Citrus Sinensis ID: 030974

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------17
Protein Sequence
MSFTITTPNVQSSLQSTKFDTHPCSKSLKQGSRTKLFNGWQQLEGSKKGRACLNWPLIAILVEHAEGQRDLITEKSIWHLSDQAIKNVYLFYIMFTCWGCMFFSATKDPYYDSDAYREDGGDGTGHWFYEKQEEIEEAARAELWREELIEEIEQKVGGLQELEEAGRK
Secondary Structure (PSIPRED)
ccEEEEccccccccccccccccccccccccccccccccccHHHcccccccccccHHHHHHHHHHHHccccEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccEEEcccccccccccccccccccccccccccccccccccEEccccEccccccHHHHHHHHHHHHcccHEEEEcEEEEccHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHcccccccccEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHccc
Coil and Loop (DISEMBL)
msftittpnvqsslqstkfdthpcskslkqgsrtkLFNGWqqlegskkgraclnwPLIAILVEHAEgqrdlitekSIWHLSDQAIKNVYLFYIMFTCwgcmffsatkdpyydsdayredggdgtghwFYEKQEEIEEAARAELWREELIEEIEQKVGGLQELEEAGRK
Flexible Loop (DISEMBL)
msftittpnvqsslqstkfdthpcskslkqgsrtKLFNGWQQLEGSKKGRACLNWPLIAILVEHAEGQRDLITEKSIWHLSDQAIKNVYLFYIMFTCWGCMFFSATKDPYYDSDAYREDGGDGTGHWFYEKQEEIEEAARAELWREELIEEIEqkvgglqeleeagrk
Low Complexity Region (SEG)
MSFTITTPNVQSSLQSTKFDTHPCSKSLKQGSRTKLFNGWQQLEGSKKGRACLNWPLIAILVEHAEGQRDLITEKSIWHLSDQAIKNVYLFYIMFTCWGCMFFSATKDPYYDSDAYREDGGDGTGHWFYekqeeieeaaraelwreelieeieqkVGGLQELEEAGRK
Disordered region (IsUnstruct)
***********************************LFNGWQQLEGSKKGRACLNWPLIAILVEHAEGQRDLITEKSIWHLSDQAIKNVYLFYIMFTCWGCMFFSATKDPYYDSDAYREDGGDGTGHWFYEKQEEIEEAARAELWREELIEEI****************
Disordered Region (DISOPRED)
*SFT***PNV********************************************WPLIAILVEHAEGQRDLITEKSIWHLSDQAIKNVYLFYIMFTCWGCMFFSATKDPYYDSDAYREDGGDGTGHWFYEKQEEIE**ARAELWREELIEEIEQKV************
Disordered Region (DISEMBL)
****************************KQGSRTKLFNGWQQLEGSKKGRACLNWPLIAILVEHAEGQRDLITEKSIWHLSDQAIKNVYLFYIMFTCWGCMFFSATKDPYYDSDAYREDGGDGTGHWFYEKQEEIEEAARAELWREELIEEIEQKVGGLQELEEAGRK
Disordered Region (DISPRO)
*SF**T*********************************WQQLEGSKKGRACLNWPLIAILVEHAEGQRDLITEKSIWHLSDQAIKNVYLFYIMFTCWGCMFFSATKDPYYDSDAYREDGGDGTGHWFYEKQEEIEEAARAELWREELIEEIEQKVGGLQELE*****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSFTITTPNVQSSLQSTKFDTHPCSKSLKQGSRTKLFNGWQQLEGSKKGRACLNWPLIAILVEHAEGQRDLITEKSIWHLSDQAIKNVYLFYIMFTCWGCMFFSATKDPYYDSDAYREDGGDGTGHWFYEKQEEIEEAARAELWxxxxxxxxxxxxxxxxxxxxxGRK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	168
359497630	181	PREDICTED: uncharacterized protein LOC10	1.0	0.928	0.704	1e-66
118486857	180	unknown [Populus trichocarpa]	0.988	0.922	0.693	3e-65
224119070	180	predicted protein [Populus trichocarpa]	0.988	0.922	0.693	3e-65
255547361	182	conserved hypothetical protein [Ricinus	1.0	0.923	0.676	5e-64
147832588	209	hypothetical protein VITISV_038217 [Viti	0.708	0.569	0.823	1e-53
255646889	183	unknown [Glycine max]	1.0	0.918	0.610	3e-52
356508539	183	PREDICTED: uncharacterized protein LOC10	1.0	0.918	0.610	4e-52
449440802	177	PREDICTED: uncharacterized protein LOC10	0.988	0.937	0.623	5e-52
356516818	183	PREDICTED: uncharacterized protein LOC10	1.0	0.918	0.604	1e-51
388504538	186	unknown [Lotus japonicus]	1.0	0.903	0.579	5e-50

>gi|359497630|ref|XP_003635591.1| PREDICTED: uncharacterized protein LOC100854331 [Vitis vinifera] gi|359497642|ref|XP_003635595.1| PREDICTED: uncharacterized protein LOC100854601 [Vitis vinifera] gi|296087032|emb|CBI33296.3| unnamed protein product [Vitis vinifera] gi|296088957|emb|CBI38523.3| unnamed protein product [Vitis vinifera]

 Score =  257 bits (656), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 124/176 (70%), Positives = 139/176 (78%), Gaps = 8/176 (4%)

Query: 1   MSFTITTPNVQSSL-QSTKFDTHPCSKSLKQGSRTKLFNGWQQLEGSKKGRACL------ 53
           M FTI  PN  +S  Q TK D  PCS+ L+Q S ++  NGW Q E SK  RA L      
Sbjct: 6   MGFTIMKPNFHNSYAQPTKMDISPCSRLLRQCSSSRFNNGWHQTESSKSKRASLCRVNAL 65

Query: 54  -NWPLIAILVEHAEGQRDLITEKSIWHLSDQAIKNVYLFYIMFTCWGCMFFSATKDPYYD 112
            +WPL+A+LVEH EGQRDLIT KSIWHL+D+ IKNVY FYIMFTCWGC FF +TKDPYYD
Sbjct: 66  PDWPLMAVLVEHVEGQRDLITHKSIWHLNDETIKNVYTFYIMFTCWGCCFFGSTKDPYYD 125

Query: 113 SDAYREDGGDGTGHWFYEKQEEIEEAARAELWREELIEEIEQKVGGLQELEEAGRK 168
           S+ YR+DGGDGTGHW YEKQE+IEEAARAELWREELIEEIEQKVGGL+ELEEAGRK
Sbjct: 126 SEQYRKDGGDGTGHWVYEKQEDIEEAARAELWREELIEEIEQKVGGLRELEEAGRK 181

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118486857|gb|ABK95263.1| unknown [Populus trichocarpa]

 Score =  252 bits (644), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 120/173 (69%), Positives = 141/173 (81%), Gaps = 7/173 (4%)

Query: 3   FTITTPNVQSSLQSTKFDTHPCSKSLKQGSRTKLFNGWQQLEGSKKGRACL-------NW 55
           FTIT P++ SSLQ TK D  PCS  L Q S   L +GW Q + S K RA L       +W
Sbjct: 8   FTITKPHMLSSLQKTKLDLKPCSGGLWQCSSDGLLSGWLQHKRSNKKRASLSKVNAFPDW 67

Query: 56  PLIAILVEHAEGQRDLITEKSIWHLSDQAIKNVYLFYIMFTCWGCMFFSATKDPYYDSDA 115
           PL+A++VEH EGQRDLIT KSIWHLSD+AIKNVY+FY+MFTCWGC+FF + KDPYYDS+A
Sbjct: 68  PLMAVMVEHIEGQRDLITHKSIWHLSDRAIKNVYVFYLMFTCWGCLFFGSMKDPYYDSEA 127

Query: 116 YREDGGDGTGHWFYEKQEEIEEAARAELWREELIEEIEQKVGGLQELEEAGRK 168
           YR+DGGDG+GHW Y+KQ++IEE+ARAELWREELIEEIEQKVGGL+ELEEAGRK
Sbjct: 128 YRKDGGDGSGHWVYDKQDDIEESARAELWREELIEEIEQKVGGLRELEEAGRK 180

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224119070|ref|XP_002317978.1| predicted protein [Populus trichocarpa] gi|222858651|gb|EEE96198.1| predicted protein [Populus trichocarpa]

 Score =  252 bits (644), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 120/173 (69%), Positives = 141/173 (81%), Gaps = 7/173 (4%)

Query: 3   FTITTPNVQSSLQSTKFDTHPCSKSLKQGSRTKLFNGWQQLEGSKKGRACL-------NW 55
           FTIT P++ SSLQ TK D  PCS  L Q S   L +GW Q + S K RA L       +W
Sbjct: 8   FTITKPHMLSSLQKTKLDLKPCSGELWQCSSDGLLSGWLQHKRSNKKRASLSKVNAFPDW 67

Query: 56  PLIAILVEHAEGQRDLITEKSIWHLSDQAIKNVYLFYIMFTCWGCMFFSATKDPYYDSDA 115
           PL+A++VEH EGQRDLIT KSIWHLSD+AIKNVY+FY+MFTCWGC+FF + KDPYYDS+A
Sbjct: 68  PLMAVMVEHIEGQRDLITHKSIWHLSDRAIKNVYVFYLMFTCWGCLFFGSMKDPYYDSEA 127

Query: 116 YREDGGDGTGHWFYEKQEEIEEAARAELWREELIEEIEQKVGGLQELEEAGRK 168
           YR+DGGDG+GHW Y+KQ++IEE+ARAELWREELIEEIEQKVGGL+ELEEAGRK
Sbjct: 128 YRKDGGDGSGHWVYDKQDDIEESARAELWREELIEEIEQKVGGLRELEEAGRK 180

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255547361|ref|XP_002514738.1| conserved hypothetical protein [Ricinus communis] gi|223546342|gb|EEF47844.1| conserved hypothetical protein [Ricinus communis]

 Score =  248 bits (634), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 119/176 (67%), Positives = 141/176 (80%), Gaps = 8/176 (4%)

Query: 1   MSFTITTPNVQSSLQSTKFDTHPCSKSLKQGSRTKLFNGWQQLEGSK-KGRACL------ 53
           M FTIT  ++ +S   TK D +P S+  KQ S ++ FNGWQQ EGSK K R  L      
Sbjct: 7   MGFTITKSHLHNSFSPTKLDLNPSSRLHKQCSSSRFFNGWQQAEGSKSKSRGSLSKVNAF 66

Query: 54  -NWPLIAILVEHAEGQRDLITEKSIWHLSDQAIKNVYLFYIMFTCWGCMFFSATKDPYYD 112
            +  L+A+LVEH EGQRDLIT K+IWHLSD+AIKNVY+FY+MFTCWGC+FF + KDP+YD
Sbjct: 67  PDLTLMAVLVEHMEGQRDLITNKTIWHLSDRAIKNVYVFYLMFTCWGCLFFGSMKDPFYD 126

Query: 113 SDAYREDGGDGTGHWFYEKQEEIEEAARAELWREELIEEIEQKVGGLQELEEAGRK 168
           S+ YR+DGGDGTGHW YEKQE+IEE+ARAELWREELIEEIEQKVGGL+ELEEAGRK
Sbjct: 127 SEEYRKDGGDGTGHWIYEKQEDIEESARAELWREELIEEIEQKVGGLRELEEAGRK 182

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147832588|emb|CAN77176.1| hypothetical protein VITISV_038217 [Vitis vinifera]

 Score =  214 bits (544), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 98/119 (82%), Positives = 108/119 (90%)

Query: 50  RACLNWPLIAILVEHAEGQRDLITEKSIWHLSDQAIKNVYLFYIMFTCWGCMFFSATKDP 109
            A  +WPL+A+LVEH EGQRDLIT KSIWHL+D+ IKNVY FYIMFTCWGC FF +TKDP
Sbjct: 91  NALPDWPLMAVLVEHVEGQRDLITHKSIWHLNDETIKNVYTFYIMFTCWGCCFFGSTKDP 150

Query: 110 YYDSDAYREDGGDGTGHWFYEKQEEIEEAARAELWREELIEEIEQKVGGLQELEEAGRK 168
           YYDS+ YR+DGGDGTGHW YEKQE+IEEAARAELWREELIEEIEQKVGGL+ELEEAGRK
Sbjct: 151 YYDSEQYRKDGGDGTGHWVYEKQEDIEEAARAELWREELIEEIEQKVGGLRELEEAGRK 209

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255646889|gb|ACU23914.1| unknown [Glycine max]

 Score =  209 bits (532), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 108/177 (61%), Positives = 130/177 (73%), Gaps = 9/177 (5%)

Query: 1   MSFTITTPNVQSS-LQSTKFDTHPCSKSLKQGSRTKLFN-GWQQLEGSKKGRACL----- 53
           + FT+   +  SS LQ+ KF  +  S+  KQ S++ LFN  WQ LEG  + R  L     
Sbjct: 6   LGFTLFKSHTLSSCLQTKKFQVNHSSRLPKQHSKSTLFNRPWQVLEGKSEKRGSLCKVNG 65

Query: 54  --NWPLIAILVEHAEGQRDLITEKSIWHLSDQAIKNVYLFYIMFTCWGCMFFSATKDPYY 111
             +WPL+AI+VE  EGQRDLITEK++ HLSDQAIKNVY +YIMFT WGC+FF A KDPYY
Sbjct: 66  LPDWPLMAIIVEQMEGQRDLITEKTVSHLSDQAIKNVYSWYIMFTVWGCLFFGAMKDPYY 125

Query: 112 DSDAYREDGGDGTGHWFYEKQEEIEEAARAELWREELIEEIEQKVGGLQELEEAGRK 168
           DS+ YR DGGDGTG+W YEKQ+ +E  AR  LWREELIEEIEQKV GL+ELEEAG+K
Sbjct: 126 DSETYRGDGGDGTGNWIYEKQDAMEAEAREALWREELIEEIEQKVEGLRELEEAGKK 182

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356508539|ref|XP_003523013.1| PREDICTED: uncharacterized protein LOC100801331 [Glycine max]

 Score =  209 bits (531), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 108/177 (61%), Positives = 127/177 (71%), Gaps = 9/177 (5%)

Query: 1   MSFT-ITTPNVQSSLQSTKFDTHPCSKSLKQGSRTKLFN-GWQQLEGSKKGRACL----- 53
           M FT   +  + S LQ+ KF  +  S+  KQ S + L N  WQ LEG  K R  L     
Sbjct: 6   MGFTPFKSHTLSSCLQTNKFQVNQSSRLPKQHSNSSLINRPWQVLEGKSKKRGSLCKVNG 65

Query: 54  --NWPLIAILVEHAEGQRDLITEKSIWHLSDQAIKNVYLFYIMFTCWGCMFFSATKDPYY 111
             +WPL+AI+VE  EGQRDLITEK++ HLSDQAIKNVY +YIMFT WGC+FF A KDPYY
Sbjct: 66  LPDWPLMAIIVEQMEGQRDLITEKTVSHLSDQAIKNVYSWYIMFTVWGCLFFGAMKDPYY 125

Query: 112 DSDAYREDGGDGTGHWFYEKQEEIEEAARAELWREELIEEIEQKVGGLQELEEAGRK 168
           DS+ YR DGGDGTG+W YEKQ+ +E  AR  LWREELIEEIEQKV GL+ELEEAG+K
Sbjct: 126 DSETYRGDGGDGTGNWIYEKQDAMEAEAREALWREELIEEIEQKVEGLRELEEAGKK 182

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449440802|ref|XP_004138173.1| PREDICTED: uncharacterized protein LOC101223170 [Cucumis sativus] gi|449477229|ref|XP_004154966.1| PREDICTED: uncharacterized protein LOC101226186 [Cucumis sativus]

 Score =  208 bits (530), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 106/170 (62%), Positives = 124/170 (72%), Gaps = 4/170 (2%)

Query: 3   FTITTPNVQSSLQSTKFDTHPCSKSLKQG---SRTKLFNGWQQLEGS-KKGRACLNWPLI 58
           F+I  P + SS    K    P SK L      S  +L    +   GS  K  A  +W L+
Sbjct: 8   FSIIKPTLHSSNLHPKSALIPHSKLLSNSGGFSHQELPKVVKPKRGSLSKVNAFPDWQLM 67

Query: 59  AILVEHAEGQRDLITEKSIWHLSDQAIKNVYLFYIMFTCWGCMFFSATKDPYYDSDAYRE 118
           A+LV+H +GQRDL+T KSI HLSD AIKNVY  YIMFTCWGC+FF + KDPYYDS+ YR+
Sbjct: 68  AVLVDHLDGQRDLVTHKSIVHLSDAAIKNVYSLYIMFTCWGCLFFGSMKDPYYDSEVYRK 127

Query: 119 DGGDGTGHWFYEKQEEIEEAARAELWREELIEEIEQKVGGLQELEEAGRK 168
           DGGDGTGHW YEKQE+IEEAARA+LWREELIEEIEQKVGGL+ELEEAG+K
Sbjct: 128 DGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQKVGGLRELEEAGKK 177

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356516818|ref|XP_003527090.1| PREDICTED: uncharacterized protein LOC100800656 [Glycine max]

 Score =  207 bits (527), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 107/177 (60%), Positives = 130/177 (73%), Gaps = 9/177 (5%)

Query: 1   MSFTITTPNVQSS-LQSTKFDTHPCSKSLKQGSRTKLFN-GWQQLEGSKKGRACL----- 53
           + FT+   +  SS LQ+ KF  +  S+  KQ S++ LFN  WQ LEG  + R  L     
Sbjct: 6   LGFTLFKSHTLSSCLQTKKFQVNHSSRLPKQHSKSTLFNRPWQVLEGKSEKRGSLCKVNG 65

Query: 54  --NWPLIAILVEHAEGQRDLITEKSIWHLSDQAIKNVYLFYIMFTCWGCMFFSATKDPYY 111
             +WPL+AI+VE  EGQRDLITEK++ HLSD+AIKNVY +YIMFT WGC+FF A KDPYY
Sbjct: 66  LPDWPLMAIIVEQMEGQRDLITEKTVSHLSDRAIKNVYSWYIMFTVWGCLFFGAMKDPYY 125

Query: 112 DSDAYREDGGDGTGHWFYEKQEEIEEAARAELWREELIEEIEQKVGGLQELEEAGRK 168
           DS+ YR DGGDGTG+W YEKQ+ +E  AR  LWREELIEEIEQKV GL+ELEEAG+K
Sbjct: 126 DSETYRGDGGDGTGNWIYEKQDAMEAEAREALWREELIEEIEQKVEGLRELEEAGKK 182

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388504538|gb|AFK40335.1| unknown [Lotus japonicus]

 Score =  202 bits (513), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 102/176 (57%), Positives = 124/176 (70%), Gaps = 8/176 (4%)

Query: 1   MSFTITTPNVQSS-LQSTKFDTHPCSKSLKQGSRTKLFN-GWQQLEGS------KKGRAC 52
           M FT+   ++  S LQ+ +FD +P S+  K  S + LF+  WQ  E        +K  A 
Sbjct: 6   MGFTVFKSHIHCSCLQTKRFDVNPSSRLPKLHSNSTLFHRSWQVFESKCKRASLRKVNAL 65

Query: 53  LNWPLIAILVEHAEGQRDLITEKSIWHLSDQAIKNVYLFYIMFTCWGCMFFSATKDPYYD 112
            +WPL+AILVE  EGQRD+ITEK+IWHLSD  IKNVY +YIMFT WGC+ F + KDPYYD
Sbjct: 66  PDWPLMAILVEQMEGQRDMITEKTIWHLSDGQIKNVYSWYIMFTVWGCLVFGSMKDPYYD 125

Query: 113 SDAYREDGGDGTGHWFYEKQEEIEEAARAELWREELIEEIEQKVGGLQELEEAGRK 168
           S+ YR DGGDGTG+W YEKQE +E  AR  LWREEL+EEIEQKVGGL+ELEE   K
Sbjct: 126 SETYRGDGGDGTGNWIYEKQEIMEAEAREALWREELVEEIEQKVGGLKELEEVSTK 181

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	168
TAIR|locus:2034980	175	PnsB4 "AT1G18730" [Arabidopsis	0.958	0.92	0.44	2.9e-32

TAIR|locus:2034980 PnsB4 "AT1G18730" [Arabidopsis thaliana (taxid:3702)]

 Score = 353 (129.3 bits), Expect = 2.9e-32, P = 2.9e-32
 Identities = 77/175 (44%), Positives = 101/175 (57%)

Query:     2 SFTITTPNVQSSLQ-STKFDTHP-----CSKSLKQGSRTKLFNGWQQLEGSKKGRACL-- 53
             SFT T  ++ SS   S K ++ P      SK++ +     L      + GS   R  L  
Sbjct:     7 SFTFTNLHIPSSYNHSPKQNSGPNHGYWLSKNVNEKRERNL------MRGSLCVRKALPH 60

Query:    54 NWPLIAILVEHAEGQRDLITEKSIWHLSDQAIKNVYLFYIMFTCWGCMFFSATKDPYYDS 113
             + PL+A++V+  EG RD+ITEK +WHLSD+AIKNVY+FYIMFTCWGC++F + KDP+YDS
Sbjct:    61 DLPLMAVMVQQIEGMRDIITEKHVWHLSDKAIKNVYMFYIMFTCWGCLYFGSAKDPFYDS 120

Query:   114 DAYREDGGDGTGHWFYXXXXXXXXXXXXXXXXXXXXXXXXXXVGGLQELEEAGRK 168
             + YR DGGDGTG+W Y                          VGGL+ELEEA  K
Sbjct:   121 EEYRGDGGDGTGYWVYETQEDIEEKARAELWREELIEEIEQKVGGLRELEEAVTK 175


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.135   0.437    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      168       142   0.00091  102 3  11 22  0.45    31
                                                     30  0.47    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  607 (65 KB)
  Total size of DFA:  163 KB (2096 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  12.25u 0.12s 12.37t   Elapsed:  00:00:01
  Total cpu time:  12.25u 0.12s 12.37t   Elapsed:  00:00:01
  Start:  Fri May 10 06:21:50 2013   End:  Fri May 10 06:21:51 2013

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009773 "photosynthetic electron transport in photosystem I" evidence=TAS

GO:0010598 "NAD(P)H dehydrogenase complex (plastoquinone)" evidence=NAS

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0009853 "photorespiration" evidence=RCA

GO:0015979 "photosynthesis" evidence=RCA

GO:0015995 "chlorophyll biosynthetic process" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA

GO:0030003 "cellular cation homeostasis" evidence=RCA

GO:0070838 "divalent metal ion transport" evidence=RCA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00016315001	SubName- Full=Chromosome chr17 scaffold_12, whole genome shotgun sequence; (181 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00023910001	SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (216 aa)				•			•		0.556
	GSVIVG00034383001	SubName- Full=Putative uncharacterized protein (Chromosome chr9 scaffold_7, whole genome shotgu [...] (144 aa)				•					0.441
	GSVIVG00024835001	SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (329 aa)				•					0.431
	GSVIVG00011932001	SubName- Full=Chromosome undetermined scaffold_2569, whole genome shotgun sequence; (393 aa)				•					0.428
	GSVIVG00003851001	SubName- Full=Chromosome chr8 scaffold_150, whole genome shotgun sequence; (518 aa)				•					0.428
	GSVIVG00026129001	SubName- Full=Chromosome chr15 scaffold_37, whole genome shotgun sequence; (273 aa)				•					0.422
	GSVIVG00037644001	SubName- Full=Chromosome chr9 scaffold_90, whole genome shotgun sequence; (395 aa)				•					0.419
	GSVIVG00015393001	SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (270 aa)				•					0.418
	GSVIVG00020113001	SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (218 aa)				•					0.417
	GSVIVG00035114001	SubName- Full=Chromosome chr1 scaffold_75, whole genome shotgun sequence; (226 aa)				•					0.415

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	168
PLN00180	180	PLN00180, PLN00180, NDF6 (NDH-dependent flow 6); P	4e-91

>gnl|CDD|177775 PLN00180, PLN00180, NDF6 (NDH-dependent flow 6); Provisional

 Score =  262 bits (672), Expect = 4e-91
 Identities = 111/178 (62%), Positives = 129/178 (72%), Gaps = 10/178 (5%)

Query: 1   MSFTITTPNVQSSL-QSTKFDTHPCSKSLKQGSRTKLFNGWQQLEGSKKG-RACL----- 53
             FT T P++ SS   STK D+ PC   L Q S  +  +GW   + SK   R  L     
Sbjct: 3   TPFTKTKPHIPSSYAHSTKQDSGPCHGLLAQCSSGRFLSGWVNEKRSKNSKRGSLCKVNA 62

Query: 54  ---NWPLIAILVEHAEGQRDLITEKSIWHLSDQAIKNVYLFYIMFTCWGCMFFSATKDPY 110
              + PL+A++VEH EGQRD IT KSIWHLSD AIKNVY FYIMFTCWGC+FF + KDP+
Sbjct: 63  LPHDLPLMAVMVEHVEGQRDYITHKSIWHLSDAAIKNVYTFYIMFTCWGCLFFGSMKDPF 122

Query: 111 YDSDAYREDGGDGTGHWFYEKQEEIEEAARAELWREELIEEIEQKVGGLQELEEAGRK 168
           YDS+ YR DGGDGTGHW YE+QE+IEE+ARAELWREELIEEIEQKVGGL+ELEEA  K
Sbjct: 123 YDSEEYRGDGGDGTGHWVYERQEDIEESARAELWREELIEEIEQKVGGLRELEEAVTK 180

Length = 180

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	168
PLN00180	180	NDF6 (NDH-dependent flow 6); Provisional	100.0

>PLN00180 NDF6 (NDH-dependent flow 6); Provisional

Probab=100.00  E-value=1.6e-99  Score=614.44  Aligned_cols=168  Identities=66%  Similarity=1.137  Sum_probs=165.0

Q ss_pred             CceeeecCccccccc-ccccccccCCcccccCCCCCCCcchhhhcccc-cccccc--------chhHHHHHHHhhhcccc
Q 030974            1 MSFTITTPNVQSSLQ-STKFDTHPCSKSLKQGSRTKLFNGWQQLEGSK-KGRACL--------NWPLIAILVEHAEGQRD   70 (168)
Q Consensus         1 m~ft~~~~~~~sslq-~tK~d~~p~s~~~kq~s~s~~~~~w~~~~~~~-~~r~sl--------~~plma~~ve~~e~~rd   70 (168)
                      ||||+++||+++|+| ++|+|++||+++|+|||+++++++|++.+++| +||+|+        ||||||+||||+|||||
T Consensus         3 ~~ft~~~~h~~ss~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~r~k~~kr~s~~kvna~P~d~pLMa~mVEhvegqRD   82 (180)
T PLN00180          3 TPFTKTKPHIPSSYAHSTKQDSGPCHGLLAQCSSGRFLSGWVNEKRSKNSKRGSLCKVNALPHDLPLMAVMVEHVEGQRD   82 (180)
T ss_pred             CcccccCcchhhhhhcchhhccCccccCccccccccccCchhhcccccccccccceeeccCCcchhHHHHHHHHHhcccc
Confidence            699999999999988 99999999999999999999999999999994 489998        99999999999999999


Q ss_pred             eeeecceeeccHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCcccCCCCCccceeeechHHHHHHHHHHHHHHHHHH
Q 030974           71 LITEKSIWHLSDQAIKNVYLFYIMFTCWGCMFFSATKDPYYDSDAYREDGGDGTGHWFYEKQEEIEEAARAELWREELIE  150 (168)
Q Consensus        71 ~i~~ksiwhlsd~aIK~Vl~~ltm~f~~gclFFGstKngFYDSD~YrGnGGdgtghW~Y~~qe~~E~~aR~elwrEeLie  150 (168)
                      +||+||||||||+|||+||+||+|||||||||||||||||||||+|||+|||||||||||+||||||+||+|||||||||
T Consensus        83 ~it~KsIwHLSD~aiKnVYtfY~mFT~WG~~fFgSmKDPfYDSe~YRgdGGDGT~hW~Yd~QEd~E~sAReeL~REELiE  162 (180)
T PLN00180         83 YITHKSIWHLSDAAIKNVYTFYIMFTCWGCLFFGSMKDPFYDSEEYRGDGGDGTGHWVYERQEDIEESARAELWREELIE  162 (180)
T ss_pred             eeeechhhhccHHHHhHHHHHHHHHHHHHHhheeccCCcccchHHhcccCCCCceeeEeehHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhhhHHHHHhhcC
Q 030974          151 EIEQKVGGLQELEEAGRK  168 (168)
Q Consensus       151 EIEqkvgglrelEea~~k  168 (168)
                      |||||||||||||||++|
T Consensus       163 EIEQkVGGLRELEEa~~k  180 (180)
T PLN00180        163 EIEQKVGGLRELEEAVTK  180 (180)
T ss_pred             HHHHHhhhHHHHHHhhcC
Confidence            999999999999999987

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00