Citrus Sinensis ID: 031023


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------
METSLRYGKDSKALRIYAKEKIPIDSNTRLQVHGELDTRVGAPSYVSAMIRHFYPDLSASFGLGVQYDKHEKLRYTVRGKKVFPVTSTGLLSFNIKGRCEVDKEFKQRKSRGAAEFSWSIFNFQKDQDVRFKLGYEVVDKVPYMQIRENNWTVNADANGRWNVRYDL
cccEEEEEccccEEEEEEEEEcccccccEEEEEEEEEccccccHHHHHHHHHHccccccccEEEEEEEEccEEEEEEEEEEEEEEcccccEEEEEccEEEEcccccccccEEEEEEEEEEcccccccEEEEEEcEEEEcccccEEEEEccEEEEEccccEEEEEEcc
cccEEEEcccccEEEEEEEEEccccccEEEEEEEEEEcccccHHHHHHHHHHHccHcEEEccEEEEEcccccEEEEEEEEEEEEcccccEEEEEEEEEEEcccccccccccEEEEEEEEEEEccccccEEEEEEEEccccccEEEEEEccEEEEEcccccEEEEEcc
metslrygkdskALRIYAkekipidsntrlqvhgeldtrvgapsyVSAMIRHFypdlsasfglgvqydkheklrytvrgkkvfpvtstgllsfnikgrcevDKEFKqrksrgaaefSWSIFNFQKDQDVRFKLGYEvvdkvpymqirennwtvnadangrwnvrydl
metslrygkdskalriyakekipidsntrlqvhGELDTRVGAPSYVSAMIRHFYPDLSASFGLGVQYDKHEKLRytvrgkkvfpvtstgllsfnikgrCEVDKEFKQRKsrgaaefswsifnfqkdqdvRFKLGYEVVDKVpymqirennwtvnadangrwnvrydl
METSLRYGKDSKALRIYAKEKIPIDSNTRLQVHGELDTRVGAPSYVSAMIRHFYPDLSASFGLGVQYDKHEKLRYTVRGKKVFPVTSTGLLSFNIKGRCEVDKEFKQRKSRGAAEFSWSIFNFQKDQDVRFKLGYEVVDKVPYMQIRENNWTVNADANGRWNVRYDL
*************LRIYAKEKIPIDSNTRLQVHGELDTRVGAPSYVSAMIRHFYPDLSASFGLGVQYDKHEKLRYTVRGKKVFPVTSTGLLSFNIKGRCEVDKEFKQRKSRGAAEFSWSIFNFQKDQDVRFKLGYEVVDKVPYMQIRENNWTVNADANGRWNVR***
***S***********IYAKEKIPIDSNTRLQVHGELDTRVGAPSYVSAMIRHFYPDLSASFGLGVQYDKHEKLRYTVRGKKVFPVTSTGLLSFNIKGRCE**************EFSWSIFNFQKDQDVRFKLGYEVVDKVPYMQIRENNWTVNADANGRWNVRYDL
METSLRYGKDSKALRIYAKEKIPIDSNTRLQVHGELDTRVGAPSYVSAMIRHFYPDLSASFGLGVQYDKHEKLRYTVRGKKVFPVTSTGLLSFNIKGRCEVDK*********AAEFSWSIFNFQKDQDVRFKLGYEVVDKVPYMQIRENNWTVNADANGRWNVRYDL
**TSLRYGKDSKALRIYAKEKIPIDSNTRLQVHGELDTRVGAPSYVSAMIRHFYPDLSASFGLGVQYDKHEKLRYTVRGKKVFPVTSTGLLSFNIKGRCEVDKEFKQRKSRGAAEFSWSIFNFQKDQDVRFKLGYEVVDKVPYMQIRENNWTVNADANGRWNVRYDL
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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METSLRYGKDSKALRIYAKEKIPIDSNTRLQVHGELDTRVGAPSYVSAMIRHFYPDLSASFGLGVQYDKHEKLRYTVRGKKVFPVTSTGLLSFNIKGRCEVDKEFKQRKSRGAAEFSWSIFNFQKDQDVRFKLGYEVVDKVPYMQIRENNWTVNADANGRWNVRYDL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query167 2.2.26 [Sep-21-2011]
Q9SM57177 Outer envelope pore prote N/A no 1.0 0.943 0.649 4e-64
Q9FPG2167 Outer envelope pore prote yes no 1.0 1.0 0.610 8e-63
Q6ID99167 Outer envelope pore prote no no 1.0 1.0 0.610 8e-61
Q6K965185 Outer envelope pore prote yes no 1.0 0.902 0.448 2e-41
B8AFI8185 Outer envelope pore prote N/A no 1.0 0.902 0.448 2e-41
>sp|Q9SM57|OEP21_PEA Outer envelope pore protein 21, chloroplastic OS=Pisum sativum GN=OEP21 PE=1 SV=1 Back     alignment and function desciption
 Score =  243 bits (620), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 115/177 (64%), Positives = 141/177 (79%), Gaps = 10/177 (5%)

Query: 1   METSLRYGKDSKALRIYAKEKIPIDSNTRLQVHGELDTRVGAPSYVSAMIRHFYPDLSAS 60
           METSLRYG DSKAL+I+AKEK+ ID+NT  QV G LDT+ G PS  SA+IRHFYP+ SA+
Sbjct: 1   METSLRYGGDSKALKIHAKEKLRIDTNTFFQVRGGLDTKTGQPSSGSALIRHFYPNFSAT 60

Query: 61  FGLGVQYDK----------HEKLRYTVRGKKVFPVTSTGLLSFNIKGRCEVDKEFKQRKS 110
            G+GV+YDK          ++KLRYTV  KK FPVT+ GL++F IKG C+VD++FK+ KS
Sbjct: 61  LGVGVRYDKQDSVGVRYAKNDKLRYTVLAKKTFPVTNDGLVNFKIKGGCDVDQDFKEWKS 120

Query: 111 RGAAEFSWSIFNFQKDQDVRFKLGYEVVDKVPYMQIRENNWTVNADANGRWNVRYDL 167
           RG AEFSW++FNFQKDQDVR ++GYE  ++VPY+QIRENNWT NAD  GRWNVRYDL
Sbjct: 121 RGGAEFSWNVFNFQKDQDVRLRIGYEAFEQVPYLQIRENNWTFNADYKGRWNVRYDL 177




Voltage-dependent rectifying anion channel that facilitates the translocation between chloroplast and cytoplasm of phosphorylated carbohydrates such as triosephosphate, 3-phosphoglycerate and inorganic phosphate (Pi) depending of ATP to triosephosphate ratio in the plastidial intermembrane space; in high triosephosphate/ATP conditions (e.g. photosynthesis), export of triosphophate from chloroplast (outward rectifying channels), but in high ATP/triosephosphate conditions (e.g. dark phase), import of phosphosolutes (inward rectifying channels).
Pisum sativum (taxid: 3888)
>sp|Q9FPG2|OP21B_ARATH Outer envelope pore protein 21B, chloroplastic OS=Arabidopsis thaliana GN=OEP21B PE=1 SV=1 Back     alignment and function description
>sp|Q6ID99|OP21A_ARATH Outer envelope pore protein 21A, chloroplastic OS=Arabidopsis thaliana GN=OEP21A PE=2 SV=1 Back     alignment and function description
>sp|Q6K965|OEP21_ORYSJ Outer envelope pore protein 21, chloroplastic OS=Oryza sativa subsp. japonica GN=OEP21 PE=2 SV=1 Back     alignment and function description
>sp|B8AFI8|OEP21_ORYSI Outer envelope pore protein 21, chloroplastic OS=Oryza sativa subsp. indica GN=OEP21 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query167
225457620167 PREDICTED: uncharacterized protein LOC10 1.0 1.0 0.814 2e-78
224083350167 predicted protein [Populus trichocarpa] 1.0 1.0 0.760 6e-75
255539296163 conserved hypothetical protein [Ricinus 0.976 1.0 0.773 9e-72
351727032167 uncharacterized protein LOC100527917 [Gl 1.0 1.0 0.748 1e-70
388499762167 unknown [Lotus japonicus] 1.0 1.0 0.736 9e-70
357467151178 Chloroplast channel forming outer membra 1.0 0.938 0.657 1e-63
75206752177 RecName: Full=Outer envelope pore protei 1.0 0.943 0.649 2e-62
147815140236 hypothetical protein VITISV_024653 [Viti 0.844 0.597 0.801 3e-62
449453001167 PREDICTED: outer envelope pore protein 2 1.0 1.0 0.670 5e-62
297839509167 hypothetical protein ARALYDRAFT_476797 [ 1.0 1.0 0.622 2e-61
>gi|225457620|ref|XP_002274272.1| PREDICTED: uncharacterized protein LOC100244433 [Vitis vinifera] gi|297745586|emb|CBI40751.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  296 bits (758), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 136/167 (81%), Positives = 154/167 (92%)

Query: 1   METSLRYGKDSKALRIYAKEKIPIDSNTRLQVHGELDTRVGAPSYVSAMIRHFYPDLSAS 60
           METSLRYG D+KALRI+AKEK PID  T L V GELDTR+GAPSYVSA+IRHFYPDLSAS
Sbjct: 1   METSLRYGGDTKALRIHAKEKFPIDLKTHLLVRGELDTRIGAPSYVSAVIRHFYPDLSAS 60

Query: 61  FGLGVQYDKHEKLRYTVRGKKVFPVTSTGLLSFNIKGRCEVDKEFKQRKSRGAAEFSWSI 120
            G+G+QYDKHEKLRY+VRGKK FPVT+ GLLSFN+KG+C+VDKEF++RKSRGAAEFSWSI
Sbjct: 61  LGVGLQYDKHEKLRYSVRGKKTFPVTTDGLLSFNVKGQCDVDKEFRERKSRGAAEFSWSI 120

Query: 121 FNFQKDQDVRFKLGYEVVDKVPYMQIRENNWTVNADANGRWNVRYDL 167
           FNFQ+DQDVR K+GYEV DKVPY+QIRENNWT+NAD NGRWNVR+DL
Sbjct: 121 FNFQRDQDVRIKVGYEVFDKVPYLQIRENNWTLNADINGRWNVRFDL 167




Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224083350|ref|XP_002306992.1| predicted protein [Populus trichocarpa] gi|222856441|gb|EEE93988.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255539296|ref|XP_002510713.1| conserved hypothetical protein [Ricinus communis] gi|223551414|gb|EEF52900.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|351727032|ref|NP_001235611.1| uncharacterized protein LOC100527917 [Glycine max] gi|255633566|gb|ACU17142.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|388499762|gb|AFK37947.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|357467151|ref|XP_003603860.1| Chloroplast channel forming outer membrane protein [Medicago truncatula] gi|355492908|gb|AES74111.1| Chloroplast channel forming outer membrane protein [Medicago truncatula] gi|388492016|gb|AFK34074.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|75206752|sp|Q9SM57.1|OEP21_PEA RecName: Full=Outer envelope pore protein 21, chloroplastic; AltName: Full=Chloroplastic outer envelope pore protein of 21 kDa; Short=gOEP21 gi|6066609|emb|CAB58442.1| chloroplast channel forming outer membrane protein [Pisum sativum] Back     alignment and taxonomy information
>gi|147815140|emb|CAN59778.1| hypothetical protein VITISV_024653 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449453001|ref|XP_004144247.1| PREDICTED: outer envelope pore protein 21, chloroplastic-like [Cucumis sativus] gi|449528277|ref|XP_004171131.1| PREDICTED: outer envelope pore protein 21, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297839509|ref|XP_002887636.1| hypothetical protein ARALYDRAFT_476797 [Arabidopsis lyrata subsp. lyrata] gi|297333477|gb|EFH63895.1| hypothetical protein ARALYDRAFT_476797 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query167
UNIPROTKB|Q9SM57177 OEP21 "Outer envelope pore pro 1.0 0.943 0.649 2.2e-59
TAIR|locus:505006225167 AT1G76405 "AT1G76405" [Arabido 1.0 1.0 0.610 6.6e-58
TAIR|locus:2825702167 AT1G20816 "AT1G20816" [Arabido 1.0 1.0 0.610 2e-56
UNIPROTKB|B8AFI8185 OEP21 "Outer envelope pore pro 0.952 0.859 0.455 8e-37
UNIPROTKB|Q6K965185 OEP21 "Outer envelope pore pro 0.952 0.859 0.455 8e-37
UNIPROTKB|Q9SM57 OEP21 "Outer envelope pore protein 21, chloroplastic" [Pisum sativum (taxid:3888)] Back     alignment and assigned GO terms
 Score = 609 (219.4 bits), Expect = 2.2e-59, P = 2.2e-59
 Identities = 115/177 (64%), Positives = 141/177 (79%)

Query:     1 METSLRYGKDSKALRIYAKEKIPIDSNTRLQVHGELDTRVGAPSYVSAMIRHFYPDLSAS 60
             METSLRYG DSKAL+I+AKEK+ ID+NT  QV G LDT+ G PS  SA+IRHFYP+ SA+
Sbjct:     1 METSLRYGGDSKALKIHAKEKLRIDTNTFFQVRGGLDTKTGQPSSGSALIRHFYPNFSAT 60

Query:    61 FGLGVQYDK----------HEKLRYTVRGKKVFPVTSTGLLSFNIKGRCEVDKEFKQRKS 110
              G+GV+YDK          ++KLRYTV  KK FPVT+ GL++F IKG C+VD++FK+ KS
Sbjct:    61 LGVGVRYDKQDSVGVRYAKNDKLRYTVLAKKTFPVTNDGLVNFKIKGGCDVDQDFKEWKS 120

Query:   111 RGAAEFSWSIFNFQKDQDVRFKLGYEVVDKVPYMQIRENNWTVNADANGRWNVRYDL 167
             RG AEFSW++FNFQKDQDVR ++GYE  ++VPY+QIRENNWT NAD  GRWNVRYDL
Sbjct:   121 RGGAEFSWNVFNFQKDQDVRLRIGYEAFEQVPYLQIRENNWTFNADYKGRWNVRYDL 177




GO:0008308 "voltage-gated anion channel activity" evidence=IDA
GO:0015288 "porin activity" evidence=IDA
GO:0031359 "integral to chloroplast outer membrane" evidence=IDA
GO:0034426 "etioplast membrane" evidence=IDA
GO:0044070 "regulation of anion transport" evidence=IDA
TAIR|locus:505006225 AT1G76405 "AT1G76405" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2825702 AT1G20816 "AT1G20816" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|B8AFI8 OEP21 "Outer envelope pore protein 21, chloroplastic" [Oryza sativa Indica Group (taxid:39946)] Back     alignment and assigned GO terms
UNIPROTKB|Q6K965 OEP21 "Outer envelope pore protein 21, chloroplastic" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9SM57OEP21_PEANo assigned EC number0.64971.00.9435N/Ano
Q9FPG2OP21B_ARATHNo assigned EC number0.61071.01.0yesno
Q6K965OEP21_ORYSJNo assigned EC number0.44861.00.9027yesno

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
GSVIVG00002916001
SubName- Full=Chromosome chr18 scaffold_137, whole genome shotgun sequence; (167 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00034758001
SubName- Full=Chromosome chr5 scaffold_72, whole genome shotgun sequence; (323 aa)
       0.415

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Conserved Domains Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00