Citrus Sinensis ID: 031121

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-----
Protein Sequence
MALCKRVVKLVADSGVRVTKSQGFNLNYSNTIGYRQISQLVKSNGKRAFLVDTLQLVRGLEAQGVPSKQAEAITAAITEVLNDSLENVAHTFVSKGEMQKTEMIQEANLSKFKSEVQSSQEHHFSMLQRETEKLRSDIEKMRSELRYEIDKVTAGQRLDLNLERG
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHcccccEEEEcccccccccccccccccccEcEccccccEEEEcHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEcccc
Coil and Loop (DISEMBL)
MALCKRVVKLVADSGvrvtksqgfnlnysntIGYRQISQLVKSNGKRAFLVDTLQLVRGleaqgvpskQAEAITAAITEVLNDSLENVAHTFVSKGEMQKTEMIQEANLSKFKSEVQSSQEHHFSMLQRETEKLRSDIEKMRSELRYEIDKVTAGQRLDLNLERG
Flexible Loop (DISEMBL)
MALCKRVVKLvadsgvrvtksqgfnlnysntIGYRQISQLVKSNGKRAFLVDTLQLVRGLEAQGVPSKQAEAITAAITEVLNDSLENVAHTFVSKGEMQKTEMIQEANLSKFKSEVQSSQEHHFSMLQRETEKLRSDIEKMRSELryeidkvtagqrldlnlerg
Low Complexity Region (SEG)
MALCKRVVKLVADSGVRVTKSQGFNLNYSNTIGYRQISQLVKSNGKRAFLVDTLQLVRGLEAQGVPSKQAEAITAAITEVLNDSLENVAHTFVSKGEMQKTEMIQEANLSKFKSEVQSSQEHHFSMLQRETEKLRSDIEKMRSELRYEIDKVTAGQRLDLNLERG
Disordered region (IsUnstruct)
**LCKRVVKLVADSGVRVTKSQGFNLNYSNTIGYRQISQLVKSNGKRAFLVDTLQLVRGLEAQGVPSKQAEAITAAITEVLNDSLENVAHTFV************************************************************************
Disordered Region (DISOPRED)
***********************************************AFLVDTLQLVRGLEAQ*VPSKQAEAITAAITEVLNDSLENVAHTFV**G**Q***MIQEANLSK************************SDIEKMRSELRYEIDKVTAGQRLDLNLE**
Disordered Region (DISEMBL)
MALCKRVVKLVADSGVRVTKSQGFNLNYSNTIGYRQISQLVKSNGKRAFLVDTLQLVRGLEAQGVPSKQAEAITAAITEVLNDSLENVAHTFVSKGEMQKTEMIQEANLSK*************SMLQRETEKLRSDIEKMRSELRYEIDKVTAGQRLDLNLERG
Disordered Region (DISPRO)
*ALCKRVVKLVADSGVRVTKSQGFNLNYSNTIGYRQISQLVKSNGKRAFLVDTLQLVRGLEAQGVPSKQAEAITAAITEVLNDSLENVAHTFVSKGEMQKTEMIQEANLSKFKSEVQSSQEHHFSMLQRETEKLRSDIEKMRSELRYEIDKVTAGQRLDLNL***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MALCKRVVKLVADSGVRVTKSQGFNLNYSNTIGYRQISQLVKSNGKRAFLVDTLQLVRGLEAQGVPSKQAEAITAAITEVLNDSLENVAHTFVSKGEMQKTEMIQEANLSKFKSEVQSSQEHHxxxxxxxxxxxxxxxxxxxxxLRYEIDKVTAGQRLDLNLERG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	165	2.2.26 [Sep-21-2011]
Q6DJ87	267	Coiled-coil domain-contai	yes	no	0.878	0.543	0.295	9e-11
Q9GZT6	254	Coiled-coil domain-contai	yes	no	0.727	0.472	0.291	3e-09
O14042	216	Protein fmp32, mitochondr	yes	no	0.751	0.574	0.271	1e-08
Q0P4J6	262	Mitochondrial calcium uni	no	no	0.884	0.557	0.275	1e-08
Q4V897	256	Coiled-coil domain-contai	yes	no	0.727	0.468	0.291	5e-08
P43557	207	Protein FMP32, mitochondr	yes	no	0.587	0.468	0.298	5e-08
Q8C3X2	256	Coiled-coil domain-contai	yes	no	0.727	0.468	0.275	7e-08
Q96AQ8	359	Mitochondrial calcium uni	no	no	0.739	0.339	0.286	3e-07
Q9CXD6	340	Mitochondrial calcium uni	no	no	0.703	0.341	0.283	3e-05
Q10073	211	Uncharacterized CCDC90 fa	no	no	0.654	0.511	0.268	5e-05

>sp|Q6DJ87|CC90B_XENTR Coiled-coil domain-containing protein 90B, mitochondrial OS=Xenopus tropicalis GN=ccdc90b PE=2 SV=2

 Score = 66.2 bits (160), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 78/149 (52%), Gaps = 4/149 (2%)

Query: 19  TKSQGFNLNYSNTIGY--RQISQLVKSNGKRAFLVDTLQLVRGLEAQGVPSKQAEAITAA 76
           T  +GF  + +   GY  RQ+   +    +R    DT  LVR LE  G    QAE I +A
Sbjct: 42  TWKKGFATSAALPAGYDVRQVE--ITPLEQRKLTFDTHALVRELETHGFDKVQAETIVSA 99

Query: 77  ITEVLNDSLENVAHTFVSKGEMQKTEMIQEANLSKFKSEVQSSQEHHFSMLQRETEKLRS 136
           +  + N S++ V    V++ + + T     A+L   + ++   ++  F+ L+ E EK++ 
Sbjct: 100 LATLTNASIDTVYRDMVTRAQQEITVQQIMAHLDSIRKDMVILEKSEFATLRAENEKMKI 159

Query: 137 DIEKMRSELRYEIDKVTAGQRLDLNLERG 165
           ++E +R  L  E ++++A  +LD+NLER 
Sbjct: 160 ELEHVRQHLLNETNRISADAKLDMNLERS 188

Xenopus tropicalis (taxid: 8364)

>sp|Q9GZT6|CC90B_HUMAN Coiled-coil domain-containing protein 90B, mitochondrial OS=Homo sapiens GN=CCDC90B PE=1 SV=2

 Score = 60.8 bits (146), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 68/120 (56%)

Query: 46  KRAFLVDTLQLVRGLEAQGVPSKQAEAITAAITEVLNDSLENVAHTFVSKGEMQKTEMIQ 105
           +R    DT  LV+ LE  G    QAE I +A+T + N SL+ +    V++ + + T    
Sbjct: 56  QRKLTFDTHALVQDLETHGFDKTQAETIVSALTALSNVSLDTIYKEMVTQAQQEITVQQL 115

Query: 106 EANLSKFKSEVQSSQEHHFSMLQRETEKLRSDIEKMRSELRYEIDKVTAGQRLDLNLERG 165
            A+L   + ++   ++  F+ L+ E EK++ ++++++ +L +E  ++ A  +LD+NLER 
Sbjct: 116 MAHLDAIRKDMVILEKSEFANLRAENEKMKIELDQVKQQLMHETSRIRADNKLDINLERS 175

Homo sapiens (taxid: 9606)

>sp|O14042|FMP32_SCHPO Protein fmp32, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=fmp32 PE=3 SV=1

 Score = 59.3 bits (142), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 70/129 (54%), Gaps = 5/129 (3%)

Query: 41  VKSNGKRAFL-----VDTLQLVRGLEAQGVPSKQAEAITAAITEVLNDSLENVAHTFVSK 95
           V+S G   F       ++L+ VR L+  G+  K++E +   I+ V +D  E ++   V+K
Sbjct: 26  VRSLGLNGFYRKYHGFNSLRFVRVLQEAGIDDKKSETLMRLISNVYSDMHEKISDFSVTK 85

Query: 96  GEMQKTEMIQEANLSKFKSEVQSSQEHHFSMLQRETEKLRSDIEKMRSELRYEIDKVTAG 155
            +  +    Q+ + +  +SE+QS +      L  + E+L SD+E++++  R +++  T+ 
Sbjct: 86  EQQDRVMYQQKVDFAHLRSELQSIERQEMVALHSQVEQLFSDVERLKTSFRDQLNNSTSE 145

Query: 156 QRLDLNLER 164
            RL LN++R
Sbjct: 146 ARLQLNIDR 154

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q0P4J6|MCUR1_XENTR Mitochondrial calcium uniporter regulator 1 OS=Xenopus tropicalis GN=ccdc90a PE=2 SV=1

 Score = 59.3 bits (142), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 87/149 (58%), Gaps = 3/149 (2%)

Query: 17  RVTKSQGFNLNYSNTIGYRQISQLVKSNGKRAFLVDTLQLVRGLEAQGVPSKQAEAITAA 76
           RVT  + FN+  ++T+ Y    + + ++  + +  DT  +V+ LEA G  ++Q+E + +A
Sbjct: 36  RVTCFRDFNI-ITSTMQYNLDKRNIYTSVGKHYFFDTHAVVQLLEANGFSAEQSEIVVSA 94

Query: 77  ITEVLNDSLENVAHTFVSKGEMQKTEMIQEANL-SKFKSEVQSSQEHHFSMLQRETEKLR 135
           + ++LN ++ N+ H  +   E Q+  + Q  +L +  K ++   ++  FS L+ + EK++
Sbjct: 95  LVKILNVNM-NLIHKDMVTKEQQEISLQQVMSLIASVKKDMIILEKSEFSALRTQNEKVK 153

Query: 136 SDIEKMRSELRYEIDKVTAGQRLDLNLER 164
            ++++++ +L   I KV A  +LD NLE+
Sbjct: 154 IELQQLKKQLNDSIVKVRASNKLDFNLEK 182

Xenopus tropicalis (taxid: 8364)

>sp|Q4V897|CC90B_RAT Coiled-coil domain-containing protein 90B, mitochondrial OS=Rattus norvegicus GN=Ccdc90b PE=2 SV=1

 Score = 57.0 bits (136), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 66/120 (55%)

Query: 46  KRAFLVDTLQLVRGLEAQGVPSKQAEAITAAITEVLNDSLENVAHTFVSKGEMQKTEMIQ 105
           +R    DT  LV+ LE  G    QA+ I + ++ + N SL+ V    V+K + + T    
Sbjct: 56  QRKLTFDTHALVQDLETHGFDKGQAQTIVSVLSTLSNVSLDTVYKEMVTKAQQEITIQQL 115

Query: 106 EANLSKFKSEVQSSQEHHFSMLQRETEKLRSDIEKMRSELRYEIDKVTAGQRLDLNLERG 165
            A+L   + ++   ++  F+ L+ E EK++ ++++++ +L  E  ++ A  RLD+NLER 
Sbjct: 116 MAHLDSIRKDMVILEKSEFANLRAENEKMKIELDQVKQQLINETSRIRADNRLDINLERS 175

Rattus norvegicus (taxid: 10116)

>sp|P43557|FMP32_YEAST Protein FMP32, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=FMP32 PE=1 SV=1

 Score = 57.0 bits (136), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 56/97 (57%)

Query: 69  QAEAITAAITEVLNDSLENVAHTFVSKGEMQKTEMIQEANLSKFKSEVQSSQEHHFSMLQ 128
           QA  I   +T+ +   + +V+     + ++ +    Q  + +K + ++ S+    F  +Q
Sbjct: 50  QATTIVEIMTDAIRGGVNHVSQDLAKREKLTQLSYQQRVDFAKLRDQLLSADRSEFHNIQ 109

Query: 129 RETEKLRSDIEKMRSELRYEIDKVTAGQRLDLNLERG 165
            E E +++D+EK+R++LR EI K  AG +LDL+LE+G
Sbjct: 110 NEYESVKNDLEKLRNKLREEITKTNAGFKLDLSLEKG 146

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q8C3X2|CC90B_MOUSE Coiled-coil domain-containing protein 90B, mitochondrial OS=Mus musculus GN=Ccdc90b PE=2 SV=1

 Score = 56.6 bits (135), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 33/120 (27%), Positives = 66/120 (55%)

Query: 46  KRAFLVDTLQLVRGLEAQGVPSKQAEAITAAITEVLNDSLENVAHTFVSKGEMQKTEMIQ 105
           +R    DT  LV+ LE  G    QA+ I + ++ + N SL+ +    V+K + + T    
Sbjct: 56  QRKLTFDTHALVQDLETHGFDKTQAQTIVSVLSTLSNVSLDTIYKEMVTKAQQEITVQQL 115

Query: 106 EANLSKFKSEVQSSQEHHFSMLQRETEKLRSDIEKMRSELRYEIDKVTAGQRLDLNLERG 165
            A+L   + ++   ++  F+ L+ E EK++ ++++++ +L  E  ++ A  +LD+NLER 
Sbjct: 116 MAHLDSIRKDMVILEKSEFANLRAENEKMKIELDQVKQQLTNETSRIRADNKLDINLERS 175

Mus musculus (taxid: 10090)

>sp|Q96AQ8|MCUR1_HUMAN Mitochondrial calcium uniporter regulator 1 OS=Homo sapiens GN=CCDC90A PE=1 SV=1

 Score = 54.7 bits (130), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 68/122 (55%)

Query: 43  SNGKRAFLVDTLQLVRGLEAQGVPSKQAEAITAAITEVLNDSLENVAHTFVSKGEMQKTE 102
           S+G R    DT  LV  LE  G  ++QAE I +A+ ++L  +++ V    V+K + + T 
Sbjct: 158 SSGSRKLYFDTHALVCLLEDNGFATQQAEIIVSALVKILEANMDIVYKDMVTKMQQEITF 217

Query: 103 MIQEANLSKFKSEVQSSQEHHFSMLQRETEKLRSDIEKMRSELRYEIDKVTAGQRLDLNL 162
               + ++  K ++   ++  FS L+ E EK++ ++ +++ ++  E+ KV    +LD NL
Sbjct: 218 QQVMSQIANVKKDMIILEKSEFSALRAENEKIKLELHQLKQQVMDEVIKVRTDTKLDFNL 277

Query: 163 ER 164
           E+
Sbjct: 278 EK 279

Homo sapiens (taxid: 9606)

>sp|Q9CXD6|MCUR1_MOUSE Mitochondrial calcium uniporter regulator 1 OS=Mus musculus GN=Ccdc90a PE=2 SV=1

 Score = 48.1 bits (113), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 66/120 (55%), Gaps = 4/120 (3%)

Query: 47  RAFLVDTLQLVRGLEAQGVPSKQAEAITAAITEVLNDSLENVAHTFVSKGEMQKTEMIQE 106
           R    DT  LV  LEA G   +QAE I +A+ ++   ++  +    VSK  MQ+   +Q+
Sbjct: 143 RQLYFDTHALVCLLEANGFTIQQAEIIVSALVKITETNMNIIYKDMVSK--MQQEIALQQ 200

Query: 107 --ANLSKFKSEVQSSQEHHFSMLQRETEKLRSDIEKMRSELRYEIDKVTAGQRLDLNLER 164
             + ++  K ++   ++  FS L+ E EK++ ++ +++ ++  E+ KV    +L+ NLE+
Sbjct: 201 VLSKIANVKKDMVILEKSEFSALRAENEKIKLELHQLKQQVMDEVTKVRTDTKLNFNLEK 260

Mus musculus (taxid: 10090)

>sp|Q10073|YAN8_SCHPO Uncharacterized CCDC90 family protein C3H1.08c, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC3H1.08c PE=3 SV=1

 Score = 47.0 bits (110), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 29/108 (26%), Positives = 57/108 (52%)

Query: 58  RGLEAQGVPSKQAEAITAAITEVLNDSLENVAHTFVSKGEMQKTEMIQEANLSKFKSEVQ 117
           R LE  G   K AE IT  +  +  ++L  +      K + +     Q+    + +  ++
Sbjct: 44  RRLEQAGYSVKNAETITNLMRTITGEALTELEKNIGFKAKQESVSFQQKRTFLQIRKYLE 103

Query: 118 SSQEHHFSMLQRETEKLRSDIEKMRSELRYEIDKVTAGQRLDLNLERG 165
           + +E+ F  +++ ++KL ++IEK +S LR ++    +  RL+LNLE+G
Sbjct: 104 TIEENEFDKVRKSSDKLINEIEKTKSSLREDVKTALSEVRLNLNLEKG 151

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	165
224103329	231	predicted protein [Populus trichocarpa]	1.0	0.714	0.764	9e-67
255543851	174	conserved hypothetical protein [Ricinus	0.981	0.931	0.745	7e-66
42570799	173	uncharacterized protein [Arabidopsis tha	1.0	0.953	0.727	1e-62
18398123	230	uncharacterized protein [Arabidopsis tha	1.0	0.717	0.727	2e-62
449457500	249	PREDICTED: protein FMP32, mitochondrial-	0.993	0.658	0.711	2e-62
297836694	230	hypothetical protein ARALYDRAFT_900313 [	1.0	0.717	0.733	3e-62
388504548	236	unknown [Lotus japonicus]	0.987	0.690	0.726	4e-61
255586310	238	conserved hypothetical protein [Ricinus	0.933	0.647	0.757	7e-60
357518139	241	Coiled-coil domain-containing protein 90	0.854	0.585	0.816	9e-58
413943140	221	mitochondrion protein [Zea mays]	0.872	0.651	0.75	2e-57

>gi|224103329|ref|XP_002313013.1| predicted protein [Populus trichocarpa] gi|222849421|gb|EEE86968.1| predicted protein [Populus trichocarpa]

 Score =  257 bits (657), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 130/170 (76%), Positives = 147/170 (86%), Gaps = 5/170 (2%)

Query: 1   MALCKRVVKLVADSGVRVTKSQGFNLNYSNTIG----YRQISQLVK-SNGKRAFLVDTLQ 55
           MALC RVV+   +S +   KS+  N + S++ G    YR ISQLV+ +N KRAFLVDTL 
Sbjct: 1   MALCSRVVRSGVNSAIFFAKSRAINPSSSSSFGNRFDYRHISQLVRPNNNKRAFLVDTLA 60

Query: 56  LVRGLEAQGVPSKQAEAITAAITEVLNDSLENVAHTFVSKGEMQKTEMIQEANLSKFKSE 115
           LVRGLE+QGVPSKQAEAITAAITEVLNDSLENVA++FVSK EMQK+EMIQ++NLSKFKSE
Sbjct: 61  LVRGLESQGVPSKQAEAITAAITEVLNDSLENVAYSFVSKAEMQKSEMIQDSNLSKFKSE 120

Query: 116 VQSSQEHHFSMLQRETEKLRSDIEKMRSELRYEIDKVTAGQRLDLNLERG 165
           VQSSQEHHFS+LQRETEKLR DI+KMRSELRYEIDKVTAGQRLDLNLERG
Sbjct: 121 VQSSQEHHFSLLQRETEKLRGDIDKMRSELRYEIDKVTAGQRLDLNLERG 170

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255543851|ref|XP_002512988.1| conserved hypothetical protein [Ricinus communis] gi|223547999|gb|EEF49491.1| conserved hypothetical protein [Ricinus communis]

 Score =  254 bits (650), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 132/177 (74%), Positives = 143/177 (80%), Gaps = 15/177 (8%)

Query: 1   MALCKRVVKLVADSGVRVTKSQGFNLNY------------SNTIGYRQISQLVKSNGKRA 48
           MAL KR ++L ++S    T    F L +            +N   YRQISQLV  NGKRA
Sbjct: 1   MALTKRAIQLGSNSSFYFT---AFRLIHSSSSSSSSSSSIANRFDYRQISQLVNPNGKRA 57

Query: 49  FLVDTLQLVRGLEAQGVPSKQAEAITAAITEVLNDSLENVAHTFVSKGEMQKTEMIQEAN 108
           FLVDTL LVR LEAQGVPSKQAEAIT+AITEVLNDSLENVA +FVSK EMQK+EM+QE+N
Sbjct: 58  FLVDTLALVRSLEAQGVPSKQAEAITSAITEVLNDSLENVAQSFVSKTEMQKSEMVQESN 117

Query: 109 LSKFKSEVQSSQEHHFSMLQRETEKLRSDIEKMRSELRYEIDKVTAGQRLDLNLERG 165
           LSKFKSEVQSSQEHHFSMLQRETEKLRSDIEKMRSELRYEIDKVTAGQRLDLNLERG
Sbjct: 118 LSKFKSEVQSSQEHHFSMLQRETEKLRSDIEKMRSELRYEIDKVTAGQRLDLNLERG 174

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42570799|ref|NP_973473.1| uncharacterized protein [Arabidopsis thaliana] gi|330251405|gb|AEC06499.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  244 bits (622), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 123/169 (72%), Positives = 138/169 (81%), Gaps = 4/169 (2%)

Query: 1   MALCKRVVKLVADSGVRVTKSQGFN----LNYSNTIGYRQISQLVKSNGKRAFLVDTLQL 56
           M L KR+  L A S + + K +G      L       YRQ S+L K+NG+RAFLVDTL L
Sbjct: 1   MTLSKRLALLGAQSAITLAKPRGLGSSLGLLDRRPFPYRQFSELTKANGRRAFLVDTLAL 60

Query: 57  VRGLEAQGVPSKQAEAITAAITEVLNDSLENVAHTFVSKGEMQKTEMIQEANLSKFKSEV 116
           VR LEAQGVPSKQAEAIT+AITEVLNDSLENV+ +FVSK EMQK EMIQ++NLSKFKSEV
Sbjct: 61  VRSLEAQGVPSKQAEAITSAITEVLNDSLENVSESFVSKAEMQKIEMIQDSNLSKFKSEV 120

Query: 117 QSSQEHHFSMLQRETEKLRSDIEKMRSELRYEIDKVTAGQRLDLNLERG 165
           +SSQEHHF++LQRETEKLR DIEKMRSELRYEIDKVTAGQRLDLNLERG
Sbjct: 121 KSSQEHHFTVLQRETEKLRGDIEKMRSELRYEIDKVTAGQRLDLNLERG 169

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18398123|ref|NP_565388.1| uncharacterized protein [Arabidopsis thaliana] gi|17529264|gb|AAL38859.1| unknown protein [Arabidopsis thaliana] gi|20198032|gb|AAD22294.2| expressed protein [Arabidopsis thaliana] gi|21536621|gb|AAM60953.1| unknown [Arabidopsis thaliana] gi|29824341|gb|AAP04131.1| unknown protein [Arabidopsis thaliana] gi|330251406|gb|AEC06500.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  243 bits (620), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 123/169 (72%), Positives = 138/169 (81%), Gaps = 4/169 (2%)

Query: 1   MALCKRVVKLVADSGVRVTKSQGFN----LNYSNTIGYRQISQLVKSNGKRAFLVDTLQL 56
           M L KR+  L A S + + K +G      L       YRQ S+L K+NG+RAFLVDTL L
Sbjct: 1   MTLSKRLALLGAQSAITLAKPRGLGSSLGLLDRRPFPYRQFSELTKANGRRAFLVDTLAL 60

Query: 57  VRGLEAQGVPSKQAEAITAAITEVLNDSLENVAHTFVSKGEMQKTEMIQEANLSKFKSEV 116
           VR LEAQGVPSKQAEAIT+AITEVLNDSLENV+ +FVSK EMQK EMIQ++NLSKFKSEV
Sbjct: 61  VRSLEAQGVPSKQAEAITSAITEVLNDSLENVSESFVSKAEMQKIEMIQDSNLSKFKSEV 120

Query: 117 QSSQEHHFSMLQRETEKLRSDIEKMRSELRYEIDKVTAGQRLDLNLERG 165
           +SSQEHHF++LQRETEKLR DIEKMRSELRYEIDKVTAGQRLDLNLERG
Sbjct: 121 KSSQEHHFTVLQRETEKLRGDIEKMRSELRYEIDKVTAGQRLDLNLERG 169

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449457500|ref|XP_004146486.1| PREDICTED: protein FMP32, mitochondrial-like [Cucumis sativus] gi|449515255|ref|XP_004164665.1| PREDICTED: protein FMP32, mitochondrial-like [Cucumis sativus]

 Score =  243 bits (619), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 131/184 (71%), Positives = 145/184 (78%), Gaps = 20/184 (10%)

Query: 2   ALCKRVVKLVADSGVR---VTKSQGF----------NLNYSNTI-------GYRQISQLV 41
           A CKRV +LVA+SG+R   V+    F          NL+ S ++         RQISQLV
Sbjct: 5   AACKRVGQLVANSGLRRLGVSNVSSFESSIFDHSANNLSASISLISRYRHYECRQISQLV 64

Query: 42  KSNGKRAFLVDTLQLVRGLEAQGVPSKQAEAITAAITEVLNDSLENVAHTFVSKGEMQKT 101
           KSNGKR FLVDTL LVR LE QGVPS QAEAITAAITEVLNDSLEN++H+FVSKGEMQK 
Sbjct: 65  KSNGKRLFLVDTLALVRKLEGQGVPSNQAEAITAAITEVLNDSLENISHSFVSKGEMQKI 124

Query: 102 EMIQEANLSKFKSEVQSSQEHHFSMLQRETEKLRSDIEKMRSELRYEIDKVTAGQRLDLN 161
           EMIQ++NLSKFKSEVQSSQ HHFS+L  ETEKLR+DIEKMRSELRYEIDKVTAGQRLDLN
Sbjct: 125 EMIQDSNLSKFKSEVQSSQGHHFSLLGHETEKLRNDIEKMRSELRYEIDKVTAGQRLDLN 184

Query: 162 LERG 165
           LERG
Sbjct: 185 LERG 188

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297836694|ref|XP_002886229.1| hypothetical protein ARALYDRAFT_900313 [Arabidopsis lyrata subsp. lyrata] gi|297332069|gb|EFH62488.1| hypothetical protein ARALYDRAFT_900313 [Arabidopsis lyrata subsp. lyrata]

 Score =  243 bits (619), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 124/169 (73%), Positives = 140/169 (82%), Gaps = 4/169 (2%)

Query: 1   MALCKRVVKLVADSGVRVTKSQGF--NLNYSN--TIGYRQISQLVKSNGKRAFLVDTLQL 56
           M L KR+  L A S + + K +G   +L   N     YRQ S+L K+NG+RAFLVDTL L
Sbjct: 1   MTLSKRLALLGAQSAITLAKPRGLVSSLGLLNRRQFPYRQYSELTKANGRRAFLVDTLAL 60

Query: 57  VRGLEAQGVPSKQAEAITAAITEVLNDSLENVAHTFVSKGEMQKTEMIQEANLSKFKSEV 116
           VR LEAQGVPSKQAEAIT+AITEVLNDSLENV+ +FVSK EMQK EMIQ++NLSKFKSEV
Sbjct: 61  VRSLEAQGVPSKQAEAITSAITEVLNDSLENVSESFVSKAEMQKIEMIQDSNLSKFKSEV 120

Query: 117 QSSQEHHFSMLQRETEKLRSDIEKMRSELRYEIDKVTAGQRLDLNLERG 165
           +SSQEHHF++LQRETEKLR DIEKMRSELRYEIDKVTAGQRLDLNLERG
Sbjct: 121 KSSQEHHFTVLQRETEKLRGDIEKMRSELRYEIDKVTAGQRLDLNLERG 169

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388504548|gb|AFK40340.1| unknown [Lotus japonicus]

 Score =  238 bits (608), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 125/172 (72%), Positives = 137/172 (79%), Gaps = 9/172 (5%)

Query: 3   LCKRVVKLVADSGVRVTKSQG-FNLNYSNTI--------GYRQISQLVKSNGKRAFLVDT 53
           +CKRV +L    G RV+K Q  F     N +        G R IS+LVKSNGK  FLVDT
Sbjct: 4   ICKRVKQLARFGGFRVSKVQSSFERPICNPLSASSPSVSGTRHISELVKSNGKHLFLVDT 63

Query: 54  LQLVRGLEAQGVPSKQAEAITAAITEVLNDSLENVAHTFVSKGEMQKTEMIQEANLSKFK 113
           L LVR LE QGVPSKQAEAITAAIT VLNDSLENV+ + VSKGEMQKTEMIQE+NLSKFK
Sbjct: 64  LALVRRLEGQGVPSKQAEAITAAITGVLNDSLENVSQSLVSKGEMQKTEMIQESNLSKFK 123

Query: 114 SEVQSSQEHHFSMLQRETEKLRSDIEKMRSELRYEIDKVTAGQRLDLNLERG 165
           SEVQSSQ HHFS+LQ ETEKLR+DIEKMRSELRYE+DKVTAGQRLD+NLERG
Sbjct: 124 SEVQSSQGHHFSLLQHETEKLRNDIEKMRSELRYEMDKVTAGQRLDMNLERG 175

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255586310|ref|XP_002533806.1| conserved hypothetical protein [Ricinus communis] gi|223526260|gb|EEF28575.1| conserved hypothetical protein [Ricinus communis]

 Score =  234 bits (598), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 122/161 (75%), Positives = 134/161 (83%), Gaps = 7/161 (4%)

Query: 12  ADSGV---RVTKSQGFNL----NYSNTIGYRQISQLVKSNGKRAFLVDTLQLVRGLEAQG 64
           A+SG+   R ++  GF       +++    RQISQ VKSNG+R FLVDTL LVR LEAQG
Sbjct: 17  ANSGIHFLRGSRRVGFGALDFDPFASISPCRQISQFVKSNGRRVFLVDTLALVRRLEAQG 76

Query: 65  VPSKQAEAITAAITEVLNDSLENVAHTFVSKGEMQKTEMIQEANLSKFKSEVQSSQEHHF 124
           VPSKQAEAIT AITEVLNDSLENV+H+ VSK EMQKTEMIQE NLSKFKSEVQSSQEHHF
Sbjct: 77  VPSKQAEAITGAITEVLNDSLENVSHSVVSKTEMQKTEMIQETNLSKFKSEVQSSQEHHF 136

Query: 125 SMLQRETEKLRSDIEKMRSELRYEIDKVTAGQRLDLNLERG 165
           S+LQ ETEKLR DIEKMRSELR+EIDKVTAGQRLDLNLERG
Sbjct: 137 SLLQHETEKLRHDIEKMRSELRHEIDKVTAGQRLDLNLERG 177

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357518139|ref|XP_003629358.1| Coiled-coil domain-containing protein 90B [Medicago truncatula] gi|355523380|gb|AET03834.1| Coiled-coil domain-containing protein 90B [Medicago truncatula]

 Score =  228 bits (580), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 116/142 (81%), Positives = 124/142 (87%), Gaps = 1/142 (0%)

Query: 24  FNLNYSNTIGYRQISQLVKSNGKRAFLVDTLQLVRGLEAQGVPSKQAEAITAAITEVLND 83
            + + S T  + Q SQLVKSNGK  FLVDTL LVR LE QGVPSKQAEAITAAITEVLND
Sbjct: 40  LSFSASTTRSFSQ-SQLVKSNGKHLFLVDTLALVRRLEGQGVPSKQAEAITAAITEVLND 98

Query: 84  SLENVAHTFVSKGEMQKTEMIQEANLSKFKSEVQSSQEHHFSMLQRETEKLRSDIEKMRS 143
           SLENV+   VSKGEMQKTEMIQE+NLSKFKSEVQSSQ HHFS+LQ ETEKLR+DIEKMRS
Sbjct: 99  SLENVSQALVSKGEMQKTEMIQESNLSKFKSEVQSSQGHHFSLLQHETEKLRNDIEKMRS 158

Query: 144 ELRYEIDKVTAGQRLDLNLERG 165
           ELRYE+DKVTAGQRLDLNLERG
Sbjct: 159 ELRYEMDKVTAGQRLDLNLERG 180

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|413943140|gb|AFW75789.1| mitochondrion protein [Zea mays]

 Score =  226 bits (576), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 108/144 (75%), Positives = 129/144 (89%)

Query: 22  QGFNLNYSNTIGYRQISQLVKSNGKRAFLVDTLQLVRGLEAQGVPSKQAEAITAAITEVL 81
           Q +   ++     R ISQLVK+NG+RAFLVDTL LVR LE+QGVP+KQAEAIT+AITEVL
Sbjct: 17  QQWPQRWAAAPCPRSISQLVKTNGRRAFLVDTLALVRKLESQGVPTKQAEAITSAITEVL 76

Query: 82  NDSLENVAHTFVSKGEMQKTEMIQEANLSKFKSEVQSSQEHHFSMLQRETEKLRSDIEKM 141
           NDSLE+++ +FVSK EMQK+EM+QE+N+SKFKS+VQSSQE+HFS+LQRETEKLR DI+KM
Sbjct: 77  NDSLESISESFVSKAEMQKSEMLQESNISKFKSQVQSSQENHFSLLQRETEKLRGDIDKM 136

Query: 142 RSELRYEIDKVTAGQRLDLNLERG 165
           RSEL+YEIDKVTAGQRLDLNLERG
Sbjct: 137 RSELKYEIDKVTAGQRLDLNLERG 160

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	165
TAIR|locus:2042644	230	AT2G16460 "AT2G16460" [Arabido	1.0	0.717	0.721	7.5e-57
TAIR|locus:2080838	298	AT3G51090 "AT3G51090" [Arabido	0.884	0.489	0.688	6e-48
CGD|CAL0006025	208	orf19.2939 [Candida albicans (	0.781	0.620	0.330	7.7e-16
UNIPROTKB|Q5AIB4	208	FMP32 "Potential mitochondrial	0.781	0.620	0.330	7.7e-16
UNIPROTKB|G4N0K5	286	MGG_07736 "Uncharacterized pro	0.690	0.398	0.359	9.8e-16
ASPGD|ASPL0000030120	307	AN10711 [Emericella nidulans (	0.727	0.390	0.316	6.1e-15
UNIPROTKB|F1NVU8	252	CCDC90B "Uncharacterized prote	0.721	0.472	0.319	5.6e-13
UNIPROTKB|Q0P4J6	262	ccdc90a "Mitochondrial calcium	0.878	0.553	0.3	5.6e-13
UNIPROTKB|Q9GZT6	254	CCDC90B "Coiled-coil domain-co	0.721	0.468	0.294	7.1e-13
UNIPROTKB|A6QPA1	248	CCDC90B "CCDC90B protein" [Bos	0.721	0.479	0.302	1.9e-12

TAIR|locus:2042644 AT2G16460 "AT2G16460" [Arabidopsis thaliana (taxid:3702)]

 Score = 585 (211.0 bits), Expect = 7.5e-57, P = 7.5e-57
 Identities = 122/169 (72%), Positives = 138/169 (81%)

Query:     1 MALCKRVVKLVADSGVRVTKSQGFNLNYS----NTIGYRQISQLVKSNGKRAFLVDTLQL 56
             M L KR+  L A S + + K +G   +          YRQ S+L K+NG+RAFLVDTL L
Sbjct:     1 MTLSKRLALLGAQSAITLAKPRGLGSSLGLLDRRPFPYRQFSELTKANGRRAFLVDTLAL 60

Query:    57 VRGLEAQGVPSKQAEAITAAITEVLNDSLENVAHTFVSKGEMQKTEMIQEANLSKFKSEV 116
             VR LEAQGVPSKQAEAIT+AITEVLNDSLENV+ +FVSK EMQK EMIQ++NLSKFKSEV
Sbjct:    61 VRSLEAQGVPSKQAEAITSAITEVLNDSLENVSESFVSKAEMQKIEMIQDSNLSKFKSEV 120

Query:   117 QSSQEHHFSMLQRETEKLRSDIEKMRSELRYEIDKVTAGQRLDLNLERG 165
             +SSQEHHF++LQRETEKLR DIEKMRSELRYEIDKVTAGQRLDLNLERG
Sbjct:   121 KSSQEHHFTVLQRETEKLRGDIEKMRSELRYEIDKVTAGQRLDLNLERG 169

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0005739 "mitochondrion" evidence=IDA

GO:0046872 "metal ion binding" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

TAIR|locus:2080838 AT3G51090 "AT3G51090" [Arabidopsis thaliana (taxid:3702)]

 Score = 501 (181.4 bits), Expect = 6.0e-48, P = 6.0e-48
 Identities = 106/154 (68%), Positives = 125/154 (81%)

Query:    20 KSQGFNLNYSNTIGY---RQ-----ISQLVKSNGKRAFLVDTLQLVRGLEAQGVPSKQAE 71
             K+Q F  + S+ + Y   RQ     ISQL+K+NGKR FLVDTL LVR LEAQG+PSKQAE
Sbjct:    84 KTQEFRSSSSSLVSYSSFRQFHARFISQLIKTNGKRLFLVDTLALVRSLEAQGLPSKQAE 143

Query:    72 AITAAITEVLNDSLENVAHTFVSKGEMQKTEMIQEANLSKFKSEVQSSQEHHFSMLQRET 131
             AIT AITEVLNDSL  V+   VSKGEMQK EM QE+NLSKFKSE+ SS +HHFS+LQ E 
Sbjct:   144 AITGAITEVLNDSLGVVSQLVVSKGEMQKAEMTQESNLSKFKSEINSSLDHHFSLLQHEN 203

Query:   132 EKLRSDIEKMRSELRYEIDKVTAGQRLDLNLERG 165
             EKLR+DIE++RS++R+EIDKVTAGQRLDLNLE+G
Sbjct:   204 EKLRNDIERIRSDIRHEIDKVTAGQRLDLNLEKG 237

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0006914 "autophagy" evidence=RCA

GO:0009062 "fatty acid catabolic process" evidence=RCA

CGD|CAL0006025 orf19.2939 [Candida albicans (taxid:5476)]

 Score = 198 (74.8 bits), Expect = 7.7e-16, P = 7.7e-16
 Identities = 45/136 (33%), Positives = 74/136 (54%)

Query:    30 NTIGYRQISQLVKSNGKRAFLVDTLQLVRGLEAQGVPSKQAEAITAAITEVLNDSLENVA 89
             +TI  R +S + K + ++   V TLQ     +  G   KQAE     +   +ND + ++ 
Sbjct:    19 STINSRSLSGITKFDTRK--FVQTLQ-----DKGGFSEKQAEVAVNVVNAAINDGIYSIT 71

Query:    90 HTFVSKGEMQKTEMIQEANLSKFKSEVQSSQEHHFSMLQRETEKLRSDIEKMRSELRYEI 149
             +  V K  +      Q+ N +K K E+Q+  +  F+ L++E EKLR+D+  +++ L+ EI
Sbjct:    72 NNLVKKESLSSIAYQQKVNFAKLKGELQTMDKSEFTSLKKEQEKLRTDLTNLKNRLKEEI 131

Query:   150 DKVTAGQRLDLNLERG 165
              K  A  RLDLNLE+G
Sbjct:   132 TKNQASVRLDLNLEKG 147

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=IEA

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q5AIB4 FMP32 "Potential mitochondrial protein Fmp32" [Candida albicans SC5314 (taxid:237561)]

 Score = 198 (74.8 bits), Expect = 7.7e-16, P = 7.7e-16
 Identities = 45/136 (33%), Positives = 74/136 (54%)

Query:    30 NTIGYRQISQLVKSNGKRAFLVDTLQLVRGLEAQGVPSKQAEAITAAITEVLNDSLENVA 89
             +TI  R +S + K + ++   V TLQ     +  G   KQAE     +   +ND + ++ 
Sbjct:    19 STINSRSLSGITKFDTRK--FVQTLQ-----DKGGFSEKQAEVAVNVVNAAINDGIYSIT 71

Query:    90 HTFVSKGEMQKTEMIQEANLSKFKSEVQSSQEHHFSMLQRETEKLRSDIEKMRSELRYEI 149
             +  V K  +      Q+ N +K K E+Q+  +  F+ L++E EKLR+D+  +++ L+ EI
Sbjct:    72 NNLVKKESLSSIAYQQKVNFAKLKGELQTMDKSEFTSLKKEQEKLRTDLTNLKNRLKEEI 131

Query:   150 DKVTAGQRLDLNLERG 165
              K  A  RLDLNLE+G
Sbjct:   132 TKNQASVRLDLNLEKG 147

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|G4N0K5 MGG_07736 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 197 (74.4 bits), Expect = 9.8e-16, P = 9.8e-16
 Identities = 41/114 (35%), Positives = 69/114 (60%)

Query:    52 DTLQLVRGLEAQGVPSKQAEAITAAITEVLNDSLENVAHTFVSKGEMQKTEMIQEANLSK 111
             DTL+LV+ L+++G    QAEA+   + +V+ +S++N+  T V + +  K    Q+ + +K
Sbjct:   112 DTLKLVQRLQSEGFTETQAEAMMKILNDVIEESIQNLTRTMVPREDAAKATYTQKVDFAK 171

Query:   112 FKSEVQSSQEHHFSMLQRETEKLRSDIEKMRSELRYEIDKVTAGQRLDLNLERG 165
              +SE+ S+     +  +   E+L +DI K+ S LR EI +  A  RLDLNLE+G
Sbjct:   172 LRSELLSTDNTETNTTRAAHERLTNDIAKLSSRLRDEIGRTQASVRLDLNLEKG 225

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

ASPGD|ASPL0000030120 AN10711 [Emericella nidulans (taxid:162425)]

 Score = 191 (72.3 bits), Expect = 6.1e-15, P = 6.1e-15
 Identities = 38/120 (31%), Positives = 72/120 (60%)

Query:    46 KRAFLVDTLQLVRGLEAQGVPSKQAEAITAAITEVLNDSLENVAHTFVSKGEMQKTEMIQ 105
             KR    DTL+ V+ L+ +G   +QA A+   + +V+ +S++N+  T V + + +++   Q
Sbjct:   127 KRDHHFDTLKFVQRLKDEGFSEEQAVAMMRVLNDVIQESIQNLTRTMVLREDTERSAYTQ 186

Query:   106 EANLSKFKSEVQSSQEHHFSMLQRETEKLRSDIEKMRSELRYEIDKVTAGQRLDLNLERG 165
             + + +K +SE+ ++      +++   EK+ +D+ K+ S LR EI +  A  RLDLNLE+G
Sbjct:   187 KVDFAKLRSELLNADSTEAQLIRSSHEKIAADLAKLNSRLRDEIGRTQASVRLDLNLEKG 246

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|F1NVU8 CCDC90B "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
 Identities = 38/119 (31%), Positives = 67/119 (56%)

Query:    46 KRAFLVDTLQLVRGLEAQGVPSKQAEAITAAITEVLNDSLENVAHTFVSKGEMQKTEMIQ 105
             +R    DT  LVR LE  G   +QAE I +A+  + N SLE V    V++ + + T    
Sbjct:    54 QRKVTFDTHALVRDLETHGFAKEQAETIVSALITLSNVSLETVYKDMVTQAQQEITLQQI 113

Query:   106 EANLSKFKSEVQSSQEHHFSMLQRETEKLRSDIEKMRSELRYEIDKVTAGQRLDLNLER 164
              A+L   + ++   ++  F+ L+ E EK++ ++++++ +L  E  K+ A  +LD+NLER
Sbjct:   114 MAHLDSIRKDMVILEKSEFANLRAENEKMKIELDQVKQQLMNETSKIQADSKLDINLER 172

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|Q0P4J6 ccdc90a "Mitochondrial calcium uniporter regulator 1" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
 Identities = 45/150 (30%), Positives = 87/150 (58%)

Query:    17 RVTKSQGFNLNYSNTIGYRQISQ-LVKSNGKRAFLVDTLQLVRGLEAQGVPSKQAEAITA 75
             RVT  + FN+  ++T+ Y    + +  S GK  F  DT  +V+ LEA G  ++Q+E + +
Sbjct:    36 RVTCFRDFNI-ITSTMQYNLDKRNIYTSVGKHYFF-DTHAVVQLLEANGFSAEQSEIVVS 93

Query:    76 AITEVLNDSLENVAHTFVSKGEMQKTEMIQEANL-SKFKSEVQSSQEHHFSMLQRETEKL 134
             A+ ++LN ++  +    V+K E Q+  + Q  +L +  K ++   ++  FS L+ + EK+
Sbjct:    94 ALVKILNVNMNLIHKDMVTK-EQQEISLQQVMSLIASVKKDMIILEKSEFSALRTQNEKV 152

Query:   135 RSDIEKMRSELRYEIDKVTAGQRLDLNLER 164
             + ++++++ +L   I KV A  +LD NLE+
Sbjct:   153 KIELQQLKKQLNDSIVKVRASNKLDFNLEK 182

GO:0006851 "mitochondrial calcium ion transport" evidence=ISS

GO:0031305 "integral to mitochondrial inner membrane" evidence=ISS

GO:0051561 "elevation of mitochondrial calcium ion concentration" evidence=ISS

GO:0070509 "calcium ion import" evidence=ISS

UNIPROTKB|Q9GZT6 CCDC90B "Coiled-coil domain-containing protein 90B, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 170 (64.9 bits), Expect = 7.1e-13, P = 7.1e-13
 Identities = 35/119 (29%), Positives = 68/119 (57%)

Query:    46 KRAFLVDTLQLVRGLEAQGVPSKQAEAITAAITEVLNDSLENVAHTFVSKGEMQKTEMIQ 105
             +R    DT  LV+ LE  G    QAE I +A+T + N SL+ +    V++ + + T    
Sbjct:    56 QRKLTFDTHALVQDLETHGFDKTQAETIVSALTALSNVSLDTIYKEMVTQAQQEITVQQL 115

Query:   106 EANLSKFKSEVQSSQEHHFSMLQRETEKLRSDIEKMRSELRYEIDKVTAGQRLDLNLER 164
              A+L   + ++   ++  F+ L+ E EK++ ++++++ +L +E  ++ A  +LD+NLER
Sbjct:   116 MAHLDAIRKDMVILEKSEFANLRAENEKMKIELDQVKQQLMHETSRIRADNKLDINLER 174

GO:0016021 "integral to membrane" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

UNIPROTKB|A6QPA1 CCDC90B "CCDC90B protein" [Bos taurus (taxid:9913)]

 Score = 166 (63.5 bits), Expect = 1.9e-12, P = 1.9e-12
 Identities = 36/119 (30%), Positives = 67/119 (56%)

Query:    46 KRAFLVDTLQLVRGLEAQGVPSKQAEAITAAITEVLNDSLENVAHTFVSKGEMQKTEMIQ 105
             +R    DT  LV  LEA G    QAE I +A+T + N SL+ +    V++ + + T    
Sbjct:    50 QRELTFDTHALVLDLEAHGFDKAQAETIVSALTTLSNVSLDTIYKEMVTQAQQEITVQQL 109

Query:   106 EANLSKFKSEVQSSQEHHFSMLQRETEKLRSDIEKMRSELRYEIDKVTAGQRLDLNLER 164
              A+L   + ++   ++  F+ L+ E +K++ ++E+++ +L  E  ++ A  +LD+NLER
Sbjct:   110 MAHLDSIRKDMVILEKSEFANLRAENQKMKIELEQVKQQLINETSRIRADNKLDINLER 168

GO:0005739 "mitochondrion" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pg.C_LG_IX0416 hypothetical protein (231 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	165
pfam07798	177	pfam07798, DUF1640, Protein of unknown function (D	1e-46

>gnl|CDD|191851 pfam07798, DUF1640, Protein of unknown function (DUF1640)

 Score =  149 bits (379), Expect = 1e-46
 Identities = 61/116 (52%), Positives = 86/116 (74%)

Query: 50  LVDTLQLVRGLEAQGVPSKQAEAITAAITEVLNDSLENVAHTFVSKGEMQKTEMIQEANL 109
             DTL LV+ LE  G   +QAEAI +A+T+V+NDS+ENV+   V+K + +KTE  Q+ + 
Sbjct: 1   HFDTLALVQSLEENGFTEEQAEAIVSALTDVINDSIENVSKDMVTKEQQEKTEYQQKVDF 60

Query: 110 SKFKSEVQSSQEHHFSMLQRETEKLRSDIEKMRSELRYEIDKVTAGQRLDLNLERG 165
           +K KSE+QS ++  F+ LQ E EKL++D+EK+++ LR EI KVTAG RLDLNLE+G
Sbjct: 61  AKLKSELQSLEKSEFANLQAENEKLKNDLEKLKNRLRDEITKVTAGVRLDLNLEKG 116

This family consists of sequences derived from hypothetical eukaryotic proteins. A region approximately 100 residues in length is featured. Length = 177

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	165
KOG3156	220	consensus Uncharacterized membrane protein [Functi	100.0
PF07798	177	DUF1640: Protein of unknown function (DUF1640); In	100.0
COG3937	108	Uncharacterized conserved protein [Function unknow	95.38
TIGR01837	118	PHA_granule_1 poly(hydroxyalkanoate) granule-assoc	95.23
PF02183	45	HALZ: Homeobox associated leucine zipper; InterPro	94.62
COG3524	372	KpsE Capsule polysaccharide export protein [Cell e	92.98
PF07798	177	DUF1640: Protein of unknown function (DUF1640); In	91.98
PF10805	106	DUF2730: Protein of unknown function (DUF2730); In	91.45
PRK11546	143	zraP zinc resistance protein; Provisional	88.67
PF05377	55	FlaC_arch: Flagella accessory protein C (FlaC); In	86.79
cd04766	91	HTH_HspR Helix-Turn-Helix DNA binding domain of th	86.57
PF09969	120	DUF2203: Uncharacterized conserved protein (DUF220	86.25
PRK10884	206	SH3 domain-containing protein; Provisional	86.23
PF09738	302	DUF2051: Double stranded RNA binding protein (DUF2	85.29
PRK15178	434	Vi polysaccharide export inner membrane protein Ve	84.51
PF04420	161	CHD5: CHD5-like protein; InterPro: IPR007514 Membe	83.85
PF06156	107	DUF972: Protein of unknown function (DUF972); Inte	81.79
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	81.62
PRK00888	105	ftsB cell division protein FtsB; Reviewed	81.42
PRK13182	175	racA polar chromosome segregation protein; Reviewe	80.76
PF04380	79	BMFP: Membrane fusogenic activity; InterPro: IPR00	80.09

>KOG3156 consensus Uncharacterized membrane protein [Function unknown]

Probab=100.00  E-value=4.1e-39  Score=265.39  Aligned_cols=135  Identities=50%  Similarity=0.667  Sum_probs=129.9

Q ss_pred             CCCccceecccccCCCCcceeccHHHHHHHHhhCCCChHHHHHHHHHHHHHHHhhHHHHhhhhhhhhHHHHHHHHHHHHH
Q 031121           30 NTIGYRQISQLVKSNGKRAFLVDTLQLVRGLEAQGVPSKQAEAITAAITEVLNDSLENVAHTFVSKGEMQKTEMIQEANL  109 (165)
Q Consensus        30 ~~~~~~~~s~~~~~~~~~~~~FDT~~fVk~Le~~Gft~eQAEai~~al~~vl~~~le~~~~~lvTK~dle~~~~~qkad~  109 (165)
                      .+-+++++++.+.. +.+.++||||++|+.||++||+..|||+|+.+|+++++++++.+++++|||++++...|+|+++|
T Consensus        25 ~~~hrr~~~~~~~~-~~r~~~~dt~alvr~LE~~Gf~~kQAETIt~aiT~v~ndsl~~vsk~~vtkaqq~~v~~QQ~~~f  103 (220)
T KOG3156|consen   25 TQFHRRQSSQLSGF-GRRKFPFDTHALVRSLEAAGFDSKQAETITSAITTVLNDSLETVSKELVTKAQQEKVSYQQKVDF  103 (220)
T ss_pred             cccceehhhhcCcc-cccccchhHHHHHHHHHHcCCChhhHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34557777887777 88999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhhcccccCC
Q 031121          110 SKFKSEVQSSQEHHFSMLQRETEKLRSDIEKMRSELRYEIDKVTAGQRLDLNLERG  165 (165)
Q Consensus       110 a~LR~Em~~~eksefa~Lr~e~ekL~~ElekLkq~LreEI~kl~a~vrLDlNLEKg  165 (165)
                      +++|+||.+++++||++||+|+|+|++|||++|++||+||++++|++|||||||||
T Consensus       104 ~kiRsel~S~e~sEF~~lr~e~EklkndlEk~ks~lr~ei~~~~a~~rLdLNLEkg  159 (220)
T KOG3156|consen  104 AKIRSELVSIERSEFANLRAENEKLKNDLEKLKSSLRHEISKTTAEFRLDLNLEKG  159 (220)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhceeecchhhc
Confidence            99999999999999999999999999999999999999999999999999999998

>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins

Probab=100.00  E-value=3.3e-36  Score=241.41  Aligned_cols=116  Identities=47%  Similarity=0.710  Sum_probs=115.1

Q ss_pred             eccHHHHHHHHhhCCCChHHHHHHHHHHHHHHHhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHH
Q 031121           50 LVDTLQLVRGLEAQGVPSKQAEAITAAITEVLNDSLENVAHTFVSKGEMQKTEMIQEANLSKFKSEVQSSQEHHFSMLQR  129 (165)
Q Consensus        50 ~FDT~~fVk~Le~~Gft~eQAEai~~al~~vl~~~le~~~~~lvTK~dle~~~~~qkad~a~LR~Em~~~eksefa~Lr~  129 (165)
                      |||||+||++|+++|||++|||+||.+++++++++++.+++++|||+|+++..|+++++|++||+||+.+++++|+.+++
T Consensus         1 hFDT~~~v~~Le~~Gft~~QAe~i~~~l~~~l~~~~~~~~~~~vtk~d~e~~~~~~~a~~~eLr~el~~~~k~~~~~lr~   80 (177)
T PF07798_consen    1 HFDTHKFVKRLEAAGFTEEQAEAIMKALREVLNDSLEKVAQDLVTKSDLENQEYLFKAAIAELRSELQNSRKSEFAELRS   80 (177)
T ss_pred             CCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccchhhcccccCC
Q 031121          130 ETEKLRSDIEKMRSELRYEIDKVTAGQRLDLNLERG  165 (165)
Q Consensus       130 e~ekL~~ElekLkq~LreEI~kl~a~vrLDlNLEKg  165 (165)
                      ++++|++|+++|+++|++||.++++++|||||+|||
T Consensus        81 ~~e~L~~eie~l~~~L~~ei~~l~a~~klD~n~eK~  116 (177)
T PF07798_consen   81 ENEKLQREIEKLRQELREEINKLRAEVKLDLNLEKG  116 (177)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            999999999999999999999999999999999996

>COG3937 Uncharacterized conserved protein [Function unknown]

Probab=95.38  E-value=0.25  Score=37.62  Aligned_cols=79  Identities=13%  Similarity=0.271  Sum_probs=58.8

Q ss_pred             HHHHHHhhCC-CChHHHHHHHHHHHHHHHhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHH
Q 031121           55 QLVRGLEAQG-VPSKQAEAITAAITEVLNDSLENVAHTFVSKGEMQKTEMIQEANLSKFKSEVQSSQEHHFSMLQRETEK  133 (165)
Q Consensus        55 ~fVk~Le~~G-ft~eQAEai~~al~~vl~~~le~~~~~lvTK~dle~~~~~qkad~a~LR~Em~~~eksefa~Lr~e~ek  133 (165)
                      ++|..|=+.| ++.++|..++.-+..-+.             .......-.+...|..+=++....++++...++.+.+.
T Consensus        28 klvDelVkkGeln~eEak~~vddl~~q~k-------------~~~~e~e~K~~r~i~~ml~~~~~~r~~~~~~l~~rvd~   94 (108)
T COG3937          28 KLVDELVKKGELNAEEAKRFVDDLLRQAK-------------EAQGELEEKIPRKIEEMLSDLEVARQSEMDELTERVDA   94 (108)
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHHHH-------------HHhhhHHHhhhHHHHHHHhhccccccchHHHHHHHHHH
Confidence            6788888888 999999888765433222             11122333456677777788888899999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 031121          134 LRSDIEKMRSELR  146 (165)
Q Consensus       134 L~~ElekLkq~Lr  146 (165)
                      |+.++.+|++++.
T Consensus        95 Lerqv~~Lenk~k  107 (108)
T COG3937          95 LERQVADLENKLK  107 (108)
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999998764

>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein

Probab=95.23  E-value=0.41  Score=36.36  Aligned_cols=89  Identities=11%  Similarity=0.196  Sum_probs=65.9

Q ss_pred             HHHHHHHhhCC-CChHHHHHHHHHHHHHHHhhHHHHhhhhhhhhH--HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHH
Q 031121           54 LQLVRGLEAQG-VPSKQAEAITAAITEVLNDSLENVAHTFVSKGE--MQKTEMIQEANLSKFKSEVQSSQEHHFSMLQRE  130 (165)
Q Consensus        54 ~~fVk~Le~~G-ft~eQAEai~~al~~vl~~~le~~~~~lvTK~d--le~~~~~qkad~a~LR~Em~~~eksefa~Lr~e  130 (165)
                      -+|+..|-+.| .+++++..++.-+.+-+.+.+.....+...+++  ..+++..+...+..+=..|-...+.|+..|+..
T Consensus        25 ~k~~~~LVkkGe~~~ee~k~~~~e~~~~~~e~~~~~~~~~~~~~~~~~~~le~~~~~~v~~~L~~lg~~tk~ev~~L~~R  104 (118)
T TIGR01837        25 SKFFNRLVKEGELAEKRGQKRFDESVDAAREEVKTALEQTRDQVQRNWDKLEKAFDERVEQALNRLNIPSREEIEALSAK  104 (118)
T ss_pred             HHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence            37888898889 999999999888777777665544444444332  234555667778888888888888888888888


Q ss_pred             HHHHHHHHHHHH
Q 031121          131 TEKLRSDIEKMR  142 (165)
Q Consensus       131 ~ekL~~ElekLk  142 (165)
                      ++.|...+++|+
T Consensus       105 I~~Le~~l~~l~  116 (118)
T TIGR01837       105 IEQLAVQVEELR  116 (118)
T ss_pred             HHHHHHHHHHHh
Confidence            888887777765

This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.

>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []

Probab=94.62  E-value=0.14  Score=33.09  Aligned_cols=41  Identities=24%  Similarity=0.530  Sum_probs=30.4

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 031121          105 QEANLSKFKSEVQSSQEHHFSMLQRETEKLRSDIEKMRSELR  146 (165)
Q Consensus       105 qkad~a~LR~Em~~~eksefa~Lr~e~ekL~~ElekLkq~Lr  146 (165)
                      ...|+.-||+.-..+ ++++..|..|++.|+.++..|+..|.
T Consensus         3 lE~Dy~~LK~~yd~L-k~~~~~L~~E~~~L~aev~~L~~kl~   43 (45)
T PF02183_consen    3 LERDYDALKASYDSL-KAEYDSLKKENEKLRAEVQELKEKLQ   43 (45)
T ss_pred             hHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            456777777776555 57778888888888888888877663

; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>COG3524 KpsE Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]

Probab=92.98  E-value=0.58  Score=41.84  Aligned_cols=134  Identities=19%  Similarity=0.202  Sum_probs=74.5

Q ss_pred             eeccccccccCCCCCccceecccccCCCCcceeccHHHHHHHHhhCCCChHHHHHHHHHHHH----HHHhhHHHHhhhhh
Q 031121           18 VTKSQGFNLNYSNTIGYRQISQLVKSNGKRAFLVDTLQLVRGLEAQGVPSKQAEAITAAITE----VLNDSLENVAHTFV   93 (165)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~FDT~~fVk~Le~~Gft~eQAEai~~al~~----vl~~~le~~~~~lv   93 (165)
                      ...|-+++++++--..|..++.      +-.++||+-.=.-.+.=.||++.+|.-|+.++-+    ++|.--+.+..|.+
T Consensus       108 ~d~f~gig~~~~iEaflqYy~~------~VkVnfD~vSgI~~v~V~aF~p~eaq~Iaqailkqse~lIN~Ls~rAr~dt~  181 (372)
T COG3524         108 FDRFNGIGDRSEIEAFLQYYRD------KVKVNFDSVSGISTVNVTAFDPKEAQKIAQAILKQSEKLINQLSERARRDTV  181 (372)
T ss_pred             ccccccCCCCchHHHHHHHHHH------hheeecccccceeEEEEeecChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444455444443333333322      3468999998888899999999999999988765    34433333333333


Q ss_pred             hhhHHHHH--------------HHH--------------HHHHHHHHHHHHHhhhhhhhhhhHHHH-------HHHHHHH
Q 031121           94 SKGEMQKT--------------EMI--------------QEANLSKFKSEVQSSQEHHFSMLQRET-------EKLRSDI  138 (165)
Q Consensus        94 TK~dle~~--------------~~~--------------qkad~a~LR~Em~~~eksefa~Lr~e~-------ekL~~El  138 (165)
                      -=++.+=.              .|+              +..-++.|-.|+...+ .+...+++-.       --|++++
T Consensus       182 r~Ae~eV~~~eerv~kAs~~L~~yr~kngvfdp~~qaevq~~Lvs~Le~eL~~iq-aqL~tvks~m~~~nPqi~~Lkari  260 (372)
T COG3524         182 RFAEEEVQKAEERVKKASNDLTDYRIKNGVFDPKAQAEVQMSLVSKLEDELIVIQ-AQLDTVKSVMNPENPQIPGLKARI  260 (372)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHhhcCccChhhhhHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCCCCCcchhHHHHH
Confidence            22221111              111              1122333333333221 2333333332       2477788


Q ss_pred             HHHHHHHHHHHHhhccchhh
Q 031121          139 EKMRSELRYEIDKVTAGQRL  158 (165)
Q Consensus       139 ekLkq~LreEI~kl~a~vrL  158 (165)
                      +.|+++|-.|..++.++-.-
T Consensus       261 eSlrkql~qe~q~isag~~~  280 (372)
T COG3524         261 ESLRKQLLQEKQAISAGGSS  280 (372)
T ss_pred             HHHHHHHHHHHHHhcCCCCc
Confidence            88888888898888887653

>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins

Probab=91.98  E-value=1  Score=36.08  Aligned_cols=16  Identities=19%  Similarity=0.468  Sum_probs=6.2

Q ss_pred             HHHHHHHHHHHHHhhc
Q 031121          138 IEKMRSELRYEIDKVT  153 (165)
Q Consensus       138 lekLkq~LreEI~kl~  153 (165)
                      +..++.++..||..++
T Consensus       129 i~e~~~ki~~ei~~lr  144 (177)
T PF07798_consen  129 IQELNNKIDTEIANLR  144 (177)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3333333434443333

>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins

Probab=91.45  E-value=3.8  Score=30.48  Aligned_cols=59  Identities=17%  Similarity=0.362  Sum_probs=44.6

Q ss_pred             HhhhhhhhhHHHHHHHHH---HHHHHHHHHHHHhh-hhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 031121           88 VAHTFVSKGEMQKTEMIQ---EANLSKFKSEVQSS-QEHHFSMLQRETEKLRSDIEKMRSELR  146 (165)
Q Consensus        88 ~~~~lvTK~dle~~~~~q---kad~a~LR~Em~~~-eksefa~Lr~e~ekL~~ElekLkq~Lr  146 (165)
                      +.+..|+|++++.+.-..   ...++.+-+++..+ .+.+++.|+-+.+.++.++..|+.+++
T Consensus        27 l~~~~a~~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~   89 (106)
T PF10805_consen   27 LRRTYAKREDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQ   89 (106)
T ss_pred             HHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            446789999988764433   55677777777776 467788888888888888888888774

The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.

>PRK11546 zraP zinc resistance protein; Provisional

Probab=88.67  E-value=6.2  Score=31.33  Aligned_cols=73  Identities=15%  Similarity=0.292  Sum_probs=39.8

Q ss_pred             CChHHHHHHHHHHHHHHHhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHh--hhhhhhhhhHHHHHHHHHHHHHHH
Q 031121           65 VPSKQAEAITAAITEVLNDSLENVAHTFVSKGEMQKTEMIQEANLSKFKSEVQS--SQEHHFSMLQRETEKLRSDIEKMR  142 (165)
Q Consensus        65 ft~eQAEai~~al~~vl~~~le~~~~~lvTK~dle~~~~~qkad~a~LR~Em~~--~eksefa~Lr~e~ekL~~ElekLk  142 (165)
                      +|+||=.+ +..|.+-.......+.+++.+|.             ++|+..+..  -+...+.+|..|+..|+.++..++
T Consensus        44 LT~EQQa~-~q~I~~~f~~~t~~LRqqL~aKr-------------~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~e~r  109 (143)
T PRK11546         44 LTTEQQAA-WQKIHNDFYAQTSALRQQLVSKR-------------YEYNALLTANPPDSSKINAVAKEMENLRQSLDELR  109 (143)
T ss_pred             CCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            67777443 33333333333444444444443             233333322  233335666777778888888877


Q ss_pred             HHHHHHHHh
Q 031121          143 SELRYEIDK  151 (165)
Q Consensus       143 q~LreEI~k  151 (165)
                      -.+.-|+.|
T Consensus       110 ~~~~~~~~k  118 (143)
T PRK11546        110 VKRDIAMAE  118 (143)
T ss_pred             HHHHHHHHH
Confidence            777777776

>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []

Probab=86.79  E-value=2.6  Score=28.48  Aligned_cols=36  Identities=14%  Similarity=0.417  Sum_probs=26.8

Q ss_pred             HHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 031121          111 KFKSEVQSSQEHHFSMLQRETEKLRSDIEKMRSELRY  147 (165)
Q Consensus       111 ~LR~Em~~~eksefa~Lr~e~ekL~~ElekLkq~Lre  147 (165)
                      +|-+++..++ +.+..+|.|++.++.+++++++.+++
T Consensus         4 elEn~~~~~~-~~i~tvk~en~~i~~~ve~i~envk~   39 (55)
T PF05377_consen    4 ELENELPRIE-SSINTVKKENEEISESVEKIEENVKD   39 (55)
T ss_pred             HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444554443 44788999999999999999998865

In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].

>cd04766 HTH_HspR Helix-Turn-Helix DNA binding domain of the HspR transcription regulator

Probab=86.57  E-value=2.2  Score=30.28  Aligned_cols=26  Identities=19%  Similarity=0.253  Sum_probs=20.8

Q ss_pred             eccHHHHHHHHhh-CCCChHHHHHHHH
Q 031121           50 LVDTLQLVRGLEA-QGVPSKQAEAITA   75 (165)
Q Consensus        50 ~FDT~~fVk~Le~-~Gft~eQAEai~~   75 (165)
                      .+..+.+++.|.. .|||.+....++.
T Consensus        43 dv~~l~~i~~L~~d~g~~l~~i~~~l~   69 (91)
T cd04766          43 DIERLRRIQRLTQELGVNLAGVKRILE   69 (91)
T ss_pred             HHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence            4567789999988 9999988766654

Helix-turn-helix (HTH) transcription regulator HspR, N-terminal domain. Heat shock protein regulators (HspR) have been shown to regulate expression of specific regulons in response to high temperature or high osmolarity in Streptomyces and Helicobacter, respectively. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.

>PF09969 DUF2203: Uncharacterized conserved protein (DUF2203); InterPro: IPR018699 This family has no known function

Probab=86.25  E-value=9  Score=29.28  Aligned_cols=64  Identities=20%  Similarity=0.371  Sum_probs=39.0

Q ss_pred             CChHHHHHHHHHHHHHHHhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 031121           65 VPSKQAEAITAAITEVLNDSLENVAHTFVSKGEMQKTEMIQEANLSKFKSEVQSSQEHHFSMLQRETEKLRSDIEKMRSE  144 (165)
Q Consensus        65 ft~eQAEai~~al~~vl~~~le~~~~~lvTK~dle~~~~~qkad~a~LR~Em~~~eksefa~Lr~e~ekL~~ElekLkq~  144 (165)
                      ||.++|.++.-.++.++..-                  ...++++.++..+++.....-      +...++.+++.+.++
T Consensus         3 FTl~EA~~lLP~l~~~~~~~------------------~~~~~~~~~~~~~l~~~~~~~------~~~~~~~~~~~~~~~   58 (120)
T PF09969_consen    3 FTLEEANALLPLLRPILEEI------------------RELKAELEELEERLQELEDSL------EVNGLEAELEELEAR   58 (120)
T ss_pred             cCHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHhccchh------hHHhHHHHHHHHHHH
Confidence            89999999999988887552                  233455555555554432221      444555666666666


Q ss_pred             HHHHHHhh
Q 031121          145 LRYEIDKV  152 (165)
Q Consensus       145 LreEI~kl  152 (165)
                      +++-|+.+
T Consensus        59 ~~~~i~~i   66 (120)
T PF09969_consen   59 LRELIDEI   66 (120)
T ss_pred             HHHHHHHH
Confidence            65555544

>PRK10884 SH3 domain-containing protein; Provisional

Probab=86.23  E-value=4.9  Score=33.46  Aligned_cols=50  Identities=12%  Similarity=0.266  Sum_probs=29.4

Q ss_pred             HHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHH---HHHHHhhccchhhc
Q 031121          109 LSKFKSEVQSSQEHHFSMLQRETEKLRSDIEKMRSEL---RYEIDKVTAGQRLD  159 (165)
Q Consensus       109 ~a~LR~Em~~~eksefa~Lr~e~ekL~~ElekLkq~L---reEI~kl~a~vrLD  159 (165)
                      .+++...+.. .+..+..|++++.+|+.+++.+++++   +.+.+.++.+++++
T Consensus       120 ~~~l~~~~~~-~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~~~~  172 (206)
T PRK10884        120 TAEMQQKVAQ-SDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTIIMQ  172 (206)
T ss_pred             HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334433333 23445667888888888888777774   44556665555443

>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA

Probab=85.29  E-value=9.3  Score=33.69  Aligned_cols=69  Identities=16%  Similarity=0.358  Sum_probs=39.6

Q ss_pred             HHHHHhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhh-------------hhhhhhHHHHHHHHHHHHHHHHH
Q 031121           78 TEVLNDSLENVAHTFVSKGEMQKTEMIQEANLSKFKSEVQSSQE-------------HHFSMLQRETEKLRSDIEKMRSE  144 (165)
Q Consensus        78 ~~vl~~~le~~~~~lvTK~dle~~~~~qkad~a~LR~Em~~~ek-------------sefa~Lr~e~ekL~~ElekLkq~  144 (165)
                      ++-+.+--+...+.||+=++|+|....+.-.+.-||..|..++.             .++..++.....|+.+++.|+..
T Consensus        83 k~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~  162 (302)
T PF09738_consen   83 KDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQ  162 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55556666777889999999987544443333344444443332             23455555555555555555555


Q ss_pred             HH
Q 031121          145 LR  146 (165)
Q Consensus       145 Lr  146 (165)
                      |+
T Consensus       163 L~  164 (302)
T PF09738_consen  163 LK  164 (302)
T ss_pred             HH
Confidence            53

They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.

>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional

Probab=84.51  E-value=5.1  Score=37.08  Aligned_cols=38  Identities=24%  Similarity=0.217  Sum_probs=30.6

Q ss_pred             eeccHHHHHHHHhhCCCChHHHHHHHHHHHHHHHhhHH
Q 031121           49 FLVDTLQLVRGLEAQGVPSKQAEAITAAITEVLNDSLE   86 (165)
Q Consensus        49 ~~FDT~~fVk~Le~~Gft~eQAEai~~al~~vl~~~le   86 (165)
                      +.||+..=+-.|+-.+|+++.|..|.++|-+.-+.-++
T Consensus       196 V~~D~~sGIi~l~V~AF~PedA~~ia~aLL~~sE~~VN  233 (434)
T PRK15178        196 VAVDIQQGMLRLNVKARSAKQAEFFAQRILSFAEQHVN  233 (434)
T ss_pred             EeecCCCCeEEEEEEecCHHHHHHHHHHHHHHHHHHHH
Confidence            56888888888999999999999999998775444333

>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein

Probab=83.85  E-value=4.4  Score=32.15  Aligned_cols=54  Identities=24%  Similarity=0.408  Sum_probs=37.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHh-hhhhhhh---hhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031121           99 QKTEMIQEANLSKFKSEVQS-SQEHHFS---MLQRETEKLRSDIEKMRSELRYEIDKV  152 (165)
Q Consensus        99 e~~~~~qkad~a~LR~Em~~-~eksefa---~Lr~e~ekL~~ElekLkq~LreEI~kl  152 (165)
                      ....-+.+.++.++|.|+.. .-..||+   .++...+++..|++++++.+..+-.+.
T Consensus        39 ~~~~~~l~~Ei~~l~~E~~~iS~qDeFAkwaKl~Rk~~kl~~el~~~~~~~~~~~~~~   96 (161)
T PF04420_consen   39 SKEQRQLRKEILQLKRELNAISAQDEFAKWAKLNRKLDKLEEELEKLNKSLSSEKSSF   96 (161)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTS-TTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445668899999999976 3445565   677777888888888777766554433

The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.

>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication

Probab=81.79  E-value=11  Score=28.25  Aligned_cols=40  Identities=23%  Similarity=0.246  Sum_probs=26.9

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 031121          103 MIQEANLSKFKSEVQSSQEHHFSMLQRETEKLRSDIEKMRSELRYEID  150 (165)
Q Consensus       103 ~~qkad~a~LR~Em~~~eksefa~Lr~e~ekL~~ElekLkq~LreEI~  150 (165)
                      -..-.++++||..|        ..|-.||..|+.|-+.|+.+|.+.-.
T Consensus        18 ~~l~~~~~~LK~~~--------~~l~EEN~~L~~EN~~Lr~~l~~~~~   57 (107)
T PF06156_consen   18 GQLLEELEELKKQL--------QELLEENARLRIENEHLRERLEELEQ   57 (107)
T ss_pred             HHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            33445566666666        45566888888888888888766543

SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=81.62  E-value=22  Score=27.35  Aligned_cols=49  Identities=6%  Similarity=0.211  Sum_probs=26.4

Q ss_pred             hHHHHHHHHHHHHHHHhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 031121           67 SKQAEAITAAITEVLNDSLENVAHTFVSKGEMQKTEMIQEANLSKFKSEVQSS  119 (165)
Q Consensus        67 ~eQAEai~~al~~vl~~~le~~~~~lvTK~dle~~~~~qkad~a~LR~Em~~~  119 (165)
                      ..-...|+.+|-+++..    ...++-.++++........+++..|...+.-+
T Consensus        30 ~~~~~~vin~i~~Ll~~----~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL   78 (151)
T PF11559_consen   30 EDNDVRVINCIYDLLQQ----RDRDMEQREDLSDKLRRLRSDIERLQNDVERL   78 (151)
T ss_pred             cccHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            33344556666555543    23566667766665555555555555544433

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>PRK00888 ftsB cell division protein FtsB; Reviewed

Probab=81.42  E-value=5.3  Score=29.73  Aligned_cols=30  Identities=17%  Similarity=0.292  Sum_probs=19.9

Q ss_pred             hhhhhhHHHHHHHHHHHHHHHH--HHHHHHHh
Q 031121          122 HHFSMLQRETEKLRSDIEKMRS--ELRYEIDK  151 (165)
Q Consensus       122 sefa~Lr~e~ekL~~ElekLkq--~LreEI~k  151 (165)
                      .+.+.++.++++|+.|++.|+.  ..-+|+.+
T Consensus        41 ~e~~~l~~~n~~L~~eI~~L~~~~dyiEe~AR   72 (105)
T PRK00888         41 QTNAKLKARNDQLFAEIDDLKGGQEAIEERAR   72 (105)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHH
Confidence            4446677788888888888876  34444443

>PRK13182 racA polar chromosome segregation protein; Reviewed

Probab=80.76  E-value=18  Score=29.41  Aligned_cols=22  Identities=14%  Similarity=0.222  Sum_probs=18.5

Q ss_pred             eccHHHHHHHHhhCCCChHHHH
Q 031121           50 LVDTLQLVRGLEAQGVPSKQAE   71 (165)
Q Consensus        50 ~FDT~~fVk~Le~~Gft~eQAE   71 (165)
                      ..+-+.|++.|...|||-++-.
T Consensus        42 dl~~L~~I~~l~~~Gm~i~~i~   63 (175)
T PRK13182         42 DLQLLEYVKSQIEEGQNMQDTQ   63 (175)
T ss_pred             HHHHHHHHHHHHHcCCCHHHHH
Confidence            3578899999999999988753

>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS

Probab=80.09  E-value=17  Score=25.71  Aligned_cols=42  Identities=17%  Similarity=0.233  Sum_probs=28.2

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 031121          105 QEANLSKFKSEVQSSQEHHFSMLQRETEKLRSDIEKMRSELR  146 (165)
Q Consensus       105 qkad~a~LR~Em~~~eksefa~Lr~e~ekL~~ElekLkq~Lr  146 (165)
                      .++.+.+.=+.|....|.||..++....+++..++.|+.+|.
T Consensus        33 ~r~~l~~~l~kldlVtREEFd~q~~~L~~~r~kl~~LEarl~   74 (79)
T PF04380_consen   33 IRARLQSALSKLDLVTREEFDAQKAVLARTREKLEALEARLA   74 (79)
T ss_pred             HHHHHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444445556667777777788888888888887764

BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	165
4h22_A	103	Leucine-rich repeat flightless-interacting protei;	86.68
3lay_A	175	Zinc resistance-associated protein; salmonella typ	85.56
1g6u_A	48	Domain swapped dimer; designed three helix bundle,	83.76
3sja_C	65	Golgi to ER traffic protein 1; coiled-coil, recept	82.29
4dzn_A	33	Coiled-coil peptide CC-PIL; de novo protein; HET:	81.36

>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}

Probab=86.68  E-value=5  Score=29.27  Aligned_cols=54  Identities=13%  Similarity=0.225  Sum_probs=27.5

Q ss_pred             HHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHH
Q 031121           86 ENVAHTFVSKGEMQKTEMIQEANLSKFKSEVQSSQEHHFSMLQRETEKLRSDIEK  140 (165)
Q Consensus        86 e~~~~~lvTK~dle~~~~~qkad~a~LR~Em~~~eksefa~Lr~e~ekL~~Elek  140 (165)
                      +...+.|||=++|.|....+.=.+.-||..|..++ ..++.++.++....+|++.
T Consensus         9 EKyrKAMVsnAQLDNEKsal~YqVdlLKD~LEe~e-E~~aql~Re~~eK~re~e~   62 (103)
T 4h22_A            9 EKYKKAMVSNAQLDNEKTNFMYQVDTLKDMLLELE-EQLAESRRQYEEKNKEFER   62 (103)
T ss_dssp             CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence            45567889999988754444333444454444332 2244444444433333333

>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}

Probab=85.56  E-value=9  Score=29.99  Aligned_cols=33  Identities=12%  Similarity=0.277  Sum_probs=26.5

Q ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031121          120 QEHHFSMLQRETEKLRSDIEKMRSELRYEIDKV  152 (165)
Q Consensus       120 eksefa~Lr~e~ekL~~ElekLkq~LreEI~kl  152 (165)
                      +...+..|-.|+..|+.++...+.+++.|+.|-
T Consensus       111 DeakI~aL~~Ei~~Lr~qL~~~R~k~~~em~Ke  143 (175)
T 3lay_A          111 DTAKINAVAKEMESLGQKLDEQRVKRDVAMAQA  143 (175)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            556677788888888888888888888888775

>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1

Probab=83.76  E-value=3.6  Score=25.50  Aligned_cols=37  Identities=27%  Similarity=0.476  Sum_probs=23.0

Q ss_pred             HHHHHHHHHhhhhhh-----hhhhHHHHHHHHHHHHHHHHHH
Q 031121          109 LSKFKSEVQSSQEHH-----FSMLQRETEKLRSDIEKMRSEL  145 (165)
Q Consensus       109 ~a~LR~Em~~~ekse-----fa~Lr~e~ekL~~ElekLkq~L  145 (165)
                      ++.||+|+|.+.+.-     .+.|.+|...|...+..|+.+|
T Consensus         2 laalkselqalkkegfspeelaaleselqalekklaalkskl   43 (48)
T 1g6u_A            2 LAALKSELQALKKEGFSPEELAALESELQALEKKLAALKSKL   43 (48)
T ss_dssp             HHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456777777766544     4566666666666666666555

>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C

Probab=82.29  E-value=3.3  Score=27.86  Aligned_cols=45  Identities=16%  Similarity=0.275  Sum_probs=33.7

Q ss_pred             HHHHHHHHHHHHHHhhhh-hh---hhhhHHHHHHHHHHHHHHHHHHHHH
Q 031121          104 IQEANLSKFKSEVQSSQE-HH---FSMLQRETEKLRSDIEKMRSELRYE  148 (165)
Q Consensus       104 ~qkad~a~LR~Em~~~ek-se---fa~Lr~e~ekL~~ElekLkq~LreE  148 (165)
                      +.+..+-+||.|+....- .+   ++.|+...++|..||+++++.|.-|
T Consensus        10 ~l~~E~~~lk~E~~stSaQDeFAKWaKL~Rk~DKl~~ele~l~~~l~~~   58 (65)
T 3sja_C           10 AKVKERHELKEFNNSISAQDNYAKWTKNNRKLDSLDKEINNLKDEIQSE   58 (65)
T ss_dssp             HHHHHHHHHHHHHTTSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            446778888888866433 33   4578888999999999998887654

>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B

Probab=81.36  E-value=3.5  Score=23.78  Aligned_cols=20  Identities=20%  Similarity=0.469  Sum_probs=11.3

Q ss_pred             hhhhHHHHHHHHHHHHHHHH
Q 031121          124 FSMLQRETEKLRSDIEKMRS  143 (165)
Q Consensus       124 fa~Lr~e~ekL~~ElekLkq  143 (165)
                      ++.|+.|+..|+-||..|+|
T Consensus        11 iaalkkeiaalkfeiaalkq   30 (33)
T 4dzn_A           11 IAALKKEIAALKFEIAALKQ   30 (33)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHc
Confidence            34555555556666666555

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	165
d1cv8a_	173	d.3.1.1 (A:) Staphopain StpA {Staphylococcus aureu	0.004

>d1cv8a_ d.3.1.1 (A:) Staphopain StpA {Staphylococcus aureus [TaxId: 1280]} Length = 173

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Staphopain StpA
species: Staphylococcus aureus [TaxId: 1280]

 Score = 33.8 bits (77), Expect = 0.004
 Identities = 11/48 (22%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 16  VRVTKSQGFNLNYSNTIG-YRQISQLVKSNGKRAFLVDTLQLVRGLEA 62
           +   ++QG +    N +  Y ++  L K+N   A L   ++   G+ A
Sbjct: 70  IYFGQTQGRSPQLLNRMTTYNEVDNLTKNNKGIAILGSRVESRNGMHA 117

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00