Citrus Sinensis ID: 030986

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------17
Protein Sequence
MASFCLSTASTSKTLAFAPPHAAKMTSSSASTSHSCSCSMESVPNFSSNRLIPNNRMAQTLVVPQFGFTRVIRYNQRAKRQVVRMAPEEEKLTRRSPLDFPIEWEKPKPARRPDIFPQFSPMKTPLPPPLPCDPPEEDEEEEEKKEEEEENPDKEDPDKEESGNSNSQ
Secondary Structure (PSIPRED)
cccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccHHHHHHHHHHHHHcccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEccccccccccccccccccccccccccccccccccccHcccccccccccccccccccccccccEccccccHHHcEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccc
Coil and Loop (DISEMBL)
masfclstastsktlafapphaakmtsssastshscscsmesvpnfssnrlipnnrmaqtlvvpqfgftRVIRYNQRAKRQVvrmapeeekltrrspldfpiewekpkparrpdifpqfspmktplppplpcdppeedeeeeekkeeeeenpdkedpdkeesgnsnsq
Flexible Loop (DISEMBL)
masfclstastsktlafapPHAAKMTSSSASTSHSCSCSMESVPNFSSNRLIPNNRMAQTLVVPQFGFTRVIRYNQRAkrqvvrmapeeekltrrspldfpiewekpkparRPDIFPqfspmktplpppLPCDPPEEDEEEEekkeeeeenpdkedpdkeesgnsnsq
Low Complexity Region (SEG)
MASFCLSTASTSKTLAFAPPhaakmtsssastshscscsmesVPNFSSNRLIPNNRMAQTLVVPQFGFTRVIRYNQRAKRQVVRMAPEEEKLTRRSPLDFPIEWEKPKPARRPDIFPQFSPMKTplppplpcdppeedeeeeekkeeeeenpdkedpdkeeSGNSNSQ
Disordered region (IsUnstruct)
******************************************************NRMAQTLVVPQFGFTRVIRYNQRA******************************************************************************************
Disordered Region (DISOPRED)
**SFC**TASTSKT**************************ESVPNFSSNRLIPN******************************************************************************************************************
Disordered Region (DISEMBL)
*********STSKTLAFA************************VPNFSSNRLIPNNRMAQTLVVPQFGFTRVIRYNQRAKRQVVRMAPEEEKLTRRSPLDFPIEWEKPKPARRPDIFPQFSPMKTPLPPPLP*************************************
Disordered Region (DISPRO)
**S*****ASTSKT****************************************NRMAQTLVVPQFGFTRVIRYNQRAKRQVVRMAPE****TRRSPLDFPIEWEKPKPARRPDIFPQFSPMKTPLPPP***************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MASFCLSTASTSKTLAFAPPHAAKMTSSSASTSHSCSCSMESVPNFSSNRLIPNNRMAQTLVVPQFGFTRVIRYNQRAKRQVVRMAPEEEKLTRRSPLDFPIEWEKPKPARRPDIFPQFSPMKTPLPPPLPCDPPEEDEEEEEKKEEEEENPDKEDPDKEESGNSNSQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	168
224143529	147	predicted protein [Populus trichocarpa]	0.625	0.714	0.532	6e-19
427199430	162	hypothetical protein [Morella rubra]	0.619	0.641	0.503	2e-18
262192745	129	hypothetical protein [Nicotiana tabacum]	0.285	0.372	0.916	2e-18
449461977	146	PREDICTED: uncharacterized protein LOC10	0.583	0.671	0.504	4e-17
357468373	135	hypothetical protein MTR_4g012810 [Medic	0.511	0.637	0.837	4e-17
297832322	142	hypothetical protein ARALYDRAFT_480607 [	0.351	0.415	0.688	2e-16
255640901	128	unknown [Glycine max]	0.285	0.375	0.833	2e-16
356521959	128	PREDICTED: uncharacterized protein LOC10	0.285	0.375	0.833	3e-16
359806834	131	uncharacterized protein LOC100814232 [Gl	0.285	0.366	0.833	5e-16
357150127	139	PREDICTED: uncharacterized protein LOC10	0.303	0.366	0.823	7e-16

>gi|224143529|ref|XP_002324987.1| predicted protein [Populus trichocarpa] gi|118484017|gb|ABK93895.1| unknown [Populus trichocarpa] gi|222866421|gb|EEF03552.1| predicted protein [Populus trichocarpa]

 Score = 99.0 bits (245), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 66/124 (53%), Positives = 78/124 (62%), Gaps = 19/124 (15%)

Query: 1   MASFCLSTASTSKTLAFAPPHAAKMTSSSASTSHSCSCSMESVPNFSSNRLIPNNRMAQT 60
           MAS  LS  STSK LA APP +A  T++SAS+S SC  S +    F + RL+ +      
Sbjct: 1   MASIYLSICSTSKPLA-APPKSAGRTTASASSSSSCFKS-QFCGWFLAGRLVCSGS---- 54

Query: 61  LVVPQFGFTRVIRYNQRAKRQVVRMAPEEEKLTRRSPLDFPIEWEKPKPARRPDIFPQFS 120
                          Q+ + QVV MAP+EEKLTRRSPLDFPIEWE+PKP  RPDIFPQFS
Sbjct: 55  -------------RKQKKQMQVVSMAPDEEKLTRRSPLDFPIEWERPKPGSRPDIFPQFS 101

Query: 121 PMKT 124
           PMKT
Sbjct: 102 PMKT 105

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|427199430|gb|AFY26904.1| hypothetical protein [Morella rubra]

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 72/143 (50%), Positives = 85/143 (59%), Gaps = 39/143 (27%)

Query: 1   MASFCLSTASTSKTLAFAPPHAA-------------KMTSSSASTSHSCS-----CSMES 42
           MAS CL T  TSK L F P  A+               +SSS++TSH+C      CSM S
Sbjct: 1   MASICLFTP-TSKALTFLPSPASSATHTSLTPPPPPPPSSSSSATSHTCRLVRPRCSMVS 59

Query: 43  VPNFSSNRLIPNNRMAQTLVVPQFGFTRVIRYNQRAKR-QVVRMAPEEEKLTRRSPLDFP 101
            P F S R++ ++                   + RAK+ QVVRMAPEEEKLTRR+PLDFP
Sbjct: 60  FPMFDSPRMVSSS-------------------SGRAKKLQVVRMAPEEEKLTRRNPLDFP 100

Query: 102 IEWEKPKPARRPDIFPQFSPMKT 124
           IEWE+PKP RRPDIFPQFSPMKT
Sbjct: 101 IEWERPKPGRRPDIFPQFSPMKT 123

Source: Morella rubra

Species: Morella rubra

Genus: Morella

Family: Myricaceae

Order: Fagales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|262192745|gb|ACY30442.1| hypothetical protein [Nicotiana tabacum]

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 44/48 (91%), Positives = 47/48 (97%)

Query: 81  QVVRMAPEEEKLTRRSPLDFPIEWEKPKPARRPDIFPQFSPMKTPLPP 128
           Q+VRMAPEEEK+TRRSPLDFPIEWE+PKP RRPDIFPQFSPMKTPLPP
Sbjct: 82  QIVRMAPEEEKMTRRSPLDFPIEWERPKPGRRPDIFPQFSPMKTPLPP 129

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449461977|ref|XP_004148718.1| PREDICTED: uncharacterized protein LOC101219508 [Cucumis sativus] gi|449525954|ref|XP_004169981.1| PREDICTED: uncharacterized LOC101219508 [Cucumis sativus]

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 58/115 (50%), Positives = 74/115 (64%), Gaps = 17/115 (14%)

Query: 11  TSKTLAF-APPHAAKMTSSSASTSHSCSCSMESVPNFSSNRLIPNNRMAQTLVVPQFGFT 69
           TSKTL   +  +    +SSS+ST+HSC C    + +F    +  +N +        FG  
Sbjct: 8   TSKTLVLPSVTYLPLSSSSSSSTTHSC-CLGGCICSFPIKPISTSNLI--------FG-- 56

Query: 70  RVIRYNQRAKRQVVRMAPEEEKLTRRSPLDFPIEWEKPKPARRPDIFPQFSPMKT 124
                 +R  RQVVRMAP+EEKLTRR+PLDFP+EWE+P+P RRPDIFPQFSPMKT
Sbjct: 57  -----RRRTGRQVVRMAPDEEKLTRRNPLDFPVEWERPRPGRRPDIFPQFSPMKT 106

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357468373|ref|XP_003604471.1| hypothetical protein MTR_4g012810 [Medicago truncatula] gi|355505526|gb|AES86668.1| hypothetical protein MTR_4g012810 [Medicago truncatula]

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 72/86 (83%), Positives = 80/86 (93%)

Query: 76  QRAKRQVVRMAPEEEKLTRRSPLDFPIEWEKPKPARRPDIFPQFSPMKTPLPPPLPCDPP 135
           +R+ + VVRMAP+EEKLTRRSPLDFPIEWEKPKP RRPDIFPQFSPMKTPLPPP+P DPP
Sbjct: 49  RRSSKHVVRMAPDEEKLTRRSPLDFPIEWEKPKPGRRPDIFPQFSPMKTPLPPPMPADPP 108

Query: 136 EEDEEEEEKKEEEEENPDKEDPDKEE 161
           EEDEEEEEK+E EEE+PDKEDP+K E
Sbjct: 109 EEDEEEEEKREGEEEDPDKEDPEKPE 134

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297832322|ref|XP_002884043.1| hypothetical protein ARALYDRAFT_480607 [Arabidopsis lyrata subsp. lyrata] gi|297329883|gb|EFH60302.1| hypothetical protein ARALYDRAFT_480607 [Arabidopsis lyrata subsp. lyrata]

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 42/61 (68%), Positives = 51/61 (83%), Gaps = 2/61 (3%)

Query: 66  FGFTRVIRYNQRAKR--QVVRMAPEEEKLTRRSPLDFPIEWEKPKPARRPDIFPQFSPMK 123
           +GF+ + R ++R +    VV MAPEEEKLTRR+PLDFPIEWE+PKP RRPDIFP+FSPMK
Sbjct: 42  YGFSSIHRSSRRNRNPLHVVSMAPEEEKLTRRNPLDFPIEWERPKPGRRPDIFPKFSPMK 101

Query: 124 T 124
           T
Sbjct: 102 T 102

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255640901|gb|ACU20733.1| unknown [Glycine max]

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 40/48 (83%), Positives = 45/48 (93%)

Query: 77  RAKRQVVRMAPEEEKLTRRSPLDFPIEWEKPKPARRPDIFPQFSPMKT 124
           R +R +VRMAP+EEK+TRRSPLDFPIEWE+PKP RRPDIFPQFSPMKT
Sbjct: 40  RFRRHLVRMAPDEEKMTRRSPLDFPIEWERPKPGRRPDIFPQFSPMKT 87

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356521959|ref|XP_003529617.1| PREDICTED: uncharacterized protein LOC100808311 [Glycine max]

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 40/48 (83%), Positives = 45/48 (93%)

Query: 77  RAKRQVVRMAPEEEKLTRRSPLDFPIEWEKPKPARRPDIFPQFSPMKT 124
           R +R +VRMAP+EEK+TRRSPLDFPIEWE+PKP RRPDIFPQFSPMKT
Sbjct: 40  RFRRHLVRMAPDEEKMTRRSPLDFPIEWERPKPGRRPDIFPQFSPMKT 87

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359806834|ref|NP_001241056.1| uncharacterized protein LOC100814232 [Glycine max] gi|255628571|gb|ACU14630.1| unknown [Glycine max] gi|255644414|gb|ACU22712.1| unknown [Glycine max]

 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 40/48 (83%), Positives = 45/48 (93%)

Query: 77  RAKRQVVRMAPEEEKLTRRSPLDFPIEWEKPKPARRPDIFPQFSPMKT 124
           R +R +VRMAP+EEK+TRRSPLDFPIEWE+PKP RRPDIFPQFSPMKT
Sbjct: 43  RFRRHLVRMAPDEEKMTRRSPLDFPIEWERPKPGRRPDIFPQFSPMKT 90

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357150127|ref|XP_003575351.1| PREDICTED: uncharacterized protein LOC100825740 [Brachypodium distachyon]

 Score = 89.0 bits (219), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 42/51 (82%), Positives = 45/51 (88%)

Query: 77  RAKRQVVRMAPEEEKLTRRSPLDFPIEWEKPKPARRPDIFPQFSPMKTPLP 127
           R    VV MAP+EEK+TRRSPLDFPIEWEKPKP RRPDIFP+FSPMKTPLP
Sbjct: 43  RWDALVVCMAPDEEKITRRSPLDFPIEWEKPKPGRRPDIFPKFSPMKTPLP 93

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	168
TAIR|locus:2059647	140	AT2G17240 "AT2G17240" [Arabido	0.351	0.421	0.725	3.1e-19
TAIR|locus:505006370	149	AT3G24506 "AT3G24506" [Arabido	0.357	0.402	0.656	5.8e-18

TAIR|locus:2059647 AT2G17240 "AT2G17240" [Arabidopsis thaliana (taxid:3702)]

 Score = 230 (86.0 bits), Expect = 3.1e-19, P = 3.1e-19
 Identities = 45/62 (72%), Positives = 50/62 (80%)

Query:    66 FGFTRVIRYNQRAKR---QVVRMAPEEEKLTRRSPLDFPIEWEKPKPARRPDIFPQFSPM 122
             F F+ V R + R  R   QVV MAPEEEKLTRR+PLDFPIEWE+PKP RRPDIFP+FSPM
Sbjct:    39 FAFSSVHRSSSRRNRNQLQVVSMAPEEEKLTRRNPLDFPIEWERPKPGRRPDIFPKFSPM 98

Query:   123 KT 124
             KT
Sbjct:    99 KT 100

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:505006370 AT3G24506 "AT3G24506" [Arabidopsis thaliana (taxid:3702)]

 Score = 218 (81.8 bits), Expect = 5.8e-18, P = 5.8e-18
 Identities = 42/64 (65%), Positives = 50/64 (78%)

Query:    61 LVVPQFGFTRVIRYNQRAKRQVVRMAPEEEKLTRRSPLDFPIEWEKPKPARRPDIFPQFS 120
             + V +F  +R      R + QVV MAPEEEKLTRR+PLDFPIEWE+PKP RRPDIFP+FS
Sbjct:    49 IAVQRFALSR----KTRKQLQVVAMAPEEEKLTRRNPLDFPIEWERPKPGRRPDIFPKFS 104

Query:   121 PMKT 124
             PMK+
Sbjct:   105 PMKS 108


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.130   0.387    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      168       109   0.00091  102 3  11 22  0.43    30
                                                     29  0.41    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  524 (56 KB)
  Total size of DFA:  111 KB (2075 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  10.99u 0.16s 11.15t   Elapsed:  00:00:00
  Total cpu time:  10.99u 0.16s 11.15t   Elapsed:  00:00:00
  Start:  Fri May 10 06:47:59 2013   End:  Fri May 10 06:47:59 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0009536 "plastid" evidence=IDA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pg.C_LG_XVIII0658 SubName- Full=Putative uncharacterized protein; (147 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	168
PRK06402	106	PRK06402, rpl12p, 50S ribosomal protein L12P; Revi	6e-04
TIGR03685	105	TIGR03685, L12P_arch, 50S ribosomal protein L12P	0.002
TIGR02031	589	TIGR02031, BchD-ChlD, magnesium chelatase ATPase s	0.002
pfam02459	548	pfam02459, Adeno_terminal, Adenoviral DNA terminal	0.004
PLN02328	808	PLN02328, PLN02328, lysine-specific histone demeth	0.004

>gnl|CDD|235795 PRK06402, rpl12p, 50S ribosomal protein L12P; Reviewed

 Score = 37.2 bits (87), Expect = 6e-04
 Identities = 9/38 (23%), Positives = 19/38 (50%)

Query: 119 FSPMKTPLPPPLPCDPPEEDEEEEEKKEEEEENPDKED 156
            +P+               +E++EE++EEEE+   +E+
Sbjct: 59  AAPVAAAAAAAAAAAAAAAEEKKEEEEEEEEKEESEEE 96

Length = 106

>gnl|CDD|234311 TIGR03685, L12P_arch, 50S ribosomal protein L12P

 Score = 35.8 bits (83), Expect = 0.002
 Identities = 11/37 (29%), Positives = 18/37 (48%)

Query: 127 PPPLPCDPPEEDEEEEEKKEEEEENPDKEDPDKEESG 163
           P              EE++EEEEE  ++E+  +EE+ 
Sbjct: 61  PVAAAAAAAAAAAAAEEEEEEEEEEEEEEEESEEEAM 97

This model represents the L12P protein of the large (50S) subunit of the archaeal ribosome. Length = 105

>gnl|CDD|233692 TIGR02031, BchD-ChlD, magnesium chelatase ATPase subunit D

 Score = 37.5 bits (87), Expect = 0.002
 Identities = 18/44 (40%), Positives = 22/44 (50%)

Query: 121 PMKTPLPPPLPCDPPEEDEEEEEKKEEEEENPDKEDPDKEESGN 164
           P  T LP P P  PP     E  + EEE + PD+ DPD  E  +
Sbjct: 261 PRATRLPEPEPQPPPPPPPPEPPEPEEEPDEPDQTDPDDGEETD 304

This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 589

>gnl|CDD|217049 pfam02459, Adeno_terminal, Adenoviral DNA terminal protein

 Score = 36.5 bits (85), Expect = 0.004
 Identities = 20/35 (57%), Positives = 25/35 (71%)

Query: 127 PPPLPCDPPEEDEEEEEKKEEEEENPDKEDPDKEE 161
           PPP P +P EE+EEEEE  EEEEE  ++E+   EE
Sbjct: 298 PPPSPPEPEEEEEEEEEVPEEEEEEEEEEERTFEE 332

This protein is covalently attached to the terminii of replicating DNA in vivo. Length = 548

>gnl|CDD|215187 PLN02328, PLN02328, lysine-specific histone demethylase 1 homolog

 Score = 36.5 bits (84), Expect = 0.004
 Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 1/45 (2%)

Query: 114 DIFPQFSPMKTPLPPPLPCDPP-EEDEEEEEKKEEEEENPDKEDP 157
              P      +PLPP    D P  + + +E   E++ +NP+  +P
Sbjct: 50  TQSPLTELQPSPLPPNTTLDAPVSDSQGDESSSEQQPQNPNSTEP 94

Length = 808

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

No hit with probability above 80.00

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00