Citrus Sinensis ID: 031177

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160----
Protein Sequence
MLKITSKGFFKKSIIMESQKKKLVMGFFGFLLTIISFASNVEAWTGEIHGRVVCDVCGDSSIGPEDHVLEGAEVAVLCITKSGEVLNYQAFTNAKGMYTVAETMPESDRWDACLARPISSFHDHCSHLGEGSAGVKFTYNHPSGYFHTVKPFVYRHASVPTYCI
Secondary Structure (PSIPRED)
ccEEcccccEEEEEEEEEHHHHHHHHHHHHHHHHHHHcccccccccEEEEEEEcccccccccccccEEEcccEEEEEcccccccEEEEEEEccccccEEEEEEcccccccccEEEEEccccccccccccccccEEEEEEEccccEEEEEccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEEEEEEccccccccccccccccccEEEEEEEccccEEEEEEEEEccccEEEEEccccccccHHHccccccccccccccccccccccEEEEEccccccEEEEccEEEcccccccccc
Coil and Loop (DISEMBL)
mlkitskgffkkSIIMESQKKKLVMGFFGFLLTIISFASNVeawtgeihgrvvcdvcgdssigpedhvleGAEVAVLCITKsgevlnyqaftnakgmytvaetmpesdrwdaclarpissfhdhcshlgegsagvkftynhpsgyfhtvkpfvyrhasvptyci
Flexible Loop (DISEMBL)
mlkitskgffkksiiMESQKKKLVMGFFGFLLTIISFASNVEAWTGEIHGRVVCDVCGDSSIGPEDHVLEGAEVAVLCITKSGEVLNYQAFTNAKGMYTVAETMPESDRWDACLARPISSFHDHCSHLGEGSAGVKFTYNHPSGYFHTVKPFVYRHASVPTYCI
Low Complexity Region (SEG)
MLKITSKGFFKKSIIMESQKKKLVMGFFGFLLTIISFASNVEAWTGEIHGRVVCDVCGDSSIGPEDHVLEGAEVAVLCITKSGEVLNYQAFTNAKGMYTVAETMPESDRWDACLARPISSFHDHCSHLGEGSAGVKFTYNHPSGYFHTVKPFVYRHASVPTYCI
Disordered region (IsUnstruct)
********FFKKSIIMESQKKKLVMGFFGFLLTIISFASNVEAWTGEIHGRVVCDVCGDSSIGPEDHVLEGAEVAVLCITKSGEVLNYQAFTNAKGMYTVAETMPESDRWDACLARPISSFHDHCSHLGEGSAGVKFTYNHPSGYFHTVKPFVYRHASVPTYC*
Disordered Region (DISOPRED)
*******GFFKKSIIMESQKKKLVMGFFGFLLTIISFASNVEAWTGEIHGRVVCDVCGDSSIGPEDHVLEGAEVAVLCITKSGEVLNYQAFTNAKGMYTVAETMPESDRWDACLARPIS*****************FTYNHPSGYFHTVKPFVYRHASVPTYCI
Disordered Region (DISEMBL)
MLKITSKGFFKKSIIMESQKKKLVMGFFGFLLTIISFASNVEAWTGEIHGRVVCDVCGDSSIGPEDHVLEGAEVAVLCITKSGEVLNYQAFTNAKGMYTVAETMPESDRWDACLARPISSFHDHCSHLGEGSAGVKFTYNHPSGYFHTVKPFVYRHASVPTYCI
Disordered Region (DISPRO)
*LKITSKGFFKKSIIMESQKKKLVMGFFGFLLTIISFASNVEAWTGEIHGRVVCDVCGDSSIGPEDHVLEGAEVAVLCITKSGEVLNYQAFTNAKGMYTVAETMPESDRWDACLARPISSFHDHCSHLGEGSAGVKFTYNHPSGYFHTVKPFVYRHASVPTYCI
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLKITSKGFFKKSIIMESQKKKLVMGFFGFLLTIISFASNVEAWTGEIHGRVVCDVCGDSSIGPEDHVLEGAEVAVLCITKSGEVLNYQAFTNAKGMYTVAETMPESDRWDACLARPISSFHDHCSHLGEGSAGVKFTYNHPSGYFHTVKPFVYRHASVPTYCI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	164
255563951	147	conserved hypothetical protein [Ricinus	0.884	0.986	0.807	3e-66
224115284	146	predicted protein [Populus trichocarpa]	0.890	1.0	0.805	1e-63
225461030	149	PREDICTED: uncharacterized protein LOC10	0.908	1.0	0.738	2e-63
388510074	145	unknown [Lotus japonicus]	0.884	1.0	0.765	6e-63
351722339	144	uncharacterized protein LOC100527393 pre	0.871	0.993	0.801	1e-62
118486654	146	unknown [Populus trichocarpa]	0.890	1.0	0.798	1e-62
357459529	147	hypothetical protein MTR_3g051110 [Medic	0.896	1.0	0.731	3e-61
351727363	144	uncharacterized protein LOC100305581 pre	0.780	0.888	0.851	4e-61
297737406	129	unnamed protein product [Vitis vinifera]	0.780	0.992	0.820	2e-59
449515267	160	PREDICTED: uncharacterized LOC101212998	0.786	0.806	0.813	2e-59

>gi|255563951|ref|XP_002522975.1| conserved hypothetical protein [Ricinus communis] gi|223537787|gb|EEF39405.1| conserved hypothetical protein [Ricinus communis]

 Score =  256 bits (653), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 122/151 (80%), Positives = 132/151 (87%), Gaps = 6/151 (3%)

Query: 16  MESQK--KKLVMGFFGFLLTIISFASNVEAWTGEIHGRVVCDVCGDSSIGPEDHVLEGAE 73
           MESQ   + ++MGF   +LT+    S V+AWTGEIHGRVVCDVCGDSSIGPEDHVLEGAE
Sbjct: 1   MESQSPTRNVMMGFLIIILTV----STVKAWTGEIHGRVVCDVCGDSSIGPEDHVLEGAE 56

Query: 74  VAVLCITKSGEVLNYQAFTNAKGMYTVAETMPESDRWDACLARPISSFHDHCSHLGEGSA 133
           VAVLCITK+GEVLNYQAFTNAKG+YTVAETMPESDRWDACLARPISSFH+HC+HLG GS 
Sbjct: 57  VAVLCITKAGEVLNYQAFTNAKGIYTVAETMPESDRWDACLARPISSFHEHCTHLGNGST 116

Query: 134 GVKFTYNHPSGYFHTVKPFVYRHASVPTYCI 164
           GVKFTYN PSGY H VKPFVYR A VPTYCI
Sbjct: 117 GVKFTYNRPSGYSHAVKPFVYRPAEVPTYCI 147

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224115284|ref|XP_002316991.1| predicted protein [Populus trichocarpa] gi|118481320|gb|ABK92603.1| unknown [Populus trichocarpa] gi|222860056|gb|EEE97603.1| predicted protein [Populus trichocarpa]

 Score =  247 bits (631), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 120/149 (80%), Positives = 130/149 (87%), Gaps = 3/149 (2%)

Query: 16  MESQKKKLVMGFFGFLLTIISFASNVEAWTGEIHGRVVCDVCGDSSIGPEDHVLEGAEVA 75
           M+SQ +KLV G F  LL+ I F S V+AWTGEIHGRVVCDVCGDSSIGPEDHVLEGAEVA
Sbjct: 1   MDSQLRKLVAGLF--LLSAI-FVSGVKAWTGEIHGRVVCDVCGDSSIGPEDHVLEGAEVA 57

Query: 76  VLCITKSGEVLNYQAFTNAKGMYTVAETMPESDRWDACLARPISSFHDHCSHLGEGSAGV 135
           VLCITKSGEVLNYQAFTN KG+YTVAETM ESDRWDACLARPISSFH+HC+ LGE S GV
Sbjct: 58  VLCITKSGEVLNYQAFTNDKGIYTVAETMSESDRWDACLARPISSFHEHCTQLGETSTGV 117

Query: 136 KFTYNHPSGYFHTVKPFVYRHASVPTYCI 164
           KF+YN PSG+ H VKPFVY  A+VPTYCI
Sbjct: 118 KFSYNRPSGFSHRVKPFVYSPANVPTYCI 146

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225461030|ref|XP_002281236.1| PREDICTED: uncharacterized protein LOC100252146 [Vitis vinifera]

 Score =  246 bits (629), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 110/149 (73%), Positives = 130/149 (87%)

Query: 16  MESQKKKLVMGFFGFLLTIISFASNVEAWTGEIHGRVVCDVCGDSSIGPEDHVLEGAEVA 75
           ME+Q+K+ V+      + +  F S V AWTGEIHGRVVCDVCGDSSIGPEDH+LEGAEVA
Sbjct: 1   MEAQRKRKVVMVLTLFVMMTMFFSCVRAWTGEIHGRVVCDVCGDSSIGPEDHILEGAEVA 60

Query: 76  VLCITKSGEVLNYQAFTNAKGMYTVAETMPESDRWDACLARPISSFHDHCSHLGEGSAGV 135
           VLCITKSGEVLNYQAFT+AKG+Y VAETMPESDRWDACLARPISSFH+HC+HLG+G++G+
Sbjct: 61  VLCITKSGEVLNYQAFTDAKGIYRVAETMPESDRWDACLARPISSFHEHCTHLGDGTSGI 120

Query: 136 KFTYNHPSGYFHTVKPFVYRHASVPTYCI 164
           KFTY+ PSGY HT++PFVYR A+ P YC+
Sbjct: 121 KFTYSRPSGYSHTIRPFVYRPANAPLYCV 149

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388510074|gb|AFK43103.1| unknown [Lotus japonicus]

 Score =  245 bits (625), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 114/149 (76%), Positives = 128/149 (85%), Gaps = 4/149 (2%)

Query: 16  MESQKKKLVMGFFGFLLTIISFASNVEAWTGEIHGRVVCDVCGDSSIGPEDHVLEGAEVA 75
           ME+  +K+VM     L +    A  V AWTGEIHGRVVCDVCGDSS+GPEDHVLEGAEVA
Sbjct: 1   MEAMNQKMVMSLILLLFS----ALGVSAWTGEIHGRVVCDVCGDSSLGPEDHVLEGAEVA 56

Query: 76  VLCITKSGEVLNYQAFTNAKGMYTVAETMPESDRWDACLARPISSFHDHCSHLGEGSAGV 135
           VLCITKSGEVLNYQAFT+AKG+YTVAETMPESDRWDACLARPISSFH+HC+HLG+GS GV
Sbjct: 57  VLCITKSGEVLNYQAFTDAKGIYTVAETMPESDRWDACLARPISSFHEHCTHLGQGSPGV 116

Query: 136 KFTYNHPSGYFHTVKPFVYRHASVPTYCI 164
           KF+YNHPSG  H+V+ F+YR  SVPTYCI
Sbjct: 117 KFSYNHPSGRSHSVRTFIYRPVSVPTYCI 145

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722339|ref|NP_001235449.1| uncharacterized protein LOC100527393 precursor [Glycine max] gi|255632252|gb|ACU16484.1| unknown [Glycine max]

 Score =  244 bits (623), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 117/146 (80%), Positives = 131/146 (89%), Gaps = 3/146 (2%)

Query: 19  QKKKLVMGFFGFLLTIISFASNVEAWTGEIHGRVVCDVCGDSSIGPEDHVLEGAEVAVLC 78
           +K+K VMG    +L ++ FAS+V AWTGEIHGRVVCDVCGDSS+GPEDHVLEGAEVAVLC
Sbjct: 2   EKQKTVMGL---ILLLLLFASDVSAWTGEIHGRVVCDVCGDSSLGPEDHVLEGAEVAVLC 58

Query: 79  ITKSGEVLNYQAFTNAKGMYTVAETMPESDRWDACLARPISSFHDHCSHLGEGSAGVKFT 138
           ITKSGEVLNYQAFT+AKG+YTVAETMPESDRWDACLARPISSFH+ C+ LGEGS GVKF+
Sbjct: 59  ITKSGEVLNYQAFTDAKGIYTVAETMPESDRWDACLARPISSFHEQCTQLGEGSIGVKFS 118

Query: 139 YNHPSGYFHTVKPFVYRHASVPTYCI 164
           YNHPSG+ HTV+ FVYR  SVPTYCI
Sbjct: 119 YNHPSGHSHTVRTFVYRPTSVPTYCI 144

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118486654|gb|ABK95164.1| unknown [Populus trichocarpa]

 Score =  243 bits (621), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 119/149 (79%), Positives = 129/149 (86%), Gaps = 3/149 (2%)

Query: 16  MESQKKKLVMGFFGFLLTIISFASNVEAWTGEIHGRVVCDVCGDSSIGPEDHVLEGAEVA 75
           M+SQ +KLV   F  LL+ I F S V+AWTGEIHGRVVCDVCGDSSIGPEDHVLEGAEVA
Sbjct: 1   MDSQLRKLVACLF--LLSAI-FVSGVKAWTGEIHGRVVCDVCGDSSIGPEDHVLEGAEVA 57

Query: 76  VLCITKSGEVLNYQAFTNAKGMYTVAETMPESDRWDACLARPISSFHDHCSHLGEGSAGV 135
           VLCITKSGEVLNYQAFTN KG+YTVAETM ESDRWDACLARPISSFH+HC+ LGE S GV
Sbjct: 58  VLCITKSGEVLNYQAFTNDKGIYTVAETMSESDRWDACLARPISSFHEHCTQLGETSTGV 117

Query: 136 KFTYNHPSGYFHTVKPFVYRHASVPTYCI 164
           KF+YN PSG+ H VKPFVY  A+VPTYCI
Sbjct: 118 KFSYNRPSGFSHRVKPFVYSPANVPTYCI 146

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357459529|ref|XP_003600045.1| hypothetical protein MTR_3g051110 [Medicago truncatula] gi|355489093|gb|AES70296.1| hypothetical protein MTR_3g051110 [Medicago truncatula] gi|388507544|gb|AFK41838.1| unknown [Medicago truncatula]

 Score =  239 bits (610), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 109/149 (73%), Positives = 128/149 (85%), Gaps = 2/149 (1%)

Query: 16  MESQKKKLVMGFFGFLLTIISFASNVEAWTGEIHGRVVCDVCGDSSIGPEDHVLEGAEVA 75
           ME+ K+K+++     L+ +  F  +V  WTGEI GRVVCDVCGDSS+GPEDHVLEGAEVA
Sbjct: 1   MEAMKQKMIVELIVLLMMV--FVLSVSGWTGEIRGRVVCDVCGDSSLGPEDHVLEGAEVA 58

Query: 76  VLCITKSGEVLNYQAFTNAKGMYTVAETMPESDRWDACLARPISSFHDHCSHLGEGSAGV 135
           VLCITKSGEVLNYQAFT+AKG+YTVAETMPESDRWDACLARPISSFH+HC+ LG GS+G+
Sbjct: 59  VLCITKSGEVLNYQAFTDAKGIYTVAETMPESDRWDACLARPISSFHEHCTRLGGGSSGI 118

Query: 136 KFTYNHPSGYFHTVKPFVYRHASVPTYCI 164
           KF+YNHPSGY H V+ FVY+  +VPTYCI
Sbjct: 119 KFSYNHPSGYSHAVRTFVYQPVNVPTYCI 147

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351727363|ref|NP_001237414.1| uncharacterized protein LOC100305581 precursor [Glycine max] gi|255625973|gb|ACU13331.1| unknown [Glycine max]

 Score =  238 bits (608), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 109/128 (85%), Positives = 119/128 (92%)

Query: 37  FASNVEAWTGEIHGRVVCDVCGDSSIGPEDHVLEGAEVAVLCITKSGEVLNYQAFTNAKG 96
           F S+V AWTGEIHGRVVCDVCGDSS+GPEDH+LEGAEVAVLCITKSGEVLNYQAFT+AKG
Sbjct: 17  FTSDVSAWTGEIHGRVVCDVCGDSSLGPEDHILEGAEVAVLCITKSGEVLNYQAFTDAKG 76

Query: 97  MYTVAETMPESDRWDACLARPISSFHDHCSHLGEGSAGVKFTYNHPSGYFHTVKPFVYRH 156
           +YTVAETMPESDRWDACLARPISSFH+ C+ LGEGS GVKF+YNHPSG+ HTV+ FVYR 
Sbjct: 77  IYTVAETMPESDRWDACLARPISSFHEQCTQLGEGSIGVKFSYNHPSGHSHTVRTFVYRP 136

Query: 157 ASVPTYCI 164
            SVPTYCI
Sbjct: 137 TSVPTYCI 144

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297737406|emb|CBI26607.3| unnamed protein product [Vitis vinifera]

 Score =  233 bits (595), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 105/128 (82%), Positives = 119/128 (92%)

Query: 37  FASNVEAWTGEIHGRVVCDVCGDSSIGPEDHVLEGAEVAVLCITKSGEVLNYQAFTNAKG 96
           F S V AWTGEIHGRVVCDVCGDSSIGPEDH+LEGAEVAVLCITKSGEVLNYQAFT+AKG
Sbjct: 2   FFSCVRAWTGEIHGRVVCDVCGDSSIGPEDHILEGAEVAVLCITKSGEVLNYQAFTDAKG 61

Query: 97  MYTVAETMPESDRWDACLARPISSFHDHCSHLGEGSAGVKFTYNHPSGYFHTVKPFVYRH 156
           +Y VAETMPESDRWDACLARPISSFH+HC+HLG+G++G+KFTY+ PSGY HT++PFVYR 
Sbjct: 62  IYRVAETMPESDRWDACLARPISSFHEHCTHLGDGTSGIKFTYSRPSGYSHTIRPFVYRP 121

Query: 157 ASVPTYCI 164
           A+ P YC+
Sbjct: 122 ANAPLYCV 129

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449515267|ref|XP_004164671.1| PREDICTED: uncharacterized LOC101212998 [Cucumis sativus]

 Score =  233 bits (594), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 105/129 (81%), Positives = 117/129 (90%)

Query: 36  SFASNVEAWTGEIHGRVVCDVCGDSSIGPEDHVLEGAEVAVLCITKSGEVLNYQAFTNAK 95
           +F S    WTG IHGRV+CDVCGDSSIGPEDHVLEGAEVAVLCIT+SGEVLNYQAFTNAK
Sbjct: 32  TFVSGSRGWTGAIHGRVICDVCGDSSIGPEDHVLEGAEVAVLCITRSGEVLNYQAFTNAK 91

Query: 96  GMYTVAETMPESDRWDACLARPISSFHDHCSHLGEGSAGVKFTYNHPSGYFHTVKPFVYR 155
           G YTVAETM ESDRWDACLARPISSFH+HC+HLG  S+GVKF+YNHPSG+ HT++PFVYR
Sbjct: 92  GRYTVAETMSESDRWDACLARPISSFHEHCTHLGANSSGVKFSYNHPSGHSHTIRPFVYR 151

Query: 156 HASVPTYCI 164
            +S+PTYCI
Sbjct: 152 PSSMPTYCI 160

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	164
TAIR|locus:505006692	146	AT5G54855 "AT5G54855" [Arabido	0.890	1.0	0.722	6.8e-56

TAIR|locus:505006692 AT5G54855 "AT5G54855" [Arabidopsis thaliana (taxid:3702)]

 Score = 576 (207.8 bits), Expect = 6.8e-56, P = 6.8e-56
 Identities = 107/148 (72%), Positives = 122/148 (82%)

Query:    16 MESQKKKLVMGFFGFLLTIISFASNVEAWTGEIHGRVVCDVCGDSSIGPEDHVLEGAEVA 75
             M+S+ +  VMG F  ++T I   S V AWTGEI GRVVCDVC DSSIGPEDHVLEGAEVA
Sbjct:     1 MDSKLRNFVMGLF--VMTAILNNSGVGAWTGEIRGRVVCDVCADSSIGPEDHVLEGAEVA 58

Query:    76 VLCITKSGEVLNYQAFTNAKGMYTVAETMPESDRWDACLARPISSFHDHCSHLGEGSAGV 135
             VLCITKSGEV+NYQAFTN+KG+YTVAETMPES+RWDACLARPISSFH  C+ L + + G+
Sbjct:    59 VLCITKSGEVVNYQAFTNSKGVYTVAETMPESERWDACLARPISSFHTPCNRLHQTNTGI 118

Query:   136 KFTYNHPSGYFHTVKPFVYRHASVPTYC 163
             KFTYN PSG+FH VKPFVYR    P+YC
Sbjct:   119 KFTYNRPSGFFHAVKPFVYRPQYAPSYC 146


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.136   0.428    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      164       164   0.00088  107 3  11 22  0.48    31
                                                     30  0.45    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  598 (64 KB)
  Total size of DFA:  166 KB (2098 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.96u 0.16s 16.12t   Elapsed:  00:00:00
  Total cpu time:  15.96u 0.16s 16.12t   Elapsed:  00:00:00
  Start:  Fri May 10 14:25:41 2013   End:  Fri May 10 14:25:41 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pm.C_LG_XI0361 SubName- Full=Putative uncharacterized protein; (146 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	164
pfam01190	95	pfam01190, Pollen_Ole_e_I, Pollen proteins Ole e I	3e-15

>gnl|CDD|216353 pfam01190, Pollen_Ole_e_I, Pollen proteins Ole e I like

 Score = 66.7 bits (163), Expect = 3e-15
 Identities = 26/82 (31%), Positives = 35/82 (42%), Gaps = 4/82 (4%)

Query: 50  GRVVCDVCGDSSIGPEDHVLEGAEVAVLCITKSGE-VLNYQAFTNAKGMYTVAETMPES- 107
           G V CD C  S      + L GA+V + C    G  V + +A T+ KG + V      S 
Sbjct: 3   GSVYCDTCRASGFELSAYPLPGAKVKIECKDGDGRVVTSAEAVTDEKGYFKVELPGDPSS 62

Query: 108 --DRWDACLARPISSFHDHCSH 127
                 AC A+ +SS    CS 
Sbjct: 63  LTHLESACRAKLVSSPDSACSA 84

Length = 95

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	164
PF01190	97	Pollen_Ole_e_I: Pollen proteins Ole e I like; Inte	99.92
PF13620	82	CarboxypepD_reg: Carboxypeptidase regulatory-like	96.02
PF01060	80	DUF290: Transthyretin-like family; InterPro: IPR00	94.91
PF13715	88	DUF4480: Domain of unknown function (DUF4480)	94.16
PF11974	97	MG1: Alpha-2-macroglobulin MG1 domain; InterPro: I	93.94
PF10670	215	DUF4198: Domain of unknown function (DUF4198)	93.33
KOG1948	1165	consensus Metalloproteinase-related collagenase pM	91.73
PF05738	70	Cna_B: Cna protein B-type domain; InterPro: IPR008	90.68
cd03866	376	M14_CPM Peptidase M14 Carboxypeptidase (CP) M (CPM	87.8
PF08400	134	phage_tail_N: Prophage tail fibre N-terminal; Inte	86.13
cd03858	374	M14_CP_N-E_like Carboxypeptidase (CP) N/E-like sub	85.44
COG5266	264	CbiK ABC-type Co2+ transport system, periplasmic c	85.41
PRK15036	137	hydroxyisourate hydrolase; Provisional	82.79
TIGR02962	112	hdxy_isourate hydroxyisourate hydrolase. Members o	80.86

>PF01190 Pollen_Ole_e_I: Pollen proteins Ole e I like; InterPro: IPR006041 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms

Probab=99.92  E-value=1.1e-24  Score=158.14  Aligned_cols=85  Identities=24%  Similarity=0.431  Sum_probs=74.4

Q ss_pred             EEEEEEcccCCCCCCCCCceecCCCeEEEEeecCCc-eEEEEEEEcCCCeeEEEEccCC----CCCCcCceEEEEeeCCC
Q 031177           48 IHGRVVCDVCGDSSIGPEDHVLEGAEVAVLCITKSG-EVLNYQAFTNAKGMYTVAETMP----ESDRWDACLARPISSFH  122 (164)
Q Consensus        48 V~G~VyCD~C~~~~~t~~s~~I~GA~V~V~Ck~~~~-~~~~~ea~TD~~G~F~I~vp~~----~~d~~~~C~V~LvsSp~  122 (164)
                      |+|.||||+|+. +++..++||+||+|+|+|+++++ ..+..+++||++|+|+|++|++    +....+.|.|+|++||+
T Consensus         1 V~G~V~C~~C~~-~~~~~~~~l~GA~V~v~C~~~~~~~~~~~~~~Td~~G~F~i~l~~~~~~~~~~~~~~C~v~l~~sp~   79 (97)
T PF01190_consen    1 VEGVVYCDDCSS-GFSRAAKPLPGAKVSVECKDGNGGVVFSAEAKTDENGYFSIELPSDPGSSSPHLSSSCRVKLVSSPD   79 (97)
T ss_pred             CEEEEEeCCCCC-CccccCccCCCCEEEEECCCCCCCcEEEEEEEeCCCCEEEEEecCccccccCCCCCCcEEEEeCCCc
Confidence            799999999999 44488999999999999999854 5678899999999999999984    23456899999999999


Q ss_pred             CCCCCCCCCCc
Q 031177          123 DHCSHLGEGSA  133 (164)
Q Consensus       123 ~~Cn~~~~~~~  133 (164)
                      +.|+++++.++
T Consensus        80 ~~C~~~~~~~~   90 (97)
T PF01190_consen   80 PSCNVPTNSNG   90 (97)
T ss_pred             CcCCCCcCCCC
Confidence            99999998643

A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Ole e 1. A number of plant pollen proteins, whose biological function is not yet known, are structurally related []. These proteins are most probably secreted and consist of about 145 residues. There are six cysteines which are conserved in the sequence of these proteins. They seem to be involved in disulphide bonds.

>PF13620 CarboxypepD_reg: Carboxypeptidase regulatory-like domain; PDB: 3MN8_D 3P0D_I 3KCP_A 2B59_B 1UWY_A 1H8L_A 1QMU_A 2NSM_A

Probab=96.02  E-value=0.0088  Score=40.66  Aligned_cols=46  Identities=20%  Similarity=0.252  Sum_probs=29.1

Q ss_pred             eEEEEEEcccCCCCCCCCCceecCCCeEEEEeecCCceEEEEEEEcCCCeeEEEE-ccC
Q 031177           47 EIHGRVVCDVCGDSSIGPEDHVLEGAEVAVLCITKSGEVLNYQAFTNAKGMYTVA-ETM  104 (164)
Q Consensus        47 ~V~G~VyCD~C~~~~~t~~s~~I~GA~V~V~Ck~~~~~~~~~ea~TD~~G~F~I~-vp~  104 (164)
                      .|.|+|.=         ....||+||.|.|.=.+...   ...+.||++|.|.++ +|.
T Consensus         1 tI~G~V~d---------~~g~pv~~a~V~l~~~~~~~---~~~~~Td~~G~f~~~~l~~   47 (82)
T PF13620_consen    1 TISGTVTD---------ATGQPVPGATVTLTDQDGGT---VYTTTTDSDGRFSFEGLPP   47 (82)
T ss_dssp             -EEEEEEE---------TTSCBHTT-EEEET--TTTE---CCEEE--TTSEEEEEEE-S
T ss_pred             CEEEEEEc---------CCCCCcCCEEEEEEEeeCCC---EEEEEECCCceEEEEccCC
Confidence            36777763         13569999999998765422   356899999999998 764

>PF01060 DUF290: Transthyretin-like family; InterPro: IPR001534 This new apparently nematode-specific protein family has been called family 2 []

Probab=94.91  E-value=0.086  Score=36.87  Aligned_cols=45  Identities=13%  Similarity=0.252  Sum_probs=35.3

Q ss_pred             EEEEEcccCCCCCCCCCceecCCCeEEEEeecC-CceEEEEEEEcCCCeeEEEEcc
Q 031177           49 HGRVVCDVCGDSSIGPEDHVLEGAEVAVLCITK-SGEVLNYQAFTNAKGMYTVAET  103 (164)
Q Consensus        49 ~G~VyCD~C~~~~~t~~s~~I~GA~V~V~Ck~~-~~~~~~~ea~TD~~G~F~I~vp  103 (164)
                      .|+..|          +..|.+|++|.|-=+|. .....-.+..||++|.|.|.=-
T Consensus         1 ~G~L~C----------~~~P~~~~~V~L~e~d~~~~Ddll~~~~Td~~G~F~l~G~   46 (80)
T PF01060_consen    1 KGQLMC----------GGKPAKNVKVKLWEDDYFDPDDLLDETKTDSDGNFELSGS   46 (80)
T ss_pred             CeEEEe----------CCccCCCCEEEEEECCCCCCCceeEEEEECCCceEEEEEE
Confidence            377778          57889999999988886 3344455789999999999744

The proteins show weak similarity to transthyretin (formerly called prealbumin) which transports thyroid hormones. The specific function of this protein is unknown.; GO: 0005615 extracellular space

>PF13715 DUF4480: Domain of unknown function (DUF4480)

Probab=94.16  E-value=0.061  Score=37.17  Aligned_cols=32  Identities=19%  Similarity=0.234  Sum_probs=25.6

Q ss_pred             ceecCCCeEEEEeecCCceEEEEEEEcCCCeeEEEEccC
Q 031177           66 DHVLEGAEVAVLCITKSGEVLNYQAFTNAKGMYTVAETM  104 (164)
Q Consensus        66 s~~I~GA~V~V~Ck~~~~~~~~~ea~TD~~G~F~I~vp~  104 (164)
                      ..||+||.|.+.=.+       ..+.||++|.|.|.+|.
T Consensus        12 ~~pl~~a~V~~~~~~-------~~~~Td~~G~F~i~~~~   43 (88)
T PF13715_consen   12 GEPLPGATVYLKNTK-------KGTVTDENGRFSIKLPE   43 (88)
T ss_pred             CCCccCeEEEEeCCc-------ceEEECCCeEEEEEEcC
Confidence            579999999987222       34689999999999874

>PF11974 MG1: Alpha-2-macroglobulin MG1 domain; InterPro: IPR021868 This is the N-terminal MG1 domain from alpha-2-macroglobulin []

Probab=93.94  E-value=0.087  Score=38.36  Aligned_cols=36  Identities=28%  Similarity=0.398  Sum_probs=27.6

Q ss_pred             CceecCCCeEEEEeec-CCceEEEEEEEcCCCeeEEEEcc
Q 031177           65 EDHVLEGAEVAVLCIT-KSGEVLNYQAFTNAKGMYTVAET  103 (164)
Q Consensus        65 ~s~~I~GA~V~V~Ck~-~~~~~~~~ea~TD~~G~F~I~vp  103 (164)
                      -..|++||+|.|  .+ .++.+ -.+++||++|...++..
T Consensus        24 tg~Pv~ga~V~l--~~~~~~~~-l~~g~TD~~G~a~~~~~   60 (97)
T PF11974_consen   24 TGKPVAGAEVEL--YDSRNGQV-LASGKTDADGFASFDST   60 (97)
T ss_pred             CCCccCCCEEEE--EECCCCcE-eeeeeeCCCceEEecCC
Confidence            477999999999  44 33333 35789999999999765

>PF10670 DUF4198: Domain of unknown function (DUF4198)

Probab=93.33  E-value=0.14  Score=40.54  Aligned_cols=42  Identities=26%  Similarity=0.195  Sum_probs=33.7

Q ss_pred             CceecCCCeEEEEeecCCceE--EEEEEEcCCCeeEEEEccCCC
Q 031177           65 EDHVLEGAEVAVLCITKSGEV--LNYQAFTNAKGMYTVAETMPE  106 (164)
Q Consensus        65 ~s~~I~GA~V~V~Ck~~~~~~--~~~ea~TD~~G~F~I~vp~~~  106 (164)
                      ...|++||+|.+.-.+.....  ...+.+||++|.+.|.++..+
T Consensus       160 ~GkPl~~a~V~~~~~~~~~~~~~~~~~~~TD~~G~~~~~~~~~G  203 (215)
T PF10670_consen  160 DGKPLAGAEVEAFSPGGWYDVEHEAKTLKTDANGRATFTLPRPG  203 (215)
T ss_pred             CCeEcccEEEEEEECCCccccccceEEEEECCCCEEEEecCCCE
Confidence            478999999999999873322  256789999999999988644

>KOG1948 consensus Metalloproteinase-related collagenase pM5 [Posttranslational modification, protein turnover, chaperones]

Probab=91.73  E-value=0.72  Score=45.86  Aligned_cols=72  Identities=15%  Similarity=0.187  Sum_probs=51.0

Q ss_pred             cceEEEEEEcccCCCCCCCCCceecCCCeEEEEeecCCceEEEEEEEcCCCeeEEEEccCCCCCCcCceEEEEeeCCCCC
Q 031177           45 TGEIHGRVVCDVCGDSSIGPEDHVLEGAEVAVLCITKSGEVLNYQAFTNAKGMYTVAETMPESDRWDACLARPISSFHDH  124 (164)
Q Consensus        45 ~~~V~G~VyCD~C~~~~~t~~s~~I~GA~V~V~Ck~~~~~~~~~ea~TD~~G~F~I~vp~~~~d~~~~C~V~LvsSp~~~  124 (164)
                      .++.+|+-.=-+|.-.-.+....|..|  |.||=...+-..+..|++||++|.|+|.  +.+++    |.-.+.-++..+
T Consensus       897 ~vvl~gkRvAySayGtvssLsGdp~~g--VaieA~sdn~~~y~eeattdenG~yRiR--GL~Pd----c~Y~V~vk~~~~  968 (1165)
T KOG1948|consen  897 NVVLKGKRVAYSAYGTVSSLSGDPMKG--VAIEALSDNCDLYQEEATTDENGTYRIR--GLLPD----CEYQVHVKSYAD  968 (1165)
T ss_pred             EEEEEEEEEEEEeeeehhhccCCcccC--eEEEEecCCCCccccccccccCCcEEEe--ccCCC----ceEEEEEeeccC
Confidence            347788877777765544566777777  5666666544556678999999999995  44444    888877777655

>PF05738 Cna_B: Cna protein B-type domain; InterPro: IPR008454 This entry represents a repeated B region domain found in the collagen-binding surface protein Cna in Staphylococcus aureus, as well as other related domains

Probab=90.68  E-value=0.4  Score=31.71  Aligned_cols=32  Identities=25%  Similarity=0.340  Sum_probs=23.8

Q ss_pred             cCCCeEEEEeecCCceEEEEEEEcCCCeeEEEE
Q 031177           69 LEGAEVAVLCITKSGEVLNYQAFTNAKGMYTVA  101 (164)
Q Consensus        69 I~GA~V~V~Ck~~~~~~~~~ea~TD~~G~F~I~  101 (164)
                      |+||++.|.-.+... ....+.+||++|.|.++
T Consensus         1 L~Ga~f~L~~~~~~~-~~~~~~~Td~~G~~~f~   32 (70)
T PF05738_consen    1 LAGATFELYDEDGNE-VIEVTVTTDENGKYTFK   32 (70)
T ss_dssp             -STEEEEEEETTSEE-EEEEEEEGGTTSEEEEE
T ss_pred             CCCeEEEEEECCCCE-EEEEEEEECCCCEEEEe
Confidence            689999998777522 22226899999999987

The B region domain of Cna has a prealbumin-like beta-sandwich fold of seven strands in two sheets with a Greek key topology []. However, this domain does not mediate collagen binding, the IPR008456 from INTERPRO region carries out that function; instead it appears to form a stalk that presents the ligand binding domain away from the bacterial cell surface. Cna is a collagen-binding MSCRAMM (Microbial Surface Component Recognizing Adhesive Matrix Molecules), and is necessary and sufficient for S. aureus cells to adhere to cartilage.; PDB: 2X5P_A 3RKP_A 3KPT_A 1VLF_T 1TI2_F 1TI6_D 1TI4_J 1VLE_V 1VLD_X 3PF2_A ....

>cd03866 M14_CPM Peptidase M14 Carboxypeptidase (CP) M (CPM) belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs)

Probab=87.80  E-value=2.1  Score=38.31  Aligned_cols=44  Identities=23%  Similarity=0.209  Sum_probs=31.9

Q ss_pred             ceEEEEEEcccCCCCCCCCCceecCCCeEEEEeecCCceEEEEEEEcCCCeeEEEEcc
Q 031177           46 GEIHGRVVCDVCGDSSIGPEDHVLEGAEVAVLCITKSGEVLNYQAFTNAKGMYTVAET  103 (164)
Q Consensus        46 ~~V~G~VyCD~C~~~~~t~~s~~I~GA~V~V~Ck~~~~~~~~~ea~TD~~G~F~I~vp  103 (164)
                      .-|.|.|. |.  .      ..||+||+|.|+  +.+   .....+||++|.|...++
T Consensus       295 ~gI~G~V~-D~--~------g~pi~~A~V~v~--g~~---~~~~~~T~~~G~y~~~l~  338 (376)
T cd03866         295 LGVKGQVF-DS--N------GNPIPNAIVEVK--GRK---HICPYRTNVNGEYFLLLL  338 (376)
T ss_pred             CceEEEEE-CC--C------CCccCCeEEEEE--cCC---ceeEEEECCCceEEEecC
Confidence            46999998 53  1      259999999997  211   123458999999987665

The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPM is an extracellular glycoprotein, bound to cell membranes via a glycosyl-phosphatidylinositol on the C-terminus of the protein. It specifically removes C-terminal basic residues such as lysine and arginine from peptides and proteins. The highest levels of CPM have been found in human lung and placenta, but significant amounts are present in kidney, blood vessels, intestine, brain, and peripheral nerves. CPM has also been found in soluble form in various body fluids, including amniotic fluid, seminal plasma and urine. Due to its wide distribution in a variety of tissues, it is believed that it plays an important role in the cont

>PF08400 phage_tail_N: Prophage tail fibre N-terminal; InterPro: IPR013609 This entry represents the N terminus of phage 933W tail fibre protein

Probab=86.13  E-value=1.6  Score=34.05  Aligned_cols=41  Identities=15%  Similarity=0.185  Sum_probs=32.3

Q ss_pred             CCceecCCCeEEEEeecCCceE-E--EEEEEcCCCeeEEEEccC
Q 031177           64 PEDHVLEGAEVAVLCITKSGEV-L--NYQAFTNAKGMYTVAETM  104 (164)
Q Consensus        64 ~~s~~I~GA~V~V~Ck~~~~~~-~--~~ea~TD~~G~F~I~vp~  104 (164)
                      ....|++|+.+.|.=+.....+ +  .....||++|.|.+++..
T Consensus        12 g~G~pv~g~~I~L~A~~tS~~Vv~~t~as~~t~~~G~Ys~~~ep   55 (134)
T PF08400_consen   12 GAGKPVPGCTITLKARRTSSTVVVGTVASVVTGEAGEYSFDVEP   55 (134)
T ss_pred             CCCCcCCCCEEEEEEccCchheEEEEEEEEEcCCCceEEEEecC
Confidence            4578999999999988874433 3  346699999999999863

The characteristics of the protein distribution suggest prophage matches.

>cd03858 M14_CP_N-E_like Carboxypeptidase (CP) N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs)

Probab=85.44  E-value=1.7  Score=38.33  Aligned_cols=42  Identities=21%  Similarity=0.162  Sum_probs=32.0

Q ss_pred             ceEEEEEEcccCCCCCCCCCceecCCCeEEEEeecCCceEEEEEEEcCCCeeEEEEcc
Q 031177           46 GEIHGRVVCDVCGDSSIGPEDHVLEGAEVAVLCITKSGEVLNYQAFTNAKGMYTVAET  103 (164)
Q Consensus        46 ~~V~G~VyCD~C~~~~~t~~s~~I~GA~V~V~Ck~~~~~~~~~ea~TD~~G~F~I~vp  103 (164)
                      ..|.|+|.-.         ...||+||+|.|+  .     ......||++|.|.+.+|
T Consensus       298 ~~i~G~V~d~---------~g~pl~~A~V~i~--~-----~~~~~~Td~~G~f~~~l~  339 (374)
T cd03858         298 RGIKGFVRDA---------NGNPIANATISVE--G-----INHDVTTAEDGDYWRLLL  339 (374)
T ss_pred             CceEEEEECC---------CCCccCCeEEEEe--c-----ceeeeEECCCceEEEecC
Confidence            3799999763         1359999999993  1     124568999999999886

The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. The N/E subfamily includes eight members, of which five (CPN, CPE, CPM, CPD, CPZ) are considered enzymatically active, while the other three are non-active (CPX1, PCX2, ACLP/AEBP1) and lack the critical active site and substrate-binding residues considered necessary for CP activity. These non-active members may function as binding proteins or display catalytic activity towards other substrates. Unlike the A/B CP subfamily, enzymes belonging to the N/E subfamily are not produced as inactive precursors that require proteolysis to produce the active form; rather, they rely on their substrate specificity and subcellular compartmentalization to prevent inappr

>COG5266 CbiK ABC-type Co2+ transport system, periplasmic component [Inorganic ion transport and metabolism]

Probab=85.41  E-value=1.2  Score=38.35  Aligned_cols=39  Identities=21%  Similarity=0.135  Sum_probs=28.8

Q ss_pred             ceecCCCeEEEEeec----------CCceEEEEEEEcCCCeeEEEEccC
Q 031177           66 DHVLEGAEVAVLCIT----------KSGEVLNYQAFTNAKGMYTVAETM  104 (164)
Q Consensus        66 s~~I~GA~V~V~Ck~----------~~~~~~~~ea~TD~~G~F~I~vp~  104 (164)
                      .+|||||+|.++=-+          .+++.......||.+|+|.+..+-
T Consensus       182 GkPv~nA~V~v~~~n~~~~d~~a~~~~~ek~~~~~~TD~kG~~~fip~r  230 (264)
T COG5266         182 GKPVPNATVEVEFDNIDTKDNRAKTGNTEKTALVQFTDDKGEVSFIPLR  230 (264)
T ss_pred             CccCCCcEEEEEEecccccccccccCCCCCcceEEEcCCCceEEEEEcc
Confidence            789999999999433          122333456799999999997554

>PRK15036 hydroxyisourate hydrolase; Provisional

Probab=82.79  E-value=2.2  Score=33.16  Aligned_cols=49  Identities=10%  Similarity=-0.018  Sum_probs=35.3

Q ss_pred             eEEEEEEcccCCCCCCCCCceecCCCeEEEEeecCCceEEEEEEEcCCCeeEEEEcc
Q 031177           47 EIHGRVVCDVCGDSSIGPEDHVLEGAEVAVLCITKSGEVLNYQAFTNAKGMYTVAET  103 (164)
Q Consensus        47 ~V~G~VyCD~C~~~~~t~~s~~I~GA~V~V~Ck~~~~~~~~~ea~TD~~G~F~I~vp  103 (164)
                      .|.|.|.        -+....|.+|.+|+|+=.+.++...-.++.||++|.|+..++
T Consensus        28 ~Is~HVL--------Dt~~G~PA~gV~V~L~~~~~~~w~~l~~~~Td~dGR~~~l~~   76 (137)
T PRK15036         28 ILSVHIL--------NQQTGKPAADVTVTLEKKADNGWLQLNTAKTDKDGRIKALWP   76 (137)
T ss_pred             CeEEEEE--------eCCCCcCCCCCEEEEEEccCCceEEEEEEEECCCCCCccccC
Confidence            5888876        234578999999999754433334456889999999986444

>TIGR02962 hdxy_isourate hydroxyisourate hydrolase

Probab=80.86  E-value=3.1  Score=31.32  Aligned_cols=39  Identities=21%  Similarity=0.136  Sum_probs=29.8

Q ss_pred             CceecCCCeEEEEeecCCceEEEEEEEcCCCeeEEEEcc
Q 031177           65 EDHVLEGAEVAVLCITKSGEVLNYQAFTNAKGMYTVAET  103 (164)
Q Consensus        65 ~s~~I~GA~V~V~Ck~~~~~~~~~ea~TD~~G~F~I~vp  103 (164)
                      .-.|-+|..|.|...+.++...-.+++||++|...-.++
T Consensus        12 ~G~PAagv~V~L~~~~~~~~~~i~~~~Tn~DGR~~~~l~   50 (112)
T TIGR02962        12 SGKPAAGVPVTLYRLDGSGWTPLAEGVTNADGRCPDLLP   50 (112)
T ss_pred             CCccCCCCEEEEEEecCCCeEEEEEEEECCCCCCcCccc
Confidence            456889999999988765545556899999999874343

Members of this family, hydroxyisourate hydrolase, represent a distinct clade of transthyretin-related proteins. Bacterial members typically are encoded next to ureidoglycolate hydrolase and often near either xanthine dehydrogenase or xanthine/uracil permease genes and have been demonstrated to have hydroxyisourate hydrolase activity. In eukaryotes, a clade separate from the transthyretins (a family of thyroid-hormone binding proteins) has also been shown to have HIU hydrolase activity in urate catabolizing organisms. Transthyretin, then, would appear to be the recently diverged paralog of the more ancient HIUH family.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	164
3irp_X	429	URO-adherence factor A; DEV-IGG fold, cell WALL, h	93.01
3uaf_A	117	TTR-52; beta barrel/sandwich, cell engulfment, sec	92.83
3e8v_A	82	Possible transglutaminase-family protein; structur	92.07
3kcp_A	321	Cellulosomal-scaffolding protein A; dockerin, X-mo	86.09

>3irp_X URO-adherence factor A; DEV-IGG fold, cell WALL, hemagglutinin, peptidoglycan-anchor secreted, virulence, cell adhesion; 1.50A {Staphylococcus saprophyticus subsp} PDB: 3irz_A 3is0_X 3is1_X

Probab=93.01  E-value=0.35  Score=42.71  Aligned_cols=56  Identities=23%  Similarity=0.230  Sum_probs=44.6

Q ss_pred             cccceEEEEEEcccCCCCCCCCCceecCCCeEEEEeecCCceEEEEEEEcCCCeeEEEE
Q 031177           43 AWTGEIHGRVVCDVCGDSSIGPEDHVLEGAEVAVLCITKSGEVLNYQAFTNAKGMYTVA  101 (164)
Q Consensus        43 a~~~~V~G~VyCD~C~~~~~t~~s~~I~GA~V~V~Ck~~~~~~~~~ea~TD~~G~F~I~  101 (164)
                      +....|.|.||-|.=+.|-....-.+|+|++|.|.  +..+.+ ....+||++|.|...
T Consensus       303 ~G~~~igg~Vw~D~n~nG~~D~~e~gl~gv~v~L~--d~~G~~-v~tttTd~~G~Y~F~  358 (429)
T 3irp_X          303 AGFGGFGGYVWFDKNNDGVQNDSNAAAAGITVNLL--DPTGIR-LATTTTDITGHYNFD  358 (429)
T ss_dssp             SCEEEEEEEEEECTTSSSSSCCSSCBCTTCEEEEE--CTTSCE-EEEEECCTTSEEEEE
T ss_pred             cceEEEccEEEEeCCCCCCcCcCCCCcCCeEEEEE--cCCCCE-EEEEEeCCCCeEEeC
Confidence            45578999999999877776677789999999996  544443 346799999999965

>3uaf_A TTR-52; beta barrel/sandwich, cell engulfment, secreted, protein BIN; 2.01A {Caenorhabditis elegans}

Probab=92.83  E-value=0.13  Score=38.01  Aligned_cols=48  Identities=10%  Similarity=0.171  Sum_probs=31.9

Q ss_pred             cceEEEEEEcccCCCCCCCCCceecC--CCeEEEEeecCC---ceEEEEEEEcCCCeeEEEEc
Q 031177           45 TGEIHGRVVCDVCGDSSIGPEDHVLE--GAEVAVLCITKS---GEVLNYQAFTNAKGMYTVAE  102 (164)
Q Consensus        45 ~~~V~G~VyCD~C~~~~~t~~s~~I~--GA~V~V~Ck~~~---~~~~~~ea~TD~~G~F~I~v  102 (164)
                      .+.|.|+..|          +..|-+  +++|.|-=.+..   ...+-.++.||++|.|.|.=
T Consensus         4 sV~V~G~L~C----------~~~Pa~~~~V~V~L~d~~~~~~d~Ddll~~~~Td~~G~F~l~G   56 (117)
T 3uaf_A            4 CLMATGVLKC----------PTDPEAVKKVHIDLWDAAAAAAESDDLMGRTWSDRNGNFQVTG   56 (117)
T ss_dssp             EEEEEEEEEC----------TTCGGGGSSCEEEEEEHHHHHTTSCCEEEEEECCTTSEEEEEE
T ss_pred             EEEEEEEEEe----------CCccCCCCCEEEEEEecccccCCchHhheeeEECCCCEEEEEE
Confidence            4789999999          456644  556655322221   12344578999999999963

>3e8v_A Possible transglutaminase-family protein; structural genomics, unknown function, PSI-2, protein structure initiative; 2.40A {Bacteroides fragilis nctc 9343}

Probab=92.07  E-value=0.36  Score=33.72  Aligned_cols=38  Identities=16%  Similarity=0.176  Sum_probs=30.9

Q ss_pred             CCceecCCCeEEEEeecCCceEEE-EEEEcCCCeeEEEEc
Q 031177           64 PEDHVLEGAEVAVLCITKSGEVLN-YQAFTNAKGMYTVAE  102 (164)
Q Consensus        64 ~~s~~I~GA~V~V~Ck~~~~~~~~-~ea~TD~~G~F~I~v  102 (164)
                      ....|++||+|.++=.|. .+.+. ..-.||++|.|.+..
T Consensus        10 ~~GkPV~gA~Vefe~yNy-ae~~~~~~~~TD~~G~~s~~~   48 (82)
T 3e8v_A           10 AEGQPVADATVEFKVYNY-AEFYTVATKHTDRSGHASLTA   48 (82)
T ss_dssp             TTSCBCTTCEEEEEEEET-TEEEEEEEEECCTTSEEEEEC
T ss_pred             CCCCCCCCCEEEEEEEEc-hheeEEEEEEECCCceEEEEE
Confidence            457899999999999886 44443 456999999999987

>3kcp_A Cellulosomal-scaffolding protein A; dockerin, X-module, carbohydrate metabolism, cell WALL biogenesis/degradation; 1.94A {Clostridium thermocellum atcc 27405} PDB: 3p0d_C 4fl4_C 2b59_B

Probab=86.09  E-value=0.61  Score=40.01  Aligned_cols=51  Identities=20%  Similarity=0.261  Sum_probs=37.9

Q ss_pred             cceEEEEEEcccCCCCCCCCCceecCCCeEEEEeecCCceEEEEEEEcCCCeeEEE-EccC
Q 031177           45 TGEIHGRVVCDVCGDSSIGPEDHVLEGAEVAVLCITKSGEVLNYQAFTNAKGMYTV-AETM  104 (164)
Q Consensus        45 ~~~V~G~VyCD~C~~~~~t~~s~~I~GA~V~V~Ck~~~~~~~~~ea~TD~~G~F~I-~vp~  104 (164)
                      ...|.|.|.+|.=....  .....-.|++|.|.=.+.       .++||++|+|+| .+|.
T Consensus       157 ~~~vsGYi~~~~~~~~~--~~~~~~~G~~V~i~gt~~-------sa~tD~~G~f~I~~vp~  208 (321)
T 3kcp_A          157 GYKVSGYILPDFSFDAT--VAPLVKAGFKVEIVGTEL-------YAVTDANGYFEITGVPA  208 (321)
T ss_dssp             SEEEEEEEEESSCCCTT--THHHHHSCCEEEETTSSC-------EEECCTTSEEEEEEECC
T ss_pred             CceEEEEEccccccccc--cchhccCCcEEEEEeccc-------eeEECCCceEEEeccCC
Confidence            34899999997533322  445567899999975553       789999999999 6665

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	164
d1vlfn1	79	Transhydroxylase beta subunit, BthL, C-terminal do	95.3
d1h8la1	79	Carboxypeptidase D C-terminal domain {Crested duck	93.5
d1nkga1	87	Rhamnogalacturonase B, RhgB, middle domain {Asperg	87.29
d1cwva1	94	Invasin {Yersinia pseudotuberculosis [TaxId: 633]}	81.86

>d1vlfn1 b.3.5.1 (N:196-274) Transhydroxylase beta subunit, BthL, C-terminal domain {Pelobacter acidigallici [TaxId: 35816]}

class: All beta proteins
fold: Prealbumin-like
superfamily: Cna protein B-type domain
family: Cna protein B-type domain
domain: Transhydroxylase beta subunit, BthL, C-terminal domain
species: Pelobacter acidigallici [TaxId: 35816]

Probab=95.30  E-value=0.012  Score=38.72  Aligned_cols=42  Identities=29%  Similarity=0.291  Sum_probs=30.9

Q ss_pred             cceEEEEEEcccCCCCCCCCCceecCCCeEEEEeecCCceEEEEEEEcCCCeeEEEE
Q 031177           45 TGEIHGRVVCDVCGDSSIGPEDHVLEGAEVAVLCITKSGEVLNYQAFTNAKGMYTVA  101 (164)
Q Consensus        45 ~~~V~G~VyCD~C~~~~~t~~s~~I~GA~V~V~Ck~~~~~~~~~ea~TD~~G~F~I~  101 (164)
                      ++.|.|.|. |          ..||+||+|.|.  +.++.+  .++.||++|.|+++
T Consensus         2 n~~~~gi~~-~----------G~~v~gA~V~L~--~~~~~v--~~t~Td~~G~F~f~   43 (79)
T d1vlfn1           2 NYVTAGILV-Q----------GDCFEGAKVVLK--SGGKEV--ASAETNFFGEFKFD   43 (79)
T ss_dssp             EEEEEEEEE-T----------TEECTTCEEEEE--ETTEEE--EEEECCTTSEEEEE
T ss_pred             CcEEeeEEE-C----------CccccccEEEEE--CCCCeE--EeeEECCCCcEEEE
Confidence            456777774 1          469999999994  433332  45789999999997

>d1h8la1 b.3.2.1 (A:305-383) Carboxypeptidase D C-terminal domain {Crested duck (Lophonetta specularioides) [TaxId: 8836]}

class: All beta proteins
fold: Prealbumin-like
superfamily: Carboxypeptidase regulatory domain-like
family: Carboxypeptidase regulatory domain
domain: Carboxypeptidase D C-terminal domain
species: Crested duck (Lophonetta specularioides) [TaxId: 8836]

Probab=93.50  E-value=0.028  Score=35.95  Aligned_cols=33  Identities=18%  Similarity=0.064  Sum_probs=25.1

Q ss_pred             CceecCCCeEEEEeecCCceEEEEEEEcCCCeeEEEEccC
Q 031177           65 EDHVLEGAEVAVLCITKSGEVLNYQAFTNAKGMYTVAETM  104 (164)
Q Consensus        65 ~s~~I~GA~V~V~Ck~~~~~~~~~ea~TD~~G~F~I~vp~  104 (164)
                      ...||+||.|.|+  +  .   .....||++|.|.+.+|.
T Consensus        11 tg~pi~~a~V~v~--~--~---~~~~~Td~~G~f~~~l~~   43 (79)
T d1h8la1          11 DGRGILNATISVA--D--I---NHPVTTYKDGDYWRLLVQ   43 (79)
T ss_dssp             TCSBCTTCEEEET--T--E---EEEEECCTTSEEEECCCS
T ss_pred             CCCCcCCeEEEEe--C--c---cccEEecCCCCEEEEeec
Confidence            3579999999984  2  1   234589999999988774

>d1nkga1 b.3.1.2 (A:251-337) Rhamnogalacturonase B, RhgB, middle domain {Aspergillus aculeatus [TaxId: 5053]}

class: All beta proteins
fold: Prealbumin-like
superfamily: Starch-binding domain-like
family: Rhamnogalacturonase B, RhgB, middle domain
domain: Rhamnogalacturonase B, RhgB, middle domain
species: Aspergillus aculeatus [TaxId: 5053]

Probab=87.29  E-value=0.13  Score=33.62  Aligned_cols=44  Identities=14%  Similarity=0.156  Sum_probs=28.1

Q ss_pred             ccceEEEEEEcccCCCCCCCCCceecCCCeEEEEeecCCceEEEEEEEcCCCeeEEEE-cc
Q 031177           44 WTGEIHGRVVCDVCGDSSIGPEDHVLEGAEVAVLCITKSGEVLNYQAFTNAKGMYTVA-ET  103 (164)
Q Consensus        44 ~~~~V~G~VyCD~C~~~~~t~~s~~I~GA~V~V~Ck~~~~~~~~~ea~TD~~G~F~I~-vp  103 (164)
                      ....|.|+|- |        ....+++++.|.+.-.       .+.+.||++|.|.|. +|
T Consensus         6 ~~GtvsG~V~-~--------~~~~~~~~v~v~~~~~-------~~~~~Td~~G~f~i~~l~   50 (87)
T d1nkga1           6 GRGKVAGTAS-G--------ADSSMDWVVHWYNDAA-------QYWTYTSSSGSFTSPAMK   50 (87)
T ss_dssp             GCBEEEEEEE-S--------SCTTSCEEEEEECSSC-------EEEEECCTTCEEECCCBC
T ss_pred             cEEEEEEEEE-C--------CCCCcccEEEEEeCCc-------EEEEEeCCCCcEEEcccC
Confidence            3568999993 1        2233456666653211       245799999999994 54

>d1cwva1 b.1.14.1 (A:503-596) Invasin {Yersinia pseudotuberculosis [TaxId: 633]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Invasin/intimin cell-adhesion fragments
family: Invasin/intimin cell-adhesion fragments
domain: Invasin
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=81.86  E-value=0.96  Score=29.88  Aligned_cols=39  Identities=26%  Similarity=0.222  Sum_probs=29.2

Q ss_pred             CceecCCCeEEEEeecCCceEEEEEEEcCCCeeEEEEccC
Q 031177           65 EDHVLEGAEVAVLCITKSGEVLNYQAFTNAKGMYTVAETM  104 (164)
Q Consensus        65 ~s~~I~GA~V~V~Ck~~~~~~~~~ea~TD~~G~F~I~vp~  104 (164)
                      .-.||+|+.|..+=-. .........+||++|.+.+.+.+
T Consensus        30 ~gnpv~g~~V~f~~~~-~~~~~~~~~~Td~~G~a~v~lts   68 (94)
T d1cwva1          30 EGKPLAGQEVVITTNN-GALPNKITEKTDANGVARIALTN   68 (94)
T ss_dssp             TSCBCCSCEEEEECCT-TCBSCEEEEECCTTSEEEEEEBC
T ss_pred             CCCCcCCCEEEEEECC-CcEEecceeEECCCEEEEEEEEe
Confidence            4678999999987433 22233446799999999999986