Citrus Sinensis ID: 030930

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------17
MVQTLAMPVAPALSVICNGHNNNLLTNASLSFPVSKQPQYPGLSIQCARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKITKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKKAPR
cccccccccccHHHHHHccccccccccccEEccccccccccccccccEEEEcccccccccEEEEEEEEEcccHHHHHHHHHHccccccccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccc
cHHHHcccHHHHHHHHHccccccccccccEEEcccccccccccEEEEEEEEEcccccccEEEEEEEEEEccccHHHHHHHHHcccccccHccccHHHHHHHHHHHHHcEEcccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccEEcccccccc
mvqtlampvaPALSVICnghnnnlltnaslsfpvskqpqypglsiqcarvggveipnnkriEYSLQYIHGVGRTRARQILVDLKMENKITKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCyrgirhiqglpcrgqhtknncrtlKGKRVAIagkkkapr
MVQTLAMPVAPALSVICNGHNNNLLTNASLSFPVSKQPQYPGLSIQCARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMenkitkdmseeelITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIrhiqglpcrgqhtknncrtlkgkrvaiagkkkapr
MVQTLAMPVAPALSVICNGHNNNLLTNASLSFPVSKQPQYPGLSIQCARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKITKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKKAPR
*******PVAPALSVICNGHNNNLLTNASLSFPVSKQPQYPGLSIQCARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKITKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLK**************
*********APALSVICNGHNNNL********************IQCARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKITKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRV**********
MVQTLAMPVAPALSVICNGHNNNLLTNASLSFPVSKQPQYPGLSIQCARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKITKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKKAPR
****LAMPVAPALSVICNGHNNNLLTNASLSFPVSKQPQYPGLSIQCARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKITKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPC***************************
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MVQTLAMPVAPALSVICNGHNNNLLTNASLSFPVSKQPQYPGLSIQCARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKITKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKKAPR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query169 2.2.26 [Sep-21-2011]
P42732169 30S ribosomal protein S13 yes no 0.911 0.911 0.779 3e-67
P82163145 30S ribosomal protein S13 N/A no 0.710 0.827 0.621 1e-41
Q9CA19154 Small ribosomal subunit p no no 0.863 0.948 0.466 5e-32
Q03EE0121 30S ribosomal protein S13 yes no 0.710 0.991 0.528 8e-30
Q9RDV8124 30S ribosomal protein S13 yes no 0.704 0.959 0.55 9e-30
A5IYW1123 30S ribosomal protein S13 yes no 0.698 0.959 0.546 1e-29
Q65P81121 30S ribosomal protein S13 yes no 0.710 0.991 0.553 6e-29
O50632121 30S ribosomal protein S13 yes no 0.710 0.991 0.545 8e-29
A9NEF8124 30S ribosomal protein S13 yes no 0.727 0.991 0.508 8e-29
B3PMM3122 30S ribosomal protein S13 yes no 0.698 0.967 0.596 8e-29
>sp|P42732|RR13_ARATH 30S ribosomal protein S13, chloroplastic OS=Arabidopsis thaliana GN=RPS13 PE=2 SV=1 Back     alignment and function desciption
 Score =  253 bits (647), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 120/154 (77%), Positives = 134/154 (87%)

Query: 1   MVQTLAMPVAPALSVICNGHNNNLLTNASLSFPVSKQPQYPGLSIQCARVGGVEIPNNKR 60
           M Q +AMPVA +LS+ICN   +N L+  +L+ P S  P    LSI+CARVGGVEIP NKR
Sbjct: 1   MAQMVAMPVAHSLSLICNWAKSNPLSRNTLALPASNTPNKQSLSIRCARVGGVEIPANKR 60

Query: 61  IEYSLQYIHGVGRTRARQILVDLKMENKITKDMSEEELITIRDEVSKYMIEGDLRRFNAL 120
           IEYSLQYIHG+GRTRARQILVDL+MENKITKDM+EEELI +RDEVSKYMIEGDLRRFNAL
Sbjct: 61  IEYSLQYIHGIGRTRARQILVDLQMENKITKDMAEEELIILRDEVSKYMIEGDLRRFNAL 120

Query: 121 AIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTL 154
           AI+RLKEIQCYRG+RHIQGLPCRGQ TKNNCRTL
Sbjct: 121 AIKRLKEIQCYRGVRHIQGLPCRGQRTKNNCRTL 154
Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA.
Arabidopsis thaliana (taxid: 3702)
>sp|P82163|RR13_SPIOL 30S ribosomal protein S13, chloroplastic OS=Spinacia oleracea GN=RPS13 PE=1 SV=2 Back     alignment and function description
>sp|Q9CA19|RT13_ARATH Small ribosomal subunit protein S13, mitochondrial OS=Arabidopsis thaliana GN=RPS13 PE=2 SV=1 Back     alignment and function description
>sp|Q03EE0|RS13_PEDPA 30S ribosomal protein S13 OS=Pediococcus pentosaceus (strain ATCC 25745 / 183-1w) GN=rpsM PE=3 SV=1 Back     alignment and function description
>sp|Q9RDV8|RS13_MYCGA 30S ribosomal protein S13 OS=Mycoplasma gallisepticum (strain R(low / passage 15 / clone 2)) GN=rpsM PE=3 SV=3 Back     alignment and function description
>sp|A5IYW1|RS13_MYCAP 30S ribosomal protein S13 OS=Mycoplasma agalactiae (strain PG2) GN=rpsM PE=3 SV=1 Back     alignment and function description
>sp|Q65P81|RS13_BACLD 30S ribosomal protein S13 OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=rpsM PE=3 SV=1 Back     alignment and function description
>sp|O50632|RS13_BACHD 30S ribosomal protein S13 OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) GN=rpsM PE=3 SV=1 Back     alignment and function description
>sp|A9NEF8|RS13_ACHLI 30S ribosomal protein S13 OS=Acholeplasma laidlawii (strain PG-8A) GN=rpsM PE=3 SV=1 Back     alignment and function description
>sp|B3PMM3|RS13_MYCA5 30S ribosomal protein S13 OS=Mycoplasma arthritidis (strain 158L3-1) GN=rpsM PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query169
312985275168 chloroplast 30S ribosomal protein S13 [H 0.994 1.0 0.816 5e-75
224066873168 predicted protein [Populus trichocarpa] 0.994 1.0 0.786 5e-72
224082224168 predicted protein [Populus trichocarpa] 0.994 1.0 0.786 1e-71
225459459167 PREDICTED: 30S ribosomal protein S13, ch 0.982 0.994 0.784 9e-71
351724017162 uncharacterized protein LOC100500355 [Gl 0.952 0.993 0.759 3e-68
388512017164 unknown [Lotus japonicus] 0.964 0.993 0.759 4e-68
351727919162 uncharacterized protein LOC100499902 [Gl 0.952 0.993 0.746 8e-68
388514311164 unknown [Lotus japonicus] 0.964 0.993 0.753 1e-67
357461657166 30S ribosomal protein S13 [Medicago trun 0.964 0.981 0.738 8e-66
18417346169 30S ribosomal protein S13 [Arabidopsis t 0.911 0.911 0.779 1e-65
>gi|312985275|gb|ADR30788.1| chloroplast 30S ribosomal protein S13 [Hevea brasiliensis] Back     alignment and taxonomy information
 Score =  285 bits (729), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 138/169 (81%), Positives = 151/169 (89%), Gaps = 1/169 (0%)

Query: 1   MVQTLAMPVAPALSVICNGHNNNLLTNASLSFPVSKQPQYPGLSIQCARVGGVEIPNNKR 60
           M QTLAMPVAP+LS+ICNG  NN L+   +S P+S  P+  GLSIQCARVGGVEIPNNKR
Sbjct: 1   MAQTLAMPVAPSLSLICNGWRNNSLSTF-VSLPISNPPKIHGLSIQCARVGGVEIPNNKR 59

Query: 61  IEYSLQYIHGVGRTRARQILVDLKMENKITKDMSEEELITIRDEVSKYMIEGDLRRFNAL 120
           +EYSLQYIHGVGR+RARQIL DL M+NKITKD+SEEELIT+RDEVSKYMIEGDLRRFNAL
Sbjct: 60  VEYSLQYIHGVGRSRARQILSDLSMQNKITKDLSEEELITLRDEVSKYMIEGDLRRFNAL 119

Query: 121 AIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKKAPR 169
            IR LKEIQC+RGIRHIQGLPCRGQ TKNNCRTLKGKRV +AGKKKAPR
Sbjct: 120 NIRGLKEIQCHRGIRHIQGLPCRGQRTKNNCRTLKGKRVTVAGKKKAPR 168

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224066873|ref|XP_002302256.1| predicted protein [Populus trichocarpa] gi|118488232|gb|ABK95935.1| unknown [Populus trichocarpa] gi|222843982|gb|EEE81529.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224082224|ref|XP_002306609.1| predicted protein [Populus trichocarpa] gi|222856058|gb|EEE93605.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225459459|ref|XP_002285833.1| PREDICTED: 30S ribosomal protein S13, chloroplastic [Vitis vinifera] gi|302141873|emb|CBI19076.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|351724017|ref|NP_001236787.1| uncharacterized protein LOC100500355 [Glycine max] gi|255630109|gb|ACU15408.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|388512017|gb|AFK44070.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|351727919|ref|NP_001237689.1| uncharacterized protein LOC100499902 [Glycine max] gi|255627531|gb|ACU14110.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|388514311|gb|AFK45217.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|357461657|ref|XP_003601110.1| 30S ribosomal protein S13 [Medicago truncatula] gi|355490158|gb|AES71361.1| 30S ribosomal protein S13 [Medicago truncatula] gi|388516343|gb|AFK46233.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|18417346|ref|NP_568299.1| 30S ribosomal protein S13 [Arabidopsis thaliana] gi|1173194|sp|P42732.1|RR13_ARATH RecName: Full=30S ribosomal protein S13, chloroplastic; AltName: Full=CS13; Flags: Precursor gi|16767|emb|CAA79013.1| chloroplast 30S ribosomal protein S13 [Arabidopsis thaliana] gi|662869|emb|CAA88028.1| chloroplast ribosomal protein S13 [Arabidopsis thaliana] gi|1107483|emb|CAA63021.1| 30S ribosomal protein S13 [Arabidopsis thaliana] gi|1515107|emb|CAA60413.1| plastid ribosomal protein S13 [Arabidopsis thaliana] gi|14517397|gb|AAK62589.1| AT5g14320/F18O22_110 [Arabidopsis thaliana] gi|15450549|gb|AAK96452.1| AT5g14320/F18O22_110 [Arabidopsis thaliana] gi|332004633|gb|AED92016.1| 30S ribosomal protein S13 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query169
TAIR|locus:2145618169 EMB3137 "EMBRYO DEFECTIVE 3137 1.0 1.0 0.769 8.2e-67
UNIPROTKB|Q0DPA4203 Os03g0704000 "Os03g0704000 pro 0.627 0.522 0.675 1.3e-36
UNIPROTKB|A8JDP6164 PRPS13 "Plastid ribosomal prot 0.781 0.804 0.568 1.1e-32
TAIR|locus:2203216154 AT1G77750 [Arabidopsis thalian 0.893 0.980 0.456 7.7e-32
UNIPROTKB|P20282121 rpsM "30S ribosomal protein S1 0.704 0.983 0.541 5e-28
TIGR_CMR|BA_0135121 BA_0135 "ribosomal protein S13 0.704 0.983 0.508 5.7e-27
UNIPROTKB|O66486126 rpsM "30S ribosomal protein S1 0.710 0.952 0.491 9.4e-27
TIGR_CMR|CHY_2284123 CHY_2284 "ribosomal protein S1 0.698 0.959 0.5 9.4e-27
UNIPROTKB|Q749B0122 rpsM "30S ribosomal protein S1 0.704 0.975 0.487 1.2e-26
TIGR_CMR|GSU_2834122 GSU_2834 "ribosomal protein S1 0.704 0.975 0.487 1.2e-26
TAIR|locus:2145618 EMB3137 "EMBRYO DEFECTIVE 3137" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 679 (244.1 bits), Expect = 8.2e-67, P = 8.2e-67
 Identities = 130/169 (76%), Positives = 147/169 (86%)

Query:     1 MVQTLAMPVAPALSVICNGHNNNLLTNASLSFPVSKQPQYPGLSIQCARVGGVEIPNNKR 60
             M Q +AMPVA +LS+ICN   +N L+  +L+ P S  P    LSI+CARVGGVEIP NKR
Sbjct:     1 MAQMVAMPVAHSLSLICNWAKSNPLSRNTLALPASNTPNKQSLSIRCARVGGVEIPANKR 60

Query:    61 IEYSLQYIHGVGRTRARQILVDLKMENKITKDMSEEELITIRDEVSKYMIEGDLRRFNAL 120
             IEYSLQYIHG+GRTRARQILVDL+MENKITKDM+EEELI +RDEVSKYMIEGDLRRFNAL
Sbjct:    61 IEYSLQYIHGIGRTRARQILVDLQMENKITKDMAEEELIILRDEVSKYMIEGDLRRFNAL 120

Query:   121 AIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKKAPR 169
             AI+RLKEIQCYRG+RHIQGLPCRGQ TKNNCRTLKGK++AIAGKKK  +
Sbjct:   121 AIKRLKEIQCYRGVRHIQGLPCRGQRTKNNCRTLKGKKIAIAGKKKVSK 169
GO:0003676 "nucleic acid binding" evidence=IEA
GO:0003723 "RNA binding" evidence=IEA
GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS
GO:0005622 "intracellular" evidence=IEA
GO:0005840 "ribosome" evidence=IEA
GO:0006412 "translation" evidence=IEA;ISS
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0015935 "small ribosomal subunit" evidence=ISS
GO:0042254 "ribosome biogenesis" evidence=IBA
GO:0009941 "chloroplast envelope" evidence=IDA
GO:0009570 "chloroplast stroma" evidence=IDA
GO:0006354 "DNA-dependent transcription, elongation" evidence=RCA
GO:0009773 "photosynthetic electron transport in photosystem I" evidence=RCA
GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA
GO:0019684 "photosynthesis, light reaction" evidence=RCA
GO:0035304 "regulation of protein dephosphorylation" evidence=RCA
UNIPROTKB|Q0DPA4 Os03g0704000 "Os03g0704000 protein" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|A8JDP6 PRPS13 "Plastid ribosomal protein S13" [Chlamydomonas reinhardtii (taxid:3055)] Back     alignment and assigned GO terms
TAIR|locus:2203216 AT1G77750 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|P20282 rpsM "30S ribosomal protein S13" [Bacillus subtilis subsp. subtilis str. 168 (taxid:224308)] Back     alignment and assigned GO terms
TIGR_CMR|BA_0135 BA_0135 "ribosomal protein S13" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
UNIPROTKB|O66486 rpsM "30S ribosomal protein S13" [Aquifex aeolicus VF5 (taxid:224324)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_2284 CHY_2284 "ribosomal protein S13" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
UNIPROTKB|Q749B0 rpsM "30S ribosomal protein S13" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_2834 GSU_2834 "ribosomal protein S13" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
C5D3U2RS13_GEOSWNo assigned EC number0.53330.70410.9834yesno
Q6KI31RS13_MYCMONo assigned EC number0.53330.70410.9754yesno
Q03IH5RS13_STRTDNo assigned EC number0.52890.71000.9917yesno
A9NEF8RS13_ACHLINo assigned EC number0.50800.72780.9919yesno
P42732RR13_ARATHNo assigned EC number0.77920.91120.9112yesno
Q8ETW0RS13_OCEIHNo assigned EC number0.53710.71000.9917yesno
B2GDU5RS13_LACF3No assigned EC number0.52890.71000.9917yesno
Q6AD19RS13_LEIXXNo assigned EC number0.52030.71590.9758yesno
O50632RS13_BACHDNo assigned EC number0.54540.71000.9917yesno
Q7NQH4RS13_CHRVONo assigned EC number0.51260.69820.9833yesno
Q9RDV8RS13_MYCGANo assigned EC number0.550.70410.9596yesno
Q5LXT5RS13_STRT1No assigned EC number0.52890.71000.9917yesno
B7GJ92RS13_ANOFWNo assigned EC number0.5250.70410.9834yesno
B1HMV7RS13_LYSSCNo assigned EC number0.51230.71000.9917yesno
Q5M2D7RS13_STRT2No assigned EC number0.52890.71000.9917yesno
B0RZT3RS13_FINM2No assigned EC number0.54460.65680.9568yesno
Q65P81RS13_BACLDNo assigned EC number0.55370.71000.9917yesno
B3PMM3RS13_MYCA5No assigned EC number0.59660.69820.9672yesno
A8F9B0RS13_BACP2No assigned EC number0.52890.71000.9917yesno
Q03EE0RS13_PEDPANo assigned EC number0.52890.71000.9917yesno
A5FN18RS13_FLAJ1No assigned EC number0.52840.72180.9838yesno
Q6MSP7RS13_MYCMSNo assigned EC number0.52060.71000.9917yesno
B7J4A1RS13_ACIF2No assigned EC number0.55850.63900.9152yesno
A0PXX2RS13_CLONNNo assigned EC number0.550.69820.9593yesno
B7GNB6RS13_BIFLSNo assigned EC number0.54030.72180.976yesno
A1A093RS13_BIFAANo assigned EC number0.54030.72180.976yesno
A5FZU3RS13_ACICJNo assigned EC number0.53220.72180.976yesno
C0M7C5RS13_STRE4No assigned EC number0.52890.71000.9917yesno
A9B434RS13_HERA2No assigned EC number0.5280.72180.9606yesno
Q03PY1RS13_LACBANo assigned EC number0.52100.69820.9752yesno
B4U524RS13_STREMNo assigned EC number0.52890.71000.9917yesno
B5EM96RS13_ACIF5No assigned EC number0.55850.63900.9152yesno
A7Z0R3RS13_BACA2No assigned EC number0.52890.71000.9917yesno
A5IYW1RS13_MYCAPNo assigned EC number0.54620.69820.9593yesno
P20282RS13_BACSUNo assigned EC number0.53710.71000.9917yesno
B1YGX5RS13_EXIS2No assigned EC number0.53330.70410.9834yesno
B3DQD8RS13_BIFLDNo assigned EC number0.54030.72180.976yesno
A6GZ76RS13_FLAPJNo assigned EC number0.52840.72180.9838yesno
Q8G3Z5RS13_BIFLONo assigned EC number0.54030.72180.976yesno
Q2SRH7RS13_MYCCTNo assigned EC number0.52060.71000.9917yesno
Q8EUD6RS13_MYCPENo assigned EC number0.57140.69820.9516yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pm.C_LG_II0402
SubName- Full=Putative uncharacterized protein; (168 aa)
(Populus trichocarpa)
Predicted Functional Partners:
gw1.IV.3048.1
SubName- Full=Putative uncharacterized protein; (227 aa)
• ••• • 0.985
gw1.16155.2.1
Predicted protein (206 aa)
•  •• • 0.979
gw1.II.2942.1
SubName- Full=Putative uncharacterized protein; (218 aa)
• ••• • 0.969
eugene3.00141000
hypothetical protein (227 aa)
•  •  • 0.968
rps8
RecName- Full=30S ribosomal protein S8, chloroplastic;; One of the primary rRNA binding protein [...] (134 aa)
•  •• • 0.966
gw1.8701.6.1
Predicted protein (100 aa)
•  •• • 0.952
gw1.XIX.1275.1
annotation not avaliable (106 aa)
•  •• • 0.951
rpl22
50S ribosomal protein L22 ; This protein binds specifically to 23S rRNA (By similarity) (129 aa)
• ••  • 0.950
fgenesh4_pm.C_LG_XIII000297
hypothetical protein (222 aa)
•  •  • 0.949
estExt_fgenesh4_pm.C_LG_XIV0141
hypothetical protein (262 aa)
• ••  • 0.931

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query169
PRK05179122 PRK05179, rpsM, 30S ribosomal protein S13; Validat 2e-58
COG0099121 COG0099, RpsM, Ribosomal protein S13 [Translation, 2e-50
TIGR03631113 TIGR03631, bact_S13, 30S ribosomal protein S13 3e-50
pfam00416106 pfam00416, Ribosomal_S13, Ribosomal protein S13/S1 5e-47
CHL00137122 CHL00137, rps13, ribosomal protein S13; Validated 5e-41
PRK04053149 PRK04053, rps13p, 30S ribosomal protein S13P; Revi 2e-17
TIGR03629144 TIGR03629, arch_S13P, archaeal ribosomal protein S 8e-17
PTZ00134154 PTZ00134, PTZ00134, 40S ribosomal protein S18; Pro 3e-08
>gnl|CDD|235358 PRK05179, rpsM, 30S ribosomal protein S13; Validated Back     alignment and domain information 
 Score =  177 bits (452), Expect = 2e-58
 Identities = 66/121 (54%), Positives = 88/121 (72%), Gaps = 2/121 (1%)

Query: 48  ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEVS 106
           AR+ GV+IP NKR+  +L YI+G+GRTRA++IL    +  +   KD+++EEL  IR+E+ 
Sbjct: 2   ARIAGVDIPRNKRVVIALTYIYGIGRTRAKEILAAAGIDPDTRVKDLTDEELDKIREEID 61

Query: 107 K-YMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKK 165
           K Y +EGDLRR  ++ I+RL +I CYRG+RH +GLP RGQ TK N RT KG R  IAGKK
Sbjct: 62  KNYKVEGDLRREVSMNIKRLMDIGCYRGLRHRRGLPVRGQRTKTNARTRKGPRKTIAGKK 121

Query: 166 K 166
           K
Sbjct: 122 K 122

Length = 122
>gnl|CDD|223177 COG0099, RpsM, Ribosomal protein S13 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|213840 TIGR03631, bact_S13, 30S ribosomal protein S13 Back     alignment and domain information
>gnl|CDD|144128 pfam00416, Ribosomal_S13, Ribosomal protein S13/S18 Back     alignment and domain information
>gnl|CDD|177059 CHL00137, rps13, ribosomal protein S13; Validated Back     alignment and domain information
>gnl|CDD|235215 PRK04053, rps13p, 30S ribosomal protein S13P; Reviewed Back     alignment and domain information
>gnl|CDD|213839 TIGR03629, arch_S13P, archaeal ribosomal protein S13P Back     alignment and domain information
>gnl|CDD|185469 PTZ00134, PTZ00134, 40S ribosomal protein S18; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 169
COG0099121 RpsM Ribosomal protein S13 [Translation, ribosomal 100.0
CHL00137122 rps13 ribosomal protein S13; Validated 100.0
PRK05179122 rpsM 30S ribosomal protein S13; Validated 100.0
TIGR03629144 arch_S13P archaeal ribosomal protein S13P. This mo 100.0
PTZ00134154 40S ribosomal protein S18; Provisional 100.0
PRK04053149 rps13p 30S ribosomal protein S13P; Reviewed 100.0
TIGR03631113 bact_S13 30S ribosomal protein S13. This model des 100.0
PF00416107 Ribosomal_S13: Ribosomal protein S13/S18; InterPro 100.0
KOG3311152 consensus Ribosomal protein S18 [Translation, ribo 100.0
PRK01103274 formamidopyrimidine/5-formyluracil/ 5-hydroxymethy 94.34
PF0683192 H2TH: Formamidopyrimidine-DNA glycosylase H2TH dom 94.24
PRK14810272 formamidopyrimidine-DNA glycosylase; Provisional 92.13
PF0063330 HHH: Helix-hairpin-helix motif; InterPro: IPR00044 92.1
PRK14811269 formamidopyrimidine-DNA glycosylase; Provisional 91.42
PRK10445263 endonuclease VIII; Provisional 91.07
TIGR00577272 fpg formamidopyrimidine-DNA glycosylase (fpg). All 90.56
PRK13945282 formamidopyrimidine-DNA glycosylase; Provisional 90.43
PF1179832 IMS_HHH: IMS family HHH motif; InterPro: IPR024728 88.17
PRK04184 535 DNA topoisomerase VI subunit B; Validated 86.49
KOG3311152 consensus Ribosomal protein S18 [Translation, ribo 85.53
PF05833 455 FbpA: Fibronectin-binding protein A N-terminus (Fb 84.93
PRK02515132 psbU photosystem II complex extrinsic protein prec 84.5
COG3743133 Uncharacterized conserved protein [Function unknow 83.57
smart0027826 HhH1 Helix-hairpin-helix DNA-binding motif class 1 81.65
PF1452060 HHH_5: Helix-hairpin-helix domain; PDB: 3AUO_B 3AU 81.27
PF1303561 DUF3896: Protein of unknown function (DUF3896) 80.64
>COG0099 RpsM Ribosomal protein S13 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information 
Probab=100.00  E-value=3.7e-51  Score=313.78  Aligned_cols=119  Identities=50%  Similarity=0.863  Sum_probs=116.3

Q ss_pred             eeEEeCccCCCCeEEeEeeccccccCHHHHHHHHHHcCCC-ccccCCCCHHHHHHHHHHHh-hcccchHHHHHHHHHHHH
Q 030930           47 CARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKME-NKITKDMSEEELITIRDEVS-KYMIEGDLRRFNALAIRR  124 (169)
Q Consensus        47 ~vrI~~tni~~~K~i~~ALt~I~GIG~~~A~~Ic~~lgi~-~k~~~~Ls~~el~~L~~~l~-~~~Ie~dLr~~~~~nI~r  124 (169)
                      |+||+|+|||++|+|++|||+|||||+++|..||+++||| +++++||||||+++|.++++ .|++|+||++++++||+|
T Consensus         1 maRIagvdip~~K~v~iALt~IyGIG~~~a~~I~~~~gi~~~~r~~eLteeei~~ir~~i~~~~~vegDLr~~v~~dIkR   80 (121)
T COG0099           1 MARIAGVDIPGNKRVVIALTYIYGIGRRRAKEICKKAGIDPDKRVGELTEEEIERLRDAIQNKYLVEGDLRREVRMDIKR   80 (121)
T ss_pred             CceecccCCCCCceEeehhhhhccccHHHHHHHHHHcCCCHhHhhccCCHHHHHHHHHHHHhcCeehhHHHHHHHHHHHH
Confidence            6999999999999999999999999999999999999999 77899999999999999998 899999999999999999


Q ss_pred             HHhhhhcccCccCCCCccCCccCccccccCCCceeeecccc
Q 030930          125 LKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKK  165 (169)
Q Consensus       125 L~~I~sYRG~RH~~GLPVRGQRTrTNarT~Kg~~~gV~~kK  165 (169)
                      |++|+||||+||.+|||||||||||||||+||.+++|++||
T Consensus        81 l~~i~~YRGiRH~~GLpVRGQrTktnaRtrkG~~~~v~~KK  121 (121)
T COG0099          81 LMKIGCYRGIRHRRGLPVRGQRTKTNARTRKGPRKGVAKKK  121 (121)
T ss_pred             HHHhhhhhhhhhhcCCCCCCcccCccccccCCCccccccCC
Confidence            99999999999999999999999999999999999998876

>CHL00137 rps13 ribosomal protein S13; Validated Back     alignment and domain information
>PRK05179 rpsM 30S ribosomal protein S13; Validated Back     alignment and domain information
>TIGR03629 arch_S13P archaeal ribosomal protein S13P Back     alignment and domain information
>PTZ00134 40S ribosomal protein S18; Provisional Back     alignment and domain information
>PRK04053 rps13p 30S ribosomal protein S13P; Reviewed Back     alignment and domain information
>TIGR03631 bact_S13 30S ribosomal protein S13 Back     alignment and domain information
>PF00416 Ribosomal_S13: Ribosomal protein S13/S18; InterPro: IPR001892 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>KOG3311 consensus Ribosomal protein S18 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK01103 formamidopyrimidine/5-formyluracil/ 5-hydroxymethyluracil DNA glycosylase; Validated Back     alignment and domain information
>PF06831 H2TH: Formamidopyrimidine-DNA glycosylase H2TH domain; InterPro: IPR015886 This entry represents a helix-2turn-helix DNA-binding domain found in DNA glycosylase/AP lyase enzymes, which are involved in base excision repair of DNA damaged by oxidation or by mutagenic agents Back     alignment and domain information
>PRK14810 formamidopyrimidine-DNA glycosylase; Provisional Back     alignment and domain information
>PF00633 HHH: Helix-hairpin-helix motif; InterPro: IPR000445 The HhH motif is an around 20 amino acids domain present in prokaryotic and eukaryotic non-sequence-specific DNA binding proteins [, , ] Back     alignment and domain information
>PRK14811 formamidopyrimidine-DNA glycosylase; Provisional Back     alignment and domain information
>PRK10445 endonuclease VIII; Provisional Back     alignment and domain information
>TIGR00577 fpg formamidopyrimidine-DNA glycosylase (fpg) Back     alignment and domain information
>PRK13945 formamidopyrimidine-DNA glycosylase; Provisional Back     alignment and domain information
>PF11798 IMS_HHH: IMS family HHH motif; InterPro: IPR024728 This helix-hairpin-helix motif is found in proteins belonging to the type-Y family of DNA polymerases [] Back     alignment and domain information
>PRK04184 DNA topoisomerase VI subunit B; Validated Back     alignment and domain information
>KOG3311 consensus Ribosomal protein S18 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF05833 FbpA: Fibronectin-binding protein A N-terminus (FbpA); InterPro: IPR008616 This family consists of the N-terminal region of the prokaryotic fibronectin-binding protein, the C-terminal region is IPR008532 from INTERPRO Back     alignment and domain information
>PRK02515 psbU photosystem II complex extrinsic protein precursor U; Provisional Back     alignment and domain information
>COG3743 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>smart00278 HhH1 Helix-hairpin-helix DNA-binding motif class 1 Back     alignment and domain information
>PF14520 HHH_5: Helix-hairpin-helix domain; PDB: 3AUO_B 3AU6_A 3AU2_A 3B0X_A 3B0Y_A 1SZP_C 3LDA_A 1WCN_A 2JZB_B 2ZTC_A Back     alignment and domain information
>PF13035 DUF3896: Protein of unknown function (DUF3896) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query169
3bbn_M145 Homology Model For The Spinach Chloroplast 30s Subu 1e-42
1fjg_M126 Structure Of The Thermus Thermophilus 30s Ribosomal 2e-27
1i94_M125 Crystal Structures Of The Small Ribosomal Subunit W 2e-27
3ofo_M114 Crystal Structure Of The E. Coli Ribosome Bound To 4e-25
2gy9_M115 Structure Of The 30s Subunit Of A Pre-Translocation 5e-25
1vs5_M118 Crystal Structure Of The Bacterial Ribosome From Es 5e-25
1p6g_M117 Real Space Refined Coordinates Of The 30s Subunit F 5e-25
3fih_M113 Ternary Complex-Bound E.Coli 70s Ribosome. This Ent 5e-25
3mr8_M117 Recognition Of The Amber Stop Codon By Release Fact 2e-23
3pyn_M116 Crystal Structure Of A Complex Containing Domain 3 8e-23
3j20_O148 Promiscuous Behavior Of Proteins In Archaeal Riboso 8e-08
2zkq_m152 Structure Of A Mammalian Ribosomal 40s Subunit With 4e-07
3izb_M146 Localization Of The Small Subunit Ribosomal Protein 4e-06
1s1h_M132 Structure Of The Ribosomal 80s-Eef2-Sordarin Comple 8e-06
3jyv_M130 Structure Of The 40s Rrna And Proteins And PE TRNA 9e-06
3iz6_M152 Localization Of The Small Subunit Ribosomal Protein 9e-05
2xzm_M155 Crystal Structure Of The Eukaryotic 40s Ribosomal S 2e-04
>pdb|3BBN|M Chain M, Homology Model For The Spinach Chloroplast 30s Subunit Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome Length = 145 Back     alignment and structure 
Iteration: 1

 Score =  168 bits (426), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 82/132 (62%), Positives = 103/132 (78%), Gaps = 12/132 (9%)
Query: 27  NASLSFPVSKQPQ--YPGLSIQCARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLK 84
           ++S+SFP  K+    + GL I+C R+GGVEIPN+KR+EYSLQYIHG+GR+R+RQIL+DL 
Sbjct: 24  SSSVSFPAPKKGGIGHGGLQIECIRIGGVEIPNHKRVEYSLQYIHGIGRSRSRQILLDLN 83
Query: 85  MENKITKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRG 144
            +NK+TKD+SEEE+I +R E          +RFN +AI RLKEI+CYRGIRH  GLP RG
Sbjct: 84  FDNKVTKDLSEEEVIILRKE----------KRFNRVAIERLKEIRCYRGIRHKLGLPVRG 133
Query: 145 QHTKNNCRTLKG 156
           Q TKNNCRTLKG
Sbjct: 134 QRTKNNCRTLKG 145
>pdb|1FJG|M Chain M, Structure Of The Thermus Thermophilus 30s Ribosomal Subunit In Complex With The Antibiotics Streptomycin, Spectinomycin, And Paromomycin Length = 126 Back     alignment and structure
>pdb|1I94|M Chain M, Crystal Structures Of The Small Ribosomal Subunit With Tetracycline, Edeine And If3 Length = 125 Back     alignment and structure
>pdb|3OFO|M Chain M, Crystal Structure Of The E. Coli Ribosome Bound To Erythromycin. This File Contains The 30s Subunit Of The First 70s Ribosome. Length = 114 Back     alignment and structure
>pdb|2GY9|M Chain M, Structure Of The 30s Subunit Of A Pre-Translocational E. Coli Ribosome Obtained By Fitting Atomic Models For Rna And Protein Components Into Cryo-Em Map Emd-1056 Length = 115 Back     alignment and structure
>pdb|1VS5|M Chain M, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With The Antibiotic Kasugamyin At 3.5a Resolution. This File Contains The 30s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. Length = 118 Back     alignment and structure
>pdb|1P6G|M Chain M, Real Space Refined Coordinates Of The 30s Subunit Fitted Into The Low Resolution Cryo-Em Map Of The Ef-G.Gtp State Of E. Coli 70s Ribosome Length = 117 Back     alignment and structure
>pdb|3FIH|M Chain M, Ternary Complex-Bound E.Coli 70s Ribosome. This Entry Consists Of The 30s Subunit, Trnas And The Ternary Complex. Length = 113 Back     alignment and structure
>pdb|3MR8|M Chain M, Recognition Of The Amber Stop Codon By Release Factor Rf1. This Entry 3mr8 Contains 30s Ribosomal Subunit. The 50s Ribosomal Subunit Can Be Found In Pdb Entry 3ms1. Molecule B In The Same Asymmetric Unit Is Deposited As 3mrz (50s) And 3ms0 (30s). Length = 117 Back     alignment and structure
>pdb|3PYN|M Chain M, Crystal Structure Of A Complex Containing Domain 3 From The Psiv Igr Ires Rna Bound To The 70s Ribosome. This File Contains The 30s Subunit Of The First 70s Ribosome. Length = 116 Back     alignment and structure
>pdb|3J20|O Chain O, Promiscuous Behavior Of Proteins In Archaeal Ribosomes Revealed By Cryo-em: Implications For Evolution Of Eukaryotic Ribosomes (30s Ribosomal Subunit) Length = 148 Back     alignment and structure
>pdb|2ZKQ|MM Chain m, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 152 Back     alignment and structure
>pdb|3IZB|M Chain M, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 146 Back     alignment and structure
>pdb|1S1H|M Chain M, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From Yeast Obtained By Docking Atomic Models For Rna And Protein Components Into A 11.7 A Cryo-Em Map. This File, 1s1h, Contains 40s Subunit. The 60s Ribosomal Subunit Is In File 1s1i Length = 132 Back     alignment and structure
>pdb|3JYV|M Chain M, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 130 Back     alignment and structure
>pdb|3IZ6|M Chain M, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 152 Back     alignment and structure
>pdb|2XZM|M Chain M, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 155 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query169
2vqe_M126 30S ribosomal protein S13, 30S ribosomal protein S 4e-65
3r8n_M114 30S ribosomal protein S13; protein biosynthesis, R 4e-61
3bbn_M145 Ribosomal protein S13; small ribosomal subunit, sp 7e-59
2xzm_M155 RPS18E; ribosome, translation; 3.93A {Tetrahymena 1e-41
3iz6_M152 40S ribosomal protein S18 (S13P); eukaryotic ribos 4e-41
3u5c_S146 40S ribosomal protein S18-A, 40S ribosomal protein 1e-38
>2vqe_M 30S ribosomal protein S13, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: a.156.1.1 PDB: 1gix_P* 1hnw_M* 1hnx_M* 1hnz_M* 1hr0_M 1ibk_M* 1ibl_M* 1ibm_M 1j5e_M 1jgo_P* 1jgp_P* 1jgq_P* 1mj1_P* 1ml5_P* 1n32_M* 1n33_M* 1n34_M 1n36_M 1xmo_M* 1xmq_M* ... Length = 126 Back     alignment and structure
 Score =  194 bits (495), Expect = 4e-65
 Identities = 60/124 (48%), Positives = 85/124 (68%), Gaps = 2/124 (1%)

Query: 48  ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEVS 106
           AR+ GVEIP NKR++ +L YI+G+G+ RA++ L    +      KD++E E++ +R+ V 
Sbjct: 2   ARIAGVEIPRNKRVDVALTYIYGIGKARAKEALEKTGINPATRVKDLTEAEVVRLREYVE 61

Query: 107 K-YMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKK 165
             + +EG+LR   A  I+RL +I CYRG+RH +GLP RGQ T+ N RT KG R  +AGKK
Sbjct: 62  NTWKLEGELRAEVAANIKRLMDIGCYRGLRHRRGLPVRGQRTRTNARTRKGPRKTVAGKK 121

Query: 166 KAPR 169
           KAPR
Sbjct: 122 KAPR 125
>3bbn_M Ribosomal protein S13; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Length = 145 Back     alignment and structure
>2xzm_M RPS18E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_M Length = 155 Back     alignment and structure
>3iz6_M 40S ribosomal protein S18 (S13P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Length = 152 Back     alignment and structure
>3u5c_S 40S ribosomal protein S18-A, 40S ribosomal protein S17-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_M 3o30_L 3o2z_L 3u5g_S 1s1h_M 3jyv_M* 2zkq_m Length = 146 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query169
2xzm_M155 RPS18E; ribosome, translation; 3.93A {Tetrahymena 100.0
3bbn_M145 Ribosomal protein S13; small ribosomal subunit, sp 100.0
2vqe_M126 30S ribosomal protein S13, 30S ribosomal protein S 100.0
3iz6_M152 40S ribosomal protein S18 (S13P); eukaryotic ribos 100.0
3j20_O148 30S ribosomal protein S13P; archaea, archaeal, KIN 100.0
3u5c_S146 40S ribosomal protein S18-A, 40S ribosomal protein 100.0
3r8n_M114 30S ribosomal protein S13; protein biosynthesis, R 100.0
2a1j_A63 DNA repair endonuclease XPF; XPF, xeroderma pigmen 92.06
3w0f_A287 Endonuclease 8-like 3; helix two turns helix, zinc 90.4
1k3x_A262 Endonuclease VIII; hydrolase/DNA, hydrolase-DNA co 90.39
3u6p_A273 Formamidopyrimidine-DNA glycosylase; DNA glycosyla 90.21
1ee8_A266 MUTM (FPG) protein; beta sandwich, zinc finger, he 89.29
2xzf_A271 Formamidopyrimidine-DNA glycosylase; hydrolase-DNA 89.16
1k82_A268 Formamidopyrimidine-DNA glycosylase; protein-DNA c 89.14
3vk8_A295 Probable formamidopyrimidine-DNA glycosylase; DNA 88.91
3twl_A310 Formamidopyrimidine-DNA glycosylase 1; helix two t 88.59
1kft_A78 UVRC, excinuclease ABC subunit C; helix-hairpin-he 88.03
3arc_U97 Photosystem II 12 kDa extrinsic protein; PSII, mem 87.02
2a1j_B91 DNA excision repair protein ERCC-1; XPF, xeroderma 85.97
1z00_B84 DNA repair endonuclease XPF; helix-hairpin-helix, 85.38
1mu5_A 471 Type II DNA topoisomerase VI subunit B; GHKL ATPas 84.44
1s5l_U134 Photosystem II 12 kDa extrinsic protein; photosynt 82.37
>2xzm_M RPS18E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_M Back     alignment and structure
Probab=100.00  E-value=3.6e-52  Score=331.21  Aligned_cols=131  Identities=31%  Similarity=0.431  Sum_probs=122.1

Q ss_pred             cccccCCCCCCCCcccceeEEeCccCCCCeEEeEeeccccccCHHHHHHHHHHcCCC-ccccCCCCHHHHHHHHHHHhh-
Q 030930           30 LSFPVSKQPQYPGLSIQCARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKME-NKITKDMSEEELITIRDEVSK-  107 (169)
Q Consensus        30 ~~~~~~~~~~f~~i~~~~vrI~~tni~~~K~i~~ALt~I~GIG~~~A~~Ic~~lgi~-~k~~~~Ls~~el~~L~~~l~~-  107 (169)
                      ||+..++.++||||    +||+|||||++|+|.+|||+|||||+++|+.||+++||| ++++++|||+|+++|.++|++ 
T Consensus         1 m~~~~~~~~~f~~m----~RI~g~~l~~~k~v~~aLt~I~GIG~~~A~~I~~~~gid~~~r~~~Lt~~ei~~l~~~i~~p   76 (155)
T 2xzm_M            1 MSFVIEKESDFKYI----HRILNTNIDGKRITPIALTGIRGIGRRFAYIICKVLKIDPNARAGLLTEDQCNKITDLIADP   76 (155)
T ss_dssp             CCCCSSTTTSSCSC----CEETTTEECCSSCHHHHHTTSTTCCHHHHHHHHHHTTCCSSSCSSCSCHHHHHHHHHHHHSH
T ss_pred             CCccccchHhhhhh----HheeCccCCCCCEEEEeeecccccCHHHHHHHHHHcCCCcccccccCCHHHHHHHHHHHhCc
Confidence            34444344489999    999999999999999999999999999999999999999 778999999999999999986 


Q ss_pred             ----------------------cccchHHHHHHHHHHHHHHhhhhcccCccCCCCccCCccCccccccCCCceeeecccc
Q 030930          108 ----------------------YMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKK  165 (169)
Q Consensus       108 ----------------------~~Ie~dLr~~~~~nI~rL~~I~sYRG~RH~~GLPVRGQRTrTNarT~Kg~~~gV~~kK  165 (169)
                                            |.+|+||++++++||+||++|+||||+||.+|||||||||||||||  |++|||++||
T Consensus        77 ~~~~iP~w~lNr~kD~~~G~~~~~ie~dLr~~~~~dI~Rl~~I~~yRG~RH~~GLpVRGQRTkTnaRt--g~tvGv~kkk  154 (155)
T 2xzm_M           77 EAHGIPTWLLNRINDFKDGKNYQMASNTLDTKMREDLERLKKIKSHRGLRHFWGLKVRGQHTKTSGRH--GVVCGVVRKN  154 (155)
T ss_dssp             HHHCCCGGGCSEEEETTTEEEECCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHTCCSSSCCCSSSSCS--SCCCSSCCCC
T ss_pred             cccCCCHHHhhcccccCCCceeEEecHHHHHHHHHhHHHHhhhceeeeeecccCCCcCCcCCccCCCC--cccccccccC
Confidence                                  7899999999999999999999999999999999999999999999  8899999998


Q ss_pred             C
Q 030930          166 K  166 (169)
Q Consensus       166 ~  166 (169)
                      |
T Consensus       155 ~  155 (155)
T 2xzm_M          155 K  155 (155)
T ss_dssp             -
T ss_pred             C
Confidence            6
>3bbn_M Ribosomal protein S13; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Back     alignment and structure
>2vqe_M 30S ribosomal protein S13, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: a.156.1.1 PDB: 1gix_P* 1hnw_M* 1hnx_M* 1hnz_M* 1hr0_M 1ibk_M* 1ibl_M* 1ibm_M 1j5e_M 1jgo_P* 1jgp_P* 1jgq_P* 1mj1_P* 1ml5_P* 1n32_M* 1n33_M* 1n34_M 1n36_M 1xmo_M* 1xmq_M* ... Back     alignment and structure
>3iz6_M 40S ribosomal protein S18 (S13P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Back     alignment and structure
>3j20_O 30S ribosomal protein S13P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} Back     alignment and structure
>3u5c_S 40S ribosomal protein S18-A, 40S ribosomal protein S17-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_M 3o30_L 3o2z_L 3u5g_S 1s1h_M 3jyv_M* 2zkq_m Back     alignment and structure
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A* Back     alignment and structure
>3w0f_A Endonuclease 8-like 3; helix two turns helix, zinc finger, DNA binding, hydrolase; 2.00A {Mus musculus} Back     alignment and structure
>1k3x_A Endonuclease VIII; hydrolase/DNA, hydrolase-DNA complex; HET: BRU PED; 1.25A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 PDB: 1k3w_A* 1q39_A 2ea0_A* 2oq4_A* 1q3c_A 2opf_A* 1q3b_A* Back     alignment and structure
>3u6p_A Formamidopyrimidine-DNA glycosylase; DNA glycosylase, DNA repair, sequence context; HET: DNA 08Q; 1.60A {Geobacillus stearothermophilus} PDB: 3u6d_A* 3u6c_A* 3u6l_A* 3u6m_A* 3u6o_A* 3u6e_A* 3u6q_A* 3u6s_A* 3gp1_A* 3sbj_A* 2f5q_A* 2f5s_A* 3gq4_A* 3gpy_A* 2f5n_A 2f5o_A 2f5p_A 3sau_A* 3sar_A* 3sav_A* ... Back     alignment and structure
>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns helix, riken STR genomics/proteomics initiative, RSGI, structural genomics; 1.90A {Thermus thermophilus} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 Back     alignment and structure
>2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET: VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A* 1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A 1pjj_A* Back     alignment and structure
>1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex, DNA repair, beta sandwich, zinc finger, helix two-turns helix, hydrolase/DNA complex; HET: PED; 2.10A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 Back     alignment and structure
>3vk8_A Probable formamidopyrimidine-DNA glycosylase; DNA glycosylase, hneil1 ortholog, DNA lesion, thymine glycol zincless finger; HET: DNA CTG; 2.00A {Acanthamoeba polyphaga mimivirus} PDB: 3vk7_A* 3a42_A 3a46_A* 3a45_A* Back     alignment and structure
>3twl_A Formamidopyrimidine-DNA glycosylase 1; helix two turns helix, zinc-LESS finger, hydrolase, DNA DAMA repair, DNA-binding, glycosidase, lyase; 1.70A {Arabidopsis thaliana} PDB: 3twm_A* 3twk_A Back     alignment and structure
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3 Back     alignment and structure
>3arc_U Photosystem II 12 kDa extrinsic protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_U* 2axt_U* 3bz2_U* 3kzi_U* 3prq_U* 3prr_U* 3a0b_U* 3a0h_U* Back     alignment and structure
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 Back     alignment and structure
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A* Back     alignment and structure
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A* Back     alignment and structure
>1s5l_U Photosystem II 12 kDa extrinsic protein; photosynthesis, oxygen-evolving, tetra- manganese, membrane; HET: CL1 PHO HEM PL9 LMT BCR; 3.50A {Thermosynechococcus elongatus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 169
d2uubm1125 a.156.1.1 (M:2-126) Ribosomal protein S13 {Thermus 6e-46
d2gy9m1114 a.156.1.1 (M:1-114) Ribosomal protein S13 {Escheri 7e-42
>d2uubm1 a.156.1.1 (M:2-126) Ribosomal protein S13 {Thermus thermophilus [TaxId: 274]} Length = 125 Back     information, alignment and structure

class: All alpha proteins
fold: S13-like H2TH domain
superfamily: S13-like H2TH domain
family: Ribosomal protein S13
domain: Ribosomal protein S13
species: Thermus thermophilus [TaxId: 274]

 Score =  144 bits (365), Expect = 6e-46
 Identities = 60/124 (48%), Positives = 85/124 (68%), Gaps = 2/124 (1%)

Query: 48  ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKME-NKITKDMSEEELITIRDEVS 106
           AR+ GVEIP NKR++ +L YI+G+G+ RA++ L    +      KD++E E++ +R+ V 
Sbjct: 1   ARIAGVEIPRNKRVDVALTYIYGIGKARAKEALEKTGINPATRVKDLTEAEVVRLREYVE 60

Query: 107 -KYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKK 165
             + +EG+LR   A  I+RL +I CYRG+RH +GLP RGQ T+ N RT KG R  +AGKK
Sbjct: 61  NTWKLEGELRAEVAANIKRLMDIGCYRGLRHRRGLPVRGQRTRTNARTRKGPRKTVAGKK 120

Query: 166 KAPR 169
           KAPR
Sbjct: 121 KAPR 124
>d2gy9m1 a.156.1.1 (M:1-114) Ribosomal protein S13 {Escherichia coli [TaxId: 562]} Length = 114 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query169
d2uubm1125 Ribosomal protein S13 {Thermus thermophilus [TaxId 100.0
d2gy9m1114 Ribosomal protein S13 {Escherichia coli [TaxId: 56 100.0
d2hkja178 Topoisomerase VI-B subunit middle domain {Archaeon 97.36
d1ee8a189 DNA repair protein MutM (Fpg) {Thermus thermophilu 95.53
d1tdza188 DNA repair protein MutM (Fpg) {Lactococcus lactis 95.41
d1k82a188 DNA repair protein MutM (Fpg) {Escherichia coli [T 95.31
d1k3xa189 Endonuclease VIII {Escherichia coli [TaxId: 562]} 95.27
d1r2za194 DNA repair protein MutM (Fpg) {Bacillus stearother 95.09
d2bgwa170 DNA repair endonuclease XPF {Aeropyrum pernix [Tax 94.42
d1pzna161 DNA repair protein Rad51, N-terminal domain {Archa 94.11
d2i1qa160 DNA repair protein Rad51, N-terminal domain {Archa 93.47
d2bcqa257 DNA polymerase lambda {Human (Homo sapiens) [TaxId 92.74
d1kfta_56 Excinuclease UvrC C-terminal domain {Escherichia c 92.63
d2fmpa257 DNA polymerase beta {Human (Homo sapiens) [TaxId: 91.81
d2a1jb178 DNA excision repair protein ERCC-1 {Human (Homo sa 91.65
d2a1ja162 DNA repair endonuclease XPF {Human (Homo sapiens) 90.66
d1jmsa360 Terminal deoxynucleotidyl transferase {Mouse (Mus 90.33
d1x2ia168 ATP-dependent RNA helicase PF2015 {Pyrococcus furi 89.5
d2axtu198 Photosystem II 12 kDa extrinsic protein PsbU {Ther 89.23
d1bvsa271 DNA helicase RuvA subunit, middle domain {Mycobact 89.01
d1ixra173 DNA helicase RuvA subunit, middle domain {Thermus 88.18
d2i0za2169 Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396] 87.51
d1cuka278 DNA helicase RuvA subunit, middle domain {Escheric 86.4
d2gqfa2148 Hypothetical protein HI0933 {Haemophilus influenza 84.9
>d2uubm1 a.156.1.1 (M:2-126) Ribosomal protein S13 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
class: All alpha proteins
fold: S13-like H2TH domain
superfamily: S13-like H2TH domain
family: Ribosomal protein S13
domain: Ribosomal protein S13
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=1.3e-51  Score=315.24  Aligned_cols=122  Identities=49%  Similarity=0.861  Sum_probs=117.9

Q ss_pred             eEEeCccCCCCeEEeEeeccccccCHHHHHHHHHHcCCC-ccccCCCCHHHHHHHHHHHh-hcccchHHHHHHHHHHHHH
Q 030930           48 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKME-NKITKDMSEEELITIRDEVS-KYMIEGDLRRFNALAIRRL  125 (169)
Q Consensus        48 vrI~~tni~~~K~i~~ALt~I~GIG~~~A~~Ic~~lgi~-~k~~~~Ls~~el~~L~~~l~-~~~Ie~dLr~~~~~nI~rL  125 (169)
                      .||+|||||++|+|++|||+|||||+++|.+||+++||| +.++++||++|++.|+++++ +|.+|+||++.+++||+||
T Consensus         1 aRI~g~di~~~K~v~~ALt~I~GIG~~~A~~Ic~~lgId~~~k~~~Lt~~qi~~I~~~i~~~~~i~~~L~~~~~~dIkrl   80 (125)
T d2uubm1           1 ARIAGVEIPRNKRVDVALTYIYGIGKARAKEALEKTGINPATRVKDLTEAEVVRLREYVENTWKLEGELRAEVAANIKRL   80 (125)
T ss_dssp             CCCSTTCCCCSSBHHHHHTTSTTCCHHHHHHHHHTTTCCTTSBGGGCCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHH
T ss_pred             CcccCccCCCCCEEEEeeeeeeCcCHHHHHHHHHHcCCCcccccccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence            489999999999999999999999999999999999999 66789999999999999997 5999999999999999999


Q ss_pred             HhhhhcccCccCCCCccCCccCccccccCCCceeeeccccCCCC
Q 030930          126 KEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKKAPR  169 (169)
Q Consensus       126 ~~I~sYRG~RH~~GLPVRGQRTrTNarT~Kg~~~gV~~kK~~~~  169 (169)
                      ++|+||||+||.+|||||||||||||||+||.++||++||++|+
T Consensus        81 ~~i~~yRG~RH~~gLpvRGQRT~tN~rt~kg~~~~v~~kk~~~~  124 (125)
T d2uubm1          81 MDIGCYRGLRHRRGLPVRGQRTRTNARTRKGPRKTVAGKKKAPR  124 (125)
T ss_dssp             HHTTCHHHHHHHHTCCSSSCCCSSCCHHHHCSCCCCCCCSSSCC
T ss_pred             HHhhhhhhhhhcCCCCCCCCCCCCCccccCCCccccccccCCCC
Confidence            99999999999999999999999999999999999999999875
>d2gy9m1 a.156.1.1 (M:1-114) Ribosomal protein S13 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2hkja1 a.156.1.3 (A:229-306) Topoisomerase VI-B subunit middle domain {Archaeon Sulfolobus shibatae [TaxId: 2286]} Back     information, alignment and structure
>d1ee8a1 a.156.1.2 (A:122-210) DNA repair protein MutM (Fpg) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1tdza1 a.156.1.2 (A:132-219) DNA repair protein MutM (Fpg) {Lactococcus lactis [TaxId: 1358]} Back     information, alignment and structure
>d1k82a1 a.156.1.2 (A:129-216) DNA repair protein MutM (Fpg) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1k3xa1 a.156.1.2 (A:125-213) Endonuclease VIII {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1r2za1 a.156.1.2 (A:135-228) DNA repair protein MutM (Fpg) {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d2bgwa1 a.60.2.5 (A:160-229) DNA repair endonuclease XPF {Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
>d1pzna1 a.60.4.1 (A:35-95) DNA repair protein Rad51, N-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d2i1qa1 a.60.4.1 (A:5-64) DNA repair protein Rad51, N-terminal domain {Archaeon Methanococcus voltae [TaxId: 2188]} Back     information, alignment and structure
>d2bcqa2 a.60.12.1 (A:329-385) DNA polymerase lambda {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1kfta_ a.60.2.3 (A:) Excinuclease UvrC C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2fmpa2 a.60.12.1 (A:92-148) DNA polymerase beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2a1jb1 a.60.2.5 (B:219-296) DNA excision repair protein ERCC-1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2a1ja1 a.60.2.5 (A:837-898) DNA repair endonuclease XPF {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jmsa3 a.60.12.1 (A:243-302) Terminal deoxynucleotidyl transferase {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1x2ia1 a.60.2.5 (A:2-69) ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d2axtu1 a.60.12.2 (U:37-134) Photosystem II 12 kDa extrinsic protein PsbU {Thermosynechococcus elongatus [TaxId: 146786]} Back     information, alignment and structure
>d1bvsa2 a.60.2.1 (A:64-134) DNA helicase RuvA subunit, middle domain {Mycobacterium leprae [TaxId: 1769]} Back     information, alignment and structure
>d1ixra1 a.60.2.1 (A:63-135) DNA helicase RuvA subunit, middle domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2i0za2 e.74.1.1 (A:193-361) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} Back     information, alignment and structure
>d1cuka2 a.60.2.1 (A:65-142) DNA helicase RuvA subunit, middle domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2gqfa2 e.74.1.1 (A:195-342) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure