Citrus Sinensis ID: 031011

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------
MTADGGNQLISVHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSPKKYFVRPNTGVVQPWDSCIIRVTLQAQRESPPDMQCKDKFLLQSTIVPSNTDVDDLPPDTFNKDSGKTIEECKLRVVYVSPSSAQGNLEDEGLVSATRSPDANSVSFGILLFALQFL
cccccccccEEEcccEEEEEcccccEEEEEEEEEcccccEEEEEEccccccEEEEEccccccccccEEEEEEEEEcccccccccccccEEEEEEEEcccccccccccccccccccccEEEEEEcEEEEccccccccccccccccccccccccccccccEEEEEEEcc
ccccccccEEEEcccHcccccccccEEEEEEEEEcccccEEEEEEEccccccEEEcccccEEcccccEEEEEEEcccccccccccccccEEEEEEEEcccccHHHccHHHHcccccccEEHcEEEEEEEccccccccccccccccccccccccccccHHHHHHHHcc
mtadggnqlisvhPEELKFIFELEKqgfcdlkvinntEHHVAFKvkttspkkyfvrpntgvvqpwdsCIIRVTlqaqresppdmqckdkfllqstivpsntdvddlppdtfnkdsgktieeCKLRVVYvspssaqgnledeglvsatrspdansvSFGILLFALQFL
mtadggnqlisvHPEELKFIFELEKQGFCDLKVINNTEHHVafkvkttspkkyfvrpntgvvqpwdSCIIRVTLQAQRESPPDMQCKDKFLLQSTIvpsntdvddlppdtfnkdsgktieecKLRVVYVspssaqgnleDEGLVSATrspdansvsFGILLFALQFL
MTADGGNQLISVHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSPKKYFVRPNTGVVQPWDSCIIRVTLQAQRESPPDMQCKDKFLLQSTIVPSNTDVDDLPPDTFNKDSGKTIEECKLRVVYVSPSSAQGNLEDEGLVSATRSPDANSVSFGILLFALQFL
*********ISVHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSPKKYFVRPNTGVVQPWDSCIIRVTLQ*************KFLLQSTI**********************IEECKLRVVYV*************************VSFGILLFALQ**
***********VHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSPKKYFVRPNTGVVQPWDSCIIRVTLQAQRESPPDMQCKDKFLLQSTIVPSNTDVDDLP*****KD**KTIEECKLRVV*********************************LFALQFL
MTADGGNQLISVHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSPKKYFVRPNTGVVQPWDSCIIRVTLQAQRESPPDMQCKDKFLLQSTIVPSNTDVDDLPPDTFNKDSGKTIEECKLRVVYVSPSSAQGNLEDEGLVSATRSPDANSVSFGILLFALQFL
******NQLISVHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSPKKYFVRPNTGVVQPWDSCIIRVTLQAQRESPPDMQCKDKFLLQSTIVPSNTDVDDLPPDTFNKDSGKTIEECKLRVVYVSPS***********************************
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MTADGGNQLISVHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSPKKYFVRPNTGVVQPWDSCIIRVTLQAQRESPPDMQCKDKFLLQSTIVPSNTDVDDLPPDTFNKDSGKTIEECKLRVVYVSPSSAQGNLEDEGLVSATRSPDANSVSFGILLFALQFL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query167 2.2.26 [Sep-21-2011]
Q9LVU1220 Vesicle-associated protei yes no 0.832 0.631 0.776 8e-62
Q84WW5239 Vesicle-associated protei no no 0.724 0.506 0.565 3e-35
Q8VZ95256 Vesicle-associated protei no no 0.748 0.488 0.544 8e-35
Q9SHC8239 Vesicle-associated protei no no 0.754 0.527 0.531 2e-33
B9DHD7 386 Vesicle-associated protei no no 0.754 0.326 0.531 2e-31
Q9SYC9 571 Vesicle-associated protei no no 0.892 0.260 0.411 3e-28
O82213149 Vesicle-associated protei no no 0.778 0.872 0.430 1e-26
O60119 383 Vesicle-associated membra yes no 0.742 0.323 0.346 5e-13
Q10484 319 Uncharacterized protein C no no 0.646 0.338 0.387 3e-12
Q16943 260 Vesicle-associated membra N/A no 0.748 0.480 0.335 1e-10
>sp|Q9LVU1|VAP21_ARATH Vesicle-associated protein 2-1 OS=Arabidopsis thaliana GN=PVA21 PE=2 SV=1 Back     alignment and function desciption
 Score =  235 bits (600), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 108/139 (77%), Positives = 123/139 (88%)

Query: 1   MTADGGNQLISVHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSPKKYFVRPNTG 60
           MT  G NQLIS+ P+ELKF+FELEKQ +CDLKV N TE++VAFKVKTTSPKKYFVRPNTG
Sbjct: 1   MTGVGENQLISIQPDELKFLFELEKQSYCDLKVANKTENYVAFKVKTTSPKKYFVRPNTG 60

Query: 61  VVQPWDSCIIRVTLQAQRESPPDMQCKDKFLLQSTIVPSNTDVDDLPPDTFNKDSGKTIE 120
           V+QPWDSCIIRVTLQAQRE PPDMQCKDKFLLQSTIVP +TDVD+LP DTF KDSGKT+ 
Sbjct: 61  VIQPWDSCIIRVTLQAQREYPPDMQCKDKFLLQSTIVPPHTDVDELPQDTFTKDSGKTLT 120

Query: 121 ECKLRVVYVSPSSAQGNLE 139
           ECKL+V Y++PS+ Q + E
Sbjct: 121 ECKLKVSYITPSTTQRSSE 139
May play a role in vesicle trafficking.
Arabidopsis thaliana (taxid: 3702)
>sp|Q84WW5|VAP13_ARATH Vesicle-associated protein 1-3 OS=Arabidopsis thaliana GN=PVA13 PE=2 SV=1 Back     alignment and function description
>sp|Q8VZ95|VAP11_ARATH Vesicle-associated protein 1-1 OS=Arabidopsis thaliana GN=PVA11 PE=1 SV=1 Back     alignment and function description
>sp|Q9SHC8|VAP12_ARATH Vesicle-associated protein 1-2 OS=Arabidopsis thaliana GN=PVA12 PE=1 SV=1 Back     alignment and function description
>sp|B9DHD7|VAP22_ARATH Vesicle-associated protein 2-2 OS=Arabidopsis thaliana GN=PVA22 PE=1 SV=1 Back     alignment and function description
>sp|Q9SYC9|VAP14_ARATH Vesicle-associated protein 1-4 OS=Arabidopsis thaliana GN=PVA14 PE=2 SV=1 Back     alignment and function description
>sp|O82213|VAP31_ARATH Vesicle-associated protein 3-1 OS=Arabidopsis thaliana GN=PVA31 PE=3 SV=1 Back     alignment and function description
>sp|O60119|YH75_SCHPO Vesicle-associated membrane protein-associated protein C16G5.05c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC16G5.05c PE=1 SV=1 Back     alignment and function description
>sp|Q10484|YDFC_SCHPO Uncharacterized protein C17C9.12 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC17C9.12 PE=1 SV=2 Back     alignment and function description
>sp|Q16943|VP33_APLCA Vesicle-associated membrane protein/synaptobrevin-binding protein OS=Aplysia californica PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query167
255581982220 vesicle-associated membrane protein, put 0.904 0.686 0.836 2e-70
224071229222 predicted protein [Populus trichocarpa] 0.928 0.698 0.820 1e-68
449459000216 PREDICTED: vesicle-associated protein 2- 0.892 0.689 0.805 3e-65
449458998220 PREDICTED: vesicle-associated protein 2- 0.844 0.640 0.836 5e-65
224137924165 predicted protein [Populus trichocarpa] 0.958 0.969 0.753 2e-63
356563376222 PREDICTED: vesicle-associated protein 2- 0.922 0.693 0.746 4e-62
297790937220 vesicle-associated membrane family prote 0.832 0.631 0.791 2e-61
356510792223 PREDICTED: vesicle-associated protein 2- 0.922 0.690 0.740 3e-61
15238034220 VAMP (vesicle-associated membrane protei 0.832 0.631 0.776 4e-60
255635017159 unknown [Glycine max] 0.928 0.974 0.737 2e-59
>gi|255581982|ref|XP_002531789.1| vesicle-associated membrane protein, putative [Ricinus communis] gi|223528582|gb|EEF30603.1| vesicle-associated membrane protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  270 bits (690), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 128/153 (83%), Positives = 143/153 (93%), Gaps = 2/153 (1%)

Query: 1   MTADGGNQLISVHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSPKKYFVRPNTG 60
           MTA GGNQLISVHP+ELKFIFELEKQ FCDLKV+NNTEHHVAFKVKTTSPKKYFVRPNTG
Sbjct: 1   MTAGGGNQLISVHPDELKFIFELEKQSFCDLKVVNNTEHHVAFKVKTTSPKKYFVRPNTG 60

Query: 61  VVQPWDSCIIRVTLQAQRESPPDMQCKDKFLLQSTIVPSNTDVDDLPPDTFNKD-SGKTI 119
           V+QPWDSCIIRVTLQAQ+E+PPDMQCKDKFLLQSTIVP++TDVD+LPPDTF KD +GKT+
Sbjct: 61  VIQPWDSCIIRVTLQAQQEAPPDMQCKDKFLLQSTIVPAHTDVDELPPDTFTKDGTGKTV 120

Query: 120 EECKLRVVYVSPSSAQGNLEDEGLVSATRSPDA 152
           EECKLRV+YV+P SAQGN EDE L S+  +P+A
Sbjct: 121 EECKLRVLYVAP-SAQGNSEDEALRSSLTNPEA 152

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224071229|ref|XP_002303378.1| predicted protein [Populus trichocarpa] gi|222840810|gb|EEE78357.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449459000|ref|XP_004147234.1| PREDICTED: vesicle-associated protein 2-1-like isoform 2 [Cucumis sativus] gi|449523728|ref|XP_004168875.1| PREDICTED: vesicle-associated protein 2-1-like isoform 2 [Cucumis sativus] Back     alignment and taxonomy information
>gi|449458998|ref|XP_004147233.1| PREDICTED: vesicle-associated protein 2-1-like isoform 1 [Cucumis sativus] gi|449523726|ref|XP_004168874.1| PREDICTED: vesicle-associated protein 2-1-like isoform 1 [Cucumis sativus] Back     alignment and taxonomy information
>gi|224137924|ref|XP_002326474.1| predicted protein [Populus trichocarpa] gi|222833796|gb|EEE72273.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356563376|ref|XP_003549940.1| PREDICTED: vesicle-associated protein 2-1-like [Glycine max] Back     alignment and taxonomy information
>gi|297790937|ref|XP_002863353.1| vesicle-associated membrane family protein [Arabidopsis lyrata subsp. lyrata] gi|297309188|gb|EFH39612.1| vesicle-associated membrane family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|356510792|ref|XP_003524118.1| PREDICTED: vesicle-associated protein 2-1-like [Glycine max] Back     alignment and taxonomy information
>gi|15238034|ref|NP_199529.1| VAMP (vesicle-associated membrane protein) family protein [Arabidopsis thaliana] gi|30695123|ref|NP_851144.1| VAMP (vesicle-associated membrane protein) family protein [Arabidopsis thaliana] gi|75180692|sp|Q9LVU1.1|VAP21_ARATH RecName: Full=Vesicle-associated protein 2-1; AltName: Full=Plant VAP homolog 21; Short=AtPVA21; AltName: Full=VAMP-associated protein 2-1 gi|8809600|dbj|BAA97151.1| VAMP (vesicle-associated membrane protein)-associated protein-like [Arabidopsis thaliana] gi|14334974|gb|AAK59664.1| putative VAMP (vesicle-associated membrane protein)-associated protein [Arabidopsis thaliana] gi|17104633|gb|AAL34205.1| putative VAMP-associated protein [Arabidopsis thaliana] gi|21553413|gb|AAM62506.1| VAMP (vesicle-associated membrane protein)-associated protein-like [Arabidopsis thaliana] gi|332008097|gb|AED95480.1| VAMP (vesicle-associated membrane protein) family protein [Arabidopsis thaliana] gi|332008098|gb|AED95481.1| VAMP (vesicle-associated membrane protein) family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|255635017|gb|ACU17867.1| unknown [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query167
TAIR|locus:2171594220 AT5G47180 [Arabidopsis thalian 0.832 0.631 0.776 5.9e-57
TAIR|locus:2126921239 AT4G00170 [Arabidopsis thalian 0.802 0.560 0.532 2.8e-34
TAIR|locus:2101766256 VAP27-1 "VAMP/SYNAPTOBREVIN-AS 0.880 0.574 0.506 2e-33
TAIR|locus:2055557239 PVA12 "plant VAP homolog 12" [ 0.904 0.631 0.470 2.3e-32
TAIR|locus:2025585 386 VAP27-2 "vamp/synaptobrevin-as 0.754 0.326 0.531 8.8e-31
TAIR|locus:2008231 637 AT1G51270 [Arabidopsis thalian 0.880 0.230 0.433 1.9e-27
TAIR|locus:2061461149 AT2G23830 [Arabidopsis thalian 0.736 0.825 0.455 5.2e-26
UNIPROTKB|G4N022 285 MGG_06183 "Uncharacterized pro 0.742 0.435 0.357 2.9e-16
DICTYBASE|DDB_G0278773 310 DDB_G0278773 "major sperm prot 0.868 0.467 0.316 4.9e-15
UNIPROTKB|Q5U511243 vapb "LOC495400 protein" [Xeno 0.724 0.497 0.373 1.8e-14
TAIR|locus:2171594 AT5G47180 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 586 (211.3 bits), Expect = 5.9e-57, P = 5.9e-57
 Identities = 108/139 (77%), Positives = 123/139 (88%)

Query:     1 MTADGGNQLISVHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSPKKYFVRPNTG 60
             MT  G NQLIS+ P+ELKF+FELEKQ +CDLKV N TE++VAFKVKTTSPKKYFVRPNTG
Sbjct:     1 MTGVGENQLISIQPDELKFLFELEKQSYCDLKVANKTENYVAFKVKTTSPKKYFVRPNTG 60

Query:    61 VVQPWDSCIIRVTLQAQRESPPDMQCKDKFLLQSTIVPSNTDVDDLPPDTFNKDSGKTIE 120
             V+QPWDSCIIRVTLQAQRE PPDMQCKDKFLLQSTIVP +TDVD+LP DTF KDSGKT+ 
Sbjct:    61 VIQPWDSCIIRVTLQAQREYPPDMQCKDKFLLQSTIVPPHTDVDELPQDTFTKDSGKTLT 120

Query:   121 ECKLRVVYVSPSSAQGNLE 139
             ECKL+V Y++PS+ Q + E
Sbjct:   121 ECKLKVSYITPSTTQRSSE 139
GO:0005198 "structural molecule activity" evidence=IEA;ISS
GO:0005886 "plasma membrane" evidence=IDA
GO:0006612 "protein targeting to membrane" evidence=RCA
GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA
GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA
GO:0005783 "endoplasmic reticulum" evidence=IDA
TAIR|locus:2126921 AT4G00170 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2101766 VAP27-1 "VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2055557 PVA12 "plant VAP homolog 12" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2025585 VAP27-2 "vamp/synaptobrevin-associated protein 27-2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2008231 AT1G51270 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2061461 AT2G23830 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|G4N022 MGG_06183 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0278773 DDB_G0278773 "major sperm protein (MSP) domain-containing protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|Q5U511 vapb "LOC495400 protein" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9LVU1VAP21_ARATHNo assigned EC number0.77690.83230.6318yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00030565
hypothetical protein (223 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query167
pfam00635109 pfam00635, Motile_Sperm, MSP (Major sperm protein) 8e-31
COG5066242 COG5066, SCS2, VAMP-associated protein involved in 2e-17
>gnl|CDD|201362 pfam00635, Motile_Sperm, MSP (Major sperm protein) domain Back     alignment and domain information 
 Score =  107 bits (269), Expect = 8e-31
 Identities = 40/110 (36%), Positives = 62/110 (56%), Gaps = 3/110 (2%)

Query: 9   LISVHP-EELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSPKKYFVRPNTGVVQPWDS 67
           L+++ P + L F    +KQG   L + N ++  VAFKVKTT+PK+Y VRPN G+++P +S
Sbjct: 1   LLTIDPPDLLFFAAPGDKQGTSTLTLTNPSDKRVAFKVKTTNPKRYRVRPNYGILKPGES 60

Query: 68  CIIRVTLQAQRESPPDMQCKDKFLLQSTIVP-SNTDVDDLPPDTFNKDSG 116
             I +T Q   + P D + KDKF++Q T  P    D  +     +   + 
Sbjct: 61  VTITITRQPFDKEPGDPK-KDKFVIQYTEAPDDAKDAKEAFKRAWKNGAP 109

Major sperm proteins are involved in sperm motility. These proteins oligomerise to form filaments. This family contains many other proteins. Length = 109
>gnl|CDD|227398 COG5066, SCS2, VAMP-associated protein involved in inositol metabolism [Intracellular trafficking and secretion] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 167
COG5066242 SCS2 VAMP-associated protein involved in inositol 99.94
KOG0439218 consensus VAMP-associated protein involved in inos 99.93
PF00635109 Motile_Sperm: MSP (Major sperm protein) domain; In 99.9
PF14874102 PapD-like: Flagellar-associated PapD-like 98.72
PF00345122 PapD_N: Pili and flagellar-assembly chaperone, Pap 97.51
PRK09926246 putative chaperone protein EcpD; Provisional 95.84
PRK09918230 putative fimbrial chaperone protein; Provisional 95.78
PRK15299227 fimbrial chaperone protein StiB; Provisional 95.5
PRK15249253 fimbrial chaperone protein StbB; Provisional 95.34
PF0761045 DUF1573: Protein of unknown function (DUF1573); In 95.14
PRK15295226 fimbrial assembly chaperone SthB; Provisional 94.74
PRK15246233 fimbrial assembly chaperone StbE; Provisional 94.64
PRK11385236 putativi pili assembly chaperone; Provisional 94.41
PRK15211229 fimbrial chaperone protein PefD; Provisional 94.28
PF14646426 MYCBPAP: MYCBP-associated protein family 94.15
PRK15290243 lfpB fimbrial chaperone protein; Provisional 93.65
PRK15192234 fimbrial chaperone BcfG; Provisional 93.49
COG3121235 FimC P pilus assembly protein, chaperone PapD [Cel 93.46
PRK15218226 fimbrial chaperone protein PegB; Provisional 93.08
PRK15208228 long polar fimbrial chaperone LpfB; Provisional 93.07
PF11614118 FixG_C: IG-like fold at C-terminal of FixG, putati 93.05
PRK15188228 fimbrial chaperone protein BcfB; Provisional 92.42
PRK15195229 fimbrial chaperone protein FimC; Provisional 91.81
PRK15254239 fimbrial chaperone protein StdC; Provisional 91.81
PRK15224237 pili assembly chaperone protein SafB; Provisional 91.5
PRK15274257 putative periplasmic fimbrial chaperone protein St 90.7
PRK15253242 putative fimbrial assembly chaperone protein StcB; 90.28
PRK15233246 putative fimbrial chaperone protein SefB; Provisio 89.3
PF06280112 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR0 87.43
PRK15285250 putative fimbrial chaperone protein StfD; Provisio 87.19
PF00927107 Transglut_C: Transglutaminase family, C-terminal i 81.87
TIGR03079399 CH4_NH3mon_ox_B methane monooxygenase/ammonia mono 81.57
PF1063378 NPCBM_assoc: NPCBM-associated, NEW3 domain of alph 80.9
PRK15308234 putative fimbrial protein TcfA; Provisional 80.27
>COG5066 SCS2 VAMP-associated protein involved in inositol metabolism [Intracellular trafficking and secretion] Back     alignment and domain information 
Probab=99.94  E-value=1.6e-26  Score=185.16  Aligned_cols=124  Identities=36%  Similarity=0.586  Sum_probs=108.4

Q ss_pred             cEEEcCCeEEEeccCCceeEeEEEEEcCCCCeEEEEeccCCCccEEEeCCeeEECCCCeEEEEEEecCCCCCC-CCCCCC
Q 031011            9 LISVHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSPKKYFVRPNTGVVQPWDSCIIRVTLQAQRESP-PDMQCK   87 (167)
Q Consensus         9 lL~v~P~~L~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~p~~Y~VrP~~GiI~Pg~s~~I~V~l~~~~~~p-~~~~~~   87 (167)
                      .|+++|.- .|..|+....++.+.|.|.+..+|+||||||+|+.|+||||.|+|+|++++.|.|++++..+.| +|.+|+
T Consensus         2 aveisp~~-~fy~Plt~~ske~~sv~NnspepvgfKVKTTaPK~YcVRPN~g~Iep~stv~VeVilq~l~eEpapdfKCr   80 (242)
T COG5066           2 AVEISPQT-TFYVPLTNKSKEMFSVQNNSPEPVGFKVKTTAPKDYCVRPNMGLIEPMSTVEVEVILQGLTEEPAPDFKCR   80 (242)
T ss_pred             ceEecCce-EEecccccccceeeEeecCCCCceeEEeeccCCcceeEcCCCceeccCCeeEEEEEeeccccCCCCCcccc
Confidence            36677765 5656888888999999999999999999999999999999999999999999999999998887 789999


Q ss_pred             CeEEEEEEEcCCCCCCCCCCcccccccCCCcceEEEeEEEEcCCCCC
Q 031011           88 DKFLLQSTIVPSNTDVDDLPPDTFNKDSGKTIEECKLRVVYVSPSSA  134 (167)
Q Consensus        88 dkF~V~s~~~~~~~d~~~~~~~~f~~~~~~~v~e~kL~~~f~~~~~~  134 (167)
                      ||||||+...+......++. ++|....+..+.++||||+|......
T Consensus        81 dKFLiqs~~~~~~l~g~d~a-d~wt~~sk~~i~~rkIrcvyse~~is  126 (242)
T COG5066          81 DKFLIQSYRFDWRLSGSDFA-DHWTSSSKKPIWTRKIRCVYSEEEIS  126 (242)
T ss_pred             ceeEEEEeccChhhccchHH-HHHHhhccccchhhheeEEeeccccC
Confidence            99999999998865556664 78887777778999999999965543

>KOG0439 consensus VAMP-associated protein involved in inositol metabolism [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm Back     alignment and domain information
>PF14874 PapD-like: Flagellar-associated PapD-like Back     alignment and domain information
>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors Back     alignment and domain information
>PRK09926 putative chaperone protein EcpD; Provisional Back     alignment and domain information
>PRK09918 putative fimbrial chaperone protein; Provisional Back     alignment and domain information
>PRK15299 fimbrial chaperone protein StiB; Provisional Back     alignment and domain information
>PRK15249 fimbrial chaperone protein StbB; Provisional Back     alignment and domain information
>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini Back     alignment and domain information
>PRK15295 fimbrial assembly chaperone SthB; Provisional Back     alignment and domain information
>PRK15246 fimbrial assembly chaperone StbE; Provisional Back     alignment and domain information
>PRK11385 putativi pili assembly chaperone; Provisional Back     alignment and domain information
>PRK15211 fimbrial chaperone protein PefD; Provisional Back     alignment and domain information
>PF14646 MYCBPAP: MYCBP-associated protein family Back     alignment and domain information
>PRK15290 lfpB fimbrial chaperone protein; Provisional Back     alignment and domain information
>PRK15192 fimbrial chaperone BcfG; Provisional Back     alignment and domain information
>COG3121 FimC P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion] Back     alignment and domain information
>PRK15218 fimbrial chaperone protein PegB; Provisional Back     alignment and domain information
>PRK15208 long polar fimbrial chaperone LpfB; Provisional Back     alignment and domain information
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A Back     alignment and domain information
>PRK15188 fimbrial chaperone protein BcfB; Provisional Back     alignment and domain information
>PRK15195 fimbrial chaperone protein FimC; Provisional Back     alignment and domain information
>PRK15254 fimbrial chaperone protein StdC; Provisional Back     alignment and domain information
>PRK15224 pili assembly chaperone protein SafB; Provisional Back     alignment and domain information
>PRK15274 putative periplasmic fimbrial chaperone protein SteC; Provisional Back     alignment and domain information
>PRK15253 putative fimbrial assembly chaperone protein StcB; Provisional Back     alignment and domain information
>PRK15233 putative fimbrial chaperone protein SefB; Provisional Back     alignment and domain information
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PRK15285 putative fimbrial chaperone protein StfD; Provisional Back     alignment and domain information
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds Back     alignment and domain information
>TIGR03079 CH4_NH3mon_ox_B methane monooxygenase/ammonia monooxygenase, subunit B Back     alignment and domain information
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known Back     alignment and domain information
>PRK15308 putative fimbrial protein TcfA; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query167
3ikk_A127 Crystal Structure Analysis Of Msp Domain Length = 1 3e-11
2rr3_A130 Solution Structure Of The Complex Between Human Vap 8e-11
2cri_A147 Solution Structure Of The Msp Domain Of Mouse Vamp- 2e-10
1z9o_A128 1.9 Angstrom Crystal Structure Of The Rat Vap-a Msp 8e-10
1z9l_A128 1.7 Angstrom Crystal Structure Of The Rat Vap-A Msp 2e-09
1wic_A152 Solution Structure Of The Msp Domain Of Riken Cdna 8e-04
>pdb|3IKK|A Chain A, Crystal Structure Analysis Of Msp Domain Length = 127 Back     alignment and structure 
Iteration: 1

 Score = 64.3 bits (155), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 43/122 (35%), Positives = 70/122 (57%), Gaps = 5/122 (4%)
Query: 8   QLISVHPE-ELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSPKKYFVRPNTGVVQPWD 66
           Q++S+ P+ ELKF          +LK+ N T+ +V FKVKTT+P++Y VRPN+G++    
Sbjct: 8   QVLSLEPQHELKFRGPFTDVVTTNLKLGNPTDRNVCFKVKTTAPRRYCVRPNSGIIDAGA 67
Query: 67  SCIIRVTLQAQRESPPDMQCKDKFLLQSTIVPSNTDVDDLPPDTFNKDSGKTIEECKLRV 126
           S  + V LQ   +  P+ + K KF++QS   P  TD  D+    + +   + + + KLR 
Sbjct: 68  SINVSVMLQP-FDYDPNEKSKHKFMVQSMFAP--TDTSDMEA-VWKEAKPEDLMDSKLRC 123
Query: 127 VY 128
           V+
Sbjct: 124 VF 125
>pdb|2RR3|A Chain A, Solution Structure Of The Complex Between Human Vap-A Msp Domain And Human Osbp Ffat Motif Length = 130 Back     alignment and structure
>pdb|2CRI|A Chain A, Solution Structure Of The Msp Domain Of Mouse Vamp- Associated Proteina Length = 147 Back     alignment and structure
>pdb|1Z9O|A Chain A, 1.9 Angstrom Crystal Structure Of The Rat Vap-a Msp Homology Domain In Complex With The Rat Orp1 Ffat Motif Length = 128 Back     alignment and structure
>pdb|1Z9L|A Chain A, 1.7 Angstrom Crystal Structure Of The Rat Vap-A Msp Homology Domain Length = 128 Back     alignment and structure
>pdb|1WIC|A Chain A, Solution Structure Of The Msp Domain Of Riken Cdna 6030424e15 Length = 152 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query167
1wic_A152 Hypothetical protein riken cDNA 6030424E15; beta s 2e-37
1msp_A126 MSP, major sperm protein; cytoskeletal protein, ce 1e-36
1z9l_A128 Vesicle-associated membrane protein-associated pro 4e-34
2cri_A147 Vesicle-associated membrane protein-associated pro 8e-34
1m1s_A116 WR4; structural genomics, major sperm protein, bio 2e-30
1row_A109 SSP-19, MSP-domain protein like family member; bet 1e-21
>1wic_A Hypothetical protein riken cDNA 6030424E15; beta sandwich fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.11.2 Length = 152 Back     alignment and structure
 Score =  125 bits (314), Expect = 2e-37
 Identities = 34/129 (26%), Positives = 58/129 (44%), Gaps = 6/129 (4%)

Query: 7   NQLISVHP-EELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSPKKYFVRPNTGVVQPW 65
             L+ + P EEL F      +    + + N T++ VAFKV+TT+P+KY V+P+     P 
Sbjct: 16  GPLLHISPAEELYFGSIESGEKKTLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSCDPG 75

Query: 66  DSCIIRVTLQAQRESPPDMQCKDKFLLQSTIVPSNTDVDDLPPDTFNKD-SGKTIEECKL 124
            S  I V+          +  +D+FL+ +  +  ++         F K+     + E +L
Sbjct: 76  ASIDIIVSPHGG----LTVSAQDRFLIMAAEMEQSSGTGPAELSQFWKEVPRNKVMEHRL 131

Query: 125 RVVYVSPSS 133
           R   V  S 
Sbjct: 132 RCHTVESSK 140
>1msp_A MSP, major sperm protein; cytoskeletal protein, cell motility protein; 2.50A {Ascaris suum} SCOP: b.1.11.2 PDB: 3msp_A 2bvu_A 2msp_A 1grw_A Length = 126 Back     alignment and structure
>1z9l_A Vesicle-associated membrane protein-associated protein A; VAP-A, cytoplasmic domain, protein binding; HET: MSE; 1.70A {Rattus norvegicus} PDB: 1z9o_A 2rr3_A 3ikk_A Length = 128 Back     alignment and structure
>2cri_A Vesicle-associated membrane protein-associated protein A; VAP-A, VAP-33, beta sandwitch fold, structural genomics, NPPSFA; NMR {Mus musculus} Length = 147 Back     alignment and structure
>1m1s_A WR4; structural genomics, major sperm protein, bioinformatics, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: b.1.11.2 Length = 116 Back     alignment and structure
>1row_A SSP-19, MSP-domain protein like family member; beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Caenorhabditis elegans} SCOP: b.1.11.2 Length = 109 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query167
2cri_A147 Vesicle-associated membrane protein-associated pro 100.0
1z9l_A128 Vesicle-associated membrane protein-associated pro 100.0
1wic_A152 Hypothetical protein riken cDNA 6030424E15; beta s 100.0
1msp_A126 MSP, major sperm protein; cytoskeletal protein, ce 100.0
1row_A109 SSP-19, MSP-domain protein like family member; bet 99.95
1m1s_A116 WR4; structural genomics, major sperm protein, bio 99.95
2ys4_A122 Hydrocephalus-inducing protein homolog; hydin, PAP 98.58
2e6j_A112 Hydin protein; PAPD, structural genomics, NPPSFA, 98.35
3qbt_B140 Inositol polyphosphate 5-phosphatase OCRL-1; prote 98.23
3qis_A 366 Inositol polyphosphate 5-phosphatase OCRL-1; DENT 97.8
2qsv_A220 Uncharacterized protein; MCSG, structural genomics 97.06
2qsv_A220 Uncharacterized protein; MCSG, structural genomics 96.78
3q48_A257 Chaperone CUPB2; IG fold, periplasmic chaperone; 2 96.04
4ay0_A218 Chaperone protein CAF1M; amino acid motifs, bacter 94.9
2co7_B221 SAFB chaperone, putative fimbriae assembly chapero 94.81
2xg5_A218 PAPD, chaperone protein PAPD; chaperone, chaperone 94.76
4djm_A239 DRAB; chaperone, PILI; 2.52A {Escherichia coli} 94.3
1klf_A205 FIMC chaperone, chaperone protein FIMC; adhesin-ch 94.14
1l4i_A206 SFAE protein; periplasmic chaperone, immunoglobuli 93.48
3gfu_C224 Chaperone protein FAEE; immunoglobulin like fold, 92.6
2r39_A118 FIXG-related protein; structural GE PSI-2, protein 89.45
1yew_A382 Particulate methane monooxygenase, B subunit; memb 87.89
3rfr_A419 PMOB; membrane, oxidoreductase; 2.68A {Methylocyst 84.15
>2cri_A Vesicle-associated membrane protein-associated protein A; VAP-A, VAP-33, beta sandwitch fold, structural genomics, NPPSFA; NMR {Mus musculus} Back     alignment and structure
Probab=100.00  E-value=3e-35  Score=224.98  Aligned_cols=132  Identities=30%  Similarity=0.527  Sum_probs=115.8

Q ss_pred             CccEEEcCC-eEEEeccCCceeEeEEEEEcCCCCeEEEEeccCCCccEEEeCCeeEECCCCeEEEEEEecCCCCCCCCCC
Q 031011            7 NQLISVHPE-ELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSPKKYFVRPNTGVVQPWDSCIIRVTLQAQRESPPDMQ   85 (167)
Q Consensus         7 ~~lL~v~P~-~L~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~p~~Y~VrP~~GiI~Pg~s~~I~V~l~~~~~~p~~~~   85 (167)
                      .++|.|+|. +|.|++++++.+++.|+|+|+++++||||||||+|++|+|||+.|+|+||+++.|.|+|+++. .+++.+
T Consensus        12 ~~~L~i~P~~~L~F~~p~~~~~~~~l~L~N~s~~~VaFKVKTT~p~~y~VrP~~GiI~P~~s~~v~V~l~~~~-~~p~~~   90 (147)
T 2cri_A           12 EQILVLDPPSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGSIVTVSVMLQPFD-YDPNEK   90 (147)
T ss_dssp             CCCSEEESSSEEEEECCSSSCCCEEEEEECCSSSCEEEEEEESCTTSEEEESSEEECCTTCEEEEEEEECCCC-CCTTCC
T ss_pred             CCeEEECCCCeEEEeCCCCceEEEEEEEECCCCCcEEEEEECCCCccEEEcCCCcEECCCCeEEEEEEECCCc-CCcccc
Confidence            568999996 999999999999999999999999999999999999999999999999999999999999974 344567


Q ss_pred             CCCeEEEEEEEcCCCCCCCCCCcccccccCCCcceEEEeEEEEcCCCCCCCCCcccc
Q 031011           86 CKDKFLLQSTIVPSNTDVDDLPPDTFNKDSGKTIEECKLRVVYVSPSSAQGNLEDEG  142 (167)
Q Consensus        86 ~~dkF~V~s~~~~~~~d~~~~~~~~f~~~~~~~v~e~kL~~~f~~~~~~~~~~~~~~  142 (167)
                      ++|||+||++.++++.  .++ .++|++..+..++++||||+|+.|++.+...+.++
T Consensus        91 ~kDKFlVqs~~~~~~~--~d~-~~~wk~~~~~~i~e~kLrv~f~~p~~~~~~~~~~~  144 (147)
T 2cri_A           91 SKHKFMVQTIFAPPNI--SDM-EAVWKEAKPDELMDSKLRCVFEMPNENDKLNDSGP  144 (147)
T ss_dssp             SCCCEEEEEEECCTTC--CCH-HHHHHHSCTTTCEEEEEEEEEECSCCSSCCSCSSC
T ss_pred             CCCEEEEEEEEcCCCc--ccH-HHHhhcCCCCceEEEEEEEEEecCCCCcccCcccc
Confidence            8999999999998753  344 57888877888999999999999987765554443
>1z9l_A Vesicle-associated membrane protein-associated protein A; VAP-A, cytoplasmic domain, protein binding; HET: MSE; 1.70A {Rattus norvegicus} PDB: 1z9o_A 2rr3_A 3ikk_A Back     alignment and structure
>1wic_A Hypothetical protein riken cDNA 6030424E15; beta sandwich fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.11.2 Back     alignment and structure
>1msp_A MSP, major sperm protein; cytoskeletal protein, cell motility protein; 2.50A {Ascaris suum} SCOP: b.1.11.2 PDB: 3msp_A 2bvu_A 2msp_A 1grw_A Back     alignment and structure
>1row_A SSP-19, MSP-domain protein like family member; beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Caenorhabditis elegans} SCOP: b.1.11.2 Back     alignment and structure
>1m1s_A WR4; structural genomics, major sperm protein, bioinformatics, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: b.1.11.2 Back     alignment and structure
>2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3qbt_B Inositol polyphosphate 5-phosphatase OCRL-1; protein transport, vesicular trafficking, GTPase, LOWE syndr immunoglobulin fold, RAB8A, endocytosis; HET: GNP; 2.00A {Homo sapiens} Back     alignment and structure
>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1, RAB gtpases, APPL1, endocytic PATH golgi complex, hydrolase-protein binding complex; 2.30A {Homo sapiens} PDB: 2qv2_A Back     alignment and structure
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis} Back     alignment and structure
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis} Back     alignment and structure
>3q48_A Chaperone CUPB2; IG fold, periplasmic chaperone; 2.50A {Pseudomonas aeruginosa} Back     alignment and structure
>4ay0_A Chaperone protein CAF1M; amino acid motifs, bacterial capsules, bacterial proteins, gene expression regulation, molecular chaperones, binding; 1.52A {Yersinia pestis} PDB: 1p5v_A 1p5u_A 1z9s_A 2os7_A 3dos_A 3dpb_A 3dsn_A 4b0m_M 4az8_A 4ayf_A Back     alignment and structure
>2co7_B SAFB chaperone, putative fimbriae assembly chaperone; pilus subunit, adhesion, strand complementation, pathogenesis, fibril protein; 1.8A {Salmonella typhimurium} SCOP: b.1.11.1 b.7.2.1 PDB: 2co6_B Back     alignment and structure
>2xg5_A PAPD, chaperone protein PAPD; chaperone, chaperone-surface active protein complex; HET: EC2 EC5; 2.00A {Escherichia coli} PDB: 1pdk_A 2uy6_A 2uy7_A 2j2z_A 2xg4_A* 2w07_A* 3me0_A* 1n0l_A 2wmp_A 3dpa_A 2j7l_A 1qpp_A 1qpx_A Back     alignment and structure
>4djm_A DRAB; chaperone, PILI; 2.52A {Escherichia coli} Back     alignment and structure
>1klf_A FIMC chaperone, chaperone protein FIMC; adhesin-chaperone complex, mannose-bound, chaperone/adhesin complex complex; HET: MAN; 2.79A {Escherichia coli} SCOP: b.1.11.1 b.7.2.1 PDB: 1kiu_A* 3rfz_C 1qun_A 1bf8_A 1ze3_C 3bwu_C 3jwn_C Back     alignment and structure
>1l4i_A SFAE protein; periplasmic chaperone, immunoglobulin fold; 2.20A {Escherichia coli} SCOP: b.1.11.1 b.7.2.1 Back     alignment and structure
>3gfu_C Chaperone protein FAEE; immunoglobulin like fold, chaperone, fimbrium, immunoglobulin domain, periplasm, plasmid, cell adhesion; 1.99A {Escherichia coli} PDB: 3gew_B 3f65_A 3f6i_A 3f6l_A Back     alignment and structure
>2r39_A FIXG-related protein; structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, iron, iron-sulfur; 2.02A {Vibrio parahaemolyticus} Back     alignment and structure
>1yew_A Particulate methane monooxygenase, B subunit; membrane protein, beta barrel, oxidoreductase; 2.80A {Methylococcus capsulatus} PDB: 3rgb_A Back     alignment and structure
>3rfr_A PMOB; membrane, oxidoreductase; 2.68A {Methylocystis SP} PDB: 3chx_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 167
d1wica_152 b.1.11.2 (A:) MSP domain containing protein 2, Mos 5e-37
d1grwa_124 b.1.11.2 (A:) Major sperm protein, MSP {Nematode ( 4e-36
d1m1sa_109 b.1.11.2 (A:) WR4 {Nematode (Caenorhabditis elegan 4e-26
d1rowa_107 b.1.11.2 (A:) SSP-19 {Nematode (Caenorhabditis ele 5e-26
>d1wica_ b.1.11.2 (A:) MSP domain containing protein 2, Mospd2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 152 Back     information, alignment and structure

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: MSP-like
domain: MSP domain containing protein 2, Mospd2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  122 bits (308), Expect = 5e-37
 Identities = 34/127 (26%), Positives = 58/127 (45%), Gaps = 6/127 (4%)

Query: 8   QLISVHP-EELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSPKKYFVRPNTGVVQPWD 66
            L+ + P EEL F      +    + + N T++ VAFKV+TT+P+KY V+P+     P  
Sbjct: 17  PLLHISPAEELYFGSIESGEKKTLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSCDPGA 76

Query: 67  SCIIRVTLQAQRESPPDMQCKDKFLLQSTIVPSNTDVDDLPPDTFNKD-SGKTIEECKLR 125
           S  I V+          +  +D+FL+ +  +  ++         F K+     + E +LR
Sbjct: 77  SIDIIVSPHGG----LTVSAQDRFLIMAAEMEQSSGTGPAELSQFWKEVPRNKVMEHRLR 132

Query: 126 VVYVSPS 132
              V  S
Sbjct: 133 CHTVESS 139
>d1grwa_ b.1.11.2 (A:) Major sperm protein, MSP {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 124 Back     information, alignment and structure
>d1m1sa_ b.1.11.2 (A:) WR4 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 109 Back     information, alignment and structure
>d1rowa_ b.1.11.2 (A:) SSP-19 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 107 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query167
d1grwa_124 Major sperm protein, MSP {Nematode (Caenorhabditis 99.97
d1wica_152 MSP domain containing protein 2, Mospd2 {Mouse (Mu 99.97
d1m1sa_109 WR4 {Nematode (Caenorhabditis elegans) [TaxId: 623 99.93
d1rowa_107 SSP-19 {Nematode (Caenorhabditis elegans) [TaxId: 99.92
d2co7b1128 Periplasmic chaperone SafB {Salmonella typhimurium 96.67
d1p5va1141 Chaperone protein Caf1m {Yersinia pestis [TaxId: 6 96.46
d3bwuc1121 Periplasmic chaperone FimC {Escherichia coli [TaxI 95.7
d2j2za1124 Pilus chaperone PapD, N-domain {Escherichia coli [ 95.62
d1w8oa1103 Sialidase, "linker" domain {Micromonospora viridif 88.92
d1gyva_120 Gamma1-adaptin domain {Human (Homo sapiens) [TaxId 86.68
>d1grwa_ b.1.11.2 (A:) Major sperm protein, MSP {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: MSP-like
domain: Major sperm protein, MSP
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.97  E-value=1.3e-30  Score=192.70  Aligned_cols=119  Identities=20%  Similarity=0.331  Sum_probs=102.3

Q ss_pred             ccEEEcCC-eEEEeccCCceeEeEEEEEcCCCCeEEEEeccCCCccEEEeCCeeEECCCCeEEEEEEecCCCCCCCCCCC
Q 031011            8 QLISVHPE-ELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSPKKYFVRPNTGVVQPWDSCIIRVTLQAQRESPPDMQC   86 (167)
Q Consensus         8 ~lL~v~P~-~L~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~p~~Y~VrP~~GiI~Pg~s~~I~V~l~~~~~~p~~~~~   86 (167)
                      ..|.++|. +|+|++++++.+++.|+|+|+++++||||||||+|++|+|+|++|+|+||+++.|.|+|++... .++..+
T Consensus         5 ~~l~i~P~~~L~F~~p~~~~~~~~l~l~N~s~~~vafKvktt~p~~y~v~P~~G~i~p~~~~~i~V~~~~~~~-~~~~~~   83 (124)
T d1grwa_           5 GDIQTQPGTKIVFNAPYDDKHTYHIKVINSSARRIGYGIKTTNMKRLGVDPPCGVLDPKEAVLLAVSCDAFAF-GQEDTN   83 (124)
T ss_dssp             CCEEEESSSCEEEESCCSSCEEEEEEEEECSSSCEEEEEEESCTTTEEEESSEEEECTTCEEEEEEEECCCCG-GGSCCT
T ss_pred             CceEECCCCeEEEecCCCcEEEEEEEEECCCCCeEEEEEEeCCCceEEEECCCCEECCCCEEEEEEEEecCCC-CCcccC
Confidence            36999995 7999999999999999999999999999999999999999999999999999999999999743 344578


Q ss_pred             CCeEEEEEEEcCCCCCCCCCCcccccccCCCcceEEEeEEEEcC
Q 031011           87 KDKFLLQSTIVPSNTDVDDLPPDTFNKDSGKTIEECKLRVVYVS  130 (167)
Q Consensus        87 ~dkF~V~s~~~~~~~d~~~~~~~~f~~~~~~~v~e~kL~~~f~~  130 (167)
                      +|||+|+++.++++. .+++..+||+ . ...+.+++|+|.|.+
T Consensus        84 ~dkF~v~~~~~p~~~-~~~~~~~w~~-~-~~~~~~~~l~V~Y~p  124 (124)
T d1grwa_          84 NDRITVEWTNTPDGA-AKQFRREWFQ-G-DGMVRRKNLPIEYNP  124 (124)
T ss_dssp             TCEEEEEEEECCSSC-CSSCCGGGGT-S-SSCCEEEEEEEEEEC
T ss_pred             CceEEEEEEECCCcc-HHHHHHHHhc-c-CCceEEEEEEEEeCC
Confidence            999999999999763 4566544443 3 347789999999964
>d1wica_ b.1.11.2 (A:) MSP domain containing protein 2, Mospd2 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1m1sa_ b.1.11.2 (A:) WR4 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1rowa_ b.1.11.2 (A:) SSP-19 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d2co7b1 b.1.11.1 (B:8-135) Periplasmic chaperone SafB {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1p5va1 b.1.11.1 (A:7-147) Chaperone protein Caf1m {Yersinia pestis [TaxId: 632]} Back     information, alignment and structure
>d3bwuc1 b.1.11.1 (C:1-121) Periplasmic chaperone FimC {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2j2za1 b.1.11.1 (A:1-124) Pilus chaperone PapD, N-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1w8oa1 b.1.18.2 (A:403-505) Sialidase, "linker" domain {Micromonospora viridifaciens [TaxId: 1881]} Back     information, alignment and structure
>d1gyva_ b.1.10.2 (A:) Gamma1-adaptin domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure