Citrus Sinensis ID: 031110

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-----
Protein Sequence
MASLRNCGSFYKYGANSFDGVSALPLLLHMRGVISKSLYKKEASLFPRKGSKKLISDRARFIIPRSSGSSNSNGSDSSDQTETPFGYTRKDVLLIGVGVTVIGYGLKSGLELFGVDPLQAGNVVEVIVVLGLTLGWVSTYIFRVSNKEMTYAQQLRDYEDKVMQV
Secondary Structure (PSIPRED)
cccccccccccccccccccccccHHHHHHHHcccHHHHHccccccccccccccccccccEEEccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHEEEEEEEEcccccHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHcccccHHHHHHHHHHHHHcccHHHHHccccccEccccccccccccccEEcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
maslrncgsfykygansfdgvsaLPLLLHMRGVISKSLYKKeaslfprkgskklISDRarfiiprssgssnsngsdssdqtetpfgytrkdvLLIGVGVTVIGYGLksglelfgvdplqagnVVEVIVVLGLTLGWVSTYIFRVSNKEMTYAQQLRDYEDKVMQV
Flexible Loop (DISEMBL)
MASLRNCGSFYKYGANSFDGVSALPLLLHMRGVISKSLykkeaslfprkgskklisdrarfiiprssgssnsngsdssdQTETPFGYTRKDVLLIGVGVTVIGYGLKSGLELFGVDPLQAGNVVEVIVVLGLTLGWVSTYIFrvsnkemtyaqqlrdyedkvmqv
Low Complexity Region (SEG)
MASLRNCGSFYKYGANSFDGVSALPLLLHMRGVISKSLYKKEASLFPRKGSKKLISDRARFIIPRssgssnsngsdssdQTETPFGYTRKDvlligvgvtvigyglKSGLELFGVDPLQAGNVVEVIVVLGLTLGWVSTYIFRVSNKEMTYAQQLRDYEDKVMQV
Disordered region (IsUnstruct)
*****NCGSFYKYGANSFDGVSALPLLLHMRGVISKSLYKKEASL***************************************FGYTRKDVLLIGVGVTVIGYGLKSGLELFGVDPLQAGNVVEVIVVLGLTLGWVSTYIFRVSNKEMTYA*************
Disordered Region (DISOPRED)
*****N*GSFYKYGANSFDGVSALPLLLHMRGVIS**************************************************GYTRKDVLLIGVGVTVIGYGLKSGLELFGVDPLQAGNVVEVIVVLGLTLGWVSTYIFRVSNKEMTYAQQLRDYE*KVMQV
Disordered Region (DISEMBL)
MASLRNCGSFYKYGANSFDGVSALPLLLHMRGVISKSLYKKEASLFPRKGSKKLISDRARFIIPRS****************TPFGYTRKDVLLIGVGVTVIGYGLKSGLELFGVDPLQAGNVVEVIVVLGLTLGWVSTYIFRVSNKEMTYAQQLRDYEDKVMQV
Disordered Region (DISPRO)
**SLRNCGSFYKYGANSFDGVSALPLLLHMRGVISKSLYKKEAS*F************************************TPFGYTRKDVLLIGVGVTVIGYGLKSGLELFGVDPLQAGNVVEVIVVLGLTLGWVSTYIFRVSNKEMTYAQQLRDYEDKVMQV
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MASLRNCGSFYKYGANSFDGVSALPLLLHMRGVISKSLYKKEASLFPRKGSKKLISDRARFIIPRSSGSSNSNGSDSSDQTETPFGYTRKDVLLIGVGVTVIGYGLKSGLELFGVDPLQAGNVVEVIVVLGLTLGWVSTYIFRVSNKEMTYAQQLRDYEDKVMQV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	165
225456193	218	PREDICTED: uncharacterized protein LOC10	0.987	0.747	0.653	1e-43
297734347	210	unnamed protein product [Vitis vinifera]	0.987	0.776	0.653	1e-43
118488661	204	unknown [Populus trichocarpa]	0.927	0.75	0.606	6e-38
125528076	209	hypothetical protein OsI_04123 [Oryza sa	0.581	0.459	0.718	3e-36
115440557	209	Os01g0805200 [Oryza sativa Japonica Grou	0.581	0.459	0.718	3e-36
242059007	200	hypothetical protein SORBIDRAFT_03g03741	0.727	0.6	0.608	1e-35
18401689	190	uncharacterized protein [Arabidopsis tha	0.763	0.663	0.605	3e-35
21554118	190	unknown [Arabidopsis thaliana]	0.606	0.526	0.722	5e-35
297834704	190	hypothetical protein ARALYDRAFT_898147 [	0.666	0.578	0.645	5e-35
9294497	130	unnamed protein product [Arabidopsis tha	0.606	0.769	0.722	6e-35

>gi|225456193|ref|XP_002278927.1| PREDICTED: uncharacterized protein LOC100245848 [Vitis vinifera]

 Score =  181 bits (458), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 117/179 (65%), Positives = 135/179 (75%), Gaps = 16/179 (8%)

Query: 1   MASLR----NCGSFYKYGANSFDGVSALPLLLH--------MRG-VISKSLYKKEASLFP 47
           MASL     NC  F + G+ S  GVSALPLL          MRG +IS+S Y KE S FP
Sbjct: 9   MASLPLKSPNCSIFCERGSISIMGVSALPLLQQRVRAVGGLMRGHIISQSAYTKETSTFP 68

Query: 48  RKGSKKLISDRARFIIPRSSGSSNSNG--SDSSDQTETPFGYTRKDVLLIGVGVTVIGYG 105
           RKGS  +I  +  F  PRSSGSSNS+G   DS++Q + PFGY RKDVLLIGVGVTV+G G
Sbjct: 69  RKGSNSMIPKKLVFT-PRSSGSSNSDGSKDDSTNQDKVPFGYNRKDVLLIGVGVTVLGIG 127

Query: 106 LKSGLELFGVDPLQAGNVVEVIVVLGLTLGWVSTYIFRVSNKEMTYAQQLRDYEDKVMQ 164
           LKSGLE  GVDPLQAGNVV++++VLGLT+GW+STYIFRVSNKEMTYAQQLRDYE+KVMQ
Sbjct: 128 LKSGLEFVGVDPLQAGNVVQLVLVLGLTIGWISTYIFRVSNKEMTYAQQLRDYENKVMQ 186

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297734347|emb|CBI15594.3| unnamed protein product [Vitis vinifera]

 Score =  181 bits (458), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 117/179 (65%), Positives = 135/179 (75%), Gaps = 16/179 (8%)

Query: 1   MASLR----NCGSFYKYGANSFDGVSALPLLLH--------MRG-VISKSLYKKEASLFP 47
           MASL     NC  F + G+ S  GVSALPLL          MRG +IS+S Y KE S FP
Sbjct: 1   MASLPLKSPNCSIFCERGSISIMGVSALPLLQQRVRAVGGLMRGSIISQSAYTKETSTFP 60

Query: 48  RKGSKKLISDRARFIIPRSSGSSNSNG--SDSSDQTETPFGYTRKDVLLIGVGVTVIGYG 105
           RKGS  +I  +  F  PRSSGSSNS+G   DS++Q + PFGY RKDVLLIGVGVTV+G G
Sbjct: 61  RKGSNSMIPKKLVFT-PRSSGSSNSDGSKDDSTNQDKVPFGYNRKDVLLIGVGVTVLGIG 119

Query: 106 LKSGLELFGVDPLQAGNVVEVIVVLGLTLGWVSTYIFRVSNKEMTYAQQLRDYEDKVMQ 164
           LKSGLE  GVDPLQAGNVV++++VLGLT+GW+STYIFRVSNKEMTYAQQLRDYE+KVMQ
Sbjct: 120 LKSGLEFVGVDPLQAGNVVQLVLVLGLTIGWISTYIFRVSNKEMTYAQQLRDYENKVMQ 178

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118488661|gb|ABK96142.1| unknown [Populus trichocarpa]

 Score =  162 bits (409), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 100/165 (60%), Positives = 124/165 (75%), Gaps = 12/165 (7%)

Query: 6   NCGSFYKYGANSFDGVSALPLL-----LHMRG-VISKSLYKKEASLFPRKGSKKLISDRA 59
           NC      GA SF G SALP +       MRG +I +SLY+KE   FPRKG   ++S + 
Sbjct: 14  NCSILRNNGATSFVGFSALPFMQLRAGAFMRGRLIPQSLYRKEKFCFPRKGLGSMMSKKV 73

Query: 60  RFIIPRSSGSSNSNGSDSSDQTETPFGYTRKDVLLIGVGVTVIGYGLKSGLELFGVDPLQ 119
            F    ++ SS+ +GS  SDQ +TPFGY RKDVLLIG+GVT++G GL+SGLE  GVDPLQ
Sbjct: 74  TF----TTRSSSEDGS--SDQGKTPFGYNRKDVLLIGLGVTLLGIGLESGLEYAGVDPLQ 127

Query: 120 AGNVVEVIVVLGLTLGWVSTYIFRVSNKEMTYAQQLRDYEDKVMQ 164
           AGNVV++++VLGLT+GW+STYIFRVSNKEMTYAQQLRDYE+KVM+
Sbjct: 128 AGNVVQLVLVLGLTVGWISTYIFRVSNKEMTYAQQLRDYENKVME 172

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|125528076|gb|EAY76190.1| hypothetical protein OsI_04123 [Oryza sativa Indica Group]

 Score =  156 bits (395), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 69/96 (71%), Positives = 89/96 (92%)

Query: 69  SSNSNGSDSSDQTETPFGYTRKDVLLIGVGVTVIGYGLKSGLELFGVDPLQAGNVVEVIV 128
           SS+S+ ++S+ + +TPFGYTRKDVLLIGVGVT++GYGLK GLEL GVDPLQAGN V++I+
Sbjct: 68  SSSSDETNSTTEEKTPFGYTRKDVLLIGVGVTLLGYGLKYGLELVGVDPLQAGNAVQLII 127

Query: 129 VLGLTLGWVSTYIFRVSNKEMTYAQQLRDYEDKVMQ 164
           VLG+T+GW+STY+FRV+NK+MTYAQQLRDYE +VM+
Sbjct: 128 VLGMTVGWISTYMFRVANKDMTYAQQLRDYEKQVME 163

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115440557|ref|NP_001044558.1| Os01g0805200 [Oryza sativa Japonica Group] gi|20804576|dbj|BAB92268.1| unknown protein [Oryza sativa Japonica Group] gi|113534089|dbj|BAF06472.1| Os01g0805200 [Oryza sativa Japonica Group] gi|125572357|gb|EAZ13872.1| hypothetical protein OsJ_03796 [Oryza sativa Japonica Group]

 Score =  156 bits (395), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 69/96 (71%), Positives = 89/96 (92%)

Query: 69  SSNSNGSDSSDQTETPFGYTRKDVLLIGVGVTVIGYGLKSGLELFGVDPLQAGNVVEVIV 128
           SS+S+ ++S+ + +TPFGYTRKDVLLIGVGVT++GYGLK GLEL GVDPLQAGN V++I+
Sbjct: 68  SSSSDETNSTTEEKTPFGYTRKDVLLIGVGVTLLGYGLKYGLELVGVDPLQAGNAVQLII 127

Query: 129 VLGLTLGWVSTYIFRVSNKEMTYAQQLRDYEDKVMQ 164
           VLG+T+GW+STY+FRV+NK+MTYAQQLRDYE +VM+
Sbjct: 128 VLGMTVGWISTYMFRVANKDMTYAQQLRDYEKQVME 163

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242059007|ref|XP_002458649.1| hypothetical protein SORBIDRAFT_03g037410 [Sorghum bicolor] gi|241930624|gb|EES03769.1| hypothetical protein SORBIDRAFT_03g037410 [Sorghum bicolor]

 Score =  154 bits (390), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 73/120 (60%), Positives = 91/120 (75%)

Query: 45  LFPRKGSKKLISDRARFIIPRSSGSSNSNGSDSSDQTETPFGYTRKDVLLIGVGVTVIGY 104
           L P  G  + +  R RF    S   S+++ S S  Q + PFGYTRKDVLLIG+GVT  G 
Sbjct: 41  LPPPNGLLRSVRQRRRFAARSSISESSTDDSQSPKQEKAPFGYTRKDVLLIGLGVTAFGV 100

Query: 105 GLKSGLELFGVDPLQAGNVVEVIVVLGLTLGWVSTYIFRVSNKEMTYAQQLRDYEDKVMQ 164
           GLK GLEL GVDPLQAGNVV+++VVLG+T+GW+STY+FRV+NK+MTYA QLRDYE +VM+
Sbjct: 101 GLKYGLELLGVDPLQAGNVVQLLVVLGMTVGWISTYMFRVANKDMTYAHQLRDYEKQVME 160

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18401689|ref|NP_566593.1| uncharacterized protein [Arabidopsis thaliana] gi|14517430|gb|AAK62605.1| AT3g17930/MEB5_15 [Arabidopsis thaliana] gi|20147323|gb|AAM10375.1| AT3g17930/MEB5_15 [Arabidopsis thaliana] gi|332642505|gb|AEE76026.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  152 bits (385), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 83/137 (60%), Positives = 97/137 (70%), Gaps = 11/137 (8%)

Query: 32  GVISKSLYKKEASLFP---RKGSKKLISDRARFIIPRSSGSSNSNGSDSSDQTET-PFGY 87
           G   K LY+ E         KG K+    R R    R S +S     DS+ +T+T PFGY
Sbjct: 35  GAAKKVLYRFEGHRLSSSVEKGEKQ----RMRC---RVSSNSTETEDDSATKTKTTPFGY 87

Query: 88  TRKDVLLIGVGVTVIGYGLKSGLELFGVDPLQAGNVVEVIVVLGLTLGWVSTYIFRVSNK 147
           TRKDV+LIGVGVT +G GL+SGLE  GVDPLQAGN V++I+VLGLTLGW+STYIFRV NK
Sbjct: 88  TRKDVILIGVGVTALGIGLESGLEYVGVDPLQAGNAVQLILVLGLTLGWISTYIFRVGNK 147

Query: 148 EMTYAQQLRDYEDKVMQ 164
           EMTYAQQLRDYE +VMQ
Sbjct: 148 EMTYAQQLRDYESQVMQ 164

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21554118|gb|AAM63198.1| unknown [Arabidopsis thaliana]

 Score =  152 bits (384), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 73/101 (72%), Positives = 85/101 (84%), Gaps = 1/101 (0%)

Query: 65  RSSGSSNSNGSDSSDQTET-PFGYTRKDVLLIGVGVTVIGYGLKSGLELFGVDPLQAGNV 123
           R S +S     DS+ +T+T PFGYTRKDV+LIGVGVT +G GL+SGLE  GVDPLQAGN 
Sbjct: 64  RVSSNSTETEDDSATKTKTTPFGYTRKDVILIGVGVTALGIGLESGLEYVGVDPLQAGNA 123

Query: 124 VEVIVVLGLTLGWVSTYIFRVSNKEMTYAQQLRDYEDKVMQ 164
           V++I+VLGLTLGW+STYIFRV NKEMTYAQQLRDYE +VMQ
Sbjct: 124 VQLILVLGLTLGWISTYIFRVGNKEMTYAQQLRDYESQVMQ 164

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297834704|ref|XP_002885234.1| hypothetical protein ARALYDRAFT_898147 [Arabidopsis lyrata subsp. lyrata] gi|297331074|gb|EFH61493.1| hypothetical protein ARALYDRAFT_898147 [Arabidopsis lyrata subsp. lyrata]

 Score =  152 bits (383), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 71/110 (64%), Positives = 86/110 (78%)

Query: 55  ISDRARFIIPRSSGSSNSNGSDSSDQTETPFGYTRKDVLLIGVGVTVIGYGLKSGLELFG 114
           + ++ R     SS S+ +    ++    TPFGYTRKDV+LIGVGVT +G GL+SGLE  G
Sbjct: 55  VREKQRMRCRVSSNSTETEDDSATKTKTTPFGYTRKDVILIGVGVTALGIGLESGLEYVG 114

Query: 115 VDPLQAGNVVEVIVVLGLTLGWVSTYIFRVSNKEMTYAQQLRDYEDKVMQ 164
           VDPLQAGN V++I+VLGLTLGW+STYIFRV NKEMTYAQQLRDYE +VMQ
Sbjct: 115 VDPLQAGNAVQLILVLGLTLGWISTYIFRVGNKEMTYAQQLRDYESQVMQ 164

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|9294497|dbj|BAB02716.1| unnamed protein product [Arabidopsis thaliana]

 Score =  152 bits (383), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 73/101 (72%), Positives = 85/101 (84%), Gaps = 1/101 (0%)

Query: 65  RSSGSSNSNGSDSSDQTET-PFGYTRKDVLLIGVGVTVIGYGLKSGLELFGVDPLQAGNV 123
           R S +S     DS+ +T+T PFGYTRKDV+LIGVGVT +G GL+SGLE  GVDPLQAGN 
Sbjct: 4   RVSSNSTETEDDSATKTKTTPFGYTRKDVILIGVGVTALGIGLESGLEYVGVDPLQAGNA 63

Query: 124 VEVIVVLGLTLGWVSTYIFRVSNKEMTYAQQLRDYEDKVMQ 164
           V++I+VLGLTLGW+STYIFRV NKEMTYAQQLRDYE +VMQ
Sbjct: 64  VQLILVLGLTLGWISTYIFRVGNKEMTYAQQLRDYESQVMQ 104

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	165
TAIR|locus:2088540	190	DAC "AT3G17930" [Arabidopsis t	0.763	0.663	0.503	1.8e-25

TAIR|locus:2088540 DAC "AT3G17930" [Arabidopsis thaliana (taxid:3702)]

 Score = 289 (106.8 bits), Expect = 1.8e-25, P = 1.8e-25
 Identities = 69/137 (50%), Positives = 79/137 (57%)

Query:    32 GVISKSLYKKEA---SLFPRKGSKKLISDRARFIIPRXXXXXXXXXXXXXXQTET-PFGY 87
             G   K LY+ E    S    KG K+    R R    R              +T+T PFGY
Sbjct:    35 GAAKKVLYRFEGHRLSSSVEKGEKQ----RMRC---RVSSNSTETEDDSATKTKTTPFGY 87

Query:    88 TRKDXXXXXXXXXXXXXXXKSGLELFGVDPLQAGNVVEVIVVLGLTLGWVSTYIFRVSNK 147
             TRKD               +SGLE  GVDPLQAGN V++I+VLGLTLGW+STYIFRV NK
Sbjct:    88 TRKDVILIGVGVTALGIGLESGLEYVGVDPLQAGNAVQLILVLGLTLGWISTYIFRVGNK 147

Query:   148 EMTYAQQLRDYEDKVMQ 164
             EMTYAQQLRDYE +VMQ
Sbjct:   148 EMTYAQQLRDYESQVMQ 164


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.138   0.396    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      165       136   0.00091  102 3  11 22  0.40    31
                                                     30  0.45    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  564 (60 KB)
  Total size of DFA:  118 KB (2077 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  9.83u 0.13s 9.96t   Elapsed:  00:00:00
  Total cpu time:  9.83u 0.13s 9.96t   Elapsed:  00:00:00
  Start:  Fri May 10 11:26:50 2013   End:  Fri May 10 11:26:50 2013

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0034660 "ncRNA metabolic process" evidence=RCA

GO:0043085 "positive regulation of catalytic activity" evidence=RCA

GO:0010190 "cytochrome b6f complex assembly" evidence=IMP

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	eugene3.00150423	SubName- Full=Putative uncharacterized protein; (206 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	eugene3.00130190	SubName- Full=Putative uncharacterized protein; (339 aa)			•	•					0.592
	eugene3.00090150	hypothetical protein (129 aa)			•	•					0.588
	gw1.I.6006.1	hypothetical protein (200 aa)			•	•					0.587
	gw1.XIII.355.1	hypothetical protein (158 aa)			•	•					0.586
	gw1.70.142.1	hypothetical protein (191 aa)			•	•					0.565
	eugene3.00160848	hypothetical protein (215 aa)			•	•					0.564
	fgenesh4_pm.C_LG_II001205	RecName- Full=Photosystem II reaction center psb28 protein; (115 aa)			•	•					0.558
	estExt_Genewise1_v1.C_LG_II4195	SubName- Full=Putative uncharacterized protein; (140 aa)			•	•					0.552
	gw1.IV.4064.1	hypothetical protein (225 aa)			•	•					0.551
	gw1.123.192.1	SubName- Full=Putative uncharacterized protein; (218 aa)			•	•					0.549

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	165
pfam11460	104	pfam11460, DUF3007, Protein of unknown function (D	2e-30

>gnl|CDD|221117 pfam11460, DUF3007, Protein of unknown function (DUF3007)

 Score =  105 bits (265), Expect = 2e-30
 Identities = 35/79 (44%), Positives = 50/79 (63%), Gaps = 1/79 (1%)

Query: 87  YTRKDVLLIGVGVTVIGYGLKSGLELFGVDPLQAGNVVEVIVVLGLTLGWVSTYIFRVSN 146
            TR DVLLIG+GV ++G     GL+  G+D L AG   + ++VLG+ +GW  +Y+FRV  
Sbjct: 1   MTRIDVLLIGLGVFLLGGLGYGGLQAAGLDGLSAGIASQALLVLGV-VGWTGSYLFRVVT 59

Query: 147 KEMTYAQQLRDYEDKVMQV 165
            +MTY QQ RDY +    +
Sbjct: 60  GKMTYMQQRRDYREAYDAL 78

This is a family of uncharacterized proteins found in bacteria and eukaryotes. Length = 104

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	165
PF11460	104	DUF3007: Protein of unknown function (DUF3007); In	100.0
PF12576	141	DUF3754: Protein of unknown function (DUF3754); In	90.32

>PF11460 DUF3007: Protein of unknown function (DUF3007); InterPro: IPR021562 This is a family of uncharacterised proteins found in bacteria and eukaryotes

Probab=100.00  E-value=2.3e-40  Score=251.23  Aligned_cols=75  Identities=53%  Similarity=0.872  Sum_probs=74.4

Q ss_pred             ccchhhhhhhHHHHHHHHHHHHHHHHhCCCcccchhHHHHHHhhhhhhheeeeeeeeeecCCccHHHHHHHHHHhh
Q 031110           87 YTRKDVLLIGVGVTVIGYGLKSGLELFGVDPLQAGNVVEVIVVLGLTLGWVSTYIFRVSNKEMTYAQQLRDYEDKV  162 (165)
Q Consensus        87 MtR~DVI~IGlgvfl~Gg~lY~gLq~~GlD~~~AGiwsQ~lLVlGlvVgWv~SYLfRV~tk~MTY~qQ~kdYE~AV  162 (165)
                      |||+|||+||+++|++|+++|++||++|+|+++||||||++||+|+ |+|++||+|||+||||||||||||||+||
T Consensus         1 MtR~dvl~Iglgv~~~Gg~~Y~~l~~~G~d~~~AGi~sq~~lv~gl-vgW~~sYlfRV~t~~MTy~~Q~k~Ye~a~   75 (104)
T PF11460_consen    1 MTRIDVLLIGLGVFLLGGLLYGGLQAAGLDSLSAGIWSQALLVLGL-VGWVSSYLFRVVTGKMTYMQQRKDYEEAV   75 (104)
T ss_pred             CcccceeeecHHHHHHHHHHHHHHHHcCCCchhhhHHHHHHHHHHH-HHHHhHHHhhhccCCCcHHHHHHHHHHHH
Confidence            8999999999999999999999999999999999999999999988 99999999999999999999999999999

>PF12576 DUF3754: Protein of unknown function (DUF3754); InterPro: IPR022227 This domain family is found in bacteria, archaea and eukaryotes, and is typically between 135 and 166 amino acids in length

Probab=90.32  E-value=0.2  Score=38.98  Aligned_cols=71  Identities=15%  Similarity=0.116  Sum_probs=43.6

Q ss_pred             ccccchhhhhhhHHHHHHHHHHHHH-HHHhCCCcccchhHHHHHHhhhhhhheeeeeeeeeecCCccHHHHHHHHHHhhh
Q 031110           85 FGYTRKDVLLIGVGVTVIGYGLKSG-LELFGVDPLQAGNVVEVIVVLGLTLGWVSTYIFRVSNKEMTYAQQLRDYEDKVM  163 (165)
Q Consensus        85 FgMtR~DVI~IGlgvfl~Gg~lY~g-Lq~~GlD~~~AGiwsQ~lLVlGlvVgWv~SYLfRV~tk~MTY~qQ~kdYE~AVm  163 (165)
                      =.||-.|-+.+++.+.+.|+....- .....+.......+.-+.+     ++=+++|.+|+.+   +|.+|+.+|+..+-
T Consensus        57 v~~~~~D~~~l~~~~vvg~v~~~~~~~~~~~~~~~~~~~~~~~~~-----l~~~~~~~~r~~~---~~~~~~~ry~~~l~  128 (141)
T PF12576_consen   57 VRMRPFDRVKLGVSAVVGGVAVFVKLVGMSLLLLSDIFLILILSL-----LSALGGYAFRQYT---GYKNNRARYQLLLT  128 (141)
T ss_pred             CCcCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence            4789999999888777766554443 2222222222222222222     2334678899985   89999999997653

There is a single completely conserved residue P that may be functionally important.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00