Citrus Sinensis ID: 031053

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160------
Protein Sequence
MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH
Secondary Structure (PSIPRED)
cEEEcccHHHHHHccccccccccccHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHcccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHccccccccccEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHccccccHHHHHHccc
Coil and Loop (DISEMBL)
mlgavgaiapeilgkaglipqeTALAWfqtgvippagtynywadpYTLFVLEMALMGFAehrrfqdwanpgsmgrqYFLGFEkylggsgdpaypggplfnplglgkdeksmkDFKLKEVKNGRLAMLAILGYFVQGLvtgvgpyqnlldhladpvnnnvltslkfh
Flexible Loop (DISEMBL)
MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH
Low Complexity Region (SEG)
MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYpggplfnplglgKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH
Disordered region (IsUnstruct)
****VGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGL*********FKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVL******
Disordered Region (DISOPRED)
MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK*H
Disordered Region (DISEMBL)
MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH
Disordered Region (DISPRO)
MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKF*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	166	2.2.26 [Sep-21-2011]
P27522	273	Chlorophyll a-b binding p	N/A	no	1.0	0.608	0.927	1e-86
Q32904	275	Chlorophyll a-b binding p	N/A	no	1.0	0.603	0.903	2e-84
P27521	251	Chlorophyll a-b binding p	no	no	0.885	0.585	0.417	3e-25
P10708	270	Chlorophyll a-b binding p	N/A	no	0.921	0.566	0.393	8e-25
P13869	270	Chlorophyll a-b binding p	N/A	no	0.921	0.566	0.4	1e-24
Q9SQL2	252	Chlorophyll a-b binding p	N/A	no	0.885	0.583	0.404	9e-24
P12470	266	Chlorophyll a-b binding p	N/A	no	0.855	0.533	0.4	2e-23
P15194	274	Chlorophyll a-b binding p	N/A	no	0.843	0.510	0.404	3e-23
P27518	265	Chlorophyll a-b binding p	N/A	no	0.837	0.524	0.419	3e-23
P07370	265	Chlorophyll a-b binding p	N/A	no	0.843	0.528	0.398	5e-23

>sp|P27522|CB13_SOLLC Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1

 Score =  318 bits (814), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 154/166 (92%), Positives = 158/166 (95%)

Query: 1   MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
           MLGA GAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWAD YTLFVLEMALMGFAE
Sbjct: 108 MLGAAGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADNYTLFVLEMALMGFAE 167

Query: 61  HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 120
           HRRFQDWA PGSMG+QYFLG EK LGGSGDPAYPGGPLFNPLG GKDEKSMK+ KLKE+K
Sbjct: 168 HRRFQDWAKPGSMGKQYFLGLEKGLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIK 227

Query: 121 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 166
           NGRLAMLAILGYF+Q LVTGVGPYQNLLDHLADPVNNNVLTSLKFH
Sbjct: 228 NGRLAMLAILGYFIQALVTGVGPYQNLLDHLADPVNNNVLTSLKFH 273

The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated.
Solanum lycopersicum (taxid: 4081)

>sp|Q32904|CB23_PEA Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1

 Score =  311 bits (796), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 150/166 (90%), Positives = 156/166 (93%)

Query: 1   MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
           MLGAVGAIAPE LGK GLIPQETALAWFQTGVIPPAGTYNYWAD YTLFVLEMALMGFAE
Sbjct: 110 MLGAVGAIAPEYLGKVGLIPQETALAWFQTGVIPPAGTYNYWADNYTLFVLEMALMGFAE 169

Query: 61  HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 120
           HRRFQDWA PGSMG+QYFLG EK  GGSG+PAYPGGP FNPLG GKDEKS+K+ KLKEVK
Sbjct: 170 HRRFQDWAKPGSMGKQYFLGLEKGFGGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVK 229

Query: 121 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 166
           NGRLAMLAILGYF+QGLVTGVGPYQNLLDH+ADPVNNNVLTSLKFH
Sbjct: 230 NGRLAMLAILGYFIQGLVTGVGPYQNLLDHVADPVNNNVLTSLKFH 275

May channel protons produced in the catalytic Mn center of water oxidation into the thylakoid lumen.

Pisum sativum (taxid: 3888)

>sp|P27521|CA4_ARATH Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=LHCA4 PE=1 SV=1

 Score =  114 bits (284), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 68/163 (41%), Positives = 94/163 (57%), Gaps = 16/163 (9%)

Query: 1   MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
           MLG  G + PE+  K G+I       W+       AG   Y+A   TLFV+E  L  + E
Sbjct: 104 MLGVAGMLLPEVFTKIGII---NVPEWYD------AGKEQYFASSSTLFVIEFILFHYVE 154

Query: 61  HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 120
            RR+QD  NPGS+ +     F++Y    G+  YPGG +FNPL     +++    K KE+ 
Sbjct: 155 IRRWQDIKNPGSVNQDPI--FKQYSLPKGEVGYPGG-IFNPLNFAPTQEA----KEKELA 207

Query: 121 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 163
           NGRLAMLA LG+ VQ  VTG GP++NLL HL+DP +N ++ + 
Sbjct: 208 NGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSDPWHNTIVQTF 250

The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated.

Arabidopsis thaliana (taxid: 3702)

>sp|P10708|CB12_SOLLC Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1

 Score =  112 bits (281), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 65/165 (39%), Positives = 91/165 (55%), Gaps = 12/165 (7%)

Query: 1   MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
           MLGA G   PE+L K G++      +W+       AG   Y+ D  TLF++E+ L+G+AE
Sbjct: 115 MLGAAGIFIPELLTKIGIL---NTPSWYT------AGEQEYFTDTTTLFIVELVLIGWAE 165

Query: 61  HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKS-MKDFKLKEV 119
            RR+ D   PG +         K  G   D  YPGG  F+PLG G    + +K+ + KE+
Sbjct: 166 GRRWADIIKPGCVNTDPIFPNNKLTGT--DVGYPGGLWFDPLGWGSGSPAKIKELRTKEI 223

Query: 120 KNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 164
           KNGRLAMLA++G + Q + TG GP  NL  HLADP +  +  +  
Sbjct: 224 KNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAAFS 268

The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated.

Solanum lycopersicum (taxid: 4081)

>sp|P13869|CB12_PETHY Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1

 Score =  112 bits (280), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 66/165 (40%), Positives = 90/165 (54%), Gaps = 12/165 (7%)

Query: 1   MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
           MLGA G   PE L K G++      +W+       AG   Y+ D  TLFV+E+ L+G+AE
Sbjct: 115 MLGAAGIFIPEFLTKIGVL---NTPSWYT------AGEQEYFTDTTTLFVIELVLIGWAE 165

Query: 61  HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKS-MKDFKLKEV 119
            RR+ D   PG +         K  G   D  YPGG  F+PLG G    + +K+ + KE+
Sbjct: 166 GRRWADIIKPGCVNTDPIFPNNKLTGT--DVGYPGGLWFDPLGWGSGSPAKIKELRTKEI 223

Query: 120 KNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 164
           KNGRLAMLA++G + Q + TG GP  NL  HLADP +  +  +  
Sbjct: 224 KNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAAFS 268

The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated.

Petunia hybrida (taxid: 4102)

>sp|Q9SQL2|CB24_PEA Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1

 Score =  109 bits (272), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 66/163 (40%), Positives = 93/163 (57%), Gaps = 16/163 (9%)

Query: 1   MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
           MLG  G + PE+    G+I       W+       AG   Y+A   TLFV+E  L  + E
Sbjct: 103 MLGVAGMLLPEVFTSIGII---NVPKWYA------AGKEEYFASSSTLFVIEFILSHYVE 153

Query: 61  HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 120
            RR+QD  NPGS+ +     F++Y   +G+  YPGG +FNPL      ++    K KE+ 
Sbjct: 154 IRRWQDIKNPGSVNQDPI--FKQYSLPAGEVGYPGG-IFNPLNFAPTLEA----KEKEIA 206

Query: 121 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 163
           NGRLAMLA LG+ +Q  VTG GP+ NLL H++DP +N ++ +L
Sbjct: 207 NGRLAMLAFLGFIIQHNVTGKGPFDNLLQHISDPWHNTIVQTL 249

May channel protons produced in the catalytic Mn center of water oxidation into the thylakoid lumen.

Pisum sativum (taxid: 3888)

>sp|P12470|CB25_NICPL Chlorophyll a-b binding protein E, chloroplastic OS=Nicotiana plumbaginifolia GN=CABE PE=3 SV=1

 Score =  107 bits (268), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 68/170 (40%), Positives = 93/170 (54%), Gaps = 28/170 (16%)

Query: 1   MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
           MLGA+G + PE+L + G+   E    WF+ G  I   G  +Y  +P          ++  
Sbjct: 107 MLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWAC 164

Query: 52  EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
           ++ LMG  E  R                   + LG   DP YPGG  F+PLGL +D ++ 
Sbjct: 165 QVVLMGAVEGYRVAG----------------EPLGEVVDPLYPGGS-FDPLGLAEDPEAF 207

Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLT 161
            + K+KE+KNGRLAM ++ G+FVQ LVTG GP +NL DHLADPVNNN  +
Sbjct: 208 AELKVKEIKNGRLAMFSMFGFFVQALVTGKGPLENLADHLADPVNNNAWS 257

The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated.

Nicotiana plumbaginifolia (taxid: 4092)

>sp|P15194|CB2B_PINSY Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1

 Score =  107 bits (268), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 68/168 (40%), Positives = 92/168 (54%), Gaps = 28/168 (16%)

Query: 1   MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
           MLGA+G + PE+L + G+   E    WF+ G  I   G  +Y  +P          ++  
Sbjct: 115 MLGALGCVFPELLARNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWAC 172

Query: 52  EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
           ++ LMG  E  R      P              LG   DP YPGG  F+PLGL +D ++ 
Sbjct: 173 QVILMGAVEGYRIA--GGP--------------LGEVTDPIYPGGS-FDPLGLAEDPEAF 215

Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
            + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN 
Sbjct: 216 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNA 263

The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated.

Pinus sylvestris (taxid: 3349)

>sp|P27518|CB21_GOSHI Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2

 Score =  107 bits (267), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 70/167 (41%), Positives = 90/167 (53%), Gaps = 28/167 (16%)

Query: 1   MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
           MLGA+G + PEIL K G+   E    WF+ G  I   G  +Y  +P          ++  
Sbjct: 106 MLGALGCVFPEILSKNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAC 163

Query: 52  EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
           ++ LMGF E  R      P              LG   DP YPGG  F+PLGL  D  + 
Sbjct: 164 QVVLMGFVEGYRVG--GGP--------------LGEGLDPIYPGGA-FDPLGLADDPDAF 206

Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 158
            + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPV NN
Sbjct: 207 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADPVANN 253

The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated.

Gossypium hirsutum (taxid: 3635)

>sp|P07370|CB2B_SOLLC Chlorophyll a-b binding protein 1B, chloroplastic OS=Solanum lycopersicum GN=CAB1B PE=3 SV=1

 Score =  106 bits (265), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 67/168 (39%), Positives = 92/168 (54%), Gaps = 28/168 (16%)

Query: 1   MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
           MLGA+G + PE+L + G+   E    WF+ G  I   G  +Y  +P          ++  
Sbjct: 106 MLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWAC 163

Query: 52  EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
           ++ LMG  E  R       G +G               DP YPGG  F+PLGL +D ++ 
Sbjct: 164 QVVLMGAVEGYRIAG----GPLGEVV------------DPLYPGGS-FDPLGLAEDPEAF 206

Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
            + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN 
Sbjct: 207 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNA 254

The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated.

Solanum lycopersicum (taxid: 4081)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	166
226872	273	chlorophyll a/b binding protein	1.0	0.608	0.927	5e-85
115813	273	RecName: Full=Chlorophyll a-b binding pr	1.0	0.608	0.927	6e-85
118489937	274	unknown [Populus trichocarpa x Populus d	1.0	0.605	0.921	1e-84
255567170	273	chlorophyll A/B binding protein, putativ	1.0	0.608	0.927	2e-84
224131950	274	light-harvesting complex I protein Lhca3	1.0	0.605	0.915	7e-84
116519121	275	type III chlorophyll a/b-binding protein	1.0	0.603	0.903	1e-83
116519125	275	type III chlorophyll a/b-binding protein	1.0	0.603	0.897	3e-83
75220641	275	RecName: Full=Chlorophyll a-b binding pr	1.0	0.603	0.903	8e-83
225436257	274	PREDICTED: chlorophyll a-b binding prote	1.0	0.605	0.903	2e-82
449442612	273	PREDICTED: chlorophyll a-b binding prote	1.0	0.608	0.891	2e-82

>gi|226872|prf||1609235A chlorophyll a/b binding protein

 Score =  318 bits (815), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 154/166 (92%), Positives = 158/166 (95%)

Query: 1   MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
           MLGA GAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWAD YTLFVLEMALMGFAE
Sbjct: 108 MLGAAGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADNYTLFVLEMALMGFAE 167

Query: 61  HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 120
           HRRFQDWA PGSMG+QYFLG EK LGGSGDPAYPGGPLFNPLG GKDEKSMK+ KLKE+K
Sbjct: 168 HRRFQDWAKPGSMGKQYFLGLEKGLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIK 227

Query: 121 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 166
           NGRLAMLAILGYF+Q LVTGVGPYQNLLDHLADPVNNNVLTSLKFH
Sbjct: 228 NGRLAMLAILGYFIQALVTGVGPYQNLLDHLADPVNNNVLTSLKFH 273

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115813|sp|P27522.1|CB13_SOLLC RecName: Full=Chlorophyll a-b binding protein 8, chloroplastic; AltName: Full=LHCI type III CAB-8; Flags: Precursor gi|19182|emb|CAA33330.1| Type III chlorophyll a/b-binding protein [Solanum lycopersicum]

 Score =  318 bits (814), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 154/166 (92%), Positives = 158/166 (95%)

Query: 1   MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
           MLGA GAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWAD YTLFVLEMALMGFAE
Sbjct: 108 MLGAAGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADNYTLFVLEMALMGFAE 167

Query: 61  HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 120
           HRRFQDWA PGSMG+QYFLG EK LGGSGDPAYPGGPLFNPLG GKDEKSMK+ KLKE+K
Sbjct: 168 HRRFQDWAKPGSMGKQYFLGLEKGLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIK 227

Query: 121 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 166
           NGRLAMLAILGYF+Q LVTGVGPYQNLLDHLADPVNNNVLTSLKFH
Sbjct: 228 NGRLAMLAILGYFIQALVTGVGPYQNLLDHLADPVNNNVLTSLKFH 273

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118489937|gb|ABK96765.1| unknown [Populus trichocarpa x Populus deltoides]

 Score =  317 bits (811), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 153/166 (92%), Positives = 160/166 (96%)

Query: 1   MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
           MLGAVGAIAPEILGKAGLIP ETAL WF+TGVIPPAGTY+YWADPYTLFV EMALMGFAE
Sbjct: 109 MLGAVGAIAPEILGKAGLIPPETALPWFRTGVIPPAGTYSYWADPYTLFVFEMALMGFAE 168

Query: 61  HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 120
           HRRFQDWA PGSMG+QYFLGFEKYLGGSG+PAYPGGPLFNPLG GKDEKS+KD KLKEVK
Sbjct: 169 HRRFQDWAKPGSMGKQYFLGFEKYLGGSGEPAYPGGPLFNPLGFGKDEKSLKDLKLKEVK 228

Query: 121 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 166
           NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPV+NN+LTSLKFH
Sbjct: 229 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVHNNILTSLKFH 274

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255567170|ref|XP_002524566.1| chlorophyll A/B binding protein, putative [Ricinus communis] gi|223536119|gb|EEF37774.1| chlorophyll A/B binding protein, putative [Ricinus communis]

 Score =  316 bits (810), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 154/166 (92%), Positives = 158/166 (95%)

Query: 1   MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
           MLGA GAIAPEILGKAGLIP ETAL WFQTGVIPPAGTY+YWADPYTLFV EMALMGFAE
Sbjct: 108 MLGAAGAIAPEILGKAGLIPPETALPWFQTGVIPPAGTYDYWADPYTLFVFEMALMGFAE 167

Query: 61  HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 120
           HRRFQDWA PGSMG+QYFLG EK+LGGSGDPAYPGGPLFNPLG GKDEKSMK+ KLKEVK
Sbjct: 168 HRRFQDWAKPGSMGKQYFLGLEKFLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEVK 227

Query: 121 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 166
           NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH
Sbjct: 228 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 273

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224131950|ref|XP_002321218.1| light-harvesting complex I protein Lhca3 [Populus trichocarpa] gi|118485656|gb|ABK94678.1| unknown [Populus trichocarpa] gi|222861991|gb|EEE99533.1| light-harvesting complex I protein Lhca3 [Populus trichocarpa]

 Score =  314 bits (805), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 152/166 (91%), Positives = 159/166 (95%)

Query: 1   MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
           MLGAVGAIAPEILGKAGLIP ETAL WF+TGVIPPAGTY+YWADPYTLFV EMALMGFAE
Sbjct: 109 MLGAVGAIAPEILGKAGLIPPETALPWFRTGVIPPAGTYSYWADPYTLFVFEMALMGFAE 168

Query: 61  HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 120
           HRR QDWA PGSMG+QYFLGFEKYLGGSG+PAYPGGPLFNPLG GKDEKS+KD KLKEVK
Sbjct: 169 HRRLQDWAKPGSMGKQYFLGFEKYLGGSGEPAYPGGPLFNPLGFGKDEKSLKDLKLKEVK 228

Query: 121 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 166
           NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPV+NN+LTSLKFH
Sbjct: 229 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVHNNILTSLKFH 274

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116519121|gb|ABJ99590.1| type III chlorophyll a/b-binding protein [Lycoris aurea]

 Score =  313 bits (802), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 150/166 (90%), Positives = 158/166 (95%)

Query: 1   MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
           MLG  GAIAPEILGK GLIP ETAL WFQTGVIPPAGTY+YWADPYTLFVLEMALMGFAE
Sbjct: 110 MLGVAGAIAPEILGKLGLIPPETALPWFQTGVIPPAGTYSYWADPYTLFVLEMALMGFAE 169

Query: 61  HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 120
           HRRFQDWA PGSMG+QYFLGFEK+LGGSGDPAYPGGP+FNPLG GKDEKSMK+ KLKEVK
Sbjct: 170 HRRFQDWAKPGSMGKQYFLGFEKFLGGSGDPAYPGGPIFNPLGFGKDEKSMKELKLKEVK 229

Query: 121 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 166
           NGRLAMLAILG+F+QGLVTGVGP+QNLLDHLADPVNNNVLTSLKFH
Sbjct: 230 NGRLAMLAILGFFIQGLVTGVGPFQNLLDHLADPVNNNVLTSLKFH 275

Source: Lycoris aurea

Species: Lycoris aurea

Genus: Lycoris

Family: Amaryllidaceae

Order: Asparagales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116519125|gb|ABJ99591.1| type III chlorophyll a/b-binding protein [Lycoris aurea]

 Score =  312 bits (800), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 149/166 (89%), Positives = 158/166 (95%)

Query: 1   MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
           MLG  GAIAPEILGK GLIP ETAL WFQTGVIPPAGTY+YWADPYTLFVLEMALMGFAE
Sbjct: 110 MLGVAGAIAPEILGKLGLIPPETALPWFQTGVIPPAGTYSYWADPYTLFVLEMALMGFAE 169

Query: 61  HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 120
           HRRFQDWA PGSMG+QYFLGFEK+LGGSGDPAYPGGP+FNPLG GKDE+SMK+ KLKEVK
Sbjct: 170 HRRFQDWAKPGSMGKQYFLGFEKFLGGSGDPAYPGGPIFNPLGFGKDERSMKELKLKEVK 229

Query: 121 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 166
           NGRLAMLAILG+F+QGLVTGVGP+QNLLDHLADPVNNNVLTSLKFH
Sbjct: 230 NGRLAMLAILGFFIQGLVTGVGPFQNLLDHLADPVNNNVLTSLKFH 275

Source: Lycoris aurea

Species: Lycoris aurea

Genus: Lycoris

Family: Amaryllidaceae

Order: Asparagales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|75220641|sp|Q32904.1|CB23_PEA RecName: Full=Chlorophyll a-b binding protein 3, chloroplastic; AltName: Full=LHCII type III CAB-3; Flags: Precursor gi|309673|gb|AAA84545.1| light harvesting protein [Pisum sativum]

 Score =  311 bits (796), Expect = 8e-83,   Method: Compositional matrix adjust.
 Identities = 150/166 (90%), Positives = 156/166 (93%)

Query: 1   MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
           MLGAVGAIAPE LGK GLIPQETALAWFQTGVIPPAGTYNYWAD YTLFVLEMALMGFAE
Sbjct: 110 MLGAVGAIAPEYLGKVGLIPQETALAWFQTGVIPPAGTYNYWADNYTLFVLEMALMGFAE 169

Query: 61  HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 120
           HRRFQDWA PGSMG+QYFLG EK  GGSG+PAYPGGP FNPLG GKDEKS+K+ KLKEVK
Sbjct: 170 HRRFQDWAKPGSMGKQYFLGLEKGFGGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVK 229

Query: 121 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 166
           NGRLAMLAILGYF+QGLVTGVGPYQNLLDH+ADPVNNNVLTSLKFH
Sbjct: 230 NGRLAMLAILGYFIQGLVTGVGPYQNLLDHVADPVNNNVLTSLKFH 275

Source: Pisum sativum

Species: Pisum sativum

Genus: Pisum

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225436257|ref|XP_002273201.1| PREDICTED: chlorophyll a-b binding protein 8, chloroplastic [Vitis vinifera]

 Score =  310 bits (793), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 150/166 (90%), Positives = 155/166 (93%)

Query: 1   MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
           MLGAVGAIAPEILGK GLIP ETAL WF+TGV PPAGTYNYWADPYTLFV EMALMGFAE
Sbjct: 108 MLGAVGAIAPEILGKLGLIPPETALPWFKTGVFPPAGTYNYWADPYTLFVFEMALMGFAE 167

Query: 61  HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 120
           HRRFQDWANPGSMG+QYFLG EKYLGGSGDPAYPGGPLFNPLG GKDEKS+KD KLKEVK
Sbjct: 168 HRRFQDWANPGSMGKQYFLGLEKYLGGSGDPAYPGGPLFNPLGFGKDEKSLKDLKLKEVK 227

Query: 121 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 166
           NGRLAMLAILGYF QG VTGVGP QNLLDHLADPVNNN++TSLKFH
Sbjct: 228 NGRLAMLAILGYFAQGPVTGVGPLQNLLDHLADPVNNNIITSLKFH 273

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449442612|ref|XP_004139075.1| PREDICTED: chlorophyll a-b binding protein 8, chloroplastic-like [Cucumis sativus] gi|449532766|ref|XP_004173351.1| PREDICTED: chlorophyll a-b binding protein 8, chloroplastic-like [Cucumis sativus]

 Score =  309 bits (792), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 148/166 (89%), Positives = 155/166 (93%)

Query: 1   MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
           MLGA GAIAPEI G  GLIP ETAL WF+TGVIPPAGTYNYWADPYTLFV EMALMGFAE
Sbjct: 108 MLGAAGAIAPEIFGSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVFEMALMGFAE 167

Query: 61  HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 120
           HRRFQDWA PGSMG+QYFLG EK+LGGSGDPAYPGGPLFNPLG GKDEKSMK+ KLKE+K
Sbjct: 168 HRRFQDWAKPGSMGKQYFLGLEKFLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIK 227

Query: 121 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 166
           NGRLAMLAILGYF+QGLVTGVGPYQNLLDHL+DPVNNNVLTSLKFH
Sbjct: 228 NGRLAMLAILGYFIQGLVTGVGPYQNLLDHLSDPVNNNVLTSLKFH 273

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	166
TAIR|locus:2200868	273	LHCA3 "photosystem I light har	1.0	0.608	0.831	4.8e-71
TAIR|locus:2825741	256	Lhca5 "photosystem I light har	0.927	0.601	0.363	4.2e-24
TAIR|locus:2079117	251	LHCA4 "light-harvesting chloro	0.867	0.573	0.387	1.7e-20
TAIR|locus:2202150	270	Lhca6 "photosystem I light har	0.313	0.192	0.5	1e-19
TAIR|locus:2082767	257	LHCA2 "photosystem I light har	0.861	0.556	0.380	1.2e-19
TAIR|locus:2040934	265	LHB1B2 "photosystem II light h	0.843	0.528	0.383	5.1e-19
TAIR|locus:2040944	266	LHB1B1 "light-harvesting chlor	0.843	0.526	0.383	5.1e-19
TAIR|locus:2019287	267	CAB3 "chlorophyll A/B binding	0.843	0.524	0.383	6.5e-19
TAIR|locus:2019372	267	CAB2 "chlorophyll A/B-binding	0.843	0.524	0.383	6.5e-19
TAIR|locus:2019322	267	CAB1 "chlorophyll A/B binding	0.843	0.524	0.383	6.5e-19

TAIR|locus:2200868 LHCA3 "photosystem I light harvesting complex gene 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 719 (258.2 bits), Expect = 4.8e-71, P = 4.8e-71
 Identities = 138/166 (83%), Positives = 143/166 (86%)

Query:     1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
             MLGA GAIAPEILGKAGLIP ETAL WFQTGVIPPAGTY YWAD YTLFVLEMALMGFAE
Sbjct:   108 MLGAAGAIAPEILGKAGLIPAETALPWFQTGVIPPAGTYTYWADNYTLFVLEMALMGFAE 167

Query:    61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVK 120
             HRR QDW NPGSMG+QYFLG EK L GSG+PAY            KDEKS+K+ KLKEVK
Sbjct:   168 HRRLQDWYNPGSMGKQYFLGLEKGLAGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVK 227

Query:   121 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 166
             NGRLAMLAILGYF+QGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH
Sbjct:   228 NGRLAMLAILGYFIQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 273

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009765 "photosynthesis, light harvesting" evidence=IEA

GO:0015979 "photosynthesis" evidence=ISS

GO:0016020 "membrane" evidence=IEA;IDA

GO:0016168 "chlorophyll binding" evidence=ISS

GO:0030076 "light-harvesting complex" evidence=ISS

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0010287 "plastoglobule" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

TAIR|locus:2825741 Lhca5 "photosystem I light harvesting complex gene 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 276 (102.2 bits), Expect = 4.2e-24, P = 4.2e-24
 Identities = 60/165 (36%), Positives = 95/165 (57%)

Query:     1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
             MLG  G +  ++L   G+        W++ G +     +++ A   TL V++  LMGFAE
Sbjct:    96 MLGVAGILFTDLLRTTGI---RNLPVWYEAGAVK----FDF-ASTKTLIVVQFLLMGFAE 147

Query:    61 HRRFQDWANPGSMGRQ--YFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKE 118
              +R+ D+ +PGS  ++  +F G E  L G  +P Y            KD ++  D+KLKE
Sbjct:   148 TKRYMDFVSPGSQAKEGSFFFGLEAALEGL-EPGYPGGPLLNPLGLAKDVQNAHDWKLKE 206

Query:   119 VKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 163
             +KNGRLAM+A+LG+FVQ  VT  GP  NL++HL++P +  ++ +L
Sbjct:   207 IKNGRLAMMAMLGFFVQASVTHTGPIDNLVEHLSNPWHKTIIQTL 251

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009765 "photosynthesis, light harvesting" evidence=IEA

GO:0015979 "photosynthesis" evidence=ISS

GO:0016020 "membrane" evidence=IEA;IDA

GO:0030076 "light-harvesting complex" evidence=ISS

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009782 "photosystem I antenna complex" evidence=IDA

GO:0031409 "pigment binding" evidence=IDA

GO:0009768 "photosynthesis, light harvesting in photosystem I" evidence=IGI

GO:0006364 "rRNA processing" evidence=RCA

GO:0009657 "plastid organization" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

TAIR|locus:2079117 LHCA4 "light-harvesting chlorophyll-protein complex I subunit A4" [Arabidopsis thaliana (taxid:3702)]

 Score = 242 (90.2 bits), Expect = 1.7e-20, P = 1.7e-20
 Identities = 62/160 (38%), Positives = 83/160 (51%)

Query:     1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
             MLG  G + PE+  K G+I       W+       AG   Y+A   TLFV+E  L  + E
Sbjct:   104 MLGVAGMLLPEVFTKIGII---NVPEWYD------AGKEQYFASSSTLFVIEFILFHYVE 154

Query:    61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVK 120
              RR+QD  NPGS+ +     F++Y    G+  Y              E      K KE+ 
Sbjct:   155 IRRWQDIKNPGSVNQDPI--FKQYSLPKGEVGYPGGIFNPLNFAPTQEA-----KEKELA 207

Query:   121 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVL 160
             NGRLAMLA LG+ VQ  VTG GP++NLL HL+DP +N ++
Sbjct:   208 NGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSDPWHNTIV 247

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009765 "photosynthesis, light harvesting" evidence=IEA

GO:0015979 "photosynthesis" evidence=ISS

GO:0016020 "membrane" evidence=IEA;IDA

GO:0016168 "chlorophyll binding" evidence=ISS;NAS

GO:0030076 "light-harvesting complex" evidence=ISS

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0010287 "plastoglobule" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0080167 "response to karrikin" evidence=IEP

GO:0019344 "cysteine biosynthetic process" evidence=RCA

GO:0030003 "cellular cation homeostasis" evidence=RCA

GO:0070838 "divalent metal ion transport" evidence=RCA

TAIR|locus:2202150 Lhca6 "photosystem I light harvesting complex gene 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 131 (51.2 bits), Expect = 1.0e-19, Sum P(2) = 1.0e-19
 Identities = 26/52 (50%), Positives = 34/52 (65%)

Query:   115 KLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 166
             + KE+KNGRLAMLA LG+  Q   T   P +NL+ HLADP + NV ++   H
Sbjct:   219 RTKEIKNGRLAMLAFLGFCFQATYTSQDPIENLMAHLADPGHCNVFSAFTSH 270

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009765 "photosynthesis, light harvesting" evidence=IEA

GO:0015979 "photosynthesis" evidence=ISS

GO:0016020 "membrane" evidence=IEA

GO:0016168 "chlorophyll binding" evidence=ISS

GO:0030076 "light-harvesting complex" evidence=ISS

GO:0009637 "response to blue light" evidence=IEP;RCA

GO:0010114 "response to red light" evidence=IEP;RCA

GO:0010218 "response to far red light" evidence=IEP;RCA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0010155 "regulation of proton transport" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

GO:0030003 "cellular cation homeostasis" evidence=RCA

GO:0070838 "divalent metal ion transport" evidence=RCA

TAIR|locus:2082767 LHCA2 "photosystem I light harvesting complex gene 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 234 (87.4 bits), Expect = 1.2e-19, P = 1.2e-19
 Identities = 59/155 (38%), Positives = 79/155 (50%)

Query:     1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
             MLGA G   PE L K G++      +W+       AG   Y+ D  TLFV+E+ L+G+AE
Sbjct:   102 MLGAAGIFIPEFLTKIGIL---NTPSWYT------AGEQEYFTDKTTLFVVELILIGWAE 152

Query:    61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKS-MKDFKLKEV 119
              RR+ D   PGS+         K  G   D  Y                + +K+ + KE+
Sbjct:   153 GRRWADIIKPGSVNTDPVFPNNKLTGT--DVGYPGGLWFDPLGWGSGSPAKLKELRTKEI 210

Query:   120 KNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADP 154
             KNGRLAMLA++G + Q + TG GP  NL  HLADP
Sbjct:   211 KNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 245

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009765 "photosynthesis, light harvesting" evidence=IEA

GO:0009768 "photosynthesis, light harvesting in photosystem I" evidence=TAS

GO:0009782 "photosystem I antenna complex" evidence=TAS

GO:0015979 "photosynthesis" evidence=ISS

GO:0016020 "membrane" evidence=IEA;IDA

GO:0016168 "chlorophyll binding" evidence=ISS

GO:0030076 "light-harvesting complex" evidence=ISS

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

TAIR|locus:2040934 LHB1B2 "photosystem II light harvesting complex gene B1B2" [Arabidopsis thaliana (taxid:3702)]

 Score = 228 (85.3 bits), Expect = 5.1e-19, P = 5.1e-19
 Identities = 64/167 (38%), Positives = 87/167 (52%)

Query:     1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
             MLGA+G + PE+L + G+   E    WF+ G  I   G  +Y  +P          ++  
Sbjct:   105 MLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWAT 162

Query:    52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSM 111
             ++ LMG  E  R    A  G +G    L    Y GGS DP               D ++ 
Sbjct:   163 QVILMGAVEGYRV---AGDGPLGEAEDL---LYPGGSFDPL----------GLATDPEAF 206

Query:   112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 158
              + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct:   207 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009765 "photosynthesis, light harvesting" evidence=IEA

GO:0009769 "photosynthesis, light harvesting in photosystem II" evidence=TAS

GO:0016020 "membrane" evidence=IEA;IDA

GO:0016168 "chlorophyll binding" evidence=ISS;TAS

GO:0030076 "light-harvesting complex" evidence=ISS

GO:0042651 "thylakoid membrane" evidence=TAS

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0015979 "photosynthesis" evidence=ISS

GO:0010287 "plastoglobule" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

TAIR|locus:2040944 LHB1B1 "light-harvesting chlorophyll-protein complex II subunit B1" [Arabidopsis thaliana (taxid:3702)]

 Score = 228 (85.3 bits), Expect = 5.1e-19, P = 5.1e-19
 Identities = 64/167 (38%), Positives = 87/167 (52%)

Query:     1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
             MLGA+G + PE+L + G+   E    WF+ G  I   G  +Y  +P          ++  
Sbjct:   106 MLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWAT 163

Query:    52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSM 111
             ++ LMG  E  R    A  G +G    L    Y GGS DP               D ++ 
Sbjct:   164 QVILMGAVEGYRV---AGDGPLGEAEDL---LYPGGSFDPL----------GLATDPEAF 207

Query:   112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 158
              + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct:   208 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 254

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009765 "photosynthesis, light harvesting" evidence=IEA

GO:0009769 "photosynthesis, light harvesting in photosystem II" evidence=TAS

GO:0016020 "membrane" evidence=IEA;IDA

GO:0016168 "chlorophyll binding" evidence=ISS;TAS

GO:0030076 "light-harvesting complex" evidence=ISS

GO:0042651 "thylakoid membrane" evidence=TAS

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0015979 "photosynthesis" evidence=ISS

GO:0010287 "plastoglobule" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

TAIR|locus:2019287 CAB3 "chlorophyll A/B binding protein 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 227 (85.0 bits), Expect = 6.5e-19, P = 6.5e-19
 Identities = 64/167 (38%), Positives = 87/167 (52%)

Query:     1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
             MLGA+G + PE+L + G+   E    WF+ G  I   G  +Y  +P          ++  
Sbjct:   107 MLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWAT 164

Query:    52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSM 111
             ++ LMG  E  R    A  G +G    L    Y GGS DP               D ++ 
Sbjct:   165 QVILMGAVEGYRV---AGNGPLGEAEDL---LYPGGSFDPL----------GLATDPEAF 208

Query:   112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 158
              + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct:   209 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNN 255

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009765 "photosynthesis, light harvesting" evidence=IEA

GO:0015979 "photosynthesis" evidence=ISS

GO:0016020 "membrane" evidence=IEA

GO:0016168 "chlorophyll binding" evidence=ISS;TAS

GO:0030076 "light-harvesting complex" evidence=ISS

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0010287 "plastoglobule" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

TAIR|locus:2019372 CAB2 "chlorophyll A/B-binding protein 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 227 (85.0 bits), Expect = 6.5e-19, P = 6.5e-19
 Identities = 64/167 (38%), Positives = 87/167 (52%)

Query:     1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
             MLGA+G + PE+L + G+   E    WF+ G  I   G  +Y  +P          ++  
Sbjct:   107 MLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWAT 164

Query:    52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSM 111
             ++ LMG  E  R    A  G +G    L    Y GGS DP               D ++ 
Sbjct:   165 QVILMGAVEGYRV---AGNGPLGEAEDL---LYPGGSFDPL----------GLATDPEAF 208

Query:   112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 158
              + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct:   209 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNN 255

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009765 "photosynthesis, light harvesting" evidence=IEA

GO:0015979 "photosynthesis" evidence=ISS

GO:0016020 "membrane" evidence=IEA

GO:0016168 "chlorophyll binding" evidence=ISS;TAS

GO:0030076 "light-harvesting complex" evidence=ISS

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009637 "response to blue light" evidence=IEP

GO:0010114 "response to red light" evidence=IEP

GO:0010218 "response to far red light" evidence=IEP

GO:0009750 "response to fructose stimulus" evidence=IEP

GO:0005794 "Golgi apparatus" evidence=RCA

TAIR|locus:2019322 CAB1 "chlorophyll A/B binding protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 227 (85.0 bits), Expect = 6.5e-19, P = 6.5e-19
 Identities = 64/167 (38%), Positives = 87/167 (52%)

Query:     1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
             MLGA+G + PE+L + G+   E    WF+ G  I   G  +Y  +P          ++  
Sbjct:   107 MLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWAT 164

Query:    52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSM 111
             ++ LMG  E  R    A  G +G    L    Y GGS DP               D ++ 
Sbjct:   165 QVILMGAVEGYRV---AGNGPLGEAEDL---LYPGGSFDPL----------GLATDPEAF 208

Query:   112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 158
              + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct:   209 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNN 255

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009765 "photosynthesis, light harvesting" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016168 "chlorophyll binding" evidence=ISS;TAS

GO:0030076 "light-harvesting complex" evidence=ISS

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0015979 "photosynthesis" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q32904	CB23_PEA	No assigned EC number	0.9036	1.0	0.6036	N/A	no
P27522	CB13_SOLLC	No assigned EC number	0.9277	1.0	0.6080	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	166
PLN00048	262	PLN00048, PLN00048, photosystem I light harvesting	1e-111
PLN00147	252	PLN00147, PLN00147, light-harvesting complex I chl	1e-45
PLN00097	244	PLN00097, PLN00097, photosystem I light harvesting	4e-37
pfam00504	135	pfam00504, Chloroa_b-bind, Chlorophyll A-B binding	3e-34
PLN00098	267	PLN00098, PLN00098, light-harvesting complex I chl	3e-33
PLN00025	262	PLN00025, PLN00025, photosystem II light harvestin	4e-33
PLN00101	250	PLN00101, PLN00101, Photosystem I light-harvesting	1e-32
PLN00171	324	PLN00171, PLN00171, photosystem light-harvesting c	3e-31
PLN00099	243	PLN00099, PLN00099, light-harvesting complex IChlo	7e-19
PLN00187	286	PLN00187, PLN00187, photosystem II light-harvestin	2e-18
PLN00100	246	PLN00100, PLN00100, light-harvesting complex chlor	1e-17
PLN00170	255	PLN00170, PLN00170, photosystem II light-harvestin	6e-11
PLN00089	209	PLN00089, PLN00089, fucoxanthin-chlorophyll a/c bi	7e-06
PLN00170	255	PLN00170, PLN00170, photosystem II light-harvestin	4e-05
PLN00101	250	PLN00101, PLN00101, Photosystem I light-harvesting	8e-05
pfam00504	135	pfam00504, Chloroa_b-bind, Chlorophyll A-B binding	3e-04
PLN00120	202	PLN00120, PLN00120, fucoxanthin-chlorophyll a-c bi	3e-04
PLN00098	267	PLN00098, PLN00098, light-harvesting complex I chl	5e-04
PLN00147	252	PLN00147, PLN00147, light-harvesting complex I chl	0.003

>gnl|CDD|177680 PLN00048, PLN00048, photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional

 Score =  317 bits (813), Expect = e-111
 Identities = 146/166 (87%), Positives = 155/166 (93%)

Query: 1   MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
           MLGA GAIAPEILGKAGLIPQETAL WFQ+GVIPPAGTY+YWADPYTLFVLEMALMGFAE
Sbjct: 97  MLGAAGAIAPEILGKAGLIPQETALPWFQSGVIPPAGTYDYWADPYTLFVLEMALMGFAE 156

Query: 61  HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 120
           HRR QD+  PGSMG+QYFLG EK LGGSG+PAYPGGP FNPLG GKDEKSMK+ KLKEVK
Sbjct: 157 HRRAQDYYKPGSMGKQYFLGLEKGLGGSGNPAYPGGPFFNPLGFGKDEKSMKELKLKEVK 216

Query: 121 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 166
           NGRLAMLAILGYF+Q LVTGVGP+QNLLDHLADPVNNNVLT+LKFH
Sbjct: 217 NGRLAMLAILGYFIQALVTGVGPFQNLLDHLADPVNNNVLTNLKFH 262

Length = 262

>gnl|CDD|215076 PLN00147, PLN00147, light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional

 Score =  149 bits (378), Expect = 1e-45
 Identities = 75/166 (45%), Positives = 106/166 (63%), Gaps = 14/166 (8%)

Query: 1   MLGAVGAIAPEILGKAGL--IPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGF 58
           M G  G +  ++L   G+  +P      W++ G    A  + + A   TLFV+++ LMGF
Sbjct: 95  MAGVAGILFTDLLRVTGIRNLP-----VWYEAG----AVKFEF-ASTRTLFVVQLLLMGF 144

Query: 59  AEHRRFQDWANPGSMGRQ-YFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLK 117
           AE +R+ D+ +PGS  ++  F G E  L G  +P YPGGPLFNPLGL KD ++  D+KLK
Sbjct: 145 AETKRYMDFVSPGSQAKEGSFFGLEAALEGL-EPGYPGGPLFNPLGLAKDIENAHDWKLK 203

Query: 118 EVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 163
           E+KNGRLAM+A+LG+FVQ  VT  GP  NLL HL+DP +  ++ +L
Sbjct: 204 EIKNGRLAMVAMLGFFVQASVTHTGPIDNLLTHLSDPWHKTIIQTL 249

Length = 252

>gnl|CDD|165670 PLN00097, PLN00097, photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional

 Score =  127 bits (320), Expect = 4e-37
 Identities = 70/163 (42%), Positives = 88/163 (53%), Gaps = 16/163 (9%)

Query: 1   MLGAVGAIAPEILGKAGL--IPQETALAWFQTGVIPPAGTYN-YWADPYTLFVLEMALMG 57
           MLG  G +APE+L K G+  +P      W        A  ++ YWA    LF ++MA+  
Sbjct: 94  MLGLAGCVAPELLTKIGMADLPN-----WID------AAKWDGYWAGAGPLFFIQMAMFN 142

Query: 58  FAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLK 117
           +AE RR+QD   PGSM      G  K    + D  YP G LF+  G  KDEK   + KLK
Sbjct: 143 WAEIRRWQDMKAPGSMNEDPLFGANKG-DTNTDVGYPKG-LFDKFGWAKDEKKAAELKLK 200

Query: 118 EVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVL 160
           E+ NGRLAMLA LG   Q + TG GP  NL  HLADP +N + 
Sbjct: 201 EIANGRLAMLAFLGCCAQAIQTGTGPVDNLFSHLADPGHNGIF 243

Length = 244

>gnl|CDD|215956 pfam00504, Chloroa_b-bind, Chlorophyll A-B binding protein

 Score =  117 bits (294), Expect = 3e-34
 Identities = 58/137 (42%), Positives = 73/137 (53%), Gaps = 22/137 (16%)

Query: 1   MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
           ML  +GA+ PE+L K G +      AWF+      AG     A P  L +  + LMGF E
Sbjct: 21  MLAVLGALVPELLTKLGGV--AGEPAWFE------AGGPLLPAIPTLLALQILLLMGFLE 72

Query: 61  HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 120
             R+Q    P               G  GDP YPGG  F+PLGL KD ++  + KLKE+K
Sbjct: 73  LARWQGGKAP--------------GGEGGDPGYPGGFGFDPLGLAKDPETFAELKLKEIK 118

Query: 121 NGRLAMLAILGYFVQGL 137
           NGRLAM+A LG+FVQ L
Sbjct: 119 NGRLAMIAFLGFFVQEL 135

Length = 135

>gnl|CDD|177716 PLN00098, PLN00098, light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional

 Score =  118 bits (296), Expect = 3e-33
 Identities = 68/168 (40%), Positives = 91/168 (54%), Gaps = 14/168 (8%)

Query: 1   MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
           ML   G + PE L + G I      +W+       AG   Y+ADP TLFV++M LMG+AE
Sbjct: 112 MLAVAGILIPECLERLGFIEN---FSWYD------AGAREYFADPTTLFVVQMVLMGWAE 162

Query: 61  HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPL--GLGKDEKSMKDFKLKE 118
            RR+ D   PG +  +             D  YPGG  F+P+  G G  E  M   + KE
Sbjct: 163 GRRWADLIKPGCVDIE--PKLPNKTNPKPDVGYPGGLWFDPMMWGRGSPEPVMV-LRTKE 219

Query: 119 VKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 166
           +KNGRLAMLA +G+  Q + TG GP +NL+ HLADP + NV ++   H
Sbjct: 220 IKNGRLAMLAFVGFCFQAVYTGEGPIENLMAHLADPGHCNVFSAFTSH 267

Length = 267

>gnl|CDD|215033 PLN00025, PLN00025, photosystem II light harvesting chlorophyll a/b binding protein; Provisional

 Score =  117 bits (296), Expect = 4e-33
 Identities = 69/167 (41%), Positives = 90/167 (53%), Gaps = 28/167 (16%)

Query: 1   MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
           MLGA+G + PE+L K G+   E    WF+ G  I   G  +Y  +P          ++  
Sbjct: 103 MLGALGCVTPELLAKNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWAC 160

Query: 52  EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
           ++ LMG  E  R     N G             LG   DP YPGG  F+PLGL  D  + 
Sbjct: 161 QVVLMGAVEGYR----VNGGP------------LGEGLDPLYPGGS-FDPLGLADDPDTF 203

Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 158
            + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPV NN
Sbjct: 204 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVANN 250

Length = 262

>gnl|CDD|215055 PLN00101, PLN00101, Photosystem I light-harvesting complex type 4 protein; Provisional

 Score =  116 bits (291), Expect = 1e-32
 Identities = 70/164 (42%), Positives = 95/164 (57%), Gaps = 16/164 (9%)

Query: 1   MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
           MLG  G + PE+  K G+I    A  W+       AG   Y+A   TLFV+E  L  + E
Sbjct: 103 MLGVAGMLLPEVFTKIGII---NAPQWYD------AGKAEYFASSSTLFVIEFILFHYVE 153

Query: 61  HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 120
            RR+QD  NPGS+ +     F++Y     +  YPGG +FNPL     E++    K KE+ 
Sbjct: 154 IRRWQDIKNPGSVNQDPI--FKQYSLPPNEVGYPGG-IFNPLNFAPTEEA----KEKELA 206

Query: 121 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 164
           NGRLAMLA LG+ VQ  VTG GP++NLL HL+DP +N ++ +L 
Sbjct: 207 NGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSDPWHNTIVQTLS 250

Length = 250

>gnl|CDD|215088 PLN00171, PLN00171, photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional

 Score =  114 bits (286), Expect = 3e-31
 Identities = 71/176 (40%), Positives = 98/176 (55%), Gaps = 22/176 (12%)

Query: 1   MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAG-TYNYWADPYTLF-----VLEMA 54
           ML A+G + PE+L   G +       W++ G     G T +Y   P         V+ +A
Sbjct: 160 MLAALGVVIPEVLDLFGAV-HFAEPVWWRVGYAKLQGDTLDYLGIPGLHIAGSQGVIVIA 218

Query: 55  -----LMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEK 109
                LM   E+ R+         G +       YL   GD  YPGG LF+PLGL KD  
Sbjct: 219 ICQALLMVGPEYARY--------CGIEALEPLGIYL--PGDINYPGGALFDPLGLSKDPV 268

Query: 110 SMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKF 165
           + +D K+KE+KNGRLAM+A LG+++Q  VTG GP QNL+DHL+DP++NN+L+SLK 
Sbjct: 269 AFEDLKVKEIKNGRLAMVAWLGFYIQAAVTGKGPVQNLVDHLSDPLHNNLLSSLKL 324

Length = 324

>gnl|CDD|177717 PLN00099, PLN00099, light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional

 Score = 80.1 bits (197), Expect = 7e-19
 Identities = 59/167 (35%), Positives = 79/167 (47%), Gaps = 36/167 (21%)

Query: 1   MLGAVGAIAPEILGKAGLI-PQETALAWFQTGVIPPAGTYNYWADPY------TLFVLEM 53
           ML   G + PE LG    +  QE A          P G   Y  +P       T+  +E 
Sbjct: 94  MLAVPGILVPEALGLGNWVKAQEWAAI--------PGGQATYLGNPVPWGTLPTILAIEF 145

Query: 54  ALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKD 113
             + F EH+R        SM +                 YPGG  F+PLG  KD K  ++
Sbjct: 146 LAIAFVEHQR--------SMEKD-----------PEKKKYPGGA-FDPLGYSKDPKKFEE 185

Query: 114 FKLKEVKNGRLAMLAILGYFV-QGLVTGVGPYQNLLDHLADPVNNNV 159
           +K+KE+KNGRLA+LA +G+ V Q    G GP +NL  HLADP +NN+
Sbjct: 186 YKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 232

Length = 243

>gnl|CDD|177781 PLN00187, PLN00187, photosystem II light-harvesting complex II protein Lhcb4; Provisional

 Score = 79.4 bits (196), Expect = 2e-18
 Identities = 54/168 (32%), Positives = 79/168 (47%), Gaps = 33/168 (19%)

Query: 1   MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPY-----TLFVLEMAL 55
           ML  +GA++ E L         T + W   G +      +Y   P      TL  +E+ +
Sbjct: 145 MLATLGALSVEAL---------TGVTWQDAGKVELVDGSSYLGQPLPFSITTLIWIEVLV 195

Query: 56  MGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFK 115
           +G+ E   FQ         R   L  EK L       YPGG  F+PLGL  D +  +  +
Sbjct: 196 IGYIE---FQ---------RNAELDPEKRL-------YPGGKFFDPLGLAADPEKKETLQ 236

Query: 116 LKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 163
           L E+K+ RLAM+A LG+ VQ   TG GP  N   HL+DP++  ++ + 
Sbjct: 237 LAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTF 284

Length = 286

>gnl|CDD|215054 PLN00100, PLN00100, light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional

 Score = 76.8 bits (189), Expect = 1e-17
 Identities = 45/127 (35%), Positives = 62/127 (48%), Gaps = 23/127 (18%)

Query: 36  AGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPG 95
           AG   Y  D  TL ++++ +M   E  R++ +   G  G    L F           +P 
Sbjct: 105 AGAEKYGLDLQTLVLIQVVVMAVLEAARYRGFMKTGESG---VLSF-----------FP- 149

Query: 96  GPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPV 155
              F+P G+   E      K+KEVKNGRLAMLA LG   Q  VTG  P + L  H+A+P 
Sbjct: 150 ---FDPTGMDSPEM-----KVKEVKNGRLAMLAFLGMVSQYAVTGKSPLEGLKAHMANPG 201

Query: 156 NNNVLTS 162
           + N+ TS
Sbjct: 202 HVNIFTS 208

Length = 246

>gnl|CDD|215087 PLN00170, PLN00170, photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional

 Score = 58.8 bits (142), Expect = 6e-11
 Identities = 38/129 (29%), Positives = 65/129 (50%), Gaps = 22/129 (17%)

Query: 23  TALAWFQTGVIPPAGTYNYWADPY---TLFVLEMALMGFAEHRRFQDWANPGSMGRQYFL 79
           + + WF+ G  P A        P+   +L   ++ LMG+ E +R+ D+ NP S   ++  
Sbjct: 120 SGIPWFEAGADPGA------IAPFSFGSLLGTQLLLMGWVESKRWVDFFNPDSQSVEWAT 173

Query: 80  GF----EKYLGGSGDPAYPGGPLFNPLGLG---------KDEKSMKDFKLKEVKNGRLAM 126
            +    E +   +G   YPGG  F+PLGL           D + ++  KL E+K+ RLAM
Sbjct: 174 PWSRTAENFANATGLQGYPGGKFFDPLGLAGTVKDGVYIPDFEKLERLKLAEIKHARLAM 233

Query: 127 LAILGYFVQ 135
           +A+L ++ +
Sbjct: 234 VAMLIFYFE 242

Length = 255

>gnl|CDD|177710 PLN00089, PLN00089, fucoxanthin-chlorophyll a/c binding protein; Provisional

 Score = 43.9 bits (103), Expect = 7e-06
 Identities = 26/53 (49%), Positives = 31/53 (58%), Gaps = 2/53 (3%)

Query: 94  PGGPLFNPLGLG-KDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVG-PY 144
           PG   F+ L L  KD   M+  K KE+KNGRLAM+AI G      +TG G PY
Sbjct: 156 PGDFGFDLLALYPKDAAKMEKKKDKELKNGRLAMVAIGGIATGSAITGHGFPY 208

Length = 209

>gnl|CDD|215087 PLN00170, PLN00170, photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional

 Score = 41.8 bits (98), Expect = 4e-05
 Identities = 22/52 (42%), Positives = 33/52 (63%)

Query: 90  DPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGV 141
           D + PG   F+PLGLGKD   +K ++  E+ +GR AM A++G FV    +G+
Sbjct: 71  DGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI 122

Length = 255

>gnl|CDD|215055 PLN00101, PLN00101, Photosystem I light-harvesting complex type 4 protein; Provisional

 Score = 41.1 bits (96), Expect = 8e-05
 Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 5/65 (7%)

Query: 83  KYLGGSGDPAY-----PGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGL 137
           ++L G   P Y     PG   F+PLGL +D +++K F   E+ NGR AML + G  +  +
Sbjct: 55  EWLPGLASPGYLNGSLPGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEV 114

Query: 138 VTGVG 142
            T +G
Sbjct: 115 FTKIG 119

Length = 250

>gnl|CDD|215956 pfam00504, Chloroa_b-bind, Chlorophyll A-B binding protein

 Score = 38.4 bits (90), Expect = 3e-04
 Identities = 14/30 (46%), Positives = 19/30 (63%)

Query: 118 EVKNGRLAMLAILGYFVQGLVTGVGPYQNL 147
           E+K+GR AMLA+LG  V  L+T +G     
Sbjct: 13  ELKHGRWAMLAVLGALVPELLTKLGGVAGE 42

Length = 135

>gnl|CDD|215063 PLN00120, PLN00120, fucoxanthin-chlorophyll a-c binding protein; Provisional

 Score = 39.3 bits (92), Expect = 3e-04
 Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 7/58 (12%)

Query: 80  GFEKYLGGSGDPAYPGGPLFNPLGL--GKDEKSMKDFKLKEVKNGRLAMLAILGYFVQ 135
            FE  LG     A      F+PLGL    D++     +  E+K+GR++MLA++GY V 
Sbjct: 33  AFENELG-----AQAPLGFFDPLGLVDDGDQEKFDRLRYVEIKHGRISMLAVVGYLVT 85

Length = 202

>gnl|CDD|177716 PLN00098, PLN00098, light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional

 Score = 38.7 bits (90), Expect = 5e-04
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 7/72 (9%)

Query: 90  DPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNL-- 147
           D + PG   F+PLGLG D + +K F   E+ + R AMLA+ G  +   +  +G  +N   
Sbjct: 76  DGSLPGDFGFDPLGLGSDPELLKWFAQAELMHSRWAMLAVAGILIPECLERLGFIENFSW 135

Query: 148 -----LDHLADP 154
                 ++ ADP
Sbjct: 136 YDAGAREYFADP 147

Length = 267

>gnl|CDD|215076 PLN00147, PLN00147, light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional

 Score = 36.8 bits (85), Expect = 0.003
 Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 5/64 (7%)

Query: 84  YLGGSGDPAYPGGPL-----FNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLV 138
           +L G   P +  G L     F+PLGLG+D +S+K +   E+ + R AM  + G     L+
Sbjct: 48  WLPGLDPPPHLDGTLAGDFGFDPLGLGEDPESLKWYVQAELVHSRFAMAGVAGILFTDLL 107

Query: 139 TGVG 142
              G
Sbjct: 108 RVTG 111

Length = 252

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	166
PLN00048	262	photosystem I light harvesting chlorophyll a/b bin	100.0
PLN00101	250	Photosystem I light-harvesting complex type 4 prot	100.0
PLN00098	267	light-harvesting complex I chlorophyll a/b-binding	100.0
PLN00097	244	photosystem I light harvesting complex Lhca2/4, ch	100.0
PLN00147	252	light-harvesting complex I chlorophyll-a/b binding	100.0
PLN00025	262	photosystem II light harvesting chlorophyll a/b bi	100.0
PLN00187	286	photosystem II light-harvesting complex II protein	100.0
PLN00171	324	photosystem light-harvesting complex -chlorophyll	100.0
PLN00099	243	light-harvesting complex IChlorophyll A-B binding	100.0
PLN00100	246	light-harvesting complex chlorophyll-a/b protein o	100.0
PLN00170	255	photosystem II light-harvesting-Chl-binding protei	99.98
PLN00089	209	fucoxanthin-chlorophyll a/c binding protein; Provi	99.91
PF00504	156	Chloroa_b-bind: Chlorophyll A-B binding protein; I	99.87
PLN00120	202	fucoxanthin-chlorophyll a-c binding protein; Provi	99.85
PLN00098	267	light-harvesting complex I chlorophyll a/b-binding	99.68
PLN00170	255	photosystem II light-harvesting-Chl-binding protei	99.68
PLN00101	250	Photosystem I light-harvesting complex type 4 prot	99.66
PLN00147	252	light-harvesting complex I chlorophyll-a/b binding	99.61
PLN00171	324	photosystem light-harvesting complex -chlorophyll	99.6
PLN00097	244	photosystem I light harvesting complex Lhca2/4, ch	99.59
PLN00025	262	photosystem II light harvesting chlorophyll a/b bi	99.59
PLN00187	286	photosystem II light-harvesting complex II protein	99.57
PLN00100	246	light-harvesting complex chlorophyll-a/b protein o	99.55
PLN00099	243	light-harvesting complex IChlorophyll A-B binding	99.54
PLN00048	262	photosystem I light harvesting chlorophyll a/b bin	99.51
PF00504	156	Chloroa_b-bind: Chlorophyll A-B binding protein; I	99.47
PLN00089	209	fucoxanthin-chlorophyll a/c binding protein; Provi	99.46
PLN00120	202	fucoxanthin-chlorophyll a-c binding protein; Provi	99.24
PHA02337	35	putative high light inducible protein	98.13
PLN00084	214	photosystem II subunit S (PsbS); Provisional	97.89
PLN00014	250	light-harvesting-like protein 3; Provisional	97.7

>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional

Probab=100.00  E-value=2e-47  Score=321.21  Aligned_cols=166  Identities=88%  Similarity=1.460  Sum_probs=151.7

Q ss_pred             CccccchhhhhhhccCCCCCccccccccccCccCCCCccccCCChhHHHHHHHHHhhhhhhhhhccccCCCCCCcccccc
Q 031053            1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLG   80 (166)
Q Consensus         1 MLA~~G~lvpE~l~~~G~~~~~~~~~w~~ag~i~~~g~~~~~~~~~~l~~~q~ll~g~vE~~R~~~~~~pg~~~~~~~~~   80 (166)
                      |||++|+++||++++.|++.......||++++++..+..+|++.+.+++++|+++||++|.+|++++++||+++...+.+
T Consensus        97 MLa~~G~lv~Ell~~~g~~~~~~~~~w~~ag~~~~~~~~~y~~~p~~l~~~~~~lmg~~E~~R~~~~~~pG~~~~~~~~~  176 (262)
T PLN00048         97 MLGAAGAIAPEILGKAGLIPQETALPWFQSGVIPPAGTYDYWADPYTLFVLEMALMGFAEHRRAQDYYKPGSMGKQYFLG  176 (262)
T ss_pred             HHHHhhHHHHHHhccCCccccccccccccccccccccccccccchhHHHHHHHHHhhheeeeccccccCCCccccccccc
Confidence            99999999999999888876544567999999888787789999999999999999999999999999999998888877


Q ss_pred             cccccCCCCCCCCCCCCccccCCCCCChhhhhHHHHHHhhhhhHHHHHhhhhhhhhccccccchhhhHhhhcCCccccee
Q 031053           81 FEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVL  160 (166)
Q Consensus        81 ~~~~~~~~~~~~~PG~~~fdPlgl~~~~~~~~~~~~~El~nGRLAMla~~g~~~q~~~tg~gp~~nl~~~~~~p~~~n~~  160 (166)
                      +++.+.+..|..||||++|||+|+++|+|+++++|++|||||||||+|++||++|+++||+||++||.+||+||+|+||+
T Consensus       177 ~~~~~~~~~d~~yPG~~~fDPlGl~~~~e~~~~~k~~EiknGRLAM~A~~G~~~q~~~tg~gp~~~L~~hladP~~~ni~  256 (262)
T PLN00048        177 LEKGLGGSGNPAYPGGPFFNPLGFGKDEKSMKELKLKEVKNGRLAMLAILGYFIQALVTGVGPFQNLLDHLADPVNNNVL  256 (262)
T ss_pred             chhccccccccccccccccCccccccchHHHHHHHHHHHhhhHHHHHHhhhHhhhhhhcCCCHHHHHHHHhcCccccccc
Confidence            77666655577899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eccccC
Q 031053          161 TSLKFH  166 (166)
Q Consensus       161 ~~~~~~  166 (166)
                      +|+..|
T Consensus       257 ~~~~~~  262 (262)
T PLN00048        257 TNLKFH  262 (262)
T ss_pred             cccccC
Confidence            998753

>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional

Probab=100.00  E-value=1e-42  Score=290.76  Aligned_cols=148  Identities=45%  Similarity=0.797  Sum_probs=128.2

Q ss_pred             CccccchhhhhhhccCCCCCccccccccccCccCCCCccccCCChhHHHHHHHHHhhhhhhhhhccccCCCCCCcccccc
Q 031053            1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLG   80 (166)
Q Consensus         1 MLA~~G~lvpE~l~~~G~~~~~~~~~w~~ag~i~~~g~~~~~~~~~~l~~~q~ll~g~vE~~R~~~~~~pg~~~~~~~~~   80 (166)
                      |||++|+++||++++.|.+.   .+.|+++++      ..|++.+.+++++|+++||++|.+||+++++||+.+.++.+.
T Consensus       103 Mla~~G~l~~e~l~~~g~~~---~p~w~~ag~------~~~~~~~~~l~~ie~~~mg~~E~~R~~~~~~pG~~~~~~~~~  173 (250)
T PLN00101        103 MLGVAGMLLPEVFTKIGIIN---APQWYDAGK------AEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFK  173 (250)
T ss_pred             HHHHHHHHHHHHhcCCCCcC---CCccccccc------hhhcccchHHHHHHHHHHHHHHHHHhhcccCCCccccccccc
Confidence            99999999999999888764   357999774      347777789999999999999999999999999988776653


Q ss_pred             cccccCCCCCCCCCCCCccccCCCCCChhhhhHHHHHHhhhhhHHHHHhhhhhhhhccccccchhhhHhhhcCCccccee
Q 031053           81 FEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVL  160 (166)
Q Consensus        81 ~~~~~~~~~~~~~PG~~~fdPlgl~~~~~~~~~~~~~El~nGRLAMla~~g~~~q~~~tg~gp~~nl~~~~~~p~~~n~~  160 (166)
                      ..+..  .+|.+||||. ||||||+++    +++|+||||||||||+|++||++|+++||+||++||.+|++||+|+||+
T Consensus       174 ~~~~~--~gd~~YPGG~-FDPLgl~~~----~~~k~kEIKNGRLAM~A~lGf~~Q~~vTG~gPi~nL~~hladP~~~ni~  246 (250)
T PLN00101        174 QYSLP--PNEVGYPGGI-FNPLNFAPT----EEAKEKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSDPWHNTIV  246 (250)
T ss_pred             ccccC--CccccCCCCc-cCccCCCcc----HHHHHHHHhhcchHHHHHhhHhheehccCCChHHHHHHHhcCCcccchh
Confidence            21222  2467899995 999999864    3789999999999999999999999999999999999999999999999


Q ss_pred             eccc
Q 031053          161 TSLK  164 (166)
Q Consensus       161 ~~~~  164 (166)
                      ++++
T Consensus       247 ~~~~  250 (250)
T PLN00101        247 QTLS  250 (250)
T ss_pred             hhcC
Confidence            9975

>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional

Probab=100.00  E-value=4.6e-42  Score=289.13  Aligned_cols=155  Identities=42%  Similarity=0.757  Sum_probs=134.1

Q ss_pred             CccccchhhhhhhccCCCCCccccccccccCccCCCCccccCCChhHHHHHHHHHhhhhhhhhhccccCCCCCCcccccc
Q 031053            1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLG   80 (166)
Q Consensus         1 MLA~~G~lvpE~l~~~G~~~~~~~~~w~~ag~i~~~g~~~~~~~~~~l~~~q~ll~g~vE~~R~~~~~~pg~~~~~~~~~   80 (166)
                      |||++|+++||++++.|++.   ...||++++      ..|+.++.+++++|+++||++|.+||+++.+||+.+.++.++
T Consensus       112 MLA~~G~~~~e~l~~~g~~~---~~~w~~Ag~------~~~~~~~~~l~~~q~~lmG~~E~~R~~~~~~~g~~~~~~~~~  182 (267)
T PLN00098        112 MLAVAGILIPECLERLGFIE---NFSWYDAGA------REYFADPTTLFVVQMVLMGWAEGRRWADLIKPGCVDIEPKLP  182 (267)
T ss_pred             HHHHHHHHHHHHhcCCCccc---ccccccccc------hhhccCchHHHHHHHHHHHHHHHHHhhcccCCcccccccccc
Confidence            99999999999998888754   357999764      357777888999999999999999999999999877665543


Q ss_pred             cccccCCCCCCCCCCCCccccCCCC-CChhhhhHHHHHHhhhhhHHHHHhhhhhhhhccccccchhhhHhhhcCCcccce
Q 031053           81 FEKYLGGSGDPAYPGGPLFNPLGLG-KDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV  159 (166)
Q Consensus        81 ~~~~~~~~~~~~~PG~~~fdPlgl~-~~~~~~~~~~~~El~nGRLAMla~~g~~~q~~~tg~gp~~nl~~~~~~p~~~n~  159 (166)
                      .....  ..|.+||||++|||+|+. +|+++++++|++|||||||||+|++||++|+.+||+||++||.+||+||+|+||
T Consensus       183 ~~~~~--~~d~~yPGg~~FDPlgl~~~d~~~~~~~k~kEikNGRLAM~A~~G~~~q~~vTG~gPl~nL~~hladP~~~n~  260 (267)
T PLN00098        183 NKTNP--KPDVGYPGGLWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFCFQAVYTGEGPIENLMAHLADPGHCNV  260 (267)
T ss_pred             ccccC--CCCCCCCCCccCCcccCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhcCCChHHHHHHHhcCcccccc
Confidence            22211  135689999999999997 589999999999999999999999999999999999999999999999999999


Q ss_pred             eeccccC
Q 031053          160 LTSLKFH  166 (166)
Q Consensus       160 ~~~~~~~  166 (166)
                      +++++.+
T Consensus       261 ~~~~~~~  267 (267)
T PLN00098        261 FSAFTSH  267 (267)
T ss_pred             hhhccCC
Confidence            9998754

>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional

Probab=100.00  E-value=1.2e-41  Score=283.29  Aligned_cols=150  Identities=45%  Similarity=0.769  Sum_probs=131.6

Q ss_pred             CccccchhhhhhhccCCCCCccccccccccCccCCCCccccCCChhHHHHHHHHHhhhhhhhhhccccCCCCCCcccccc
Q 031053            1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLG   80 (166)
Q Consensus         1 MLA~~G~lvpE~l~~~G~~~~~~~~~w~~ag~i~~~g~~~~~~~~~~l~~~q~ll~g~vE~~R~~~~~~pg~~~~~~~~~   80 (166)
                      |||++||++||++++.|+..   .++||++++..     .|+....+++++|+++||++|.+||+++++||+++.++++.
T Consensus        94 MLa~~G~lv~e~l~~~g~~~---~p~W~~Ag~~~-----~~~~~~~~l~~i~~~lmg~~E~~r~~~~~~pg~~~~~p~~~  165 (244)
T PLN00097         94 MLGLAGCVAPELLTKIGMAD---LPNWIDAAKWD-----GYWAGAGPLFFIQMAMFNWAEIRRWQDMKAPGSMNEDPLFG  165 (244)
T ss_pred             HHHHhhhhHHHHhcCCCccc---CCccccCCcch-----hccccchhHHHHHHHHHHHHHHHHhhcccCCCccccccccc
Confidence            99999999999999888743   35799987531     25656678999999999999999999999999998888876


Q ss_pred             cccccCCCCCCCCCCCCccccCCCCCChhhhhHHHHHHhhhhhHHHHHhhhhhhhhccccccchhhhHhhhcCCccccee
Q 031053           81 FEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVL  160 (166)
Q Consensus        81 ~~~~~~~~~~~~~PG~~~fdPlgl~~~~~~~~~~~~~El~nGRLAMla~~g~~~q~~~tg~gp~~nl~~~~~~p~~~n~~  160 (166)
                      .++... ..|..|||+. |||+|+.+|+++++++|++|||||||||+|++||++|+++||+||++||.+|++||+|+||+
T Consensus       166 ~~~~~~-~~d~gYPgg~-FDPlgl~~d~~~~~~lk~kEiknGRLAM~A~~G~~~q~~vTGkGPl~nL~~HladP~~~n~~  243 (244)
T PLN00097        166 ANKGDT-NTDVGYPKGL-FDKFGWAKDEKKAAELKLKEIANGRLAMLAFLGCCAQAIQTGTGPVDNLFSHLADPGHNGIF  243 (244)
T ss_pred             cccCCc-ccccCCCCCC-CCccccCCCHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhccCCCHHHHHHHHhcCccccccC
Confidence            554222 2467899995 99999999999999999999999999999999999999999999999999999999999996

>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional

Probab=100.00  E-value=2.1e-41  Score=283.33  Aligned_cols=156  Identities=47%  Similarity=0.898  Sum_probs=131.1

Q ss_pred             CccccchhhhhhhccCCCCCccccccccccCccCCCCccccCCChhHHHHHHHHHhhhhhhhhhccccCCCCCCccc-cc
Q 031053            1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQY-FL   79 (166)
Q Consensus         1 MLA~~G~lvpE~l~~~G~~~~~~~~~w~~ag~i~~~g~~~~~~~~~~l~~~q~ll~g~vE~~R~~~~~~pg~~~~~~-~~   79 (166)
                      |||++|+++||+++..|+..   .+.|++++...    + .+.+.++++++|+++||++|.+|+.++.+||+...+. ++
T Consensus        95 MlA~~G~l~~e~~~~~g~~~---~p~w~~ag~~~----~-~~~~~~~~~~~q~~~mG~~E~~R~~~~~~pg~~~~~g~~~  166 (252)
T PLN00147         95 MAGVAGILFTDLLRVTGIRN---LPVWYEAGAVK----F-EFASTRTLFVVQLLLMGFAETKRYMDFVSPGSQAKEGSFF  166 (252)
T ss_pred             HHHHhhhhHHHHhccCCCcC---Ccchhhcccch----h-ccccchHHHHHHHHHHHHHHHHhhccccCCCccccccccc
Confidence            99999999999998887753   35799976321    1 2345578899999999999999999999999875532 23


Q ss_pred             ccccccCCCCCCCCCCCCccccCCCCCChhhhhHHHHHHhhhhhHHHHHhhhhhhhhccccccchhhhHhhhcCCcccce
Q 031053           80 GFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV  159 (166)
Q Consensus        80 ~~~~~~~~~~~~~~PG~~~fdPlgl~~~~~~~~~~~~~El~nGRLAMla~~g~~~q~~~tg~gp~~nl~~~~~~p~~~n~  159 (166)
                      +.+....+ .+++||||++|||+||.+|+++++++|+||||||||||+|++|+++|+++||+||++||.+|++||+|+||
T Consensus       167 g~~~~~~~-~~~~yPGd~~FDPlGl~~d~~~~~~~k~kEikNGRLAMlA~~G~~~q~~vtg~Gp~~nL~~hladP~~~ni  245 (252)
T PLN00147        167 GLEAALEG-LEPGYPGGPLFNPLGLAKDIENAHDWKLKEIKNGRLAMVAMLGFFVQASVTHTGPIDNLLTHLSDPWHKTI  245 (252)
T ss_pred             cccccccc-cCCCCcccccCCccccCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCChHHHHHHHhcCcccchh
Confidence            33322222 35679999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eecccc
Q 031053          160 LTSLKF  165 (166)
Q Consensus       160 ~~~~~~  165 (166)
                      ++++..
T Consensus       246 ~~~~~~  251 (252)
T PLN00147        246 IQTLSH  251 (252)
T ss_pred             hhhhcC
Confidence            999875

>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional

Probab=100.00  E-value=6.3e-40  Score=275.55  Aligned_cols=144  Identities=46%  Similarity=0.851  Sum_probs=123.6

Q ss_pred             CccccchhhhhhhccCCCCCccccccccccCc-cCCCCccccCCCh--------hHHHHHHHHHhhhhhhhhhccccCCC
Q 031053            1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPG   71 (166)
Q Consensus         1 MLA~~G~lvpE~l~~~G~~~~~~~~~w~~ag~-i~~~g~~~~~~~~--------~~l~~~q~ll~g~vE~~R~~~~~~pg   71 (166)
                      |||++|+++||++++.|+.+.+  ..||++++ +..+|+++|++++        .+++++|+++||++|.+|+++.  |.
T Consensus       103 MLa~~G~i~~e~l~~~g~~~~~--~~W~~ag~~~~~~gg~~y~~~p~~~~~~~~~a~~~~qv~lmg~~E~~r~~~~--~~  178 (262)
T PLN00025        103 MLGALGCVTPELLAKNGVKFGE--AVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVNGG--PL  178 (262)
T ss_pred             HHHHhhhhhHHHhhcCCcCcCc--ccccccccccccccccccccCcccchhhhHHHHHHHHHHHHHHHHHhcccCC--cc
Confidence            9999999999999887775533  47999986 5567777888765        4678889999999999998762  11


Q ss_pred             CCCcccccccccccCCCCCCCCCCCCccccCCCCCChhhhhHHHHHHhhhhhHHHHHhhhhhhhhccccccchhhhHhhh
Q 031053           72 SMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHL  151 (166)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~PG~~~fdPlgl~~~~~~~~~~~~~El~nGRLAMla~~g~~~q~~~tg~gp~~nl~~~~  151 (166)
                      .              ...|..||||+ |||+|+++|+++++++|++|||||||||+|++||++|+++||+||++||.+||
T Consensus       179 ~--------------~~~d~~yPG~~-FDPlGl~~d~~~~~~~k~kEikNGRLAMlA~~G~~~q~~vTG~GPlenL~~hl  243 (262)
T PLN00025        179 G--------------EGLDPLYPGGS-FDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHL  243 (262)
T ss_pred             c--------------ccccCcCCccc-CCccccCCCHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhhcCCChHHHHHHHh
Confidence            1              01356799998 99999999999999999999999999999999999999999999999999999


Q ss_pred             cCCcccceeecc
Q 031053          152 ADPVNNNVLTSL  163 (166)
Q Consensus       152 ~~p~~~n~~~~~  163 (166)
                      +||+|+||+++.
T Consensus       244 adP~~~n~~~~~  255 (262)
T PLN00025        244 ADPVANNAWAYA  255 (262)
T ss_pred             cCccccchhhhh
Confidence            999999998864

>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional

Probab=100.00  E-value=9.6e-39  Score=270.94  Aligned_cols=135  Identities=36%  Similarity=0.711  Sum_probs=116.2

Q ss_pred             CccccchhhhhhhccCCCCCccccccccccCccCC-CCccccCCCh-----hHHHHHHHHHhhhhhhhhhccccCCCCCC
Q 031053            1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPP-AGTYNYWADP-----YTLFVLEMALMGFAEHRRFQDWANPGSMG   74 (166)
Q Consensus         1 MLA~~G~lvpE~l~~~G~~~~~~~~~w~~ag~i~~-~g~~~~~~~~-----~~l~~~q~ll~g~vE~~R~~~~~~pg~~~   74 (166)
                      |||++||++||++.         +..|+++|++.. .| ..|++.+     .+++++|+++||++|.+|+++..      
T Consensus       145 MLAvaG~lvpEll~---------G~~W~~aG~~~~~~g-~~y~g~~~p~~~~~l~~iqvllmG~~E~~R~~~~~------  208 (286)
T PLN00187        145 MLATLGALSVEALT---------GVTWQDAGKVELVDG-SSYLGQPLPFSITTLIWIEVLVIGYIEFQRNAELD------  208 (286)
T ss_pred             HHHhhchhhHHhcc---------CCccccccccccccc-ccccccccchhHHHHHHHHHHHHHHHHhhhccCCC------
Confidence            99999999999873         236999887432 33 2465543     57899999999999999986521      


Q ss_pred             cccccccccccCCCCCCCCCCCCccccCCCCCChhhhhHHHHHHhhhhhHHHHHhhhhhhhhccccccchhhhHhhhcCC
Q 031053           75 RQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADP  154 (166)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~PG~~~fdPlgl~~~~~~~~~~~~~El~nGRLAMla~~g~~~q~~~tg~gp~~nl~~~~~~p  154 (166)
                                   ..+..||||+.|||+|+++|+++++++|++|||||||||+|++||++|+++||+||++||.+|++||
T Consensus       209 -------------~~~~~yPGg~~FDPlGl~~d~e~~~~~k~kEIkNGRLAMlA~lG~~vq~~vtg~GPi~nL~~Hladp  275 (286)
T PLN00187        209 -------------PEKRLYPGGKFFDPLGLAADPEKKETLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDP  275 (286)
T ss_pred             -------------CCCCCCCccccccccccCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCChHHHHHHHhcCc
Confidence                         0245699998899999999999999999999999999999999999999999999999999999999


Q ss_pred             cccceeeccc
Q 031053          155 VNNNVLTSLK  164 (166)
Q Consensus       155 ~~~n~~~~~~  164 (166)
                      +|+||++++.
T Consensus       276 ~~~n~~~~~~  285 (286)
T PLN00187        276 LHTTIIDTFS  285 (286)
T ss_pred             ccccHHHhcc
Confidence            9999999875

>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional

Probab=100.00  E-value=1.1e-37  Score=267.48  Aligned_cols=153  Identities=45%  Similarity=0.778  Sum_probs=124.2

Q ss_pred             CccccchhhhhhhccCCCCCccccccccccCccCCCC-ccccCCCh----------hHHHHHHHHHhhhhhhhhhccccC
Q 031053            1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAG-TYNYWADP----------YTLFVLEMALMGFAEHRRFQDWAN   69 (166)
Q Consensus         1 MLA~~G~lvpE~l~~~G~~~~~~~~~w~~ag~i~~~g-~~~~~~~~----------~~l~~~q~ll~g~vE~~R~~~~~~   69 (166)
                      |||++|+++||++++.|... ...++||++|.....+ ..+|++.+          .+++++|+++|+.+|.+|++++.+
T Consensus       160 MLA~~G~lv~e~l~~~g~~~-~~~p~W~~aG~~~~~g~~~~y~~~p~~~~~~~q~l~~i~~iEillm~g~E~~R~~~~~~  238 (324)
T PLN00171        160 MLAALGVVIPEVLDLFGAVH-FAEPVWWRVGYAKLQGDTLDYLGIPGLHIAGSQGVIVIAICQALLMVGPEYARYCGIEA  238 (324)
T ss_pred             HHHHhhHHHHHHhccCCccc-cCccchhhcccccccccchhhccCCccccchhHHHHHHHHHHHHHhhhhhheeeccccc
Confidence            99999999999998876542 1235799998644322 23344333          357899999999999999988754


Q ss_pred             CCCCCcccccccccccCCCCCCCCCCCCccccCCCCCChhhhhHHHHHHhhhhhHHHHHhhhhhhhhccccccchhhhHh
Q 031053           70 PGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLD  149 (166)
Q Consensus        70 pg~~~~~~~~~~~~~~~~~~~~~~PG~~~fdPlgl~~~~~~~~~~~~~El~nGRLAMla~~g~~~q~~~tg~gp~~nl~~  149 (166)
                      +++.+        ...+  +|..||||.+|||+|+++|+++++++|++|||||||||+|++||++|+.+||++|++||.+
T Consensus       239 ~~~~g--------~~~P--GD~gYPGG~~FDPLGl~~d~~~~~~~k~kELkNGRLAM~A~lG~~vq~~vTG~GPlenL~~  308 (324)
T PLN00171        239 LEPLG--------IYLP--GDINYPGGALFDPLGLSKDPVAFEDLKVKEIKNGRLAMVAWLGFYIQAAVTGKGPVQNLVD  308 (324)
T ss_pred             cCCcc--------ccCC--CcccCCcccCCCccccCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhHhhcCCChHHHHHH
Confidence            43221        1112  4667999988999999999999999999999999999999999999999999999999999


Q ss_pred             hhcCCcccceeeccc
Q 031053          150 HLADPVNNNVLTSLK  164 (166)
Q Consensus       150 ~~~~p~~~n~~~~~~  164 (166)
                      |++||+||||++++.
T Consensus       309 hladP~~~Ni~~~~~  323 (324)
T PLN00171        309 HLSDPLHNNLLSSLK  323 (324)
T ss_pred             HhcCccccchHHHhc
Confidence            999999999999874

>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional

Probab=100.00  E-value=7.2e-37  Score=254.91  Aligned_cols=135  Identities=41%  Similarity=0.732  Sum_probs=110.3

Q ss_pred             CccccchhhhhhhccCCCCCccccccccccCcc--CCCCccccCC------ChhHHHHHHHHHhhhhhhhhhccccCCCC
Q 031053            1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVI--PPAGTYNYWA------DPYTLFVLEMALMGFAEHRRFQDWANPGS   72 (166)
Q Consensus         1 MLA~~G~lvpE~l~~~G~~~~~~~~~w~~ag~i--~~~g~~~~~~------~~~~l~~~q~ll~g~vE~~R~~~~~~pg~   72 (166)
                      |||++|+++||+++.         ..|+++++.  ...|...|++      ..++++++|+++||++|.+|+... .+  
T Consensus        94 MLAv~G~i~~E~l~~---------~~w~~a~~~~~~~~g~~~~~g~~~~~~~l~~~~~iqvl~ig~~E~~r~~~~-~~--  161 (243)
T PLN00099         94 MLAVPGILVPEALGL---------GNWVKAQEWAAIPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEK-DP--  161 (243)
T ss_pred             HHHHhhHHHHHHhcc---------CCcccccchhccCcchhhhccCccchhhHHHHHHHHHHHHHHHHHHhhccC-CC--
Confidence            999999999998753         146665531  1123333432      336788999999999999887431 11  


Q ss_pred             CCcccccccccccCCCCCCCCCCCCccccCCCCCChhhhhHHHHHHhhhhhHHHHHhhhhhhhh-ccccccchhhhHhhh
Q 031053           73 MGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQG-LVTGVGPYQNLLDHL  151 (166)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~PG~~~fdPlgl~~~~~~~~~~~~~El~nGRLAMla~~g~~~q~-~~tg~gp~~nl~~~~  151 (166)
                                      .+..|||| .|||+|+.+|+++++++|+||||||||||+|++||++|+ .+||++|++||.+|+
T Consensus       162 ----------------~~~~yPGd-~FDPlGl~kd~~~~~~~k~kELkNGRLAMiA~lGf~vQ~~~~~G~gPl~nL~~hl  224 (243)
T PLN00099        162 ----------------EKKKYPGG-AFDPLGYSKDPKKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHL  224 (243)
T ss_pred             ----------------CCCcCCCC-cCCcccccCCHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCChHHHHHHHh
Confidence                            23469999 799999999999999999999999999999999999998 579999999999999


Q ss_pred             cCCcccceeeccc
Q 031053          152 ADPVNNNVLTSLK  164 (166)
Q Consensus       152 ~~p~~~n~~~~~~  164 (166)
                      +||+|+||++.++
T Consensus       225 adp~~~N~~~~~~  237 (243)
T PLN00099        225 ADPWHNNIGDIII  237 (243)
T ss_pred             cCCccCceeeeec
Confidence            9999999999887

>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional

Probab=100.00  E-value=3.6e-35  Score=244.57  Aligned_cols=125  Identities=34%  Similarity=0.541  Sum_probs=106.3

Q ss_pred             CccccchhhhhhhccCCCCCccccccccccCccCCCCccccCCChhHHHHHHHHHhhhhhhhhhccccCCCCCCcccccc
Q 031053            1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLG   80 (166)
Q Consensus         1 MLA~~G~lvpE~l~~~G~~~~~~~~~w~~ag~i~~~g~~~~~~~~~~l~~~q~ll~g~vE~~R~~~~~~pg~~~~~~~~~   80 (166)
                      |||++|+++||+++.         +.|++++..      .|..+.++++++|+++||++|.+|+++++++|+        
T Consensus        85 Mla~~G~~~~E~~~~---------P~w~~ag~~------~~~~~~~~l~~iqill~g~~E~~r~~~~~~~g~--------  141 (246)
T PLN00100         85 MAATAGILFTDAVGL---------PKFWEAGAE------KYGLDLQTLVLIQVVVMAVLEAARYRGFMKTGE--------  141 (246)
T ss_pred             HHHHhhhhHHHHhcc---------cchhhcchh------hhccchhHHHHHHHHHHHHHhhhcccccccccc--------
Confidence            999999999998752         358886632      233455788999999999999999988765432        


Q ss_pred             cccccCCCCCCCCCCCCccccCCCCCChhhhhHHHHHHhhhhhHHHHHhhhhhhhhccccccchhhhHhhhcCCccccee
Q 031053           81 FEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVL  160 (166)
Q Consensus        81 ~~~~~~~~~~~~~PG~~~fdPlgl~~~~~~~~~~~~~El~nGRLAMla~~g~~~q~~~tg~gp~~nl~~~~~~p~~~n~~  160 (166)
                                .++|||+.|||+|+++     +++|+||||||||||+|++||++|+++||+||++||.+|++||+|+||+
T Consensus       142 ----------~~~pg~~~FDPLGl~~-----~~~K~KEIkNGRLAMlA~lG~~~Q~~vTG~gPlenL~~hladP~~~ni~  206 (246)
T PLN00100        142 ----------SGVLSFFPFDPTGMDS-----PEMKVKEVKNGRLAMLAFLGMVSQYAVTGKSPLEGLKAHMANPGHVNIF  206 (246)
T ss_pred             ----------cCCCCCCCCCcccccH-----HHHHHHHHhhhhHHHHHHHHHhhhhhhcCCChHHHHHHhccCCcccccc
Confidence                      3468999999999963     5789999999999999999999999999999999999999999999999


Q ss_pred             ecc
Q 031053          161 TSL  163 (166)
Q Consensus       161 ~~~  163 (166)
                      ++.
T Consensus       207 ~~~  209 (246)
T PLN00100        207 TSS  209 (246)
T ss_pred             cCC
Confidence            874

>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional

Probab=99.98  E-value=1e-32  Score=230.98  Aligned_cols=135  Identities=31%  Similarity=0.570  Sum_probs=109.4

Q ss_pred             CccccchhhhhhhccCCCCCccccccccccCccCCCCccccCCChhHHHHHHHHHhhhhhhhhhccccCCCCCCcccccc
Q 031053            1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLG   80 (166)
Q Consensus         1 MLA~~G~lvpE~l~~~G~~~~~~~~~w~~ag~i~~~g~~~~~~~~~~l~~~q~ll~g~vE~~R~~~~~~pg~~~~~~~~~   80 (166)
                      |||++||++||++.         +..||++|+.+..  . ......+++++|+++||++|.+||+++++||++..+++++
T Consensus       107 MLa~~G~~v~e~l~---------g~~w~~aG~~~~~--~-~p~~~~~l~~~q~~lmg~~E~~R~~~~~~P~~~~~~~~~p  174 (255)
T PLN00170        107 MAAVVGIFVGQAWS---------GIPWFEAGADPGA--I-APFSFGSLLGTQLLLMGWVESKRWVDFFNPDSQSVEWATP  174 (255)
T ss_pred             HHHHHhhhhHHHcc---------CCChhhCCccccc--c-CccchHHHHHHHHHHhhhhhheeeccccCCcccccccccc
Confidence            99999999999874         2369998864311  1 1112357899999999999999999999999988777654


Q ss_pred             cc----cccCCCCCCCCCCCCccccCCCCC---------ChhhhhHHHHHHhhhhhHHHHHhhhhhhhhccccccchhhh
Q 031053           81 FE----KYLGGSGDPAYPGGPLFNPLGLGK---------DEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNL  147 (166)
Q Consensus        81 ~~----~~~~~~~~~~~PG~~~fdPlgl~~---------~~~~~~~~~~~El~nGRLAMla~~g~~~q~~~tg~gp~~nl  147 (166)
                      ..    ......++..|||+..|||+||++         |+++++++|++|||||||||+|++||++|+ .||+||++||
T Consensus       175 ~~~~~~~f~~~~g~~~yPGG~~FDPLGl~~~~~~~~~~~d~~~~~~lk~kEIKnGRLAMlA~lGf~~Qa-~~g~~p~~~l  253 (255)
T PLN00170        175 WSRTAENFANATGLQGYPGGKFFDPLGLAGTVKDGVYIPDFEKLERLKLAEIKHARLAMVAMLIFYFEA-GQGKTPLGAL  253 (255)
T ss_pred             cccccccccccCCCcccCCCcccCccccccccccccccCCHHHHHHHHHHHHhhhHHHHHHHHhHheee-ccCCCchhhh
Confidence            32    111122466899998899999985         789999999999999999999999999999 7999999998


Q ss_pred             H
Q 031053          148 L  148 (166)
Q Consensus       148 ~  148 (166)
                      .
T Consensus       254 ~  254 (255)
T PLN00170        254 G  254 (255)
T ss_pred             c
Confidence            4

>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional

Probab=99.91  E-value=8.1e-25  Score=179.29  Aligned_cols=118  Identities=29%  Similarity=0.314  Sum_probs=84.8

Q ss_pred             CccccchhhhhhhccCCCCCcc-ccccccccC-ccCCCCccccCCChhHHHHHHHH-HhhhhhhhhhccccCCCCCCccc
Q 031053            1 MLGAVGAIAPEILGKAGLIPQE-TALAWFQTG-VIPPAGTYNYWADPYTLFVLEMA-LMGFAEHRRFQDWANPGSMGRQY   77 (166)
Q Consensus         1 MLA~~G~lvpE~l~~~G~~~~~-~~~~w~~ag-~i~~~g~~~~~~~~~~l~~~q~l-l~g~vE~~R~~~~~~pg~~~~~~   77 (166)
                      |||++|+++||+++.+|.+... ..++|+++. ++|.           .-+++|++ +||++|..+..    +....   
T Consensus        87 MlA~~G~~~~~~~~~pG~~~~~~~~p~~~~a~~~~~~-----------~g~~~Qi~~~ig~~E~~~~~----~~~~~---  148 (209)
T PLN00089         87 MLAVAGFIAPDFVRIPGEAYSFAAIPKTIDAHDALLK-----------SGAMIQIFAWIGFVDLAVSA----PAAAA---  148 (209)
T ss_pred             HHHHHHHHHHHHHcCCCccccccccccHHHHHHhhcc-----------cccHHHHHHHHHHHHHHHhh----ccccc---
Confidence            9999999999998888864211 112333322 1111           11256865 69999965322    11100   


Q ss_pred             ccccccccCCCCCCCCCCCCccccCCCC-CChhhhhHHHHHHhhhhhHHHHHhhhhhhhhccccccchh
Q 031053           78 FLGFEKYLGGSGDPAYPGGPLFNPLGLG-KDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQ  145 (166)
Q Consensus        78 ~~~~~~~~~~~~~~~~PG~~~fdPlgl~-~~~~~~~~~~~~El~nGRLAMla~~g~~~q~~~tg~gp~~  145 (166)
                            .   ..+.++|||++|||+|+. +|+++++++|++|||||||||+|++|+++|+++||+++++
T Consensus       149 ------~---~~~~~~PGd~gfdplgl~~~d~~~~~~~~~~El~NGRlAM~a~~g~~~~~~~tg~g~~~  208 (209)
T PLN00089        149 ------A---AEFDRTPGDFGFDLLALYPKDAAKMEKKKDKELKNGRLAMVAIGGIATGSAITGHGFPY  208 (209)
T ss_pred             ------c---ccCCCCCCCcCccccccCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCCCc
Confidence                  0   022469999999999995 7899999999999999999999999999999999998763

>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein

Probab=99.87  E-value=1.5e-22  Score=157.72  Aligned_cols=114  Identities=35%  Similarity=0.434  Sum_probs=84.0

Q ss_pred             CccccchhhhhhhccCCC-CCccccccccccCccCCCCccccCCChhHHHHHH-HHHhhhhhhhhhccccCCCCCCcccc
Q 031053            1 MLGAVGAIAPEILGKAGL-IPQETALAWFQTGVIPPAGTYNYWADPYTLFVLE-MALMGFAEHRRFQDWANPGSMGRQYF   78 (166)
Q Consensus         1 MLA~~G~lvpE~l~~~G~-~~~~~~~~w~~ag~i~~~g~~~~~~~~~~l~~~q-~ll~g~vE~~R~~~~~~pg~~~~~~~   78 (166)
                      |||++|++++|+++..+. ......+.|++++.         .. .+..+++| +++||++|.+|.++...+.+..    
T Consensus        41 MLa~~g~~v~e~~~~~~~~~~~~~~~~~~~~~~---------~~-~~~~~~~~~l~~ig~~e~~~~~~~~~~~~~~----  106 (156)
T PF00504_consen   41 MLAFVGALVQEAGTGFPGVPSFLGQPAWAEAGG---------IP-VPAAGWAQILLFIGALEPWRQQGVPEPGEGG----  106 (156)
T ss_dssp             HHHHHHHHHCHCHSTTTSSS-SSTSSSSSSTTS---------SS-SHSHHHHHHHHHHHHHHHHHHHHTTTCCTTS----
T ss_pred             hhhhHHHHHHHHhccCCcccccccccchhhhhh---------hh-hhhHHHHHHHHHHhHhhhhhcccccCCcccc----
Confidence            999999999999976432 21112334766431         11 23345544 6689999999998765443211    


Q ss_pred             cccccccCCCCCCCCCCCCccccCCCCCChhhhhHHHHHHhhhhhHHHHHhhhhhhhhc
Q 031053           79 LGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGL  137 (166)
Q Consensus        79 ~~~~~~~~~~~~~~~PG~~~fdPlgl~~~~~~~~~~~~~El~nGRLAMla~~g~~~q~~  137 (166)
                               ..+..+|||++|||+|+.+|+++.+++|.+||+||||||+|++|+++|+.
T Consensus       107 ---------~~~~~~pG~~~~dplgl~~~~~~~~~~~~~El~NGRlAMla~~g~~~~e~  156 (156)
T PF00504_consen  107 ---------GKDGRYPGDLGFDPLGLAKDPEEKEFMQLAELKNGRLAMLAFAGFVAQEA  156 (156)
T ss_dssp             ---------SSSSSSSSSSSSSTSSTSSSCHSHHCHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             ---------cccccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence                     13457999999999999989999999999999999999999999999973

LHC functions as a light receptor that captures and delivers excitation energy to photosystems I and II with which it is closely associated. Under changing light conditions, the reversible phosphorylation of light harvesting chlorophyll a/b binding proteins (LHCII) represents a system for balancing the excitation energy between the two photosystems []. The N terminus of the chlorophyll A-B binding protein extends into the stroma where it is involved with adhesion of granal membranes and photo-regulated by reversible phosphorylation of its threonine residues []. Both these processes are believed to mediate the distribution of excitation energy between photosystems I and II. This family also includes the photosystem II protein PsbS, which plays a role in energy-dependent quenching that increases thermal dissipation of excess absorbed light energy in the photosystem [].; PDB: 2O01_2 2WSF_2 2WSC_2 3LW5_2 2WSE_2 1RWT_D 2BHW_C 1VCR_A.

>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional

Probab=99.85  E-value=1.4e-21  Score=159.51  Aligned_cols=118  Identities=25%  Similarity=0.341  Sum_probs=77.8

Q ss_pred             Cccccchhhhhh-hccCCCCCccccccccccCccCCCCccccCCChhHHHHHHHH-HhhhhhhhhhccccCCCCCCcccc
Q 031053            1 MLGAVGAIAPEI-LGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMA-LMGFAEHRRFQDWANPGSMGRQYF   78 (166)
Q Consensus         1 MLA~~G~lvpE~-l~~~G~~~~~~~~~w~~ag~i~~~g~~~~~~~~~~l~~~q~l-l~g~vE~~R~~~~~~pg~~~~~~~   78 (166)
                      |||++|+++||+ .+.+|.+.. .+..+-+   +| .+ ...+...+..+|+|++ +||++|..++++..          
T Consensus        76 MlA~~G~~~~~~g~~~Pg~~~~-~g~~~~~---~p-~~-~~a~~~vp~~g~~qi~~~ig~~E~~~~~~~~----------  139 (202)
T PLN00120         76 MLAVVGYLVTEAGIRLPGDIDY-SGTSFSD---IP-NG-FAALDAIPTAGLLQILAFIGFLELAVMKDIT----------  139 (202)
T ss_pred             HHhhccceeecccccCCCcccc-ccccccc---cc-cc-hhhhhhcchhHHHHHHHHHHHHHHHhhcccc----------
Confidence            999999999997 444564421 1111211   11 11 1122333456688865 79999988765431          


Q ss_pred             cccccccCCCCCCCCCCCCccc--cCCCC-CChhhhhHHHHHHhhhhhHHHHHhhhhhhhhccccccch
Q 031053           79 LGFEKYLGGSGDPAYPGGPLFN--PLGLG-KDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPY  144 (166)
Q Consensus        79 ~~~~~~~~~~~~~~~PG~~~fd--Plgl~-~~~~~~~~~~~~El~nGRLAMla~~g~~~q~~~tg~gp~  144 (166)
                                ++.++|||+.++  ++|+. .|+++.+++|++|||||||||+|++|+++|+.++|..|+
T Consensus       140 ----------~~~~~pGd~~~g~~d~gfdp~~~~~~~~~~~~EL~NGRLAMiai~G~~~qe~l~g~~~~  198 (202)
T PLN00120        140 ----------GEGEFVGDFRNGYIDFGWDSFDEETKLKKRAIELNQGRAAQMGILALMVHEQLGVELPI  198 (202)
T ss_pred             ----------cCCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcC
Confidence                      112467743222  33333 278889999999999999999999999999999998775

>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional

Probab=99.68  E-value=1.4e-17  Score=140.72  Aligned_cols=57  Identities=37%  Similarity=0.587  Sum_probs=53.0

Q ss_pred             CCCCCCCCccccCCCCCChhhhhHHHHHHhhhhhHHHHHhhhhhhhhccccccchhh
Q 031053           90 DPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQN  146 (166)
Q Consensus        90 ~~~~PG~~~fdPlgl~~~~~~~~~~~~~El~nGRLAMla~~g~~~q~~~tg~gp~~n  146 (166)
                      |..+|||++|||+||++|+++++++|++||||||+||+|++|+++|+++++.|++++
T Consensus        76 dG~~pGD~GFDPlgl~~~~~~~~~~r~aEl~HGR~AMLA~~G~~~~e~l~~~g~~~~  132 (267)
T PLN00098         76 DGSLPGDFGFDPLGLGSDPELLKWFAQAELMHSRWAMLAVAGILIPECLERLGFIEN  132 (267)
T ss_pred             CCCCCCCCCcCccccCCCHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCcccc
Confidence            456999999999999999999999999999999999999999999999998887764

>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional

Probab=99.68  E-value=4.6e-17  Score=136.78  Aligned_cols=75  Identities=31%  Similarity=0.435  Sum_probs=63.6

Q ss_pred             hhhhhhccccCCCCCCcccccccccccCCCCCCCCCCCCccccCCCCCChhhhhHHHHHHhhhhhHHHHHhhhhhhhhcc
Q 031053           59 AEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLV  138 (166)
Q Consensus        59 vE~~R~~~~~~pg~~~~~~~~~~~~~~~~~~~~~~PG~~~fdPlgl~~~~~~~~~~~~~El~nGRLAMla~~g~~~q~~~  138 (166)
                      ..-+||.+..+|+++...|.     +    .|..+|||++|||++|.+|+++++++|++||+||||||+|++||++|+++
T Consensus        49 ~~~k~w~p~~~~~~~~~~P~-----~----l~g~~PGd~GFDPlgl~~d~e~~~~~r~~El~hGR~AMLa~~G~~v~e~l  119 (255)
T PLN00170         49 QPKKSWIPAVKGGGNLVDPE-----W----LDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAW  119 (255)
T ss_pred             CCCccccCCCCCCcccCCcc-----c----ccccCCCCCCcCccccCCCHHHHHHHHHHHhhccHHHHHHHHhhhhHHHc
Confidence            45568888888887654432     2    34569999999999999999999999999999999999999999999999


Q ss_pred             cccc
Q 031053          139 TGVG  142 (166)
Q Consensus       139 tg~g  142 (166)
                      +|..
T Consensus       120 ~g~~  123 (255)
T PLN00170        120 SGIP  123 (255)
T ss_pred             cCCC
Confidence            8764

>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional

Probab=99.66  E-value=5.4e-17  Score=136.12  Aligned_cols=55  Identities=36%  Similarity=0.633  Sum_probs=52.2

Q ss_pred             CCCCCCCCccccCCCCCChhhhhHHHHHHhhhhhHHHHHhhhhhhhhccccccch
Q 031053           90 DPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPY  144 (166)
Q Consensus        90 ~~~~PG~~~fdPlgl~~~~~~~~~~~~~El~nGRLAMla~~g~~~q~~~tg~gp~  144 (166)
                      |..+|||++|||+||++|+++++++|++||+||||||+|++|+++|+++++.|++
T Consensus        67 dG~~PGD~GFDPlGl~~d~~~~~~~r~aEl~hGRlAMla~~G~l~~e~l~~~g~~  121 (250)
T PLN00101         67 NGSLPGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGII  121 (250)
T ss_pred             CCCCCCccCCCccccCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCCCCc
Confidence            4569999999999999999999999999999999999999999999999998876

>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional

Probab=99.61  E-value=3.9e-16  Score=131.14  Aligned_cols=54  Identities=33%  Similarity=0.519  Sum_probs=49.9

Q ss_pred             CCCCCCCCCccccCCCCCChhhhhHHHHHHhhhhhHHHHHhhhhhhhhcccccc
Q 031053           89 GDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVG  142 (166)
Q Consensus        89 ~~~~~PG~~~fdPlgl~~~~~~~~~~~~~El~nGRLAMla~~g~~~q~~~tg~g  142 (166)
                      -|..+|||++|||+||.+|+++++++|++||||||+||+|++|+++|++++..+
T Consensus        58 Ldg~~pGD~GFDPlgl~~d~~~~~~~r~aElkhGR~AMlA~~G~l~~e~~~~~g  111 (252)
T PLN00147         58 LDGTLAGDFGFDPLGLGEDPESLKWYVQAELVHSRFAMAGVAGILFTDLLRVTG  111 (252)
T ss_pred             CCCCCCCccCCCcccccCCHHHHHHHHHHHhhccHHHHHHHhhhhHHHHhccCC
Confidence            356799999999999999999999999999999999999999999999987654

>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional

Probab=99.60  E-value=5e-16  Score=134.02  Aligned_cols=56  Identities=30%  Similarity=0.404  Sum_probs=50.8

Q ss_pred             CCCCCCCCCccccCCCCCChhhhhHHHHHHhhhhhHHHHHhhhhhhhhccccccch
Q 031053           89 GDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPY  144 (166)
Q Consensus        89 ~~~~~PG~~~fdPlgl~~~~~~~~~~~~~El~nGRLAMla~~g~~~q~~~tg~gp~  144 (166)
                      -|..+|||++|||+||++|+++++++|++||||||+||+|++|+++|+++++.+.+
T Consensus       123 LdG~lpGD~GFDPLGL~~dp~~l~~~reaELkHGR~AMLA~~G~lv~e~l~~~g~~  178 (324)
T PLN00171        123 LTGELPGDYGFDIAGLGKDPVAFDKYFNFEILHARWAMLAALGVVIPEVLDLFGAV  178 (324)
T ss_pred             cCCCCCcccCCCccccccCHHHHHHHHHHHhccchHHHHHHhhHHHHHHhccCCcc
Confidence            35669999999999999999999999999999999999999999999998765543

>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional

Probab=99.59  E-value=7.9e-16  Score=128.69  Aligned_cols=54  Identities=35%  Similarity=0.521  Sum_probs=50.4

Q ss_pred             CCCCCCCCccccCCCCCChhhhhHHHHHHhhhhhHHHHHhhhhhhhhccccccc
Q 031053           90 DPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGP  143 (166)
Q Consensus        90 ~~~~PG~~~fdPlgl~~~~~~~~~~~~~El~nGRLAMla~~g~~~q~~~tg~gp  143 (166)
                      |...|||++|||+||++|+++++++|++||+|||+||+|++|+++|+++++.+.
T Consensus        58 dG~~pGD~GfDPlGl~~~~~~~~~~r~aEl~hGR~AMLa~~G~lv~e~l~~~g~  111 (244)
T PLN00097         58 DGSLPCDYGFDPLNLGADPEMLKWFVQAELMHARWAMLGLAGCVAPELLTKIGM  111 (244)
T ss_pred             CCCCCCCCCCCccccCcCHHHHHHHHHHHHhcchHHHHHHhhhhHHHHhcCCCc
Confidence            456899999999999999999999999999999999999999999999987654

>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional

Probab=99.59  E-value=1e-15  Score=129.26  Aligned_cols=53  Identities=28%  Similarity=0.429  Sum_probs=49.2

Q ss_pred             CCCCCCCCccccCCCCCChhhhhHHHHHHhhhhhHHHHHhhhhhhhhcccccc
Q 031053           90 DPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVG  142 (166)
Q Consensus        90 ~~~~PG~~~fdPlgl~~~~~~~~~~~~~El~nGRLAMla~~g~~~q~~~tg~g  142 (166)
                      |..+|||++|||+||++|+++++++|++||+|||+||+|++|+++|+++++.+
T Consensus        67 dg~~pGD~GfDPlGls~dp~~~~~~re~El~hGR~AMLa~~G~i~~e~l~~~g  119 (262)
T PLN00025         67 TGEFPGDYGWDTAGLSADPETFARNRELEVIHARWAMLGALGCVTPELLAKNG  119 (262)
T ss_pred             cCcCCCCCCCCccccccCHHHHHHHHHHHHhccHHHHHHHhhhhhHHHhhcCC
Confidence            45689999999999999999999999999999999999999999999987543

>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional

Probab=99.57  E-value=2.4e-15  Score=128.21  Aligned_cols=52  Identities=40%  Similarity=0.611  Sum_probs=47.4

Q ss_pred             CCCCCCCCccccCCCCCChhh-------------------------------------------hhHHHHHHhhhhhHHH
Q 031053           90 DPAYPGGPLFNPLGLGKDEKS-------------------------------------------MKDFKLKEVKNGRLAM  126 (166)
Q Consensus        90 ~~~~PG~~~fdPlgl~~~~~~-------------------------------------------~~~~~~~El~nGRLAM  126 (166)
                      |..+|||++|||+||+++||.                                           ++++|++||+|||+||
T Consensus        66 dGslpGD~GfDplgL~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~f~l~r~REaELiHGRwAM  145 (286)
T PLN00187         66 DGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLAGDVIGTRTEASEIKSTPFQPYSEVFGLQRFRECELIHGRWAM  145 (286)
T ss_pred             cCCCCCcCCCCcccccCChHhhhhcccchhhhhhhcccccccccccccccccccccCcchhhhHHHHHHHHHhhhhHHHH
Confidence            455999999999999988886                                           5999999999999999


Q ss_pred             HHhhhhhhhhccccc
Q 031053          127 LAILGYFVQGLVTGV  141 (166)
Q Consensus       127 la~~g~~~q~~~tg~  141 (166)
                      +|++||+++|+++|.
T Consensus       146 LAvaG~lvpEll~G~  160 (286)
T PLN00187        146 LATLGALSVEALTGV  160 (286)
T ss_pred             HHhhchhhHHhccCC
Confidence            999999999998754

>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional

Probab=99.55  E-value=2.6e-15  Score=125.58  Aligned_cols=50  Identities=32%  Similarity=0.473  Sum_probs=47.2

Q ss_pred             CCCCCCCCccccCCCCCChhhhhHHHHHHhhhhhHHHHHhhhhhhhhccc
Q 031053           90 DPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVT  139 (166)
Q Consensus        90 ~~~~PG~~~fdPlgl~~~~~~~~~~~~~El~nGRLAMla~~g~~~q~~~t  139 (166)
                      |..+|||++|||+||++++++++++|++||||||+||+|++|+++|++++
T Consensus        49 dg~~pGd~GFDPlgl~~~~~~~~~~r~aEl~hGR~AMla~~G~~~~E~~~   98 (246)
T PLN00100         49 DGTMAGDYGFDPLRLGANPETLPYLQEAELMNGRWAMAATAGILFTDAVG   98 (246)
T ss_pred             CCCCCCCcCCCccccCCCHHHHHHHHHHHhhcchHHHHHHhhhhHHHHhc
Confidence            45699999999999999999999999999999999999999999999875

>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional

Probab=99.54  E-value=3.8e-15  Score=124.66  Aligned_cols=50  Identities=34%  Similarity=0.520  Sum_probs=47.2

Q ss_pred             CCCCCCCCccccCCCCCChhhhhHHHHHHhhhhhHHHHHhhhhhhhhccc
Q 031053           90 DPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVT  139 (166)
Q Consensus        90 ~~~~PG~~~fdPlgl~~~~~~~~~~~~~El~nGRLAMla~~g~~~q~~~t  139 (166)
                      |..+|||++|||++|++++++++++|++||||||+||+|++|+++|++++
T Consensus        58 dg~~pgd~GfDPlgls~~~~~~~~~r~~ELkHGR~AMLAv~G~i~~E~l~  107 (243)
T PLN00099         58 DGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALG  107 (243)
T ss_pred             CCCCCcccCCCccccccCHHHHHHHHHHhccCCcHHHHHHhhHHHHHHhc
Confidence            45699999999999999999999999999999999999999999999865

>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional

Probab=99.51  E-value=1.1e-14  Score=123.14  Aligned_cols=56  Identities=34%  Similarity=0.500  Sum_probs=48.1

Q ss_pred             CCCCCCCCccccCCCCCChh------hhhHHHHHHhhhhhHHHHHhhhhhhhhccccccchhh
Q 031053           90 DPAYPGGPLFNPLGLGKDEK------SMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQN  146 (166)
Q Consensus        90 ~~~~PG~~~fdPlgl~~~~~------~~~~~~~~El~nGRLAMla~~g~~~q~~~tg~gp~~n  146 (166)
                      |...|||++|||+||+ |++      +.+++|.+||+|||+||+|++||++|+++++.|.+.+
T Consensus        56 dG~lPGD~GFDPlGL~-~p~~~~~~~~~~~~r~aEL~hGR~AMLa~~G~lv~Ell~~~g~~~~  117 (262)
T PLN00048         56 DGTLPGDFGFDPLGLS-DPEGAGGFIEPQWLAYGEVINGRFAMLGAAGAIAPEILGKAGLIPQ  117 (262)
T ss_pred             CCCCCCccCCCccccC-CccccccchhHHHHHHHHhhcchHHHHHHhhHHHHHHhccCCcccc
Confidence            4568999999999997 443      4578899999999999999999999999988777643

>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein

Probab=99.47  E-value=5e-14  Score=109.65  Aligned_cols=50  Identities=42%  Similarity=0.651  Sum_probs=46.3

Q ss_pred             CCCCCCCccccCCCCCChhhhhHHHHHHhhhhhHHHHHhhhhhhhhccccc
Q 031053           91 PAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGV  141 (166)
Q Consensus        91 ~~~PG~~~fdPlgl~~~~~~~~~~~~~El~nGRLAMla~~g~~~q~~~tg~  141 (166)
                      ..++||++|||+||++++ +++++|..||+|||+||+|++|++++++.++.
T Consensus         7 G~~~~~~gfDPlgl~~~~-~~~~~R~aEl~hGR~AMLa~~g~~v~e~~~~~   56 (156)
T PF00504_consen    7 GSVPGDYGFDPLGLSSDP-DFAWYREAELKHGRVAMLAFVGALVQEAGTGF   56 (156)
T ss_dssp             STSTTSTSSSTTTTTTSH-HHHHHHHHHHHHHHHHHHHHHHHHHCHCHSTT
T ss_pred             CCCCCCCCCChhhcccch-hHHHHHHhHHHhhhhhhhhhHHHHHHHHhccC
Confidence            348999999999999777 89999999999999999999999999998874

LHC functions as a light receptor that captures and delivers excitation energy to photosystems I and II with which it is closely associated. Under changing light conditions, the reversible phosphorylation of light harvesting chlorophyll a/b binding proteins (LHCII) represents a system for balancing the excitation energy between the two photosystems []. The N terminus of the chlorophyll A-B binding protein extends into the stroma where it is involved with adhesion of granal membranes and photo-regulated by reversible phosphorylation of its threonine residues []. Both these processes are believed to mediate the distribution of excitation energy between photosystems I and II. This family also includes the photosystem II protein PsbS, which plays a role in energy-dependent quenching that increases thermal dissipation of excess absorbed light energy in the photosystem [].; PDB: 2O01_2 2WSF_2 2WSC_2 3LW5_2 2WSE_2 1RWT_D 2BHW_C 1VCR_A.

>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional

Probab=99.46  E-value=5.6e-14  Score=115.40  Aligned_cols=49  Identities=41%  Similarity=0.651  Sum_probs=44.1

Q ss_pred             CCCCccccCCCC-CChhhhhHHHHHHhhhhhHHHHHhhhhhhhhcccccc
Q 031053           94 PGGPLFNPLGLG-KDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVG  142 (166)
Q Consensus        94 PG~~~fdPlgl~-~~~~~~~~~~~~El~nGRLAMla~~g~~~q~~~tg~g  142 (166)
                      .||++|||+|++ .++++++++|++||||||+||+|++|+++|+.++..|
T Consensus        54 ~Gd~~fDPlgl~~~~~~~~~~~r~~ElkhGR~AMlA~~G~~~~~~~~~pG  103 (209)
T PLN00089         54 TGSKKFDPLGLAEKVEEFLPWFRESELKHGRAAMLAVAGFIAPDFVRIPG  103 (209)
T ss_pred             CCccCcCCccCCCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCC
Confidence            788899999998 4677899999999999999999999999999876554

>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional

Probab=99.24  E-value=4e-12  Score=103.99  Aligned_cols=44  Identities=41%  Similarity=0.780  Sum_probs=39.9

Q ss_pred             CCCCCccccCCCC--CChhhhhHHHHHHhhhhhHHHHHhhhhhhhhc
Q 031053           93 YPGGPLFNPLGLG--KDEKSMKDFKLKEVKNGRLAMLAILGYFVQGL  137 (166)
Q Consensus        93 ~PG~~~fdPlgl~--~~~~~~~~~~~~El~nGRLAMla~~g~~~q~~  137 (166)
                      -|.++ |||+||+  .|+++++++|++||||||+||+|++||++|+.
T Consensus        42 ~p~g~-fDPlgl~~~~~~~~~~~~r~~ElkhGRlAMlA~~G~~~~~~   87 (202)
T PLN00120         42 APLGF-FDPLGLVDDGDQEKFDRLRYVEIKHGRISMLAVVGYLVTEA   87 (202)
T ss_pred             CCCCC-CCCCccCCCCCHHHHHHHHHHHhhcccHHHHhhccceeecc
Confidence            46664 9999997  57899999999999999999999999999996

>PHA02337 putative high light inducible protein

Probab=98.13  E-value=1.8e-06  Score=52.06  Aligned_cols=28  Identities=29%  Similarity=0.192  Sum_probs=25.9

Q ss_pred             HHHhhhhhHHHHHhhhhhhhhccccccc
Q 031053          116 LKEVKNGRLAMLAILGYFVQGLVTGVGP  143 (166)
Q Consensus       116 ~~El~nGRLAMla~~g~~~q~~~tg~gp  143 (166)
                      .+|+-|||+||++++..+..+++||++.
T Consensus         4 ~aE~~NGRlAMiGfv~~~~~e~~tGq~i   31 (35)
T PHA02337          4 EAEIFNGWLAMIGFVAAVGAYATTGQII   31 (35)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHhCCCC
Confidence            5899999999999999999999999864

>PLN00084 photosystem II subunit S (PsbS); Provisional

Probab=97.89  E-value=6.6e-06  Score=66.11  Aligned_cols=39  Identities=36%  Similarity=0.486  Sum_probs=35.5

Q ss_pred             hhHHHHHHhhhhhHHHHHhhhhhhhhccc-cccchhhhHh
Q 031053          111 MKDFKLKEVKNGRLAMLAILGYFVQGLVT-GVGPYQNLLD  149 (166)
Q Consensus       111 ~~~~~~~El~nGRLAMla~~g~~~q~~~t-g~gp~~nl~~  149 (166)
                      .++.|..|+-||||||++|+--++.|++| |+|+++|+..
T Consensus       132 vrEqK~nE~~NGRLAMLGF~~alitE~lTgGqGiL~Ql~~  171 (214)
T PLN00084        132 VREQKPYELFNGRLAMLGFAFAIAGDAVTGGMGPLEQFNG  171 (214)
T ss_pred             HHhccchhhhhhHHHHHHHHHHHHHHHHhCCcchHHHhcc
Confidence            56678889999999999999999999999 9999999853

>PLN00014 light-harvesting-like protein 3; Provisional

Probab=97.70  E-value=1.9e-05  Score=65.96  Aligned_cols=38  Identities=26%  Similarity=0.411  Sum_probs=34.2

Q ss_pred             HHHHHhhhhhHHHHHhhhhhhhhccccccchhhhHhhh
Q 031053          114 FKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHL  151 (166)
Q Consensus       114 ~~~~El~nGRLAMla~~g~~~q~~~tg~gp~~nl~~~~  151 (166)
                      ...+|+-|||+||+||+..++.+.+||+|.++|+..++
T Consensus       159 l~~aE~lNGR~AMiGFvaal~~E~~TG~gll~Qlg~f~  196 (250)
T PLN00014        159 LPEAELLNGRAAMVGFFMAYLVDSLTGVGLVDQMGNFF  196 (250)
T ss_pred             CchhHhhhhHHHHHHHHHHHHHHHHcCCcHHHHHhhhh
Confidence            35689999999999999999999999999999997643

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	166
2wsc_3	276	Improved Model Of Plant Photosystem I Length = 276		2e-76
2o01_3	165	The Structure Of A Plant Photosystem I Supercomplex		5e-66
3lw5_3	172	Improved Model Of Plant Photosystem I Length = 172		2e-64
2o01_4	165	The Structure Of A Plant Photosystem I Supercomplex		5e-20
3lw5_2	176	Improved Model Of Plant Photosystem I Length = 176		3e-19
2o01_2	186	The Structure Of A Plant Photosystem I Supercomplex		5e-19
1rwt_A	232	Crystal Structure Of Spinach Major Light-harvesting		1e-18
2bhw_A	232	Pea Light-Harvesting Complex Ii At 2.5 Angstrom Res		3e-18
1vcr_A	232	An Icosahedral Assembly Of Light-Harvesting Chlorop		3e-18
2wsc_4	251	Improved Model Of Plant Photosystem I Length = 251		5e-18
2wsc_2	269	Improved Model Of Plant Photosystem I Length = 269		5e-18
3lw5_4	166	Improved Model Of Plant Photosystem I Length = 166		1e-17
2wsc_1	241	Improved Model Of Plant Photosystem I Length = 241		6e-14
2o01_1	187	The Structure Of A Plant Photosystem I Supercomplex		6e-14
3lw5_1	170	Improved Model Of Plant Photosystem I Length = 170		2e-12
3pl9_A	243	Crystal Structure Of Spinach Minor Light-Harvesting		7e-09

>pdb|2WSC|3 Chain 3, Improved Model Of Plant Photosystem I Length = 276

Iteration: 1
 Score =  280 bits (717), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 138/166 (83%), Positives = 144/166 (86%)
Query: 1   MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
           MLGAVGAIAPEILGKAGLIPQETAL WF+TG IPPAGTYNYWAD YTLFV EMALMGFAE
Sbjct: 111 MLGAVGAIAPEILGKAGLIPQETALPWFRTGFIPPAGTYNYWADSYTLFVFEMALMGFAE 170
Query: 61  HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVK 120
           HRRFQDWA PGSMG+QYFLG EK LGGSG+PAY            KDEKS+KD KLKEVK
Sbjct: 171 HRRFQDWAKPGSMGKQYFLGLEKGLGGSGEPAYPGGPFFNPLGFGKDEKSLKDLKLKEVK 230
Query: 121 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 166
           NGRLAMLAILGYFVQ LVTGVGPYQNLLDHL DPV+NN+LTSLKFH
Sbjct: 231 NGRLAMLAILGYFVQALVTGVGPYQNLLDHLTDPVHNNILTSLKFH 276

>pdb|2O01|3 Chain 3, The Structure Of A Plant Photosystem I Supercomplex At 3.4 Angstrom Resolution Length = 165

Iteration: 1
 Score =  246 bits (627), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 124/152 (81%), Positives = 129/152 (84%)
Query: 1   MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
           MLGA GAIAPEILGKAGLIP ETAL WFQTGVIPPAGTY YWAD YTLFVLEMALMGFAE
Sbjct: 14  MLGAAGAIAPEILGKAGLIPAETALPWFQTGVIPPAGTYTYWADNYTLFVLEMALMGFAE 73
Query: 61  HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVK 120
           HRR QDW NPGSMG+QYFLG EK L GSG+PAY            KDEKS+K+ KLKEVK
Sbjct: 74  HRRLQDWYNPGSMGKQYFLGLEKGLAGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVK 133
Query: 121 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLA 152
           NGRLAMLAILGYF+QGLVTGVGPYQNLLDHLA
Sbjct: 134 NGRLAMLAILGYFIQGLVTGVGPYQNLLDHLA 165

>pdb|3LW5|3 Chain 3, Improved Model Of Plant Photosystem I Length = 172

Iteration: 1
 Score =  241 bits (614), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 121/146 (82%), Positives = 126/146 (86%)
Query: 1   MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
           MLGAVGAIAPE LGK GLIPQETALAWFQTGVIPPAGTYNYWAD YTLFVLEMALMGFAE
Sbjct: 27  MLGAVGAIAPEYLGKVGLIPQETALAWFQTGVIPPAGTYNYWADNYTLFVLEMALMGFAE 86
Query: 61  HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVK 120
           HRRFQDWA PGSMG+QYFLG EK  GGSG+PAY            KDEKS+K+ KLKEVK
Sbjct: 87  HRRFQDWAKPGSMGKQYFLGLEKGFGGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVK 146
Query: 121 NGRLAMLAILGYFVQGLVTGVGPYQN 146
           NGRLAMLAILGYF+QGLVTGVGPYQN
Sbjct: 147 NGRLAMLAILGYFIQGLVTGVGPYQN 172

>pdb|2O01|4 Chain 4, The Structure Of A Plant Photosystem I Supercomplex At 3.4 Angstrom Resolution Length = 165

Iteration: 1
 Score = 93.6 bits (231), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 60/163 (36%), Positives = 84/163 (51%), Gaps = 16/163 (9%)
Query: 1   MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
           MLG  G + PE+    G+I       W+       AG   Y+A   TLFV+E  L  + E
Sbjct: 19  MLGVAGMLLPEVFTSIGII---NVPKWYA------AGKEEYFASSSTLFVIEFILSHYVE 69
Query: 61  HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVK 120
            RR+QD  NPGS+ +     F++Y   +G+  Y              E      K KE+ 
Sbjct: 70  IRRWQDIKNPGSVNQDPI--FKQYSLPAGEVGYPGGIFNPLNFAPTLEA-----KEKEIA 122
Query: 121 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 163
           NGRLAMLA LG+ +Q  VTG GP+ NLL H++DP +N ++ +L
Sbjct: 123 NGRLAMLAFLGFIIQHNVTGKGPFDNLLQHISDPWHNTIVQTL 165

>pdb|3LW5|2 Chain 2, Improved Model Of Plant Photosystem I Length = 176

Iteration: 1
 Score = 90.9 bits (224), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 57/164 (34%), Positives = 81/164 (49%), Gaps = 12/164 (7%)
Query: 1   MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
           MLGA G   PE L K G++      +W+       AG   Y+ D  TLF++E+  +G+AE
Sbjct: 21  MLGAAGIFIPEFLTKLGIL---NTPSWYT------AGEQEYFTDTTTLFIVELVFIGWAE 71
Query: 61  HRRFQDWANPGSMGRQYFLGFEKYLGGS-GDPAYXXXXXXXXXXXXKDEKSMKDFKLKEV 119
            RR+ D  NPG +         K  G   G P                 + +K+ + KE+
Sbjct: 72  GRRWADILNPGCVNTDPIFPNNKLTGTDVGYPG--GLWFDPLGWGSASPQKLKELRTKEI 129
Query: 120 KNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 163
           KNGRLAMLA++G + Q + TG GP  NL  HLADP +  +  + 
Sbjct: 130 KNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAAF 173

>pdb|2O01|2 Chain 2, The Structure Of A Plant Photosystem I Supercomplex At 3.4 Angstrom Resolution Length = 186

Iteration: 1
 Score = 90.1 bits (222), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 57/155 (36%), Positives = 78/155 (50%), Gaps = 12/155 (7%)
Query: 1   MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
           MLGA G   PE L K G++      +W+       AG   Y+ D  TLF++E+  +G+AE
Sbjct: 41  MLGAAGIFIPEFLTKLGIL---NTPSWYT------AGEQEYFTDTTTLFIVELVFIGWAE 91
Query: 61  HRRFQDWANPGSMGRQYFLGFEKYLGGS-GDPAYXXXXXXXXXXXXKDEKSMKDFKLKEV 119
            RR+ D  NPG +         K  G   G P                 + +K+ + KE+
Sbjct: 92  GRRWADILNPGCVNTDPIFPNNKLTGTDVGYPG--GLWFDPLGWGSASPQKLKELRTKEI 149
Query: 120 KNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADP 154
           KNGRLAMLA++G + Q + TG GP  NL  HLADP
Sbjct: 150 KNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 184

>pdb|1RWT|A Chain A, Crystal Structure Of Spinach Major Light-harvesting Complex At 2.72 Angstrom Resolution Length = 232

Iteration: 1
 Score = 88.6 bits (218), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 62/168 (36%), Positives = 86/168 (51%), Gaps = 28/168 (16%)
Query: 1   MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
           MLGA+G + PE+L + G+   E    WF+ G  I   G  +Y  +P          ++  
Sbjct: 73  MLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWAC 130
Query: 52  EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSM 111
           ++ LMG  E  R       G +G    +    Y GGS DP               D ++ 
Sbjct: 131 QVILMGAVEGYRIAG----GPLGE---VVDPLYPGGSFDP----------LGLADDPEAF 173
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
            + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN 
Sbjct: 174 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNA 221

>pdb|2BHW|A Chain A, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution Length = 232

Iteration: 1
 Score = 87.8 bits (216), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 62/170 (36%), Positives = 88/170 (51%), Gaps = 28/170 (16%)
Query: 1   MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
           MLGA+G++ PE+L + G+   E    WF+ G  I   G  +Y  +P          ++  
Sbjct: 73  MLGALGSVFPELLSRNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWAT 130
Query: 52  EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSM 111
           ++ LMG  E  R       G +G    +    Y GGS DP               D ++ 
Sbjct: 131 QVILMGAVEGYRIAG----GPLGE---VVDPLYPGGSFDP----------LGLADDPEAF 173
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLT 161
            + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN  +
Sbjct: 174 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWS 223

>pdb|1VCR|A Chain A, An Icosahedral Assembly Of Light-Harvesting Chlorophyll AB Protein Complex From Pea Thylakoid Membranes Length = 232

Iteration: 1
 Score = 87.4 bits (215), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 62/170 (36%), Positives = 87/170 (51%), Gaps = 28/170 (16%)
Query: 1   MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
           MLGA+G + PE+L + G+   E    WF+ G  I   G  +Y  +P          ++  
Sbjct: 73  MLGALGCVFPELLSRNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWAT 130
Query: 52  EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSM 111
           ++ LMG  E  R       G +G    +    Y GGS DP               D ++ 
Sbjct: 131 QVILMGAVEGYRIAG----GPLGE---VVDPLYPGGSFDP----------LGLADDPEAF 173
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLT 161
            + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN  +
Sbjct: 174 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWS 223

>pdb|2WSC|4 Chain 4, Improved Model Of Plant Photosystem I Length = 251

Iteration: 1
 Score = 87.0 bits (214), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 59/163 (36%), Positives = 83/163 (50%), Gaps = 17/163 (10%)
Query: 1   MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
           MLG  G + PE+    G+I       W+       AG   Y+A   TLFV+E  L  + E
Sbjct: 103 MLGVAGMLLPEVFTSIGII---NVPKWYA------AGKEEYFASSSTLFVIEFILSHYVE 153
Query: 61  HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVK 120
            RR+QD  NPGS+ +     F++Y   +G+  Y              E      K KE+ 
Sbjct: 154 IRRWQDIKNPGSVNQDPI--FKQYSLPAGEVGYPGGIFNPLNFAPTLEA-----KEKEIA 206
Query: 121 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 163
           NGRL MLA LG+ +Q  VTG GP+ NLL H++DP +N ++ +L
Sbjct: 207 NGRL-MLAFLGFIIQHNVTGKGPFDNLLQHISDPWHNTIVQTL 248

>pdb|2WSC|2 Chain 2, Improved Model Of Plant Photosystem I Length = 269

Iteration: 1
 Score = 86.7 bits (213), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 57/156 (36%), Positives = 78/156 (50%), Gaps = 13/156 (8%)
Query: 1   MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
           MLGA G   PE L K G++      +W+       AG   Y+ D  TLF++E+  +G+AE
Sbjct: 114 MLGAAGIFIPEFLTKLGIL---NTPSWYT------AGEQEYFTDTTTLFIVELVFIGWAE 164
Query: 61  HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXX-XXKDEKSMKDFKLKEV 119
            RR+ D  NPG +         K  G   D  Y                + +K+ + KE+
Sbjct: 165 GRRWADILNPGCVNTDPIFPNNKLTGT--DVGYPGGLWFDPLGWGSASPQKLKELRTKEI 222
Query: 120 KNGRLAMLAILGYFVQGLVTGVGPYQNLL-DHLADP 154
           KNGRLAMLA++G + Q + TG GP  NL   HLADP
Sbjct: 223 KNGRLAMLAVMGAWFQHIYTGTGPIDNLFAAHLADP 258

>pdb|3LW5|4 Chain 4, Improved Model Of Plant Photosystem I Length = 166

Iteration: 1
 Score = 85.5 bits (210), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 58/160 (36%), Positives = 81/160 (50%), Gaps = 17/160 (10%)
Query: 1   MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
           MLG  G + PE+    G+I       W+       AG   Y+A   TLFV+E  L  + E
Sbjct: 23  MLGVAGMLLPEVFTSIGII---NVPKWYA------AGKEEYFASSSTLFVIEFILSHYVE 73
Query: 61  HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVK 120
            RR+QD  NPGS+ +     F++Y   +G+  Y              E      K KE+ 
Sbjct: 74  IRRWQDIKNPGSVNQDPI--FKQYSLPAGEVGYPGGIFNPLNFAPTLEA-----KEKEIA 126
Query: 121 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVL 160
           NGRL MLA LG+ +Q  VTG GP+ NLL H++DP +N ++
Sbjct: 127 NGRL-MLAFLGFIIQHNVTGKGPFDNLLQHISDPWHNTIV 165

>pdb|2WSC|1 Chain 1, Improved Model Of Plant Photosystem I Length = 241

Iteration: 1
 Score = 73.2 bits (178), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 55/166 (33%), Positives = 77/166 (46%), Gaps = 34/166 (20%)
Query: 1   MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPY------TLFVLEMA 54
           ML   G + PE LG    +    A  W       P G   Y  +P       T+  +E  
Sbjct: 95  MLAVPGILVPEALGYGNWV---KAQEWAAL----PGGQATYLGNPVPWGTLPTILAIEFL 147
Query: 55  LMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDF 114
            + F EH+R  +  +P           +KY GG+ DP              KD K +++ 
Sbjct: 148 AIAFVEHQRSME-KDPEK---------KKYPGGAFDP----------LGYSKDPKKLEEL 187
Query: 115 KLKEVKNGRLAMLAILGYFV-QGLVTGVGPYQNLLDHLADPVNNNV 159
           K+KE+KNGRLA+LA +G+ V Q    G GP +NL  HLADP +NN+
Sbjct: 188 KVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 233

>pdb|2O01|1 Chain 1, The Structure Of A Plant Photosystem I Supercomplex At 3.4 Angstrom Resolution Length = 187

Iteration: 1
 Score = 73.2 bits (178), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 55/166 (33%), Positives = 77/166 (46%), Gaps = 34/166 (20%)
Query: 1   MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPY------TLFVLEMA 54
           ML   G + PE LG    +    A  W       P G   Y  +P       T+  +E  
Sbjct: 47  MLAVPGILVPEALGYGNWV---KAQEWAAL----PGGQATYLGNPVPWGTLPTILAIEFL 99
Query: 55  LMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDF 114
            + F EH+R  +  +P           +KY GG+ DP              KD K +++ 
Sbjct: 100 AIAFVEHQRSME-KDPEK---------KKYPGGAFDP----------LGYSKDPKKLEEL 139
Query: 115 KLKEVKNGRLAMLAILGYFV-QGLVTGVGPYQNLLDHLADPVNNNV 159
           K+KE+KNGRLA+LA +G+ V Q    G GP +NL  HLADP +NN+
Sbjct: 140 KVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 185

>pdb|3LW5|1 Chain 1, Improved Model Of Plant Photosystem I Length = 170

Iteration: 1
 Score = 68.2 bits (165), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/161 (32%), Positives = 73/161 (45%), Gaps = 34/161 (21%)
Query: 1   MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPY------TLFVLEMA 54
           ML   G + PE LG    +    A  W       P G   Y  +P       T+  +E  
Sbjct: 35  MLAVPGILVPEALGYGNWV---KAQEWAAL----PGGQATYLGNPVPWGTLPTILAIEFL 87
Query: 55  LMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDF 114
            + F EH+R  +  +P           +KY GG+ DP              KD K +++ 
Sbjct: 88  AIAFVEHQRSME-KDPEK---------KKYPGGAFDP----------LGYSKDPKKLEEL 127
Query: 115 KLKEVKNGRLAMLAILGYFV-QGLVTGVGPYQNLLDHLADP 154
           K+KE+KNGRLA+LA +G+ V Q    G GP +NL  HLADP
Sbjct: 128 KVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADP 168

>pdb|3PL9|A Chain A, Crystal Structure Of Spinach Minor Light-Harvesting Complex Cp29 At 2.80 Angstrom Resolution Length = 243

Iteration: 1
 Score = 56.6 bits (135), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 72/167 (43%), Gaps = 38/167 (22%)
Query: 1   MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPY-----TLFVLEMAL 55
           ML  +GA+  E L         T + W   G +      +Y   P      TL  +E+ +
Sbjct: 104 MLATLGALTVEGL---------TGITWQDAGKVELIEGSSYLGQPLPFSMTTLIWIEVLV 154
Query: 56  MGFAEHRRFQDWANPGSMGRQYFLGFEK--YLGGSGDPAYXXXXXXXXXXXXKDEKSMKD 113
           +G+ E +R  +            L  EK  Y GG+ DP               D +    
Sbjct: 155 IGYIEFQRNAE------------LDTEKRLYPGGTFDP----------LGLASDPEKKPI 192
Query: 114 FKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVL 160
            +L E+K+ RLAM+  LG+ VQ  VTG GP  N + HL+DP++  +L
Sbjct: 193 LQLAEIKHARLAMVGFLGFAVQAAVTGKGPLNNWVTHLSDPLHTTIL 239

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	166
2wsc_3	276	LHCA3, type II chlorophyll A/B binding protein fro	4e-52
2wsc_2	269	LHCA2, type II chlorophyll A/B binding protein fro	3e-33
2wsc_2	269	LHCA2, type II chlorophyll A/B binding protein fro	2e-05
2bhw_A	232	Chlorophyll A-B binding protein AB80; LHC-II, phot	5e-32
2bhw_A	232	Chlorophyll A-B binding protein AB80; LHC-II, phot	6e-05
2wsc_4	251	Chlorophyll A-B binding protein P4, chloroplastic;	8e-32
2wsc_4	251	Chlorophyll A-B binding protein P4, chloroplastic;	5e-07
2wsc_1	241	AT3G54890, LHCA1; photosynthesis, electron transfe	3e-29
2wsc_1	241	AT3G54890, LHCA1; photosynthesis, electron transfe	4e-05
3pl9_A	243	Chlorophyll A-B binding protein; CP29, light-harve	2e-26

>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3* Length = 276

 Score =  166 bits (421), Expect = 4e-52
 Identities = 148/166 (89%), Positives = 154/166 (92%)

Query: 1   MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
           MLGAVGAIAPEILGKAGLIPQETAL WF+TG IPPAGTYNYWAD YTLFV EMALMGFAE
Sbjct: 111 MLGAVGAIAPEILGKAGLIPQETALPWFRTGFIPPAGTYNYWADSYTLFVFEMALMGFAE 170

Query: 61  HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 120
           HRRFQDWA PGSMG+QYFLG EK LGGSG+PAYPGGP FNPLG GKDEKS+KD KLKEVK
Sbjct: 171 HRRFQDWAKPGSMGKQYFLGLEKGLGGSGEPAYPGGPFFNPLGFGKDEKSLKDLKLKEVK 230

Query: 121 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 166
           NGRLAMLAILGYFVQ LVTGVGPYQNLLDHL DPV+NN+LTSLKFH
Sbjct: 231 NGRLAMLAILGYFVQALVTGVGPYQNLLDHLTDPVHNNILTSLKFH 276

>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2* Length = 269

 Score =  117 bits (294), Expect = 3e-33
 Identities = 65/163 (39%), Positives = 83/163 (50%), Gaps = 13/163 (7%)

Query: 1   MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
           MLGA G   PE L K G            T     AG   Y+ D  TLF++E+  +G+AE
Sbjct: 114 MLGAAGIFIPEFLTKLG---------ILNTPSWYTAGEQEYFTDTTTLFIVELVFIGWAE 164

Query: 61  HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGK-DEKSMKDFKLKEV 119
            RR+ D  NPG +         K  G   D  YPGG  F+PLG G    + +K+ + KE+
Sbjct: 165 GRRWADILNPGCVNTDPIFPNNKLTGT--DVGYPGGLWFDPLGWGSASPQKLKELRTKEI 222

Query: 120 KNGRLAMLAILGYFVQGLVTGVGPYQNLL-DHLADPVNNNVLT 161
           KNGRLAMLA++G + Q + TG GP  NL   HLADP       
Sbjct: 223 KNGRLAMLAVMGAWFQHIYTGTGPIDNLFAAHLADPHATIFAA 265

>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2* Length = 269

 Score = 42.8 bits (99), Expect = 2e-05
 Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 5/89 (5%)

Query: 83  KYLGGSGDPAY-----PGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGL 137
            +  GS  P +     PG   F+PLGLG D +S++     E+ + R AML   G F+   
Sbjct: 66  LWFPGSTPPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHSRWAMLGAAGIFIPEF 125

Query: 138 VTGVGPYQNLLDHLADPVNNNVLTSLKFH 166
           +T +G       + A        T+  F 
Sbjct: 126 LTKLGILNTPSWYTAGEQEYFTDTTTLFI 154

>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A* Length = 232

 Score =  113 bits (283), Expect = 5e-32
 Identities = 61/161 (37%), Positives = 86/161 (53%), Gaps = 10/161 (6%)

Query: 1   MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
           MLGA+G++ PE+L + G+   E    WF+ G    +     +    +L   +  L  +A 
Sbjct: 73  MLGALGSVFPELLSRNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWAT 130

Query: 61  HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 120
                       +           LG   DP YPGG  F+PLGL  D ++  + K+KE+K
Sbjct: 131 QVILMGAVEGYRIA-------GGPLGEVVDPLYPGGS-FDPLGLADDPEAFAELKVKELK 182

Query: 121 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLT 161
           NGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN  +
Sbjct: 183 NGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWS 223

>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A* Length = 232

 Score = 40.7 bits (94), Expect = 6e-05
 Identities = 18/76 (23%), Positives = 28/76 (36%)

Query: 71  GSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAIL 130
           G    +Y   F           +PG   ++  GL  D ++    +  EV + R AML  L
Sbjct: 18  GPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGAL 77

Query: 131 GYFVQGLVTGVGPYQN 146
           G     L++  G    
Sbjct: 78  GSVFPELLSRNGVKFG 93

>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4* Length = 251

 Score =  113 bits (283), Expect = 8e-32
 Identities = 63/163 (38%), Positives = 87/163 (53%), Gaps = 17/163 (10%)

Query: 1   MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
           MLG  G + PE+    G                  AG   Y+A   TLFV+E  L  + E
Sbjct: 103 MLGVAGMLLPEVFTSIG---------IINVPKWYAAGKEEYFASSSTLFVIEFILSHYVE 153

Query: 61  HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 120
            RR+QD  NPGS+ +     F++Y   +G+  YPGG +FNPL          + K KE+ 
Sbjct: 154 IRRWQDIKNPGSVNQDPI--FKQYSLPAGEVGYPGG-IFNPLNFAPTL----EAKEKEIA 206

Query: 121 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 163
           NGRL MLA LG+ +Q  VTG GP+ NLL H++DP +N ++ +L
Sbjct: 207 NGRL-MLAFLGFIIQHNVTGKGPFDNLLQHISDPWHNTIVQTL 248

>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4* Length = 251

 Score = 47.0 bits (110), Expect = 5e-07
 Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 5/67 (7%)

Query: 83  KYLGGSGDPAY-----PGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGL 137
           ++L G   P Y     PG   F+PLGL +D ++++ F   E+ NGR AML + G  +  +
Sbjct: 55  EWLPGLASPGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEV 114

Query: 138 VTGVGPY 144
            T +G  
Sbjct: 115 FTSIGII 121

>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1* Length = 241

 Score =  106 bits (265), Expect = 3e-29
 Identities = 51/164 (31%), Positives = 72/164 (43%), Gaps = 22/164 (13%)

Query: 1   MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
           ML   G + PE LG    +  +   A    G     G    W    T+  +E   + F E
Sbjct: 95  MLAVPGILVPEALGYGNWVKAQEWAALPG-GQATYLGNPVPWGTLPTILAIEFLAIAFVE 153

Query: 61  HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 120
           H+R  +                             G  F+PLG  KD K +++ K+KE+K
Sbjct: 154 HQRSMEKDPEKK--------------------KYPGGAFDPLGYSKDPKKLEELKVKEIK 193

Query: 121 NGRLAMLAILGYFV-QGLVTGVGPYQNLLDHLADPVNNNVLTSL 163
           NGRLA+LA +G+ V Q    G GP +NL  HLADP +NN+   +
Sbjct: 194 NGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIV 237

>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1* Length = 241

 Score = 41.2 bits (95), Expect = 4e-05
 Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 4/62 (6%)

Query: 83  KYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVG 142
            YL GS     PG   F+PLGLG+   +++ +K  E+ + R AMLA+ G  V   +    
Sbjct: 56  AYLDGS----APGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGYGN 111

Query: 143 PY 144
             
Sbjct: 112 WV 113

>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea} Length = 243

 Score = 99.4 bits (246), Expect = 2e-26
 Identities = 48/167 (28%), Positives = 72/167 (43%), Gaps = 34/167 (20%)

Query: 1   MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPY-----TLFVLEMAL 55
           ML  +GA+  E L             W   G +      +Y   P      TL  +E+ +
Sbjct: 104 MLATLGALTVEGLTGIT---------WQDAGKVELIEGSSYLGQPLPFSMTTLIWIEVLV 154

Query: 56  MGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFK 115
           +G+ E +R  +                     +    YPGG  F+PLGL  D +     +
Sbjct: 155 IGYIEFQRNAELD-------------------TEKRLYPGGT-FDPLGLASDPEKKPILQ 194

Query: 116 LKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTS 162
           L E+K+ RLAM+  LG+ VQ  VTG GP  N + HL+DP++  +L  
Sbjct: 195 LAEIKHARLAMVGFLGFAVQAAVTGKGPLNNWVTHLSDPLHTTILDR 241

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	166
2wsc_3	276	LHCA3, type II chlorophyll A/B binding protein fro	100.0
2wsc_2	269	LHCA2, type II chlorophyll A/B binding protein fro	100.0
3pl9_A	243	Chlorophyll A-B binding protein; CP29, light-harve	100.0
2wsc_4	251	Chlorophyll A-B binding protein P4, chloroplastic;	100.0
2bhw_A	232	Chlorophyll A-B binding protein AB80; LHC-II, phot	100.0
2wsc_1	241	AT3G54890, LHCA1; photosynthesis, electron transfe	100.0
2bhw_A	232	Chlorophyll A-B binding protein AB80; LHC-II, phot	99.61
2wsc_4	251	Chlorophyll A-B binding protein P4, chloroplastic;	99.58
2wsc_2	269	LHCA2, type II chlorophyll A/B binding protein fro	99.55
3pl9_A	243	Chlorophyll A-B binding protein; CP29, light-harve	99.53
2wsc_1	241	AT3G54890, LHCA1; photosynthesis, electron transfe	99.48
2wsc_3	276	LHCA3, type II chlorophyll A/B binding protein fro	99.4

>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3*

Probab=100.00  E-value=2.5e-44  Score=303.36  Aligned_cols=166  Identities=89%  Similarity=1.493  Sum_probs=122.1

Q ss_pred             CccccchhhhhhhccCCCCCccccccccccCccCCCCccccCCChhHHHHHHHHHhhhhhhhhhccccCCCCCCcccccc
Q 031053            1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLG   80 (166)
Q Consensus         1 MLA~~G~lvpE~l~~~G~~~~~~~~~w~~ag~i~~~g~~~~~~~~~~l~~~q~ll~g~vE~~R~~~~~~pg~~~~~~~~~   80 (166)
                      |||++|+++||++++.|++..+....|++++++|.+|..+||.++.+++++|+++||++|.+|++++.+||+.+.+++++
T Consensus       111 MLa~~G~l~~E~~~~~g~~~~~~p~~w~~~g~ip~aG~~~~~~~~~~l~~~qi~liG~~E~~r~~~~~~pG~~g~~p~~g  190 (276)
T 2wsc_3          111 MLGAVGAIAPEILGKAGLIPQETALPWFRTGFIPPAGTYNYWADSYTLFVFEMALMGFAEHRRFQDWAKPGSMGKQYFLG  190 (276)
T ss_dssp             CCTTTSTTSCSSCSSCCCCCCSSCCSSSSCCCC-----CCCSCCCCSTTHHHHHHTHHHHTTTTTGGGSCCCCCCCCSSC
T ss_pred             hhhHHHHHHHHHhcccccccccCcchhhhhhcccchhHHHHhccchHHHHHHHHHHHHHHHhhhcccccCCccccccccc
Confidence            99999999999999888876444456999999998898899999999999999999999999999999999998877776


Q ss_pred             cccccCCCCCCCCCCCCccccCCCCCChhhhhHHHHHHhhhhhHHHHHhhhhhhhhccccccchhhhHhhhcCCccccee
Q 031053           81 FEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVL  160 (166)
Q Consensus        81 ~~~~~~~~~~~~~PG~~~fdPlgl~~~~~~~~~~~~~El~nGRLAMla~~g~~~q~~~tg~gp~~nl~~~~~~p~~~n~~  160 (166)
                      .++...+..|..||||++|||+||.+|+++++++|++|||||||||+|++|+++|+++||+||++||.+|++||+||||+
T Consensus       191 ~~~~~~~~~d~~yPG~~~fDPlgl~~~~~~~~~~r~~Ei~nGRlAMla~~g~~~~~~~tg~g~~~~l~~HladP~~~n~~  270 (276)
T 2wsc_3          191 LEKGLGGSGEPAYPGGPFFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFVQALVTGVGPYQNLLDHLTDPVHNNIL  270 (276)
T ss_dssp             SCCCCCCCSSCTTTSSSSCCCCCCSSSCC-----CCSHHHHHHHHHHHHHHHHSSCCCCSSCCSCC--------------
T ss_pred             ccccccccccccCCCcccccchhcccccHHHHHHHHhhhcccchHHHHHHHHHHHHHhcCCChHHHHHHhccCcccchhh
Confidence            55544444677899999999999998888899999999999999999999999999999999999999999999999999


Q ss_pred             eccccC
Q 031053          161 TSLKFH  166 (166)
Q Consensus       161 ~~~~~~  166 (166)
                      +++..|
T Consensus       271 ~~~~~~  276 (276)
T 2wsc_3          271 TSLKFH  276 (276)
T ss_dssp             ------
T ss_pred             hhccCC
Confidence            998754

>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2*

Probab=100.00  E-value=2.6e-40  Score=277.96  Aligned_cols=154  Identities=41%  Similarity=0.794  Sum_probs=133.9

Q ss_pred             CccccchhhhhhhccCCCCCccccccccccCccCCCCccccCCChhHHHHHHHHHhhhhhhhhhccccCCCCCCcccccc
Q 031053            1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLG   80 (166)
Q Consensus         1 MLA~~G~lvpE~l~~~G~~~~~~~~~w~~ag~i~~~g~~~~~~~~~~l~~~q~ll~g~vE~~R~~~~~~pg~~~~~~~~~   80 (166)
                      |||++|+++||++++.|+..   .+.|+++|      ...|+.++++++++|+++||++|.+|++++.+||+++.++.+.
T Consensus       114 MLA~~G~l~~E~l~~~G~~~---~p~w~~aG------~~~~~~~~~~l~~~qi~liG~~E~~r~~~~~~pG~~g~~p~f~  184 (269)
T 2wsc_2          114 MLGAAGIFIPEFLTKLGILN---TPSWYTAG------EQEYFTDTTTLFIVELVFIGWAEGRRWADILNPGCVNTDPIFP  184 (269)
T ss_dssp             TTTTHHHHHHHHHCCTTSSS---CCCCCSTT------SSSSCCCTTSHHHHHTTHHHHHHHHHHTTSSCCCCCSSSCCSS
T ss_pred             HHHHHHhHhHHhhccCCccc---Cccccccc------hhhhhcchHHHHHHHHHHHHHHHHHHHhccccCCccccccccc
Confidence            99999999999999888763   35699865      3467878888999999999999999999999999988776554


Q ss_pred             cccccCCCCCCCCCCCCccccCCCC-CChhhhhHHHHHHhhhhhHHHHHhhhhhhhhccccccchhhhH-hhhcCCcccc
Q 031053           81 FEKYLGGSGDPAYPGGPLFNPLGLG-KDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLL-DHLADPVNNN  158 (166)
Q Consensus        81 ~~~~~~~~~~~~~PG~~~fdPlgl~-~~~~~~~~~~~~El~nGRLAMla~~g~~~q~~~tg~gp~~nl~-~~~~~p~~~n  158 (166)
                      ...  .+..|..||||++|||+|+. .|+++++++|.+|||||||||+|++|+++|+.+||+||++||. +|++|| |||
T Consensus       185 ~~~--~~~~d~~~PG~~~fDPlgl~~~~~e~~~~~~~~Ei~nGRlAMla~~g~~~~~~~tg~g~l~~l~~~HladP-~~n  261 (269)
T 2wsc_2          185 NNK--LTGTDVGYPGGLWFDPLGWGSASPQKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAAHLADP-HAT  261 (269)
T ss_dssp             SCC--SSTTSCSCTTCSSCCCSSSSSSCCCSCTTSTTTTHHHHHHHHTTTSSSCHHHHHTTTCSSCCCSCCCCCCS-CCC
T ss_pred             ccc--ccccccCCCCCcccCccccCcccHHHHHHHHHhhcccchHHHHHHHHHHHHHHhcCCChHHHHHHHHhcCc-ccc
Confidence            221  12246789999999999998 5788899999999999999999999999999999999999999 999999 999


Q ss_pred             eeeccccC
Q 031053          159 VLTSLKFH  166 (166)
Q Consensus       159 ~~~~~~~~  166 (166)
                      |+++++.|
T Consensus       262 ~~~~~~~~  269 (269)
T 2wsc_2          262 IFAAFTPK  269 (269)
T ss_dssp             CCSSSCCC
T ss_pred             hhhhccCC
Confidence            99998754

>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea}

Probab=100.00  E-value=1.1e-39  Score=270.19  Aligned_cols=134  Identities=36%  Similarity=0.679  Sum_probs=114.3

Q ss_pred             CccccchhhhhhhccCCCCCccccccccccCccCCCCccccCCCh-----hHHHHHHHHHhhhhhhhhhccccCCCCCCc
Q 031053            1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADP-----YTLFVLEMALMGFAEHRRFQDWANPGSMGR   75 (166)
Q Consensus         1 MLA~~G~lvpE~l~~~G~~~~~~~~~w~~ag~i~~~g~~~~~~~~-----~~l~~~q~ll~g~vE~~R~~~~~~pg~~~~   75 (166)
                      |||++|+|+||+++         +..|+++|++...+...|++.+     ++++++|+++||++|.+|+++.. +     
T Consensus       104 MLAvlG~lvpE~l~---------g~~W~~aG~~~~~~g~~y~g~p~~~~i~~l~~~qv~lmG~~E~~R~~~~~-~-----  168 (243)
T 3pl9_A          104 MLATLGALTVEGLT---------GITWQDAGKVELIEGSSYLGQPLPFSMTTLIWIEVLVIGYIEFQRNAELD-T-----  168 (243)
T ss_dssp             HHHHHHHHHHHHHH---------SCCTTTHHHHHHHSCEEETTEEECCCHHHHHHHHHHHHHHHHHHHHSCCC-T-----
T ss_pred             HHHHHHHHhHHhhc---------CcccccccccccccccccccCccchhhHHHHHHHHHHHHHHHHHhhcccC-C-----
Confidence            99999999999985         2368887764322234555433     47899999999999999998631 1     


Q ss_pred             ccccccccccCCCCCCCCCCCCccccCCCCCChhhhhHHHHHHhhhhhHHHHHhhhhhhhhccccccchhhhHhhhcCCc
Q 031053           76 QYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPV  155 (166)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~PG~~~fdPlgl~~~~~~~~~~~~~El~nGRLAMla~~g~~~q~~~tg~gp~~nl~~~~~~p~  155 (166)
                                   .+..||||+ |||+|+++|+++++++|++|||||||||+|++|+++|+++||+||++||.+|++||+
T Consensus       169 -------------~~~~~PG~~-FDPLGl~~d~e~~~~~r~~ElknGRlAMla~~g~~~q~~vtG~Gpl~~l~~HladP~  234 (243)
T 3pl9_A          169 -------------EKRLYPGGT-FDPLGLASDPEKKPILQLAEIKHARLAMVGFLGFAVQAAVTGKGPLNNWVTHLSDPL  234 (243)
T ss_dssp             -------------TTTTCCCGG-GCTTCTTCSTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHCSG
T ss_pred             -------------ccccCCCcc-hhhccccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhcCCChHHHHHHHhcCcc
Confidence                         234699998 999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccceeecc
Q 031053          156 NNNVLTSL  163 (166)
Q Consensus       156 ~~n~~~~~  163 (166)
                      |+||++++
T Consensus       235 ~~ni~~~~  242 (243)
T 3pl9_A          235 HTTILDRF  242 (243)
T ss_dssp             GGSTTTTT
T ss_pred             hhhhhhhc
Confidence            99999986

>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4*

Probab=100.00  E-value=2.4e-39  Score=270.05  Aligned_cols=148  Identities=42%  Similarity=0.766  Sum_probs=123.3

Q ss_pred             CccccchhhhhhhccCCCCCccccccccccCccCCCCccccCCChhHHHHHHHHHhhhhhhhhhccccCCCCCCcccccc
Q 031053            1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLG   80 (166)
Q Consensus         1 MLA~~G~lvpE~l~~~G~~~~~~~~~w~~ag~i~~~g~~~~~~~~~~l~~~q~ll~g~vE~~R~~~~~~pg~~~~~~~~~   80 (166)
                      |||++|+++||+++..|++.   .+.|+++|      ..+|+.++++++++|+++||++|.+|++++.+||+.+.++.+.
T Consensus       103 Mla~~G~~~~e~~~~~g~~~---~p~w~~aG------~~~~~~~~~~l~~~qi~liG~~E~~r~~~~~~pG~~g~~p~f~  173 (251)
T 2wsc_4          103 MLGVAGMLLPEVFTSIGIIN---VPKWYAAG------KEEYFASSSTLFVIEFILSHYVEIRRWQDIKNPGSVNQDPIFK  173 (251)
T ss_dssp             HHHHTTSSTTSSSCCSCSSC---CCCCSCCC------SSSCSSCSSCTTTTHHHHHHTTTHHHHHHHSSCCCTTCCSSSC
T ss_pred             HHHHHHHHHHHHhcCCCccC---Cccccccc------hHhhhccchHHHHHHHHHHHHHHHHHhhcccCCCccccccccc
Confidence            99999999999999888763   34699865      3457877788889999999999999999999999988766654


Q ss_pred             cccccCCCCCCCCCCCCccccCCCCCChhhhhHHHHHHhhhhhHHHHHhhhhhhhhccccccchhhhHhhhcCCccccee
Q 031053           81 FEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVL  160 (166)
Q Consensus        81 ~~~~~~~~~~~~~PG~~~fdPlgl~~~~~~~~~~~~~El~nGRLAMla~~g~~~q~~~tg~gp~~nl~~~~~~p~~~n~~  160 (166)
                      ..+.  +..|..||||+ |||+++.+    ++++|+|||||||| |+|++||++|+++||++|++||.+|++||+|+||+
T Consensus       174 ~~~~--~~~d~~yPGg~-FDPLgl~~----~~~~k~kELkNGRL-MlAilGf~vQe~vTG~gPl~nL~~hladP~~~n~~  245 (251)
T 2wsc_4          174 QYSL--PAGEVGYPGGI-FNPLNFAP----TLEAKEKEIANGRL-MLAFLGFIIQHNVTGKGPFDNLLQHISDPWHNTIV  245 (251)
T ss_dssp             SSSS--CCHHHHSSCCT-TCCCCCCS----SSSCTTHHHHHHHT-TTTHHHHHHHHTTSCCCCCCCTTTTTTCCCCCCSC
T ss_pred             cccc--ccccccCCCCc-cCccchhH----HHHHHHHHHhcchh-HHHHHHHHHHHHhcCccHHHHHHHHccChhhhhhh
Confidence            3221  11345799997 99999975    56789999999999 99999999999999999999999999999999999


Q ss_pred             ecccc
Q 031053          161 TSLKF  165 (166)
Q Consensus       161 ~~~~~  165 (166)
                      +++..
T Consensus       246 ~~~~~  250 (251)
T 2wsc_4          246 QTLGG  250 (251)
T ss_dssp             C----
T ss_pred             hhhcC
Confidence            98753

>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*

Probab=100.00  E-value=6.7e-37  Score=252.79  Aligned_cols=145  Identities=46%  Similarity=0.866  Sum_probs=120.1

Q ss_pred             CccccchhhhhhhccCCCCCccccccccccCc-cCCCCccccCCCh--------hHHHHHHHHHhhhhhhhhhccccCCC
Q 031053            1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPG   71 (166)
Q Consensus         1 MLA~~G~lvpE~l~~~G~~~~~~~~~w~~ag~-i~~~g~~~~~~~~--------~~l~~~q~ll~g~vE~~R~~~~~~pg   71 (166)
                      |||++|+++||++++.|+..+  ...|+++|. +...+.++|++.|        .+++++|+++||++|.+|+++-  | 
T Consensus        73 MLA~~G~lv~E~l~~~G~~~~--~~~w~~ag~~~~~~~~~~~~~~P~~~~~q~i~~~~~~q~~~~g~~E~~r~~~g--~-  147 (232)
T 2bhw_A           73 MLGALGSVFPELLSRNGVKFG--EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGG--P-  147 (232)
T ss_dssp             HHHHHHHHHHHHHHTTTCCCS--CCSGGGSGGGGGSTTCEEGGGCTTSEEECCHHHHHHHHHHHHHHHHHHHHHEE--T-
T ss_pred             HHhhhhhhhHHHhccCCcCCc--ccccccccchhccccchhcccCcchhhHHHHHHHHHHHHHHHHHHHHHhhccC--c-
Confidence            999999999999998887553  457998874 3333334454433        4677889999999999998751  1 


Q ss_pred             CCCcccccccccccCCCCCCCCCCCCccccCCCCCChhhhhHHHHHHhhhhhHHHHHhhhhhhhhccccccchhhhHhhh
Q 031053           72 SMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHL  151 (166)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~PG~~~fdPlgl~~~~~~~~~~~~~El~nGRLAMla~~g~~~q~~~tg~gp~~nl~~~~  151 (166)
                       .+            ...|..||||+ |||+|+.+|+++++++|.+|||||||||+|++|+++|+.+||+||++||.+|+
T Consensus       148 -~g------------~~~d~~~Pg~~-fdPlgl~~~~~~~~~~~~~E~~nGRlAM~~~~g~~~~~~~tg~g~~~~l~~~~  213 (232)
T 2bhw_A          148 -LG------------EVVDPLYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHL  213 (232)
T ss_dssp             -TE------------ECSSSSCCCTT-SCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSHHHHHHHH
T ss_pred             -cc------------ccccccCCCcc-cccchhccchHHHHHHHHhhhhccchHHHHHHHHHHHHHhcCCChHHHHHHHh
Confidence             11            01345699997 99999999999999999999999999999999999999999999999999999


Q ss_pred             cCCcccceeeccc
Q 031053          152 ADPVNNNVLTSLK  164 (166)
Q Consensus       152 ~~p~~~n~~~~~~  164 (166)
                      +||+|+||+++..
T Consensus       214 adP~~~n~~~~~~  226 (232)
T 2bhw_A          214 ADPVNNNAWSYAT  226 (232)
T ss_dssp             HCTTTSSGGGGTT
T ss_pred             cChHHhHHHHHHH
Confidence            9999999999865

>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1*

Probab=100.00  E-value=4.4e-34  Score=236.95  Aligned_cols=137  Identities=42%  Similarity=0.784  Sum_probs=100.9

Q ss_pred             CccccchhhhhhhccCCCCCccccccccccCccCCCCcccc------CCChhHHHHHHHHHhhhhhhhhhccccCCCCCC
Q 031053            1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNY------WADPYTLFVLEMALMGFAEHRRFQDWANPGSMG   74 (166)
Q Consensus         1 MLA~~G~lvpE~l~~~G~~~~~~~~~w~~ag~i~~~g~~~~------~~~~~~l~~~q~ll~g~vE~~R~~~~~~pg~~~   74 (166)
                      |||++|+++||+++..+...   ...|.+   ++ .|...|      |...++++++|+++||++|.+|+.+. .+    
T Consensus        95 Mla~~G~~~~e~~~~~~~~~---a~~~~~---~~-~g~a~~~~~~~~~~~~~~i~~iq~l~ig~~E~~r~~~~-~~----  162 (241)
T 2wsc_1           95 MLAVPGILVPEALGYGNWVK---AQEWAA---LP-GGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEK-DP----  162 (241)
T ss_dssp             TTTSTTSSSTTCCCCC--------CCCCS---CS-SCSSCCSSSCSSSSSHHHHHHHHHHHTHHHHHHHTSCC-SS----
T ss_pred             HhhhhcccchhhccCCcccc---ccchhc---cC-CcchhhhcCcchHHHHHHHHHHHHHHHHHHHHHHHhcc-CC----
Confidence            99999999999986532111   112322   11 232333      33446788999999999999998642 11    


Q ss_pred             cccccccccccCCCCCCCCCCCCccccCCCCCChhhhhHHHHHHhhhhhHHHHHhhhhhhhh-ccccccchhhhHhhhcC
Q 031053           75 RQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQG-LVTGVGPYQNLLDHLAD  153 (166)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~PG~~~fdPlgl~~~~~~~~~~~~~El~nGRLAMla~~g~~~q~-~~tg~gp~~nl~~~~~~  153 (166)
                                    .+..|||| .|||+|+.+|+++++++|.+|||||||||+|++|+++|+ .+||+||++||.+|++|
T Consensus       163 --------------~~~~yPgg-~fDPlgl~~~~~~~~~~r~~E~~nGRlAM~a~~g~~~~~~~~tG~gpl~~l~~h~ad  227 (241)
T 2wsc_1          163 --------------EKKKYPGG-AFDPLGYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLAD  227 (241)
T ss_dssp             --------------CCSSSCSC-CSCSSSCSCSSSSCCCSCTTHHHHHHHHHHHHHSGGGGGSSSCCSCCCCCSSCSCCC
T ss_pred             --------------CCCCCCCC-cccccccccchhHHHHHHHhhcccccHHHHHHHHHHHhhhhcCCCchHHHHHHHhcC
Confidence                          23469999 599999999999999999999999999999999999999 58999999999999999


Q ss_pred             Ccccceeeccc
Q 031053          154 PVNNNVLTSLK  164 (166)
Q Consensus       154 p~~~n~~~~~~  164 (166)
                      |+||||++++.
T Consensus       228 P~~~n~~~~~~  238 (241)
T 2wsc_1          228 PWHNNIGDIVI  238 (241)
T ss_dssp             SCC--------
T ss_pred             ccccceeeeec
Confidence            99999999875

>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*

Probab=99.61  E-value=3.5e-16  Score=128.99  Aligned_cols=51  Identities=27%  Similarity=0.423  Sum_probs=47.6

Q ss_pred             CCCCCCCCccccCCCCCChhhhhHHHHHHhhhhhHHHHHhhhhhhhhcccc
Q 031053           90 DPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTG  140 (166)
Q Consensus        90 ~~~~PG~~~fdPlgl~~~~~~~~~~~~~El~nGRLAMla~~g~~~q~~~tg  140 (166)
                      |..+|||++|||+||++|+|+++++|++||||||+||+|++|+++|++++.
T Consensus        37 dG~~pGD~GFDPLGLs~d~e~~~r~ReaELkHGR~AMLA~~G~lv~E~l~~   87 (232)
T 2bhw_A           37 TGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGSVFPELLSR   87 (232)
T ss_dssp             CSCSTTCCSCCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCcCCCCCCCCCCcCCCCHHHHHHHHHHHHhccchHHHhhhhhhhHHHhcc
Confidence            445999999999999999999999999999999999999999999998754

>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4*

Probab=99.58  E-value=3e-16  Score=130.69  Aligned_cols=55  Identities=35%  Similarity=0.625  Sum_probs=39.3

Q ss_pred             CCCCCCCCccccCCCCCChhhhhHHHHHHhhhhhHHHHHhhhhhhhhccccccch
Q 031053           90 DPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPY  144 (166)
Q Consensus        90 ~~~~PG~~~fdPlgl~~~~~~~~~~~~~El~nGRLAMla~~g~~~q~~~tg~gp~  144 (166)
                      +..+|||++|||+||++|+|+++++|.+||+|||+||+|++|+++|+++++.|++
T Consensus        67 ~g~~pGd~gfDPlGl~~d~e~~~~~r~aEl~hGR~AMla~~G~~~~e~~~~~g~~  121 (251)
T 2wsc_4           67 TGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGII  121 (251)
T ss_dssp             --------------CCCSCCCTTTTHHHHHHHTHHHHHHHTTSSTTSSSCCSCSS
T ss_pred             CCCcCCCCCCCccccCCChHHHHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcc
Confidence            3459999999999999999999999999999999999999999999999988776

>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2*

Probab=99.55  E-value=4.8e-16  Score=130.56  Aligned_cols=55  Identities=36%  Similarity=0.570  Sum_probs=36.2

Q ss_pred             CCCCCCCCccccCCCCCChhhhhHHHHHHhhhhhHHHHHhhhhhhhhccccccch
Q 031053           90 DPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPY  144 (166)
Q Consensus        90 ~~~~PG~~~fdPlgl~~~~~~~~~~~~~El~nGRLAMla~~g~~~q~~~tg~gp~  144 (166)
                      +..+|||++|||+||++|+|+++++|++||||||+||+|++|+++|+++++.|.+
T Consensus        78 ~G~~pGD~GfDPlGL~~d~e~~~~~r~aElkHGR~AMLA~~G~l~~E~l~~~G~~  132 (269)
T 2wsc_2           78 DGSLPGDFGFDPLGLGSDPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGIL  132 (269)
T ss_dssp             ----------------CCCSCCTTTHHHHHHTHHHHTTTTHHHHHHHHHCCTTSS
T ss_pred             cCcCCCCCCCCccccCCCHHHHHHHHHHHHhcchHHHHHHHHhHhHHhhccCCcc
Confidence            3458999999999999999999999999999999999999999999998876544

>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea}

Probab=99.53  E-value=1.6e-15  Score=125.62  Aligned_cols=51  Identities=39%  Similarity=0.602  Sum_probs=28.7

Q ss_pred             CCCCCCCCccccCCCCCChh-------------------------------------------hhhHHHHHHhhhhhHHH
Q 031053           90 DPAYPGGPLFNPLGLGKDEK-------------------------------------------SMKDFKLKEVKNGRLAM  126 (166)
Q Consensus        90 ~~~~PG~~~fdPlgl~~~~~-------------------------------------------~~~~~~~~El~nGRLAM  126 (166)
                      |..+|||++|||+||+++||                                           .++++|++||+|||+||
T Consensus        25 dGslpGD~GfDPlgL~~~pe~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~r~ReaELkHGRwAM  104 (243)
T 3pl9_A           25 DGSLVGDYGFDPFGLGKPAEYLQYDYDGLDQNLAKNLAGDIIGTRTESADVKSTSLQPYSEVFGLQRFRECELIHGRWAM  104 (243)
T ss_dssp             ---------------------------------------------------------------CCHHHHHHHHHHHHHHH
T ss_pred             cCCCCCcCCCCccccCCChhhhccccccchhhhhccccccccccccccccccccccccccchhhhHHHHHhhhhcchhHH
Confidence            34599999999999999887                                           37899999999999999


Q ss_pred             HHhhhhhhhhcccc
Q 031053          127 LAILGYFVQGLVTG  140 (166)
Q Consensus       127 la~~g~~~q~~~tg  140 (166)
                      +|++|++++|+++|
T Consensus       105 LAvlG~lvpE~l~g  118 (243)
T 3pl9_A          105 LATLGALTVEGLTG  118 (243)
T ss_dssp             HHHHHHHHHHHHHS
T ss_pred             HHHHHHHhHHhhcC
Confidence            99999999999865

>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1*

Probab=99.48  E-value=6.1e-15  Score=122.16  Aligned_cols=50  Identities=36%  Similarity=0.560  Sum_probs=46.0

Q ss_pred             CCCCCCCCccccCCCCCChhhhhHHHHHHhhhhhHHHHHhhhhhhhhccc
Q 031053           90 DPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVT  139 (166)
Q Consensus        90 ~~~~PG~~~fdPlgl~~~~~~~~~~~~~El~nGRLAMla~~g~~~q~~~t  139 (166)
                      +..+|||++|||+||++|+|+++++|++||||||+||+|++|+++|++++
T Consensus        59 ~G~~pgd~gfDPlgl~~~~~~~~~~r~~El~hgR~AMla~~G~~~~e~~~  108 (241)
T 2wsc_1           59 DGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALG  108 (241)
T ss_dssp             --CTTSSCCCSSTTTTTTTTHHHHSHHHHHHHHHHHTTTSTTSSSTTCCC
T ss_pred             cCCCCCcCCcCccccCCCHHHHHHHHHHHHhhchhHHhhhhcccchhhcc
Confidence            34589999999999999999999999999999999999999999999864

>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3*

Probab=99.40  E-value=1.7e-14  Score=121.59  Aligned_cols=54  Identities=35%  Similarity=0.548  Sum_probs=35.6

Q ss_pred             CCCCCCCCccccCCCCCChhhh------hHHHHHHhhhhhHHHHHhhhhhhhhccccccch
Q 031053           90 DPAYPGGPLFNPLGLGKDEKSM------KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPY  144 (166)
Q Consensus        90 ~~~~PG~~~fdPlgl~~~~~~~------~~~~~~El~nGRLAMla~~g~~~q~~~tg~gp~  144 (166)
                      +..+|||++|||+|| +|++++      +++|.+||+|||+||+|++|++++|++++.|.+
T Consensus        70 ~G~~pGD~GfDPlGl-~d~~~~~~~~~~~~~r~aEl~hGR~AMLa~~G~l~~E~~~~~g~~  129 (276)
T 2wsc_3           70 DGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEIINGRYAMLGAVGAIAPEILGKAGLI  129 (276)
T ss_dssp             ----------------CCCCCCCCSSSTTHHHHHHHHHHTTSCCTTTSTTSCSSCSSCCCC
T ss_pred             cCcCCCccCCCcccc-CChHhhcchhhHHHHHHHHhhcccchhhhHHHHHHHHHhcccccc
Confidence            345899999999999 688989      999999999999999999999999999876643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	166
d1rwta_	218	f.43.1.1 (A:) Chlorophyll a-b binding protein {Spi	6e-33
d1rwta_	218	f.43.1.1 (A:) Chlorophyll a-b binding protein {Spi	1e-07

>d1rwta_ f.43.1.1 (A:) Chlorophyll a-b binding protein {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 218

class: Membrane and cell surface proteins and peptides
fold: Chlorophyll a-b binding protein
superfamily: Chlorophyll a-b binding protein
family: Chlorophyll a-b binding protein
domain: Chlorophyll a-b binding protein
species: Spinach (Spinacia oleracea) [TaxId: 3562]

 Score =  114 bits (286), Expect = 6e-33
 Identities = 64/169 (37%), Positives = 87/169 (51%), Gaps = 26/169 (15%)

Query: 1   MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADP--------YTLFVLE 52
           MLGA+G + PE+L + G+   E       +  I   G  +Y  +P          ++  +
Sbjct: 60  MLGALGCVFPELLARNGVKFGEAVWFKAGS-QIFSEGGLDYLGNPSLVHAQSILAIWACQ 118

Query: 53  MALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMK 112
           + LMG  E  R                     LG   DP YPGG  F+PLGL  D ++  
Sbjct: 119 VILMGAVEGYRIA----------------GGPLGEVVDPLYPGGS-FDPLGLADDPEAFA 161

Query: 113 DFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLT 161
           + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN   
Sbjct: 162 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWN 210

>d1rwta_ f.43.1.1 (A:) Chlorophyll a-b binding protein {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 218

class: Membrane and cell surface proteins and peptides
fold: Chlorophyll a-b binding protein
superfamily: Chlorophyll a-b binding protein
family: Chlorophyll a-b binding protein
domain: Chlorophyll a-b binding protein
species: Spinach (Spinacia oleracea) [TaxId: 3562]

 Score = 47.4 bits (112), Expect = 1e-07
 Identities = 18/69 (26%), Positives = 26/69 (37%), Gaps = 4/69 (5%)

Query: 83  KYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVG 142
            YL G     +PG   ++  GL  D ++    +  EV + R AML  LG     L+   G
Sbjct: 21  SYLTGE----FPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNG 76

Query: 143 PYQNLLDHL 151
                    
Sbjct: 77  VKFGEAVWF 85

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	166
d1rwta_	218	Chlorophyll a-b binding protein {Spinach (Spinacia	100.0
d1rwta_	218	Chlorophyll a-b binding protein {Spinach (Spinacia	99.67

>d1rwta_ f.43.1.1 (A:) Chlorophyll a-b binding protein {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Membrane and cell surface proteins and peptides
fold: Chlorophyll a-b binding protein
superfamily: Chlorophyll a-b binding protein
family: Chlorophyll a-b binding protein
domain: Chlorophyll a-b binding protein
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=100.00  E-value=3.1e-35  Score=238.30  Aligned_cols=145  Identities=44%  Similarity=0.798  Sum_probs=112.4

Q ss_pred             CccccchhhhhhhccCCCCCccccccccccCc-cCCCCccccC--------CChhHHHHHHHHHhhhhhhhhhccccCCC
Q 031053            1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYW--------ADPYTLFVLEMALMGFAEHRRFQDWANPG   71 (166)
Q Consensus         1 MLA~~G~lvpE~l~~~G~~~~~~~~~w~~ag~-i~~~g~~~~~--------~~~~~l~~~q~ll~g~vE~~R~~~~~~pg   71 (166)
                      |||++|+++||++++.+....  ...|+++.. ++..+...++        ......+++++.+++.+|..|......  
T Consensus        60 MLA~vG~~~~E~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~--  135 (218)
T d1rwta_          60 MLGALGCVFPELLARNGVKFG--EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPL--  135 (218)
T ss_dssp             HHHHHHHHHHHHHHTTTCCCS--CCSHHHHGGGGGSTTCBCGGGCTTSCCBCCHHHHHHHHHHHHHHHHHHHHHCBTT--
T ss_pred             HhhhcceeehhhhccCCCCCC--CcccccccccccCcchhhhhcCchHHHHHHHHHHHHHHHHHHhhhhhhcccCCCc--
Confidence            999999999999998765432  346776543 2222222222        222345556677899999988763211  


Q ss_pred             CCCcccccccccccCCCCCCCCCCCCccccCCCCCChhhhhHHHHHHhhhhhHHHHHhhhhhhhhccccccchhhhHhhh
Q 031053           72 SMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHL  151 (166)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~PG~~~fdPlgl~~~~~~~~~~~~~El~nGRLAMla~~g~~~q~~~tg~gp~~nl~~~~  151 (166)
                                    ....+..|||+ +|||+++.+++|+++++|+||||||||||+|++||++|+++||++|++||.+|+
T Consensus       136 --------------~~~~~~~~~~g-~fdPlg~~~~~e~~~~~k~kElkNGRLAMlAi~G~~~qe~vtG~gp~~nl~~h~  200 (218)
T d1rwta_         136 --------------GEVVDPLYPGG-SFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHL  200 (218)
T ss_dssp             --------------BCCSSSSCCCG-GGCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHHH
T ss_pred             --------------ccccCCCCCCC-CccccccCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhcCCCHHHHHHHHh
Confidence                          11145568877 799999999999999999999999999999999999999999999999999999


Q ss_pred             cCCcccceeeccc
Q 031053          152 ADPVNNNVLTSLK  164 (166)
Q Consensus       152 ~~p~~~n~~~~~~  164 (166)
                      +||+|+||++.+.
T Consensus       201 ~~P~~~n~~~~~~  213 (218)
T d1rwta_         201 ADPVNNNAWNFAT  213 (218)
T ss_dssp             HCTTTSSGGGGTT
T ss_pred             cCchhhhHHHHHh
Confidence            9999999997765

>d1rwta_ f.43.1.1 (A:) Chlorophyll a-b binding protein {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Membrane and cell surface proteins and peptides
fold: Chlorophyll a-b binding protein
superfamily: Chlorophyll a-b binding protein
family: Chlorophyll a-b binding protein
domain: Chlorophyll a-b binding protein
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=99.67  E-value=3.8e-17  Score=131.17  Aligned_cols=52  Identities=27%  Similarity=0.385  Sum_probs=48.1

Q ss_pred             CCCCCCCCccccCCCCCChhhhhHHHHHHhhhhhHHHHHhhhhhhhhccccc
Q 031053           90 DPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGV  141 (166)
Q Consensus        90 ~~~~PG~~~fdPlgl~~~~~~~~~~~~~El~nGRLAMla~~g~~~q~~~tg~  141 (166)
                      |..+|||++|||+||++|+++++++|++||||||+||+|++|+++||+++..
T Consensus        24 dGs~pGD~GFDPLgls~d~~~~~~~ReaELKHGR~AMLA~vG~~~~E~~~~~   75 (218)
T d1rwta_          24 TGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN   75 (218)
T ss_dssp             CSCSTTCCSCCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CCCCCCCCCcCCcccCCCHHHHHHHHHHHHhhceehHhhhcceeehhhhccC
Confidence            4568999999999999999999999999999999999999999999987544