIKLLMPNTFQN---ITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTL   88 (169)
Q Consensus        12 lpni~ikpv~tEK~~~---~n~~~F~V~~~atK~eIK~alekiY~VkV~kVnT~~~~GK~kR~~~~~gk~~~~KKAyVtL   88 (169)
                      ..+++++|++|||++.   .|+|+|.|+++|||.|||+|||++|+|+|.+|||+|.+||.+|.++..|++++||||||+|
T Consensus         2 ~ydvi~~P~iTEKs~~~~e~n~y~F~V~~~atK~~Ik~ave~lf~VkV~~Vnt~~~~gK~kr~~~~~g~~~~~KKAiVtL   81 (93)
T d2zjrq1           2 HYDILQAPVISEKAYSAMERGVYSFWVSPKATKTEIKDAIQQAFGVRVIGISTMNVPGKRKRVGRFIGQRNDRKKAIVRL   81 (93)
T ss_dssp             CSSSCCEECCTHHHHHHHTTTCCEEEECSSCTHHHHHHHHHHHHCCCCSEEEECCBCCCCCSSSSCCCCCCCBEEEEEEC
T ss_pred             cccEEeecccCHHHHHHHHCCEEEEEEeCCCCHHHHHHHHHHHcCCCeEEEEEEEeCCCceEECCcceecCCCEEEEEEc
Confidence            3689999999999975   4999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCccCCCCCcc
Q 030915           89 KNPLSLSEDLFPI  101 (169)
Q Consensus        89 ~~g~~i~PdlF~~  101 (169)
                      .+|++|+  +|+.
T Consensus        82 ~~g~~I~--~~~g   92 (93)
T d2zjrq1          82 AEGQSIE--ALAG   92 (93)
T ss_dssp             CSSCCCS--STTT
T ss_pred             CCcCccc--ccCC
Confidence            9999998  9875

>d2j01x1 d.12.1.1 (X:3-95) Ribosomal protein L23 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal proteins S24e, L23 and L15e
superfamily: Ribosomal proteins S24e, L23 and L15e
family: L23p
domain: Ribosomal protein L23
species: Thermus thermophilus [TaxId: 274]

Probab=99.94  E-value=6e-29  Score=181.36  Aligned_cols=87  Identities=28%  Similarity=0.349  Sum_probs=82.7

Q ss_pred             CCcceeecCCCCccc---CCeEEEEeCCCCCHHHHHHHHHHHhCCceeEEEeeecCCcccccCCcccCCCCceEEEEEcC
Q 030915           13 TNLPIKLLMPNTFQN---ITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLK   89 (169)
Q Consensus        13 pni~ikpv~tEK~~~---~n~~~F~V~~~atK~eIK~alekiY~VkV~kVnT~~~~GK~kR~~~~~gk~~~~KKAyVtL~   89 (169)
                      .+++++|++|||++.   .|+|+|.|+++|||.|||+|||.+|||+|.+|||++++||.+|.++..|++++||||||+|+
T Consensus         3 ydvi~~PiiTEKs~~l~e~n~y~F~V~~~atK~eIK~ave~~f~VkV~~Vnt~~~~gK~kr~~~~~g~~~~~KKA~V~L~   82 (93)
T d2j01x1           3 YDVILAPVLSEKAYAGFAEGKYTFWVHPKATKTEIKNAVETAFKVKVVKVNTLHVRGKKKRLGRYLGKRPDRKKAIVQVA   82 (93)
T ss_dssp             STTCCEECCSHHHHHHHTSSCCCEECCSSSCCTTCHHHHTTTTTCCCCCBCCCCCCCCCCSSCCCCSCCCCBCCBCCSTT
T ss_pred             hheeeccccCHhHhhhHhCCeEEEEEeCCCCHHHHHHHHHHHhCCCeeEEEEEEeCCceeEeCCcccccCCCEEEEEEcC
Confidence            578999999999875   49999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCccCCCCCcc
Q 030915           90 NPLSLSEDLFPI  101 (169)
Q Consensus        90 ~g~~i~PdlF~~  101 (169)
                      +|++|+  +|..
T Consensus        83 ~g~~I~--~~~g   92 (93)
T d2j01x1          83 PGQKIE--ALEG   92 (93)
T ss_dssp             TCCSSS--STTC
T ss_pred             CcCEec--ccCC
Confidence            999999  8863

>d2qamt1 d.12.1.1 (T:1-93) Ribosomal protein L23 {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal proteins S24e, L23 and L15e
superfamily: Ribosomal proteins S24e, L23 and L15e
family: L23p
domain: Ribosomal protein L23
species: Escherichia coli [TaxId: 562]

Probab=99.94  E-value=2.4e-28  Score=178.27  Aligned_cols=83  Identities=34%  Similarity=0.450  Sum_probs=79.4

Q ss_pred             cCCcceeecCCCCccc----CCeEEEEeCCCCCHHHHHHHHHHHhCCceeEEEeeecCCcccccCCcccCCCCceEEEEE
Q 030915           12 FTNLPIKLLMPNTFQN----ITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVT   87 (169)
Q Consensus        12 lpni~ikpv~tEK~~~----~n~~~F~V~~~atK~eIK~alekiY~VkV~kVnT~~~~GK~kR~~~~~gk~~~~KKAyVt   87 (169)
                      +.+++++|++|||++.    .|+|+|.|+++|||.|||+|||++|||+|.+|||+|.+||.+|.++..|++++||||||+
T Consensus         7 ~~~ii~~PviTEKs~~~~e~~n~ytF~V~~~AtK~eIK~ave~~f~VkV~~Vnt~~~~gK~kr~~~~~g~~~~~KKAiVt   86 (93)
T d2qamt1           7 LLKVLRAPHVSEKASTAMEKSNTIVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLVVKGKVKRHGQRIGRRSDWKKAYVT   86 (93)
T ss_dssp             TCCCEEEECCCHHHHTHHHHSSCCCEEECSSCCSHHHHHHHHHTTCCCCCCCCCEEECCCEECSTTCCEECCCEEECCCC
T ss_pred             HHHHHhccccCHHHHHhHhhCCEEEEEECCCCCHHHHHHHHHHHhCCcceEEEEEEeCCceeEeCCcccccCCCEEEEEE
Confidence            5699999999999874    499999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCcc
Q 030915           88 LKNPLSL   94 (169)
Q Consensus        88 L~~g~~i   94 (169)
                      |++|++|
T Consensus        87 L~~g~~I   93 (93)
T d2qamt1          87 LKEGQNL   93 (93)
T ss_dssp             CSSCCCC
T ss_pred             cCCCCcC
Confidence            9999986

>d1vqos1 d.12.1.1 (S:1-81) Ribosomal protein L23 {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal proteins S24e, L23 and L15e
superfamily: Ribosomal proteins S24e, L23 and L15e
family: L23p
domain: Ribosomal protein L23
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=99.84  E-value=2.2e-21  Score=138.12  Aligned_cols=69  Identities=23%  Similarity=0.177  Sum_probs=63.8

Q ss_pred             CCcceeecCCCCccc----CCeEEEEeCCCCCHHHHHHHHHHHhCCceeEEEeeecCCcccccCCcccCCCCceEEEEEc
Q 030915           13 TNLPIKLLMPNTFQN----ITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTL   88 (169)
Q Consensus        13 pni~ikpv~tEK~~~----~n~~~F~V~~~atK~eIK~alekiY~VkV~kVnT~~~~GK~kR~~~~~gk~~~~KKAyVtL   88 (169)
                      .+++++|++|||++.    .|+|+|.|+++|||.|||+|||++|+|+|.+|||++.+|+             +|||||+|
T Consensus         2 y~iI~~P~iTEKs~~~~e~~n~y~F~V~~~A~K~~IK~AVe~lf~VkV~~Vnt~~~~~~-------------~KkA~V~L   68 (81)
T d1vqos1           2 WDVIKHPHVTEKAMNDMDFQNKLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTMDG-------------EKKAVVRL   68 (81)
T ss_dssp             CCSEEEECCSHHHHHHHHHSCEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTTS-------------SEEEEEEE
T ss_pred             cceeeccccCHHHHHHHHhCCEEEEEEcCcCCHHHHHHHHHHHcCCceeEEEEeEcCCC-------------cEEEEEEe
Confidence            578999999999864    4999999999999999999999999999999999999875             59999999


Q ss_pred             CCCCcc
Q 030915           89 KNPLSL   94 (169)
Q Consensus        89 ~~g~~i   94 (169)
                      .+|+++
T Consensus        69 ~~~~~a   74 (81)
T d1vqos1          69 SEDDDA   74 (81)
T ss_dssp             CTTSCH
T ss_pred             CCCCcH
Confidence            999874