Citrus Sinensis ID: 031035

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------
MAAPSDQKATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKAIILYSCLINCGNLI
cccccccccEEEccHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEccccccHHHHHcHHHHHHHHccccccccccccccHHHHHHHHHHHcccccccEEEEEccccccccHHHHHHccccccccccccccHHHHHHHcccccccccccHHHHHHHHHHHcccccc
ccccccccEEEEcHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEcccHHHHHHHHHHHHHHHHHccEEEEEEEcccccHHHHHHHHHHHHHcccccEEEEcccccccccHHHHHHcccHHHEcccccHHHHHHHHccccccccccHHHHHHHHEEHHHcccccc
maapsdqkatiiDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGiksfdidlpeqvSEAELISKVHelnvmpdvhgilvqlplpkhineekvlgeislekdvdgfhplnigklamkgrdplflpctpkaIILYSCLINCGNLI
maapsdqkatiidgkavaQTIRSEIAEEVRLLsekygkvpgLAVVIVggrkdsqsyVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKAIILYSCLINCGNLI
MAAPSDQKATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKAIILYSCLINCGNLI
**********IIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKAIILYSCLINCGN**
******Q***IIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKAIILYSCLINCGNL*
*********TIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKAIILYSCLINCGNLI
******QKATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKAIILYSCLINC****
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MAAPSDQKATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKAIILYSCLINCGNLI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query167 2.2.26 [Sep-21-2011]
A4IQS0 284 Bifunctional protein FolD yes no 0.868 0.510 0.554 2e-37
A5GAM5 280 Bifunctional protein FolD yes no 0.868 0.517 0.560 3e-37
Q39WH4 285 Bifunctional protein FolD yes no 0.868 0.508 0.540 3e-36
A0LE04 285 Bifunctional protein FolD yes no 0.868 0.508 0.517 9e-36
Q7MZH1 291 Bifunctional protein FolD yes no 0.934 0.536 0.525 1e-35
Q75TC1 284 Bifunctional protein FolD yes no 0.868 0.510 0.533 1e-35
B9M769 280 Bifunctional protein FolD yes no 0.868 0.517 0.547 2e-35
A7MJZ6 288 Bifunctional protein FolD yes no 0.868 0.503 0.530 2e-35
Q8Y7C5 284 Bifunctional protein FolD yes no 0.850 0.5 0.551 2e-35
A6T5R4 288 Bifunctional protein FolD yes no 0.868 0.503 0.530 2e-35
>sp|A4IQS0|FOLD_GEOTN Bifunctional protein FolD OS=Geobacillus thermodenitrificans (strain NG80-2) GN=folD PE=3 SV=1 Back     alignment and function desciption
 Score =  154 bits (390), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 82/148 (55%), Positives = 104/148 (70%), Gaps = 3/148 (2%)

Query: 9   ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVG 68
           A II G  +A+TIR+E+A+EV  L    G  PGLAV++VG    S SYV  K+KACAEVG
Sbjct: 3   AQIISGTELAKTIRAELADEVAKLKAN-GIEPGLAVILVGDDPASHSYVKGKQKACAEVG 61

Query: 69  IKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDG 128
           I+S     P  +SE EL++K+ ELN  P VHGILVQLPLP HI E  V+  I+ EKDVDG
Sbjct: 62  IRSLLYTFPATISEEELLAKIQELNADPTVHGILVQLPLPAHIREWSVIETIAPEKDVDG 121

Query: 129 FHPLNIGKLAMKGRDPLFLPCTPKAIIL 156
           FHP+N+GK+ M G+ P FLPCTP  +++
Sbjct: 122 FHPINVGKM-MIGQ-PAFLPCTPHGVLV 147
Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10-formyltetrahydrofolate.
Geobacillus thermodenitrificans (strain NG80-2) (taxid: 420246)
EC: 3EC: .EC: 5EC: .EC: 4EC: .EC: 9
>sp|A5GAM5|FOLD_GEOUR Bifunctional protein FolD OS=Geobacter uraniireducens (strain Rf4) GN=folD PE=3 SV=1 Back     alignment and function description
>sp|Q39WH4|FOLD2_GEOMG Bifunctional protein FolD 2 OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=folD2 PE=3 SV=1 Back     alignment and function description
>sp|A0LE04|FOLD_MAGSM Bifunctional protein FolD OS=Magnetococcus sp. (strain MC-1) GN=folD PE=3 SV=1 Back     alignment and function description
>sp|Q7MZH1|FOLD_PHOLL Bifunctional protein FolD OS=Photorhabdus luminescens subsp. laumondii (strain TT01) GN=folD PE=3 SV=1 Back     alignment and function description
>sp|Q75TC1|FOLD_GEOKA Bifunctional protein FolD OS=Geobacillus kaustophilus (strain HTA426) GN=folD PE=3 SV=1 Back     alignment and function description
>sp|B9M769|FOLD_GEOSF Bifunctional protein FolD OS=Geobacter sp. (strain FRC-32) GN=folD PE=3 SV=1 Back     alignment and function description
>sp|A7MJZ6|FOLD_CROS8 Bifunctional protein FolD OS=Cronobacter sakazakii (strain ATCC BAA-894) GN=folD PE=3 SV=1 Back     alignment and function description
>sp|Q8Y7C5|FOLD_LISMO Bifunctional protein FolD OS=Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) GN=folD PE=3 SV=1 Back     alignment and function description
>sp|A6T5R4|FOLD_KLEP7 Bifunctional protein FolD OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=folD PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query167
255582158 299 methylenetetrahydrofolate dehydrogenase, 0.916 0.511 0.915 7e-75
359479954 307 PREDICTED: c-1-tetrahydrofolate synthase 0.916 0.498 0.882 9e-73
297743853 271 unnamed protein product [Vitis vinifera] 0.916 0.564 0.882 2e-72
356572720 294 PREDICTED: c-1-tetrahydrofolate synthase 0.880 0.5 0.904 2e-71
255646414 294 unknown [Glycine max] 0.880 0.5 0.897 5e-71
118488628 299 unknown [Populus trichocarpa] 0.916 0.511 0.856 2e-70
388517953236 unknown [Lotus japonicus] 0.880 0.622 0.891 2e-70
358248138 294 uncharacterized protein LOC100783652 [Gl 0.880 0.5 0.884 3e-70
449469104 299 PREDICTED: c-1-tetrahydrofolate synthase 0.928 0.518 0.838 8e-70
4103987 294 5,10-methylenetetrahydrofolate dehydroge 0.868 0.493 0.882 1e-69
>gi|255582158|ref|XP_002531873.1| methylenetetrahydrofolate dehydrogenase, putative [Ricinus communis] gi|223528481|gb|EEF30510.1| methylenetetrahydrofolate dehydrogenase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  284 bits (727), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 140/153 (91%), Positives = 145/153 (94%)

Query: 1   MAAPSDQKATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMK 60
           MAAPSD KATIIDGKA+AQTIRSEIA+EVR LSEKYGKVPGLAVVIVG RKDSQSYVSMK
Sbjct: 1   MAAPSDHKATIIDGKAIAQTIRSEIADEVRQLSEKYGKVPGLAVVIVGNRKDSQSYVSMK 60

Query: 61  RKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEI 120
           RKACAEVGIKSFDI+LPEQVSEAELISKVHELN   DVHGILVQLPLPKHINEEKVL EI
Sbjct: 61  RKACAEVGIKSFDINLPEQVSEAELISKVHELNANTDVHGILVQLPLPKHINEEKVLSEI 120

Query: 121 SLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKA 153
           S+EKDVDGFHPLNIGKLAMKGR+PLFLPCTPK 
Sbjct: 121 SIEKDVDGFHPLNIGKLAMKGREPLFLPCTPKG 153

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359479954|ref|XP_002263128.2| PREDICTED: c-1-tetrahydrofolate synthase, cytoplasmic [Vitis vinifera] Back     alignment and taxonomy information
>gi|297743853|emb|CBI36823.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356572720|ref|XP_003554514.1| PREDICTED: c-1-tetrahydrofolate synthase, cytoplasmic-like [Glycine max] Back     alignment and taxonomy information
>gi|255646414|gb|ACU23686.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|118488628|gb|ABK96126.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information
>gi|388517953|gb|AFK47038.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|358248138|ref|NP_001239823.1| uncharacterized protein LOC100783652 [Glycine max] gi|255647576|gb|ACU24251.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|449469104|ref|XP_004152261.1| PREDICTED: c-1-tetrahydrofolate synthase, cytoplasmic-like [Cucumis sativus] gi|449484305|ref|XP_004156845.1| PREDICTED: c-1-tetrahydrofolate synthase, cytoplasmic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|4103987|gb|AAD01907.1| 5,10-methylenetetrahydrofolate dehydrogenase-5,10-methenyltetrahydrofolate cyclohydrolase [Pisum sativum] gi|6002383|emb|CAB56756.1| 5,10-methylenetetrahydrofolate dehydrogenase: 5,10-methenyltetrahydrofolate cyclohydrolase [Pisum sativum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query167
TAIR|locus:2082254 299 AT3G12290 [Arabidopsis thalian 0.928 0.518 0.819 3.7e-64
TAIR|locus:2127113 360 EMB3127 "EMBRYO DEFECTIVE 3127 0.904 0.419 0.596 5.6e-45
TAIR|locus:2064143 352 AT2G38660 [Arabidopsis thalian 0.946 0.448 0.537 7.3e-43
DICTYBASE|DDB_G0283121 292 DDB_G0283121 "methenyl tetrahy 0.868 0.496 0.544 2.4e-37
TIGR_CMR|SO_1792 284 SO_1792 "methylenetetrahydrofo 0.868 0.510 0.523 4.6e-34
TIGR_CMR|CPS_3791 284 CPS_3791 "FolD bifunctional pr 0.874 0.514 0.513 9.5e-34
UNIPROTKB|P24186 288 folD "FolD" [Escherichia coli 0.868 0.503 0.523 2.5e-33
TIGR_CMR|GSU_0862 285 GSU_0862 "folD bifunctional pr 0.868 0.508 0.5 5.2e-33
CGD|CAL0000766 946 MIS11 [Candida albicans (taxid 0.880 0.155 0.5 1.6e-32
UNIPROTKB|Q59SM8 946 MIS11 "Likely C1-tetrahydrofol 0.880 0.155 0.5 1.6e-32
TAIR|locus:2082254 AT3G12290 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 654 (235.3 bits), Expect = 3.7e-64, P = 3.7e-64
 Identities = 127/155 (81%), Positives = 140/155 (90%)

Query:     1 MAAPSDQKATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMK 60
             MA+ SD  A IIDGKA+A TIRSEIAEEVR LSEK+GKVPGLAVVIVG RKDSQ+YV+ K
Sbjct:     1 MASSSDHTAKIIDGKAIAHTIRSEIAEEVRGLSEKHGKVPGLAVVIVGSRKDSQTYVNTK 60

Query:    61 RKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEI 120
             RKACAEVGIKSFD+ LPE+VSEA+LISKVHELN  PDVHGILVQLPLPKHINEE +LG I
Sbjct:    61 RKACAEVGIKSFDVGLPEEVSEADLISKVHELNSNPDVHGILVQLPLPKHINEEHILGAI 120

Query:   121 SLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKAII 155
             S++KDVDGFHPLNIGKLAMKGR+PLFLPCTPK  +
Sbjct:   121 SIDKDVDGFHPLNIGKLAMKGREPLFLPCTPKGCL 155
GO:0000166 "nucleotide binding" evidence=IEA
GO:0003824 "catalytic activity" evidence=IEA;ISS
GO:0004488 "methylenetetrahydrofolate dehydrogenase (NADP+) activity" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0009396 "folic acid-containing compound biosynthetic process" evidence=IEA;ISS
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0009507 "chloroplast" evidence=IDA
GO:0005829 "cytosol" evidence=IDA
GO:0019344 "cysteine biosynthetic process" evidence=RCA
GO:0030244 "cellulose biosynthetic process" evidence=RCA
GO:0048193 "Golgi vesicle transport" evidence=RCA
TAIR|locus:2127113 EMB3127 "EMBRYO DEFECTIVE 3127" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2064143 AT2G38660 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0283121 DDB_G0283121 "methenyl tetrahydrofolate cyclohydrolase / NADP-dependent methylene H4F dehydrogenase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
TIGR_CMR|SO_1792 SO_1792 "methylenetetrahydrofolate dehydrogenase/methylenetetrahydrofolate cyclohydrolase" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
TIGR_CMR|CPS_3791 CPS_3791 "FolD bifunctional protein" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
UNIPROTKB|P24186 folD "FolD" [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_0862 GSU_0862 "folD bifunctional protein" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
CGD|CAL0000766 MIS11 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
UNIPROTKB|Q59SM8 MIS11 "Likely C1-tetrahydrofolate synthase" [Candida albicans SC5314 (taxid:237561)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.5.4.9LOW CONFIDENCE prediction!
3rd Layer3.5.4LOW CONFIDENCE prediction!
3rd Layer1.5.1LOW CONFIDENCE prediction!
4th Layer1.5.1.5LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query167
PLN02516 299 PLN02516, PLN02516, methylenetetrahydrofolate dehy 7e-99
PRK10792 285 PRK10792, PRK10792, bifunctional 5,10-methylene-te 1e-64
PLN02897 345 PLN02897, PLN02897, tetrahydrofolate dehydrogenase 4e-64
PLN02616 364 PLN02616, PLN02616, tetrahydrofolate dehydrogenase 4e-64
COG0190 283 COG0190, FolD, 5,10-methylene-tetrahydrofolate deh 2e-61
PRK14190 284 PRK14190, PRK14190, bifunctional 5,10-methylene-te 3e-55
PRK14188 296 PRK14188, PRK14188, bifunctional 5,10-methylene-te 7e-55
PRK14189 285 PRK14189, PRK14189, bifunctional 5,10-methylene-te 7e-55
pfam00763117 pfam00763, THF_DHG_CYH, Tetrahydrofolate dehydroge 2e-51
PRK14179 284 PRK14179, PRK14179, bifunctional 5,10-methylene-te 1e-50
PRK14191 285 PRK14191, PRK14191, bifunctional 5,10-methylene-te 1e-49
PRK14193 284 PRK14193, PRK14193, bifunctional 5,10-methylene-te 3e-49
PRK14176 287 PRK14176, PRK14176, bifunctional 5,10-methylene-te 5e-49
PRK14174 295 PRK14174, PRK14174, bifunctional 5,10-methylene-te 2e-47
PRK14184 286 PRK14184, PRK14184, bifunctional 5,10-methylene-te 3e-47
PRK14167 297 PRK14167, PRK14167, bifunctional 5,10-methylene-te 2e-46
PRK14185 293 PRK14185, PRK14185, bifunctional 5,10-methylene-te 9e-45
PRK14168 297 PRK14168, PRK14168, bifunctional 5,10-methylene-te 3e-44
PRK14183 281 PRK14183, PRK14183, bifunctional 5,10-methylene-te 7e-44
PRK14170 284 PRK14170, PRK14170, bifunctional 5,10-methylene-te 8e-43
PRK14186 297 PRK14186, PRK14186, bifunctional 5,10-methylene-te 2e-42
PRK14187 294 PRK14187, PRK14187, bifunctional 5,10-methylene-te 1e-40
PRK14178 279 PRK14178, PRK14178, bifunctional 5,10-methylene-te 1e-40
PRK14192 283 PRK14192, PRK14192, bifunctional 5,10-methylene-te 2e-40
PRK14182 282 PRK14182, PRK14182, bifunctional 5,10-methylene-te 1e-39
PRK14194 301 PRK14194, PRK14194, bifunctional 5,10-methylene-te 7e-39
PRK14172 278 PRK14172, PRK14172, bifunctional 5,10-methylene-te 1e-37
PRK14180 282 PRK14180, PRK14180, bifunctional 5,10-methylene-te 1e-37
PRK14175 286 PRK14175, PRK14175, bifunctional 5,10-methylene-te 2e-37
PRK14166 282 PRK14166, PRK14166, bifunctional 5,10-methylene-te 2e-35
PRK14177 284 PRK14177, PRK14177, bifunctional 5,10-methylene-te 4e-35
PRK14181 287 PRK14181, PRK14181, bifunctional 5,10-methylene-te 7e-34
PRK14169 282 PRK14169, PRK14169, bifunctional 5,10-methylene-te 2e-33
PRK14173 287 PRK14173, PRK14173, bifunctional 5,10-methylene-te 2e-33
PRK14171 288 PRK14171, PRK14171, bifunctional 5,10-methylene-te 1e-32
cd01080 168 cd01080, NAD_bind_m-THF_DH_Cyclohyd, NADP binding 4e-10
pfam02882 160 pfam02882, THF_DHG_CYH_C, Tetrahydrofolate dehydro 1e-04
>gnl|CDD|178131 PLN02516, PLN02516, methylenetetrahydrofolate dehydrogenase (NADP+) Back     alignment and domain information 
 Score =  286 bits (734), Expect = 7e-99
 Identities = 131/155 (84%), Positives = 142/155 (91%)

Query: 1   MAAPSDQKATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMK 60
           MA+PSD  A IIDGKA+A+ IRSEIAEEV  LSEK+GKVPGLAVVIVG RKDSQ+YV+MK
Sbjct: 1   MASPSDHVAQIIDGKAIAKAIRSEIAEEVAQLSEKHGKVPGLAVVIVGSRKDSQTYVNMK 60

Query: 61  RKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEI 120
           RKACAEVGIKSFD+DLPE +SEAELISKVHELN  PDVHGILVQLPLPKHINEEK+L EI
Sbjct: 61  RKACAEVGIKSFDVDLPENISEAELISKVHELNANPDVHGILVQLPLPKHINEEKILNEI 120

Query: 121 SLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKAII 155
           SLEKDVDGFHPLNIGKLAMKGR+PLFLPCTPK  +
Sbjct: 121 SLEKDVDGFHPLNIGKLAMKGREPLFLPCTPKGCL 155

Length = 299
>gnl|CDD|236760 PRK10792, PRK10792, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional Back     alignment and domain information
>gnl|CDD|178485 PLN02897, PLN02897, tetrahydrofolate dehydrogenase/cyclohydrolase, putative Back     alignment and domain information
>gnl|CDD|215332 PLN02616, PLN02616, tetrahydrofolate dehydrogenase/cyclohydrolase, putative Back     alignment and domain information
>gnl|CDD|223268 COG0190, FolD, 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism] Back     alignment and domain information
>gnl|CDD|184560 PRK14190, PRK14190, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional Back     alignment and domain information
>gnl|CDD|184558 PRK14188, PRK14188, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional Back     alignment and domain information
>gnl|CDD|184559 PRK14189, PRK14189, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional Back     alignment and domain information
>gnl|CDD|201431 pfam00763, THF_DHG_CYH, Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain Back     alignment and domain information
>gnl|CDD|237634 PRK14179, PRK14179, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional Back     alignment and domain information
>gnl|CDD|172679 PRK14191, PRK14191, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional Back     alignment and domain information
>gnl|CDD|237637 PRK14193, PRK14193, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional Back     alignment and domain information
>gnl|CDD|184553 PRK14176, PRK14176, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional Back     alignment and domain information
>gnl|CDD|172662 PRK14174, PRK14174, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional Back     alignment and domain information
>gnl|CDD|237635 PRK14184, PRK14184, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional Back     alignment and domain information
>gnl|CDD|184549 PRK14167, PRK14167, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional Back     alignment and domain information
>gnl|CDD|184556 PRK14185, PRK14185, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional Back     alignment and domain information
>gnl|CDD|237633 PRK14168, PRK14168, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional Back     alignment and domain information
>gnl|CDD|184555 PRK14183, PRK14183, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional Back     alignment and domain information
>gnl|CDD|172658 PRK14170, PRK14170, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional Back     alignment and domain information
>gnl|CDD|237636 PRK14186, PRK14186, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional Back     alignment and domain information
>gnl|CDD|172675 PRK14187, PRK14187, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional Back     alignment and domain information
>gnl|CDD|172666 PRK14178, PRK14178, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional Back     alignment and domain information
>gnl|CDD|184561 PRK14192, PRK14192, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional Back     alignment and domain information
>gnl|CDD|172670 PRK14182, PRK14182, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional Back     alignment and domain information
>gnl|CDD|172682 PRK14194, PRK14194, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional Back     alignment and domain information
>gnl|CDD|172660 PRK14172, PRK14172, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional Back     alignment and domain information
>gnl|CDD|172668 PRK14180, PRK14180, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional Back     alignment and domain information
>gnl|CDD|184552 PRK14175, PRK14175, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional Back     alignment and domain information
>gnl|CDD|172654 PRK14166, PRK14166, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional Back     alignment and domain information
>gnl|CDD|172665 PRK14177, PRK14177, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional Back     alignment and domain information
>gnl|CDD|172669 PRK14181, PRK14181, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional Back     alignment and domain information
>gnl|CDD|184550 PRK14169, PRK14169, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional Back     alignment and domain information
>gnl|CDD|184551 PRK14173, PRK14173, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional Back     alignment and domain information
>gnl|CDD|172659 PRK14171, PRK14171, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional Back     alignment and domain information
>gnl|CDD|133448 cd01080, NAD_bind_m-THF_DH_Cyclohyd, NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase Back     alignment and domain information
>gnl|CDD|217267 pfam02882, THF_DHG_CYH_C, Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 167
PLN02516 299 methylenetetrahydrofolate dehydrogenase (NADP+) 100.0
PRK14176 287 bifunctional 5,10-methylene-tetrahydrofolate dehyd 100.0
PRK14184 286 bifunctional 5,10-methylene-tetrahydrofolate dehyd 100.0
PRK14171 288 bifunctional 5,10-methylene-tetrahydrofolate dehyd 100.0
PRK14190 284 bifunctional 5,10-methylene-tetrahydrofolate dehyd 100.0
PRK14194 301 bifunctional 5,10-methylene-tetrahydrofolate dehyd 100.0
PRK14179 284 bifunctional 5,10-methylene-tetrahydrofolate dehyd 100.0
PRK14170 284 bifunctional 5,10-methylene-tetrahydrofolate dehyd 100.0
PRK10792 285 bifunctional 5,10-methylene-tetrahydrofolate dehyd 100.0
PRK14168 297 bifunctional 5,10-methylene-tetrahydrofolate dehyd 100.0
PRK14189 285 bifunctional 5,10-methylene-tetrahydrofolate dehyd 100.0
PRK14175 286 bifunctional 5,10-methylene-tetrahydrofolate dehyd 100.0
PRK14187 294 bifunctional 5,10-methylene-tetrahydrofolate dehyd 100.0
PLN02616 364 tetrahydrofolate dehydrogenase/cyclohydrolase, put 100.0
PRK14167 297 bifunctional 5,10-methylene-tetrahydrofolate dehyd 100.0
PLN02897 345 tetrahydrofolate dehydrogenase/cyclohydrolase, put 100.0
PRK14193 284 bifunctional 5,10-methylene-tetrahydrofolate dehyd 100.0
PRK14182 282 bifunctional 5,10-methylene-tetrahydrofolate dehyd 100.0
PRK14172 278 bifunctional 5,10-methylene-tetrahydrofolate dehyd 100.0
PRK14177 284 bifunctional 5,10-methylene-tetrahydrofolate dehyd 100.0
PRK14185 293 bifunctional 5,10-methylene-tetrahydrofolate dehyd 100.0
PRK14166 282 bifunctional 5,10-methylene-tetrahydrofolate dehyd 100.0
PRK14191 285 bifunctional 5,10-methylene-tetrahydrofolate dehyd 100.0
COG0190 283 FolD 5,10-methylene-tetrahydrofolate dehydrogenase 100.0
PRK14188 296 bifunctional 5,10-methylene-tetrahydrofolate dehyd 100.0
PRK14183 281 bifunctional 5,10-methylene-tetrahydrofolate dehyd 100.0
PRK14169 282 bifunctional 5,10-methylene-tetrahydrofolate dehyd 100.0
PRK14186 297 bifunctional 5,10-methylene-tetrahydrofolate dehyd 100.0
PRK14178 279 bifunctional 5,10-methylene-tetrahydrofolate dehyd 100.0
PRK14173 287 bifunctional 5,10-methylene-tetrahydrofolate dehyd 100.0
PRK14180 282 bifunctional 5,10-methylene-tetrahydrofolate dehyd 100.0
PRK14181 287 bifunctional 5,10-methylene-tetrahydrofolate dehyd 100.0
PRK14174 295 bifunctional 5,10-methylene-tetrahydrofolate dehyd 100.0
KOG4230 935 consensus C1-tetrahydrofolate synthase [Coenzyme t 100.0
PRK14192 283 bifunctional 5,10-methylene-tetrahydrofolate dehyd 100.0
KOG0089 309 consensus Methylenetetrahydrofolate dehydrogenase/ 100.0
PF00763117 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cycloh 100.0
PRK10423 327 transcriptional repressor RbsR; Provisional 95.68
PRK09526 342 lacI lac repressor; Reviewed 95.54
TIGR02417 327 fruct_sucro_rep D-fructose-responsive transcriptio 94.96
PRK11303 328 DNA-binding transcriptional regulator FruR; Provis 94.65
PRK10703 341 DNA-binding transcriptional repressor PurR; Provis 94.46
PRK10401 346 DNA-binding transcriptional regulator GalS; Provis 94.39
PRK10727 343 DNA-binding transcriptional regulator GalR; Provis 94.13
PRK10014 342 DNA-binding transcriptional repressor MalI; Provis 94.08
TIGR01481 329 ccpA catabolite control protein A. Catabolite cont 93.92
PRK09492 315 treR trehalose repressor; Provisional 93.57
PF00731150 AIRC: AIR carboxylase; InterPro: IPR000031 Phospho 93.23
PRK14987 331 gluconate operon transcriptional regulator; Provis 92.59
PRK11041 309 DNA-binding transcriptional regulator CytR; Provis 92.1
TIGR02405 311 trehalos_R_Ecol trehalose operon repressor, proteo 91.42
PF04392294 ABC_sub_bind: ABC transporter substrate binding pr 89.14
COG1609 333 PurR Transcriptional regulators [Transcription] 87.91
cd00578 452 L-fuc_L-ara-isomerases L-fucose isomerase (FucIase 87.5
cd06320 275 PBP1_allose_binding Periplasmic allose-binding dom 85.87
cd03557 484 L-arabinose_isomerase L-Arabinose isomerase (AI) c 84.41
cd06292 273 PBP1_LacI_like_10 Ligand-binding domain of unchara 84.14
cd06300 272 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-bi 83.64
cd06271 268 PBP1_AglR_RafR_like Ligand-binding domain of DNA t 83.43
cd01391269 Periplasmic_Binding_Protein_Type_1 Type 1 periplas 82.62
PRK10936 343 TMAO reductase system periplasmic protein TorT; Pr 82.55
PF13407 257 Peripla_BP_4: Periplasmic binding protein domain; 82.15
cd06296 270 PBP1_CatR_like Ligand-binding domain of a LacI-lik 81.15
cd06273 268 PBP1_GntR_like_1 This group includes the ligand-bi 80.99
cd06354 265 PBP1_BmpA_PnrA_like Periplasmic binding domain of 80.76
cd06286 260 PBP1_CcpB_like Ligand-binding domain of a novel tr 80.69
cd06267 264 PBP1_LacI_sugar_binding_like Ligand binding domain 80.65
cd06277 268 PBP1_LacI_like_1 Ligand-binding domain of uncharac 80.65
cd06312 271 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-bi 80.61
PF01220140 DHquinase_II: Dehydroquinase class II; InterPro: I 80.54
KOG3135203 consensus 1,4-benzoquinone reductase-like; Trp rep 80.54
PRK10339 327 DNA-binding transcriptional repressor EbgR; Provis 80.3
cd06289 268 PBP1_MalI_like Ligand-binding domain of MalI, a tr 80.09
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+) Back     alignment and domain information 
Probab=100.00  E-value=5.4e-55  Score=370.43  Aligned_cols=163  Identities=80%  Similarity=1.181  Sum_probs=157.5

Q ss_pred             CCCCccchhhhcccHHHHHHHHHHHHHHHHHHHhccCCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCC
Q 031035            1 MAAPSDQKATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQV   80 (167)
Q Consensus         1 ~~~~~~~m~~ildGk~la~~i~~~lk~~v~~l~~~~g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~   80 (167)
                      |+++++.|+++||||++|+++++++++++++|++++|++|+|++|++|+||+|..|+++|+|+|+++||+++.++||+++
T Consensus         1 ~~~~~~~~~~ildGk~vA~~i~~~l~~~v~~l~~~~g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~   80 (299)
T PLN02516          1 MASPSDHVAQIIDGKAIAKAIRSEIAEEVAQLSEKHGKVPGLAVVIVGSRKDSQTYVNMKRKACAEVGIKSFDVDLPENI   80 (299)
T ss_pred             CCCCccccCeEeehHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEEECCChhHHHHHHHHHHHHHHcCCEEEEEECCCCC
Confidence            89999999999999999999999999999999887789999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCCHHHHHhcCCCCCCcccCCcccHHHhhccCCCCCCCCchHHHHHHHhhh
Q 031035           81 SEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKAIILYSCL  160 (167)
Q Consensus        81 ~~~el~~~I~~lN~D~~V~GIlvq~PLP~~id~~~i~~~I~P~KDVDGl~~~NlG~l~~g~~~~~~~PcTp~avi~lL~~  160 (167)
                      |++++++.|++||+|++|||||||+|||+|+|+++++++|+|+||||||||.|+|+|+.|+.+++|+||||+||++||++
T Consensus        81 s~~el~~~I~~lN~D~~V~GIlvq~PlP~~id~~~i~~~I~p~KDVDGl~~~n~g~l~~~~~~~~~~PcTp~avi~lL~~  160 (299)
T PLN02516         81 SEAELISKVHELNANPDVHGILVQLPLPKHINEEKILNEISLEKDVDGFHPLNIGKLAMKGREPLFLPCTPKGCLELLSR  160 (299)
T ss_pred             CHHHHHHHHHHHhCCCCCCeEEEecCCCCCcCHHHHHhccCcccccCccCHhhHhhHhcCCCCCCCCCCCHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999998633478999999999999999


Q ss_pred             ccC
Q 031035          161 INC  163 (167)
Q Consensus       161 ~~~  163 (167)
                      |++
T Consensus       161 ~~i  163 (299)
T PLN02516        161 SGI  163 (299)
T ss_pred             hCC
Confidence            985

>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional Back     alignment and domain information
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional Back     alignment and domain information
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional Back     alignment and domain information
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional Back     alignment and domain information
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional Back     alignment and domain information
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional Back     alignment and domain information
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional Back     alignment and domain information
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional Back     alignment and domain information
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional Back     alignment and domain information
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional Back     alignment and domain information
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional Back     alignment and domain information
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional Back     alignment and domain information
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative Back     alignment and domain information
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional Back     alignment and domain information
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative Back     alignment and domain information
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional Back     alignment and domain information
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional Back     alignment and domain information
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional Back     alignment and domain information
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional Back     alignment and domain information
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional Back     alignment and domain information
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional Back     alignment and domain information
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional Back     alignment and domain information
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism] Back     alignment and domain information
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional Back     alignment and domain information
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional Back     alignment and domain information
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional Back     alignment and domain information
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional Back     alignment and domain information
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional Back     alignment and domain information
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional Back     alignment and domain information
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional Back     alignment and domain information
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional Back     alignment and domain information
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional Back     alignment and domain information
>KOG4230 consensus C1-tetrahydrofolate synthase [Coenzyme transport and metabolism] Back     alignment and domain information
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional Back     alignment and domain information
>KOG0089 consensus Methylenetetrahydrofolate dehydrogenase/methylenetetrahydrofolate cyclohydrolase [Coenzyme transport and metabolism] Back     alignment and domain information
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF) Back     alignment and domain information
>PRK10423 transcriptional repressor RbsR; Provisional Back     alignment and domain information
>PRK09526 lacI lac repressor; Reviewed Back     alignment and domain information
>TIGR02417 fruct_sucro_rep D-fructose-responsive transcription factor Back     alignment and domain information
>PRK11303 DNA-binding transcriptional regulator FruR; Provisional Back     alignment and domain information
>PRK10703 DNA-binding transcriptional repressor PurR; Provisional Back     alignment and domain information
>PRK10401 DNA-binding transcriptional regulator GalS; Provisional Back     alignment and domain information
>PRK10727 DNA-binding transcriptional regulator GalR; Provisional Back     alignment and domain information
>PRK10014 DNA-binding transcriptional repressor MalI; Provisional Back     alignment and domain information
>TIGR01481 ccpA catabolite control protein A Back     alignment and domain information
>PRK09492 treR trehalose repressor; Provisional Back     alignment and domain information
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE Back     alignment and domain information
>PRK14987 gluconate operon transcriptional regulator; Provisional Back     alignment and domain information
>PRK11041 DNA-binding transcriptional regulator CytR; Provisional Back     alignment and domain information
>TIGR02405 trehalos_R_Ecol trehalose operon repressor, proteobacterial Back     alignment and domain information
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems Back     alignment and domain information
>COG1609 PurR Transcriptional regulators [Transcription] Back     alignment and domain information
>cd00578 L-fuc_L-ara-isomerases L-fucose isomerase (FucIase) and L-arabinose isomerase (AI) family; composed of FucIase, AI and similar proteins Back     alignment and domain information
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis Back     alignment and domain information
>cd03557 L-arabinose_isomerase L-Arabinose isomerase (AI) catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion into D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source Back     alignment and domain information
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors Back     alignment and domain information
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily Back     alignment and domain information
>cd06271 PBP1_AglR_RafR_like Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators Back     alignment and domain information
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily Back     alignment and domain information
>PRK10936 TMAO reductase system periplasmic protein TorT; Provisional Back     alignment and domain information
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A Back     alignment and domain information
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation Back     alignment and domain information
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators Back     alignment and domain information
>cd06354 PBP1_BmpA_PnrA_like Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea Back     alignment and domain information
>cd06286 PBP1_CcpB_like Ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species Back     alignment and domain information
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily Back     alignment and domain information
>cd06277 PBP1_LacI_like_1 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors Back     alignment and domain information
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems Back     alignment and domain information
>PF01220 DHquinase_II: Dehydroquinase class II; InterPro: IPR001874 3-dehydroquinate dehydratase (4 Back     alignment and domain information
>KOG3135 consensus 1,4-benzoquinone reductase-like; Trp repressor binding protein-like/protoplast-secreted protein [General function prediction only] Back     alignment and domain information
>PRK10339 DNA-binding transcriptional repressor EbgR; Provisional Back     alignment and domain information
>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query167
4a26_A 300 The Crystal Structure Of Leishmania Major N5,N10- M 8e-40
1b0a_A 288 5,10, Methylene-Tetrahydropholate DehydrogenaseCYCL 2e-35
4a5o_A 286 Crystal Structure Of Pseudomonas Aeruginosa N5, N10 5e-34
3l07_A 285 Methylenetetrahydrofolate DehydrogenaseMETHENYLTETR 2e-30
3p2o_A 285 Crystal Structure Of Fold Bifunctional Protein From 2e-29
2c2x_A 281 Three Dimensional Structure Of Bifunctional Methyle 9e-29
1dia_A 306 Human Methylenetetrahydrofolate Dehydrogenase Cyclo 2e-26
1a4i_A 301 Human Tetrahydrofolate Dehydrogenase CYCLOHYDROLASE 2e-26
4b4u_A 303 Crystal Structure Of Acinetobacter Baumannii N5, N1 4e-26
3ngl_A 276 Crystal Structure Of Bifunctional 5,10-Methylenetet 3e-11
1edz_A 320 Structure Of The Nad-Dependent 5,10- Methylenetetra 2e-04
>pdb|4A26|A Chain A, The Crystal Structure Of Leishmania Major N5,N10- Methylenetetrahydrofolate DehydrogenaseCYCLOHYDROLASE Length = 300 Back     alignment and structure 
Iteration: 1

 Score =  159 bits (401), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 82/157 (52%), Positives = 108/157 (68%), Gaps = 3/157 (1%)
Query: 9   ATIIDGKAVAQTIRSEIAEEVRLLSEKYG-KVPGLAVVIVGGRKDSQSYVSMKRKACAEV 67
           A IIDGKA+A  IRSE+ ++V  L E YG +VPGLA +IVG R DS+ YV +K KA AEV
Sbjct: 6   AQIIDGKAIAAAIRSELKDKVAALRELYGGRVPGLASIIVGQRMDSKKYVQLKHKAAAEV 65
Query: 68  GIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVD 127
           G+ SF+++LPE +S+  L   V +LN  P+ HGI+VQLPLPKH+NE + + +I   KD D
Sbjct: 66  GMASFNVELPEDISQEVLEVNVEKLNNDPNCHGIIVQLPLPKHLNENRAIEKIHPHKDAD 125
Query: 128 GFHPLNIGKLAMKGRDPLFLPCTPKAIILYSCLINCG 164
              P+N+G L  KGR+P F PCT K +I+   L  CG
Sbjct: 126 ALLPVNVGLLHYKGREPPFTPCTAKGVIV--LLKRCG 160
>pdb|1B0A|A Chain A, 5,10, Methylene-Tetrahydropholate DehydrogenaseCYCLOHYDROLASE FROM E COLI Length = 288 Back     alignment and structure
>pdb|4A5O|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa N5, N10- Methylenetetrahydrofolate Dehydrogenase-Cyclohydrolase (Fold) Length = 286 Back     alignment and structure
>pdb|3L07|A Chain A, Methylenetetrahydrofolate DehydrogenaseMETHENYLTETRAHYDROFOLATE Cyclohydrolase, Putative Bifunctional Protein Fold From Francisella Tularensis. Length = 285 Back     alignment and structure
>pdb|3P2O|A Chain A, Crystal Structure Of Fold Bifunctional Protein From Campylobacter Jejuni Length = 285 Back     alignment and structure
>pdb|2C2X|A Chain A, Three Dimensional Structure Of Bifunctional Methylenetetrahydrofolate Dehydrogenase-Cyclohydrolase From Mycobacterium Tuberculosis Length = 281 Back     alignment and structure
>pdb|1DIA|A Chain A, Human Methylenetetrahydrofolate Dehydrogenase Cyclohydrolase Complexed With Nadp And Inhibitor Ly249543 Length = 306 Back     alignment and structure
>pdb|1A4I|A Chain A, Human Tetrahydrofolate Dehydrogenase CYCLOHYDROLASE Length = 301 Back     alignment and structure
>pdb|4B4U|A Chain A, Crystal Structure Of Acinetobacter Baumannii N5, N10-Methylenetetrahydrofolate Dehydrogenase-Cyclohydrolase (Fold) Complexed With Nadp Cofactor Length = 303 Back     alignment and structure
>pdb|3NGL|A Chain A, Crystal Structure Of Bifunctional 5,10-Methylenetetrahydrofolate Dehydrogenase CYCLOHYDROLASE FROM THERMOPLASMA ACIDOPHILUM Length = 276 Back     alignment and structure
>pdb|1EDZ|A Chain A, Structure Of The Nad-Dependent 5,10- Methylenetetrahydrofolate Dehydrogenase From Saccharomyces Cerevisiae Length = 320 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query167
4a26_A 300 Putative C-1-tetrahydrofolate synthase, cytoplasm; 1e-84
3l07_A 285 Bifunctional protein fold; structural genomics, ID 2e-81
4a5o_A 286 Bifunctional protein fold; oxidoreductase, hydrola 2e-81
1a4i_A 301 Methylenetetrahydrofolate dehydrogenase / methenyl 2e-81
1b0a_A 288 Protein (fold bifunctional protein); folate, dehyd 7e-81
3p2o_A 285 Bifunctional protein fold; structural genomics, ce 2e-80
2c2x_A 281 Methylenetetrahydrofolate dehydrogenase- methenylt 6e-78
3ngx_A 276 Bifunctional protein fold; methylenetetrahydrofola 4e-73
1edz_A 320 5,10-methylenetetrahydrofolate dehydrogenase; nucl 1e-70
>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major} Length = 300 Back     alignment and structure
 Score =  249 bits (639), Expect = 1e-84
 Identities = 79/148 (53%), Positives = 104/148 (70%), Gaps = 1/148 (0%)

Query: 9   ATIIDGKAVAQTIRSEIAEEVRLLSEKY-GKVPGLAVVIVGGRKDSQSYVSMKRKACAEV 67
           A IIDGKA+A  IRSE+ ++V  L E Y G+VPGLA +IVG R DS+ YV +K KA AEV
Sbjct: 6   AQIIDGKAIAAAIRSELKDKVAALRELYGGRVPGLASIIVGQRMDSKKYVQLKHKAAAEV 65

Query: 68  GIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVD 127
           G+ SF+++LPE +S+  L   V +LN  P+ HGI+VQLPLPKH+NE + + +I   KD D
Sbjct: 66  GMASFNVELPEDISQEVLEVNVEKLNNDPNCHGIIVQLPLPKHLNENRAIEKIHPHKDAD 125

Query: 128 GFHPLNIGKLAMKGRDPLFLPCTPKAII 155
              P+N+G L  KGR+P F PCT K +I
Sbjct: 126 ALLPVNVGLLHYKGREPPFTPCTAKGVI 153
>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis} Length = 285 Back     alignment and structure
>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1} Length = 286 Back     alignment and structure
>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A* Length = 301 Back     alignment and structure
>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2 Length = 288 Back     alignment and structure
>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp} Length = 285 Back     alignment and structure
>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A Length = 281 Back     alignment and structure
>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A Length = 276 Back     alignment and structure
>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A* Length = 320 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query167
4b4u_A 303 Bifunctional protein fold; oxidoreductase; HET: NA 100.0
1b0a_A 288 Protein (fold bifunctional protein); folate, dehyd 100.0
1a4i_A 301 Methylenetetrahydrofolate dehydrogenase / methenyl 100.0
4a26_A 300 Putative C-1-tetrahydrofolate synthase, cytoplasm; 100.0
4a5o_A 286 Bifunctional protein fold; oxidoreductase, hydrola 100.0
2c2x_A 281 Methylenetetrahydrofolate dehydrogenase- methenylt 100.0
3ngx_A 276 Bifunctional protein fold; methylenetetrahydrofola 100.0
3l07_A 285 Bifunctional protein fold; structural genomics, ID 100.0
3p2o_A 285 Bifunctional protein fold; structural genomics, ce 100.0
1edz_A 320 5,10-methylenetetrahydrofolate dehydrogenase; nucl 100.0
1nvt_A 287 Shikimate 5'-dehydrogenase; structural genomics, P 98.4
2d5c_A 263 AROE, shikimate 5-dehydrogenase; substrate, dimer, 98.33
1nyt_A 271 Shikimate 5-dehydrogenase; alpha/beta domains, WID 98.28
2hk9_A 275 Shikimate dehydrogenase; shikimate pathway, drug d 98.22
1p77_A 272 Shikimate 5-dehydrogenase; NADPH, oxidoreductase; 97.72
2egg_A 297 AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff 97.57
3dbi_A 338 Sugar-binding transcriptional regulator, LACI FAM; 94.33
3fbt_A 282 Chorismate mutase and shikimate 5-dehydrogenase fu 93.64
1jye_A 349 Lactose operon repressor; gene regulation, protein 93.61
1jx6_A 342 LUXP protein; protein-ligand complex, signaling pr 93.21
1qpz_A 340 PURA, protein (purine nucleotide synthesis repress 93.21
2hsg_A 332 Glucose-resistance amylase regulator; CCPA, transc 92.96
2o20_A 332 Catabolite control protein A; CCPA, transcriptiona 92.14
3h5o_A 339 Transcriptional regulator GNTR; transcription regu 91.73
3ksm_A 276 ABC-type sugar transport system, periplasmic COMP; 90.54
3rg8_A159 Phosphoribosylaminoimidazole carboxylase, PURE PR; 89.7
3jvd_A 333 Transcriptional regulators; structural genomics, P 89.69
3ctp_A 330 Periplasmic binding protein/LACI transcriptional; 89.58
3bil_A 348 Probable LACI-family transcriptional regulator; st 88.86
3h5t_A 366 Transcriptional regulator, LACI family; DNA-depend 88.55
3kjx_A 344 Transcriptional regulator, LACI family; LACL famil 88.14
3tnl_A 315 Shikimate dehydrogenase; structural genomics, cent 86.05
3o1i_D 304 Periplasmic protein TORT; ligand free, two compone 86.03
4grd_A173 N5-CAIR mutase, phosphoribosylaminoimidazole carbo 85.9
3e3m_A 355 Transcriptional regulator, LACI family; structural 85.9
3gbv_A 304 Putative LACI-family transcriptional regulator; NY 84.81
3h75_A 350 Periplasmic sugar-binding domain protein; protein 84.69
3oow_A166 Phosphoribosylaminoimidazole carboxylase,catalyic; 84.68
1xmp_A170 PURE, phosphoribosylaminoimidazole carboxylase; pu 83.31
2amj_A204 Modulator of drug activity B; oxidoreductase, mena 83.23
2ebu_A112 Replication factor C subunit 1; A/B/A 3 layers, pa 82.87
3brq_A 296 HTH-type transcriptional regulator ASCG; transcrip 82.37
3brs_A 289 Periplasmic binding protein/LACI transcriptional; 81.59
3k9c_A 289 Transcriptional regulator, LACI family protein; PS 81.5
3kuu_A174 Phosphoribosylaminoimidazole carboxylase catalyti 81.32
3iwt_A178 178AA long hypothetical molybdenum cofactor biosy 80.88
1dbq_A 289 Purine repressor; transcription regulation, DNA-bi 80.63
3lft_A 295 Uncharacterized protein; ABC, ATPase, cassette, L- 80.38
3l6u_A 293 ABC-type sugar transport system periplasmic compo; 80.37
3rot_A 297 ABC sugar transporter, periplasmic sugar binding; 80.29
3trh_A169 Phosphoribosylaminoimidazole carboxylase carboxylt 80.2
>4b4u_A Bifunctional protein fold; oxidoreductase; HET: NAP; 1.45A {Acinetobacter baumannii atcc 19606} PDB: 4b4v_A* 4b4w_A* Back     alignment and structure
Probab=100.00  E-value=1.5e-57  Score=385.35  Aligned_cols=156  Identities=38%  Similarity=0.649  Sum_probs=151.9

Q ss_pred             chhhhcccHHHHHHHHHHHHHHHHHHHhccCCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHH
Q 031035            7 QKATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELI   86 (167)
Q Consensus         7 ~m~~ildGk~la~~i~~~lk~~v~~l~~~~g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~   86 (167)
                      +|++|||||++|++|++++++++++|+++.|+.|+||+|+||+||||.+|+++|.|+|+++||+++.++||++++|+||+
T Consensus        21 ~Ma~ildGk~iA~~i~~~l~~~v~~l~~~~g~~P~LavIlVG~dpaS~~Yv~~K~k~c~~vGi~s~~~~lp~~~se~ell  100 (303)
T 4b4u_A           21 HMALVLDGRALAKQIEENLLVRVEALKAKTGRTPILATILVGDDGASATYVRMKGNACRRVGMDSLKIELPQETTTEQLL  100 (303)
T ss_dssp             -CCEECCHHHHHHHHHHHHHHHHHHHHHHHSCCCEEEEEEESCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCHHHHH
T ss_pred             CCCEEeehHHHHHHHHHHHHHHHHHHHHcCCCCCcEEEEEeCCCHHHHHHHHHHHHHHHHcCCeEEEEecCccCCHHHHH
Confidence            47899999999999999999999999988899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCCCcEEEEeCCCCCCCCHHHHHhcCCCCCCcccCCcccHHHhhccCCCCCCCCchHHHHHHHhhhccCC
Q 031035           87 SKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKAIILYSCLINCG  164 (167)
Q Consensus        87 ~~I~~lN~D~~V~GIlvq~PLP~~id~~~i~~~I~P~KDVDGl~~~NlG~l~~g~~~~~~~PcTp~avi~lL~~~~~~  164 (167)
                      +.|++||+|++|||||||+|||+|+|+++++++|+|+||||||||.|+|+|+.|  ++.|+||||.||++||++|++.
T Consensus       101 ~~I~~LN~D~~V~GIlVQlPLP~hid~~~i~~~I~p~KDVDG~hp~N~G~L~~g--~~~~~PcTp~gv~~lL~~~~i~  176 (303)
T 4b4u_A          101 AEIEKLNANPDVHGILLQHPVPAQIDERACFDAISLAKDVDGVTCLGFGRMAMG--EAAYGSATPAGIMTILKENNIE  176 (303)
T ss_dssp             HHHHHHHTCTTCCEEEECSSCCTTSCHHHHHHHSCGGGCTTCCCHHHHHHHHTT--CCCCCCHHHHHHHHHHHHTTCC
T ss_pred             HHHHHhcCCCCccEEEEeCCCccccChHHHHhccCcccccCccCcchHHHhcCC--CCcccCccHHHHHHHHHHHCCC
Confidence            999999999999999999999999999999999999999999999999999998  7899999999999999999873
>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2 Back     alignment and structure
>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A* Back     alignment and structure
>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major} Back     alignment and structure
>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1} Back     alignment and structure
>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A Back     alignment and structure
>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A Back     alignment and structure
>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis} Back     alignment and structure
>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp} Back     alignment and structure
>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A* Back     alignment and structure
>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5 Back     alignment and structure
>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A* Back     alignment and structure
>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5 Back     alignment and structure
>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A Back     alignment and structure
>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A* Back     alignment and structure
>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus} Back     alignment and structure
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12} Back     alignment and structure
>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum} Back     alignment and structure
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ... Back     alignment and structure
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A* Back     alignment and structure
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ... Back     alignment and structure
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A* Back     alignment and structure
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis} Back     alignment and structure
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum} Back     alignment and structure
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis} Back     alignment and structure
>3rg8_A Phosphoribosylaminoimidazole carboxylase, PURE PR; purine biosynthesis, lyase; 1.74A {Treponema denticola} SCOP: c.23.8.0 PDB: 3rgg_A* Back     alignment and structure
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum} Back     alignment and structure
>3ctp_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens} Back     alignment and structure
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032} Back     alignment and structure
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum} Back     alignment and structure
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi} Back     alignment and structure
>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A* Back     alignment and structure
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C Back     alignment and structure
>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia} Back     alignment and structure
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi} Back     alignment and structure
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis} Back     alignment and structure
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5} Back     alignment and structure
>3oow_A Phosphoribosylaminoimidazole carboxylase,catalyic; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.75A {Francisella tularensis subsp} SCOP: c.23.8.1 PDB: 3opq_A* Back     alignment and structure
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1 Back     alignment and structure
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A* Back     alignment and structure
>2ebu_A Replication factor C subunit 1; A/B/A 3 layers, parallel beta-sheet, DNA replication, clamp loader, RFC1, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli} Back     alignment and structure
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans} Back     alignment and structure
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii} Back     alignment and structure
>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structu genomics; 1.41A {Yersinia pestis} SCOP: c.23.8.1 PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A* Back     alignment and structure
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} Back     alignment and structure
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A Back     alignment and structure
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae} Back     alignment and structure
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum} Back     alignment and structure
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp} Back     alignment and structure
>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.20A {Coxiella burnetii} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 167
d1edza2146 c.58.1.2 (A:3-148) Tetrahydrofolate dehydrogenase/ 5e-41
d1a4ia2125 c.58.1.2 (A:2-126) Tetrahydrofolate dehydrogenase/ 7e-35
d1b0aa2121 c.58.1.2 (A:2-122) Tetrahydrofolate dehydrogenase/ 7e-35
d1a4ia1 170 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehy 2e-07
d1b0aa1 166 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehy 2e-07
>d1edza2 c.58.1.2 (A:3-148) Tetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 146 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Tetrahydrofolate dehydrogenase/cyclohydrolase
domain: Tetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  132 bits (334), Expect = 5e-41
 Identities = 28/149 (18%), Positives = 56/149 (37%), Gaps = 6/149 (4%)

Query: 9   ATIIDGKAVAQTIRSEIAEEVRLLSEKY-GKVPGLAVVIVGGRKDSQSYVSMKRKACAEV 67
              I    VA+T  +EI   V    + + G+ P L   +      ++ Y +  +K    +
Sbjct: 3   GRTILASKVAETFNTEIINNVEEYKKTHNGQGPLLVGFLANNDPAAKMYATWTQKTSESM 62

Query: 68  GIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVD 127
           G +     + ++     L   + + N    V+GI+V  P+  +  ++ +   +  EKDV+
Sbjct: 63  GFRYDLRVIEDKD---FLEEAIIQANGDDSVNGIMVYFPVFGNAQDQYLQQVVCKEKDVE 119

Query: 128 GFHPLNIGKLAMKGRDPLFLPCTPKAIIL 156
           G + +    L                 IL
Sbjct: 120 GLNHVYYQNLYH--NVRYLDKENRLKSIL 146
>d1a4ia2 c.58.1.2 (A:2-126) Tetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]} Length = 125 Back     information, alignment and structure
>d1b0aa2 c.58.1.2 (A:2-122) Tetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]} Length = 121 Back     information, alignment and structure
>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]} Length = 170 Back     information, alignment and structure
>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]} Length = 166 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query167
d1edza2146 Tetrahydrofolate dehydrogenase/cyclohydrolase {Bak 100.0
d1b0aa2121 Tetrahydrofolate dehydrogenase/cyclohydrolase {Esc 100.0
d1a4ia2125 Tetrahydrofolate dehydrogenase/cyclohydrolase {Hum 100.0
d7reqa2168 Methylmalonyl-CoA mutase alpha subunit, C-terminal 93.18
d1u11a_159 N5-CAIR mutase (phosphoribosylaminoimidazole carbo 90.54
d1o4va_169 N5-CAIR mutase (phosphoribosylaminoimidazole carbo 90.36
d1jyea_ 271 Lac-repressor (lacR) core (C-terminal domain) {Esc 89.35
d1xmpa_155 N5-CAIR mutase (phosphoribosylaminoimidazole carbo 88.21
d1qcza_163 N5-CAIR mutase (phosphoribosylaminoimidazole carbo 87.03
d1jx6a_ 338 Quorum-sensing signal (autoinducer-2) binding prot 86.69
d1tjya_ 316 AI-2 receptor LsrB {Salmonella typhi [TaxId: 90370 81.22
d1l7ba_92 NAD+-dependent DNA ligase, domain 4 {Thermus therm 80.02
>d1edza2 c.58.1.2 (A:3-148) Tetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Tetrahydrofolate dehydrogenase/cyclohydrolase
domain: Tetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5.8e-53  Score=323.12  Aligned_cols=142  Identities=19%  Similarity=0.196  Sum_probs=133.5

Q ss_pred             hhhcccHHHHHHHHHHHHHHHHHHHhcc-CCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHH
Q 031035            9 ATIIDGKAVAQTIRSEIAEEVRLLSEKY-GKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELIS   87 (167)
Q Consensus         9 ~~ildGk~la~~i~~~lk~~v~~l~~~~-g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~   87 (167)
                      .++|||+++|+++++++++++++|+++. |++|+|++|+||+||+|.+|+++|+|+|+++||+++..+   ..+++++++
T Consensus         3 gkiidG~~iA~~i~~~l~~~v~~l~~~~~g~~P~Lavilvg~d~aS~~Yv~~k~k~a~~~Gi~~~l~~---~~~~~~l~~   79 (146)
T d1edza2           3 GRTILASKVAETFNTEIINNVEEYKKTHNGQGPLLVGFLANNDPAAKMYATWTQKTSESMGFRYDLRV---IEDKDFLEE   79 (146)
T ss_dssp             CEECCHHHHHHHHHHHHHHHHHHHHHHTTTCCCEEEEEECCCCHHHHHHHHHHHHHHHHHTCEEEEEE---CSSGGGHHH
T ss_pred             CeeccHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCccccCc---cchHHHHHH
Confidence            3689999999999999999999998654 799999999999999999999999999999999987555   457899999


Q ss_pred             HHHHhcCCCCCcEEEEeCCCCCCCCHHHHHhcCCCCCCcccCCcccHHHhhccCCCCCCCCchHHHHH
Q 031035           88 KVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKAII  155 (167)
Q Consensus        88 ~I~~lN~D~~V~GIlvq~PLP~~id~~~i~~~I~P~KDVDGl~~~NlG~l~~g~~~~~~~PcTp~avi  155 (167)
                      .|++||+|++|||||||+|||+|+|+++++++|+|+||||||||.|+|+||.|  .+++.||||+||+
T Consensus        80 ~I~~LN~D~~V~GIlvQlPLP~~i~~~~i~~~I~p~KDVDGl~p~N~G~L~~~--~~~l~P~t~~~~i  145 (146)
T d1edza2          80 AIIQANGDDSVNGIMVYFPVFGNAQDQYLQQVVCKEKDVEGLNHVYYQNLYHN--VRYLDKENRLKSI  145 (146)
T ss_dssp             HHHHHHHCTTCCEEEECSCSSSSHHHHHHTTTSCTTTBTTCCSHHHHHHHHTT--CCBSSSSSCSBCC
T ss_pred             HHHHHhcchhhhhhhhcCCCCcccCHHHHHHhcCCCCCcCCCChHhHHHHHcC--CCCCCCCCccCcc
Confidence            99999999999999999999999999999999999999999999999999998  7899999999874
>d1b0aa2 c.58.1.2 (A:2-122) Tetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1a4ia2 c.58.1.2 (A:2-126) Tetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d7reqa2 c.23.6.1 (A:561-728) Methylmalonyl-CoA mutase alpha subunit, C-terminal domain {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]} Back     information, alignment and structure
>d1u11a_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) {Acetobacter aceti [TaxId: 435]} Back     information, alignment and structure
>d1o4va_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1jyea_ c.93.1.1 (A:) Lac-repressor (lacR) core (C-terminal domain) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1xmpa_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) {Bacillus anthracis [TaxId: 1392]} Back     information, alignment and structure
>d1qcza_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1jx6a_ c.93.1.1 (A:) Quorum-sensing signal (autoinducer-2) binding protein LuxP {Vibrio harveyi [TaxId: 669]} Back     information, alignment and structure
>d1tjya_ c.93.1.1 (A:) AI-2 receptor LsrB {Salmonella typhi [TaxId: 90370]} Back     information, alignment and structure
>d1l7ba_ c.15.1.2 (A:) NAD+-dependent DNA ligase, domain 4 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure