Citrus Sinensis ID: 030939

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------17
Protein Sequence
MLRGAKVGVSMEAIHVHCHRYCFLRKILSTCNHSKAFNKQTTHCRQKKLSRRKPILLSTSIDRGYLTRTAAGGVPPPPLDLTEDNVRQVIADARGELAQLFDTSVGITGVAELAELDGPFVKIRLRGRFWHKRSTVIARLANYLKQRIPEILEVDIEDEKQLDDSPENF
Secondary Structure (PSIPRED)
ccccccccEEEEEEEEccccHHHHHHHHHHcccccccccccccccccccccccccccccEEcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccEEEEEEcccEEEEEEcccccccHHHHHHHHHHHHHHHcccEEEEEcccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccEEEEEEEEEEEcccHHHHHHHHccccccccccccccccccccccccccccEHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccEEEEEEEEEEcccEEEEEEEccccccHHHHHHHHHHHHHHHcccEEEEEEccHHHcccccHcc
Coil and Loop (DISEMBL)
mlrgakvgvSMEAIHVHCHRYCFLRKILSTCnhskafnkqtthcrqkklsrrkpillstsidrgyltrtaaggvppppldltedNVRQVIADARGELAQLFDTSVGITGVAElaeldgpfvkirlrgrfwHKRSTVIARLANYLKQRIPeilevdiedekqlddspenf
Flexible Loop (DISEMBL)
mlrgakvgvsmeaIHVHCHRYCFLRKILSTCNHSKAfnkqtthcrqkklsrrkpillstsidrgyltrtaaggvppppldlTEDNVRQVIADARGELAQLFDTSVGITGVAelaeldgpfvkirlrgrfwhkrsTVIARLANYLKQripeilevdiedekqlddspenf
Low Complexity Region (SEG)
MLRGAKVGVSMEAIHVHCHRYCFLRKILSTCNHSKAFNKQTTHCRQKKLSRRKPILLSTSIDRGYLTRTAAGGVPPPPLDLTEDNVRQVIADARGELAQLFDTSVGITGVAELAELDGPFVKIRLRGRFWHKRSTVIARLANYLKQRIPEILEVDIEDEKQLDDSPENF
Disordered region (IsUnstruct)
******VGVSMEAIHVHCHRYCFLRKILSTCNHSKAFNKQTTHCRQ*****RKPILLSTSIDRGYLTRTAAGGV****LDLTEDNVRQVIADARGELAQLFDTSVGITGVAELAELDGPFVKIRLRGRFWHKRSTVIARLANYLKQRIPEILEVDI*************
Disordered Region (DISOPRED)
********VSMEAIHVHCHRYCFLRK***********************************************VPPPPLDLTEDNVRQVIADARGELAQLFDTSVGITGVAELAELDGPFVKIRLRGRFWHKRSTVIARLANYLKQRIPEILEVDIEDEKQ********
Disordered Region (DISEMBL)
********VSMEAIHVHCHRYCFLRKILSTCNHSKAF************SRRKPILLSTSIDRGYLTRTAAGGVPPPPLDLTEDNVRQVIADARGELAQLFDTSVGITGVAELAELDGPFVKIRLRGRFWHKRSTVIARLANYLKQRIPEILEVDIEDEKQLDDSPENF
Disordered Region (DISPRO)
*LRGAKVGVSMEAIHVHCHRYCFLRKILSTCNHSKAFNKQTTHCRQKKLSRRKPILLSTSIDRGYLTRTAAGGVPPPPLDLTEDNVRQVIADARGELAQLFDTSVGITGVAELAELDGPFVKIRLRGRFWHKRSTVIARLANYLKQRIPEILEVDIEDEKQLDD*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLRGAKVGVSMEAIHVHCHRYCFLRKILSTCNHSKAFNKQTTHCRQKKLSRRKPILLSTSIDRGYLTRTAAGGVPPPPLDLTEDNVRQVIADARGELAQLFDTSVGITGVAELAELDGPFVKIRLRGRFWHKRSTVIARLANYLKQRIPEILEVDIEDEKQLDDSPENF
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	169
351727260	161	uncharacterized protein LOC100305710 [Gl	0.792	0.832	0.641	4e-44
296085081	120	unnamed protein product [Vitis vinifera]	0.686	0.966	0.762	5e-43
225447436	127	PREDICTED: uncharacterized protein LOC10	0.686	0.913	0.762	5e-43
351727633	159	uncharacterized protein LOC100500460 [Gl	0.633	0.672	0.759	3e-42
388490966	174	unknown [Lotus japonicus]	0.556	0.540	0.829	8e-42
224053471	131	predicted protein [Populus trichocarpa]	0.692	0.893	0.693	2e-41
388521729	158	unknown [Medicago truncatula]	0.852	0.911	0.6	4e-41
297788659	166	hypothetical protein ARALYDRAFT_497470 [	0.940	0.957	0.536	8e-41
358343531	153	hypothetical protein MTR_013s0001 [Medic	0.662	0.732	0.669	2e-40
15225807	166	uncharacterized protein [Arabidopsis tha	0.781	0.795	0.597	6e-38

>gi|351727260|ref|NP_001235619.1| uncharacterized protein LOC100305710 [Glycine max] gi|255626383|gb|ACU13536.1| unknown [Glycine max]

 Score =  182 bits (462), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 93/145 (64%), Positives = 111/145 (76%), Gaps = 11/145 (7%)

Query: 28  LSTCNH--SKAFNKQTTHCRQKKLSRRKPILLSTSIDRGYLTRTAAGGVP-PPPLDLTED 84
           LS  N+  +K  +K TT+   + L+R KP        R  + +  +  +P PPPLDLTE+
Sbjct: 25  LSITNYHAAKPLSKTTTYSPLQSLTRGKP--------RRRMLKPISAALPAPPPLDLTEN 76

Query: 85  NVRQVIADARGELAQLFDTSVGITGVAELAELDGPFVKIRLRGRFWHKRSTVIARLANYL 144
           NV+QV+ DAR EL Q+FDTSVG+TGV ELA+LDGPFVKI L GRFWHKRSTV+AR+ANYL
Sbjct: 77  NVKQVLDDARKELGQIFDTSVGMTGVVELADLDGPFVKISLSGRFWHKRSTVLARVANYL 136

Query: 145 KQRIPEILEVDIEDEKQLDDSPENF 169
           KQRIPEILEVDIEDEKQLDDSPENF
Sbjct: 137 KQRIPEILEVDIEDEKQLDDSPENF 161

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296085081|emb|CBI28496.3| unnamed protein product [Vitis vinifera]

 Score =  179 bits (453), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 93/122 (76%), Positives = 101/122 (82%), Gaps = 6/122 (4%)

Query: 48  KLSRRKPILLSTSIDRGYLTRTAAGGVPPPPLDLTEDNVRQVIADARGELAQLFDTSVGI 107
           + SRR+P   ST++      R AA      PLDLTEDNVRQV+ADAR ELAQ+FD SVGI
Sbjct: 5   RWSRRRP---STAV---TTPRFAAVTASLSPLDLTEDNVRQVLADARVELAQIFDNSVGI 58

Query: 108 TGVAELAELDGPFVKIRLRGRFWHKRSTVIARLANYLKQRIPEILEVDIEDEKQLDDSPE 167
           TG AELAELDGPFVKI LRGRFWHKRSTV+AR+ANYLKQRIPEILEVDIEDEKQLDDSPE
Sbjct: 59  TGEAELAELDGPFVKISLRGRFWHKRSTVLARVANYLKQRIPEILEVDIEDEKQLDDSPE 118

Query: 168 NF 169
           NF
Sbjct: 119 NF 120

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225447436|ref|XP_002266103.1| PREDICTED: uncharacterized protein LOC100252893 [Vitis vinifera]

 Score =  179 bits (453), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 93/122 (76%), Positives = 101/122 (82%), Gaps = 6/122 (4%)

Query: 48  KLSRRKPILLSTSIDRGYLTRTAAGGVPPPPLDLTEDNVRQVIADARGELAQLFDTSVGI 107
           + SRR+P   ST++      R AA      PLDLTEDNVRQV+ADAR ELAQ+FD SVGI
Sbjct: 12  RWSRRRP---STAV---TTPRFAAVTASLSPLDLTEDNVRQVLADARVELAQIFDNSVGI 65

Query: 108 TGVAELAELDGPFVKIRLRGRFWHKRSTVIARLANYLKQRIPEILEVDIEDEKQLDDSPE 167
           TG AELAELDGPFVKI LRGRFWHKRSTV+AR+ANYLKQRIPEILEVDIEDEKQLDDSPE
Sbjct: 66  TGEAELAELDGPFVKISLRGRFWHKRSTVLARVANYLKQRIPEILEVDIEDEKQLDDSPE 125

Query: 168 NF 169
           NF
Sbjct: 126 NF 127

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351727633|ref|NP_001238447.1| uncharacterized protein LOC100500460 [Glycine max] gi|255630381|gb|ACU15547.1| unknown [Glycine max]

 Score =  176 bits (446), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 82/108 (75%), Positives = 96/108 (88%), Gaps = 1/108 (0%)

Query: 63  RGYLTRTAAGGVP-PPPLDLTEDNVRQVIADARGELAQLFDTSVGITGVAELAELDGPFV 121
           R  +++  +  +P PPPLDLTE+NV+QV+ DAR EL Q+FD+SVGITGV ELA+LDGPFV
Sbjct: 52  RRMISKPISAALPAPPPLDLTENNVKQVLEDARKELGQIFDSSVGITGVVELADLDGPFV 111

Query: 122 KIRLRGRFWHKRSTVIARLANYLKQRIPEILEVDIEDEKQLDDSPENF 169
           KI L+GRFWHKRSTV+AR+ANYLKQRIPEILEVDIEDEKQLDDSPENF
Sbjct: 112 KISLKGRFWHKRSTVLARVANYLKQRIPEILEVDIEDEKQLDDSPENF 159

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388490966|gb|AFK33549.1| unknown [Lotus japonicus]

 Score =  174 bits (442), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 78/94 (82%), Positives = 87/94 (92%)

Query: 76  PPPLDLTEDNVRQVIADARGELAQLFDTSVGITGVAELAELDGPFVKIRLRGRFWHKRST 135
           PPPLDLTE NV+QV+ADARGE  Q+FDTS G+TG+ ELAELDGPFVKI L+GRFWH+RS 
Sbjct: 81  PPPLDLTESNVKQVLADARGEFGQIFDTSAGMTGIVELAELDGPFVKISLKGRFWHERSM 140

Query: 136 VIARLANYLKQRIPEILEVDIEDEKQLDDSPENF 169
           V+AR+ANYLKQRIPEILEVDIEDEKQLDDSPENF
Sbjct: 141 VLARIANYLKQRIPEILEVDIEDEKQLDDSPENF 174

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224053471|ref|XP_002297831.1| predicted protein [Populus trichocarpa] gi|222845089|gb|EEE82636.1| predicted protein [Populus trichocarpa]

 Score =  173 bits (439), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 86/124 (69%), Positives = 97/124 (78%), Gaps = 7/124 (5%)

Query: 46  QKKLSRRKPILLSTSIDRGYLTRTAAGGVPPPPLDLTEDNVRQVIADARGELAQLFDTSV 105
           Q +   RKP  L+T          AA GVP PPLDLTE+NV+QV+ DAR EL Q+FDTSV
Sbjct: 15  QVQRPNRKPSPLTT-------ITAAAAGVPLPPLDLTEENVKQVLVDARAELGQIFDTSV 67

Query: 106 GITGVAELAELDGPFVKIRLRGRFWHKRSTVIARLANYLKQRIPEILEVDIEDEKQLDDS 165
           GITG  ELAELDGPFV I L+GRFWH+RS V+AR+ NYLKQRIPEILEV+IEDEKQLDDS
Sbjct: 68  GITGQVELAELDGPFVVISLKGRFWHERSMVVARIGNYLKQRIPEILEVEIEDEKQLDDS 127

Query: 166 PENF 169
           PENF
Sbjct: 128 PENF 131

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388521729|gb|AFK48926.1| unknown [Medicago truncatula]

 Score =  172 bits (436), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 93/155 (60%), Positives = 107/155 (69%), Gaps = 11/155 (7%)

Query: 25  RKILSTCNHSKAFNKQTTHCRQKKLSR-------RKPILLSTS---IDRGYLTRTAAGGV 74
           +K LS C  S      T++  QK             P+L ST+   + R     +A+  V
Sbjct: 5   QKALSLCCSSLKLCHTTSYSTQKPPFMTPNIHMLNYPLLTSTTRCKLHRKLKPLSASLSV 64

Query: 75  PPPPLDLTEDNVRQVIADARGELAQLFDTSVGITGVAELAELDGPFVKIRLRGRFWHKRS 134
            PP LDLTEDNVRQ + DARGEL Q+FDTSVG+TGV EL ELDGP+V I L+GRFWHKRS
Sbjct: 65  EPP-LDLTEDNVRQALVDARGELGQIFDTSVGMTGVVELVELDGPYVTISLKGRFWHKRS 123

Query: 135 TVIARLANYLKQRIPEILEVDIEDEKQLDDSPENF 169
           TV+ARLANYLKQRIPEILEVDIE EKQLDDSP NF
Sbjct: 124 TVLARLANYLKQRIPEILEVDIESEKQLDDSPANF 158

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297788659|ref|XP_002862394.1| hypothetical protein ARALYDRAFT_497470 [Arabidopsis lyrata subsp. lyrata] gi|297823099|ref|XP_002879432.1| hypothetical protein ARALYDRAFT_482253 [Arabidopsis lyrata subsp. lyrata] gi|297307867|gb|EFH38652.1| hypothetical protein ARALYDRAFT_497470 [Arabidopsis lyrata subsp. lyrata] gi|297325271|gb|EFH55691.1| hypothetical protein ARALYDRAFT_482253 [Arabidopsis lyrata subsp. lyrata]

 Score =  171 bits (433), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 89/166 (53%), Positives = 107/166 (64%), Gaps = 7/166 (4%)

Query: 11  MEAIHVHCHRYCFLRKILSTCNHSKAFNKQTTHCRQKKLSRRKPILLSTSIDRGYLTRT- 69
           ME + +  H    L K           N+     R   +  RKP+ L T + +    RT 
Sbjct: 1   MELVALPIHHRTGLSKFPPLKTGYPLVNRIGLALRFSNVRMRKPVYLGTILTKKSRARTL 60

Query: 70  ------AAGGVPPPPLDLTEDNVRQVIADARGELAQLFDTSVGITGVAELAELDGPFVKI 123
                 + GGV  PPLDLTEDN+  V+++AR ELAQLFD+SVGITG  EL ELDGPFVKI
Sbjct: 61  TTTEAVSGGGVSLPPLDLTEDNIHLVLSEARIELAQLFDSSVGITGQVELVELDGPFVKI 120

Query: 124 RLRGRFWHKRSTVIARLANYLKQRIPEILEVDIEDEKQLDDSPENF 169
            LRG+FWH R+ V+AR+ NYLKQRIPEILEV+IEDEKQLDDSP NF
Sbjct: 121 SLRGKFWHTRAMVLARIGNYLKQRIPEILEVEIEDEKQLDDSPANF 166

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358343531|ref|XP_003635854.1| hypothetical protein MTR_013s0001 [Medicago truncatula] gi|355501789|gb|AES82992.1| hypothetical protein MTR_013s0001 [Medicago truncatula]

 Score =  170 bits (430), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 87/130 (66%), Positives = 99/130 (76%), Gaps = 18/130 (13%)

Query: 41  TTHCRQKKLSRR-KPILLSTSIDRGYLTRTAAGGVPPPPLDLTEDNVRQVIADARGELAQ 99
           TT C   KL R+ KP+  S S++              PPLDLTEDNVRQ + DARGEL Q
Sbjct: 16  TTRC---KLHRKLKPLSASLSVE--------------PPLDLTEDNVRQALVDARGELGQ 58

Query: 100 LFDTSVGITGVAELAELDGPFVKIRLRGRFWHKRSTVIARLANYLKQRIPEILEVDIEDE 159
           +FDTSVG+TGV EL ELDGP+V I L+GRFWHKRSTV+ARLANYLKQRIPEILEVDIE+E
Sbjct: 59  IFDTSVGMTGVVELVELDGPYVTISLKGRFWHKRSTVLARLANYLKQRIPEILEVDIENE 118

Query: 160 KQLDDSPENF 169
           KQLDDSP+ F
Sbjct: 119 KQLDDSPKLF 128

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15225807|ref|NP_180876.1| uncharacterized protein [Arabidopsis thaliana] gi|2924776|gb|AAC04905.1| unknown protein [Arabidopsis thaliana] gi|17380722|gb|AAL36191.1| unknown protein [Arabidopsis thaliana] gi|21436295|gb|AAM51286.1| unknown protein [Arabidopsis thaliana] gi|330253701|gb|AEC08795.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  162 bits (409), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 83/139 (59%), Positives = 96/139 (69%), Gaps = 7/139 (5%)

Query: 38  NKQTTHCRQKKLSRRKPILLSTSIDRGYLTRT-------AAGGVPPPPLDLTEDNVRQVI 90
           N+     R   +  RKP  L T +      RT       +  GV  PPLDLTEDN+  V+
Sbjct: 28  NRIGQALRFSNVRMRKPAYLGTILSEKSRARTLTTAEAVSGSGVSLPPLDLTEDNIHLVL 87

Query: 91  ADARGELAQLFDTSVGITGVAELAELDGPFVKIRLRGRFWHKRSTVIARLANYLKQRIPE 150
           ++AR ELAQLFD+SVGITG  EL ELDGPFV I LRG+FWH R+ V+ARL NYLKQRIPE
Sbjct: 88  SEARIELAQLFDSSVGITGQVELVELDGPFVTISLRGKFWHTRAMVLARLGNYLKQRIPE 147

Query: 151 ILEVDIEDEKQLDDSPENF 169
           ILEV+IEDEKQLDDSP NF
Sbjct: 148 ILEVNIEDEKQLDDSPANF 166

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	169
TAIR|locus:2046510	166	AT2G33180 "AT2G33180" [Arabido	0.739	0.753	0.621	3.5e-36
UNIPROTKB|P74558	76	ssl2667 "NifU protein" [Synech	0.414	0.921	0.375	0.00023

TAIR|locus:2046510 AT2G33180 "AT2G33180" [Arabidopsis thaliana (taxid:3702)]

 Score = 390 (142.3 bits), Expect = 3.5e-36, P = 3.5e-36
 Identities = 82/132 (62%), Positives = 94/132 (71%)

Query:    45 RQKKLSRRKPILLSTSIDRGYLTRT-------AAGGVPPPPLDLTEDNVRQVIADARGEL 97
             R   +  RKP  L T +      RT       +  GV  PPLDLTEDN+  V+++AR EL
Sbjct:    35 RFSNVRMRKPAYLGTILSEKSRARTLTTAEAVSGSGVSLPPLDLTEDNIHLVLSEARIEL 94

Query:    98 AQLFDTSVGITGVAELAELDGPFVKIRLRGRFWHKRSTVIARLANYLKQRIPEILEVDIE 157
             AQLFD+SVGITG  EL ELDGPFV I LRG+FWH R+ V+ARL NYLKQRIPEILEV+IE
Sbjct:    95 AQLFDSSVGITGQVELVELDGPFVTISLRGKFWHTRAMVLARLGNYLKQRIPEILEVNIE 154

Query:   158 DEKQLDDSPENF 169
             DEKQLDDSP NF
Sbjct:   155 DEKQLDDSPANF 166

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0009073 "aromatic amino acid family biosynthetic process" evidence=RCA

GO:0016226 "iron-sulfur cluster assembly" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

UNIPROTKB|P74558 ssl2667 "NifU protein" [Synechocystis sp. PCC 6803 substr. Kazusa (taxid:1111708)]

 Score = 91 (37.1 bits), Expect = 0.00023, P = 0.00023
 Identities = 30/80 (37%), Positives = 45/80 (56%)

Query:    79 LDLTEDNVRQVIADARGELAQLFDTSVGITGVAELAELDGPFVKIRLRGRFWH-KRSTVI 137
             ++LT +NV  V+ + R  L  + D   G  G  E+ ELDGP VK+RL+G       ST+ 
Sbjct:     1 MELTLNNVETVLDELRPYL--MAD---G--GNVEVVELDGPIVKVRLQGACGSCPSSTMT 53

Query:   138 ARLA--NYLKQRIPEILEVD 155
              ++     L++ IPEI EV+
Sbjct:    54 LKMGIERKLREMIPEIAEVE 73


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.137   0.409    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      169       169   0.00082  108 3  11 22  0.36    32
                                                     31  0.47    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  577 (61 KB)
  Total size of DFA:  141 KB (2087 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  16.23u 0.09s 16.32t   Elapsed:  00:00:00
  Total cpu time:  16.23u 0.09s 16.32t   Elapsed:  00:00:00
  Start:  Fri May 10 04:52:50 2013   End:  Fri May 10 04:52:50 2013

GO:0016226 "iron-sulfur cluster assembly" evidence=IDA

GO:0051537 "2 iron, 2 sulfur cluster binding" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: grail3.0008006901 hypothetical protein (132 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	169
PF01106	68	NifU: NifU-like domain; InterPro: IPR001075 Iron-s	99.89
COG0694	93	Thioredoxin-like proteins and domains [Posttransla	99.85
TIGR03341	190	YhgI_GntY IscR-regulated protein YhgI. IscR (TIGR0	99.84
PRK11190	192	Fe/S biogenesis protein NfuA; Provisional	99.84
TIGR02000	290	NifU_proper Fe-S cluster assembly protein NifU. Th	99.78
KOG2358	213	consensus NifU-like domain-containing proteins [Po	99.31
KOG2358	213	consensus NifU-like domain-containing proteins [Po	98.39
PF01883	72	DUF59: Domain of unknown function DUF59; InterPro:	97.78
TIGR02945	99	SUF_assoc FeS assembly SUF system protein. Members	96.36
COG2151	111	PaaD Predicted metal-sulfur cluster biosynthetic e	96.08
TIGR03406	174	FeS_long_SufT probable FeS assembly SUF system pro	94.88
PRK11670	369	antiporter inner membrane protein; Provisional	93.86
TIGR02159	146	PA_CoA_Oxy4 phenylacetate-CoA oxygenase, PaaJ subu	91.7
PRK03941	174	NTPase; Reviewed	85.84
PRK11702	108	hypothetical protein; Provisional	83.36
PF10646	117	Germane: Sporulation and spore germination; InterP	82.47

>PF01106 NifU: NifU-like domain; InterPro: IPR001075 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron

Probab=99.89  E-value=6.5e-23  Score=143.59  Aligned_cols=64  Identities=27%  Similarity=0.336  Sum_probs=61.2

Q ss_pred             HHHHHHHHHHHHhhccccCcCCcccEEEEEecCCeEEEEEeecCCCch---hhHHHHHHHHHHHhCCCceEEEe
Q 030939           86 VRQVIADARGELAQLFDTSVGITGVAELAELDGPFVKIRLRGRFWHKR---STVIARLANYLKQRIPEILEVDI  156 (169)
Q Consensus        86 Ve~VLeeiRP~L~~Df~~~vGiGGDVELVdvdgg~VkVrL~GaC~~Cp---~Tlk~gIE~~Lke~IPEI~~V~i  156 (169)
                      |+++|++|||+|++|       |||+||++++++.|+|||+|+|.+||   +|++.+||+.|++++|++++|+.
T Consensus         1 V~~~l~~IrP~L~~d-------GGdv~lv~v~~~~V~V~l~GaC~gC~~s~~Tl~~~Ie~~L~~~~~~v~~V~~   67 (68)
T PF01106_consen    1 VEEVLEEIRPYLQSD-------GGDVELVDVDDGVVYVRLTGACSGCPSSDMTLKQGIEQALREAVPEVKRVVP   67 (68)
T ss_dssp             HHHHHHHCHHHHHHT-------TEEEEEEEEETTEEEEEEESSCCSSCCHHHHHHHHHHHHHHHHSTT-SEEEE
T ss_pred             CHHHHHHhChHHHhc-------CCcEEEEEecCCEEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCCceEEE
Confidence            789999999999999       99999999999999999999999999   99999999999999999999975

These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] []. FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins [, ]. It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly []. The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA []. SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA [], acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins []. Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen []. This entry represents the C-terminal of NifU and homologous proteins. NifU contains two domains: an N-terminal (IPR002871 from INTERPRO) and a C-terminal domain []. These domains exist either together or on different polypeptides, both domains being found in organisms that do not fix nitrogen (e.g. yeast), so they have a broader significance in the cell than nitrogen fixation. ; GO: 0005506 iron ion binding, 0051536 iron-sulfur cluster binding, 0016226 iron-sulfur cluster assembly; PDB: 2JNV_A 2Z51_A 1TH5_A 1VEH_A 1XHJ_A.

>COG0694 Thioredoxin-like proteins and domains [Posttranslational modification, protein turnover, chaperones]

Probab=99.85  E-value=1.7e-21  Score=145.83  Aligned_cols=71  Identities=31%  Similarity=0.362  Sum_probs=66.8

Q ss_pred             cHHHHHHHHH-HHHHHHhhccccCcCCcccEEEEEec--CCeEEEEEeecCCCch---hhHHHHHHHHHHHhCCCceEEE
Q 030939           82 TEDNVRQVIA-DARGELAQLFDTSVGITGVAELAELD--GPFVKIRLRGRFWHKR---STVIARLANYLKQRIPEILEVD  155 (169)
Q Consensus        82 teE~Ve~VLe-eiRP~L~~Df~~~vGiGGDVELVdvd--gg~VkVrL~GaC~~Cp---~Tlk~gIE~~Lke~IPEI~~V~  155 (169)
                      ..|+|+++|+ +|||+|++|       ||||||++++  +|+|+|||.|||++||   +|+|++||+.|++.+||+++|+
T Consensus        10 ~~e~v~~~l~~~irP~l~~d-------GGdve~~~i~~~~g~V~l~l~GaC~gC~sS~~TLk~gIE~~L~~~i~ev~~V~   82 (93)
T COG0694          10 LLERVEEVLDEKIRPQLAMD-------GGDVELVGIDEEDGVVYLRLGGACSGCPSSTVTLKNGIERQLKEEIPEVKEVE   82 (93)
T ss_pred             HHHHHHHHHHhccCcceecc-------CCeEEEEEEecCCCeEEEEeCCcCCCCcccHHHHHHHHHHHHHHhCCccceEE
Confidence            4789999999 799999999       9999999998  7899999999999999   8999999999999999999998


Q ss_pred             ecCC
Q 030939          156 IEDE  159 (169)
Q Consensus       156 i~d~  159 (169)
                      .+..
T Consensus        83 ~v~~   86 (93)
T COG0694          83 QVTE   86 (93)
T ss_pred             EccC
Confidence            7654

>TIGR03341 YhgI_GntY IscR-regulated protein YhgI

Probab=99.84  E-value=9.2e-21  Score=154.75  Aligned_cols=75  Identities=19%  Similarity=0.235  Sum_probs=68.7

Q ss_pred             ccHHHHHHHHH-HHHHHHhhccccCcCCcccEEEEEec-CCeEEEEEeecCCCch---hhHHHHHHHHHHHhCCCceEEE
Q 030939           81 LTEDNVRQVIA-DARGELAQLFDTSVGITGVAELAELD-GPFVKIRLRGRFWHKR---STVIARLANYLKQRIPEILEVD  155 (169)
Q Consensus        81 LteE~Ve~VLe-eiRP~L~~Df~~~vGiGGDVELVdvd-gg~VkVrL~GaC~~Cp---~Tlk~gIE~~Lke~IPEI~~V~  155 (169)
                      -+.++|+++|+ +|||+|++|       |||||||+++ +++|+|||+|+|.+||   +||+.+||+.|++++|||++|+
T Consensus       105 ~~~~~i~~~l~~~irP~l~~d-------GGdielv~v~~~~~v~v~l~GaC~gC~~s~~Tl~~~ie~~l~~~~p~v~~V~  177 (190)
T TIGR03341       105 PLEERINYVLQSEINPQLASH-------GGKVTLVEITDDGVAVLQFGGGCNGCSMVDVTLKDGVEKTLLERFPELKGVR  177 (190)
T ss_pred             HHHHHHHHHHHhccCHHHHhc-------CCceEEEEEcCCCEEEEEEeecCCCCcchHHHHHHHHHHHHHHhCCCcceEE
Confidence            36899999998 799999999       9999999997 5799999999999999   9999999999999999999999


Q ss_pred             ecCCccc
Q 030939          156 IEDEKQL  162 (169)
Q Consensus       156 i~d~~ql  162 (169)
                      .+...+-
T Consensus       178 ~~~~~~~  184 (190)
T TIGR03341       178 DATDHTR  184 (190)
T ss_pred             EecCccc
Confidence            8655543

IscR (TIGR02010) is an iron-sulfur cluster-binding transcriptional regulator (see Genome Property GenProp0138). Members of this protein family include YhgI, whose expression is under control of IscR, and show sequence similarity to IscA, a known protein of iron-sulfur cluster biosynthesis. These two lines of evidence strongly suggest a role as an iron-sulfur cluster biosynthesis protein. An older study designated this protein GntY and suggested a role for it and for the product of an adjacent gene, based on complementation studies, in gluconate utilization.

>PRK11190 Fe/S biogenesis protein NfuA; Provisional

Probab=99.84  E-value=7.3e-21  Score=155.94  Aligned_cols=78  Identities=19%  Similarity=0.217  Sum_probs=71.1

Q ss_pred             cHHHHHHHHH-HHHHHHhhccccCcCCcccEEEEEec-CCeEEEEEeecCCCch---hhHHHHHHHHHHHhCC-CceEEE
Q 030939           82 TEDNVRQVIA-DARGELAQLFDTSVGITGVAELAELD-GPFVKIRLRGRFWHKR---STVIARLANYLKQRIP-EILEVD  155 (169)
Q Consensus        82 teE~Ve~VLe-eiRP~L~~Df~~~vGiGGDVELVdvd-gg~VkVrL~GaC~~Cp---~Tlk~gIE~~Lke~IP-EI~~V~  155 (169)
                      ++++|+++|+ +|||+|++|       |||||||+++ +++|+|||+|+|.+||   +||+.+||+.|++++| ||++|+
T Consensus       107 ~~~~i~~~l~~~irP~l~~d-------GGdielv~v~~~~~v~v~l~GaC~gC~~s~~Tl~~~Ie~~l~~~~p~~i~~v~  179 (192)
T PRK11190        107 LMERVEYVLQSQINPQLAGH-------GGRVSLMEITEDGYAILQFGGGCNGCSMVDVTLKEGIEKQLLNEFPGELKGVR  179 (192)
T ss_pred             HHHHHHHHHHhccChhHHhc-------CCcEEEEEEcCCCEEEEEEeecCCCCcchHHHHHHHHHHHHHHhCCHhhceEE
Confidence            5899999998 799999999       9999999997 5899999999999999   9999999999999999 999999


Q ss_pred             ecCCcccCCCC
Q 030939          156 IEDEKQLDDSP  166 (169)
Q Consensus       156 i~d~~ql~d~~  166 (169)
                      .+.+.+.-..|
T Consensus       180 ~v~~~~~~~~~  190 (192)
T PRK11190        180 DLTEHQRGEHS  190 (192)
T ss_pred             EecccccCCCC
Confidence            88776655443

>TIGR02000 NifU_proper Fe-S cluster assembly protein NifU

Probab=99.78  E-value=5.6e-19  Score=152.10  Aligned_cols=68  Identities=24%  Similarity=0.315  Sum_probs=64.7

Q ss_pred             cHHHHHHHHHHHHHHHhhccccCcCCcccEEEEEecCCeEEEEEeecCCCch---hhHHHHHHHHHHHhCCCceEEEec
Q 030939           82 TEDNVRQVIADARGELAQLFDTSVGITGVAELAELDGPFVKIRLRGRFWHKR---STVIARLANYLKQRIPEILEVDIE  157 (169)
Q Consensus        82 teE~Ve~VLeeiRP~L~~Df~~~vGiGGDVELVdvdgg~VkVrL~GaC~~Cp---~Tlk~gIE~~Lke~IPEI~~V~i~  157 (169)
                      ..++|+++|++|||+|++|       |||||||+|++++|+|||+|+|.+||   +||+. ||+.|++++|++++|+.+
T Consensus       220 ~~~~v~~~l~~irP~l~~d-------GGdv~lv~v~~~~v~v~l~GaC~gC~~s~~Tl~~-Ie~~l~~~~p~~~~V~~v  290 (290)
T TIGR02000       220 RIQLIQKVLEEVRPVLQAD-------GGDVELYDVDGKIVYVVLTGACSGCSMSTMTLKG-IQQRLRERLGEFVVVEAV  290 (290)
T ss_pred             HHHHHHHHHHHhCchHhhc-------CCcEEEEEEeCCEEEEEEeeCCCCCcchHHHHHH-HHHHHHHhCCCceEEEeC
Confidence            3689999999999999999       99999999999999999999999999   99998 999999999999999863

Three different but partially homologous Fe-S cluster assembly systems have been described: Isc, Suf, and Nif. The latter is associated with donation of an Fe-S cluster to nitrogenase in a number of nitrogen-fixing species. NifU, described here, consists of an N-terminal domain (pfam01592) and a C-terminal domain (pfam01106). Homologs with an equivalent domain archictecture from Helicobacter and Campylobacter, however, are excluded from this model by a high trusted cutoff. The model, therefore, is specific for NifU involved in nitrogenase maturation. The related model TIGR01999 homologous to the N-terminus of this model describes IscU from the Isc system as in E. coli, Saccharomyces cerevisiae, and Homo sapiens.

>KOG2358 consensus NifU-like domain-containing proteins [Posttranslational modification, protein turnover, chaperones]

Probab=99.31  E-value=6.2e-13  Score=112.34  Aligned_cols=67  Identities=18%  Similarity=0.279  Sum_probs=61.1

Q ss_pred             HHHHHHHHH-HHHHHHhhccccCcCCcccEEEEEecC--CeEEEEEeecCCCch---hhHHHHHHHHHHHhCCCceEEEe
Q 030939           83 EDNVRQVIA-DARGELAQLFDTSVGITGVAELAELDG--PFVKIRLRGRFWHKR---STVIARLANYLKQRIPEILEVDI  156 (169)
Q Consensus        83 eE~Ve~VLe-eiRP~L~~Df~~~vGiGGDVELVdvdg--g~VkVrL~GaC~~Cp---~Tlk~gIE~~Lke~IPEI~~V~i  156 (169)
                      -..+++.|| .|||.++.|       |||+++++.|+  |.|++||+|+|.+||   .|+++|||+.|+..+|||+.|+-
T Consensus       125 t~~ikelietRiRp~i~ed-------ggdi~y~g~e~g~g~v~lklqgact~cpss~vtlk~Gie~mL~~y~~eVK~v~q  197 (213)
T KOG2358|consen  125 TMTIKELIETRIRPKIQED-------GGDEDYVGFETGLGLVSLKLQGACTECPSSLVTLKNGIENMLEIYVPEVKGVIQ  197 (213)
T ss_pred             HHHHHHHHHHhhhhhhhcc-------CCceeeccccCccchHHHHHhhhhccCCcccchhhhhHHHHHHhhcceeeEEEe
Confidence            345667776 699999999       99999999987  699999999999999   89999999999999999999975

>KOG2358 consensus NifU-like domain-containing proteins [Posttranslational modification, protein turnover, chaperones]

Probab=98.39  E-value=1.4e-07  Score=80.14  Aligned_cols=78  Identities=23%  Similarity=0.210  Sum_probs=70.1

Q ss_pred             CCCCCCCccccHHHHHHHHHHHHHHHhhccccCcCCcccEEEEEecCCeEEEEEeecCCCch---hhHHHHHHHHHHHhC
Q 030939           72 GGVPPPPLDLTEDNVRQVIADARGELAQLFDTSVGITGVAELAELDGPFVKIRLRGRFWHKR---STVIARLANYLKQRI  148 (169)
Q Consensus        72 ~~~~~~~l~LteE~Ve~VLeeiRP~L~~Df~~~vGiGGDVELVdvdgg~VkVrL~GaC~~Cp---~Tlk~gIE~~Lke~I  148 (169)
                      ++....-..+++|++..+|+..||++.+|       ||++-+=.++|.++.++++|+|..|+   +|+|++||..|+.+|
T Consensus        68 g~dfvtv~k~~ee~~w~~L~p~i~~~~sd-------~g~~g~pli~g~~~~~~~~~~~e~d~e~t~~ikelietRiRp~i  140 (213)
T KOG2358|consen   68 GPDFVTVTKLTEENVWSVLDPEIPSLMSD-------GGNVGLPLIDGNIVVLKLQGACESDPESTMTIKELIETRIRPKI  140 (213)
T ss_pred             cCCeEEEeccchhhhHhhhchhhHHHHhc-------cccccchhhccchhhhhhcccccCChhHHHHHHHHHHHhhhhhh
Confidence            44444455689999999999999999999       99999999999999999999999999   999999999999999


Q ss_pred             CCceEEEe
Q 030939          149 PEILEVDI  156 (169)
Q Consensus       149 PEI~~V~i  156 (169)
                      ||+-.++.
T Consensus       141 ~edggdi~  148 (213)
T KOG2358|consen  141 QEDGGDED  148 (213)
T ss_pred             hccCCcee
Confidence            99877654

>PF01883 DUF59: Domain of unknown function DUF59; InterPro: IPR002744 This family includes prokaryotic proteins of unknown function

Probab=97.78  E-value=9.2e-05  Score=50.56  Aligned_cols=69  Identities=17%  Similarity=0.216  Sum_probs=55.4

Q ss_pred             HHHHHHHHHHH-HHHHhhccccCcCCcccEEEEEecCCeEEEEEeecCCCch--hhHHHHHHHHHHHhCCCceEEEe
Q 030939           83 EDNVRQVIADA-RGELAQLFDTSVGITGVAELAELDGPFVKIRLRGRFWHKR--STVIARLANYLKQRIPEILEVDI  156 (169)
Q Consensus        83 eE~Ve~VLeei-RP~L~~Df~~~vGiGGDVELVdvdgg~VkVrL~GaC~~Cp--~Tlk~gIE~~Lke~IPEI~~V~i  156 (169)
                      +++|.++|..+ =|++..|    +-=-|-|+=++++|+.|.|.|.-...+|+  ..++..|+++|+ .+|++.+|++
T Consensus         1 k~~V~~aL~~v~dP~~~~~----iv~~g~V~~i~i~~~~V~v~l~l~~~~~~~~~~l~~~i~~~l~-~l~gv~~V~V   72 (72)
T PF01883_consen    1 KQAVRDALKQVKDPELGKD----IVELGMVRDISIEGGKVSVSLELPTPACPAAEPLREEIREALK-ALPGVKSVKV   72 (72)
T ss_dssp             HHHHHHHHTT-BETTTSSB----TTTTTSEEEEEECTCEEEEEE--SSTTHTTHHHHHHHHHHHHH-TSTT-SEEEE
T ss_pred             CHHHHHHHhCCCCCCCCCC----HHHcCCeeEEEEECCEEEEEEEECCCCchHHHHHHHHHHHHHH-hCCCCceEeC
Confidence            57788888876 7777766    33367889999999999999999999999  889999999999 8999999875

The family also includes PhaH (O84984 from SWISSPROT) from Pseudomonas putida. PhaH forms a complex with PhaF (O84982 from SWISSPROT), PhaG (O84983 from SWISSPROT) and PhaI (O84985 from SWISSPROT), which hydroxylates phenylacetic acid to 2-hydroxyphenylacetic acid []. So members of this family may all be components of ring hydroxylating complexes.; PDB: 3LNO_C 3CQ3_A 3CQ2_D 2CU6_B 3CQ1_A 3UX3_B 3UX2_A 1WCJ_A 1UWD_A.

>TIGR02945 SUF_assoc FeS assembly SUF system protein

Probab=96.36  E-value=0.012  Score=42.49  Aligned_cols=70  Identities=16%  Similarity=0.192  Sum_probs=53.7

Q ss_pred             HHHHHHHHHHH-HHHHhhccccCcCCcccEEEEEecC-CeEEEEEeecCCCch--hhHHHHHHHHHHHhCCCceEEEec
Q 030939           83 EDNVRQVIADA-RGELAQLFDTSVGITGVAELAELDG-PFVKIRLRGRFWHKR--STVIARLANYLKQRIPEILEVDIE  157 (169)
Q Consensus        83 eE~Ve~VLeei-RP~L~~Df~~~vGiGGDVELVdvdg-g~VkVrL~GaC~~Cp--~Tlk~gIE~~Lke~IPEI~~V~i~  157 (169)
                      +++|.++|+.+ =|.+..+    +.--|-|.=+++++ +.|.|.|.-.+.+|+  ..++..++..|.+ +|++..|.+.
T Consensus         3 ~~~I~~~L~~v~dP~l~~~----lv~~g~V~~i~v~~~~~v~i~l~l~~p~~~~~~~l~~~i~~al~~-l~gv~~v~v~   76 (99)
T TIGR02945         3 KDAVIEALKTVYDPEIPVN----IYELGLIYDIDVDDDGHVDIQMTLTAPNCPVAGSMPGEVENAVRA-VPGVGSVTVE   76 (99)
T ss_pred             HHHHHHHHcCCCCCCCCCC----eecCCCeeEEEECCCCeEEEEEEECCCCCChHHHHHHHHHHHHHh-CCCCceEEEE
Confidence            57788888876 6666665    33356677778885 899999999999999  6688888888864 8888877653

Members of this family belong to the broader Pfam family pfam01883, or Domain of Unknown Function DUF59. Many members of DUF59 are candidate ring hydroxylating complex subunits. However, members of the narrower family defined here all are found in genomes that carry the FeS assembly SUF system. For 70 % of these species, the member of this protein family is found as part of the SUF locus, usually immediately downstream of the sufS gene.

>COG2151 PaaD Predicted metal-sulfur cluster biosynthetic enzyme [General function prediction only]

Probab=96.08  E-value=0.052  Score=42.12  Aligned_cols=75  Identities=20%  Similarity=0.387  Sum_probs=49.7

Q ss_pred             cHHHHHHHHHHHHHHHhhccccCcCCc----ccEEEEEec--CCeEEEEEeecCCCch--hhHHHHHHHHHHHhCCCceE
Q 030939           82 TEDNVRQVIADARGELAQLFDTSVGIT----GVAELAELD--GPFVKIRLRGRFWHKR--STVIARLANYLKQRIPEILE  153 (169)
Q Consensus        82 teE~Ve~VLeeiRP~L~~Df~~~vGiG----GDVELVdvd--gg~VkVrL~GaC~~Cp--~Tlk~gIE~~Lke~IPEI~~  153 (169)
                      +++.++..++++.-+|.+-||.-+||-    |=|.=|+++  ++.|+|+++..-.+||  .-+...++++|++ +|++..
T Consensus         6 ~~~~~~~~~~~i~~aL~~V~DPEi~idIvdLGLVy~v~i~~~~~~v~v~mtlT~~gCP~~~~i~~~v~~al~~-~~~v~~   84 (111)
T COG2151           6 EEEAIKVTLEDILEALKTVIDPEIGIDIVDLGLVYEVDIDDVDGLVKVKMTLTSPGCPLAEVIADQVEAALEE-IPGVED   84 (111)
T ss_pred             ccchhhhhHHHHHHHhhcCCCcccceeeEeeccEEEEEEecCCceEEEEEecCCCCCCccHHHHHHHHHHHHh-cCCcce
Confidence            344455555555555666565554443    223336665  4589999999999999  4566678777766 787887


Q ss_pred             EEec
Q 030939          154 VDIE  157 (169)
Q Consensus       154 V~i~  157 (169)
                      |+++
T Consensus        85 v~V~   88 (111)
T COG2151          85 VEVE   88 (111)
T ss_pred             EEEE
Confidence            7764

>TIGR03406 FeS_long_SufT probable FeS assembly SUF system protein SufT

Probab=94.88  E-value=0.092  Score=43.13  Aligned_cols=72  Identities=14%  Similarity=0.151  Sum_probs=52.4

Q ss_pred             cccHHHHHHHHHHH-HHHHhhccccCcCCcccEEEEEecC---C--eEEEEEeecCCCch--hhHHHHHHHHHHHhCCCc
Q 030939           80 DLTEDNVRQVIADA-RGELAQLFDTSVGITGVAELAELDG---P--FVKIRLRGRFWHKR--STVIARLANYLKQRIPEI  151 (169)
Q Consensus        80 ~LteE~Ve~VLeei-RP~L~~Df~~~vGiGGDVELVdvdg---g--~VkVrL~GaC~~Cp--~Tlk~gIE~~Lke~IPEI  151 (169)
                      +.++++|.++|+.+ =|.+..+    +-=-|-|.=+++++   +  .|.|.|+=.+.+|+  ..++.-|++.|++ +|++
T Consensus        72 ~~~ee~V~eaL~tV~DPei~~n----IVeLGlV~~I~Id~~~~~~~~V~I~mtLt~p~c~~~~~L~~dV~~aL~~-l~gV  146 (174)
T TIGR03406        72 EDNEDQVWEQLRTVYDPEIPVN----IVDLGLVYGCRVEKLGEGQFRVDIEMTLTAPGCGMGPVLVEDVEDKVLA-VPNV  146 (174)
T ss_pred             cccHHHHHHHHcCCCCCCCCCC----hHHcCCeEEEEEecccCCCCEEEEEEEeCCCCCcHHHHHHHHHHHHHHh-CCCc
Confidence            45667788887776 6666654    11135566567765   5  89999999999999  5578888888864 8998


Q ss_pred             eEEEe
Q 030939          152 LEVDI  156 (169)
Q Consensus       152 ~~V~i  156 (169)
                      .+|.+
T Consensus       147 ~~V~V  151 (174)
T TIGR03406       147 DEVEV  151 (174)
T ss_pred             eeEEE
Confidence            88765

The function is unknown for this protein family, but members are found almost always in operons for the the SUF system of iron-sulfur cluster biosynthesis. The SUF system is present elsewhere on the chromosome for those few species where SUF genes are not adjacent. This family shares this property of association with the SUF system with a related family, TIGR02945. TIGR02945 consists largely of a DUF59 domain (see Pfam family pfam01883), while this protein is about double the length, with a unique N-terminal domain and DUF59 C-terminal domain. A location immediately downstream of the cysteine desulfurase gene sufS in many contexts suggests the gene symbol sufT. Note that some other homologs of this family and of TIGR02945, but no actual members of this family, are found in operons associated with phenylacetic acid (or other ring-hydroxylating) degradation pathways.

>PRK11670 antiporter inner membrane protein; Provisional

Probab=93.86  E-value=0.19  Score=44.81  Aligned_cols=72  Identities=14%  Similarity=0.069  Sum_probs=57.3

Q ss_pred             cccHHHHHHHHHHH-HHHHhhccccCcCCcccEEEEEecCCeEEEEEeecCCCch--hhHHHHHHHHHHHhCCCceEEEe
Q 030939           80 DLTEDNVRQVIADA-RGELAQLFDTSVGITGVAELAELDGPFVKIRLRGRFWHKR--STVIARLANYLKQRIPEILEVDI  156 (169)
Q Consensus        80 ~LteE~Ve~VLeei-RP~L~~Df~~~vGiGGDVELVdvdgg~VkVrL~GaC~~Cp--~Tlk~gIE~~Lke~IPEI~~V~i  156 (169)
                      .+++++|.++|.++ -|.+..|    +---|-|.=++++++.|.+.|.-.-..||  ..++..+++.|++ +|++.+|.+
T Consensus        11 ~~~~~~v~~~l~~v~~p~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~   85 (369)
T PRK11670         11 EALRAMVAGTLANFQHPTLKHN----LTTLKALHHVALLDDTLHIELVMPFVWNSAFEELKEQCSAELLR-ITGAKAIDW   85 (369)
T ss_pred             cchHHHHHHHHhcCCCCCCCCC----hhhhCCeeEEEEeCCEEEEEEEECCCCchHHHHHHHHHHHHHHh-cCCCceEEE
Confidence            45779999999987 7877776    22145566678888999999999999999  6788899999985 899887765

>TIGR02159 PA_CoA_Oxy4 phenylacetate-CoA oxygenase, PaaJ subunit

Probab=91.70  E-value=0.68  Score=37.05  Aligned_cols=47  Identities=11%  Similarity=0.210  Sum_probs=39.1

Q ss_pred             cccEEEEEecCCeEEEEEeecCCCch--hhHHHHHHHHHHHhCCCceEEEe
Q 030939          108 TGVAELAELDGPFVKIRLRGRFWHKR--STVIARLANYLKQRIPEILEVDI  156 (169)
Q Consensus       108 GGDVELVdvdgg~VkVrL~GaC~~Cp--~Tlk~gIE~~Lke~IPEI~~V~i  156 (169)
                      -|-|.=|+++++.|.|.|+-...+||  ..++..|++.|++.  ++..|++
T Consensus        14 LG~Vr~V~v~gd~V~VtIt~Ty~gcpa~e~L~~~I~~aL~~~--Gv~~V~V   62 (146)
T TIGR02159        14 LGMVREVDVDGGGVVVKFTPTYSGCPALEVIRQDIRDAVRAL--GVEVVEV   62 (146)
T ss_pred             cCCeeEEEEECCEEEEEEEeCCCCCchHHHHHHHHHHHHHhc--CCCeEEE
Confidence            46777788888999999999999999  67888999999884  6666554

Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.

>PRK03941 NTPase; Reviewed

Probab=85.84  E-value=0.93  Score=37.58  Aligned_cols=42  Identities=33%  Similarity=0.493  Sum_probs=37.2

Q ss_pred             cccCCCCCCCccccHHHHHHHHHHHHHHHhhccccCcCCcccEE
Q 030939           69 TAAGGVPPPPLDLTEDNVRQVIADARGELAQLFDTSVGITGVAE  112 (169)
Q Consensus        69 ~~~~~~~~~~l~LteE~Ve~VLeeiRP~L~~Df~~~vGiGGDVE  112 (169)
                      .+.++++++|+.  +|.++.+++..+-.|++|.|.+|||-|.|+
T Consensus        33 ~v~SgV~~QP~g--eET~~GA~nRA~~A~~~~ad~gVGiEgGv~   74 (174)
T PRK03941         33 EVDSGVPDQPFG--EETVKGAINRAKNAYSPDFDFSVGIEAGLF   74 (174)
T ss_pred             cCCCCCCCCCCC--HHHHHHHHHHHHHHHhcCCCEEEEEeeeEe
Confidence            466889999997  999999999999999878889999988887

>PRK11702 hypothetical protein; Provisional

Probab=83.36  E-value=6.7  Score=30.70  Aligned_cols=68  Identities=9%  Similarity=0.145  Sum_probs=47.2

Q ss_pred             ccHHHHHHHHHHH-HHHHhhccccCcCCcccEEEEEecCCeEEEEEeecCCCchhhHHHHHHHHHHHhCCCceEEEecC
Q 030939           81 LTEDNVRQVIADA-RGELAQLFDTSVGITGVAELAELDGPFVKIRLRGRFWHKRSTVIARLANYLKQRIPEILEVDIED  158 (169)
Q Consensus        81 LteE~Ve~VLeei-RP~L~~Df~~~vGiGGDVELVdvdgg~VkVrL~GaC~~Cp~Tlk~gIE~~Lke~IPEI~~V~i~d  158 (169)
                      +++|.+...+|+. .-++... |-+.|.||..+   . +|+|-..=.   +.|...-+..|+.+|+.+  ++++|++.+
T Consensus        33 ~~~e~~D~~vD~fIde~Ie~n-gL~f~G~G~~~---~-eG~vc~~~~---gs~tEe~R~~V~~WL~~r--~v~~v~vse  101 (108)
T PRK11702         33 TSEEQIDATVDAFIDEVIEPN-GLAFDGSGYLA---W-EGLICLQKI---GKCTEEHRALVKKWLEGR--KLTDVEVSE  101 (108)
T ss_pred             CCHHHHHHHHHHHHHHHHhcC-CceecCCccee---E-EEEEeeccc---CCCCHHHHHHHHHHHHhC--CCceEEeec
Confidence            5678888888763 5566665 45556566432   2 466664333   556778888999999999  999998754

>PF10646 Germane: Sporulation and spore germination; InterPro: IPR019606 The GerMN domain is a region of approximately 100 residues that is found, duplicated, in the Bacillus GerM protein and is implicated in both sporulation and spore germination

Probab=82.47  E-value=6  Score=28.39  Aligned_cols=52  Identities=23%  Similarity=0.474  Sum_probs=39.4

Q ss_pred             EEEec-CCeEEEEEeecCC----Cch-hhHHHHHHHHHHHhCCCceEEEe-cCCcccCC
Q 030939          113 LAELD-GPFVKIRLRGRFW----HKR-STVIARLANYLKQRIPEILEVDI-EDEKQLDD  164 (169)
Q Consensus       113 LVdvd-gg~VkVrL~GaC~----~Cp-~Tlk~gIE~~Lke~IPEI~~V~i-~d~~ql~d  164 (169)
                      =+.++ |+.++|.|.....    .|. .-+.+.|-..|.+.+++|.+|.+ +|++.+++
T Consensus        57 ~v~~~~~~~~~Vd~s~~~~~~~~~~~~~~~~~~i~~Tl~~~~~~v~~V~i~vdG~~~~~  115 (117)
T PF10646_consen   57 SVTVDDGNTLTVDFSSEFLNFLGSSQEALLLAQIVNTLTEQFPGVKKVQILVDGKPLES  115 (117)
T ss_pred             eEEECCCCEEEEECCHHHhhcCChHHHHHHHHHHHHHHHHhcCCccEEEEEECCEEcCc
Confidence            35556 5599999988663    232 56777888999999999999997 78777764

It is also found in lipoprotein LpqB. The domain is present in a number of different bacterial species both alone and in association with other domains such as Gmad1 and Gmad2. It is predicted to have a novel alpha-beta fold.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	169
1th5_A	74	NIFU1; iron-sulfur cluster binding, structural gen	1e-11

>1th5_A NIFU1; iron-sulfur cluster binding, structural genomics, program for RICE genome research, unknown function; NMR {Oryza sativa} SCOP: d.52.8.1 Length = 74

 Score = 56.5 bits (137), Expect = 1e-11
 Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 7/78 (8%)

Query: 79  LDLTEDNVRQVIADARGELAQLFDTSVGITGVAELAELDGPFVKIRLRGRFWHKRSTVIA 138
           L+L E+NV +V+ + R  LA     + G  G  +   + GP VK+RL G       TV  
Sbjct: 2   LELNEENVEKVLNEIRPYLAG----TGG--GGLQFLMIKGPIVKVRLTGPAAV-VRTVRI 54

Query: 139 RLANYLKQRIPEILEVDI 156
            ++  L+++IP I  V +
Sbjct: 55  AVSKKLREKIPSIQIVQL 72

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	169
1xhj_A	88	Nitrogen fixation protein NIFU; alpha-beta, NIFU-l	99.93
1th5_A	74	NIFU1; iron-sulfur cluster binding, structural gen	99.92
1veh_A	92	NIFU-like protein hirip5; structural genomics, mou	99.9
2z51_A	154	NIFU-like protein 2, chloroplast; CNFU, iron-sulfu	99.89
2z51_A	154	NIFU-like protein 2, chloroplast; CNFU, iron-sulfu	99.89
3cq1_A	103	Putative uncharacterized protein TTHB138; DTDP-4-k	98.38
1uwd_A	103	Hypothetical protein TM0487; similar to PAAD prote	98.02
3lno_A	108	Putative uncharacterized protein; alpha-beta fold,	97.62

>1xhj_A Nitrogen fixation protein NIFU; alpha-beta, NIFU-like, structural genomics, protein structur initiative, NESG, PSI; NMR {Staphylococcus epidermidis} SCOP: d.52.8.1

Probab=99.93  E-value=1.1e-25  Score=165.03  Aligned_cols=73  Identities=25%  Similarity=0.280  Sum_probs=68.7

Q ss_pred             ccHHHHHHHHHHHHHHHhhccccCcCCcccEEEEEecCCeEEEEEeecCCCch---hhHHHHHHHHHHHhCCCceEEEec
Q 030939           81 LTEDNVRQVIADARGELAQLFDTSVGITGVAELAELDGPFVKIRLRGRFWHKR---STVIARLANYLKQRIPEILEVDIE  157 (169)
Q Consensus        81 LteE~Ve~VLeeiRP~L~~Df~~~vGiGGDVELVdvdgg~VkVrL~GaC~~Cp---~Tlk~gIE~~Lke~IPEI~~V~i~  157 (169)
                      -+.++|+++|++|||+|++|       ||||||+++++++|+|||+|||++||   +|||++||+.|++++|||+.|+.+
T Consensus         7 ~~~~~I~~~L~~IRP~L~~d-------GGdvelv~v~~g~V~V~L~GaC~gCpss~~TLk~gIE~~L~~~vPev~~V~~v   79 (88)
T 1xhj_A            7 TMFDQVAEVIERLRPFLLRD-------GGDCTLVDVEDGIVKLQLHGACGTCPSSTITLKAGIERALHEEVPGVIEVEQV   79 (88)
T ss_dssp             CHHHHHHHHHHHHHHHHHHH-------SCEEEEEECCSSEEEEEEESSCCSSCHHHHHHHHHHHHHHHHHSTTCCEEEEE
T ss_pred             HHHHHHHHHHHHhcHHHHhc-------CCeEEEEEEECCEEEEEEeecCCCCcchHHHHHHHHHHHHHHhCCCceEEEec
Confidence            35899999999999999999       99999999999999999999999999   899999999999999999999876


Q ss_pred             CCc
Q 030939          158 DEK  160 (169)
Q Consensus       158 d~~  160 (169)
                      ..+
T Consensus        80 ~~~   82 (88)
T 1xhj_A           80 FLE   82 (88)
T ss_dssp             ECC
T ss_pred             ccc
Confidence            543

>1th5_A NIFU1; iron-sulfur cluster binding, structural genomics, program for RICE genome research, unknown function; NMR {Oryza sativa} SCOP: d.52.8.1

Probab=99.92  E-value=2.9e-26  Score=163.39  Aligned_cols=71  Identities=34%  Similarity=0.487  Sum_probs=68.5

Q ss_pred             ccccHHHHHHHHHHHHHHHhhccccCcCCc-ccEEEEEecCCeEEEEEeecCCCchhhHHHHHHHHHHHhCCCceEEEec
Q 030939           79 LDLTEDNVRQVIADARGELAQLFDTSVGIT-GVAELAELDGPFVKIRLRGRFWHKRSTVIARLANYLKQRIPEILEVDIE  157 (169)
Q Consensus        79 l~LteE~Ve~VLeeiRP~L~~Df~~~vGiG-GDVELVdvdgg~VkVrL~GaC~~Cp~Tlk~gIE~~Lke~IPEI~~V~i~  157 (169)
                      +++++++|+++|++|||+|++|       | ||+||+++++++|+|||+|+|++| +|++++||+.|++++|||++|+.+
T Consensus         2 ~~~~~~~V~~~L~~iRP~L~~d-------GGGdvelv~v~~g~V~v~l~GaC~gc-~Tlk~gIe~~L~~~vpei~~V~~v   73 (74)
T 1th5_A            2 LELNEENVEKVLNEIRPYLAGT-------GGGGLQFLMIKGPIVKVRLTGPAAVV-RTVRIAVSKKLREKIPSIQIVQLL   73 (74)
T ss_dssp             CCCSHHHHHHHHTTTHHHHTTT-------TCCCCCCCEEETTEEEECCCSSSSSS-SSHHHHHHHHHHHHCTTCSEEEEC
T ss_pred             hhHHHHHHHHHHHHHhHHHHhc-------CCCcEEEEEEeCCEEEEEEecCCcch-HHHHHHHHHHHHHHCCCCcEEEeC
Confidence            5789999999999999999999       7 999999999999999999999999 999999999999999999999876

>1veh_A NIFU-like protein hirip5; structural genomics, mouse cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.52.8.1

Probab=99.90  E-value=5.2e-24  Score=157.05  Aligned_cols=73  Identities=18%  Similarity=0.231  Sum_probs=68.3

Q ss_pred             ccccHHHHHHHHHH-HHHHHhhccccCcCCcccEEEEEecCCeEEEEEeecCCCch---hhHHHHHHHHHHHhCCCceEE
Q 030939           79 LDLTEDNVRQVIAD-ARGELAQLFDTSVGITGVAELAELDGPFVKIRLRGRFWHKR---STVIARLANYLKQRIPEILEV  154 (169)
Q Consensus        79 l~LteE~Ve~VLee-iRP~L~~Df~~~vGiGGDVELVdvdgg~VkVrL~GaC~~Cp---~Tlk~gIE~~Lke~IPEI~~V  154 (169)
                      -+-..+.|+++|++ |||+|++|       ||||||+++++++|+|||+|+|.+||   +|||++||+.|++++|||++|
T Consensus        11 d~~~~~~I~~~L~~~IRP~L~~d-------GGdvelv~v~~g~V~v~l~GaC~gC~ss~~Tlk~gIE~~L~~~vpev~~V   83 (92)
T 1veh_A           11 DDEVVAMIKELLDTRIRPTVQED-------GGDVIYRGFEDGIVRLKLQGSCTSCPSSIITLKSGIQNMLQFYIPEVEGV   83 (92)
T ss_dssp             CCHHHHHHHHHHHHTTHHHHHHH-------SCCCCEEEEETTEEEECCCCCCCCCHHHHHHTHHHHHHHHHHHCSSCCCE
T ss_pred             chHHHHHHHHHHHHHhhHHHHhc-------CCeEEEEEEeCCEEEEEEeecCCCCCCcHHHHHHHHHHHHHHHCCCCCEE
Confidence            34458899999996 99999999       99999999999999999999999999   899999999999999999999


Q ss_pred             EecC
Q 030939          155 DIED  158 (169)
Q Consensus       155 ~i~d  158 (169)
                      +.+.
T Consensus        84 ~~v~   87 (92)
T 1veh_A           84 EQVS   87 (92)
T ss_dssp             EECS
T ss_pred             EEcC
Confidence            9764

>2z51_A NIFU-like protein 2, chloroplast; CNFU, iron-sulfur cluster biosynthesis, metal transport; 1.35A {Arabidopsis thaliana} PDB: 2jnv_A

Probab=99.89  E-value=1.5e-23  Score=165.94  Aligned_cols=76  Identities=30%  Similarity=0.469  Sum_probs=71.1

Q ss_pred             CCCCCccccHHHHHHHHHHHHHHHhh-ccccCcCCcccEEEEEecCCeEEEEEeecCCCchhhHHHHHHHHHHHhCCCce
Q 030939           74 VPPPPLDLTEDNVRQVIADARGELAQ-LFDTSVGITGVAELAELDGPFVKIRLRGRFWHKRSTVIARLANYLKQRIPEIL  152 (169)
Q Consensus        74 ~~~~~l~LteE~Ve~VLeeiRP~L~~-Df~~~vGiGGDVELVdvdgg~VkVrL~GaC~~Cp~Tlk~gIE~~Lke~IPEI~  152 (169)
                      .+...+++|+|+|+++||++||+|++ |       |||+|||+++|++|+|||+|+|++| +|++++||+.||+++|||+
T Consensus        78 ~~~e~l~L~~~~v~~~L~~iRP~L~~~d-------GGdvelv~v~~~~v~v~l~Gac~~~-~Tlk~~Ie~~l~e~vP~i~  149 (154)
T 2z51_A           78 DEETGLELNEENIEKVLEEIRPYLIGTA-------DGSLDLVEIEDPIVKIRITGPAAGV-MTVRVAVTQKLREKIPSIA  149 (154)
T ss_dssp             SSCCSCCSSHHHHHHHHHHHGGGCCGGG-------CCEEEEEEEETTEEEEEEESGGGGC-HHHHHHHHHHHHHHCTTCC
T ss_pred             CchhhhHHHHHHHHHHHHHHHHHhhhcC-------CCCeEEEEEECCEEEEEEecCCccc-HhHHHHHHHHHHHHCCCcc
Confidence            34556789999999999999999998 9       9999999999999999999999999 8999999999999999999


Q ss_pred             EEEec
Q 030939          153 EVDIE  157 (169)
Q Consensus       153 ~V~i~  157 (169)
                      +|+..
T Consensus       150 ~V~~~  154 (154)
T 2z51_A          150 AVQLI  154 (154)
T ss_dssp             EEEEC
T ss_pred             EEEeC
Confidence            99863

>2z51_A NIFU-like protein 2, chloroplast; CNFU, iron-sulfur cluster biosynthesis, metal transport; 1.35A {Arabidopsis thaliana} PDB: 2jnv_A

Probab=99.89  E-value=2.6e-23  Score=164.65  Aligned_cols=73  Identities=32%  Similarity=0.447  Sum_probs=69.9

Q ss_pred             ccccHHHHHHHHHHHHHHHhhccccCcCCcccEEEEEecCCeEEEEEeecCCCch---hhHHHHHHHHHHHhCCCceEEE
Q 030939           79 LDLTEDNVRQVIADARGELAQLFDTSVGITGVAELAELDGPFVKIRLRGRFWHKR---STVIARLANYLKQRIPEILEVD  155 (169)
Q Consensus        79 l~LteE~Ve~VLeeiRP~L~~Df~~~vGiGGDVELVdvdgg~VkVrL~GaC~~Cp---~Tlk~gIE~~Lke~IPEI~~V~  155 (169)
                      +++++|+|+++|++|||+|++|       ||||||+++++++|+|||+|+|++||   +|++.+||+.|++++||++.|+
T Consensus         2 ~~~~~e~v~~~L~~iRP~l~~d-------GGdvelv~v~~~~V~v~l~GaC~gC~ss~~Tlk~~Ie~~L~~~vpev~~V~   74 (154)
T 2z51_A            2 VPLTEENVESVLDEIRPYLMSD-------GGNVALHEIDGNVVRVKLQGACGSCPSSTMTMKMGIERRLMEKIPEIVAVE   74 (154)
T ss_dssp             CCSCHHHHHHHHHHHHHHHHHT-------TEEEEEEEEETTEEEEEEEHHHHTCHHHHHHHHHHHHHHHHHHCTTCCEEE
T ss_pred             CcchHHHHHHHHHHhChHHHhc-------CCeEEEEEEECCEEEEEEECCCCCCCccHhHHHHHHHHHHHHhCCCceEEE
Confidence            4689999999999999999999       99999999999999999999999999   7999999999999999999999


Q ss_pred             ecC
Q 030939          156 IED  158 (169)
Q Consensus       156 i~d  158 (169)
                      .+.
T Consensus        75 ~v~   77 (154)
T 2z51_A           75 ALP   77 (154)
T ss_dssp             ECC
T ss_pred             Ecc
Confidence            764

>3cq1_A Putative uncharacterized protein TTHB138; DTDP-4-keto-L-rhamnose reductase, plasmid, oxidoreductase, structural genomics, NPPSFA; 1.90A {Thermus thermophilus} PDB: 2cu6_A 3cq2_A 3cq3_A*

Probab=98.38  E-value=5.1e-07  Score=65.07  Aligned_cols=72  Identities=18%  Similarity=0.140  Sum_probs=61.4

Q ss_pred             ccHHHHHHHHHHH-HHHHhhccccCcCCcccEEEEEecCCeEEEEEeecCCCch--hhHHHHHHHHHHHhCCCceEEEec
Q 030939           81 LTEDNVRQVIADA-RGELAQLFDTSVGITGVAELAELDGPFVKIRLRGRFWHKR--STVIARLANYLKQRIPEILEVDIE  157 (169)
Q Consensus        81 LteE~Ve~VLeei-RP~L~~Df~~~vGiGGDVELVdvdgg~VkVrL~GaC~~Cp--~Tlk~gIE~~Lke~IPEI~~V~i~  157 (169)
                      .++++|.++|.++ -|.|..+    +-=-|-|.=|+++|+.|.|.|+-.+.+||  .+++..|+++|+ .+|++.+|++.
T Consensus         6 ~~~~~V~~aL~~V~DPel~~~----iv~lG~V~~v~v~~~~V~v~l~lt~~~cp~~~~l~~~i~~al~-~l~gv~~V~V~   80 (103)
T 3cq1_A            6 PLEAQAWALLEAVYDPELGLD----VVNLGLIYDLVVEPPRAYVRMTLTTPGCPLHDSLGEAVRQALS-RLPGVEEVEVE   80 (103)
T ss_dssp             HHHHHHHHHHTTCBCTTTCSB----TTTTTCEEEEEEETTEEEEEECCSSSSCCSSCHHHHHHHHHHH-TSTTCCEEEEE
T ss_pred             hHHHHHHHHHhCCCCCCCCcC----chhcCceEEEEEECCEEEEEEEECCCCCcHHHHHHHHHHHHHH-hCCCceeEEEE
Confidence            4688999999986 8999888    11137888899998999999999999999  789999999997 68999888764

>1uwd_A Hypothetical protein TM0487; similar to PAAD protein, alpha/beta fold,structural genomics joint center for structural genomics, JCSG; NMR {Thermotoga maritima} SCOP: d.52.8.2 PDB: 1wcj_A

Probab=98.02  E-value=7.7e-06  Score=58.73  Aligned_cols=72  Identities=18%  Similarity=0.191  Sum_probs=59.3

Q ss_pred             ccHHHHHHHHHHH-HHHHhhccccCcCCcccEEEEEecC-CeEEEEEeecCCCch--hhHHHHHHHHHHHhCCCceEEEe
Q 030939           81 LTEDNVRQVIADA-RGELAQLFDTSVGITGVAELAELDG-PFVKIRLRGRFWHKR--STVIARLANYLKQRIPEILEVDI  156 (169)
Q Consensus        81 LteE~Ve~VLeei-RP~L~~Df~~~vGiGGDVELVdvdg-g~VkVrL~GaC~~Cp--~Tlk~gIE~~Lke~IPEI~~V~i  156 (169)
                      +++++|.++|.++ =|.|..+    +-=-|-|.=|++++ +.|.|.|+-.+.+||  ..++..|+++|+ .+|++.+|++
T Consensus         6 ~~~~~V~~aL~~V~DPel~~~----iv~lG~V~~v~v~~~~~V~v~l~lt~~~cp~~~~l~~~i~~al~-~l~gv~~v~V   80 (103)
T 1uwd_A            6 VTKEDVLNALKNVIDFELGLD----VVSLGLVYDIQIDDQNNVKVLMTMTTPMCPLAGMILSDAEEAIK-KIEGVNNVEV   80 (103)
T ss_dssp             CCHHHHHHHHTTCBCTTTSSB----TTTTTCCCCEEECTTCEEEEEECCSSSCCSSHHHHHHHHHHHHH-TSSSCCEEEE
T ss_pred             chHHHHHHHHcCCCCCCCCcC----hhhcCCeeEEEEcCCCEEEEEEEECCCCCcHHHHHHHHHHHHHH-hCCCcceEEE
Confidence            5789999999998 4998887    11136677788875 899999999999999  789999999997 5899988876


Q ss_pred             c
Q 030939          157 E  157 (169)
Q Consensus       157 ~  157 (169)
                      .
T Consensus        81 ~   81 (103)
T 1uwd_A           81 E   81 (103)
T ss_dssp             E
T ss_pred             E
Confidence            4

>3lno_A Putative uncharacterized protein; alpha-beta fold, structural genomics, center for structural genomics of infectious diseases, csgid; 2.10A {Bacillus anthracis} SCOP: d.52.8.0

Probab=97.62  E-value=3.7e-05  Score=56.05  Aligned_cols=74  Identities=14%  Similarity=0.160  Sum_probs=59.6

Q ss_pred             cccHHHHHHHHHHH-HHHHhhccccCcCCcccEEEEEecC-CeEEEEEeecCCCch--hhHHHHHHHHHHHhCCCceEEE
Q 030939           80 DLTEDNVRQVIADA-RGELAQLFDTSVGITGVAELAELDG-PFVKIRLRGRFWHKR--STVIARLANYLKQRIPEILEVD  155 (169)
Q Consensus        80 ~LteE~Ve~VLeei-RP~L~~Df~~~vGiGGDVELVdvdg-g~VkVrL~GaC~~Cp--~Tlk~gIE~~Lke~IPEI~~V~  155 (169)
                      +.++++|.++|..+ -|.+..+    +.=-|-|.=|++++ +.|.|.|+-.+.+||  ..++..|+++|++.+|++.+|+
T Consensus         7 ~~~~~~V~~aL~~V~DPe~~~~----Iv~lG~V~~I~v~~~~~V~V~ltlt~p~cp~~~~i~~~i~~al~~~l~Gv~~V~   82 (108)
T 3lno_A            7 EAFENKLYANLEAVIDPELGVD----IVNLGLVYDVTADENNNAVITMTMTSIGCPMAGQIVSDVKKVLSTNVPEVNEIE   82 (108)
T ss_dssp             HHHHHHHHHHGGGCEETTTTEE----HHHHTCEEEEEECTTCCEEEEECCSCTTCTTHHHHHHHHHHHHHHHCTTCCCEE
T ss_pred             hhhHHHHHHHHcCCCCCCCCCC----HHHcCCceEEEECCCCeEEEEEEECCCCCcHHHHHHHHHHHHHHHhCCCCceEE
Confidence            35678888888776 7777655    11147788899975 999999999999999  7889999999988899998887


Q ss_pred             ec
Q 030939          156 IE  157 (169)
Q Consensus       156 i~  157 (169)
                      +.
T Consensus        83 V~   84 (108)
T 3lno_A           83 VN   84 (108)
T ss_dssp             EE
T ss_pred             EE
Confidence            64

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	169
d1th5a1	73	d.52.8.1 (A:154-226) NifU-like protein 1, NIFUL1 {	2e-10

>d1th5a1 d.52.8.1 (A:154-226) NifU-like protein 1, NIFUL1 {Rice (Oryza sativa) [TaxId: 4530]} Length = 73

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: Fe-S cluster assembly (FSCA) domain-like
family: NifU C-terminal domain-like
domain: NifU-like protein 1, NIFUL1
species: Rice (Oryza sativa) [TaxId: 4530]

 Score = 52.0 bits (125), Expect = 2e-10
 Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 7/78 (8%)

Query: 79  LDLTEDNVRQVIADARGELAQLFDTSVGITGVAELAELDGPFVKIRLRGRFWHKRSTVIA 138
           L+L E+NV +V+ + R  LA          G  +   + GP VK+RL G       TV  
Sbjct: 1   LELNEENVEKVLNEIRPYLAGTGG------GGLQFLMIKGPIVKVRLTGPAAV-VRTVRI 53

Query: 139 RLANYLKQRIPEILEVDI 156
            ++  L+++IP I  V +
Sbjct: 54  AVSKKLREKIPSIQIVQL 71

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	169
d1th5a1	73	NifU-like protein 1, NIFUL1 {Rice (Oryza sativa) [	99.93
d1xhja_	88	Nitrogen fixation protein NifU homolog SE0630 {Sta	99.91
d1veha_	92	HIRA-interacting protein 5, HIRIP5 {Mouse (Mus mus	99.88
d1uwda_	102	Hypothetical protein TM0487 {Thermotoga maritima [	97.04
d2cu6a1	91	Hypothetical protein TTHB138 {Thermus thermophilus	96.93
d1q8la_	84	Menkes copper-transporting ATPase {Human (Homo sap	83.35
d1p6ta1	72	Potential copper-translocating P-type ATPase CopA	82.22

>d1th5a1 d.52.8.1 (A:154-226) NifU-like protein 1, NIFUL1 {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: Fe-S cluster assembly (FSCA) domain-like
family: NifU C-terminal domain-like
domain: NifU-like protein 1, NIFUL1
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=99.93  E-value=1.4e-27  Score=168.19  Aligned_cols=72  Identities=33%  Similarity=0.473  Sum_probs=69.0

Q ss_pred             ccccHHHHHHHHHHHHHHHh-hccccCcCCcccEEEEEecCCeEEEEEeecCCCchhhHHHHHHHHHHHhCCCceEEEec
Q 030939           79 LDLTEDNVRQVIADARGELA-QLFDTSVGITGVAELAELDGPFVKIRLRGRFWHKRSTVIARLANYLKQRIPEILEVDIE  157 (169)
Q Consensus        79 l~LteE~Ve~VLeeiRP~L~-~Df~~~vGiGGDVELVdvdgg~VkVrL~GaC~~Cp~Tlk~gIE~~Lke~IPEI~~V~i~  157 (169)
                      |+|++|+|+++|+++||+|+ .|       ||||||++++||+|+|||+|+|++| +|++.+||+.|++++|||..|++.
T Consensus         1 mel~ee~V~~vL~eirP~l~a~d-------GGdvelv~i~~~~v~v~l~GaC~gC-~Tl~~gIe~~L~~~iPei~~V~~v   72 (73)
T d1th5a1           1 LELNEENVEKVLNEIRPYLAGTG-------GGGLQFLMIKGPIVKVRLTGPAAVV-RTVRIAVSKKLREKIPSIQIVQLL   72 (73)
T ss_dssp             CCCSHHHHHHHHTTTHHHHTTTT-------CCCCCCCEEETTEEEECCCSSSSSS-SSHHHHHHHHHHHHCTTCSEEEEC
T ss_pred             CCCCHHHHHHHHHHhcccccccC-------CceEEEEEecCCEEEEEecCCCccc-chHHHHHHHHHHHHCCCccEEEec
Confidence            68999999999999999998 59       9999999999999999999999999 699999999999999999999987


Q ss_pred             C
Q 030939          158 D  158 (169)
Q Consensus       158 d  158 (169)
                      +
T Consensus        73 ~   73 (73)
T d1th5a1          73 S   73 (73)
T ss_dssp             C
T ss_pred             C
Confidence            5

>d1xhja_ d.52.8.1 (A:) Nitrogen fixation protein NifU homolog SE0630 {Staphylococcus epidermidis [TaxId: 1282]}

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: Fe-S cluster assembly (FSCA) domain-like
family: NifU C-terminal domain-like
domain: Nitrogen fixation protein NifU homolog SE0630
species: Staphylococcus epidermidis [TaxId: 1282]

Probab=99.91  E-value=9.7e-25  Score=158.09  Aligned_cols=71  Identities=25%  Similarity=0.288  Sum_probs=67.8

Q ss_pred             cHHHHHHHHHHHHHHHhhccccCcCCcccEEEEEecCCeEEEEEeecCCCch---hhHHHHHHHHHHHhCCCceEEEecC
Q 030939           82 TEDNVRQVIADARGELAQLFDTSVGITGVAELAELDGPFVKIRLRGRFWHKR---STVIARLANYLKQRIPEILEVDIED  158 (169)
Q Consensus        82 teE~Ve~VLeeiRP~L~~Df~~~vGiGGDVELVdvdgg~VkVrL~GaC~~Cp---~Tlk~gIE~~Lke~IPEI~~V~i~d  158 (169)
                      +.++|+++||+|||+|++|       ||||||++++++.|+|||+|+|.+||   +|++++||+.|++++||+++|+.+.
T Consensus         8 l~~~I~~vLe~IRP~l~~d-------GGdvelv~v~~g~V~v~l~GaC~gC~~s~~Tlk~~Ie~~L~~~vpev~~V~~V~   80 (88)
T d1xhja_           8 MFDQVAEVIERLRPFLLRD-------GGDCTLVDVEDGIVKLQLHGACGTCPSSTITLKAGIERALHEEVPGVIEVEQVF   80 (88)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-------SCEEEEEECCSSEEEEEEESSCCSSCHHHHHHHHHHHHHHHHHSTTCCEEEEEE
T ss_pred             HHHHHHHHHHHhhHHHHhC-------CCcEEEEeccCCEEEEEecCCCCCCccHHHHHHHHHHHHHHHHCCCCceEEEec
Confidence            5899999999999999999       99999999999999999999999999   8999999999999999999999764


Q ss_pred             C
Q 030939          159 E  159 (169)
Q Consensus       159 ~  159 (169)
                      .
T Consensus        81 ~   81 (88)
T d1xhja_          81 L   81 (88)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d1veha_ d.52.8.1 (A:) HIRA-interacting protein 5, HIRIP5 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: Fe-S cluster assembly (FSCA) domain-like
family: NifU C-terminal domain-like
domain: HIRA-interacting protein 5, HIRIP5
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.88  E-value=1.5e-23  Score=152.90  Aligned_cols=74  Identities=18%  Similarity=0.224  Sum_probs=68.4

Q ss_pred             ccccHHHHHHHHHH-HHHHHhhccccCcCCcccEEEEEecCCeEEEEEeecCCCch---hhHHHHHHHHHHHhCCCceEE
Q 030939           79 LDLTEDNVRQVIAD-ARGELAQLFDTSVGITGVAELAELDGPFVKIRLRGRFWHKR---STVIARLANYLKQRIPEILEV  154 (169)
Q Consensus        79 l~LteE~Ve~VLee-iRP~L~~Df~~~vGiGGDVELVdvdgg~VkVrL~GaC~~Cp---~Tlk~gIE~~Lke~IPEI~~V  154 (169)
                      -+-..++|+++|++ |||+|++|       ||||+|++++++.|+|+|+|+|.+||   +||+.+||+.|++++|||+.|
T Consensus        11 d~e~~~~I~~vL~~~IrP~l~~d-------GGdv~lv~v~~g~V~v~l~GaC~gCp~s~~Tlk~~Ie~~L~~~vpev~~V   83 (92)
T d1veha_          11 DDEVVAMIKELLDTRIRPTVQED-------GGDVIYRGFEDGIVRLKLQGSCTSCPSSIITLKSGIQNMLQFYIPEVEGV   83 (92)
T ss_dssp             CCHHHHHHHHHHHHTTHHHHHHH-------SCCCCEEEEETTEEEECCCCCCCCCHHHHHHTHHHHHHHHHHHCSSCCCE
T ss_pred             cHHHHHHHHHHHHHhcChHHHHc-------CCceEEEEeeCCeEEEEEccCCCCChhHHHHHHHHHHHHHHHHCCCcceE
Confidence            34467899999985 99999999       99999999999999999999999999   899999999999999999999


Q ss_pred             EecCC
Q 030939          155 DIEDE  159 (169)
Q Consensus       155 ~i~d~  159 (169)
                      +.++.
T Consensus        84 ~~v~~   88 (92)
T d1veha_          84 EQVSG   88 (92)
T ss_dssp             EECSC
T ss_pred             EEcCC
Confidence            87654

>d1uwda_ d.52.8.2 (A:) Hypothetical protein TM0487 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: Fe-S cluster assembly (FSCA) domain-like
family: PaaD-like
domain: Hypothetical protein TM0487
species: Thermotoga maritima [TaxId: 2336]

Probab=97.04  E-value=0.00037  Score=49.50  Aligned_cols=74  Identities=18%  Similarity=0.188  Sum_probs=58.6

Q ss_pred             cccHHHHHHHHHHH-HHHHhhccccCcCCcccEEEEEecC-CeEEEEEeecCCCch--hhHHHHHHHHHHHhCCCceEEE
Q 030939           80 DLTEDNVRQVIADA-RGELAQLFDTSVGITGVAELAELDG-PFVKIRLRGRFWHKR--STVIARLANYLKQRIPEILEVD  155 (169)
Q Consensus        80 ~LteE~Ve~VLeei-RP~L~~Df~~~vGiGGDVELVdvdg-g~VkVrL~GaC~~Cp--~Tlk~gIE~~Lke~IPEI~~V~  155 (169)
                      ++|+++|.++|..+ =|++..| =.+.|   =|.=|.|++ |.|+|.|+=.+.+||  ..+...++++|+ ++|+|.+|+
T Consensus         4 ~vt~~~V~~aL~~V~DPe~~~d-IV~LG---lV~~i~I~~~g~V~v~~~lt~~~Cp~~~~i~~~i~~al~-~~~gV~~v~   78 (102)
T d1uwda_           4 KVTKEDVLNALKNVIDFELGLD-VVSLG---LVYDIQIDDQNNVKVLMTMTTPMCPLAGMILSDAEEAIK-KIEGVNNVE   78 (102)
T ss_dssp             CCCHHHHHHHHTTCBCTTTSSB-TTTTT---CCCCEEECTTCEEEEEECCSSSCCSSHHHHHHHHHHHHH-TSSSCCEEE
T ss_pred             ccCHHHHHHHHhCCCCCCCCcc-eeecc---ceeeEEeccccceEEEEecCCCCCchHHHHHHHHHHHHH-cCCCCceEE
Confidence            57899999999886 7888766 12333   344456776 799999999999999  688999999999 599998887


Q ss_pred             ecC
Q 030939          156 IED  158 (169)
Q Consensus       156 i~d  158 (169)
                      ++=
T Consensus        79 V~i   81 (102)
T d1uwda_          79 VEL   81 (102)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            643

>d2cu6a1 d.52.8.2 (A:6-96) Hypothetical protein TTHB138 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: Fe-S cluster assembly (FSCA) domain-like
family: PaaD-like
domain: Hypothetical protein TTHB138
species: Thermus thermophilus [TaxId: 274]

Probab=96.93  E-value=0.00069  Score=46.69  Aligned_cols=71  Identities=17%  Similarity=0.156  Sum_probs=57.5

Q ss_pred             cHHHHHHHHHHH-HHHHhhccccCcCCcccEEEEEecCCeEEEEEeecCCCch--hhHHHHHHHHHHHhCCCceEEEec
Q 030939           82 TEDNVRQVIADA-RGELAQLFDTSVGITGVAELAELDGPFVKIRLRGRFWHKR--STVIARLANYLKQRIPEILEVDIE  157 (169)
Q Consensus        82 teE~Ve~VLeei-RP~L~~Df~~~vGiGGDVELVdvdgg~VkVrL~GaC~~Cp--~Tlk~gIE~~Lke~IPEI~~V~i~  157 (169)
                      ++++|.++|..+ =|.+..| =.+   =|=|.=++++++.|+|.|.=...+||  ..+...++++|+ .+|++.+|++.
T Consensus         2 le~~v~eaL~~V~DPe~~~d-Iv~---LGlV~~i~i~~~~v~v~l~lt~~~cp~~~~i~~~i~~al~-~l~gv~~V~V~   75 (91)
T d2cu6a1           2 LEAQAWALLEAVYDPELGLD-VVN---LGLIYDLVVEPPRAYVRMTLTTPGCPLHDSLGEAVRQALS-RLPGVEEVEVE   75 (91)
T ss_dssp             HHHHHHHHHTTCEETTTTEE-TTT---TTCEEEEEEETTEEEEEECCSSSSCCSSCHHHHHHHHHHH-TSTTCCEEEEE
T ss_pred             hHHHHHHHHhcCCCCCCCcC-hhh---ccceeEEEEeccccEEEEEcCCCCCcHHHHHHHHHHHHHH-cCCCCceEEEE
Confidence            378888888876 7877766 112   35677788899999999999999999  788889999997 59999888764

>d1q8la_ d.58.17.1 (A:) Menkes copper-transporting ATPase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Menkes copper-transporting ATPase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.35  E-value=0.75  Score=30.04  Aligned_cols=35  Identities=11%  Similarity=0.286  Sum_probs=26.8

Q ss_pred             CCeEEEEEee-cCCCchhhHHHHHHHHHHHhCCCceEEEec
Q 030939          118 GPFVKIRLRG-RFWHKRSTVIARLANYLKQRIPEILEVDIE  157 (169)
Q Consensus       118 gg~VkVrL~G-aC~~Cp~Tlk~gIE~~Lke~IPEI~~V~i~  157 (169)
                      +..|.+++.| .|.+|..+++    +.|+ ++|+|..|.+.
T Consensus         8 ~~~v~l~V~GMtC~~C~~~Ie----~~l~-~~~GV~~v~vn   43 (84)
T d1q8la_           8 EVVLKMKVEGMTCHSCTSTIE----GKIG-KLQGVQRIKVS   43 (84)
T ss_dssp             CEEEEEEECCTTTCSSCHHHH----HHHH-TCTTEEEEEEC
T ss_pred             CEEEEEEECCeEcHHHHHHHH----HHHh-cCCCceEEEEE
Confidence            3567889999 8999997655    4444 59999988874

>d1p6ta1 d.58.17.1 (A:1-72) Potential copper-translocating P-type ATPase CopA (YvgX) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Potential copper-translocating P-type ATPase CopA (YvgX)
species: Bacillus subtilis [TaxId: 1423]

Probab=82.22  E-value=0.59  Score=29.35  Aligned_cols=35  Identities=11%  Similarity=0.264  Sum_probs=26.7

Q ss_pred             CCeEEEEEee-cCCCchhhHHHHHHHHHHHhCCCceEEEec
Q 030939          118 GPFVKIRLRG-RFWHKRSTVIARLANYLKQRIPEILEVDIE  157 (169)
Q Consensus       118 gg~VkVrL~G-aC~~Cp~Tlk~gIE~~Lke~IPEI~~V~i~  157 (169)
                      ...+.+++.| .|.+|..++.    +.|++ +|+|.+|.+.
T Consensus         5 ~~~~~l~V~Gm~C~~C~~~Ie----~~l~~-~~gV~~v~v~   40 (72)
T d1p6ta1           5 QKEIAMQVSGMTCAACAARIE----KGLKR-MPGVTDANVN   40 (72)
T ss_dssp             CEEEEEEEESCCSSHHHHHHH----HHHTT-SSSEEEEEEE
T ss_pred             ceEEEEEECCeecHHHHHHHH----HHHHc-CCCcEEEEEE
Confidence            3568899999 8999987655    55554 7999988764