Citrus Sinensis ID: 031142


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-----
MKFSSEIQGFLGRLISRKQAYWNLSSCFEWNALLQPKILSFLCSHLDISLTTGERLNHSEVFSAIQNYLSIKASKHAARFKADVVEDSQSLVLSMEDKEEVTDEFERVNVWWELGKNISRREFQFSIYPAAEEKRYYKLTFHKRDRELIPGSYVNHVLDGGRPSQ
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEccccccccHHHHHHHHHHccccccccccEEEEEccccccEEEEcccccEEEEEEccEEEEEEEccccccccccccccccccccEEEEEEEcccccccccccccHHHHHcccccc
cHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccEEEEEEEccccccHHHHHHHHHHHHHHHccHcccEEEEEcccccccEEEEEccccEEEEEEccEEEEEEEEEEcccccccccccccccccEEEEEEEcHHHHHHHHHHHHHHHHHHHHHcc
MKFSSEIQGFLGRLISRKQAYWNLSSCFEWNALLQPKILSFLCSHLdislttgerlnhSEVFSAIQNYLSIKASKHAARFKADVVEDSQSLVLsmedkeevtdeFERVNVWWELGknisrrefqfsiypaaeEKRYYKLTFhkrdrelipgsyvnhvldggrpsq
MKFSSEIQGFLGRLISRKQAYWNLSSCFEWNALLQPKILSFLCSHLDISLTTGERLNHSEVFSAIQNYLSIKASKHAARFKADVVEDSQSLVlsmedkeevtdeferVNVWWelgknisrrefqfsiypaaeEKRYYKLTFhkrdrelipgsyvnhvldggrpsq
MKFSSEIQGFLGRLISRKQAYWNLSSCFEWNALLQPKILSFLCSHLDISLTTGERLNHSEVFSAIQNYLSIKASKHAARFKADVVEDSQSLVLSMEDKEEVTDEFERVNVWWELGKNISRREFQFSIYPAAEEKRYYKLTFHKRDRELIPGSYVNHVLDGGRPSQ
******IQGFLGRLISRKQAYWNLSSCFEWNALLQPKILSFLCSHLDISLTTGERLNHSEVFSAIQNYLSIKASKHAARFKADVVE****LVL*******VTDEFERVNVWWELGKNISRREFQFSIYPAAEEKRYYKLTFHKRDRELIPGSYVNHVL*******
***SSEIQGFLGRLISRKQAYWNLSSCFEWNALLQPKILSFLCSHLDISLTTGERLNHSEVFSAIQNYLSIKAS*********************EDKEEVTDEFERVNVWWE*********************RYYKLTFHKRDRELIPGSYVNHVLDGGRP**
********GFLGRLISRKQAYWNLSSCFEWNALLQPKILSFLCSHLDISLTTGERLNHSEVFSAIQNYLSIKASKHAARFKADVVEDSQSLVL**********EFERVNVWWELGKNISRREFQFSIYPAAEEKRYYKLTFHKRDRELIPGSYVNHVLDGGRPSQ
*KFSSEIQGFLGRLISRKQAYWNLSSCFEWNALLQPKILSFLCSHLDISLTTGERLNHSEVFSAIQNYLSIKASKHAARFKADVVEDSQSLVLSMEDKEEVTDEFERVNVWWELGKNISRREFQFSIYPAAEEKRYYKLTFHKRDRELIPGSYVNHVLDGGRPSQ
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MKFSSEIQGFLGRLISRKQAYWNLSSCFEWNALLQPKILSFLCSHLDISLTTGERLNHSEVFSAIQNYLSIKASKHAARFKADVVEDSQSLVLSMEDKEEVTDEFERVNVWWELGKNISRREFQFSIYPAAEEKRYYKLTFHKRDRELIPGSYVNHVLDGGRPSQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query165
359488873 520 PREDICTED: uncharacterized protein LOC10 0.757 0.240 0.531 6e-31
356572218 482 PREDICTED: probable mitochondrial chaper 0.672 0.230 0.580 7e-29
449528419 343 PREDICTED: uncharacterized protein LOC10 0.757 0.364 0.492 2e-28
224145818 483 predicted protein [Populus trichocarpa] 0.751 0.256 0.519 3e-28
225452605 521 PREDICTED: ATP-dependent zinc metallopro 0.757 0.239 0.507 6e-28
255552796 523 ATP binding protein, putative [Ricinus c 0.757 0.239 0.484 9e-28
224076142 483 predicted protein [Populus trichocarpa] 0.757 0.258 0.531 2e-27
449532958 311 PREDICTED: uncharacterized protein LOC10 0.757 0.401 0.484 2e-27
359488753 528 PREDICTED: ATP-dependent zinc metallopro 0.751 0.234 0.503 3e-27
225452601 526 PREDICTED: uncharacterized protein LOC10 0.757 0.237 0.484 4e-27
>gi|359488873|ref|XP_002275941.2| PREDICTED: uncharacterized protein LOC100252565 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  138 bits (348), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 68/128 (53%), Positives = 93/128 (72%), Gaps = 3/128 (2%)

Query: 37  KILSFLCSHLDISLT--TGERLNHSEVFSAIQNYLSIKASKHAARFKADVVEDSQSLVLS 94
           K++SF+  ++ I+    + +R   SE + AI+NYLS+ AS  A R KADV++DSQSLVLS
Sbjct: 43  KLVSFVYPYIQITFQEFSEDRFKRSEAYVAIENYLSVNASTRAKRLKADVIKDSQSLVLS 102

Query: 95  MEDKEEVTDEFERVNVWWELGKNISRREFQFSIYPAAEEKRYYKLTFHKRDRELIPGSYV 154
           M+D+EEVTDEF+ V +WW   KN  + +  FS YPAA+EKR+YKLTFHK  RE+  GSY+
Sbjct: 103 MDDREEVTDEFKGVKLWWASHKNPPKTQ-TFSFYPAADEKRFYKLTFHKNHREMFVGSYL 161

Query: 155 NHVLDGGR 162
           NHV+  G+
Sbjct: 162 NHVMKEGK 169




Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356572218|ref|XP_003554267.1| PREDICTED: probable mitochondrial chaperone BCS1-B-like [Glycine max] Back     alignment and taxonomy information
>gi|449528419|ref|XP_004171202.1| PREDICTED: uncharacterized protein LOC101232757, partial [Cucumis sativus] Back     alignment and taxonomy information
>gi|224145818|ref|XP_002325775.1| predicted protein [Populus trichocarpa] gi|222862650|gb|EEF00157.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225452605|ref|XP_002275965.1| PREDICTED: ATP-dependent zinc metalloprotease FtsH-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|255552796|ref|XP_002517441.1| ATP binding protein, putative [Ricinus communis] gi|223543452|gb|EEF44983.1| ATP binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224076142|ref|XP_002304895.1| predicted protein [Populus trichocarpa] gi|222847859|gb|EEE85406.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449532958|ref|XP_004173444.1| PREDICTED: uncharacterized protein LOC101232752, partial [Cucumis sativus] Back     alignment and taxonomy information
>gi|359488753|ref|XP_002275823.2| PREDICTED: ATP-dependent zinc metalloprotease FtsH-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|225452601|ref|XP_002281222.1| PREDICTED: uncharacterized protein LOC100257701 [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query165
TAIR|locus:2178067 514 AATP1 "AAA-ATPase 1" [Arabidop 0.775 0.249 0.412 1.1e-24
TAIR|locus:2095512 500 AT3G28580 [Arabidopsis thalian 0.666 0.22 0.486 2e-24
TAIR|locus:2098658 530 AT3G28510 [Arabidopsis thalian 0.757 0.235 0.367 5.6e-18
TAIR|locus:2095467257 AT3G28560 "AT3G28560" [Arabido 0.957 0.614 0.316 1.6e-17
TAIR|locus:2098648 510 AT3G28540 [Arabidopsis thalian 0.896 0.290 0.325 5.2e-14
TAIR|locus:2095532 477 AT3G28600 [Arabidopsis thalian 0.696 0.241 0.325 3.4e-13
TAIR|locus:2095537 474 AT3G28610 [Arabidopsis thalian 0.666 0.232 0.328 2.5e-12
TAIR|locus:2098638 478 AT3G28520 [Arabidopsis thalian 0.636 0.219 0.378 3.2e-12
TAIR|locus:2178057 470 AT5G40000 [Arabidopsis thalian 0.630 0.221 0.322 1.4e-11
TAIR|locus:505006520 506 AT4G25835 [Arabidopsis thalian 0.715 0.233 0.306 3.2e-10
TAIR|locus:2178067 AATP1 "AAA-ATPase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 287 (106.1 bits), Expect = 1.1e-24, P = 1.1e-24
 Identities = 54/131 (41%), Positives = 85/131 (64%)

Query:    34 LQPKILSFLCSHLDISLT--TGERLNHSEVFSAIQNYLSIKASKHAARFKADVVEDSQSL 91
             L   ++ F+  ++ I+    +GER   S+V+ AIQ+YLS  +S  A +  A+ ++ ++S+
Sbjct:    40 LAQSLIGFIYPYIQITFHEYSGERFKRSDVYDAIQSYLSKDSSSRAKKLTANTIKGNKSI 99

Query:    92 VLSMEDKEEVTDEFERVNVWWELGKNISRREFQFSIYPAAEEKRYYKLTFHKRDRELIPG 151
             +LSM+D EE+TDEF+ V VWW+  K+ S      S YP A+E R+Y L FH+RDRE+I  
Sbjct:   100 ILSMDDHEEITDEFQGVKVWWQSKKHQSESR-AISFYPKADESRFYMLKFHRRDREVITK 158

Query:   152 SYVNHVLDGGR 162
              Y+NHV+  G+
Sbjct:   159 KYLNHVISEGK 169




GO:0000166 "nucleotide binding" evidence=IEA
GO:0005524 "ATP binding" evidence=IEA;ISS
GO:0005886 "plasma membrane" evidence=ISM
GO:0016887 "ATPase activity" evidence=ISS;IDA
GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA
GO:0005739 "mitochondrion" evidence=IDA
GO:0010154 "fruit development" evidence=IMP
GO:0010431 "seed maturation" evidence=IMP
GO:0001666 "response to hypoxia" evidence=RCA
GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA
GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA
GO:0005783 "endoplasmic reticulum" evidence=IDA
TAIR|locus:2095512 AT3G28580 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2098658 AT3G28510 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2095467 AT3G28560 "AT3G28560" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2098648 AT3G28540 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2095532 AT3G28600 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2095537 AT3G28610 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2098638 AT3G28520 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2178057 AT5G40000 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:505006520 AT4G25835 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
GSVIVG00020827001
SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (518 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query165
pfam14363100 pfam14363, AAA_assoc, Domain associated at C-termi 2e-16
>gnl|CDD|222710 pfam14363, AAA_assoc, Domain associated at C-terminal with AAA Back     alignment and domain information
 Score = 69.9 bits (172), Expect = 2e-16
 Identities = 28/65 (43%), Positives = 39/65 (60%), Gaps = 2/65 (3%)

Query: 54  ERLNHSEVFSAIQNYLSIKASKHAARFKADVVEDSQ--SLVLSMEDKEEVTDEFERVNVW 111
           +  + ++++ A + YLS K S  A R KA   + S+  SLVLS++D EEVTD FE V VW
Sbjct: 34  DGFSRNQLYDAAEAYLSTKISPSARRLKASKAKKSKNSSLVLSLDDGEEVTDVFEGVKVW 93

Query: 112 WELGK 116
           W    
Sbjct: 94  WTSVV 98


This domain is found in association with the AAA family, pfam00004. Length = 100

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 165
PF1436398 AAA_assoc: Domain associated at C-terminal with AA 100.0
KOG0743 457 consensus AAA+-type ATPase [Posttranslational modi 99.98
>PF14363 AAA_assoc: Domain associated at C-terminal with AAA Back     alignment and domain information
Probab=100.00  E-value=1.4e-33  Score=204.21  Aligned_cols=97  Identities=34%  Similarity=0.461  Sum_probs=92.5

Q ss_pred             hcchhhHHHHHHHhHhhHhh-ccCCceEEEEecCCCCCcchHHHHHHHHhhccccccccceeeeecCCCcceEEecCCCc
Q 031142           21 YWNLSSCFEWNALLQPKILS-FLCSHLDISLTTGERLNHSEVFSAIQNYLSIKASKHAARFKADVVEDSQSLVLSMEDKE   99 (165)
Q Consensus        21 ~~~~~~~~~~i~~~~~~l~~-~~s~~~ti~I~e~~~~~~N~ly~Aa~~YLstk~s~~a~rL~~~~~~~~~~~~lsld~~e   99 (165)
                      ++|.+ |++++.++++++++ +++||+||+|+|.+|+++||+|+|||+||+++++++++||++++++++++++|+|++||
T Consensus         1 ~~P~~-lr~~~~~~~~~~~~~~~s~~~ti~I~E~~g~~~N~ly~a~~~YL~s~~s~~a~rL~~~~~~~~~~~~l~l~~~e   79 (98)
T PF14363_consen    1 LLPHE-LRSYLRSLLRRLFSSRFSPYLTIVIPEFDGLSRNELYDAAQAYLSSKISPSARRLKASKSKNSKNLVLSLDDGE   79 (98)
T ss_pred             CCCHH-HHHHHHHHHHHHHhccCCCcEEEEEEeCCCccccHHHHHHHHHHhhccCcccceeeecccCCCCceEEecCCCC
Confidence            46887 99999999988776 99999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeEeccCCeEEEEEEeeec
Q 031142          100 EVTDEFERVNVWWELGKNI  118 (165)
Q Consensus       100 ~V~D~F~Gv~v~W~~~~~~  118 (165)
                      +|+|+|+||+|||++++++
T Consensus        80 ~V~D~F~Gv~v~W~~~~~e   98 (98)
T PF14363_consen   80 EVVDVFEGVKVWWSSVCTE   98 (98)
T ss_pred             EEEEEECCEEEEEEEEccC
Confidence            9999999999999999864



>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query165
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 38.3 bits (88), Expect = 8e-04
 Identities = 22/153 (14%), Positives = 56/153 (36%), Gaps = 30/153 (19%)

Query: 13  RLISRKQAYWNLSSCFEWNALLQPKILSFLCSHLDISLTTGERLNHSEVFSAIQNYLS-- 70
            ++     Y N+   F+ + L+ P +  +  SH+   L   E      +F  +  +L   
Sbjct: 448 SIVDH---Y-NIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMV--FLDFR 501

Query: 71  -----IKASKHAARFKADVVEDSQSLVLSMEDKEEVTD---EFER-----VNVWWELGKN 117
                I+    A      ++   Q L      K  + D   ++ER     ++   ++ +N
Sbjct: 502 FLEQKIRHDSTAWNASGSILNTLQQLKFY---KPYICDNDPKYERLVNAILDFLPKIEEN 558

Query: 118 ISRREF----QFSIYPAAEEKRYYKLTFHKRDR 146
           +   ++    + ++    E++  ++    +  R
Sbjct: 559 LICSKYTDLLRIALMA--EDEAIFEEAHKQVQR 589


Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00