Citrus Sinensis ID: 030989


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------17
MDIQDQLFDEKTNTVTIKVVSCSPENIRDKLSCKGEGSIKSIEILEPAGKPKPPQDAHNQIPTLLEYLKPPQPQDGDNGIPTPLDNHIPTPLERLKPLQPEDGDNNHIPTPLDLPKPLLPPPVPEPSYPPFYARLVYESWGGSCDNRVYCRGRSSDCTCEENPPCSIM
ccccccHHcccccEEEEEEEEccHHHHHccccccccccEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
ccccccEEEccccEEEEEEEEccHHHHHHHHEEccccEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccEEEEEEccccccccccEEEccccccEEEccccccccc
mdiqdqlfdektnTVTIKVVscspenirdklsckgegsiksieilepagkpkppqdahnqiptlleylkppqpqdgdngiptpldnhiptplerlkplqpedgdnnhiptpldlpkpllpppvpepsyppfyARLVYEswggscdnrvycrgrssdctceenppcsim
mdiqdqlfdektntvtikvvscspenirdklsckgegsIKSIEILEPAGKPKPPQDAHNQIPTLLEYLKPPQPQDGDNGIPTPLDNHIPTPLERLKPLQPEDGDNNHIPTPLDLPKPLLPPPVPEPSYPPFYARLVYESWGGSCDNRVYCRGrssdctceenppcsim
MDIQDQLFDEKTNTVTIKVVSCSPENIRDKLSCKGEGSIKSIEILEPAGKPKPPQDAHNQIPTLLEYLKPPQPQDGDNGIPTPLDNHIPTPLERLKPLQPEDGDNNHIptpldlpkpllpppvpepsyppFYARLVYESWGGSCDNRVYCRGRSSDCTCEENPPCSIM
*************TVTIKVVSCS********************************************************************************************************YPPFYARLVYESWGGSCDNRVYCRGR***************
****DQLFDEKTNTVTIKVVSCSPENIRDKLSCKGEGSIKSI******************************************************************PTPLDLPKPLLPPPVPEPSYPPFYARLVYESWGGSCDNRVYCRGRSSDCTCEENPPCSI*
MDIQDQLFDEKTNTVTIKVVSCSPENIRDKLSCKGEGSIKSIEILEPA********AHNQIPTLLEYLKPPQPQDGDNGIPTPLDNHIPTPLERLKPLQPEDGDNNHIPTPLDLPKPLLPPPVPEPSYPPFYARLVYESWGGSCDNRVYCRGR***************
**IQDQLFDEKTNTVTIKVVSCSPENIRDKLSCKGEGSIKSIEILEPAGKPKP*******IPTLLEYLKPP*P*DGDNGIPTPLDNHIPTPLERLKPLQPEDGDNNHIPTPLDLPKPLLPPPVPEPSYPPFYARLVYESWGGSCDNRVYCRGRSSDCTCEENPPCS**
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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oooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MDIQDQLFDEKTNTVTIKVVSCSPENIRDKLSCKGEGSIKSIEILEPAGKPKPPQDAHNQIPTLLEYLKPPQPQDGDNGIPTPLDNHIPTPLERLKPLQPEDGDNNHIPTPLDLPKPLLPPPVPEPSYPPFYARLVYESWGGSCDNRVYCRGRSSDCTCEENPPCSIM
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query168
388494848261 unknown [Medicago truncatula] 0.255 0.164 0.697 5e-09
357480619261 Proline-rich protein [Medicago truncatul 0.255 0.164 0.697 5e-09
388497846209 unknown [Medicago truncatula] 0.261 0.210 0.681 6e-09
194466241232 putative metal ion-binding protein [Arac 0.267 0.193 0.711 1e-08
351721915240 uncharacterized protein LOC547653 [Glyci 0.261 0.183 0.636 2e-08
217071028168 unknown [Medicago truncatula] gi|3885117 0.261 0.261 0.613 3e-08
186489766189 metal ion binding protein [Arabidopsis t 0.273 0.243 0.630 4e-08
5430758178 Hypothetical Protein [Arabidopsis thalia 0.273 0.258 0.630 4e-08
359496105233 PREDICTED: uncharacterized protein LOC10 0.261 0.188 0.681 8e-08
119888002182 proline-rich protein [Gossypium hirsutum 0.25 0.230 0.690 8e-08
>gi|388494848|gb|AFK35490.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
 Score = 65.9 bits (159), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 30/43 (69%), Positives = 36/43 (83%)

Query: 3  IQDQLFDEKTNTVTIKVVSCSPENIRDKLSCKGEGSIKSIEIL 45
          I+DQ++DEK N VTI VV CSPE IRDK+ CKG G+IKSIEI+
Sbjct: 37 IRDQVYDEKNNIVTITVVCCSPEKIRDKICCKGCGAIKSIEIV 79




Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357480619|ref|XP_003610595.1| Proline-rich protein [Medicago truncatula] gi|355511650|gb|AES92792.1| Proline-rich protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|388497846|gb|AFK36989.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|194466241|gb|ACF74351.1| putative metal ion-binding protein [Arachis hypogaea] Back     alignment and taxonomy information
>gi|351721915|ref|NP_001235946.1| uncharacterized protein LOC547653 [Glycine max] gi|22597168|gb|AAN03471.1| unknown protein [Glycine max] Back     alignment and taxonomy information
>gi|217071028|gb|ACJ83874.1| unknown [Medicago truncatula] gi|388511723|gb|AFK43923.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|186489766|ref|NP_175367.2| metal ion binding protein [Arabidopsis thaliana] gi|332194307|gb|AEE32428.1| metal ion binding protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|5430758|gb|AAD43158.1|AC007504_13 Hypothetical Protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|359496105|ref|XP_003635154.1| PREDICTED: uncharacterized protein LOC100853846 [Vitis vinifera] Back     alignment and taxonomy information
>gi|119888002|gb|ABM05953.1| proline-rich protein [Gossypium hirsutum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query168
TAIR|locus:1006589875254 AT4G16380 [Arabidopsis thalian 0.517 0.342 0.514 5.4e-23
TAIR|locus:2010192189 AT1G49420 [Arabidopsis thalian 0.607 0.539 0.422 1.8e-17
TAIR|locus:2026042171 AT1G51090 [Arabidopsis thalian 0.553 0.543 0.444 2.5e-16
TAIR|locus:1006589875 AT4G16380 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 200 (75.5 bits), Expect = 5.4e-23, Sum P(2) = 5.4e-23
 Identities = 54/105 (51%), Positives = 61/105 (58%)

Query:     3 IQDQLFDEKTNTVTIKVVSCSPENIRDKLSCKGEGSIKSIEILEPAGKPKPPQDAHNQIP 62
             I+DQLFDEK+N V IKVV CSPE I DKL  KG GSIK+IEI+EP   PKPPQ    Q  
Sbjct:    37 IRDQLFDEKSNIVIIKVVCCSPERIMDKLCSKGGGSIKTIEIVEP---PKPPQPQPQQ-- 91

Query:    63 TLLEYLKPPQ-PQDGDNGIPT-PLDNHIPTPLERLK----PLQPE 101
                    PPQ P+D     P  P +   P   E+LK    P QPE
Sbjct:    92 -------PPQKPKDAQPKAPEKPKEPEKPKQPEKLKEPEKPKQPE 129


GO:0005634 "nucleus" evidence=ISM
GO:0030001 "metal ion transport" evidence=IEA
GO:0046872 "metal ion binding" evidence=IEA
GO:0009506 "plasmodesma" evidence=IDA
TAIR|locus:2010192 AT1G49420 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2026042 AT1G51090 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
AT1G49420
metal ion binding; metal ion binding; FUNCTIONS IN- metal ion binding; INVOLVED IN- metal ion transport; LOCATED IN- cellular_component unknown; CONTAINS InterPro DOMAIN/s- Heavy metal transport/detoxification protein (InterPro-IPR006121); BEST Arabidopsis thaliana protein match is- metal ion binding (TAIR-AT4G16380.1); Has 85 Blast hits to 83 proteins in 26 species- Archae - 2; Bacteria - 15; Metazoa - 7; Fungi - 11; Plants - 47; Viruses - 0; Other Eukaryotes - 3 (source- NCBI BLink). (189 aa)
(Arabidopsis thaliana)
Predicted Functional Partners:
RAB18
RAB18 (RESPONSIVE TO ABA 18); Belongs to the dehydrin protein family, which contains highly con [...] (186 aa)
       0.623
ACT8
ACT8 (ACTIN 8); copper ion binding / structural constituent of cytoskeleton; Member of a subcla [...] (377 aa)
       0.599
ABI1
ABI1 (ABA INSENSITIVE 1); calcium ion binding / protein serine/threonine phosphatase; Involved [...] (434 aa)
       0.567
HAB1
HAB1 (HOMOLOGY TO ABI1); catalytic/ protein serine/threonine phosphatase; mutant has ABA hypers [...] (511 aa)
       0.567
LTI65
LTI65 (LOW-TEMPERATURE-INDUCED 65); encodes a protein that is induced in expression in response [...] (619 aa)
       0.467
ATPANK2
ATPANK2 (PANTOTHENATE KINASE 2); pantothenate kinase; Encodes a protein with pantothenate kinas [...] (901 aa)
       0.465
ACT2
ACT2 (ACTIN 2); structural constituent of cytoskeleton; Encodes an actin that is constitutively [...] (377 aa)
       0.435
PP2CA
PP2CA (ARABIDOPSIS THALIANA PROTEIN PHOSPHATASE 2CA); protein binding / protein serine/threonin [...] (399 aa)
       0.409
ATCOAD
ATCOAD (4-phosphopantetheine adenylyltransferase); nucleotidyltransferase/ pantetheine-phosphat [...] (176 aa)
       0.409

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 168
KOG160373 consensus Copper chaperone [Inorganic ion transpor 89.9
>KOG1603 consensus Copper chaperone [Inorganic ion transport and metabolism] Back     alignment and domain information
Probab=89.90  E-value=0.43  Score=32.49  Aligned_cols=36  Identities=25%  Similarity=0.279  Sum_probs=30.8

Q ss_pred             cccceecccCCeEEEEEeecChhhhhhhhcccCCCce
Q 030989            3 IQDQLFDEKTNTVTIKVVSCSPENIRDKLSCKGEGSI   39 (168)
Q Consensus         3 Irdq~yDEK~NtVtIkVVcc~PEKI~~KL~CKG~~~I   39 (168)
                      +.+...|-++++||+++- .+|.+|.++|..+|++..
T Consensus        32 V~~v~id~~~~kvtV~g~-~~p~~vl~~l~k~~~k~~   67 (73)
T KOG1603|consen   32 VESVDIDIKKQKVTVKGN-VDPVKLLKKLKKTGGKRA   67 (73)
T ss_pred             eEEEEecCCCCEEEEEEe-cCHHHHHHHHHhcCCCce
Confidence            456788999999999997 799999999999775543




Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00