Citrus Sinensis ID: 031190

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160----
Protein Sequence
MQGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVVSSRFESVSSARMEEHGFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTGHMLLP
Secondary Structure (PSIPRED)
cHHHHHHHHHcccHHHHHHHHHHHHccccccccHHHHHcccccHHHHHcccccccHHHHHHHccccccccEEEEccccHHHHHHHHHHHccccEEEEEEcccccEEEEEEcHHHHHHHHHHcccccccccccccccccccEEEEcccccHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHcccHHHHHHHHHcccccccccccEEEcccccccccHHHccccccHHHHHHHHccccccccEEEEcccHHHHHHHHHHHHcccEEEEEEEcccccEEEEEEEHHHHHHHHHHcccccccccHHHHccccccEEEEcccccHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
MQGAIQSFLSHGNIVKSAVLQRIRLvnpmlrpvvssrFESVSSarmeehgfesttISDILKakgkgadgswlwcttdDTVYDAVKSMTQHNVGAlvvvkpgeqksvagiITERDYLRKIIVQgrsskstkvgdimteenklitvspDTKVLRAMQLMTGHMLLP
Flexible Loop (DISEMBL)
MQGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVVSSRFESVSsarmeehgfesttisdILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVgalvvvkpgeqksvagiiterdylrkiivqgrsskstkvgdimteenklitvspdtkVLRAMQLMTGHMLLP
Low Complexity Region (SEG)
MQGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVVSSRFESVSSARMEEHGFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTGHMLLP
Disordered region (IsUnstruct)
*******FLSHGNIVKSAVLQRIRLVNPMLRPVV********************TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQG*****************LITV*****VL*************
Disordered Region (DISOPRED)
*********************************************************DILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTGHMLLP
Disordered Region (DISEMBL)
MQGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVVSSRFESVSSARMEEHGFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTGHMLLP
Disordered Region (DISPRO)
*QGAIQSF*SHGNIVKSAVLQRIRLVNPMLRPVVSSRFESVSSARME*HGFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTGHMLLP
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVVSSRFESVSSARMEEHGFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTGHMLLP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	164	2.2.26 [Sep-21-2011]
Q9LEV3	206	CBS domain-containing pro	yes	no	0.963	0.766	0.805	4e-71
O34682	148	Uncharacterized protein Y	yes	no	0.518	0.574	0.384	6e-07
Q58069	194	Uncharacterized protein M	yes	no	0.475	0.402	0.325	1e-06
P54606	140	CBS domain-containing pro	no	no	0.487	0.571	0.360	4e-06
O67500	322	Uncharacterized phosphosu	no	no	0.481	0.245	0.357	3e-05
P50100	196	Uncharacterized protein M	no	no	0.463	0.387	0.35	5e-05
P21879	488	Inosine-5'-monophosphate	no	no	0.597	0.200	0.314	0.0002
P32987	164	Uncharacterized 17.7 kDa	N/A	no	0.469	0.469	0.388	0.0003
Q4L385	488	Inosine-5'-monophosphate	yes	no	0.512	0.172	0.318	0.0005
Q57892	186	Uncharacterized protein M	no	no	0.5	0.440	0.273	0.0006

>sp|Q9LEV3|CBSX3_ARATH CBS domain-containing protein CBSX3, mitochondrial OS=Arabidopsis thaliana GN=CBSX3 PE=1 SV=1

 Score =  266 bits (680), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 128/159 (80%), Positives = 145/159 (91%), Gaps = 1/159 (0%)

Query: 1   MQGAIQSFLSHGNIVKSAVLQRIRLVNPMLRP-VVSSRFESVSSARMEEHGFESTTISDI 59
           MQG I+SF+S GN+VK +VLQ +R++NP ++P V  SR ES   ARMEE GFESTTISD+
Sbjct: 1   MQGVIRSFVSGGNVVKGSVLQHLRVINPAIQPSVFCSRSESTQPARMEESGFESTTISDV 60

Query: 60  LKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI 119
           +K+KGK ADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ+++AGIITERDYLRKI
Sbjct: 61  MKSKGKSADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQQALAGIITERDYLRKI 120

Query: 120 IVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMT 158
           IVQGRSSKSTKVGDIMTEENKLITV+P+TKVLRAMQLMT
Sbjct: 121 IVQGRSSKSTKVGDIMTEENKLITVTPETKVLRAMQLMT 159

Arabidopsis thaliana (taxid: 3702)

>sp|O34682|YLBB_BACSU Uncharacterized protein YlbB OS=Bacillus subtilis (strain 168) GN=ylbB PE=4 SV=2

 Score = 53.5 bits (127), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/91 (38%), Positives = 50/91 (54%), Gaps = 6/91 (6%)

Query: 73  WCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDY-LRKIIVQGRSSKSTKV 131
           +CT  D VY+A   M   NVGA+ VV   + +++ GI+T+RD  LR I +  +   S K+
Sbjct: 14  YCTVLDNVYEAAVKMKDANVGAIPVVDE-DGETLVGIVTDRDLVLRGIAI--KKPNSQKI 70

Query: 132 GDIMTEENKLITVSPDTKVLRAMQLMTGHML 162
            D MTE  K ++V  D  V   + LM  H L
Sbjct: 71  TDAMTE--KPVSVEEDASVDEVLHLMASHQL 99

Bacillus subtilis (strain 168) (taxid: 224308)

>sp|Q58069|Y653_METJA Uncharacterized protein MJ0653 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ0653 PE=4 SV=1

 Score = 52.4 bits (124), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 52/89 (58%), Gaps = 11/89 (12%)

Query: 75  TTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDI 134
           T + ++YD    MT++N+GA+V+V   E     GI+TERD +++++     SK+ K  D+
Sbjct: 21  TKNMSIYDIANIMTENNIGAVVIV---ENNKPIGIVTERDIVKRVV-----SKNLKPKDV 72

Query: 135 MTEE---NKLITVSPDTKVLRAMQLMTGH 160
           + EE    K+IT+  +  +  A ++M  H
Sbjct: 73  LAEEVMSKKIITIPQNASITEAAKIMATH 101

Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (taxid: 243232)

>sp|P54606|YHCV_BACSU CBS domain-containing protein YhcV OS=Bacillus subtilis (strain 168) GN=yhcV PE=4 SV=1

 Score = 50.8 bits (120), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 50/86 (58%), Gaps = 6/86 (6%)

Query: 77  DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMT 136
           + T+ +A   M QHNVGA+ VV   EQ  + G++T+RD   +   QGR  + T V ++M+
Sbjct: 18  NQTIQEAASLMKQHNVGAIPVV---EQGVLKGMLTDRDIALRTTAQGRDGQ-TPVSEVMS 73

Query: 137 EENKLITVSPDTKVLRAMQLMTGHML 162
            E  L++ +P+  +  A QLM  H +
Sbjct: 74  TE--LVSGNPNMSLEDASQLMAQHQI 97

Bacillus subtilis (strain 168) (taxid: 224308)

>sp|O67500|Y1546_AQUAE Uncharacterized phosphosugar isomerase aq_1546 OS=Aquifex aeolicus (strain VF5) GN=aq_1546 PE=3 SV=1

 Score = 47.8 bits (112), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 49/84 (58%), Gaps = 5/84 (5%)

Query: 77  DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMT 136
           D ++ +A+  MT    GA  VV   E+  + GIIT+ D LR+ + +G S ++T+  D+MT
Sbjct: 215 DTSMKEAIIEMTAKGFGATAVVN--EEGKLVGIITDGD-LRRFVNRGGSFENTRAKDVMT 271

Query: 137 EENKLITVSPDTKVLRAMQLMTGH 160
           +  K  T+ PD   L+A++ M  H
Sbjct: 272 KNPK--TIKPDELALKALRKMEDH 293

Aquifex aeolicus (strain VF5) (taxid: 224324)

>sp|P50100|Y525_METKA Uncharacterized protein MK0525 OS=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) GN=MK0525 PE=4 SV=2

 Score = 47.4 bits (111), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 47/80 (58%), Gaps = 4/80 (5%)

Query: 78  DTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTE 137
           +T  +    M +H +G++V+V   E+    GIITERD + K++ QG++       DIM++
Sbjct: 21  ETAVEIAYKMREHGIGSVVIV--NEKDEPIGIITERDLVIKVVSQGKNPDEVIARDIMSQ 78

Query: 138 ENKLITVSPDTKVLRAMQLM 157
              +ITV  D +V  A++LM
Sbjct: 79  --PVITVEEDMEVNEAVKLM 96

Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) (taxid: 190192)

>sp|P21879|IMDH_BACSU Inosine-5'-monophosphate dehydrogenase OS=Bacillus subtilis (strain 168) GN=guaB PE=1 SV=2

 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 55/105 (52%), Gaps = 7/105 (6%)

Query: 58  DILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117
           D +K   +G   +  + T D  V+DA   M ++ +  + +V   E + + GIIT RD LR
Sbjct: 86  DKVKRSERGVITNPFFLTPDHQVFDAEHLMGKYRISGVPIVNNEEDQKLVGIITNRD-LR 144

Query: 118 KIIVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTGHML 162
            I     S  S K+ D+MT+E +L+T S  T +  A +++  H +
Sbjct: 145 FI-----SDYSMKISDVMTKE-ELVTASVGTTLDEAEKILQKHKI 183

Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth.

Bacillus subtilis (strain 168) (taxid: 224308)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 0

EC: 5

>sp|P32987|YBP3_ACIAM Uncharacterized 17.7 kDa protein in bps2 3'region OS=Acidianus ambivalens PE=4 SV=1

 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/90 (38%), Positives = 51/90 (56%), Gaps = 13/90 (14%)

Query: 79  TVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSK--STKVGDIMT 136
           T+ +A K M +HN+G+LVV+    Q  V GIITERD     IV+  S++   + V   MT
Sbjct: 21  TIAEAAKEMKEHNLGSLVVID--SQNRVVGIITERD-----IVKAASNRDIDSPVEKYMT 73

Query: 137 EENKLITVSPDTKVLRAMQLM--TGHMLLP 164
           ++ K +T   DT+V  A+ +M   G   LP
Sbjct: 74  KDVKGVT--EDTEVTDALDIMLNNGFRHLP 101

Acidianus ambivalens (taxid: 2283)

>sp|Q4L385|IMDH_STAHJ Inosine-5'-monophosphate dehydrogenase OS=Staphylococcus haemolyticus (strain JCSC1435) GN=guaB PE=3 SV=1

 Score = 43.9 bits (102), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 7/91 (7%)

Query: 72  LWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKV 131
            + T D++VY+A   M ++ +  + +V   E + + GI+T RD LR I        S K+
Sbjct: 100 FYLTPDESVYEAEALMGKYRISGVPIVSDKESRELVGILTNRD-LRFI-----EDFSIKI 153

Query: 132 GDIMTEENKLITVSPDTKVLRAMQLMTGHML 162
            D+MT+EN LIT    T +  A  ++  H +
Sbjct: 154 SDVMTKEN-LITAPVGTTLDEAETILQEHKI 183

Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth.

Staphylococcus haemolyticus (strain JCSC1435) (taxid: 279808)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 0

EC: 5

>sp|Q57892|Y450_METJA Uncharacterized protein MJ0450 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ0450 PE=4 SV=1

 Score = 43.5 bits (101), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 23/84 (27%), Positives = 46/84 (54%), Gaps = 2/84 (2%)

Query: 77  DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMT 136
           D +VYD  K M + +V  ++VV          + T++D ++K++++       KV DI +
Sbjct: 20  DVSVYDVAKLMVEQDVPCVLVVCERPNHESIEVATDKDIIKKVLIRKLPPDKVKVEDISS 79

Query: 137 EENKLITVSPDTKVLRAMQLMTGH 160
              KL+T+ P+T +  A+++M  +
Sbjct: 80  --GKLVTIPPNTTIDEALEIMNKY 101

Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (taxid: 243232)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	164
357491621	205	Cbs domain protein [Medicago truncatula]	0.969	0.775	0.861	5e-78
357491619	254	Cbs domain protein [Medicago truncatula]	0.963	0.622	0.860	6e-77
357491617	242	Cbs domain protein [Medicago truncatula]	0.963	0.652	0.860	7e-77
357491615	205	Cbs domain protein [Medicago truncatula]	0.963	0.770	0.860	1e-76
224127037	205	predicted protein [Populus trichocarpa]	0.963	0.770	0.848	1e-75
351722175	205	uncharacterized protein LOC100527191 [Gl	0.963	0.770	0.841	1e-74
225434277	205	PREDICTED: CBS domain-containing protein	0.963	0.770	0.854	4e-74
297745725	262	unnamed protein product [Vitis vinifera]	0.963	0.603	0.854	6e-74
388511535	205	unknown [Lotus japonicus]	0.963	0.770	0.816	4e-73
351727132	206	uncharacterized protein LOC100306364 [Gl	0.987	0.786	0.796	2e-72

>gi|357491621|ref|XP_003616098.1| Cbs domain protein [Medicago truncatula] gi|355517433|gb|AES99056.1| Cbs domain protein [Medicago truncatula]

 Score =  295 bits (754), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 137/159 (86%), Positives = 153/159 (96%)

Query: 1   MQGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVVSSRFESVSSARMEEHGFESTTISDIL 60
           MQG ++SFLS+GN++K+AVLQR+R+VNP+L+PV  SRFES + AR+EEHGFESTTISDIL
Sbjct: 38  MQGGLRSFLSNGNVIKNAVLQRVRMVNPLLQPVAFSRFESATPARIEEHGFESTTISDIL 97

Query: 61  KAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII 120
           K KGKGADGSWLWCTTDDTVYDAVKSMTQ+NVGALVVVKPGE+KS+AGIITERDYLRKII
Sbjct: 98  KGKGKGADGSWLWCTTDDTVYDAVKSMTQNNVGALVVVKPGEEKSIAGIITERDYLRKII 157

Query: 121 VQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTG 159
           VQGRSSKSTKVGDIMTEENKLITV+PDTKVLRAMQLMTG
Sbjct: 158 VQGRSSKSTKVGDIMTEENKLITVTPDTKVLRAMQLMTG 196

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357491619|ref|XP_003616097.1| Cbs domain protein [Medicago truncatula] gi|355517432|gb|AES99055.1| Cbs domain protein [Medicago truncatula]

 Score =  291 bits (745), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 136/158 (86%), Positives = 152/158 (96%)

Query: 1   MQGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVVSSRFESVSSARMEEHGFESTTISDIL 60
           MQG ++SFLS+GN++K+AVLQR+R+VNP+L+PV  SRFES + AR+EEHGFESTTISDIL
Sbjct: 50  MQGGLRSFLSNGNVIKNAVLQRVRMVNPLLQPVAFSRFESATPARIEEHGFESTTISDIL 109

Query: 61  KAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII 120
           K KGKGADGSWLWCTTDDTVYDAVKSMTQ+NVGALVVVKPGE+KS+AGIITERDYLRKII
Sbjct: 110 KGKGKGADGSWLWCTTDDTVYDAVKSMTQNNVGALVVVKPGEEKSIAGIITERDYLRKII 169

Query: 121 VQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMT 158
           VQGRSSKSTKVGDIMTEENKLITV+PDTKVLRAMQLMT
Sbjct: 170 VQGRSSKSTKVGDIMTEENKLITVTPDTKVLRAMQLMT 207

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357491617|ref|XP_003616096.1| Cbs domain protein [Medicago truncatula] gi|355517431|gb|AES99054.1| Cbs domain protein [Medicago truncatula]

 Score =  291 bits (745), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 136/158 (86%), Positives = 152/158 (96%)

Query: 1   MQGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVVSSRFESVSSARMEEHGFESTTISDIL 60
           MQG ++SFLS+GN++K+AVLQR+R+VNP+L+PV  SRFES + AR+EEHGFESTTISDIL
Sbjct: 38  MQGGLRSFLSNGNVIKNAVLQRVRMVNPLLQPVAFSRFESATPARIEEHGFESTTISDIL 97

Query: 61  KAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII 120
           K KGKGADGSWLWCTTDDTVYDAVKSMTQ+NVGALVVVKPGE+KS+AGIITERDYLRKII
Sbjct: 98  KGKGKGADGSWLWCTTDDTVYDAVKSMTQNNVGALVVVKPGEEKSIAGIITERDYLRKII 157

Query: 121 VQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMT 158
           VQGRSSKSTKVGDIMTEENKLITV+PDTKVLRAMQLMT
Sbjct: 158 VQGRSSKSTKVGDIMTEENKLITVTPDTKVLRAMQLMT 195

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357491615|ref|XP_003616095.1| Cbs domain protein [Medicago truncatula] gi|217073214|gb|ACJ84966.1| unknown [Medicago truncatula] gi|355517430|gb|AES99053.1| Cbs domain protein [Medicago truncatula] gi|388522955|gb|AFK49539.1| unknown [Medicago truncatula]

 Score =  290 bits (743), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 136/158 (86%), Positives = 152/158 (96%)

Query: 1   MQGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVVSSRFESVSSARMEEHGFESTTISDIL 60
           MQG ++SFLS+GN++K+AVLQR+R+VNP+L+PV  SRFES + AR+EEHGFESTTISDIL
Sbjct: 1   MQGGLRSFLSNGNVIKNAVLQRVRMVNPLLQPVAFSRFESATPARIEEHGFESTTISDIL 60

Query: 61  KAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII 120
           K KGKGADGSWLWCTTDDTVYDAVKSMTQ+NVGALVVVKPGE+KS+AGIITERDYLRKII
Sbjct: 61  KGKGKGADGSWLWCTTDDTVYDAVKSMTQNNVGALVVVKPGEEKSIAGIITERDYLRKII 120

Query: 121 VQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMT 158
           VQGRSSKSTKVGDIMTEENKLITV+PDTKVLRAMQLMT
Sbjct: 121 VQGRSSKSTKVGDIMTEENKLITVTPDTKVLRAMQLMT 158

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127037|ref|XP_002319991.1| predicted protein [Populus trichocarpa] gi|222858367|gb|EEE95914.1| predicted protein [Populus trichocarpa]

 Score =  287 bits (734), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 134/158 (84%), Positives = 152/158 (96%)

Query: 1   MQGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVVSSRFESVSSARMEEHGFESTTISDIL 60
           MQGA+++ L+HGN+VK ++LQ +R+++P+LRP+V SRFESVSSAR+EEHGFEST I+DIL
Sbjct: 1   MQGALRACLTHGNVVKDSLLQHVRVLSPLLRPIVFSRFESVSSARIEEHGFESTRIADIL 60

Query: 61  KAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII 120
           K KGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKS+AGIITERDYLRKII
Sbjct: 61  KEKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSIAGIITERDYLRKII 120

Query: 121 VQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMT 158
           VQGRSSKSTKVGDIMTEENKLITV+PDTKVL+AMQLMT
Sbjct: 121 VQGRSSKSTKVGDIMTEENKLITVTPDTKVLKAMQLMT 158

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722175|ref|NP_001236211.1| uncharacterized protein LOC100527191 [Glycine max] gi|255631750|gb|ACU16242.1| unknown [Glycine max]

 Score =  284 bits (726), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 133/158 (84%), Positives = 149/158 (94%)

Query: 1   MQGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVVSSRFESVSSARMEEHGFESTTISDIL 60
           MQG  QSFLSHGN++++AVLQR+R+VNP+L+P+VSSRFESV+ AR+EEHGFESTTISDIL
Sbjct: 1   MQGGFQSFLSHGNVIRNAVLQRVRMVNPLLQPIVSSRFESVTPARIEEHGFESTTISDIL 60

Query: 61  KAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII 120
             KGKGADGSWLWCTTDDTVYDAVKSMTQ+NVGALVVVK    K++AGIITERDYLRKII
Sbjct: 61  NDKGKGADGSWLWCTTDDTVYDAVKSMTQNNVGALVVVKSDANKAIAGIITERDYLRKII 120

Query: 121 VQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMT 158
           VQGRSSKSTKVGDIMTEENKLITV+PDTKVL+AMQLMT
Sbjct: 121 VQGRSSKSTKVGDIMTEENKLITVTPDTKVLQAMQLMT 158

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225434277|ref|XP_002262902.1| PREDICTED: CBS domain-containing protein CBSX3, mitochondrial isoform 1 [Vitis vinifera] gi|225434279|ref|XP_002262927.1| PREDICTED: CBS domain-containing protein CBSX3, mitochondrial isoform 2 [Vitis vinifera] gi|225434281|ref|XP_002262956.1| PREDICTED: CBS domain-containing protein CBSX3, mitochondrial isoform 3 [Vitis vinifera]

 Score =  282 bits (721), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 135/158 (85%), Positives = 149/158 (94%)

Query: 1   MQGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVVSSRFESVSSARMEEHGFESTTISDIL 60
           MQGAIQ+ +SHG+IVK+AVL +IRLVNP++  VV SR +SV+SARMEEHGFESTTI+D+L
Sbjct: 1   MQGAIQAIVSHGSIVKNAVLHQIRLVNPIMPSVVFSRLQSVTSARMEEHGFESTTIADVL 60

Query: 61  KAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII 120
           K KGK ADGSWLWCTTDD+VYDAVKSMT HNVGALVVVKPGEQKS+AGIITERDYLRKII
Sbjct: 61  KGKGKSADGSWLWCTTDDSVYDAVKSMTHHNVGALVVVKPGEQKSIAGIITERDYLRKII 120

Query: 121 VQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMT 158
           VQGRSSKSTKVGDIMTEENKLITVSP+TKVLRAMQLMT
Sbjct: 121 VQGRSSKSTKVGDIMTEENKLITVSPNTKVLRAMQLMT 158

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297745725|emb|CBI15781.3| unnamed protein product [Vitis vinifera]

 Score =  281 bits (719), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 135/158 (85%), Positives = 149/158 (94%)

Query: 1   MQGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVVSSRFESVSSARMEEHGFESTTISDIL 60
           MQGAIQ+ +SHG+IVK+AVL +IRLVNP++  VV SR +SV+SARMEEHGFESTTI+D+L
Sbjct: 58  MQGAIQAIVSHGSIVKNAVLHQIRLVNPIMPSVVFSRLQSVTSARMEEHGFESTTIADVL 117

Query: 61  KAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII 120
           K KGK ADGSWLWCTTDD+VYDAVKSMT HNVGALVVVKPGEQKS+AGIITERDYLRKII
Sbjct: 118 KGKGKSADGSWLWCTTDDSVYDAVKSMTHHNVGALVVVKPGEQKSIAGIITERDYLRKII 177

Query: 121 VQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMT 158
           VQGRSSKSTKVGDIMTEENKLITVSP+TKVLRAMQLMT
Sbjct: 178 VQGRSSKSTKVGDIMTEENKLITVSPNTKVLRAMQLMT 215

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388511535|gb|AFK43829.1| unknown [Lotus japonicus]

 Score =  278 bits (712), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 129/158 (81%), Positives = 150/158 (94%)

Query: 1   MQGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVVSSRFESVSSARMEEHGFESTTISDIL 60
           MQG +++  S GN++K+AVLQ++R+VNP+L+PV  SR+ESVS AR+EEHGFESTTI+DIL
Sbjct: 1   MQGGMRAIFSRGNVIKNAVLQQVRMVNPLLKPVAFSRYESVSPARIEEHGFESTTIADIL 60

Query: 61  KAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII 120
           KAKGKGADGSWLWCTT+DTVY+AVKSMTQ+NVGALVVVKP E+KS+AGIITERDYLRKII
Sbjct: 61  KAKGKGADGSWLWCTTEDTVYEAVKSMTQNNVGALVVVKPAEEKSIAGIITERDYLRKII 120

Query: 121 VQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMT 158
           VQGRSSKSTKVGDIMTEENKLITV+PDT+VLRAMQLMT
Sbjct: 121 VQGRSSKSTKVGDIMTEENKLITVTPDTRVLRAMQLMT 158

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351727132|ref|NP_001237662.1| uncharacterized protein LOC100306364 [Glycine max] gi|255628307|gb|ACU14498.1| unknown [Glycine max]

 Score =  276 bits (706), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 129/162 (79%), Positives = 149/162 (91%)

Query: 1   MQGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVVSSRFESVSSARMEEHGFESTTISDIL 60
           MQG ++SFLSHGN++++AVLQR+R+VNP+L+ + SSRFESV+ AR+EEHGFESTTISDIL
Sbjct: 1   MQGGMRSFLSHGNVIRNAVLQRVRMVNPLLQTIASSRFESVTPARIEEHGFESTTISDIL 60

Query: 61  KAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII 120
             KGKGADGSWLWCTTDDTVYDAVKSMTQ+NVGALVVVK    K++ GIITERDYLRKII
Sbjct: 61  NDKGKGADGSWLWCTTDDTVYDAVKSMTQNNVGALVVVKSDANKAITGIITERDYLRKII 120

Query: 121 VQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTGHML 162
           VQGRSSKSTKVGDIMTEENKLITV+PDTKVL+AMQLMT + +
Sbjct: 121 VQGRSSKSTKVGDIMTEENKLITVTPDTKVLQAMQLMTDNRI 162

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	164
TAIR|locus:2183740	206	CBSX3 "AT5G10860" [Arabidopsis	0.987	0.786	0.785	1.1e-64
TAIR|locus:4515102654	193	AT1G47271 "AT1G47271" [Arabido	0.847	0.720	0.492	3.7e-32
UNIPROTKB|Q48IU0	146	PSPPH_2494 "CBS domain protein	0.487	0.547	0.453	3.9e-12
UNIPROTKB|Q0BYV1	144	HNE_2660 "CBS domain protein"	0.573	0.652	0.336	7.6e-09
UNIPROTKB|Q81UY6	139	BAS0687 "CBS domain protein" [	0.487	0.575	0.336	1.6e-08
TIGR_CMR|BA_0720	139	BA_0720 "CBS domain protein" [	0.487	0.575	0.336	1.6e-08
UNIPROTKB|Q60B97	150	MCA0583 "CBS domain protein" [	0.5	0.546	0.341	6.8e-08
UNIPROTKB|Q3AEY2	213	CHY_0441 "CBS domain protein"	0.493	0.380	0.333	5.6e-07
TIGR_CMR|CHY_0441	213	CHY_0441 "CBS domain protein"	0.493	0.380	0.333	5.6e-07
UNIPROTKB|Q5LRC8	144	SPO2201 "CBS domain protein" [	0.554	0.631	0.322	3.4e-06

TAIR|locus:2183740 CBSX3 "AT5G10860" [Arabidopsis thaliana (taxid:3702)]

 Score = 659 (237.0 bits), Expect = 1.1e-64, P = 1.1e-64
 Identities = 128/163 (78%), Positives = 147/163 (90%)

Query:     1 MQGAIQSFLSHGNIVKSAVLQRIRLVNPMLRP-VVSSRFESVSSARMEEHGFESTTISDI 59
             MQG I+SF+S GN+VK +VLQ +R++NP ++P V  SR ES   ARMEE GFESTTISD+
Sbjct:     1 MQGVIRSFVSGGNVVKGSVLQHLRVINPAIQPSVFCSRSESTQPARMEESGFESTTISDV 60

Query:    60 LKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI 119
             +K+KGK ADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ+++AGIITERDYLRKI
Sbjct:    61 MKSKGKSADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQQALAGIITERDYLRKI 120

Query:   120 IVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTGHML 162
             IVQGRSSKSTKVGDIMTEENKLITV+P+TKVLRAMQLMT + +
Sbjct:   121 IVQGRSSKSTKVGDIMTEENKLITVTPETKVLRAMQLMTDNRI 163

GO:0005739 "mitochondrion" evidence=IDA

GO:0009651 "response to salt stress" evidence=IEP;RCA

GO:0050897 "cobalt ion binding" evidence=IDA

GO:0045454 "cell redox homeostasis" evidence=IDA

GO:0006096 "glycolysis" evidence=RCA

GO:0006833 "water transport" evidence=RCA

GO:0006972 "hyperosmotic response" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0009266 "response to temperature stimulus" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

TAIR|locus:4515102654 AT1G47271 "AT1G47271" [Arabidopsis thaliana (taxid:3702)]

 Score = 352 (129.0 bits), Expect = 3.7e-32, P = 3.7e-32
 Identities = 69/140 (49%), Positives = 103/140 (73%)

Query:    19 VLQRIRLVNPMLRPVVSSRFESVSSARMEEHGFESTTISDILKAKGKGADGSWLWCTTDD 78
             +L R   V  + +  VS+ F  ++S    E G E+ T++D+L  K    D +W+ C T+D
Sbjct:     8 LLARANEVPKIHQRKVSAGFGCLTSPPPPEKGLENLTVADVLSTKDTDID-TWISCRTND 66

Query:    79 TVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEE 138
             TV DAVK+M +HN+G+LVV++PG+Q+ +AGI+TERDY++KII  GRSSK TKVG++MT+E
Sbjct:    67 TVSDAVKNMAKHNIGSLVVLEPGDQQYIAGIVTERDYMKKIIGAGRSSKLTKVGEVMTDE 126

Query:   139 NKLITVSPDTKVLRAMQLMT 158
             +KL+TVS  T +++AMQLM+
Sbjct:   127 SKLVTVSSGTNIIKAMQLMS 146

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q48IU0 PSPPH_2494 "CBS domain protein" [Pseudomonas syringae pv. phaseolicola 1448A (taxid:264730)]

 Score = 163 (62.4 bits), Expect = 3.9e-12, P = 3.9e-12
 Identities = 39/86 (45%), Positives = 54/86 (62%)

Query:    77 DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMT 136
             D  V DA++ M + N+GAL VV   E   V G+++ERDY RK+I++GRSS  T V +IM+
Sbjct:    24 DQMVLDALRLMAEKNIGALPVV---EGNVVVGVVSERDYARKVILKGRSSVGTPVREIMS 80

Query:   137 EENKLITVSPDTKVLRAMQLMT-GHM 161
               NK+ITV     V   M +MT  H+
Sbjct:    81 --NKVITVDSQQSVEACMGIMTDSHL 104

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q0BYV1 HNE_2660 "CBS domain protein" [Hyphomonas neptunium ATCC 15444 (taxid:228405)]

 Score = 132 (51.5 bits), Expect = 7.6e-09, P = 7.6e-09
 Identities = 35/104 (33%), Positives = 57/104 (54%)

Query:    56 ISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKP-GEQKSVAGIITERD 114
             I  IL  KG+      +    DDT+ +A + + +  +GA+V +   GE   + G+++ERD
Sbjct:     3 IEQILNDKGREV----ITLRADDTLREAARLLDERRIGAVVTLDADGE---IVGVLSERD 55

Query:   115 YLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMT 158
              +R+   QG  +    VG+ MT    +IT+S D +V  A+QLMT
Sbjct:    56 IVRQFARQGEGALDMPVGNAMTRA--VITISADAEVDEALQLMT 97

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q81UY6 BAS0687 "CBS domain protein" [Bacillus anthracis (taxid:1392)]

 Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
 Identities = 31/92 (33%), Positives = 54/92 (58%)

Query:    74 CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSK---STK 130
             CT  D VY+A   M + ++G + VV   E + V G++T+RD    ++V+G + K   S K
Sbjct:    15 CTPLDNVYEAAVKMKEESIGLIPVV---ENEQVVGLVTDRD----LVVRGIAEKHPGSNK 67

Query:   131 VGDIMTEENKLITVSPDTKVLRAMQLMTGHML 162
             + ++MT    +I+V+PD  + +A +LM  H +
Sbjct:    68 ITNVMT--TNIISVAPDDSLEKATELMAQHQI 97

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|BA_0720 BA_0720 "CBS domain protein" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
 Identities = 31/92 (33%), Positives = 54/92 (58%)

Query:    74 CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSK---STK 130
             CT  D VY+A   M + ++G + VV   E + V G++T+RD    ++V+G + K   S K
Sbjct:    15 CTPLDNVYEAAVKMKEESIGLIPVV---ENEQVVGLVTDRD----LVVRGIAEKHPGSNK 67

Query:   131 VGDIMTEENKLITVSPDTKVLRAMQLMTGHML 162
             + ++MT    +I+V+PD  + +A +LM  H +
Sbjct:    68 ITNVMT--TNIISVAPDDSLEKATELMAQHQI 97

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q60B97 MCA0583 "CBS domain protein" [Methylococcus capsulatus str. Bath (taxid:243233)]

 Score = 123 (48.4 bits), Expect = 6.8e-08, P = 6.8e-08
 Identities = 29/85 (34%), Positives = 48/85 (56%)

Query:    77 DDTVYDAVKSMTQHNVGALVVVKPGEQK-SVAGIITERDYLRKIIVQGRSSKSTKVGDIM 135
             DDT+ +A K M  H+VG++VVV+  E      GI+T+RD + +I+ +  +  +  VGD+M
Sbjct:    17 DDTIVEAAKVMRAHHVGSVVVVEEAEGGCKPLGILTDRDLVVEILAEEVAPDAVTVGDVM 76

Query:   136 TEENKLITVSPDTKVLRAMQLMTGH 160
             + E  L+T      +   +Q M  H
Sbjct:    77 SFE--LVTAQEQDGLWETLQRMRAH 99

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q3AEY2 CHY_0441 "CBS domain protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 112 (44.5 bits), Expect = 5.6e-07, Sum P(2) = 5.6e-07
 Identities = 28/84 (33%), Positives = 44/84 (52%)

Query:    79 TVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEE 138
             TVYDA+ +M   +VG + VV   E+  + G+ + +D L K  + G+      VG +MT  
Sbjct:    95 TVYDAIVTMFIEDVGTIFVVS--EEGFLEGLASRKDML-KATMGGKDINKLPVGVVMTRM 151

Query:   139 NKLITVSPDTKVLRAMQLMTGHML 162
               +I   PD  VLRA + +  H +
Sbjct:   152 PNIIVTYPDESVLRAAEKLIHHQV 175

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CHY_0441 CHY_0441 "CBS domain protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 112 (44.5 bits), Expect = 5.6e-07, Sum P(2) = 5.6e-07
 Identities = 28/84 (33%), Positives = 44/84 (52%)

Query:    79 TVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEE 138
             TVYDA+ +M   +VG + VV   E+  + G+ + +D L K  + G+      VG +MT  
Sbjct:    95 TVYDAIVTMFIEDVGTIFVVS--EEGFLEGLASRKDML-KATMGGKDINKLPVGVVMTRM 151

Query:   139 NKLITVSPDTKVLRAMQLMTGHML 162
               +I   PD  VLRA + +  H +
Sbjct:   152 PNIIVTYPDESVLRAAEKLIHHQV 175

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q5LRC8 SPO2201 "CBS domain protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 107 (42.7 bits), Expect = 3.4e-06, P = 3.4e-06
 Identities = 31/96 (32%), Positives = 47/96 (48%)

Query:    63 KGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQ 122
             K K +DG  +  +   TV  A   + +  +G +VV   GE  +  GI++ERD +R++   
Sbjct:     8 KSKASDGV-VTVSAAATVAQAAAILAEKRIGTVVVSDDGE--TAQGILSERDIVRELAAS 64

Query:   123 GRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMT 158
             G    S  V   MT++  LIT   D KV   +  MT
Sbjct:    65 GSGCLSEPVSTYMTKD--LITCGRDAKVQDVLSQMT 98

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LEV3	CBSX3_ARATH	No assigned EC number	0.8050	0.9634	0.7669	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00131316 hypothetical protein (205 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	164
cd04623	113	cd04623, CBS_pair_10, The CBS domain, named after	3e-32
cd04622	113	cd04622, CBS_pair_9, The CBS domain, named after h	1e-18
cd04800	111	cd04800, CBS_pair_CAP-ED_DUF294_PBI_assoc2, This c	2e-18
cd04630	114	cd04630, CBS_pair_17, The CBS domain, named after	4e-14
cd04802	112	cd04802, CBS_pair_3, The CBS domain, named after h	5e-14
cd02205	113	cd02205, CBS_pair, The CBS domain, named after hum	2e-13
cd04587	113	cd04587, CBS_pair_CAP-ED_DUF294_PBI_assoc, This cd	1e-12
cd04624	112	cd04624, CBS_pair_11, The CBS domain, named after	6e-12
COG0517	117	COG0517, COG0517, FOG: CBS domain [General functio	8e-12
COG2905	610	COG2905, COG2905, Predicted signal-transduction pr	2e-10
cd04611	111	cd04611, CBS_pair_PAS_GGDEF_DUF1_assoc, This cd co	2e-10
cd04604	114	cd04604, CBS_pair_KpsF_GutQ_assoc, This cd contain	4e-10
cd04625	112	cd04625, CBS_pair_12, The CBS domain, named after	1e-09
cd04589	111	cd04589, CBS_pair_CAP-ED_DUF294_assoc_bac, This cd	5e-09
cd04601	110	cd04601, CBS_pair_IMPDH, This cd contains two tand	8e-09
cd04595	110	cd04595, CBS_pair_DHH_polyA_Pol_assoc, This cd con	1e-08
cd04617	118	cd04617, CBS_pair_4, The CBS domain, named after h	1e-08
cd04599	105	cd04599, CBS_pair_GGDEF_assoc2, This cd contains t	3e-08
cd04609	110	cd04609, CBS_pair_PALP_assoc2, This cd contains tw	4e-08
cd04633	121	cd04633, CBS_pair_20, The CBS domain, named after	1e-07
cd04621	135	cd04621, CBS_pair_8, The CBS domain, named after h	2e-07
cd04585	122	cd04585, CBS_pair_ACT_assoc2, This cd contains two	3e-07
PRK05567	486	PRK05567, PRK05567, inosine 5'-monophosphate dehyd	3e-07
cd04586	135	cd04586, CBS_pair_BON_assoc, This cd contains two	3e-07
cd04600	124	cd04600, CBS_pair_HPP_assoc, This cd contains two	3e-07
cd04637	122	cd04637, CBS_pair_24, The CBS domain, named after	5e-07
cd04631	125	cd04631, CBS_pair_18, The CBS domain, named after	6e-07
cd04631	125	cd04631, CBS_pair_18, The CBS domain, named after	1e-06
cd04803	122	cd04803, CBS_pair_15, The CBS domain, named after	1e-06
cd04629	114	cd04629, CBS_pair_16, The CBS domain, named after	1e-06
cd04634	143	cd04634, CBS_pair_21, The CBS domain, named after	3e-06
cd04612	111	cd04612, CBS_pair_SpoIVFB_EriC_assoc, This cd cont	5e-06
COG3448	382	COG3448, COG3448, CBS-domain-containing membrane p	6e-06
COG3620	187	COG3620, COG3620, Predicted transcriptional regula	6e-06
cd04584	121	cd04584, CBS_pair_ACT_assoc, This cd contains two	8e-06
cd04620	115	cd04620, CBS_pair_7, The CBS domain, named after h	8e-06
pfam00571	57	pfam00571, CBS, CBS domain	9e-06
TIGR01302	450	TIGR01302, IMP_dehydrog, inosine-5'-monophosphate	2e-05
cd04588	110	cd04588, CBS_pair_CAP-ED_DUF294_assoc_arch, This c	3e-05
smart00116	49	smart00116, CBS, Domain in cystathionine beta-synt	5e-05
cd04622	113	cd04622, CBS_pair_9, The CBS domain, named after h	1e-04
cd04632	128	cd04632, CBS_pair_19, The CBS domain, named after	3e-04
cd04613	114	cd04613, CBS_pair_SpoIVFB_EriC_assoc2, This cd con	3e-04
cd04636	132	cd04636, CBS_pair_23, The CBS domain, named after	3e-04
PRK14869	546	PRK14869, PRK14869, putative manganese-dependent i	3e-04
cd04800	111	cd04800, CBS_pair_CAP-ED_DUF294_PBI_assoc2, This c	4e-04
cd02205	113	cd02205, CBS_pair, The CBS domain, named after hum	5e-04
cd04588	110	cd04588, CBS_pair_CAP-ED_DUF294_assoc_arch, This c	9e-04
cd04621	135	cd04621, CBS_pair_8, The CBS domain, named after h	0.001
cd04584	121	cd04584, CBS_pair_ACT_assoc, This cd contains two	0.001
cd04638	106	cd04638, CBS_pair_25, The CBS domain, named after	0.001
cd04635	122	cd04635, CBS_pair_22, The CBS domain, named after	0.001
PRK07107	502	PRK07107, PRK07107, inosine 5-monophosphate dehydr	0.001
cd04612	111	cd04612, CBS_pair_SpoIVFB_EriC_assoc, This cd cont	0.002
COG2524	294	COG2524, COG2524, Predicted transcriptional regula	0.002
COG2524	294	COG2524, COG2524, Predicted transcriptional regula	0.003
cd04583	109	cd04583, CBS_pair_ABC_OpuCA_assoc2, This cd contai	0.003

>gnl|CDD|239995 cd04623, CBS_pair_10, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score =  110 bits (278), Expect = 3e-32
 Identities = 38/92 (41%), Positives = 54/92 (58%), Gaps = 4/92 (4%)

Query: 69  GSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKS 128
              +    D TV +A K M + N+GA+VVV  G +  + GI +ERD +RK+ ++G S+  
Sbjct: 1   RDVITVRPDATVAEAAKLMAEKNIGAVVVVDDGGR--LVGIFSERDIVRKVALRGASALD 58

Query: 129 TKVGDIMTEENKLITVSPDTKVLRAMQLMTGH 160
           T V +IMT    +ITV+PD  V  AM LMT  
Sbjct: 59  TPVSEIMTR--NVITVTPDDTVDEAMALMTER 88

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|239994 cd04622, CBS_pair_9, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 75.6 bits (187), Expect = 1e-18
 Identities = 33/88 (37%), Positives = 52/88 (59%), Gaps = 5/88 (5%)

Query: 73  WCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVG 132
             + DDT+ +A + M +H+VGAL V    E   + GI+T+RD + + + +GR   +T VG
Sbjct: 5   TVSPDDTIREAARLMREHDVGALPVC---ENDRLVGIVTDRDIVVRAVAEGRDPDTTTVG 61

Query: 133 DIMTEENKLITVSPDTKVLRAMQLMTGH 160
           D+MT    ++TV+ D  V  A +LM  H
Sbjct: 62  DVMTRG--VVTVTEDDDVDEAARLMREH 87

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|240113 cd04800, CBS_pair_CAP-ED_DUF294_PBI_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

 Score = 75.2 bits (186), Expect = 2e-18
 Identities = 30/89 (33%), Positives = 49/89 (55%), Gaps = 6/89 (6%)

Query: 72  LWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKV 131
           + C+ D T+ +A + MT+H V +L+VV  G    + GI+T+RD   +++ +G     T V
Sbjct: 4   VTCSPDTTIREAARLMTEHRVSSLLVVDDGR---LVGIVTDRDLRNRVVAEGLDP-DTPV 59

Query: 132 GDIMTEENKLITVSPDTKVLRAMQLMTGH 160
            ++MT     IT+ PD  V  A+ LM   
Sbjct: 60  SEVMTAP--PITIPPDATVFEALLLMLER 86

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|240001 cd04630, CBS_pair_17, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 64.6 bits (158), Expect = 4e-14
 Identities = 32/80 (40%), Positives = 47/80 (58%), Gaps = 3/80 (3%)

Query: 79  TVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEE 138
           TV +A++ M +H V +LVV K  E     GI+T RD L+K++ +GR      V +IMT+ 
Sbjct: 11  TVAEALQLMKEHGVSSLVVEKRRES-DAYGIVTMRDILKKVVAEGRDPDRVNVYEIMTK- 68

Query: 139 NKLITVSPDTKVLRAMQLMT 158
             LI+VSPD  +    +LM 
Sbjct: 69  -PLISVSPDMDIKYCARLME 87

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 114

>gnl|CDD|240115 cd04802, CBS_pair_3, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 63.9 bits (156), Expect = 5e-14
 Identities = 31/86 (36%), Positives = 50/86 (58%), Gaps = 5/86 (5%)

Query: 75  TTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDI 134
             D TVY+A   MT++N+G L+VV   +     GIITERD ++K++ +    +   VG++
Sbjct: 7   DPDTTVYEAANIMTENNIGRLIVVDNEK---PVGIITERDLVKKVVSRNLKPREVPVGEV 63

Query: 135 MTEENKLITVSPDTKVLRAMQLMTGH 160
           M+    LIT+ P+  +  A +LM  H
Sbjct: 64  MS--TPLITIDPNASLNEAAKLMAKH 87

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 112

>gnl|CDD|239067 cd02205, CBS_pair, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 62.4 bits (152), Expect = 2e-13
 Identities = 33/87 (37%), Positives = 51/87 (58%), Gaps = 5/87 (5%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGD 133
            + DDTV +A++ M +H +  L VV   +   + GI+TERD L + + +G       VGD
Sbjct: 6   VSPDDTVAEALRLMLEHGISGLPVVD--DDGRLVGIVTERD-LLRALAEGGLDPLVTVGD 62

Query: 134 IMTEENKLITVSPDTKVLRAMQLMTGH 160
           +MT +  ++TVSPDT +  A +LM  H
Sbjct: 63  VMTRD--VVTVSPDTSLEEAAELMLEH 87

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|239960 cd04587, CBS_pair_CAP-ED_DUF294_PBI_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

 Score = 60.3 bits (147), Expect = 1e-12
 Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 5/84 (5%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGD 133
            +   TV +A K M +  V  ++V+   +   + GI T +D   +++ QG   +ST V  
Sbjct: 6   VSPTTTVQEAAKLMREKRVSCVLVM---DGNKLVGIFTSKDIALRVVAQGLDPESTLVER 62

Query: 134 IMTEENKLITVSPDTKVLRAMQLM 157
           +MT     +  + DT VL A+ LM
Sbjct: 63  VMTPNP--VCATSDTPVLEALHLM 84

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 113

>gnl|CDD|239996 cd04624, CBS_pair_11, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 58.4 bits (142), Expect = 6e-12
 Identities = 34/87 (39%), Positives = 47/87 (54%), Gaps = 6/87 (6%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGD 133
              D ++ +A K M + NVG++VVV P E     GI+TERD +R  +  G     T V +
Sbjct: 6   VDPDTSIREAAKLMAEENVGSVVVVDPDE--RPIGIVTERDIVRA-VAAGIDL-DTPVSE 61

Query: 134 IMTEENKLITVSPDTKVLRAMQLMTGH 160
           IMT    L+TV PD  V  A +LM  +
Sbjct: 62  IMT--RDLVTVDPDEPVAEAAKLMRKN 86

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 112

>gnl|CDD|223591 COG0517, COG0517, FOG: CBS domain [General function prediction only]

 Score = 58.6 bits (142), Expect = 8e-12
 Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 7/87 (8%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGD 133
              D +V DA+  M+++ V A+ VV   +   + GIITERD LR +       +   V +
Sbjct: 12  VKPDTSVRDALLLMSENGVSAVPVV---DDGKLVGIITERDILRALA--AGGKRLLPVKE 66

Query: 134 IMTEENKLITVSPDTKVLRAMQLMTGH 160
           +MT    ++TV PDT +  A++LM   
Sbjct: 67  VMT--KPVVTVDPDTPLEEALELMVER 91

Length = 117

>gnl|CDD|225457 COG2905, COG2905, Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

 Score = 57.8 bits (140), Expect = 2e-10
 Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 5/85 (5%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGD 133
            +   ++ DA + M    V +LVV+         GI+T +D   ++I  GR SK+ KV +
Sbjct: 162 VSPQASIQDAARKMKDEGVSSLVVLDDSGPLL--GIVTRKDLRSRVIADGR-SKTQKVSE 218

Query: 134 IMTEENKLITVSPDTKVLRAMQLMT 158
           +MT    +I+V     +  AM +M 
Sbjct: 219 VMTSP--VISVDRGDFLFEAMLMML 241

Length = 610

>gnl|CDD|239984 cd04611, CBS_pair_PAS_GGDEF_DUF1_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

 Score = 54.5 bits (132), Expect = 2e-10
 Identities = 30/87 (34%), Positives = 48/87 (55%), Gaps = 7/87 (8%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGD 133
           C  D ++ +A   M +  + ++VVV  G      GI+TERD LR ++  G   ++  VG+
Sbjct: 6   CPPDTSLAEAASRMRERRISSIVVVDDGRP---LGIVTERDILR-LLASGPDLQTP-VGE 60

Query: 134 IMTEENKLITVSPDTKVLRAMQLMTGH 160
           +M+  + L+TV  DT +  A QLM  H
Sbjct: 61  VMS--SPLLTVPADTSLYDARQLMREH 85

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|239977 cd04604, CBS_pair_KpsF_GutQ_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

 Score = 54.0 bits (131), Expect = 4e-10
 Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 5/84 (5%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGD 133
            + D ++ DA+  M++  +G   VV   E   + GI T+ D LR+ + +G    +  V D
Sbjct: 7   VSPDTSLKDALLEMSRKGLGMTAVVD--EDGRLVGIFTDGD-LRRALEKGLDILTLPVAD 63

Query: 134 IMTEENKLITVSPDTKVLRAMQLM 157
           +MT      T+ PD     A++LM
Sbjct: 64  VMTR--NPKTIDPDALAAEALELM 85

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 114

>gnl|CDD|239997 cd04625, CBS_pair_12, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 52.8 bits (127), Expect = 1e-09
 Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 5/86 (5%)

Query: 77  DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMT 136
           +  + +AV +M + ++G+LVV++ GE   + G++T R+ L+ +   G     T V  IM 
Sbjct: 9   ETLLSEAVATMAEQDLGSLVVMERGE---LVGLLTFREVLQAMAQHGAGVLDTTVRAIMN 65

Query: 137 EENKLITVSPDTKVLRAMQLMTGHML 162
            E   I  SPD  +    +LM    L
Sbjct: 66  PEP--IVASPDDSIDEVRRLMVERHL 89

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 112

>gnl|CDD|239962 cd04589, CBS_pair_CAP-ED_DUF294_assoc_bac, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

 Score = 51.1 bits (123), Expect = 5e-09
 Identities = 31/84 (36%), Positives = 44/84 (52%), Gaps = 6/84 (7%)

Query: 77  DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMT 136
             ++ DA + M +H   AL+V        + GI+T  D L  +++ G  S ST VG+I T
Sbjct: 9   STSIRDAARLMREHGADALLV--RDGDPRL-GIVTRTDLLDAVLLDGLPS-STPVGEIAT 64

Query: 137 EENKLITVSPDTKVLRAMQLMTGH 160
               LITV PD  +  A+ LMT H
Sbjct: 65  --FPLITVDPDDFLFNALLLMTRH 86

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|239974 cd04601, CBS_pair_IMPDH, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

 Score = 50.2 bits (121), Expect = 8e-09
 Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 9/87 (10%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGD 133
            + D TV +A++ M ++ +  L VV   +   + GI+T RD LR       +     V +
Sbjct: 7   VSPDATVAEALELMAEYGISGLPVVD--DDGKLVGIVTNRD-LRFE-----TDLDKPVSE 58

Query: 134 IMTEENKLITVSPDTKVLRAMQLMTGH 160
           +MT EN L TV   T +  A++L+  H
Sbjct: 59  VMTPENLLTTV-EGTSLEEALELLHEH 84

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa. Length = 110

>gnl|CDD|239968 cd04595, CBS_pair_DHH_polyA_Pol_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

 Score = 49.9 bits (120), Expect = 1e-08
 Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 8/84 (9%)

Query: 77  DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMT 136
           + T+ +A + + ++   AL VV+ G    V GII+ RD + K +  G       V D M+
Sbjct: 10  EATIEEARELLLRYGHTALPVVEGGR---VVGIISRRD-VEKALRHGLG--HAPVKDYMS 63

Query: 137 EENKLITVSPDTKVLRAMQLMTGH 160
            +  ++TV PDT +    +LM  H
Sbjct: 64  TD--VVTVPPDTPLSEVQELMVEH 85

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

>gnl|CDD|239989 cd04617, CBS_pair_4, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 50.4 bits (121), Expect = 1e-08
 Identities = 25/84 (29%), Positives = 44/84 (52%), Gaps = 3/84 (3%)

Query: 77  DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMT 136
           + +VYDA+ ++   +VG+L VV   E   + G+++ +D L+  I      +   VG IMT
Sbjct: 9   NTSVYDAIVTLFLEDVGSLFVV--DEDGDLVGVVSRKDLLKASIGGA-DLQKVPVGVIMT 65

Query: 137 EENKLITVSPDTKVLRAMQLMTGH 160
               + T +P+  VL A + +  H
Sbjct: 66  RMPNITTTTPEESVLEAAKKLIEH 89

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 118

>gnl|CDD|239972 cd04599, CBS_pair_GGDEF_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

 Score = 48.6 bits (116), Expect = 3e-08
 Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 12/83 (14%)

Query: 78  DTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTE 137
           D+V  A + M +H +G L VV   E   + GIIT RD +R      R+  +  V D MT 
Sbjct: 10  DSVGRAARLMEKHRIGGLPVV---EDGKLVGIITSRD-VR------RAHPNRLVADAMTR 59

Query: 138 ENKLITVSPDTKVLRAMQLMTGH 160
           E  ++T+SP+  +L A +LM   
Sbjct: 60  E--VVTISPEASLLEAKRLMEEK 80

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 105

>gnl|CDD|239982 cd04609, CBS_pair_PALP_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

 Score = 48.3 bits (116), Expect = 4e-08
 Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 6/80 (7%)

Query: 77  DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMT 136
           DDTV  A++ M ++ V  L VV  G    V G I E D L   +++G++  S  V ++M 
Sbjct: 9   DDTVSQAIERMREYGVSQLPVVDDGR---VVGSIDESD-LLDALIEGKAKFSLPVREVMG 64

Query: 137 EENKLITVSPDTKVLRAMQL 156
           E   L TV PD  +    +L
Sbjct: 65  E--PLPTVDPDAPIEELSEL 82

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

>gnl|CDD|240004 cd04633, CBS_pair_20, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 47.3 bits (113), Expect = 1e-07
 Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 16/91 (17%)

Query: 77  DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTK------ 130
           DD V  A + M  H++  L V++ G+   + GI+TE+D     +   R     +      
Sbjct: 9   DDRVSHARRLMLDHDISRLPVIEGGK---LVGIVTEKDIADA-LRSFRPLVRDRHQERRI 64

Query: 131 ----VGDIMTEENKLITVSPDTKVLRAMQLM 157
               V DIMT    +IT+ PDT V     LM
Sbjct: 65  RNLPVSDIMTRP--VITIEPDTSVSDVASLM 93

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 121

>gnl|CDD|239993 cd04621, CBS_pair_8, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 47.0 bits (112), Expect = 2e-07
 Identities = 29/104 (27%), Positives = 42/104 (40%), Gaps = 26/104 (25%)

Query: 79  TVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERD------------YLRKIIVQGRSS 126
           ++   V  M ++ VG ++VV   +     G+IT RD              +K I   R +
Sbjct: 11  SLLHVVDEMEKNGVGRVIVVD--DNGKPVGVITYRDLAFAEFEDNERGLPKKSIKMKRKA 68

Query: 127 K----------STKVGDIMTEENKLITVSPDTKVLRAMQLMTGH 160
                           DIMTEE   ITVSP+  V+ A +LM   
Sbjct: 69  GQKRYRYVKEVPLVAEDIMTEEI--ITVSPNDDVVDAAKLMLEA 110

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 135

>gnl|CDD|239958 cd04585, CBS_pair_ACT_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

 Score = 46.5 bits (111), Expect = 3e-07
 Identities = 33/97 (34%), Positives = 48/97 (49%), Gaps = 24/97 (24%)

Query: 75  TTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKST----- 129
           T D ++ +A+K M ++++  L VV  G+   + GI+T+RD     +     SK+T     
Sbjct: 7   TPDTSLMEALKLMKENSIRRLPVVDRGK---LVGIVTDRD-----LKLASPSKATTLDIW 58

Query: 130 ---------KVGDIMTEENKLITVSPDTKVLRAMQLM 157
                    KV DIMT     ITVSPD  V  A +LM
Sbjct: 59  ELYYLLSKIKVSDIMTR--DPITVSPDASVEEAAELM 93

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 122

>gnl|CDD|235507 PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed

 Score = 48.7 bits (117), Expect = 3e-07
 Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 9/87 (10%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGD 133
            T D T+ +A+  M ++ +  + VV   E   + GIIT RD +R       +  S  V +
Sbjct: 100 VTPDTTLAEALALMARYGISGVPVVD--ENGKLVGIITNRD-VRFE-----TDLSQPVSE 151

Query: 134 IMTEENKLITVSPDTKVLRAMQLMTGH 160
           +MT+E  L+TV   T +  A++L+  H
Sbjct: 152 VMTKER-LVTVPEGTTLEEALELLHEH 177

Length = 486

>gnl|CDD|239959 cd04586, CBS_pair_BON_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

 Score = 46.4 bits (111), Expect = 3e-07
 Identities = 26/105 (24%), Positives = 45/105 (42%), Gaps = 25/105 (23%)

Query: 77  DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI---IVQGRS-------- 125
           + +V +A + M  +++  L VV    +  + GI++E D LR+      + R+        
Sbjct: 10  ETSVAEAARLMLDNHISGLPVVDDDGR--LVGIVSEGDLLRRAELGTERRRARWLDLLAG 67

Query: 126 ----------SKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTGH 160
                     S   KV D+MT    ++TV  DT +    +LM  H
Sbjct: 68  AEELAAAFVRSHGRKVADVMTRP--VVTVGEDTPLAEVAELMEEH 110

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 135

>gnl|CDD|239973 cd04600, CBS_pair_HPP_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

 Score = 46.5 bits (111), Expect = 3e-07
 Identities = 29/98 (29%), Positives = 46/98 (46%), Gaps = 13/98 (13%)

Query: 72  LWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGR------- 124
           +  T D ++ +A   + +H + AL VV     + + GI+T+RD LR     GR       
Sbjct: 5   VTVTPDTSLEEAWALLRRHRIKALPVV--DGDRRLVGIVTQRDLLRHARPDGRRPLRGRL 62

Query: 125 --SSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTGH 160
               K   VGDIM+    ++TV PDT +   + L+   
Sbjct: 63  RGRDKPETVGDIMSPP--VVTVRPDTPIAELVPLLADG 98

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 124

>gnl|CDD|240008 cd04637, CBS_pair_24, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 45.8 bits (109), Expect = 5e-07
 Identities = 29/93 (31%), Positives = 46/93 (49%), Gaps = 14/93 (15%)

Query: 77  DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII----VQGRSSK----- 127
           DD + +  +   +H    L+VV+  E   + G+I++RDYL+ I       G + K     
Sbjct: 9   DDRLEEVREIFEKHKFHHLLVVEDNE---LVGVISDRDYLKAISPFLGTAGETEKDLATL 65

Query: 128 STKVGDIMTEENKLITVSPDTKVLRAMQLMTGH 160
           + +   IMT     ITVSPDT V  A +L+  +
Sbjct: 66  NRRAHQIMTR--DPITVSPDTPVDEASKLLLEN 96

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 122

>gnl|CDD|240002 cd04631, CBS_pair_18, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 45.7 bits (109), Expect = 6e-07
 Identities = 27/93 (29%), Positives = 40/93 (43%), Gaps = 13/93 (13%)

Query: 75  TTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR--------KIIVQGRSS 126
                + +A K M ++    L VV  G  K + GIIT  D L+          I  G   
Sbjct: 7   PPTTPIMEAAKIMVRNGFRRLPVVDEGTGK-LVGIITATDILKYLGGGEKFNKIKTGNGL 65

Query: 127 K--STKVGDIMTEENKLITVSPDTKVLRAMQLM 157
           +  +  V  IMT    +IT++PD  +  A +LM
Sbjct: 66  EAINEPVRSIMTRN--VITITPDDSIKDAAELM 96

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 125

>gnl|CDD|240002 cd04631, CBS_pair_18, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 45.0 bits (107), Expect = 1e-06
 Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 2/45 (4%)

Query: 73  WCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117
             T DD++ DA + M +  VG L VV   +   + GI+TERD L+
Sbjct: 82  TITPDDSIKDAAELMLEKRVGGLPVVD--DDGKLVGIVTERDLLK 124

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 125

>gnl|CDD|240116 cd04803, CBS_pair_15, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 44.9 bits (107), Expect = 1e-06
 Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 12/90 (13%)

Query: 76  TDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII--------VQGRSSK 127
            DD++ DA + M +H +  L VV   E   + G++T+RD LR  +              +
Sbjct: 8   EDDSLADAEELMREHRIRHLPVVN--EDGKLVGLLTQRDLLRAALSSLSDNGEESLTKER 65

Query: 128 STKVGDIMTEENKLITVSPDTKVLRAMQLM 157
              V ++M     ++TV+PDT +  A ++M
Sbjct: 66  DVPVAEVMK--TDVLTVTPDTPLREAAEIM 93

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 122

>gnl|CDD|240000 cd04629, CBS_pair_16, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 44.5 bits (106), Expect = 1e-06
 Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 7/88 (7%)

Query: 75  TTDDTVYDAVKSMTQHNV-GALVVVKPGEQKSVAGIITERDYLRKIIVQG-RSSKSTKVG 132
           T D +V +AV+ + +  + G  VV    +  ++ G ++E+D L++++           V 
Sbjct: 7   TPDMSVTEAVEKLLKSKISGGPVV---DDNGNLVGFLSEQDCLKQLLESSYHCDGVATVR 63

Query: 133 DIMTEENKLITVSPDTKVLRAMQLMTGH 160
           DIMT E  ++TVSPD  ++   QLM   
Sbjct: 64  DIMTTE--VLTVSPDDSIVDLAQLMLKA 89

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 114

>gnl|CDD|240005 cd04634, CBS_pair_21, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 43.9 bits (104), Expect = 3e-06
 Identities = 30/118 (25%), Positives = 50/118 (42%), Gaps = 36/118 (30%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRS-------- 125
           C  DDT+ DA + + ++ +    V+  G+   + GI++E D L+ ++    S        
Sbjct: 6   CNADDTISDAARLLRENKISGAPVLDGGK---LVGIVSESDILKLLVTHDPSGNLWLPSP 62

Query: 126 -----------------------SKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTGH 160
                                  +   KV DIMT+  K+IT+SPD  +  A +LM  H
Sbjct: 63  LELIELPLREFINWEETKRALTDAGKMKVRDIMTK--KVITISPDASIEDAAELMVRH 118

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 143

>gnl|CDD|239985 cd04612, CBS_pair_SpoIVFB_EriC_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

 Score = 43.0 bits (102), Expect = 5e-06
 Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 7/84 (8%)

Query: 77  DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMT 136
           D TV + +  M         VV  G    + GI+T    +R++  +GR +    VGD+MT
Sbjct: 9   DLTVDEVLALMFGERHRGYPVVDDGR---LVGIVT-LADIRRVPAEGREAT-VLVGDVMT 63

Query: 137 EENKLITVSPDTKVLRAMQLMTGH 160
                +T SPD  +  A++ M   
Sbjct: 64  --RDPVTASPDETLRDALKRMAER 85

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|225979 COG3448, COG3448, CBS-domain-containing membrane protein [Signal transduction mechanisms]

 Score = 44.8 bits (106), Expect = 6e-06
 Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 10/95 (10%)

Query: 76  TDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI----IVQGRSSKSTKV 131
           TD ++  A K + +H + AL V+   E + + GI+T+RD L+        + R  +   V
Sbjct: 260 TDTSIDHARKLLQEHRIKALPVLD--EHRRLVGIVTQRDLLKHARPSPFQRLRFLRPPTV 317

Query: 132 GDIMTEENKLITVSPDTKVLRAMQLMT--GHMLLP 164
             IMT    ++TV PDT  +  +  +   G   LP
Sbjct: 318 KGIMT--TPVVTVRPDTPAVELVPRLADEGLHALP 350

Length = 382

>gnl|CDD|226147 COG3620, COG3620, Predicted transcriptional regulator with C-terminal CBS domains [Transcription]

 Score = 44.0 bits (104), Expect = 6e-06
 Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 5/87 (5%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGD 133
            + DD++ D V  M    +  L V+   E+  V G ITE D +R ++    S +S +V +
Sbjct: 78  VSPDDSISDVVNLMRDKGISQLPVI---EEDKVVGSITENDIVRALLEGMESIRSLRVRE 134

Query: 134 IMTEENKLITVSPDTKVLRAMQLMTGH 160
           +M E     TVSPD  +    QL+  H
Sbjct: 135 VMGE--PFPTVSPDESLNVISQLLEEH 159

Length = 187

>gnl|CDD|239957 cd04584, CBS_pair_ACT_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

 Score = 42.6 bits (101), Expect = 8e-06
 Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 3/44 (6%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117
               DTV +A   M +H +G L VV+ G    + GIITE D LR
Sbjct: 80  VHPLDTVEEAALLMREHRIGCLPVVEDGR---LVGIITETDLLR 120

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 121

>gnl|CDD|239992 cd04620, CBS_pair_7, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 42.3 bits (100), Expect = 8e-06
 Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 3/86 (3%)

Query: 75  TTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDI 134
           T D  V DA+  M+Q    + V+V   E+  + GI TERD +R +   G+      +G++
Sbjct: 7   TPDTPVADAIALMSQQGDSSCVLVV--EKGRLLGIFTERDIVR-LTAIGKDLSDLPIGEV 63

Query: 135 MTEENKLITVSPDTKVLRAMQLMTGH 160
           MT+    +  S    +  A+ L   H
Sbjct: 64  MTQPVVTLQESEIQDIFTALSLFRQH 89

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 115

>gnl|CDD|201313 pfam00571, CBS, CBS domain

 Score = 41.0 bits (97), Expect = 9e-06
 Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 2/49 (4%)

Query: 72  LWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII 120
           +    D ++ +A++ M ++ +  L VV   E   + GI+T RD LR ++
Sbjct: 10  VTVPPDTSLEEALELMRENGISRLPVV--DEDGKLVGIVTLRDLLRALL 56

CBS domains are small intracellular modules that pair together to form a stable globular domain. This family represents a single CBS domain. Pairs of these domains have been termed a Bateman domain. CBS domains have been shown to bind ligands with an adenosyl group such as AMP, ATP and S-AdoMet. CBS domains are found attached to a wide range of other protein domains suggesting that CBS domains may play a regulatory role making proteins sensitive to adenosyl carrying ligands. The region containing the CBS domains in Cystathionine-beta synthase is involved in regulation by S-AdoMet. CBS domain pairs from AMPK bind AMP or ATP. The CBS domains from IMPDH and the chloride channel CLC2 bind ATP. Length = 57

>gnl|CDD|233350 TIGR01302, IMP_dehydrog, inosine-5'-monophosphate dehydrogenase

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 8/85 (9%)

Query: 77  DDTVYDAVKSMTQHNVGALVVVKPGEQKS-VAGIITERDYLRKIIVQGRSSKSTKVGDIM 135
           + TV D ++ M +  +  + VV+ G+    + GIIT+RD      ++    K   V ++M
Sbjct: 96  ETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRD------IRFVKDKGKPVSEVM 149

Query: 136 TEENKLITVSPDTKVLRAMQLMTGH 160
           T E  +ITV     +  A++++  H
Sbjct: 150 TREE-VITVPEGIDLEEALKVLHEH 173

This model describes IMP dehydrogenase, an enzyme of GMP biosynthesis. This form contains two CBS domains. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models [Purines, pyrimidines, nucleosides, and nucleotides, Purine ribonucleotide biosynthesis]. Length = 450

>gnl|CDD|239961 cd04588, CBS_pair_CAP-ED_DUF294_assoc_arch, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

 Score = 40.8 bits (96), Expect = 3e-05
 Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 10/87 (11%)

Query: 75  TTDDTVYDAVKSMTQHNV-GALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGD 133
             + T+ +A +    H++ GA VV    +   + GI+T  D    I    R  +  KV D
Sbjct: 7   NPNATLREAARLFNTHHIHGAPVV----DDGKLVGIVTLSDIAHAI---ARGLELAKVKD 59

Query: 134 IMTEENKLITVSPDTKVLRAMQLMTGH 160
           +MT++  +IT+  D ++  A++LM  H
Sbjct: 60  VMTKD--VITIDEDEQLYDAIRLMNKH 84

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

>gnl|CDD|214522 smart00116, CBS, Domain in cystathionine beta-synthase and other proteins

 Score = 38.6 bits (91), Expect = 5e-05
 Identities = 12/47 (25%), Positives = 27/47 (57%), Gaps = 2/47 (4%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII 120
            + D T+ +A++ + ++ +  L VV   E+  + GI+T RD ++ + 
Sbjct: 5   VSPDTTLEEALELLRENGIRRLPVVD--EEGRLVGIVTRRDIIKALA 49

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease. Length = 49

>gnl|CDD|239994 cd04622, CBS_pair_9, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 39.4 bits (93), Expect = 1e-04
 Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 9/72 (12%)

Query: 47  EEHGFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSV 106
           E    ++TT+ D++           +  T DD V +A + M +H V  L VV   +   +
Sbjct: 51  EGRDPDTTTVGDVMT-------RGVVTVTEDDDVDEAARLMREHQVRRLPVV--DDDGRL 101

Query: 107 AGIITERDYLRK 118
            GI++  D  R 
Sbjct: 102 VGIVSLGDLARA 113

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|240003 cd04632, CBS_pair_19, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 38.6 bits (90), Expect = 3e-04
 Identities = 17/41 (41%), Positives = 28/41 (68%)

Query: 77  DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117
           +D+V DAV  M +++  ++VVV P +   V GI+T++D LR
Sbjct: 87  NDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLR 127

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 128

>gnl|CDD|239986 cd04613, CBS_pair_SpoIVFB_EriC_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

 Score = 38.3 bits (90), Expect = 3e-04
 Identities = 15/82 (18%), Positives = 31/82 (37%), Gaps = 5/82 (6%)

Query: 77  DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMT 136
           D  + + +  +         VV   +   + GI++  D +R+I+            DIMT
Sbjct: 9   DTPLNELLDVIAHSPENNFPVV--DDDGRLVGIVSLDD-IREILFDPSLYDLVVASDIMT 65

Query: 137 EENKLITVSPDTKVLRAMQLMT 158
                + V P+  +  A++   
Sbjct: 66  --KPPVVVYPEDSLEDALKKFE 85

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 114

>gnl|CDD|240007 cd04636, CBS_pair_23, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 38.5 bits (90), Expect = 3e-04
 Identities = 27/106 (25%), Positives = 45/106 (42%), Gaps = 23/106 (21%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI-------------- 119
              DDT+ D V+ +    +  + VV    +  V GI++E D +RKI              
Sbjct: 6   VKKDDTLRDVVEILLTGKISGVPVVD--NEGRVVGIVSEGDLIRKIYKGKGLFYVTLLYS 63

Query: 120 -----IVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTGH 160
                  + +     KV +IMT+  K+ITV  DT +    ++M+  
Sbjct: 64  VIFLDESKIKKLLGKKVEEIMTK--KVITVDEDTTIEDVARIMSKK 107

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 132

>gnl|CDD|237843 PRK14869, PRK14869, putative manganese-dependent inorganic pyrophosphatase; Provisional

 Score = 39.8 bits (94), Expect = 3e-04
 Identities = 14/79 (17%), Positives = 28/79 (35%), Gaps = 9/79 (11%)

Query: 54  TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITER 113
             + D+   K             D ++ +A   M ++NV  L VV    +  + G+++  
Sbjct: 68  PQVRDLEIDKPVTVS-------PDTSLKEAWNLMDENNVKTLPVVDEEGK--LLGLVSLS 118

Query: 114 DYLRKIIVQGRSSKSTKVG 132
           D  R  +        +K  
Sbjct: 119 DLARAYMDILDPEILSKSP 137

Length = 546

>gnl|CDD|240113 cd04800, CBS_pair_CAP-ED_DUF294_PBI_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

 Score = 37.9 bits (89), Expect = 4e-04
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 3/41 (7%)

Query: 77  DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117
           D TV++A+  M +  +  L VV  G    + G+I+  D LR
Sbjct: 73  DATVFEALLLMLERGIHHLPVVDDGR---LVGVISATDLLR 110

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|239067 cd02205, CBS_pair, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 37.4 bits (87), Expect = 5e-04
 Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 2/44 (4%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117
            + D ++ +A + M +H +  L VV   ++  + GI+T  D LR
Sbjct: 71  VSPDTSLEEAAELMLEHGIRRLPVVD--DEGRLVGIVTRSDILR 112

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|239961 cd04588, CBS_pair_CAP-ED_DUF294_assoc_arch, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

 Score = 36.9 bits (86), Expect = 9e-04
 Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 9/70 (12%)

Query: 48  EHGFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVA 107
             G E   + D++       D        D+ +YDA++ M +HNVG L+V    E + V 
Sbjct: 49  ARGLELAKVKDVMTKDVITIDE-------DEQLYDAIRLMNKHNVGRLIVTD-DEGRPV- 99

Query: 108 GIITERDYLR 117
           GIIT  D LR
Sbjct: 100 GIITRTDILR 109

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

>gnl|CDD|239993 cd04621, CBS_pair_8, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 36.6 bits (85), Expect = 0.001
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 3/41 (7%)

Query: 77  DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117
           +D V DA K M + N+  L VV   +  ++ G+IT+ D  R
Sbjct: 97  NDDVVDAAKLMLEANISGLPVV---DNDNIVGVITKTDICR 134

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 135

>gnl|CDD|239957 cd04584, CBS_pair_ACT_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

 Score = 36.4 bits (85), Expect = 0.001
 Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 12/91 (13%)

Query: 75  TTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR--------KIIVQGRSS 126
           T   T+ +A++ M +H +  L VV   E+  + GI+T+RD               +    
Sbjct: 7   TPTTTIAEALELMREHKIRHLPVVD--EEGRLVGIVTDRDLRDASPSPFTTLSEHELYLL 64

Query: 127 KSTKVGDIMTEENKLITVSPDTKVLRAMQLM 157
               V +IMT++  +ITV P   V  A  LM
Sbjct: 65  LKMPVKEIMTKD--VITVHPLDTVEEAALLM 93

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 121

>gnl|CDD|240009 cd04638, CBS_pair_25, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 36.2 bits (84), Expect = 0.001
 Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 11/82 (13%)

Query: 79  TVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEE 138
           T  D ++ + ++ V  + VVK   +  + GIIT +D LR         +  ++  +MT +
Sbjct: 11  TRDDVLELLKEYKVSGVPVVKKSGE--LVGIITRKDLLRNP-------EEEQLALLMTRD 61

Query: 139 NKLITVSPDTKVLRAMQLMTGH 160
               TVSPD  V  A +LM  +
Sbjct: 62  --PPTVSPDDDVKEAAKLMVEN 81

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 106

>gnl|CDD|240006 cd04635, CBS_pair_22, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 36.7 bits (85), Expect = 0.001
 Identities = 28/95 (29%), Positives = 43/95 (45%), Gaps = 12/95 (12%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIV--------QGRS 125
           CT DD V      M +     L VV+  +   + GIIT RD +R   V        + ++
Sbjct: 6   CTPDDPVSKVWDLMLESGFTGLPVVQ--KAGELIGIITRRDIIRAGSVRTSVEDQQRTQT 63

Query: 126 SKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTGH 160
             S  V  IM+    + +V+PD  +  A++LM  H
Sbjct: 64  KASPTVEKIMS--TPVYSVTPDDSIATAVELMLEH 96

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 122

>gnl|CDD|180842 PRK07107, PRK07107, inosine 5-monophosphate dehydrogenase; Validated

 Score = 37.8 bits (88), Expect = 0.001
 Identities = 49/155 (31%), Positives = 67/155 (43%), Gaps = 31/155 (20%)

Query: 32  PVVSSRFESVSSARM-----EEHG----FESTTISD----ILKAKGKGA----DGSWLWC 74
           P+VS+  +SVS   M      E G    F S +I      + + K   A      S L  
Sbjct: 53  PLVSAIMQSVSDDNMAIALAREGGLSFIFGSQSIESEAAMVRRVKNYKAGFVVSDSNL-- 110

Query: 75  TTDDTVYDAV--KSMTQHNVGALVVVKPGEQKS-VAGIITERDYLRKIIVQGRSSKSTKV 131
           T D+T+ D +  K  T H+  A  V + G     + GI+T RDY        R S  TKV
Sbjct: 111 TPDNTLADVLDLKEKTGHSTVA--VTEDGTAHGKLLGIVTSRDYR-----ISRMSLDTKV 163

Query: 132 GDIMTEENKLITVSPDTKVLRAMQLMTGHML--LP 164
            D MT   KL+T +  T +  A  ++  H L  LP
Sbjct: 164 KDFMTPFEKLVTANEGTTLKEANDIIWDHKLNTLP 198

Length = 502

>gnl|CDD|239985 cd04612, CBS_pair_SpoIVFB_EriC_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

 Score = 36.0 bits (84), Expect = 0.002
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 2/41 (4%)

Query: 77  DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117
           D+T+ DA+K M + ++G L VV       + GI++  D LR
Sbjct: 72  DETLRDALKRMAERDIGRLPVVDDS--GRLVGIVSRSDLLR 110

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|225321 COG2524, COG2524, Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

 Score = 37.3 bits (87), Expect = 0.002
 Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 10/83 (12%)

Query: 76  TDDTVYDAVKSMTQHNV-GALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDI 134
            DDT+ +A K   +  + GA VV    +   + GIIT  D + K I  G      KV D 
Sbjct: 187 PDDTLREAAKLFYEKGIRGAPVV----DDDKIVGIITLSD-IAKAIANGN--LDAKVSDY 239

Query: 135 MTEENKLITVSPDTKVLRAMQLM 157
           M +   +IT++ D  +  A++LM
Sbjct: 240 MRKN--VITINEDEDIYDAIRLM 260

Length = 294

>gnl|CDD|225321 COG2524, COG2524, Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

 Score = 36.6 bits (85), Expect = 0.003
 Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 2/45 (4%)

Query: 77  DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIV 121
           D+ +YDA++ M ++NVG L+V      K V GIIT  D L +I  
Sbjct: 250 DEDIYDAIRLMNKNNVGRLLVTD-SNGKPV-GIITRTDILTRIAG 292

Length = 294

>gnl|CDD|239956 cd04583, CBS_pair_ABC_OpuCA_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

 Score = 35.2 bits (82), Expect = 0.003
 Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 10/86 (11%)

Query: 73  WCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVG 132
             T D T+ +A+K M    V +L+VV    +  + GI++    L +   + +S     + 
Sbjct: 6   TITPDRTLAEAIKLMRDKKVDSLLVVDKDNK--LLGIVSLES-LEQAYKEAKS-----LE 57

Query: 133 DIMTEENKLITVSPDTKVLRAMQLMT 158
           DIM E+  + TV PD  +   + L+ 
Sbjct: 58  DIMLED--VFTVQPDASLRDVLGLVL 81

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 109

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	164
COG3620	187	Predicted transcriptional regulator with C-termina	99.54
COG2524	294	Predicted transcriptional regulator, contains C-te	99.52
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	99.44
COG4109	432	Predicted transcriptional regulator containing CBS	99.43
cd04630	114	CBS_pair_17 The CBS domain, named after human CBS,	99.38
PRK10892	326	D-arabinose 5-phosphate isomerase; Provisional	99.37
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	99.34
TIGR03520	408	GldE gliding motility-associated protein GldE. Mem	99.34
cd04619	114	CBS_pair_6 The CBS domain, named after human CBS,	99.33
PF00571	57	CBS: CBS domain CBS domain web page. Mutations in	99.32
cd04623	113	CBS_pair_10 The CBS domain, named after human CBS,	99.31
cd04643	116	CBS_pair_30 The CBS domain, named after human CBS,	99.29
PRK11543	321	gutQ D-arabinose 5-phosphate isomerase; Provisiona	99.28
PRK11573	413	hypothetical protein; Provisional	99.27
PRK15094	292	magnesium/cobalt efflux protein CorC; Provisional	99.27
cd04592	133	CBS_pair_EriC_assoc_euk This cd contains two tande	99.27
TIGR00400	449	mgtE Mg2+ transporter (mgtE). This family of proka	99.26
cd04608	124	CBS_pair_PALP_assoc This cd contains two tandem re	99.26
cd04617	118	CBS_pair_4 The CBS domain, named after human CBS,	99.26
COG3448	382	CBS-domain-containing membrane protein [Signal tra	99.25
TIGR00393	268	kpsF KpsF/GutQ family protein. This model describe	99.25
cd04593	115	CBS_pair_EriC_assoc_bac_arch This cd contains two	99.25
cd04613	114	CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two	99.24
cd04600	124	CBS_pair_HPP_assoc This cd contains two tandem rep	99.24
cd04603	111	CBS_pair_KefB_assoc This cd contains two tandem re	99.24
cd04641	120	CBS_pair_28 The CBS domain, named after human CBS,	99.22
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	99.21
cd04605	110	CBS_pair_MET2_assoc This cd contains two tandem re	99.21
PRK01862	574	putative voltage-gated ClC-type chloride channel C	99.21
cd04632	128	CBS_pair_19 The CBS domain, named after human CBS,	99.21
cd04621	135	CBS_pair_8 The CBS domain, named after human CBS,	99.2
cd04587	113	CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains	99.2
cd04629	114	CBS_pair_16 The CBS domain, named after human CBS,	99.2
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	99.2
cd04801	114	CBS_pair_M50_like This cd contains two tandem repe	99.19
cd04639	111	CBS_pair_26 The CBS domain, named after human CBS,	99.19
cd04624	112	CBS_pair_11 The CBS domain, named after human CBS,	99.19
TIGR01137	454	cysta_beta cystathionine beta-synthase. Members of	99.19
cd04596	108	CBS_pair_DRTGG_assoc This cd contains two tandem r	99.19
cd04626	111	CBS_pair_13 The CBS domain, named after human CBS,	99.19
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	99.19
cd04622	113	CBS_pair_9 The CBS domain, named after human CBS,	99.18
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	99.18
cd04607	113	CBS_pair_NTP_transferase_assoc This cd contains tw	99.18
cd04803	122	CBS_pair_15 The CBS domain, named after human CBS,	99.18
COG2905	610	Predicted signal-transduction protein containing c	99.17
cd04615	113	CBS_pair_2 The CBS domain, named after human CBS,	99.17
cd04618	98	CBS_pair_5 The CBS domain, named after human CBS,	99.17
cd04802	112	CBS_pair_3 The CBS domain, named after human CBS,	99.17
cd04589	111	CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains	99.16
cd04800	111	CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains	99.16
cd04609	110	CBS_pair_PALP_assoc2 This cd contains two tandem r	99.15
cd04595	110	CBS_pair_DHH_polyA_Pol_assoc This cd contains two	99.14
cd04583	109	CBS_pair_ABC_OpuCA_assoc2 This cd contains two tan	99.14
cd04625	112	CBS_pair_12 The CBS domain, named after human CBS,	99.14
cd04586	135	CBS_pair_BON_assoc This cd contains two tandem rep	99.14
cd04582	106	CBS_pair_ABC_OpuCA_assoc This cd contains two tand	99.13
cd04604	114	CBS_pair_KpsF_GutQ_assoc This cd contains two tand	99.12
cd04611	111	CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two	99.12
cd04642	126	CBS_pair_29 The CBS domain, named after human CBS,	99.12
PLN02274	505	inosine-5'-monophosphate dehydrogenase	99.11
cd04588	110	CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains	99.11
cd04636	132	CBS_pair_23 The CBS domain, named after human CBS,	99.11
cd04631	125	CBS_pair_18 The CBS domain, named after human CBS,	99.11
cd04590	111	CBS_pair_CorC_HlyC_assoc This cd contains two tand	99.1
COG1253	429	TlyC Hemolysins and related proteins containing CB	99.1
cd04627	123	CBS_pair_14 The CBS domain, named after human CBS,	99.09
cd04635	122	CBS_pair_22 The CBS domain, named after human CBS,	99.09
cd04599	105	CBS_pair_GGDEF_assoc2 This cd contains two tandem	99.08
cd04633	121	CBS_pair_20 The CBS domain, named after human CBS,	99.07
cd04612	111	CBS_pair_SpoIVFB_EriC_assoc This cd contains two t	99.07
COG2239	451	MgtE Mg/Co/Ni transporter MgtE (contains CBS domai	99.07
cd04640	126	CBS_pair_27 The CBS domain, named after human CBS,	99.06
cd04585	122	CBS_pair_ACT_assoc2 This cd contains two tandem re	99.05
cd04610	107	CBS_pair_ParBc_assoc This cd contains two tandem r	99.03
cd04594	104	CBS_pair_EriC_assoc_archaea This cd contains two t	99.03
cd04638	106	CBS_pair_25 The CBS domain, named after human CBS,	99.02
cd04584	121	CBS_pair_ACT_assoc This cd contains two tandem rep	99.0
KOG2550	503	consensus IMP dehydrogenase/GMP reductase [Nucleot	99.0
cd04620	115	CBS_pair_7 The CBS domain, named after human CBS,	99.0
cd04634	143	CBS_pair_21 The CBS domain, named after human CBS,	98.99
cd04614	96	CBS_pair_1 The CBS domain, named after human CBS,	98.99
cd04606	109	CBS_pair_Mg_transporter This cd contains two tande	98.98
cd04637	122	CBS_pair_24 The CBS domain, named after human CBS,	98.98
cd04598	119	CBS_pair_GGDEF_assoc This cd contains two tandem r	98.97
cd04601	110	CBS_pair_IMPDH This cd contains two tandem repeats	98.97
cd02205	113	CBS_pair The CBS domain, named after human CBS, is	98.96
COG4536	423	CorB Putative Mg2+ and Co2+ transporter CorB [Inor	98.94
cd04602	114	CBS_pair_IMPDH_2 This cd contains two tandem repea	98.94
cd04591	105	CBS_pair_EriC_assoc_euk_bac This cd contains two t	98.88
COG0517	117	FOG: CBS domain [General function prediction only]	98.85
COG2524	294	Predicted transcriptional regulator, contains C-te	98.75
cd04603	111	CBS_pair_KefB_assoc This cd contains two tandem re	98.72
TIGR00400	449	mgtE Mg2+ transporter (mgtE). This family of proka	98.7
COG4535	293	CorC Putative Mg2+ and Co2+ transporter CorC [Inor	98.68
PRK14869	546	putative manganese-dependent inorganic pyrophospha	98.67
cd04619	114	CBS_pair_6 The CBS domain, named after human CBS,	98.66
cd04597	113	CBS_pair_DRTGG_assoc2 This cd contains two tandem	98.61
cd04607	113	CBS_pair_NTP_transferase_assoc This cd contains tw	98.51
cd04600	124	CBS_pair_HPP_assoc This cd contains two tandem rep	98.51
cd04615	113	CBS_pair_2 The CBS domain, named after human CBS,	98.5
PRK14869	546	putative manganese-dependent inorganic pyrophospha	98.5
cd04618	98	CBS_pair_5 The CBS domain, named after human CBS,	98.49
PRK15094	292	magnesium/cobalt efflux protein CorC; Provisional	98.48
cd04620	115	CBS_pair_7 The CBS domain, named after human CBS,	98.47
cd04604	114	CBS_pair_KpsF_GutQ_assoc This cd contains two tand	98.47
cd04596	108	CBS_pair_DRTGG_assoc This cd contains two tandem r	98.47
cd04610	107	CBS_pair_ParBc_assoc This cd contains two tandem r	98.46
cd04585	122	CBS_pair_ACT_assoc2 This cd contains two tandem re	98.46
cd04617	118	CBS_pair_4 The CBS domain, named after human CBS,	98.45
cd04630	114	CBS_pair_17 The CBS domain, named after human CBS,	98.44
cd04627	123	CBS_pair_14 The CBS domain, named after human CBS,	98.43
cd04625	112	CBS_pair_12 The CBS domain, named after human CBS,	98.43
cd04606	109	CBS_pair_Mg_transporter This cd contains two tande	98.43
cd04803	122	CBS_pair_15 The CBS domain, named after human CBS,	98.41
cd04582	106	CBS_pair_ABC_OpuCA_assoc This cd contains two tand	98.41
TIGR03520	408	GldE gliding motility-associated protein GldE. Mem	98.4
cd04635	122	CBS_pair_22 The CBS domain, named after human CBS,	98.4
cd04631	125	CBS_pair_18 The CBS domain, named after human CBS,	98.4
cd04611	111	CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two	98.4
cd04583	109	CBS_pair_ABC_OpuCA_assoc2 This cd contains two tan	98.39
cd04587	113	CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains	98.38
cd04639	111	CBS_pair_26 The CBS domain, named after human CBS,	98.38
cd04623	113	CBS_pair_10 The CBS domain, named after human CBS,	98.38
cd04595	110	CBS_pair_DHH_polyA_Pol_assoc This cd contains two	98.37
cd04621	135	CBS_pair_8 The CBS domain, named after human CBS,	98.37
cd04593	115	CBS_pair_EriC_assoc_bac_arch This cd contains two	98.37
cd04586	135	CBS_pair_BON_assoc This cd contains two tandem rep	98.36
cd04590	111	CBS_pair_CorC_HlyC_assoc This cd contains two tand	98.36
cd04801	114	CBS_pair_M50_like This cd contains two tandem repe	98.36
smart00116	49	CBS Domain in cystathionine beta-synthase and othe	98.34
cd04601	110	CBS_pair_IMPDH This cd contains two tandem repeats	98.34
cd04602	114	CBS_pair_IMPDH_2 This cd contains two tandem repea	98.34
cd04622	113	CBS_pair_9 The CBS domain, named after human CBS,	98.34
cd04588	110	CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains	98.34
cd04641	120	CBS_pair_28 The CBS domain, named after human CBS,	98.33
cd04800	111	CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains	98.33
cd04599	105	CBS_pair_GGDEF_assoc2 This cd contains two tandem	98.33
cd04613	114	CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two	98.32
cd04614	96	CBS_pair_1 The CBS domain, named after human CBS,	98.32
PRK11543	321	gutQ D-arabinose 5-phosphate isomerase; Provisiona	98.31
cd04626	111	CBS_pair_13 The CBS domain, named after human CBS,	98.31
cd04802	112	CBS_pair_3 The CBS domain, named after human CBS,	98.31
cd04633	121	CBS_pair_20 The CBS domain, named after human CBS,	98.31
cd04629	114	CBS_pair_16 The CBS domain, named after human CBS,	98.3
cd04612	111	CBS_pair_SpoIVFB_EriC_assoc This cd contains two t	98.3
cd04636	132	CBS_pair_23 The CBS domain, named after human CBS,	98.3
cd04624	112	CBS_pair_11 The CBS domain, named after human CBS,	98.3
cd04640	126	CBS_pair_27 The CBS domain, named after human CBS,	98.3
cd04632	128	CBS_pair_19 The CBS domain, named after human CBS,	98.29
cd04605	110	CBS_pair_MET2_assoc This cd contains two tandem re	98.29
cd04637	122	CBS_pair_24 The CBS domain, named after human CBS,	98.29
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	98.27
cd04589	111	CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains	98.27
cd04643	116	CBS_pair_30 The CBS domain, named after human CBS,	98.27
cd04642	126	CBS_pair_29 The CBS domain, named after human CBS,	98.26
cd04584	121	CBS_pair_ACT_assoc This cd contains two tandem rep	98.26
COG3448	382	CBS-domain-containing membrane protein [Signal tra	98.24
PRK10892	326	D-arabinose 5-phosphate isomerase; Provisional	98.24
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	98.21
cd04594	104	CBS_pair_EriC_assoc_archaea This cd contains two t	98.21
cd04608	124	CBS_pair_PALP_assoc This cd contains two tandem re	98.19
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	98.18
PLN02274	505	inosine-5'-monophosphate dehydrogenase	98.17
cd04591	105	CBS_pair_EriC_assoc_euk_bac This cd contains two t	98.11
COG0517	117	FOG: CBS domain [General function prediction only]	98.11
cd04598	119	CBS_pair_GGDEF_assoc This cd contains two tandem r	98.07
cd04634	143	CBS_pair_21 The CBS domain, named after human CBS,	98.06
KOG1764	381	consensus 5'-AMP-activated protein kinase, gamma s	98.05
cd02205	113	CBS_pair The CBS domain, named after human CBS, is	98.04
PRK01862	574	putative voltage-gated ClC-type chloride channel C	98.03
COG4109	432	Predicted transcriptional regulator containing CBS	98.02
cd04638	106	CBS_pair_25 The CBS domain, named after human CBS,	97.98
cd04609	110	CBS_pair_PALP_assoc2 This cd contains two tandem r	97.98
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	97.98
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	97.92
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	97.91
COG3620	187	Predicted transcriptional regulator with C-termina	97.89
COG2905	610	Predicted signal-transduction protein containing c	97.88
PRK11573	413	hypothetical protein; Provisional	97.88
TIGR00393	268	kpsF KpsF/GutQ family protein. This model describe	97.86
COG2239	451	MgtE Mg/Co/Ni transporter MgtE (contains CBS domai	97.64
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	97.62
COG1253	429	TlyC Hemolysins and related proteins containing CB	97.59
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	97.59
COG4536	423	CorB Putative Mg2+ and Co2+ transporter CorB [Inor	97.55
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	97.42
KOG1764	381	consensus 5'-AMP-activated protein kinase, gamma s	97.27
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	97.27
TIGR01137	454	cysta_beta cystathionine beta-synthase. Members of	97.23
KOG0474	762	consensus Cl- channel CLC-7 and related proteins (	97.01
COG4535	293	CorC Putative Mg2+ and Co2+ transporter CorC [Inor	96.43
KOG2550	503	consensus IMP dehydrogenase/GMP reductase [Nucleot	96.17
KOG0474	762	consensus Cl- channel CLC-7 and related proteins (	95.97
cd04592	133	CBS_pair_EriC_assoc_euk This cd contains two tande	95.87
KOG0475	696	consensus Cl- channel CLC-3 and related proteins (	95.76
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	95.59
PF00571	57	CBS: CBS domain CBS domain web page. Mutations in	95.28
KOG2118	498	consensus Predicted membrane protein, contains two	94.66
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	92.81
KOG0475	696	consensus Cl- channel CLC-3 and related proteins (	91.89
KOG0476	931	consensus Cl- channel CLC-2 and related proteins (	91.32
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	90.88
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	88.95
KOG0476	931	consensus Cl- channel CLC-2 and related proteins (	85.53
cd04597	113	CBS_pair_DRTGG_assoc2 This cd contains two tandem	82.92

>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]

Probab=99.54  E-value=4.3e-14  Score=98.44  Aligned_cols=143  Identities=24%  Similarity=0.330  Sum_probs=109.1

Q ss_pred             HhhcCCCChHHHHHHhCccccccccccccccccc--cchhhh----hcCcccccHHHHhhhcCCCCCCCceEecCCCcHH
Q 031190            8 FLSHGNIVKSAVLQRIRLVNPMLRPVVSSRFESV--SSARME----EHGFESTTISDILKAKGKGADGSWLWCTTDDTVY   81 (164)
Q Consensus         8 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~----~~~~~~~~v~dim~~~~~~~~~~~~~v~~~~tl~   81 (164)
                      .|..-.++..++|+..+.+.+-+...-....+..  +..++.    ...-..++++.+|..       +++.|.+++++.
T Consensus        13 ~Rk~LGitQ~dLA~~aGVSQ~~IArlE~G~vdPrlSt~k~Il~aL~e~e~~~ita~~iM~s-------pvv~v~pdDsi~   85 (187)
T COG3620          13 RRKELGITQKDLARRAGVSQPYIARLEAGKVDPRLSTVKRILEALEEAEKTRITAKTIMHS-------PVVSVSPDDSIS   85 (187)
T ss_pred             HHHHcCCCHHHHHHHcCccHHHHHHHhcCCCCccHHHHHHHHHHHHHhhcceEeHhhhccC-------CeeEECchhhHH
Confidence            3444579999999999986665443332222211  001111    111145789999998       799999999999


Q ss_pred             HHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCcccccccccccCCCeEEEcCCCCHHHHHHHHHhCC
Q 031190           82 DAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTGHM  161 (164)
Q Consensus        82 ~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~v~~vm~~~~~~~~v~~~~~l~e~~~~m~~~~  161 (164)
                      +++++|..+++|.+||+  + +++++|-||..++.+..+..........++++|..  .+++|++++++..+.+++..|.
T Consensus        86 ~vv~lM~~~g~SQlPVi--~-~~k~VGsItE~~iv~~~le~~e~i~~~~vr~vM~e--~fP~Vs~~~~l~vI~~LL~~~~  160 (187)
T COG3620          86 DVVNLMRDKGISQLPVI--E-EDKVVGSITENDIVRALLEGMESIRSLRVREVMGE--PFPTVSPDESLNVISQLLEEHP  160 (187)
T ss_pred             HHHHHHHHcCCccCcee--e-CCeeeeeecHHHHHHHHhccccchhhhhHHHHhcC--CCCcCCCCCCHHHHHHHHhhCC
Confidence            99999999999999999  4 49999999999998877654344556789999999  6999999999999999998875


Q ss_pred             C
Q 031190          162 L  162 (164)
Q Consensus       162 ~  162 (164)
                      .
T Consensus       161 A  161 (187)
T COG3620         161 A  161 (187)
T ss_pred             e
Confidence            3

>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

Probab=99.52  E-value=6.2e-14  Score=104.65  Aligned_cols=96  Identities=25%  Similarity=0.431  Sum_probs=85.7

Q ss_pred             ccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCccccc
Q 031190           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKV  131 (164)
Q Consensus        52 ~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~v  131 (164)
                      .+.+|+++|++       ++.++.+++|+.+|.++|.++++.+.||+  |+ ++++|++|..|+..++. ++  ..+.+|
T Consensus       170 Pk~~V~~~~s~-------~~i~v~~d~tl~eaak~f~~~~i~GaPVv--d~-dk~vGiit~~dI~~aia-~g--~~~~kV  236 (294)
T COG2524         170 PKEKVKNLMSK-------KLITVRPDDTLREAAKLFYEKGIRGAPVV--DD-DKIVGIITLSDIAKAIA-NG--NLDAKV  236 (294)
T ss_pred             CcchhhhhccC-------CceEecCCccHHHHHHHHHHcCccCCcee--cC-CceEEEEEHHHHHHHHH-cC--CccccH
Confidence            45789999998       69999999999999999999999999999  54 59999999999976654 43  257899


Q ss_pred             ccccccCCCeEEEcCCCCHHHHHHHHHhCCC
Q 031190          132 GDIMTEENKLITVSPDTKVLRAMQLMTGHML  162 (164)
Q Consensus       132 ~~vm~~~~~~~~v~~~~~l~e~~~~m~~~~~  162 (164)
                      +++|++  +++++.+|+.+.||+++|..+++
T Consensus       237 ~~~M~k--~vitI~eDe~i~dAir~M~~~nV  265 (294)
T COG2524         237 SDYMRK--NVITINEDEDIYDAIRLMNKNNV  265 (294)
T ss_pred             HHHhcc--CCceEcCchhHHHHHHHHHhcCc
Confidence            999999  59999999999999999998876

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=99.44  E-value=7.4e-13  Score=109.00  Aligned_cols=116  Identities=28%  Similarity=0.400  Sum_probs=97.5

Q ss_pred             ccccccccccccccchhhh----hcC-----------------cccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHH
Q 031190           29 MLRPVVSSRFESVSSARME----EHG-----------------FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSM   87 (164)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~----~~~-----------------~~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~   87 (164)
                      .-.|.+++.||++++..|+    +.+                 +...++.++|..       ++.++.+++++.+++++|
T Consensus        43 l~~Pi~sa~Mdtvt~~~MAiaLAr~GGiGvih~nl~~~~q~~~l~~VKv~~iMi~-------~pvtv~~d~tv~eA~~~m  115 (479)
T PRK07807         43 TTIPLVVANMTAVAGRRMAETVARRGGLVVLPQDIPIDVVAEVVAWVKSRDLVFD-------TPVTLSPDDTVGDALALL  115 (479)
T ss_pred             cccceeecCCcchhHHHHHHHHHHCCCceEeeCCCCHHHHHHHHhhccccccccc-------CCeEECCCCCHHHHHHHH
Confidence            3458999999999998887    233                 133566677776       699999999999999999


Q ss_pred             HHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCcccccccccccCCCeEEEcCCCCHHHHHHHHHhCCC
Q 031190           88 TQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTGHML  162 (164)
Q Consensus        88 ~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~v~~vm~~~~~~~~v~~~~~l~e~~~~m~~~~~  162 (164)
                      .+++++.+||+  |++++++|+||.+|+.. .      ....++.++|++  +++++++++++.+++++|.++++
T Consensus       116 ~~~~~s~l~VV--D~~gklvGIVT~rDL~~-~------~~~~~V~diMt~--~~itV~~d~sL~eAl~lM~~~~i  179 (479)
T PRK07807        116 PKRAHGAVVVV--DEEGRPVGVVTEADCAG-V------DRFTQVRDVMST--DLVTLPAGTDPREAFDLLEAARV  179 (479)
T ss_pred             HhcCCceEEEE--CCCCeEEEEEeHHHHhc-C------ccCCCHHHhccC--CceEECCCCcHHHHHHHHHhcCC
Confidence            99999999999  78899999999999832 1      123679999998  59999999999999999998876

>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]

Probab=99.43  E-value=4e-13  Score=104.31  Aligned_cols=116  Identities=27%  Similarity=0.364  Sum_probs=103.5

Q ss_pred             ccccccccccccchhhhhcCccc-------ccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCC
Q 031190           31 RPVVSSRFESVSSARMEEHGFES-------TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ  103 (164)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~-------~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~  103 (164)
                      .|.++++||+.+.+.|...++.+       .+|.|+|.+-.     +..++.+++++.+-.++..+.+++++||+  |+.
T Consensus       158 lPvlstsYDTFTVAtmIN~Al~n~lIKkdI~~Vedi~~P~~-----~~~yL~~~d~v~d~~~l~~kt~~sRfPVv--n~~  230 (432)
T COG4109         158 LPVLSTSYDTFTVATMINKALSNQLIKKDIITVEDIMTPLE-----DTSYLRETDTVEDWLDLVEKTGHSRFPVV--NRS  230 (432)
T ss_pred             CceEEecccceeHHHHHHHHHHHhhhhhheeeHHHhccccc-----cceeccccccHHHHHHHHHHcCCCcccee--ccc
Confidence            39999999999998888776532       68999999754     48999999999999999999999999999  899


Q ss_pred             CcEEEEEehHHHHHHHHHcCCCCcccccccccccCCCeEEEcCCCCHHHHHHHHHhCCC
Q 031190          104 KSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTGHML  162 (164)
Q Consensus       104 ~~~vGivt~~dil~~~~~~~~~~~~~~v~~vm~~~~~~~~v~~~~~l~e~~~~m~~~~~  162 (164)
                      .+++|+|+.+|++.       ..++.++..+|++  ++.+|.+.+++..+.+.|.+.++
T Consensus       231 ~kvvGvVt~rDv~~-------~~~~t~ieKVMtk--np~tv~~~tsVAsvaq~MiwE~i  280 (432)
T COG4109         231 MKVVGVVTMRDVLD-------KKPSTTIEKVMTK--NPITVRAKTSVASVAQMMIWEGI  280 (432)
T ss_pred             ceEEEEEEehhhhc-------CCCCccHHHHhcc--CCeeecccchHHHHHHHHHhccc
Confidence            99999999999965       2467899999999  59999999999999999998876

>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.38  E-value=1e-11  Score=82.90  Aligned_cols=89  Identities=34%  Similarity=0.483  Sum_probs=75.7

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEEEEecCCC-CcEEEEEehHHHHHHHHHcCCCCcccccccccccCCCeEEEcCCC
Q 031190           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ-KSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDT  148 (164)
Q Consensus        70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~-~~~vGivt~~dil~~~~~~~~~~~~~~v~~vm~~~~~~~~v~~~~  148 (164)
                      ++.++.+++++.++++.|.+++++.+||+  |++ ++++|+|+.+|+++.+..........++.++|.+  +++++++++
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~--~~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~   77 (114)
T cd04630           2 NVVTIDGLATVAEALQLMKEHGVSSLVVE--KRRESDAYGIVTMRDILKKVVAEGRDPDRVNVYEIMTK--PLISVSPDM   77 (114)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCCEEEEE--ECCCCcEEEEEehHHHHHHHHhCCCCCCccCHHHHhcC--CCeeECCCC
Confidence            48899999999999999999999999999  666 8999999999997765543322234678999987  589999999


Q ss_pred             CHHHHHHHHHhCCC
Q 031190          149 KVLRAMQLMTGHML  162 (164)
Q Consensus       149 ~l~e~~~~m~~~~~  162 (164)
                      ++.+++..|.+++.
T Consensus        78 ~l~~~~~~~~~~~~   91 (114)
T cd04630          78 DIKYCARLMERTNI   91 (114)
T ss_pred             CHHHHHHHHHHcCC
Confidence            99999999988765

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK10892 D-arabinose 5-phosphate isomerase; Provisional

Probab=99.37  E-value=9.1e-12  Score=98.28  Aligned_cols=101  Identities=24%  Similarity=0.386  Sum_probs=84.0

Q ss_pred             ccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCccccc
Q 031190           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKV  131 (164)
Q Consensus        52 ~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~v  131 (164)
                      ..++|+++|.+.+     ++.++++++++.+|++.|.+++...+||+  |++|+++|+||.+|+.+ +...+....+.++
T Consensus       200 ~~~~V~dim~~~~-----~~~~v~~~~sl~~a~~~~~~~~~~~~vVv--d~~g~lvGivt~~Dl~~-~~~~~~~~~~~~v  271 (326)
T PRK10892        200 LLLRVSDIMHTGD-----EIPHVSKTASLRDALLEITRKNLGMTVIC--DDNMKIEGIFTDGDLRR-VFDMGIDLRQASI  271 (326)
T ss_pred             ccCcHHHHhCCCC-----CCeEECCCCCHHHHHHHHHhcCCCeEEEE--cCCCcEEEEEecHHHHH-HHhcCCCcccCCH
Confidence            4568999998511     38999999999999999999888888889  78899999999999855 3333222335689


Q ss_pred             ccccccCCCeEEEcCCCCHHHHHHHHHhCCC
Q 031190          132 GDIMTEENKLITVSPDTKVLRAMQLMTGHML  162 (164)
Q Consensus       132 ~~vm~~~~~~~~v~~~~~l~e~~~~m~~~~~  162 (164)
                      .++|++  ++.++.+++++.++++.|.++++
T Consensus       272 ~~im~~--~~~~v~~~~~l~~a~~~m~~~~~  300 (326)
T PRK10892        272 ADVMTP--GGIRVRPGILAVDALNLMQSRHI  300 (326)
T ss_pred             HHhcCC--CCEEECCCCCHHHHHHHHHHCCC
Confidence            999998  58999999999999999998876

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=99.34  E-value=5.8e-12  Score=103.64  Aligned_cols=118  Identities=27%  Similarity=0.374  Sum_probs=96.3

Q ss_pred             ccccccccccccccccchhhhh----cC-c----------------ccccHHHHhhhcCCCCCCCceEecCCCcHHHHHH
Q 031190           27 NPMLRPVVSSRFESVSSARMEE----HG-F----------------ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVK   85 (164)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~----~~-~----------------~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~   85 (164)
                      .....|.+++.||++++..|+.    .+ +                ..+++.++|..       ++.++.+++++.++++
T Consensus        40 ~~l~~P~vsa~mdtvTe~~MAi~~A~~GGigvIh~n~~i~~qae~v~~VKv~eim~~-------~pvtv~p~~tI~eA~~  112 (475)
T TIGR01303        40 TGTTIPLVVANMTAVAGRRMAETVARRGGIVILPQDLPIPAVKQTVAFVKSRDLVLD-------TPITLAPHDTVSDAMA  112 (475)
T ss_pred             CccccceeeccchhhHHHHHHHHHHHCCCEEEEeCCCCHHHHHHHHhhcchhhcccc-------CCeEECCCCCHHHHHH
Confidence            3345699999999999999983    21 1                23455677766       6999999999999999


Q ss_pred             HHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCcccccccccccCCCeEEEcCCCCHHHHHHHHHhCCCC
Q 031190           86 SMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTGHMLL  163 (164)
Q Consensus        86 ~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~v~~vm~~~~~~~~v~~~~~l~e~~~~m~~~~~~  163 (164)
                      +|.+++++.+||+  | +++++|+||.+|+.. .      ....+++++|++  +++++++++++.+++++|.++++.
T Consensus       113 lm~~~~~~~~vVv--D-~gklvGIVT~rDL~~-~------~~~~~V~dIMt~--~litv~~~~sL~eAl~lM~~~~i~  178 (475)
T TIGR01303       113 LIHKRAHGAAVVI--L-EDRPVGLVTDSDLLG-V------DRFTQVRDIMST--DLVTAPADTEPRKAFDLLEHAPRD  178 (475)
T ss_pred             HHHhcCCeEEEEE--E-CCEEEEEEEHHHhhc-C------CCCCCHHHHccC--CceEeCCCCcHHHHHHHHHHcCCC
Confidence            9999999999999  5 478999999999832 1      134679999998  599999999999999999998763

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>TIGR03520 GldE gliding motility-associated protein GldE

Probab=99.34  E-value=4.6e-12  Score=102.82  Aligned_cols=107  Identities=10%  Similarity=0.178  Sum_probs=88.1

Q ss_pred             chhhhhc--CcccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHH
Q 031190           43 SARMEEH--GFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII  120 (164)
Q Consensus        43 ~~~~~~~--~~~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~  120 (164)
                      +..|...  .|.+.+|+|+|+++.+     +.+++.++++.++++.+.+++++++||++ ++.++++|+|+.+|++....
T Consensus       178 E~~~i~~vl~l~~~~v~diMtpr~~-----v~~l~~~~~~~e~~~~~~~~~~sR~PV~~-~~~d~ivGiv~~kDll~~~~  251 (408)
T TIGR03520       178 EQKILQGIVSFGNTDTKQVMRPRLD-----IFALDIETSFSEIIPKIIENGYSRIPVYK-ETIDNITGVLYIKDLLPHLN  251 (408)
T ss_pred             HHHHHHHHhccCCCEeeeeCCchHh-----EEEEECCCCHHHHHHHHHhCCCCEEEEEc-CCCCceEEEEEHHHHHhHhc
Confidence            3444433  4688999999998764     99999999999999999999999999994 33478999999999976331


Q ss_pred             HcCCCCcccccccccccCCCeEEEcCCCCHHHHHHHHHhCCCC
Q 031190          121 VQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTGHMLL  163 (164)
Q Consensus       121 ~~~~~~~~~~v~~vm~~~~~~~~v~~~~~l~e~~~~m~~~~~~  163 (164)
                        .   ...++.++|++   +.+|++++++.++++.|.+++.|
T Consensus       252 --~---~~~~l~~~~~~---~~~Vpe~~~l~~ll~~m~~~~~~  286 (408)
T TIGR03520       252 --K---KNFDWQSLLRE---PYFVPENKKLDDLLRDFQEKKNH  286 (408)
T ss_pred             --c---CCCCHHHHcCC---CeEeCCCCcHHHHHHHHHhcCce
Confidence              1   23457889987   89999999999999999988754

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.

>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.33  E-value=2.9e-11  Score=80.83  Aligned_cols=88  Identities=20%  Similarity=0.302  Sum_probs=75.3

Q ss_pred             ceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCcccccccccccCCCeEEEcCCCCH
Q 031190           71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKV  150 (164)
Q Consensus        71 ~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~v~~vm~~~~~~~~v~~~~~l  150 (164)
                      +.++.+++++.+|++.|.+++...+||+  |++|+++|+|+.+|+++............++.++|.+  ++.++.+++++
T Consensus         3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vv--d~~g~~~G~vt~~dl~~~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~l   78 (114)
T cd04619           3 LAKIDVNATLQRAAKILGEPGIDLVVVC--DPHGKLAGVLTKTDVVRQMGRCGGPGCTAPVENVMTR--AVVSCRPGDLL   78 (114)
T ss_pred             eEEECCCCcHHHHHHHHHhcCCCEEEEE--CCCCCEEEEEehHHHHHHHhhcCCCcccCCHHHHhcC--CCeeECCCCCH
Confidence            7889999999999999999999999999  7889999999999997654321222345689999988  58899999999


Q ss_pred             HHHHHHHHhCCC
Q 031190          151 LRAMQLMTGHML  162 (164)
Q Consensus       151 ~e~~~~m~~~~~  162 (164)
                      .++++.|.+++.
T Consensus        79 ~~a~~~m~~~~~   90 (114)
T cd04619          79 HDVWQVMKQRGL   90 (114)
T ss_pred             HHHHHHHHHcCC
Confidence            999999998876

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>PF00571 CBS: CBS domain CBS domain web page

Probab=99.32  E-value=1.3e-11  Score=72.72  Aligned_cols=56  Identities=27%  Similarity=0.510  Sum_probs=52.0

Q ss_pred             HHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHH
Q 031190           56 ISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII  120 (164)
Q Consensus        56 v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~  120 (164)
                      |+++|.+       ++.++++++++.++++.|.+++++++||+  |++|+++|+||.+|+++.+.
T Consensus         1 v~~~m~~-------~~~~v~~~~~l~~~~~~~~~~~~~~~~V~--d~~~~~~G~is~~dl~~~l~   56 (57)
T PF00571_consen    1 VGDIMTP-------PPITVSPDDSLEEALEIMRKNGISRLPVV--DEDGKLVGIISRSDLLKALL   56 (57)
T ss_dssp             HHHHSBS-------SSEEEETTSBHHHHHHHHHHHTSSEEEEE--STTSBEEEEEEHHHHHHHHH
T ss_pred             CeECCcC-------CCEEEcCcCcHHHHHHHHHHcCCcEEEEE--ecCCEEEEEEEHHHHHhhhh
Confidence            5789988       69999999999999999999999999999  88999999999999987653

Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....

>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.31  E-value=6.8e-11  Score=78.31  Aligned_cols=89  Identities=42%  Similarity=0.602  Sum_probs=74.9

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCcccccccccccCCCeEEEcCCCC
Q 031190           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTK  149 (164)
Q Consensus        70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~v~~vm~~~~~~~~v~~~~~  149 (164)
                      ++.++.++.++.++++.|.+.+++.+||+  |++++++|+++.+|+++.+..........++.++|..  ++.+++++++
T Consensus         2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~--~~~~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~   77 (113)
T cd04623           2 DVITVRPDATVAEAAKLMAEKNIGAVVVV--DDGGRLVGIFSERDIVRKVALRGASALDTPVSEIMTR--NVITVTPDDT   77 (113)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeEEEE--CCCCCEEEEEehHHHHHHHhhcCCCccccCHHHhcCC--CcEEECCCCc
Confidence            48889999999999999999999999999  7779999999999997755432222224578999977  5899999999


Q ss_pred             HHHHHHHHHhCCC
Q 031190          150 VLRAMQLMTGHML  162 (164)
Q Consensus       150 l~e~~~~m~~~~~  162 (164)
                      +.++++.|.+++.
T Consensus        78 ~~~~l~~~~~~~~   90 (113)
T cd04623          78 VDEAMALMTERRF   90 (113)
T ss_pred             HHHHHHHHHHcCC
Confidence            9999999988765

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.29  E-value=3.6e-11  Score=80.17  Aligned_cols=90  Identities=20%  Similarity=0.273  Sum_probs=74.5

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCc----ccccccccccCCCeEEEc
Q 031190           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSK----STKVGDIMTEENKLITVS  145 (164)
Q Consensus        70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~----~~~v~~vm~~~~~~~~v~  145 (164)
                      ++.++++++++.++++.|.+++++.+||+  |++++++|+|+.+|+++..........    ..++.++|.+  ++.+++
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~--d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~v~   77 (116)
T cd04643           2 EVAYVQDTNTLRHALLVLTKHGYSAIPVL--DKEGKYVGTISLTDILWKLKGLENLDLERLVDLKVIDVMNT--DVPVII   77 (116)
T ss_pred             CcEEECCCCcHHHHHHHHHHCCCceeeeE--CCCCcEEEEEeHHHHHHHhhccCchhHHHHhCCcHHHHhcC--CCceec
Confidence            48899999999999999999999999999  778999999999999765432111111    4678999998  589999


Q ss_pred             CCCCHHHHHHHHHhCCCC
Q 031190          146 PDTKVLRAMQLMTGHMLL  163 (164)
Q Consensus       146 ~~~~l~e~~~~m~~~~~~  163 (164)
                      +++++.++++.|.++++.
T Consensus        78 ~~~~l~~a~~~~~~~~~~   95 (116)
T cd04643          78 DDADIEEILHLLIDQPFL   95 (116)
T ss_pred             CCCCHHHHHHHHhcCCce
Confidence            999999999999887653

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional

Probab=99.28  E-value=4.6e-11  Score=94.01  Aligned_cols=97  Identities=19%  Similarity=0.342  Sum_probs=83.6

Q ss_pred             cccHHHHhhhcCCCCCCC--ceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCcccc
Q 031190           53 STTISDILKAKGKGADGS--WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTK  130 (164)
Q Consensus        53 ~~~v~dim~~~~~~~~~~--~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~  130 (164)
                      ..+|+++|.+       +  +.++++++++.+|++.|..++...+||+  |++|+++|+|+.+|+.+.+. .+. ....+
T Consensus       196 ~~~V~~im~~-------~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vv--d~~g~~iG~vt~~dl~~~~~-~~~-~~~~~  264 (321)
T PRK11543        196 LNKVHHLMRR-------DDAIPQVALTASVMDAMLELSRTGLGLVAVC--DAQQQVQGVFTDGDLRRWLV-GGG-ALTTP  264 (321)
T ss_pred             HhHHHHHhcc-------CCCCcEeCCCCCHHHHHHHHHHcCCCEEEEE--cCCCcEEEEecHHHHHHHHh-CCC-CcCCc
Confidence            5789999998       5  8999999999999999998888999999  78899999999999865443 221 23567


Q ss_pred             cccccccCCCeEEEcCCCCHHHHHHHHHhCCC
Q 031190          131 VGDIMTEENKLITVSPDTKVLRAMQLMTGHML  162 (164)
Q Consensus       131 v~~vm~~~~~~~~v~~~~~l~e~~~~m~~~~~  162 (164)
                      +.++|++  ++.++.+++++.++++.|.+++.
T Consensus       265 v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~  294 (321)
T PRK11543        265 VNEAMTR--GGTTLQAQSRAIDAKEILMKRKI  294 (321)
T ss_pred             HHHhcCC--CCEEECCCCCHHHHHHHHHHcCC
Confidence            9999998  58999999999999999998875

>PRK11573 hypothetical protein; Provisional

Probab=99.27  E-value=3.2e-11  Score=98.00  Aligned_cols=104  Identities=13%  Similarity=0.191  Sum_probs=85.9

Q ss_pred             CcccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCccc
Q 031190           50 GFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKST  129 (164)
Q Consensus        50 ~~~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~  129 (164)
                      .|.+.+|+++|+++++     +.+++.++++.++++.+.+++++++||++ ++.+.++|+|+.+|++.... .+......
T Consensus       183 ~l~~~~v~eiMtPr~~-----i~~l~~~~~~~e~~~~~~~~~~SR~PVy~-~~~D~IiGiv~~kDll~~~~-~~~~~~~~  255 (413)
T PRK11573        183 DLEKVTVDDIMVPRNE-----IVGIDINDDWKSILRQLTHSPHGRIVLYR-DSLDDAISMLRVREAYRLMT-EKKEFTKE  255 (413)
T ss_pred             ccCCCChhhcCCccce-----EEEEECCCCHHHHHHHHHhCCCceEEEEc-CCCCceEEEEEHHHHHHHhh-ccCcCCHH
Confidence            4688999999999885     99999999999999999999999999995 44588999999999986432 21111223


Q ss_pred             ccccccccCCCeEEEcCCCCHHHHHHHHHhCCCC
Q 031190          130 KVGDIMTEENKLITVSPDTKVLRAMQLMTGHMLL  163 (164)
Q Consensus       130 ~v~~vm~~~~~~~~v~~~~~l~e~~~~m~~~~~~  163 (164)
                      .+.+++++   +.+|++++++.++++.|.+++.|
T Consensus       256 ~l~~~~r~---~~~Vpe~~~l~~lL~~~~~~~~~  286 (413)
T PRK11573        256 NMLRAADE---IYFVPEGTPLSTQLVKFQRNKKK  286 (413)
T ss_pred             HHHhhccC---CeEeCCCCcHHHHHHHHHhcCCe
Confidence            45577777   89999999999999999988754

>PRK15094 magnesium/cobalt efflux protein CorC; Provisional

Probab=99.27  E-value=1.3e-11  Score=95.98  Aligned_cols=100  Identities=12%  Similarity=0.289  Sum_probs=84.1

Q ss_pred             CcccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCC-CcEEEEEehHHHHHHHHHcCCCCcc
Q 031190           50 GFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ-KSVAGIITERDYLRKIIVQGRSSKS  128 (164)
Q Consensus        50 ~~~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~-~~~vGivt~~dil~~~~~~~~~~~~  128 (164)
                      .|.+.+|+++|+++.+     +.+++.++++.++++.+..++++++||+  +++ ++++|+|+.+|++.... ..  ...
T Consensus        63 ~l~~~~V~diMtpr~~-----i~~l~~~~sl~e~~~~i~~~~~sr~PV~--~~~~d~iiGiv~~kDll~~~~-~~--~~~  132 (292)
T PRK15094         63 DIADQRVRDIMIPRSQ-----MITLKRNQTLDECLDVIIESAHSRFPVI--SEDKDHIEGILMAKDLLPFMR-SD--AEA  132 (292)
T ss_pred             ccCCCEEeEEccchHH-----EEEEeCCCCHHHHHHHHHhcCCcEEEEe--cCCCCcEEEEEEHHHHHhHhh-cc--CCc
Confidence            4688999999998653     8999999999999999999999999999  554 78999999999975432 11  123


Q ss_pred             cccccccccCCCeEEEcCCCCHHHHHHHHHhCCC
Q 031190          129 TKVGDIMTEENKLITVSPDTKVLRAMQLMTGHML  162 (164)
Q Consensus       129 ~~v~~vm~~~~~~~~v~~~~~l~e~~~~m~~~~~  162 (164)
                      ..+.++|++   +.+|++++++.++++.|.+++.
T Consensus       133 ~~l~~l~r~---~~~V~e~~~l~~~L~~m~~~~~  163 (292)
T PRK15094        133 FSMDKVLRQ---AVVVPESKRVDRMLKEFRSQRY  163 (292)
T ss_pred             CCHHHHcCC---CcCcCCCCcHHHHHHHHHhcCC
Confidence            458899987   6799999999999999998875

>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes

Probab=99.27  E-value=1.2e-10  Score=80.66  Aligned_cols=90  Identities=22%  Similarity=0.310  Sum_probs=71.7

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCC----------cccccccccc---
Q 031190           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSS----------KSTKVGDIMT---  136 (164)
Q Consensus        70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~----------~~~~v~~vm~---  136 (164)
                      ++.++.+++++.+|++.|..++++.+||+  |++|+++|+|+..|+++.+.......          ....+.++|.   
T Consensus         2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~Vv--D~~g~l~Givt~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~   79 (133)
T cd04592           2 KYIKVSPTTTLKEALNLMLDEKQSCVLVV--DSDDFLEGILTLGDIQRFLFTNKTTRVQPEDETKQTNTCLVSSVCTKGI   79 (133)
T ss_pred             CceEECCCCCHHHHHHHHHHcCCCEEEEE--CCCCeEEEEEEHHHHHHHHhhccccccccchhhcccccccHHHHhhhhh
Confidence            48999999999999999999999999999  78899999999999987654322110          0011344553   


Q ss_pred             ------cCCCeEEEcCCCCHHHHHHHHHhCCCC
Q 031190          137 ------EENKLITVSPDTKVLRAMQLMTGHMLL  163 (164)
Q Consensus       137 ------~~~~~~~v~~~~~l~e~~~~m~~~~~~  163 (164)
                            .  +++++.+++++.+|+++|.++++.
T Consensus        80 ~~~~~~~--~~~~v~~~~~l~ea~~~m~~~~~~  110 (133)
T cd04592          80 SYGGQEC--GLWTCTPDTDLTTAKKLMEAKGVK  110 (133)
T ss_pred             hhcccCC--CCEEECCCCCHHHHHHHHHHcCCC
Confidence                  4  588999999999999999998874

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually

>TIGR00400 mgtE Mg2+ transporter (mgtE)

Probab=99.26  E-value=4.3e-11  Score=98.29  Aligned_cols=95  Identities=16%  Similarity=0.258  Sum_probs=82.2

Q ss_pred             CcccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHH-----cCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCC
Q 031190           50 GFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQ-----HNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGR  124 (164)
Q Consensus        50 ~~~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~-----~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~  124 (164)
                      +|.+.+++++|++       ++.+++++.|+.++++.+++     +....+||+  |++++++|+|+.+|++..      
T Consensus       127 ~~~e~tvg~iMt~-------~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vv--d~~~~l~GvV~l~dLl~a------  191 (449)
T TIGR00400       127 SYSDDSAGRIMTI-------EYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVT--NESKHLKGVLSIRDLILA------  191 (449)
T ss_pred             CCCcchHHHhCcC-------ceEEECCCCcHHHHHHHHHhcCCCccceeEEEEE--CCCCeEEEEEEHHHHhcC------
Confidence            5788999999997       69999999999999999985     455788999  788999999999998641      


Q ss_pred             CCcccccccccccCCCeEEEcCCCCHHHHHHHHHhCCC
Q 031190          125 SSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTGHML  162 (164)
Q Consensus       125 ~~~~~~v~~vm~~~~~~~~v~~~~~l~e~~~~m~~~~~  162 (164)
                       ..+.+++++|++  +++++++++++.++++.|.++++
T Consensus       192 -~~~~~v~~im~~--~~~~v~~~~~~~eal~~m~~~~~  226 (449)
T TIGR00400       192 -KPEEILSSIMRS--SVFSIVGVNDQEEVARLIQKYDF  226 (449)
T ss_pred             -CCCCcHHHHhCC--CCeeECCCCCHHHHHHHHHHcCC
Confidence             235679999998  58899999999999999998875

This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.

>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=99.26  E-value=7.4e-11  Score=80.41  Aligned_cols=86  Identities=14%  Similarity=0.193  Sum_probs=74.1

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCcccccccccccCCCeEEEcCCCC
Q 031190           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTK  149 (164)
Q Consensus        70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~v~~vm~~~~~~~~v~~~~~  149 (164)
                      ++.++.+++++.++++.|.+++.+++||+  |++++++|+|+.+|+++.+.... ...+.+++++|++  ++.++.++++
T Consensus         3 ~~~~v~~~~~v~~a~~~m~~~~~~~~~Vv--d~~~~~~Gii~~~dl~~~~~~~~-~~~~~~v~~im~~--~~~~v~~~~~   77 (124)
T cd04608           3 APVTVLPTVTCAEAIEILKEKGFDQLPVV--DESGKILGMVTLGNLLSSLSSGK-VQPSDPVSKALYK--QFKRVNKNDT   77 (124)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCEEEEE--cCCCCEEEEEEHHHHHHHHHHhc-cCCCCcHHHHhhc--cceecCCCCC
Confidence            58999999999999999999999999999  77899999999999987654332 2356799999999  5999999999


Q ss_pred             HHHHHHHHHhC
Q 031190          150 VLRAMQLMTGH  160 (164)
Q Consensus       150 l~e~~~~m~~~  160 (164)
                      +.++.++|..+
T Consensus        78 ~~~v~~~~~~~   88 (124)
T cd04608          78 LGKLSRILETD   88 (124)
T ss_pred             HHHHHhhcccC
Confidence            99999976543

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten

>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.26  E-value=1.7e-10  Score=77.59  Aligned_cols=91  Identities=27%  Similarity=0.439  Sum_probs=75.2

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCcccccccccccCCCeEEEcCCCC
Q 031190           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTK  149 (164)
Q Consensus        70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~v~~vm~~~~~~~~v~~~~~  149 (164)
                      ++.++.+++++.+|++.|..++..++||+  |++++++|+|+..|+++..... ......++.++|.+...+.+++++++
T Consensus         2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~--d~~~~~~Givt~~dl~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~   78 (118)
T cd04617           2 PPVVVRENTSVYDAIVTLFLEDVGSLFVV--DEDGDLVGVVSRKDLLKASIGG-ADLQKVPVGVIMTRMPNITTTTPEES   78 (118)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCEEEEE--cCCCCEEEEEEHHHHHHHHHcC-CCccCCCHHHHhCCCCCcEEECCCCc
Confidence            47899999999999999999999999999  7779999999999997755422 22235678889974114889999999


Q ss_pred             HHHHHHHHHhCCCC
Q 031190          150 VLRAMQLMTGHMLL  163 (164)
Q Consensus       150 l~e~~~~m~~~~~~  163 (164)
                      +.+++++|.+++.+
T Consensus        79 l~~~~~~~~~~~~~   92 (118)
T cd04617          79 VLEAAKKLIEHQVD   92 (118)
T ss_pred             HHHHHHHHHHcCCC
Confidence            99999999998764

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]

Probab=99.25  E-value=2.9e-11  Score=92.23  Aligned_cols=102  Identities=28%  Similarity=0.410  Sum_probs=87.3

Q ss_pred             cccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcC----CCC
Q 031190           51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQG----RSS  126 (164)
Q Consensus        51 ~~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~----~~~  126 (164)
                      +.+.+..+||++       +++++++++++.+|.+++.++++..+||+  |++.+++|+|+.+|+++.+....    +..
T Consensus       242 ~~~LtcadIMSr-------dVvtv~~~ts~dhA~~ll~~H~ikaLPV~--d~~~rl~GiVt~~dl~~~a~~~p~qrlr~~  312 (382)
T COG3448         242 MGELTCADIMSR-------DVVTVSTDTSIDHARKLLQEHRIKALPVL--DEHRRLVGIVTQRDLLKHARPSPFQRLRFL  312 (382)
T ss_pred             hccccHHHhcCc-------cceecCCcCChHHHHHHHHHcCccccccc--ccccceeeeeeHHHHhhccCcchHHHhhcc
Confidence            467899999998       79999999999999999999999999999  88999999999999976321100    112


Q ss_pred             cccccccccccCCCeEEEcCCCCHHHHHHHHHhCCCC
Q 031190          127 KSTKVGDIMTEENKLITVSPDTKVLRAMQLMTGHMLL  163 (164)
Q Consensus       127 ~~~~v~~vm~~~~~~~~v~~~~~l~e~~~~m~~~~~~  163 (164)
                      ....++.+|++  ++.++.++++..+++..+++.+.|
T Consensus       313 ~~~~vk~imt~--~v~tv~pdtpa~~lvp~lad~g~H  347 (382)
T COG3448         313 RPPTVKGIMTT--PVVTVRPDTPAVELVPRLADEGLH  347 (382)
T ss_pred             CCCcccccccC--cceeecCCCcHHHHHHHhhcCCcc
Confidence            34578999998  599999999999999999988775

>TIGR00393 kpsF KpsF/GutQ family protein

Probab=99.25  E-value=7.7e-11  Score=90.43  Aligned_cols=96  Identities=22%  Similarity=0.402  Sum_probs=83.0

Q ss_pred             ccHHHHhhhcCCCCCCC-ceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCcccccc
Q 031190           54 TTISDILKAKGKGADGS-WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVG  132 (164)
Q Consensus        54 ~~v~dim~~~~~~~~~~-~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~v~  132 (164)
                      ++|+++|.+       + +.++.+++++.++++.|.+.+++++||+  |++|+++|+|+..|+++... .+ .....++.
T Consensus       155 ~~v~~im~~-------~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vv--d~~g~~~Givt~~dl~~~~~-~~-~~~~~~v~  223 (268)
T TIGR00393       155 VKVKDLMQT-------TDLPLIAPTTSFKDALLEMSEKRLGSAIVC--DENNQLVGVFTDGDLRRALL-GG-GSLKSEVR  223 (268)
T ss_pred             hhHHHHhCC-------CCCCcCCCCCcHHHHHHHHhhcCCcEEEEE--eCCCCEEEEEEcHHHHHHHh-cC-CcccCcHH
Confidence            688999987       5 8999999999999999999999999999  77899999999999976432 22 22457899


Q ss_pred             cccccCCCeEEEcCCCCHHHHHHHHHhCCC
Q 031190          133 DIMTEENKLITVSPDTKVLRAMQLMTGHML  162 (164)
Q Consensus       133 ~vm~~~~~~~~v~~~~~l~e~~~~m~~~~~  162 (164)
                      ++|.+  ++.++.+++++.+++++|.+++.
T Consensus       224 ~im~~--~~~~v~~~~~l~~a~~~m~~~~~  251 (268)
T TIGR00393       224 DFMTL--GPKTFKLDALLLEALEFLERRKI  251 (268)
T ss_pred             HhCCC--CCeEECCCCcHHHHHHHHHHcCC
Confidence            99988  58899999999999999999875

This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.

>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

Probab=99.25  E-value=1.9e-10  Score=76.74  Aligned_cols=88  Identities=25%  Similarity=0.366  Sum_probs=74.3

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCcccccccccccCCCeEEEcCCCC
Q 031190           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTK  149 (164)
Q Consensus        70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~v~~vm~~~~~~~~v~~~~~  149 (164)
                      ++.++.+++++.++++.|.+.+.+.+||+  |++|+++|+|+.+|+++... ........++.++|..  ++.++.++++
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~--d~~~~~~G~v~~~dl~~~~~-~~~~~~~~~~~~~~~~--~~~~v~~~~~   76 (115)
T cd04593           2 PPPVLSATTPLREAAEQLIESKHGSALVV--DRDGGVVGIITLPDLLRALE-ADEAGEPSAVDEVATP--PLLTVHPDEP   76 (115)
T ss_pred             CCcEeCCCCCHHHHHHHHHhCCCcEEEEE--cCCCCEEEEEEHHHHHHHHh-cccccccccHHHhccC--CceEECCCCC
Confidence            57889999999999999999999999999  77899999999999976443 2222234568899988  5999999999


Q ss_pred             HHHHHHHHHhCCC
Q 031190          150 VLRAMQLMTGHML  162 (164)
Q Consensus       150 l~e~~~~m~~~~~  162 (164)
                      +.+++++|.+++.
T Consensus        77 l~~~l~~~~~~~~   89 (115)
T cd04593          77 LAHALDRMASRGL   89 (115)
T ss_pred             HHHHHHHHHHcCC
Confidence            9999999998875

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d

>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=99.24  E-value=1.3e-10  Score=77.03  Aligned_cols=88  Identities=15%  Similarity=0.209  Sum_probs=74.3

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCcccccccccccCCCeEEEcCCCC
Q 031190           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTK  149 (164)
Q Consensus        70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~v~~vm~~~~~~~~v~~~~~  149 (164)
                      ++.++.+++++.++++.|...+++.+||+  |++|+++|+|+..|+++... +.......++.++|++  ++.+++++++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~G~v~~~~l~~~~~-~~~~~~~~~v~~~~~~--~~~~v~~~~~   76 (114)
T cd04613           2 DVVTIPEDTPLNELLDVIAHSPENNFPVV--DDDGRLVGIVSLDDIREILF-DPSLYDLVVASDIMTK--PPVVVYPEDS   76 (114)
T ss_pred             CceeeCCCCcHHHHHHHHHhCCCcceeEE--CCCCCEEEEEEHHHHHHHHh-cccccccEEHHHhccC--CCcEEcCCCC
Confidence            58899999999999999999999999999  77799999999999965432 3222223689999988  5899999999


Q ss_pred             HHHHHHHHHhCCC
Q 031190          150 VLRAMQLMTGHML  162 (164)
Q Consensus       150 l~e~~~~m~~~~~  162 (164)
                      +.++++.|.+.+.
T Consensus        77 ~~~~~~~~~~~~~   89 (114)
T cd04613          77 LEDALKKFEDSDY   89 (114)
T ss_pred             HHHHHHHHhhCCc
Confidence            9999999987764

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a

>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

Probab=99.24  E-value=1.7e-10  Score=77.89  Aligned_cols=90  Identities=32%  Similarity=0.481  Sum_probs=74.4

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCC---------CCcccccccccccCCC
Q 031190           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGR---------SSKSTKVGDIMTEENK  140 (164)
Q Consensus        70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~---------~~~~~~v~~vm~~~~~  140 (164)
                      ++.++.+++++.++.+.|.+.+++++||+  +++|+++|+|+.++++........         .....++.++|.+  +
T Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~--~~~~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~   78 (124)
T cd04600           3 DVVTVTPDTSLEEAWALLRRHRIKALPVV--DGDRRLVGIVTQRDLLRHARPDGRRPLRGRLRGRDKPETVGDIMSP--P   78 (124)
T ss_pred             CcEEeCCCCCHHHHHHHHHHcCCceeeEE--CCCCCEEEEEEHHHHHhhhcccccchhhhhhhcccccccHHHhccC--C
Confidence            68999999999999999999999999999  777999999999999764432110         0124478999988  5


Q ss_pred             eEEEcCCCCHHHHHHHHHhCCCC
Q 031190          141 LITVSPDTKVLRAMQLMTGHMLL  163 (164)
Q Consensus       141 ~~~v~~~~~l~e~~~~m~~~~~~  163 (164)
                      +.++++++++.++++.|.+++..
T Consensus        79 ~~~~~~~~~l~~~~~~~~~~~~~  101 (124)
T cd04600          79 VVTVRPDTPIAELVPLLADGGHH  101 (124)
T ss_pred             CeeeCCCCcHHHHHHHHHhcCCC
Confidence            99999999999999999887653

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism

Probab=99.24  E-value=1.7e-10  Score=76.84  Aligned_cols=86  Identities=22%  Similarity=0.262  Sum_probs=72.6

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCcccccccccccCCCeEEEcCCCC
Q 031190           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTK  149 (164)
Q Consensus        70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~v~~vm~~~~~~~~v~~~~~  149 (164)
                      ++.++.+++++.+|++.|..++.+.+||+  |++|+++|+|+..|+.+ ..  .....+.++.++|..  ++.++.++++
T Consensus         2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~V~--d~~~~~~G~v~~~dl~~-~~--~~~~~~~~v~~~~~~--~~~~v~~~~~   74 (111)
T cd04603           2 QTVSVNCENPLREAIKMINELGARAVVVV--DEENKVLGQVTLSDLLE-IG--PNDYETLKVCEVYIV--PVPIVYCDSK   74 (111)
T ss_pred             ceEEeCCCCcHHHHHHHHHHcCCCEEEEE--cCCCCEEEEEEHHHHHh-hc--cccccccChhheeec--CCcEECCCCc
Confidence            37889999999999999999999999999  77899999999999965 21  111224579999987  5889999999


Q ss_pred             HHHHHHHHHhCCC
Q 031190          150 VLRAMQLMTGHML  162 (164)
Q Consensus       150 l~e~~~~m~~~~~  162 (164)
                      +.++++.|.+++.
T Consensus        75 l~~al~~m~~~~~   87 (111)
T cd04603          75 VTDLLRIFRETEP   87 (111)
T ss_pred             HHHHHHHHHHcCC
Confidence            9999999998875

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.22  E-value=2.7e-10  Score=76.75  Aligned_cols=89  Identities=19%  Similarity=0.222  Sum_probs=69.1

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCccccccc------ccccCCCeEE
Q 031190           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGD------IMTEENKLIT  143 (164)
Q Consensus        70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~v~~------vm~~~~~~~~  143 (164)
                      ++.++++++++.+|++.|.+++++.+||+  |++|+++|+++.+|++..............+.+      +|..  ++.+
T Consensus         2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv--~~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~   77 (120)
T cd04641           2 NIATARPDTPLIDVLDMLVERRVSALPIV--DENGKVVDVYSRFDVINLAKEGAYNNLDLTVGEALERRSQDFE--GVRT   77 (120)
T ss_pred             CcEEEcCCCCHHHHHHHHHHcCCCeeeEE--CCCCeEEEEEeHHHHHHHHhcCccccccCCHHHHHhhcccCCC--CCeE
Confidence            58899999999999999999999999999  778999999999999754322111111122332      3334  4789


Q ss_pred             EcCCCCHHHHHHHHHhCCC
Q 031190          144 VSPDTKVLRAMQLMTGHML  162 (164)
Q Consensus       144 v~~~~~l~e~~~~m~~~~~  162 (164)
                      +++++++.++++.|.+++.
T Consensus        78 v~~~~~l~~~~~~m~~~~~   96 (120)
T cd04641          78 CSPDDCLRTIFDLIVKARV   96 (120)
T ss_pred             EcCCCcHHHHHHHHHhcCc
Confidence            9999999999999998875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=99.21  E-value=2e-10  Score=94.42  Aligned_cols=124  Identities=25%  Similarity=0.421  Sum_probs=93.3

Q ss_pred             cccccccccccccchhhh----hc---C-c-ccccHHH---HhhhcCCCCC---CCceEecCCCcHHHHHHHHHHcCCCe
Q 031190           30 LRPVVSSRFESVSSARME----EH---G-F-ESTTISD---ILKAKGKGAD---GSWLWCTTDDTVYDAVKSMTQHNVGA   94 (164)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~----~~---~-~-~~~~v~d---im~~~~~~~~---~~~~~v~~~~tl~~a~~~~~~~~~~~   94 (164)
                      ..|.++++|+++++..|+    ..   + + .++++.+   .+..-.++.+   .++.++++++++.++++.|.+++++.
T Consensus        34 ~~p~~s~~mdtvTe~ema~~ma~~gg~GvI~~n~~~e~q~~~V~~Vk~~~~~~~~~~vtl~~~~tv~eal~~m~~~~~s~  113 (450)
T TIGR01302        34 NIPILSSPMDTVTESRMAIAMAREGGIGVIHRNMSIEEQAEQVKRVKRAENGIISDPVTISPETTVADVLELMERKGISG  113 (450)
T ss_pred             CCCeeecCCCccCHHHHHHHHHhcCCCceeecCCCHHHHHHHHhhhccccCceecCceEeCCCCCHHHHHHHHHHcCCCE
Confidence            358999999999998886    11   2 1 2333321   1111112222   26899999999999999999999999


Q ss_pred             EEEEecCCC---CcEEEEEehHHHHHHHHHcCCCCcccccccccccCCCeEEEcCCCCHHHHHHHHHhCCC
Q 031190           95 LVVVKPGEQ---KSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTGHML  162 (164)
Q Consensus        95 ipVv~~d~~---~~~vGivt~~dil~~~~~~~~~~~~~~v~~vm~~~~~~~~v~~~~~l~e~~~~m~~~~~  162 (164)
                      +||+  |++   ++++|+|+.+|++..   .   ....++.++|++. +++++++++++.++++.|.+++.
T Consensus       114 lpVv--d~~~~~~~lvGIVt~rDL~~~---~---~~~~~V~dvm~~~-~~~~V~~~~sl~eal~~m~~~~~  175 (450)
T TIGR01302       114 IPVV--EDGDMTGKLVGIITKRDIRFV---K---DKGKPVSEVMTRE-EVITVPEGIDLEEALKVLHEHRI  175 (450)
T ss_pred             EEEE--eCCCCCCeEEEEEEHHHHhhh---h---cCCCCHHHhhCCC-CCEEECCCCcHHHHHHHHHHcCC
Confidence            9999  555   799999999999531   1   1356899999831 49999999999999999998875

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

Probab=99.21  E-value=2.9e-10  Score=75.10  Aligned_cols=84  Identities=30%  Similarity=0.432  Sum_probs=72.2

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCcccccccccccCCCeEEEcCCCC
Q 031190           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTK  149 (164)
Q Consensus        70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~v~~vm~~~~~~~~v~~~~~  149 (164)
                      ++.++.+++++.++++.|.+++++++||+  |++|+++|+++.+++++.+. .    ...++.++|.+  ++.+++++++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~--d~~~~~~G~v~~~~l~~~~~-~----~~~~~~~~~~~--~~~~v~~~~~   73 (110)
T cd04605           3 PVVTISEDASIKEAAKLMIEENINHLPVV--DEDGRLVGIVTSWDISKAVA-R----DKKSVEDIMTR--NVITATPDEP   73 (110)
T ss_pred             CCEEECCCCCHHHHHHHHHhCCCceEEEE--CCCCcEEEEEeHHHHHHHHh-h----CccCHHHhcCC--CCeEECCCCc
Confidence            58899999999999999999999999999  77899999999999976432 1    12358899977  5889999999


Q ss_pred             HHHHHHHHHhCCC
Q 031190          150 VLRAMQLMTGHML  162 (164)
Q Consensus       150 l~e~~~~m~~~~~  162 (164)
                      +.++++.|.+++.
T Consensus        74 l~~~~~~~~~~~~   86 (110)
T cd04605          74 IDVAARKMERHNI   86 (110)
T ss_pred             HHHHHHHHHHhCC
Confidence            9999999988764

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional

Probab=99.21  E-value=1.3e-10  Score=98.27  Aligned_cols=100  Identities=13%  Similarity=0.215  Sum_probs=85.6

Q ss_pred             cccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCcccc
Q 031190           51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTK  130 (164)
Q Consensus        51 ~~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~  130 (164)
                      +..++++|+|.+       ++.++++++++.++.+.+.+++.+.+||+  |++++++|+|+.+|+.+.+.... ...+.+
T Consensus       444 L~~~~V~dim~~-------~~~~v~~~~tl~ea~~~l~~~~~~~~~Vv--D~~g~lvGiVt~~dL~~~l~~~~-~~~~~~  513 (574)
T PRK01862        444 LRTTQMRELIQP-------AQTVVPPTASVADMTRVFLEYPVKYLYVV--DDDGRFRGAVALKDITSDLLDKR-DTTDKT  513 (574)
T ss_pred             HhhCcHHHHhcC-------CCceeCCCCCHHHHHHHHHhCCCceEEEE--cCCCeEEEEEEHHHHHHHhhccc-ccccch
Confidence            467899999987       58899999999999999999999999999  78899999999999966443222 223467


Q ss_pred             cccccccCCCeEEEcCCCCHHHHHHHHHhCCC
Q 031190          131 VGDIMTEENKLITVSPDTKVLRAMQLMTGHML  162 (164)
Q Consensus       131 v~~vm~~~~~~~~v~~~~~l~e~~~~m~~~~~  162 (164)
                      +.++|++  ++.++++++++.++++.|.+++.
T Consensus       514 v~dim~~--~~~~v~~d~~L~~al~~m~~~~~  543 (574)
T PRK01862        514 AADYAHT--PFPLLTPDMPLGDALEHFMAFQG  543 (574)
T ss_pred             HHHhccC--CCeeECCCCCHHHHHHHHHhcCC
Confidence            8999988  58899999999999999998876

>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.21  E-value=2.1e-10  Score=78.02  Aligned_cols=89  Identities=25%  Similarity=0.333  Sum_probs=73.6

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcC------------CCCccccccccccc
Q 031190           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQG------------RSSKSTKVGDIMTE  137 (164)
Q Consensus        70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~------------~~~~~~~v~~vm~~  137 (164)
                      ++.++.+++++.++++.|.+.+.+.+||+  |++|+++|+|+.+|+++.+....            ......++.++|..
T Consensus         2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv--~~~~~~~G~it~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (128)
T cd04632           2 DVITVREDDSVGKAINVLREHGISRLPVV--DDNGKLTGIVTRHDIVDFVVRDRDKARTGDRSGEKERMLDLPVYDAMSS   79 (128)
T ss_pred             CceEeCCCCCHHHHHHHHHHcCCCEEEEE--CCCCcEEEEEEHHHHHHHHhhhhhhcchhhhhhhhhhhccCcHHHHhcC
Confidence            47889999999999999999999999999  77899999999999976432110            00123578899987


Q ss_pred             CCCeEEEcCCCCHHHHHHHHHhCCC
Q 031190          138 ENKLITVSPDTKVLRAMQLMTGHML  162 (164)
Q Consensus       138 ~~~~~~v~~~~~l~e~~~~m~~~~~  162 (164)
                        +++++++++++.++++.|.+.+.
T Consensus        80 --~~~~v~~~~~l~~~l~~~~~~~~  102 (128)
T cd04632          80 --PVITASPNDSVRDAVDRMLENDD  102 (128)
T ss_pred             --CCceECCCCcHHHHHHHHHhCCC
Confidence              58999999999999999988765

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.20  E-value=2.7e-10  Score=78.75  Aligned_cols=89  Identities=28%  Similarity=0.395  Sum_probs=74.2

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCC----------------------c
Q 031190           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSS----------------------K  127 (164)
Q Consensus        70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~----------------------~  127 (164)
                      ++.++.+++++.+|++.|.+++.+.+||+  |++|+++|+|+..|+++.........                      .
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~--d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (135)
T cd04621           2 DIATVHPEHSLLHVVDEMEKNGVGRVIVV--DDNGKPVGVITYRDLAFAEFEDNERGLPKKSIKMKRKAGQKRYRYVKEV   79 (135)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCCCcceEE--CCCCCEEEEEeHHHHHHHhhcccccccchhhhhhhhhcccccccccccc
Confidence            47889999999999999999999999999  78899999999999977543211110                      1


Q ss_pred             ccccccccccCCCeEEEcCCCCHHHHHHHHHhCCC
Q 031190          128 STKVGDIMTEENKLITVSPDTKVLRAMQLMTGHML  162 (164)
Q Consensus       128 ~~~v~~vm~~~~~~~~v~~~~~l~e~~~~m~~~~~  162 (164)
                      ..++.++|.+  ++.++.+++++.++++.|.+++.
T Consensus        80 ~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~  112 (135)
T cd04621          80 PLVAEDIMTE--EIITVSPNDDVVDAAKLMLEANI  112 (135)
T ss_pred             cccHHHhcCC--CCeEECCCCCHHHHHHHHHHcCC
Confidence            4578999988  58899999999999999988765

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=99.20  E-value=4.4e-10  Score=74.51  Aligned_cols=88  Identities=28%  Similarity=0.398  Sum_probs=73.4

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCcccccccccccCCCeEEEcCCCC
Q 031190           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTK  149 (164)
Q Consensus        70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~v~~vm~~~~~~~~v~~~~~  149 (164)
                      ++.++.+++++.++++.|.+++.+.+||+  ++ ++++|+|+..|++..+...+......++.++|.+  ++.+++++++
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~--~~-~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~i~~~--~~~~v~~~~~   76 (113)
T cd04587           2 KPATVSPTTTVQEAAKLMREKRVSCVLVM--DG-NKLVGIFTSKDIALRVVAQGLDPESTLVERVMTP--NPVCATSDTP   76 (113)
T ss_pred             CCeEeCCCCCHHHHHHHHHHcCCCeEEEE--EC-CEEEEEEEhHHHHHHHHhcCCCcCcCCHHHhcCC--CCeEEcCCCC
Confidence            47889999999999999998889999999  65 9999999999997655433222222678999987  5889999999


Q ss_pred             HHHHHHHHHhCCC
Q 031190          150 VLRAMQLMTGHML  162 (164)
Q Consensus       150 l~e~~~~m~~~~~  162 (164)
                      +.++++.|.+++.
T Consensus        77 l~~~~~~~~~~~~   89 (113)
T cd04587          77 VLEALHLMVQGKF   89 (113)
T ss_pred             HHHHHHHHHHcCC
Confidence            9999999988765

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai

>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.20  E-value=2.6e-10  Score=75.75  Aligned_cols=89  Identities=27%  Similarity=0.407  Sum_probs=74.5

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcC-CCCcccccccccccCCCeEEEcCCC
Q 031190           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQG-RSSKSTKVGDIMTEENKLITVSPDT  148 (164)
Q Consensus        70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~-~~~~~~~v~~vm~~~~~~~~v~~~~  148 (164)
                      ++.++++++++.++++.|.+++++.+||+  |++++++|+|+..++++.+.... ......++.++|..  ++.++.+++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~--~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~   77 (114)
T cd04629           2 NPVTFTPDMSVTEAVEKLLKSKISGGPVV--DDNGNLVGFLSEQDCLKQLLESSYHCDGVATVRDIMTT--EVLTVSPDD   77 (114)
T ss_pred             CCeEeCCCCCHHHHHHHHHhcCCCCccEE--CCCCeEEEEeehHHHHHHhhhhhhccCCCccHHHHhcc--CceEECCCC
Confidence            58889999999999999998889999999  78899999999999976554321 11235678999988  588999999


Q ss_pred             CHHHHHHHHHhCCC
Q 031190          149 KVLRAMQLMTGHML  162 (164)
Q Consensus       149 ~l~e~~~~m~~~~~  162 (164)
                      ++.++++.|.+++.
T Consensus        78 ~l~~~~~~~~~~~~   91 (114)
T cd04629          78 SIVDLAQLMLKAKP   91 (114)
T ss_pred             cHHHHHHHHHHhCC
Confidence            99999999988764

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=99.20  E-value=8.4e-11  Score=97.44  Aligned_cols=120  Identities=30%  Similarity=0.343  Sum_probs=93.6

Q ss_pred             cccccccccccchhhh-----hcCcc----c----------ccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCC
Q 031190           32 PVVSSRFESVSSARME-----EHGFE----S----------TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNV   92 (164)
Q Consensus        32 ~~~~~~~~~~~~~~~~-----~~~~~----~----------~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~   92 (164)
                      |.+++.|++++...|+     ..+|.    +          ..|+++|...-.    +++++++++++.+|++.|.++++
T Consensus        53 P~~SatmdtvtgdalAiala~~gG~g~Ih~n~sie~qa~lV~kVk~~~~g~i~----~~~tV~pd~tl~eAl~~m~~~~~  128 (502)
T PRK07107         53 PLVSAIMQSVSDDNMAIALAREGGLSFIFGSQSIESEAAMVRRVKNYKAGFVV----SDSNLTPDNTLADVLDLKEKTGH  128 (502)
T ss_pred             ChHHHHHHHHhhHHHHHHHHHcCCCeEeeCCCCHHHHHHHHHHHHHHhcCCcC----CCCEeCCCCcHHHHHHHHHhcCC
Confidence            8888999998888777     22232    2          245566642101    46799999999999999999999


Q ss_pred             CeEEEEecCC---CCcEEEEEehHHHHHHHHHcCCCCcccccccccccCCCeEEEcCCCCHHHHHHHHHhCCC
Q 031190           93 GALVVVKPGE---QKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTGHML  162 (164)
Q Consensus        93 ~~ipVv~~d~---~~~~vGivt~~dil~~~~~~~~~~~~~~v~~vm~~~~~~~~v~~~~~l~e~~~~m~~~~~  162 (164)
                      +.+||+  |+   +++++|+||.+|+.. .  .  ...+.+++++|++.++++++++++++.+|+++|.++++
T Consensus       129 ~~vpVV--D~~~~~gkLvGIVT~~DLr~-~--~--~~~~~~V~dIMt~~~~~itv~~d~~l~eAl~lM~e~~i  194 (502)
T PRK07107        129 STVAVT--EDGTAHGKLLGIVTSRDYRI-S--R--MSLDTKVKDFMTPFEKLVTANEGTTLKEANDIIWDHKL  194 (502)
T ss_pred             CeEEEE--eCCCcCCEEEEEEEcHHhhc-c--c--cCCCCCHHHHhCCCCCeEEECCCCcHHHHHHHHHHcCC
Confidence            999999  54   589999999999842 1  1  23467899999964358899999999999999999876

>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50

Probab=99.19  E-value=3.7e-10  Score=75.22  Aligned_cols=88  Identities=22%  Similarity=0.228  Sum_probs=72.0

Q ss_pred             CceEecCCCcHHHHHHHHHHcC-CCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCcccccccccccCCCeEEEcCCC
Q 031190           70 SWLWCTTDDTVYDAVKSMTQHN-VGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDT  148 (164)
Q Consensus        70 ~~~~v~~~~tl~~a~~~~~~~~-~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~v~~vm~~~~~~~~v~~~~  148 (164)
                      ++.++++++++.+|++.|..++ .+.+||+  |++|+++|+|+.+|++.... .  .....++.++|....+++++.+++
T Consensus         2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~--d~~~~~~G~v~~~dl~~~~~-~--~~~~~~v~~~~~~~~~~~~v~~~~   76 (114)
T cd04801           2 DFPTVPAHLTLREFVREYVLGSNQRRFVVV--DNEGRYVGIISLADLRAIPT-S--QWAQTTVIQVMTPAAKLVTVLSEE   76 (114)
T ss_pred             CcceeCCCCCHHHHHHHHhccCCceeEEEE--cCCCcEEEEEEHHHHHHHHH-h--hccccchhhhhcccccceEECCCC
Confidence            5889999999999999987665 8899999  77899999999999976543 1  112467889997522367899999


Q ss_pred             CHHHHHHHHHhCCC
Q 031190          149 KVLRAMQLMTGHML  162 (164)
Q Consensus       149 ~l~e~~~~m~~~~~  162 (164)
                      ++.++++.|.+++.
T Consensus        77 ~l~~a~~~~~~~~~   90 (114)
T cd04801          77 SLAEVLKLLEEQGL   90 (114)
T ss_pred             cHHHHHHHHHHCCC
Confidence            99999999998875

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.19  E-value=3.1e-10  Score=75.10  Aligned_cols=86  Identities=21%  Similarity=0.288  Sum_probs=73.5

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCcccccccccccCCCeEEEcCCCC
Q 031190           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTK  149 (164)
Q Consensus        70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~v~~vm~~~~~~~~v~~~~~  149 (164)
                      ++.++.+++++.++++.|.+.+.+.+||+  +++|+++|+|+..++++.+...   ....++.++|..  ++.+++++++
T Consensus         2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~--~~~~~~~G~v~~~~l~~~~~~~---~~~~~v~~~~~~--~~~~i~~~~~   74 (111)
T cd04639           2 HFETLSPADTLDDAADALLATTQHEFPVV--DGDGHLVGLLTRDDLIRALAEG---GPDAPVRGVMRR--DFPTVSPSAT   74 (111)
T ss_pred             CceEcCCCCcHHHHHHHHHHcCCCcceEE--CCCCcEEEEeeHHHHHHHHHhc---CCCCcHHHHhcC--CCcEECCCCc
Confidence            48889999999999999998889999999  7779999999999997654322   134579999987  5899999999


Q ss_pred             HHHHHHHHHhCCC
Q 031190          150 VLRAMQLMTGHML  162 (164)
Q Consensus       150 l~e~~~~m~~~~~  162 (164)
                      +.++++.|.+++.
T Consensus        75 ~~~~~~~~~~~~~   87 (111)
T cd04639          75 LDAVLRLMQQGGA   87 (111)
T ss_pred             HHHHHHHHHhcCC
Confidence            9999999988764

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.19  E-value=4.9e-10  Score=74.26  Aligned_cols=87  Identities=37%  Similarity=0.546  Sum_probs=73.9

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCcccccccccccCCCeEEEcCCCC
Q 031190           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTK  149 (164)
Q Consensus        70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~v~~vm~~~~~~~~v~~~~~  149 (164)
                      ++.++++++++.++++.|.+.+++++||+  |++++++|+|+..|+++.+. .+. ....++.++|..  .++++.++++
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~--d~~~~~~G~v~~~~l~~~~~-~~~-~~~~~v~~~~~~--~~~~v~~~~~   75 (112)
T cd04624           2 PVVTVDPDTSIREAAKLMAEENVGSVVVV--DPDERPIGIVTERDIVRAVA-AGI-DLDTPVSEIMTR--DLVTVDPDEP   75 (112)
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCCEEEEE--CCCCCEEEEeeHHHHHHHHh-ccC-CCccCHHHhccC--CCEEECCCCc
Confidence            47889999999999999999999999999  77799999999999976544 222 234678899988  5889999999


Q ss_pred             HHHHHHHHHhCCC
Q 031190          150 VLRAMQLMTGHML  162 (164)
Q Consensus       150 l~e~~~~m~~~~~  162 (164)
                      +.+++..|.+++.
T Consensus        76 ~~~~~~~~~~~~~   88 (112)
T cd04624          76 VAEAAKLMRKNNI   88 (112)
T ss_pred             HHHHHHHHHHcCc
Confidence            9999999987654

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>TIGR01137 cysta_beta cystathionine beta-synthase

Probab=99.19  E-value=2.3e-10  Score=94.04  Aligned_cols=100  Identities=20%  Similarity=0.297  Sum_probs=84.5

Q ss_pred             cccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCcccc
Q 031190           51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTK  130 (164)
Q Consensus        51 ~~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~  130 (164)
                      +...+++++|.+       ++.++.+++++.++++.|.+++++.+||+  |++++++|+|+.+|+++.+.... ...+.+
T Consensus       332 l~~~~v~~im~~-------~~~~v~~~~tl~ea~~~m~~~~~~~~~Vv--d~~~~~~Givt~~dl~~~~~~~~-~~~~~~  401 (454)
T TIGR01137       332 LKNATVKDLHLP-------APVTVHPTETVGDAIEILREYGFDQLPVV--TEAGKVLGSVTLRELLSALFAGK-ANPDDA  401 (454)
T ss_pred             hccCCHHHhCcC-------CCeEECCCCcHHHHHHHHHHcCCCEEEEE--cCCCeEEEEEEHHHHHHHHhccC-CCcCCC
Confidence            356889999987       59999999999999999999999999999  77889999999999977554321 223457


Q ss_pred             cccccccCCCeEEEcCCCCHHHHHHHHHhCCC
Q 031190          131 VGDIMTEENKLITVSPDTKVLRAMQLMTGHML  162 (164)
Q Consensus       131 v~~vm~~~~~~~~v~~~~~l~e~~~~m~~~~~  162 (164)
                      +.++|.+  ++.++++++++.+++++|.+++.
T Consensus       402 v~~im~~--~~~~v~~~~~l~~a~~~~~~~~~  431 (454)
T TIGR01137       402 VSKVMSK--KFIQIGEGEKLSDLSKFLEKNSS  431 (454)
T ss_pred             HHHhcCC--CCeEECCcCcHHHHHHHHHHCCe
Confidence            9999988  58899999999999999987653

Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.

>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=99.19  E-value=2.9e-10  Score=75.11  Aligned_cols=82  Identities=30%  Similarity=0.353  Sum_probs=72.2

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCcccccccccccCCCeEEEcCCCC
Q 031190           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTK  149 (164)
Q Consensus        70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~v~~vm~~~~~~~~v~~~~~  149 (164)
                      ++.++++++++.++++.|.+.+.+.+||+  |++|+++|+|+..+++..       ....++.++|..  .+.+++++++
T Consensus         3 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~--d~~~~~~G~v~~~~l~~~-------~~~~~v~~~~~~--~~~~v~~~~~   71 (108)
T cd04596           3 DTGYLTTTDTVKDWHELNKETGHSRFPVV--DEKNKVVGIVTSKDVAGK-------DPDTTIEKVMTK--NPITVNPKTS   71 (108)
T ss_pred             ccEEeCCCCCHHHHHHHHHHcCCCceeEE--CCCCeEEEEecHHHHhcc-------cccccHHHHhcC--CCeEECCCCC
Confidence            58999999999999999999999999999  788999999999999541       134679999987  5899999999


Q ss_pred             HHHHHHHHHhCCC
Q 031190          150 VLRAMQLMTGHML  162 (164)
Q Consensus       150 l~e~~~~m~~~~~  162 (164)
                      +.++++.|.+++.
T Consensus        72 l~~~~~~~~~~~~   84 (108)
T cd04596          72 VASVAHMMIWEGI   84 (108)
T ss_pred             HHHHHHHHHHcCC
Confidence            9999999988765

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.19  E-value=4e-10  Score=74.62  Aligned_cols=87  Identities=18%  Similarity=0.293  Sum_probs=73.4

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCcccccccccccCCCeEEEcCCCC
Q 031190           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTK  149 (164)
Q Consensus        70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~v~~vm~~~~~~~~v~~~~~  149 (164)
                      ++.++++++++.++++.|.+++++++||+  |++|+++|+++..|++.... .. ...+.++.++|.+  ++.++.++++
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~--d~~~~~~G~v~~~dl~~~~~-~~-~~~~~~v~~~~~~--~~~~v~~~~~   75 (111)
T cd04626           2 DFPTIDEDASIREALHEMLKYNTNEIIVK--DNEEKLKGVVTFTDILDLDL-FE-SFLEKKVFNIVSQ--DVFYVNEEDT   75 (111)
T ss_pred             CceEECCCccHHHHHHHHHHhCCCeEEEE--cCCCCEEEEEehHHhHHHHh-hc-ccccCcHHHHhcC--CcEEEcCCCc
Confidence            47889999999999999999999999999  77899999999999965332 11 1124578899988  5899999999


Q ss_pred             HHHHHHHHHhCCC
Q 031190          150 VLRAMQLMTGHML  162 (164)
Q Consensus       150 l~e~~~~m~~~~~  162 (164)
                      +.+++..|.+++.
T Consensus        76 l~~~~~~~~~~~~   88 (111)
T cd04626          76 IDEALDIMREKQI   88 (111)
T ss_pred             HHHHHHHHHHcCC
Confidence            9999999988865

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=99.19  E-value=3e-10  Score=94.19  Aligned_cols=124  Identities=20%  Similarity=0.289  Sum_probs=94.2

Q ss_pred             ccccccccccccchhhh----hcC-c----ccccHHHHhh---hcCCCCC---CCceEecCCCcHHHHHHHHHHcCCCeE
Q 031190           31 RPVVSSRFESVSSARME----EHG-F----ESTTISDILK---AKGKGAD---GSWLWCTTDDTVYDAVKSMTQHNVGAL   95 (164)
Q Consensus        31 ~~~~~~~~~~~~~~~~~----~~~-~----~~~~v~dim~---~~~~~~~---~~~~~v~~~~tl~~a~~~~~~~~~~~i   95 (164)
                      .|.+++.|+++++..|+    +.| +    .++++.+...   ..+++++   .++.++++++++.+++++|.+++++.+
T Consensus        51 ~Pii~a~M~~vt~~~ma~a~a~~GglGvi~~~~~~e~~~~~v~kvk~~e~g~i~dpvtv~pd~tv~eA~~lm~~~~~s~v  130 (495)
T PTZ00314         51 IPIVSSPMDTVTEHKMAIAMALMGGIGVIHNNCSIEEQVEEVRKVKRFENGFIMDPYVLSPNHTVADVLEIKEKKGFSSI  130 (495)
T ss_pred             CceeecCccccccHHHHHHHHHCCCeEEecCCCCHHHHHHHHhhccccccccccCCeecCCCCCHHHHHHHHHHcCCcEE
Confidence            58899999999998888    222 2    3444433221   1122222   278999999999999999999999999


Q ss_pred             EEEecCC---CCcEEEEEehHHHHHHHHHcCCCCcccccccccccCCCeEEEcCCCCHHHHHHHHHhCCC
Q 031190           96 VVVKPGE---QKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTGHML  162 (164)
Q Consensus        96 pVv~~d~---~~~~vGivt~~dil~~~~~~~~~~~~~~v~~vm~~~~~~~~v~~~~~l~e~~~~m~~~~~  162 (164)
                      ||+  |+   +++++|+|+.+|+. ..     ...+.++.++|++..+++++++++++.+++++|.+++.
T Consensus       131 pVv--d~~~~~gkLvGIVt~~DL~-~~-----~~~~~~V~diMt~~~~lvtv~~~~sl~eAl~lm~e~~i  192 (495)
T PTZ00314        131 LIT--VDGKVGGKLLGIVTSRDID-FV-----KDKSTPVSEVMTPREKLVVGNTPISLEEANEVLRESRK  192 (495)
T ss_pred             EEE--eCCccCCeEEEEEEHHHHh-hc-----ccCCCCHHHhhCCcCCceEeCCCCCHHHHHHHHHHcCC
Confidence            999  55   37999999999984 21     12357899999862248899999999999999998876

>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.18  E-value=5.1e-10  Score=74.19  Aligned_cols=88  Identities=36%  Similarity=0.607  Sum_probs=72.6

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCcccccccccccCCCeEEEcCCCC
Q 031190           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTK  149 (164)
Q Consensus        70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~v~~vm~~~~~~~~v~~~~~  149 (164)
                      ++.++.+++++.++.+.|.+++++++||+  ++ |+++|+++..|++.+....+......++.++|..  ++.++.++++
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~--~~-~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~   76 (113)
T cd04622           2 DVVTVSPDDTIREAARLMREHDVGALPVC--EN-DRLVGIVTDRDIVVRAVAEGRDPDTTTVGDVMTR--GVVTVTEDDD   76 (113)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEe--eC-CEEEEEEEhHHHHHHHhhccCCcccCCHHHhccC--CccEECCCCC
Confidence            48899999999999999999999999999  66 9999999999986443333222223358999988  5889999999


Q ss_pred             HHHHHHHHHhCCC
Q 031190          150 VLRAMQLMTGHML  162 (164)
Q Consensus       150 l~e~~~~m~~~~~  162 (164)
                      +.++++.|.+.+.
T Consensus        77 ~~~~~~~~~~~~~   89 (113)
T cd04622          77 VDEAARLMREHQV   89 (113)
T ss_pred             HHHHHHHHHHcCC
Confidence            9999999987765

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=99.18  E-value=2.3e-10  Score=94.85  Aligned_cols=115  Identities=29%  Similarity=0.427  Sum_probs=92.9

Q ss_pred             ccccccccccccchhhh----hcC---c--ccc-------------cHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHH
Q 031190           31 RPVVSSRFESVSSARME----EHG---F--EST-------------TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMT   88 (164)
Q Consensus        31 ~~~~~~~~~~~~~~~~~----~~~---~--~~~-------------~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~   88 (164)
                      .|.++++|+++++..|+    +.+   +  .++             .++++|..       ++.++++++++.++++.|.
T Consensus        42 ~Piv~a~m~~vT~~ela~ava~~GglG~i~~~~~~e~~~~~I~~vk~~~dim~~-------~~v~i~~~~tv~ea~~~m~  114 (486)
T PRK05567         42 IPLLSAAMDTVTEARMAIAMAREGGIGVIHKNMSIEEQAEEVRKVKRSESGVVT-------DPVTVTPDTTLAEALALMA  114 (486)
T ss_pred             cCEEeCCCCCcCHHHHHHHHHhCCCCCEecCCCCHHHHHHHHHHhhhhhhcccC-------CCeEeCCCCCHHHHHHHHH
Confidence            58899999999988886    111   1  111             33455554       6999999999999999999


Q ss_pred             HcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCcccccccccc-cCCCeEEEcCCCCHHHHHHHHHhCCC
Q 031190           89 QHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMT-EENKLITVSPDTKVLRAMQLMTGHML  162 (164)
Q Consensus        89 ~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~v~~vm~-~~~~~~~v~~~~~l~e~~~~m~~~~~  162 (164)
                      +++++.+||+  |++++++|+|+.+|+...      .....++.++|+ .  +++++++++++.++++.|.++++
T Consensus       115 ~~~~~~lpVv--d~~g~lvGiVt~~DL~~~------~~~~~~V~dim~~~--~~v~v~~~~sl~eal~~m~~~~~  179 (486)
T PRK05567        115 RYGISGVPVV--DENGKLVGIITNRDVRFE------TDLSQPVSEVMTKE--RLVTVPEGTTLEEALELLHEHRI  179 (486)
T ss_pred             HhCCCEEEEE--ccCCEEEEEEEHHHhhhc------ccCCCcHHHHcCCC--CCEEECCCCCHHHHHHHHHHcCC
Confidence            9999999999  788999999999998531      123468999998 4  58999999999999999988875

>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream

Probab=99.18  E-value=5.6e-10  Score=74.22  Aligned_cols=86  Identities=22%  Similarity=0.387  Sum_probs=73.4

Q ss_pred             ceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCcccccccccccCCCeEEEcCCCCH
Q 031190           71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKV  150 (164)
Q Consensus        71 ~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~v~~vm~~~~~~~~v~~~~~l  150 (164)
                      +.++.+++++.++++.|...+...+||+  |++|+++|+|+.+|+++.+. ... ....++.++|.+  .+.++++++++
T Consensus         4 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~--d~~~~~~G~v~~~dl~~~~~-~~~-~~~~~v~~~~~~--~~~~v~~~~~l   77 (113)
T cd04607           4 QLLVSPDASILDALRKIDKNALRIVLVV--DENGRLLGTVTDGDIRRALL-KGL-SLDDPVSEVMNR--NPITAKVGSSR   77 (113)
T ss_pred             ceEECCCCCHHHHHHHHHhcCcCEEEEE--CCCCCEEEEEEcHHHHHHHh-cCC-CcCCCHHHhhcC--CCEEEcCCCCH
Confidence            7889999999999999999899999999  77899999999999966443 222 234578999988  58899999999


Q ss_pred             HHHHHHHHhCCC
Q 031190          151 LRAMQLMTGHML  162 (164)
Q Consensus       151 ~e~~~~m~~~~~  162 (164)
                      .++++.|.+++.
T Consensus        78 ~~~~~~~~~~~~   89 (113)
T cd04607          78 EEILALMRERSI   89 (113)
T ss_pred             HHHHHHHHHCCC
Confidence            999999998865

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.18  E-value=3.7e-10  Score=75.99  Aligned_cols=89  Identities=28%  Similarity=0.473  Sum_probs=74.1

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCC--------CcccccccccccCCCe
Q 031190           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRS--------SKSTKVGDIMTEENKL  141 (164)
Q Consensus        70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~--------~~~~~v~~vm~~~~~~  141 (164)
                      ++.++.+++++.++.+.|.+.+++.+||+  +++|+++|+++.+++++........        ....++.++|..  ++
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~--~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~   77 (122)
T cd04803           2 PVVTLSEDDSLADAEELMREHRIRHLPVV--NEDGKLVGLLTQRDLLRAALSSLSDNGEESLTKERDVPVAEVMKT--DV   77 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCcccccEE--CCCCCEEEEEEHHHHHHHhccccccccccccccccCcCHHHhhCC--CC
Confidence            48889999999999999999999999999  7779999999999997644321111        135678899988  58


Q ss_pred             EEEcCCCCHHHHHHHHHhCCC
Q 031190          142 ITVSPDTKVLRAMQLMTGHML  162 (164)
Q Consensus       142 ~~v~~~~~l~e~~~~m~~~~~  162 (164)
                      .++++++++.++++.|.+++.
T Consensus        78 ~~v~~~~~~~~~~~~~~~~~~   98 (122)
T cd04803          78 LTVTPDTPLREAAEIMVENKI   98 (122)
T ss_pred             eEeCCCCcHHHHHHHHHHcCC
Confidence            999999999999999988765

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

Probab=99.17  E-value=1.6e-10  Score=94.69  Aligned_cols=99  Identities=26%  Similarity=0.453  Sum_probs=89.6

Q ss_pred             cccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCcccccc
Q 031190           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVG  132 (164)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~v~  132 (164)
                      ...+++++..       ++++|++..++.+|...|..++.+.+.|+  +++++..||||.+|+..++...+. ....+|+
T Consensus       148 ~trv~~~~~~-------~~~~v~~~~~i~~aa~km~~~gv~s~v~l--~~~~~~~GIvT~~dl~~~v~~~g~-~~~~~V~  217 (610)
T COG2905         148 LTRVGEVKTL-------PAVTVSPQASIQDAARKMKDEGVSSLVVL--DDSGPLLGIVTRKDLRSRVIADGR-SKTQKVS  217 (610)
T ss_pred             HHHHHHHhcC-------CCcccCccCcHHHHHHHHHhcCCCeEEEE--cCCCCccceeehHHHHHHHHhcCC-Ccccchh
Confidence            3577888887       69999999999999999999999999999  788999999999999988887664 4678999


Q ss_pred             cccccCCCeEEEcCCCCHHHHHHHHHhCCCC
Q 031190          133 DIMTEENKLITVSPDTKVLRAMQLMTGHMLL  163 (164)
Q Consensus       133 ~vm~~~~~~~~v~~~~~l~e~~~~m~~~~~~  163 (164)
                      ++|+.  ++++|+.++.+.||+-.|.+++++
T Consensus       218 evmT~--p~~svd~~~~~feAml~m~r~~I~  246 (610)
T COG2905         218 EVMTS--PVISVDRGDFLFEAMLMMLRNRIK  246 (610)
T ss_pred             hhhcc--CceeecCcchHHHHHHHHHHhCCc
Confidence            99999  699999999999999999999874

>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.17  E-value=5.2e-10  Score=74.22  Aligned_cols=87  Identities=26%  Similarity=0.343  Sum_probs=73.5

Q ss_pred             ceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCcccccccccccCCCeEEEcCCCCH
Q 031190           71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKV  150 (164)
Q Consensus        71 ~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~v~~vm~~~~~~~~v~~~~~l  150 (164)
                      +..+.+++++.++++.|.+.+.+.+||+  |++++++|+|+..|+++..... ......++.++|.+  ++.+++.++++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~vv--d~~~~~~G~v~~~dl~~~~~~~-~~~~~~~i~~~~~~--~~~~v~~~~~l   77 (113)
T cd04615           3 PSCVVLNTDIARAVAEMYTSGSRALPVV--DDKKRLVGIITRYDVLSYALES-EELKDAKVREVMNS--PVITIDANDSI   77 (113)
T ss_pred             CEEeeCCCcHHHHHHHHHHcCCceEeEE--cCCCCEEEEEEHHHHHHhhhhh-hhhcCCcHHHhccC--CceEECCCCcH
Confidence            7889999999999999999999999999  7789999999999997644322 12245678999987  59999999999


Q ss_pred             HHHHHHHHhCCC
Q 031190          151 LRAMQLMTGHML  162 (164)
Q Consensus       151 ~e~~~~m~~~~~  162 (164)
                      .++++.|.+++.
T Consensus        78 ~~~~~~~~~~~~   89 (113)
T cd04615          78 AKARWLMSNNNI   89 (113)
T ss_pred             HHHHHHHHHcCC
Confidence            999999987764

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.17  E-value=3.1e-10  Score=74.28  Aligned_cols=71  Identities=14%  Similarity=0.320  Sum_probs=62.3

Q ss_pred             ceEecCCCcHHHHHHHHHHcCCCeEEEEecCC-CCcEEEEEehHHHHHHHHHcCCCCcccccccccccCCCeEEEcCCCC
Q 031190           71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGE-QKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTK  149 (164)
Q Consensus        71 ~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~-~~~~vGivt~~dil~~~~~~~~~~~~~~v~~vm~~~~~~~~v~~~~~  149 (164)
                      +.++++++++.+|.+.|.+++++++||+  |+ +|+++|+||.+|+.+..       .             +.++.++++
T Consensus         3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vv--d~~~~~~~Givt~~Dl~~~~-------~-------------~~~v~~~~~   60 (98)
T cd04618           3 LVVFDTKLPVKKAFNALVENGIRSAPLW--DSRKQQFVGMLTITDFILIL-------R-------------LVSIHPERS   60 (98)
T ss_pred             EEEECCCCcHHHHHHHHHHcCCceEEEE--eCCCCEEEEEEEHHHHhhhe-------e-------------eEEeCCCCc
Confidence            8899999999999999999999999999  66 48999999999995421       0             568999999


Q ss_pred             HHHHHHHHHhCCCC
Q 031190          150 VLRAMQLMTGHMLL  163 (164)
Q Consensus       150 l~e~~~~m~~~~~~  163 (164)
                      +.+|+++|.+++++
T Consensus        61 l~~a~~~m~~~~~~   74 (98)
T cd04618          61 LFDAALLLLKNKIH   74 (98)
T ss_pred             HHHHHHHHHHCCCC
Confidence            99999999988763

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.17  E-value=8e-10  Score=73.23  Aligned_cols=88  Identities=35%  Similarity=0.621  Sum_probs=73.3

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCcccccccccccCCCeEEEcCCCC
Q 031190           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTK  149 (164)
Q Consensus        70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~v~~vm~~~~~~~~v~~~~~  149 (164)
                      ++.++++++++.++++.|.+.+.+.+||+  |+ ++++|+++..|+++.+..........++.++|.+  ++.++.++++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~-~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~   76 (112)
T cd04802           2 NVITVDPDTTVYEAANIMTENNIGRLIVV--DN-EKPVGIITERDLVKKVVSRNLKPREVPVGEVMST--PLITIDPNAS   76 (112)
T ss_pred             CcEEECCCCCHHHHHHHHHHCCCCEEEEE--EC-CEEEEEEEHHHHHHHHhhccCCcccCCHHHhcCC--CcEEECCCCC
Confidence            47889999999999999999899999999  54 4999999999998755433211235678999987  5889999999


Q ss_pred             HHHHHHHHHhCCC
Q 031190          150 VLRAMQLMTGHML  162 (164)
Q Consensus       150 l~e~~~~m~~~~~  162 (164)
                      +.++++.|.+++.
T Consensus        77 l~~~~~~~~~~~~   89 (112)
T cd04802          77 LNEAAKLMAKHGI   89 (112)
T ss_pred             HHHHHHHHHHcCC
Confidence            9999999988775

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=99.16  E-value=9e-10  Score=72.93  Aligned_cols=87  Identities=34%  Similarity=0.463  Sum_probs=73.1

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCcccccccccccCCCeEEEcCCCC
Q 031190           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTK  149 (164)
Q Consensus        70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~v~~vm~~~~~~~~v~~~~~  149 (164)
                      +++.++++.++.++++.|.+.+...+||+  |+ ++++|+++..|+++... ........++.++|.+  ++.+++++++
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~--d~-~~~~G~v~~~~l~~~~~-~~~~~~~~~i~~~~~~--~~~~v~~~~~   75 (111)
T cd04589           2 PPLIVDASTSIRDAARLMREHGADALLVR--DG-DPRLGIVTRTDLLDAVL-LDGLPSSTPVGEIATF--PLITVDPDDF   75 (111)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEe--cC-CeEEEEEEHHHHHHHHH-cCCCCCCCCHHHHhCC--CcEEECCCCc
Confidence            47889999999999999999899999999  66 89999999999976443 2222245678999988  5899999999


Q ss_pred             HHHHHHHHHhCCC
Q 031190          150 VLRAMQLMTGHML  162 (164)
Q Consensus       150 l~e~~~~m~~~~~  162 (164)
                      +.++++.|.+++.
T Consensus        76 l~~~~~~~~~~~~   88 (111)
T cd04589          76 LFNALLLMTRHRI   88 (111)
T ss_pred             HHHHHHHHHHhCc
Confidence            9999999988765

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or

>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=99.16  E-value=7.4e-10  Score=73.27  Aligned_cols=87  Identities=33%  Similarity=0.586  Sum_probs=73.5

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCcccccccccccCCCeEEEcCCCC
Q 031190           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTK  149 (164)
Q Consensus        70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~v~~vm~~~~~~~~v~~~~~  149 (164)
                      ++.++++++++.++.+.|.+++++.+||+  |+ ++++|+|+..+++..+...+ .....++.++|..  ++++++++++
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~--~~-~~~~G~v~~~~l~~~~~~~~-~~~~~~i~~~~~~--~~~~v~~~~~   75 (111)
T cd04800           2 PPVTCSPDTTIREAARLMTEHRVSSLLVV--DD-GRLVGIVTDRDLRNRVVAEG-LDPDTPVSEVMTA--PPITIPPDAT   75 (111)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeEEEE--EC-CEEEEEEEhHHHHHHHhccC-CCccCCHHHHhCC--CCeEECCCCc
Confidence            48889999999999999998889999999  65 99999999999976544322 2234678899988  5899999999


Q ss_pred             HHHHHHHHHhCCC
Q 031190          150 VLRAMQLMTGHML  162 (164)
Q Consensus       150 l~e~~~~m~~~~~  162 (164)
                      +.++++.|.+++.
T Consensus        76 l~~~~~~~~~~~~   88 (111)
T cd04800          76 VFEALLLMLERGI   88 (111)
T ss_pred             HHHHHHHHHHcCC
Confidence            9999999998865

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa

>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=99.15  E-value=6.6e-10  Score=73.14  Aligned_cols=86  Identities=34%  Similarity=0.470  Sum_probs=71.5

Q ss_pred             CCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCcccccccccccCCCeEEEcCCC
Q 031190           69 GSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDT  148 (164)
Q Consensus        69 ~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~v~~vm~~~~~~~~v~~~~  148 (164)
                      |++.++.+++++.++++.|.+++++++||+  ++ ++++|+++..|+++.+. ........++.++|.+  ++.++++++
T Consensus         1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~--~~-~~~~G~v~~~dl~~~~~-~~~~~~~~~~~~~~~~--~~~~v~~~~   74 (110)
T cd04609           1 GDVVSVAPDDTVSQAIERMREYGVSQLPVV--DD-GRVVGSIDESDLLDALI-EGKAKFSLPVREVMGE--PLPTVDPDA   74 (110)
T ss_pred             CCcEEECCCCcHHHHHHHHHHcCCceeeEe--eC-CeeEEEEeHHHHHHHHh-ccccccCcCHHHHhcC--CCceeCCCC
Confidence            368899999999999999999999999999  66 89999999999976543 2212124678899987  588999999


Q ss_pred             CHHHHHHHHHhC
Q 031190          149 KVLRAMQLMTGH  160 (164)
Q Consensus       149 ~l~e~~~~m~~~  160 (164)
                      ++.+++.+|.+.
T Consensus        75 ~l~~~~~~~~~~   86 (110)
T cd04609          75 PIEELSELLDRG   86 (110)
T ss_pred             cHHHHHHHHHhC
Confidence            999999999773

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote

>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

Probab=99.14  E-value=8.7e-10  Score=72.88  Aligned_cols=85  Identities=28%  Similarity=0.359  Sum_probs=72.9

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCcccccccccccCCCeEEEcCCCC
Q 031190           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTK  149 (164)
Q Consensus        70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~v~~vm~~~~~~~~v~~~~~  149 (164)
                      ++.+++.+.++.++.+.|.+++++++||+  |+ |+++|+|+..|+++.. ...  ....++.++|.+  ++.+++++++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~--d~-~~~~G~v~~~dl~~~~-~~~--~~~~~~~~~~~~--~~~~v~~~~~   74 (110)
T cd04595           3 PVKTVRPEATIEEARELLLRYGHTALPVV--EG-GRVVGIISRRDVEKAL-RHG--LGHAPVKDYMST--DVVTVPPDTP   74 (110)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCCCeeeEe--eC-CEEEEEEEHHHHHHHH-hcc--cccCcHHHHhcC--CCEEECCCCc
Confidence            58899999999999999999899999999  66 9999999999996543 222  245789999988  5999999999


Q ss_pred             HHHHHHHHHhCCC
Q 031190          150 VLRAMQLMTGHML  162 (164)
Q Consensus       150 l~e~~~~m~~~~~  162 (164)
                      +.+++.+|.+++.
T Consensus        75 l~~~~~~~~~~~~   87 (110)
T cd04595          75 LSEVQELMVEHDI   87 (110)
T ss_pred             HHHHHHHHHHcCC
Confidence            9999999988764

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=99.14  E-value=1.1e-09  Score=72.09  Aligned_cols=83  Identities=25%  Similarity=0.355  Sum_probs=71.4

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCcccccccccccCCCeEEEcCCCC
Q 031190           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTK  149 (164)
Q Consensus        70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~v~~vm~~~~~~~~v~~~~~  149 (164)
                      ++..+++++++.++++.|.++++.++||+  |++++++|+|+..|++....      ...++.++|..  .+.+++++++
T Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~--d~~~~~~G~v~~~dl~~~~~------~~~~v~~~~~~--~~~~v~~~~~   72 (109)
T cd04583           3 NPVTITPDRTLAEAIKLMRDKKVDSLLVV--DKDNKLLGIVSLESLEQAYK------EAKSLEDIMLE--DVFTVQPDAS   72 (109)
T ss_pred             CCEEECCCCCHHHHHHHHHHCCCceEEEE--cCCCcEEEEEEHHHHHHHhh------cCCcHhHhhcC--CceEECCCCc
Confidence            48889999999999999999999999999  77799999999999965321      23578899988  5899999999


Q ss_pred             HHHHHHHHHhCCC
Q 031190          150 VLRAMQLMTGHML  162 (164)
Q Consensus       150 l~e~~~~m~~~~~  162 (164)
                      +.++++.|.+++.
T Consensus        73 ~~~~~~~~~~~~~   85 (109)
T cd04583          73 LRDVLGLVLKRGP   85 (109)
T ss_pred             HHHHHHHHHHcCC
Confidence            9999999988654

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz

>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.14  E-value=1.2e-09  Score=72.40  Aligned_cols=88  Identities=26%  Similarity=0.416  Sum_probs=71.6

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCcccccccccccCCCeEEEcCCCC
Q 031190           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTK  149 (164)
Q Consensus        70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~v~~vm~~~~~~~~v~~~~~  149 (164)
                      .+.++.+++++.++++.|.++++..++|.  + +|+++|+++..|+++.+..........++.++|+.  .+.+++++++
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~--~-~~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~   76 (112)
T cd04625           2 TIYTVAPETLLSEAVATMAEQDLGSLVVM--E-RGELVGLLTFREVLQAMAQHGAGVLDTTVRAIMNP--EPIVASPDDS   76 (112)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCCeEEEe--e-CCEEEEEEEHHHHHHHHHhcCCchhcCCHHHHhCC--CCeEECCCCC
Confidence            47889999999999999988888888777  4 48999999999997655422112234679999988  5889999999


Q ss_pred             HHHHHHHHHhCCC
Q 031190          150 VLRAMQLMTGHML  162 (164)
Q Consensus       150 l~e~~~~m~~~~~  162 (164)
                      +.++++.|.+++.
T Consensus        77 l~~a~~~m~~~~~   89 (112)
T cd04625          77 IDEVRRLMVERHL   89 (112)
T ss_pred             HHHHHHHHHHcCC
Confidence            9999999988765

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

Probab=99.14  E-value=6.8e-10  Score=76.34  Aligned_cols=89  Identities=28%  Similarity=0.455  Sum_probs=74.2

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCC---------------------CCcc
Q 031190           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGR---------------------SSKS  128 (164)
Q Consensus        70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~---------------------~~~~  128 (164)
                      ++.++.+++++.++++.|.++++.++||+  |++++++|+|+..|+++.......                     ....
T Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv--d~~~~~~Gvi~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (135)
T cd04586           3 DVVTVSPETSVAEAARLMLDNHISGLPVV--DDDGRLVGIVSEGDLLRRAELGTERRRARWLDLLAGAEELAAAFVRSHG   80 (135)
T ss_pred             CCEEeCCCCCHHHHHHHHHHcCCCCceEE--CCCCCEEEEeeHHHHHHHhcccCcchhhhHHHHhcchHHHHHHHHHhcC
Confidence            58899999999999999999999999999  788999999999999764322100                     0123


Q ss_pred             cccccccccCCCeEEEcCCCCHHHHHHHHHhCCC
Q 031190          129 TKVGDIMTEENKLITVSPDTKVLRAMQLMTGHML  162 (164)
Q Consensus       129 ~~v~~vm~~~~~~~~v~~~~~l~e~~~~m~~~~~  162 (164)
                      .++.++|.+  ++.++.+++++.+++..|.+++.
T Consensus        81 ~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~  112 (135)
T cd04586          81 RKVADVMTR--PVVTVGEDTPLAEVAELMEEHRI  112 (135)
T ss_pred             CCHHHHhCC--CceEeCCCCcHHHHHHHHHHcCC
Confidence            578899988  58999999999999999998876

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=99.13  E-value=1.2e-09  Score=71.69  Aligned_cols=81  Identities=26%  Similarity=0.289  Sum_probs=70.2

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCcccccccccccCCCeEEEcCCCC
Q 031190           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTK  149 (164)
Q Consensus        70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~v~~vm~~~~~~~~v~~~~~  149 (164)
                      ++.+++++.++.+|++.|.+.+.+.+||+  |++|+++|+++..|+++.        ...++.++|.+  .+.++.++++
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~--d~~g~~~Giv~~~dl~~~--------~~~~~~~~~~~--~~~~~~~~~~   69 (106)
T cd04582           2 EPITVRPDDPLSDALGLMDDSDLRALTVV--DADGQPLGFVTRREAARA--------SGGCCGDHAEP--FKVTVSVDDD   69 (106)
T ss_pred             CCcEecCCCcHHHHHHHHHhcCCCEEEEE--CCCCCEEEEEeHHHHHHh--------cccchhhhccc--CCEEECCCCC
Confidence            48899999999999999998889999999  778999999999999652        11357889987  4788999999


Q ss_pred             HHHHHHHHHhCCC
Q 031190          150 VLRAMQLMTGHML  162 (164)
Q Consensus       150 l~e~~~~m~~~~~  162 (164)
                      +.++++.|.+++.
T Consensus        70 ~~~~~~~~~~~~~   82 (106)
T cd04582          70 LRIVLSRMFAHDM   82 (106)
T ss_pred             HHHHHHHHHHCCC
Confidence            9999999998875

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi

>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

Probab=99.12  E-value=1e-09  Score=72.74  Aligned_cols=88  Identities=27%  Similarity=0.425  Sum_probs=73.7

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCcccccccccccCCCeEEEcCCCC
Q 031190           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTK  149 (164)
Q Consensus        70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~v~~vm~~~~~~~~v~~~~~  149 (164)
                      ++.++.+++++.++++.+.+.+++.+||+  |++|+++|+|+..++++.+. ........++.++|.+  ++.+++++++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--d~~~~~~G~v~~~~i~~~~~-~~~~~~~~~v~~~~~~--~~~~v~~~~~   77 (114)
T cd04604           3 ALPLVSPDTSLKDALLEMSRKGLGMTAVV--DEDGRLVGIFTDGDLRRALE-KGLDILTLPVADVMTR--NPKTIDPDAL   77 (114)
T ss_pred             cccccCCCCcHHHHHHHHHhcCccEEEEE--cCCCCEEEEechHHHHHHHh-ccCccccCCHHHhhcc--CCeEECCCCc
Confidence            47889999999999999988889999999  77899999999999976543 3222234579999988  5889999999


Q ss_pred             HHHHHHHHHhCCC
Q 031190          150 VLRAMQLMTGHML  162 (164)
Q Consensus       150 l~e~~~~m~~~~~  162 (164)
                      +.++++.|.+++.
T Consensus        78 ~~~~~~~~~~~~~   90 (114)
T cd04604          78 AAEALELMEENKI   90 (114)
T ss_pred             HHHHHHHHHHcCC
Confidence            9999999987754

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct

>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

Probab=99.12  E-value=1.2e-09  Score=72.05  Aligned_cols=86  Identities=36%  Similarity=0.571  Sum_probs=72.4

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCcccccccccccCCCeEEEcCCCC
Q 031190           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTK  149 (164)
Q Consensus        70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~v~~vm~~~~~~~~v~~~~~  149 (164)
                      ++.++.+++++.++++.|.+.+++.+||+  ++ ++++|+++.+|+++... .+.. ...++.++|.+  ++.+++++++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~--~~-~~~~G~v~~~~l~~~~~-~~~~-~~~~v~~~~~~--~~~~~~~~~~   74 (111)
T cd04611           2 QILTCPPDTSLAEAASRMRERRISSIVVV--DD-GRPLGIVTERDILRLLA-SGPD-LQTPVGEVMSS--PLLTVPADTS   74 (111)
T ss_pred             CceEECCCCcHHHHHHHHHHcCCCEEEEe--eC-CEEEEEEeHHHHHHHHh-cCCC-CCcCHHHhcCC--CceEECCCCC
Confidence            47889999999999999999889999999  55 89999999999976543 2211 45678999988  5899999999


Q ss_pred             HHHHHHHHHhCCC
Q 031190          150 VLRAMQLMTGHML  162 (164)
Q Consensus       150 l~e~~~~m~~~~~  162 (164)
                      +.++++.|.+.+.
T Consensus        75 l~~~l~~~~~~~~   87 (111)
T cd04611          75 LYDARQLMREHGI   87 (111)
T ss_pred             HHHHHHHHHHcCC
Confidence            9999999987764

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB

>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.12  E-value=7e-10  Score=75.38  Aligned_cols=89  Identities=21%  Similarity=0.308  Sum_probs=69.7

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCcc-------------cccccccc
Q 031190           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKS-------------TKVGDIMT  136 (164)
Q Consensus        70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~-------------~~v~~vm~  136 (164)
                      .+.++++++++.+|++.|.+++++++||+  |++|+++|+|+..|+++...... ....             ....+.|.
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~--d~~~~~~Giv~~~dl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~   78 (126)
T cd04642           2 KVVSIDSDERVLDAFKLMRKNNISGLPVV--DEKGKLIGNISASDLKGLLLSPD-DLLLYRTITFKELSEKFTDSDGVKS   78 (126)
T ss_pred             CeEEECCCccHHHHHHHHHHhCCCcccEE--CCCCcEEEEEEHHHhhhhhcCcc-hhhcccchhhhhhhhhccccccccc
Confidence            37899999999999999999999999999  77899999999999976442111 1011             11224555


Q ss_pred             cCCCeEEEcCCCCHHHHHHHHHhCCCC
Q 031190          137 EENKLITVSPDTKVLRAMQLMTGHMLL  163 (164)
Q Consensus       137 ~~~~~~~v~~~~~l~e~~~~m~~~~~~  163 (164)
                      .  ++.++++++++.+++++|.+++.+
T Consensus        79 ~--~~~~v~~~~~l~~a~~~~~~~~~~  103 (126)
T cd04642          79 R--PLITCTPSSTLKEVITKLVANKVH  103 (126)
T ss_pred             C--CCeEECCCCcHHHHHHHHHHhCCc
Confidence            5  588999999999999999988764

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=99.11  E-value=7.8e-10  Score=91.85  Aligned_cols=124  Identities=17%  Similarity=0.237  Sum_probs=91.9

Q ss_pred             ccccccccccccchhhh----hcC-c----ccccHHHHhh---hcCCCCC---CCceEecCCCcHHHHHHHHHHcCCCeE
Q 031190           31 RPVVSSRFESVSSARME----EHG-F----ESTTISDILK---AKGKGAD---GSWLWCTTDDTVYDAVKSMTQHNVGAL   95 (164)
Q Consensus        31 ~~~~~~~~~~~~~~~~~----~~~-~----~~~~v~dim~---~~~~~~~---~~~~~v~~~~tl~~a~~~~~~~~~~~i   95 (164)
                      .|.+++.|+++++..|+    ..| +    .+.+..+...   ....+++   .+++++++++++.+++++|.+++++.+
T Consensus        55 ~Pivsa~M~~vt~~~lA~Ama~aGGiGfI~~~as~E~q~~~Irkvk~~~~gmi~dpvtV~pd~tV~dA~~lm~~~~~~~l  134 (505)
T PLN02274         55 IPCVSSPMDTVTESDMAIAMAALGGIGIVHYNNTAEEQAAIVRKAKSRRVGFVSDPVVKSPSSTISSLDELKASRGFSSV  134 (505)
T ss_pred             CCEeccCCcccchHHHHHHHHhCCCeEEEcCCCCHHHHHHHHHHhhcccccccCCCeeeCCCCcHHHHHHHHHhcCCceE
Confidence            48888999999988887    222 1    2222222110   0001111   269999999999999999999999999


Q ss_pred             EEEecCC---CCcEEEEEehHHHHHHHHHcCCCCcccccccccccCCCeEEEcCCCCHHHHHHHHHhCCC
Q 031190           96 VVVKPGE---QKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTGHML  162 (164)
Q Consensus        96 pVv~~d~---~~~~vGivt~~dil~~~~~~~~~~~~~~v~~vm~~~~~~~~v~~~~~l~e~~~~m~~~~~  162 (164)
                      ||+  |+   +++++|+||.+|+.. ..     ..+.+|.++|++.++++++++++++.+++++|.+++.
T Consensus       135 pVv--D~~~~~GklvGIVT~~DL~~-v~-----~~~~~V~eIMt~~~~lvtv~~~~sL~eAl~~m~~~~~  196 (505)
T PLN02274        135 CVT--ETGTMGSKLLGYVTKRDWDF-VN-----DRETKLSEVMTSDDDLVTAPAGIDLEEAEAVLKDSKK  196 (505)
T ss_pred             EEE--eCCCcCCeEEEEEEHHHHhh-cc-----ccCCcHHHHhccCCCcEEECCCCCHHHHHHHHHHcCC
Confidence            999  55   489999999999843 21     2467899999974347899999999999999998875

>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=99.11  E-value=1.6e-09  Score=71.47  Aligned_cols=85  Identities=27%  Similarity=0.443  Sum_probs=72.0

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCcccccccccccCCCeEEEcCCCC
Q 031190           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTK  149 (164)
Q Consensus        70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~v~~vm~~~~~~~~v~~~~~  149 (164)
                      ++.++.+++++.++++.|.+.+++++||+  ++ ++++|+++..|+++... .+.  ...++.++|..  ++.+++++++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~-~~~~G~v~~~~l~~~~~-~~~--~~~~v~~~~~~--~~~~v~~~~~   73 (110)
T cd04588           2 PLITLNPNATLREAARLFNTHHIHGAPVV--DD-GKLVGIVTLSDIAHAIA-RGL--ELAKVKDVMTK--DVITIDEDEQ   73 (110)
T ss_pred             CcEEECCCCCHHHHHHHHHHcCCCEEEEe--eC-CEEEEEEEHHHHHHHHh-ccc--cccCHHHHhcC--CceEECCCCC
Confidence            58899999999999999999999999999  66 89999999999976432 221  23678899987  5899999999


Q ss_pred             HHHHHHHHHhCCC
Q 031190          150 VLRAMQLMTGHML  162 (164)
Q Consensus       150 l~e~~~~m~~~~~  162 (164)
                      +.++++.|...+.
T Consensus        74 ~~~~~~~~~~~~~   86 (110)
T cd04588          74 LYDAIRLMNKHNV   86 (110)
T ss_pred             HHHHHHHHHhcCC
Confidence            9999999987764

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.

>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.11  E-value=1.2e-09  Score=74.80  Aligned_cols=88  Identities=31%  Similarity=0.424  Sum_probs=72.8

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCcc--------------------c
Q 031190           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKS--------------------T  129 (164)
Q Consensus        70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~--------------------~  129 (164)
                      ++.++.+++++.++++.|...+++++||+  |++++++|+|+..++++.+.... ....                    .
T Consensus         2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~--d~~~~~~G~i~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~   78 (132)
T cd04636           2 DVITVKKDDTLRDVVEILLTGKISGVPVV--DNEGRVVGIVSEGDLIRKIYKGK-GLFYVTLLYSVIFLDESKIKKLLGK   78 (132)
T ss_pred             CCeEeCCCCcHHHHHHHHHHhCCCccceE--CCCCCEEEEEeHHHHHHHHhccC-CcccccccccccccchHHHHHHcCC
Confidence            58899999999999999998899999999  77899999999999976543221 1111                    2


Q ss_pred             ccccccccCCCeEEEcCCCCHHHHHHHHHhCCC
Q 031190          130 KVGDIMTEENKLITVSPDTKVLRAMQLMTGHML  162 (164)
Q Consensus       130 ~v~~vm~~~~~~~~v~~~~~l~e~~~~m~~~~~  162 (164)
                      ++.++|.+  ++.++.+++++.+++..|.+.+.
T Consensus        79 ~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~  109 (132)
T cd04636          79 KVEEIMTK--KVITVDEDTTIEDVARIMSKKNI  109 (132)
T ss_pred             CHHHhccC--CceEECCCCcHHHHHHHHHHCCC
Confidence            78889988  58999999999999999987764

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.11  E-value=1e-09  Score=74.13  Aligned_cols=88  Identities=28%  Similarity=0.383  Sum_probs=73.1

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEEEEecCCC-CcEEEEEehHHHHHHHHHcCCCC-----------ccccccccccc
Q 031190           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ-KSVAGIITERDYLRKIIVQGRSS-----------KSTKVGDIMTE  137 (164)
Q Consensus        70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~-~~~vGivt~~dil~~~~~~~~~~-----------~~~~v~~vm~~  137 (164)
                      ++.++.++.++.+++++|.+.+++.+||+  |++ |+++|+|+..|+++.+. .....           ...++.++|.+
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~--d~~~~~~~G~v~~~dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (125)
T cd04631           2 DVVTVPPTTPIMEAAKIMVRNGFRRLPVV--DEGTGKLVGIITATDILKYLG-GGEKFNKIKTGNGLEAINEPVRSIMTR   78 (125)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCcccceeE--eCCCCEEEEEEEHHHHHHHhh-ccchhccccccccchhhhcCHHHHhcC
Confidence            48889999999999999999999999999  666 99999999999976543 21110           13478899987


Q ss_pred             CCCeEEEcCCCCHHHHHHHHHhCCC
Q 031190          138 ENKLITVSPDTKVLRAMQLMTGHML  162 (164)
Q Consensus       138 ~~~~~~v~~~~~l~e~~~~m~~~~~  162 (164)
                        +++++++++++.++++.|.+.+.
T Consensus        79 --~~~~v~~~~~l~~~~~~~~~~~~  101 (125)
T cd04631          79 --NVITITPDDSIKDAAELMLEKRV  101 (125)
T ss_pred             --CceEeCCCCcHHHHHHHHHHcCC
Confidence              59999999999999999988765

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain

Probab=99.10  E-value=1.5e-09  Score=71.75  Aligned_cols=85  Identities=15%  Similarity=0.272  Sum_probs=70.6

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEEEEecCCC-CcEEEEEehHHHHHHHHHcCCCCcccccccccccCCCeEEEcCCC
Q 031190           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ-KSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDT  148 (164)
Q Consensus        70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~-~~~vGivt~~dil~~~~~~~~~~~~~~v~~vm~~~~~~~~v~~~~  148 (164)
                      ++.++++++++.+|++.|.+.+++.+||+  +++ |+++|+++..++++... ...  ...++.++|.+   +.++.+++
T Consensus         2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~--~~~~~~~~G~v~~~~l~~~~~-~~~--~~~~~~~~~~~---~~~v~~~~   73 (111)
T cd04590           2 DIVALDADDTLEEILELIAESGHSRFPVY--DGDLDNIIGVVHVKDLLRALA-EGE--EDLDLRDLLRP---PLFVPEST   73 (111)
T ss_pred             ceEEEcCCCCHHHHHHHHhhCCCceEEEE--CCCCceEEEEEEHHHHHHHHH-cCC--CcCCHHHHhcC---CeecCCCC
Confidence            47889999999999999999899999999  777 89999999999976543 221  11457777754   78999999


Q ss_pred             CHHHHHHHHHhCCC
Q 031190          149 KVLRAMQLMTGHML  162 (164)
Q Consensus       149 ~l~e~~~~m~~~~~  162 (164)
                      ++.++++.|.+++.
T Consensus        74 ~l~~~~~~~~~~~~   87 (111)
T cd04590          74 PLDDLLEEMRKERS   87 (111)
T ss_pred             cHHHHHHHHHhcCC
Confidence            99999999998765

CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,

>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]

Probab=99.10  E-value=5e-10  Score=91.59  Aligned_cols=102  Identities=13%  Similarity=0.228  Sum_probs=84.4

Q ss_pred             CcccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCccc
Q 031190           50 GFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKST  129 (164)
Q Consensus        50 ~~~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~  129 (164)
                      .|.+.+|+++|+++++     +.+++.+.++.++.+.+.++++|++||++ ++.+.++|+|+.+|++......+.   ..
T Consensus       202 ~l~~~~v~eiMtPR~~-----i~~l~~~~~~~~~~~~~~~~~~SR~PV~~-~~~D~iiGiv~~Kdll~~~~~~~~---~~  272 (429)
T COG1253         202 DLDDRTVREIMTPRTD-----IVALDLTDTVEELIELILESGHSRIPVYD-GDLDNIIGIVHVKDLLRALLDGQS---DL  272 (429)
T ss_pred             ccCCcEeeeEeeeccc-----EEEEcCCCCHHHHHHHHHhCCCCeeeEEc-CCCCcEEEEEEHHHHHHHHhcCcc---cc
Confidence            3588999999999875     99999999999999999999999999995 477899999999999986653211   12


Q ss_pred             ccccccccCCCeEEEcCCCCHHHHHHHHHhCCCC
Q 031190          130 KVGDIMTEENKLITVSPDTKVLRAMQLMTGHMLL  163 (164)
Q Consensus       130 ~v~~vm~~~~~~~~v~~~~~l~e~~~~m~~~~~~  163 (164)
                      .....+.+   +++|++++++.++++.|++++.|
T Consensus       273 ~~~~~~~~---~~~Vpet~~~~~lL~~~r~~~~h  303 (429)
T COG1253         273 DLRVLVRP---PLFVPETLSLSDLLEEFREERTH  303 (429)
T ss_pred             chhhcccC---CeEecCCCcHHHHHHHHHHhCCe
Confidence            22334445   89999999999999999987653

>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.09  E-value=1.4e-09  Score=73.48  Aligned_cols=89  Identities=18%  Similarity=0.321  Sum_probs=70.0

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEEEEecCCC-CcEEEEEehHHHHHHHHHcCCCCc--------ccccccccccCCC
Q 031190           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ-KSVAGIITERDYLRKIIVQGRSSK--------STKVGDIMTEENK  140 (164)
Q Consensus        70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~-~~~vGivt~~dil~~~~~~~~~~~--------~~~v~~vm~~~~~  140 (164)
                      ++.++.+++++.+|++.|...+++++||+  |++ |+++|+|+..|+++.+........        ...+.++|..  +
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~--d~~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~   77 (123)
T cd04627           2 PFIPVPSTASLFQAIEILGSGGIHRVAVT--EEESGEVIGILSQRRLVEFLWENARSFPGLDPLYPIPLRDLTIGTS--D   77 (123)
T ss_pred             CceecCCCCCHHHHHHHHhhCCcceEEEE--eCCCCcEEEEEEHHHHHHHHHHhHHhccchhhhhhhhhhhcccCcC--C
Confidence            58889999999999999999899999999  676 899999999999765432211000        0112346766  5


Q ss_pred             eEEEcCCCCHHHHHHHHHhCCC
Q 031190          141 LITVSPDTKVLRAMQLMTGHML  162 (164)
Q Consensus       141 ~~~v~~~~~l~e~~~~m~~~~~  162 (164)
                      +.++++++++.+|++.|.+++.
T Consensus        78 ~~~v~~~~~l~~a~~~m~~~~~   99 (123)
T cd04627          78 VISINGDQPLIDALHLMHNEGI   99 (123)
T ss_pred             ceEeCCCCCHHHHHHHHHHcCC
Confidence            8899999999999999998875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.09  E-value=1.2e-09  Score=73.44  Aligned_cols=89  Identities=31%  Similarity=0.424  Sum_probs=73.2

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcC---CC-----CcccccccccccCCCe
Q 031190           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQG---RS-----SKSTKVGDIMTEENKL  141 (164)
Q Consensus        70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~---~~-----~~~~~v~~vm~~~~~~  141 (164)
                      ++.++.+++++.++++.|.+.+++++||+  |++|+++|+++..|+++......   ..     ....++.++|.+  ++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~--d~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~   77 (122)
T cd04635           2 EPVTCTPDDPVSKVWDLMLESGFTGLPVV--QKAGELIGIITRRDIIRAGSVRTSVEDQQRTQTKASPTVEKIMST--PV   77 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCCCcccEE--CCCCcEEEEEEcHHHHhhccccccccchhhhhhhccCcHHHHhcC--CC
Confidence            48899999999999999999999999999  77899999999999976421110   00     134568889987  58


Q ss_pred             EEEcCCCCHHHHHHHHHhCCC
Q 031190          142 ITVSPDTKVLRAMQLMTGHML  162 (164)
Q Consensus       142 ~~v~~~~~l~e~~~~m~~~~~  162 (164)
                      .++++++++.+++..|.+++.
T Consensus        78 ~~v~~~~~l~~~~~~~~~~~~   98 (122)
T cd04635          78 YSVTPDDSIATAVELMLEHDI   98 (122)
T ss_pred             eeECCCCCHHHHHHHHHHcCC
Confidence            999999999999999988775

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=99.08  E-value=2.1e-09  Score=70.28  Aligned_cols=81  Identities=33%  Similarity=0.470  Sum_probs=70.3

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCcccccccccccCCCeEEEcCCCC
Q 031190           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTK  149 (164)
Q Consensus        70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~v~~vm~~~~~~~~v~~~~~  149 (164)
                      ++.++.+++++.++++.|.+++++.+||+  | +++++|+++..+++..       ....++.++|.+  .+.+++++++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~--d-~~~~~Giv~~~~l~~~-------~~~~~~~~~~~~--~~~~v~~~~~   69 (105)
T cd04599           2 DPITIDPLDSVGRAARLMEKHRIGGLPVV--E-DGKLVGIITSRDVRRA-------HPNRLVADAMTR--EVVTISPEAS   69 (105)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEE--E-CCEEEEEEehHHhhcc-------cccCCHHHHccC--CCEEECCCCC
Confidence            47889999999999999998899999999  6 5899999999999652       124568899988  5899999999


Q ss_pred             HHHHHHHHHhCCC
Q 031190          150 VLRAMQLMTGHML  162 (164)
Q Consensus       150 l~e~~~~m~~~~~  162 (164)
                      +.++++.|.+++.
T Consensus        70 l~~~~~~~~~~~~   82 (105)
T cd04599          70 LLEAKRLMEEKKI   82 (105)
T ss_pred             HHHHHHHHHHcCC
Confidence            9999999988875

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.07  E-value=2.2e-09  Score=72.05  Aligned_cols=88  Identities=30%  Similarity=0.407  Sum_probs=72.3

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCC---------CCcccccccccccCCC
Q 031190           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGR---------SSKSTKVGDIMTEENK  140 (164)
Q Consensus        70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~---------~~~~~~v~~vm~~~~~  140 (164)
                      ++.++.+++++.++++.|.+++++.+||+  |+ |+++|+++..+++........         .....++.++|..  +
T Consensus         2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~--~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~   76 (121)
T cd04633           2 PVITVSPDDRVSHARRLMLDHDISRLPVI--EG-GKLVGIVTEKDIADALRSFRPLVRDRHQERRIRNLPVSDIMTR--P   76 (121)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeeEEE--EC-CEEEEEEchHHHHHhhhhhhhcccchhhhhhhhccCHHHHccC--C
Confidence            47899999999999999999999999999  55 999999999999764432110         1124578889987  5


Q ss_pred             eEEEcCCCCHHHHHHHHHhCCC
Q 031190          141 LITVSPDTKVLRAMQLMTGHML  162 (164)
Q Consensus       141 ~~~v~~~~~l~e~~~~m~~~~~  162 (164)
                      +.++++++++.+++..|.+.+.
T Consensus        77 ~~~v~~~~~l~~~~~~~~~~~~   98 (121)
T cd04633          77 VITIEPDTSVSDVASLMLENNI   98 (121)
T ss_pred             ceEECCCCcHHHHHHHHHHcCC
Confidence            8999999999999999988765

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=99.07  E-value=2.9e-09  Score=70.22  Aligned_cols=86  Identities=28%  Similarity=0.343  Sum_probs=71.3

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCcccccccccccCCCeEEEcCCCC
Q 031190           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTK  149 (164)
Q Consensus        70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~v~~vm~~~~~~~~v~~~~~  149 (164)
                      ++..+.+++++.++++.|.+.+++.+||+  |+ ++++|+++..|+++... ... ....++.++|.+  ++.++.++++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~-~~~~G~v~~~dl~~~~~-~~~-~~~~~~~~~~~~--~~~~v~~~~~   74 (111)
T cd04612           2 DVVTVPVDLTVDEVLALMFGERHRGYPVV--DD-GRLVGIVTLADIRRVPA-EGR-EATVLVGDVMTR--DPVTASPDET   74 (111)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCCCcceEe--eC-CeEEEEEEHHHHHHHHh-cCc-ccccCHHHhccC--CCeEECCCCC
Confidence            58899999999999999999889999999  66 99999999999965332 211 112367888988  5999999999


Q ss_pred             HHHHHHHHHhCCC
Q 031190          150 VLRAMQLMTGHML  162 (164)
Q Consensus       150 l~e~~~~m~~~~~  162 (164)
                      +.++++.|.+++.
T Consensus        75 ~~~~~~~~~~~~~   87 (111)
T cd04612          75 LRDALKRMAERDI   87 (111)
T ss_pred             HHHHHHHHHhCCC
Confidence            9999999988764

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an

>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]

Probab=99.07  E-value=6e-10  Score=90.90  Aligned_cols=133  Identities=18%  Similarity=0.261  Sum_probs=107.7

Q ss_pred             CCCChHHHHHHhCccccccccccccccccccchhhh-hcCcccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHc
Q 031190           12 GNIVKSAVLQRIRLVNPMLRPVVSSRFESVSSARME-EHGFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQH   90 (164)
Q Consensus        12 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~   90 (164)
                      .+...++.++.+.-.+...+..+.+.++........ ..++.+.+++.+|+.       .++++.++.|+.+++..++..
T Consensus        89 e~m~~Dd~~~ll~elp~~~~~~lL~~l~~~~r~~v~~~l~y~e~taG~~Mt~-------e~v~l~~~~Tv~~al~~ir~~  161 (451)
T COG2239          89 EELDIDDAADLLDELPDEVRDELLSLLDPEERARVRQLLSYPEDTAGRIMTT-------EFVTLPEDVTVDEALDRIRER  161 (451)
T ss_pred             HhcCcHHHHHHHHhCCHHHHHHHHHhCCHHHHHHHHHhcCCChhhhhcccee-------eeEEeccCcCHHHHHHHHHHh
Confidence            455666666666666666666666666654444444 336788999999999       599999999999999999853


Q ss_pred             -----CCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCcccccccccccCCCeEEEcCCCCHHHHHHHHHhCCC
Q 031190           91 -----NVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTGHML  162 (164)
Q Consensus        91 -----~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~v~~vm~~~~~~~~v~~~~~l~e~~~~m~~~~~  162 (164)
                           ...+++|+  |.+++++|+|+.++++.       ...+.+++++|.++  +.+|.+++..+++.+++.++++
T Consensus       162 ~~~~e~~~~lyVv--D~~~~L~Gvvsl~~Ll~-------a~~~~~i~~im~~~--~~~V~~~~dqeevA~~~~~ydl  227 (451)
T COG2239         162 AEDAETIYYLYVV--DEKGKLLGVVSLRDLLT-------AEPDELLKDLMEDD--VVSVLADDDQEEVARLFEKYDL  227 (451)
T ss_pred             cccccccceEEEE--CCccceEEEeeHHHHhc-------CCcHhHHHHHhccc--ceeecccCCHHHHHHHHHHhCC
Confidence                 46889999  88999999999999975       34678999999994  8999999999999999999986

>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.06  E-value=1.7e-09  Score=73.49  Aligned_cols=89  Identities=24%  Similarity=0.279  Sum_probs=69.7

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHH-----HHHcCCCCcccccccccccCCCeEE-
Q 031190           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRK-----IIVQGRSSKSTKVGDIMTEENKLIT-  143 (164)
Q Consensus        70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~-----~~~~~~~~~~~~v~~vm~~~~~~~~-  143 (164)
                      ++.++.+++++.++++.|.+.+...+||+  |++|+++|+|+..|+++.     +...+....+.++.++|++.  +.. 
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~--d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~v~~im~~~--~~~~   77 (126)
T cd04640           2 KPIVIPADTSIDEALELMIKHGVRLLLVV--DSDDNFIGVITAVDLLGEEPIKRIQEGGISRSELTVADVMTPK--EDLK   77 (126)
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCcEEEEE--cCCCcEEEEEEHHHHhhChhhHHHHHcCCCchheEHHHhcCch--hhhc
Confidence            47889999999999999998899999999  778999999999999642     22111122356799999873  333 


Q ss_pred             -E----cCCCCHHHHHHHHHhCCC
Q 031190          144 -V----SPDTKVLRAMQLMTGHML  162 (164)
Q Consensus       144 -v----~~~~~l~e~~~~m~~~~~  162 (164)
                       +    .+++++.++++.|.+++.
T Consensus        78 ~~~~~~~~~~~l~~~l~~m~~~~~  101 (126)
T cd04640          78 ALDLEELENASVGDVVETLKASGR  101 (126)
T ss_pred             cccHHHhccCcHHHHHHHHHHCCC
Confidence             3    268999999999998875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=99.05  E-value=3.6e-09  Score=70.79  Aligned_cols=88  Identities=33%  Similarity=0.423  Sum_probs=72.1

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCC---------CcccccccccccCCC
Q 031190           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRS---------SKSTKVGDIMTEENK  140 (164)
Q Consensus        70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~---------~~~~~v~~vm~~~~~  140 (164)
                      ++.++.+++++.++++.|.+.+++.+||+  |+ |+++|+++..++++........         ....++.++|.+  +
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~--d~-~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~   76 (122)
T cd04585           2 NPITVTPDTSLMEALKLMKENSIRRLPVV--DR-GKLVGIVTDRDLKLASPSKATTLDIWELYYLLSKIKVSDIMTR--D   76 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHhCCcceeeEe--cC-CeEEEEEeHHHHHHhhhcccccccchhhhhhhcccCHHHhccC--C
Confidence            47889999999999999999999999999  66 8999999999997654321100         013568889988  5


Q ss_pred             eEEEcCCCCHHHHHHHHHhCCC
Q 031190          141 LITVSPDTKVLRAMQLMTGHML  162 (164)
Q Consensus       141 ~~~v~~~~~l~e~~~~m~~~~~  162 (164)
                      +.++++++++.+++..|.+++.
T Consensus        77 ~~~v~~~~~l~~~~~~~~~~~~   98 (122)
T cd04585          77 PITVSPDASVEEAAELMLERKI   98 (122)
T ss_pred             CeEeCCCCcHHHHHHHHHHcCC
Confidence            8999999999999999987764

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i

>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream

Probab=99.03  E-value=3.8e-09  Score=69.26  Aligned_cols=81  Identities=26%  Similarity=0.442  Sum_probs=69.9

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCcccccccccccCCCeEEEcCCCC
Q 031190           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTK  149 (164)
Q Consensus        70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~v~~vm~~~~~~~~v~~~~~  149 (164)
                      ++.++..+.++.++++.|...+.+.+||+  |+ ++++|+++..|++..       ....++.++|..  .+.++.++++
T Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~--d~-~~~~g~v~~~~l~~~-------~~~~~~~~~~~~--~~~~v~~~~~   70 (107)
T cd04610           3 DVITVSPDNTVKDVIKLIKETGHDGFPVV--DN-GKVVGIVSARDLLGK-------DPDETVEEIMSK--DLVVAVPEMD   70 (107)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCCeeeEe--EC-CEEEEEEEHHHhhcc-------CccccHHHhCCC--CCeEECCCCC
Confidence            58899999999999999988888899999  65 899999999999641       134578999988  5889999999


Q ss_pred             HHHHHHHHHhCCC
Q 031190          150 VLRAMQLMTGHML  162 (164)
Q Consensus       150 l~e~~~~m~~~~~  162 (164)
                      +.++++.|.+++.
T Consensus        71 l~~~~~~~~~~~~   83 (107)
T cd04610          71 IMDAARVMFRTGI   83 (107)
T ss_pred             HHHHHHHHHHhCC
Confidence            9999999987764

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea

Probab=99.03  E-value=3.3e-09  Score=69.61  Aligned_cols=79  Identities=19%  Similarity=0.176  Sum_probs=67.9

Q ss_pred             ceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCcccccccccccCCCeEEEcCCCCH
Q 031190           71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKV  150 (164)
Q Consensus        71 ~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~v~~vm~~~~~~~~v~~~~~l  150 (164)
                      -.++.+++++.++++.|.+.+++.+||+  |+ ++++|+|+.+|+++.        ...++.++|.+  .+.++++++++
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~--d~-~~~~G~v~~~~l~~~--------~~~~~~~~~~~--~~~~v~~~~~l   69 (104)
T cd04594           3 DIKVKDYDKVYEAKRIMIENDLLSLPVV--DY-NKFLGAVYLKDIENA--------TYGDVVDYIVR--GIPYVRLTSTA   69 (104)
T ss_pred             ceEECCCCCHHHHHHHHHHcCCcEEEEE--EC-CEEEEEEEHHHHhhh--------cccchhhhhhc--CCcEEcCCCCH
Confidence            3578999999999999999999999999  66 999999999999642        12357788887  58899999999


Q ss_pred             HHHHHHHHhCCC
Q 031190          151 LRAMQLMTGHML  162 (164)
Q Consensus       151 ~e~~~~m~~~~~  162 (164)
                      .+++..|.+++.
T Consensus        70 ~~a~~~~~~~~~   81 (104)
T cd04594          70 EEAWEVMMKNKT   81 (104)
T ss_pred             HHHHHHHHHcCc
Confidence            999999988765

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do

>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.02  E-value=5.4e-09  Score=68.65  Aligned_cols=83  Identities=29%  Similarity=0.396  Sum_probs=70.5

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCcccccccccccCCCeEEEcCCCC
Q 031190           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTK  149 (164)
Q Consensus        70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~v~~vm~~~~~~~~v~~~~~  149 (164)
                      ++.++.++.++.++++.|.+.+++.+||+  +++++++|+++.++++..       ....++.++|..  ++.+++++++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~g~v~~~~l~~~-------~~~~~~~~~~~~--~~~~v~~~~~   70 (106)
T cd04638           2 NVVYVTLPGTRDDVLELLKEYKVSGVPVV--KKSGELVGIITRKDLLRN-------PEEEQLALLMTR--DPPTVSPDDD   70 (106)
T ss_pred             CcEEECCCCCHHHHHHHHHHcCCCeEEEE--cCCCcEEEEEEHHHHHhc-------cccchHHHHhcC--CCceECCCCC
Confidence            47889999999999999999899999999  677999999999999641       123467888887  5889999999


Q ss_pred             HHHHHHHHHhCCCC
Q 031190          150 VLRAMQLMTGHMLL  163 (164)
Q Consensus       150 l~e~~~~m~~~~~~  163 (164)
                      +.+++..|.+++..
T Consensus        71 l~~~~~~~~~~~~~   84 (106)
T cd04638          71 VKEAAKLMVENNIR   84 (106)
T ss_pred             HHHHHHHHHHcCCC
Confidence            99999999887753

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=99.00  E-value=5.6e-09  Score=69.96  Aligned_cols=89  Identities=30%  Similarity=0.343  Sum_probs=73.2

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcC-C-------CCcccccccccccCCCe
Q 031190           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQG-R-------SSKSTKVGDIMTEENKL  141 (164)
Q Consensus        70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~-~-------~~~~~~v~~vm~~~~~~  141 (164)
                      ++.++++++++.+|++.|.+.+++++||+  |++++++|+|+..++++...... .       .....++.++|..  ++
T Consensus         2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~--d~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~   77 (121)
T cd04584           2 DVVTITPTTTIAEALELMREHKIRHLPVV--DEEGRLVGIVTDRDLRDASPSPFTTLSEHELYLLLKMPVKEIMTK--DV   77 (121)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCcccEE--CCCCcEEEEEEHHHHHHHhhhhcccchhhhhhhhcCcCHHHHhhC--CC
Confidence            47899999999999999999999999999  77899999999999865432110 0       1234678899988  58


Q ss_pred             EEEcCCCCHHHHHHHHHhCCC
Q 031190          142 ITVSPDTKVLRAMQLMTGHML  162 (164)
Q Consensus       142 ~~v~~~~~l~e~~~~m~~~~~  162 (164)
                      .+++.++++.++++.|.+++.
T Consensus        78 ~~i~~~~~l~~~~~~~~~~~~   98 (121)
T cd04584          78 ITVHPLDTVEEAALLMREHRI   98 (121)
T ss_pred             eEECCCCcHHHHHHHHHHcCC
Confidence            999999999999999988765

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in

>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]

Probab=99.00  E-value=6.4e-10  Score=88.15  Aligned_cols=124  Identities=23%  Similarity=0.349  Sum_probs=96.7

Q ss_pred             ccccccccccccchhhhhc-------Cc--ccccHHH---HhhhcCCCCCC---CceEecCCCcHHHHHHHHHHcCCCeE
Q 031190           31 RPVVSSRFESVSSARMEEH-------GF--ESTTISD---ILKAKGKGADG---SWLWCTTDDTVYDAVKSMTQHNVGAL   95 (164)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~-------~~--~~~~v~d---im~~~~~~~~~---~~~~v~~~~tl~~a~~~~~~~~~~~i   95 (164)
                      .|+++++||++++..|+..       ++  .+++..+   ...+.+.|++|   ++++++|+.++.++++....++++.+
T Consensus        63 tPlvsSpMDTVtes~MAiaMAl~ggIg~IHhNctpe~QA~~v~~vK~~~~g~~~~p~v~sp~~tvg~v~~~k~~~gF~g~  142 (503)
T KOG2550|consen   63 TPLVSSPMDTVTESEMAIAMALLGGIGFIHHNCTPEDQADMVRRVKNYENGFINNPIVISPTTTVGEVKEAKEKHGFSGI  142 (503)
T ss_pred             CceeccCCcccchhHHHHHHHhcCCceeeecCCCHHHHHHHHHHHHHhhcccccCCcccCCcccchhhhhhccccccccc
Confidence            4899999999999999822       22  5555321   22223445554   78999999999999999999999999


Q ss_pred             EEEecC-CCCcEEEEEehHHHHHHHHHcCCCCcccccccccccCCCeEEEcCCCCHHHHHHHHHhCCC
Q 031190           96 VVVKPG-EQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTGHML  162 (164)
Q Consensus        96 pVv~~d-~~~~~vGivt~~dil~~~~~~~~~~~~~~v~~vm~~~~~~~~v~~~~~l~e~~~~m~~~~~  162 (164)
                      ||.+.+ -..+++|+||.+|+ +++     .....+++++|+++  .++.+.+.+|.++-+++.+++.
T Consensus       143 pvTe~g~~~~KLvG~vtsrdi-~f~-----~~~~~~~~~vmt~~--~~~~~~gi~l~~~neiL~~~kk  202 (503)
T KOG2550|consen  143 PVTEDGKRGSKLVGIITSRDI-QFL-----EDNSLLVSDVMTKN--PVTGAQGITLKEANEILKKIKK  202 (503)
T ss_pred             ccccCCcccceeEEEEehhhh-hhh-----hcccchhhhhcccc--cccccccccHHHHHHHHHhhhc
Confidence            999411 14789999999998 765     23568899999995  6899999999999999977653

>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.00  E-value=8.7e-09  Score=68.56  Aligned_cols=87  Identities=29%  Similarity=0.467  Sum_probs=69.4

Q ss_pred             CceEecCCCcHHHHHHHHHHcC-CCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCcccccccccccCCCeEEEcCC-
Q 031190           70 SWLWCTTDDTVYDAVKSMTQHN-VGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPD-  147 (164)
Q Consensus        70 ~~~~v~~~~tl~~a~~~~~~~~-~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~v~~vm~~~~~~~~v~~~-  147 (164)
                      ++.+++++.++.++++.|..++ ...+||+  + +|+++|+|+..|+++... .+......++.++|..  +++++.++ 
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~-~~~~~G~v~~~dl~~~~~-~~~~~~~~~i~~~~~~--~~~~v~~~~   75 (115)
T cd04620           2 HPLTVTPDTPVADAIALMSQQGDSSCVLVV--E-KGRLLGIFTERDIVRLTA-IGKDLSDLPIGEVMTQ--PVVTLQESE   75 (115)
T ss_pred             CCeEeCCCCcHHHHHHHHHhcCCCceEEEc--C-CCcEEEEEeHHHHHHHHh-cCCCccccCHHHhcCC--CcEEEeccc
Confidence            4788999999999999998888 6677777  5 589999999999976432 2222234678899988  48888887 


Q ss_pred             -CCHHHHHHHHHhCCC
Q 031190          148 -TKVLRAMQLMTGHML  162 (164)
Q Consensus       148 -~~l~e~~~~m~~~~~  162 (164)
                       +++.++++.|.+++.
T Consensus        76 ~~~l~~a~~~~~~~~~   91 (115)
T cd04620          76 IQDIFTALSLFRQHQI   91 (115)
T ss_pred             ccCHHHHHHHHHHhCC
Confidence             789999999998775

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.99  E-value=6.6e-09  Score=72.33  Aligned_cols=88  Identities=32%  Similarity=0.552  Sum_probs=72.6

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCC--C----------------------
Q 031190           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGR--S----------------------  125 (164)
Q Consensus        70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~--~----------------------  125 (164)
                      ++.++.+++++.++++.|.+.+++.+||+  |+ ++++|+++..|+++.+.....  .                      
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv--d~-~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (143)
T cd04634           2 NPITCNADDTISDAARLLRENKISGAPVL--DG-GKLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELPLREFINWEE   78 (143)
T ss_pred             CcEEecCCCCHHHHHHHHHHcCCCcceEe--EC-CeEEEEecHHHHHHHHHhccCccccccCCcceeeeccchheeehHH
Confidence            48899999999999999999999999999  66 899999999999765532210  0                      


Q ss_pred             -------CcccccccccccCCCeEEEcCCCCHHHHHHHHHhCCC
Q 031190          126 -------SKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTGHML  162 (164)
Q Consensus       126 -------~~~~~v~~vm~~~~~~~~v~~~~~l~e~~~~m~~~~~  162 (164)
                             ....++.++|..  ++.++++++++.+++..|.+++.
T Consensus        79 ~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~l~~a~~~~~~~~~  120 (143)
T cd04634          79 TKRALTDAGKMKVRDIMTK--KVITISPDASIEDAAELMVRHKI  120 (143)
T ss_pred             HHHHHHHHhcCCHHHHcCC--CCeEECCCCcHHHHHHHHHHcCC
Confidence                   024567888887  59999999999999999988765

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.99  E-value=5.1e-09  Score=68.11  Aligned_cols=71  Identities=31%  Similarity=0.354  Sum_probs=62.8

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCcccccccccccCCCeEEEcCCCC
Q 031190           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTK  149 (164)
Q Consensus        70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~v~~vm~~~~~~~~v~~~~~  149 (164)
                      ++.++.+++++.+|++.|.+++++.+||+  |++|+++|+|+.+|++..        .         .   +.+++++++
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~--d~~~~~~Giv~~~dl~~~--------~---------~---~~~v~~~~~   59 (96)
T cd04614           2 NVPTVWEETPLPVAVRIMELANVKALPVL--DDDGKLSGIITERDLIAK--------S---------E---VVTATKRTT   59 (96)
T ss_pred             CccEeCCCCcHHHHHHHHHHcCCCeEEEE--CCCCCEEEEEEHHHHhcC--------C---------C---cEEecCCCC
Confidence            58899999999999999999999999999  788999999999999541        0         1   668999999


Q ss_pred             HHHHHHHHHhCCC
Q 031190          150 VLRAMQLMTGHML  162 (164)
Q Consensus       150 l~e~~~~m~~~~~  162 (164)
                      +.+++++|.+++.
T Consensus        60 l~~a~~~m~~~~~   72 (96)
T cd04614          60 VSECAQKMKRNRI   72 (96)
T ss_pred             HHHHHHHHHHhCC
Confidence            9999999998875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE

Probab=98.98  E-value=4.4e-09  Score=69.47  Aligned_cols=78  Identities=28%  Similarity=0.355  Sum_probs=65.9

Q ss_pred             ecCCCcHHHHHHHHHHcC-----CCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCcccccccccccCCCeEEEcCCC
Q 031190           74 CTTDDTVYDAVKSMTQHN-----VGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDT  148 (164)
Q Consensus        74 v~~~~tl~~a~~~~~~~~-----~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~v~~vm~~~~~~~~v~~~~  148 (164)
                      +.+++++.++++.|.+++     +..+||+  |++++++|+|+.+++++.       ....++.++|.+  ++.++.+++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv--d~~~~~~G~v~~~~l~~~-------~~~~~v~~~~~~--~~~~i~~~~   70 (109)
T cd04606           2 VREDWTVGEALEYLRRNADDPETIYYIYVV--DEEGRLLGVVSLRDLLLA-------DPDTPVSDIMDT--DVISVSADD   70 (109)
T ss_pred             ccccCcHHHHHHHHHhccCcccceeEEEEE--CCCCCEEEEEEHHHHhcC-------CCcchHHHHhCC--CCeEEcCCC
Confidence            578999999999998776     4789999  778999999999998641       134678999988  589999999


Q ss_pred             CHHHHHHHHHhCCC
Q 031190          149 KVLRAMQLMTGHML  162 (164)
Q Consensus       149 ~l~e~~~~m~~~~~  162 (164)
                      ++.++++.|.+++.
T Consensus        71 ~~~~~~~~~~~~~~   84 (109)
T cd04606          71 DQEEVARLFEKYDL   84 (109)
T ss_pred             CHHHHHHHHHHcCC
Confidence            99999999987765

MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.98  E-value=7.8e-09  Score=69.52  Aligned_cols=88  Identities=30%  Similarity=0.419  Sum_probs=71.8

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCC--C-------CcccccccccccCCC
Q 031190           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGR--S-------SKSTKVGDIMTEENK  140 (164)
Q Consensus        70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~--~-------~~~~~v~~vm~~~~~  140 (164)
                      ++.++.+++++.++++.|.+.+++++||+  |+ |+++|+++..++++.+.....  .       ....++.++|..  +
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~--d~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~   76 (122)
T cd04637           2 RVVTVEMDDRLEEVREIFEKHKFHHLLVV--ED-NELVGVISDRDYLKAISPFLGTAGETEKDLATLNRRAHQIMTR--D   76 (122)
T ss_pred             CceEeCCCCCHHHHHHHHHhCCCCEEEEE--eC-CeEEEEEEHHHHHHHHHHHhccccchHHHHHHHHhHHHHhhcC--C
Confidence            47889999999999999999999999999  65 899999999999764431100  0       013468899988  5


Q ss_pred             eEEEcCCCCHHHHHHHHHhCCC
Q 031190          141 LITVSPDTKVLRAMQLMTGHML  162 (164)
Q Consensus       141 ~~~v~~~~~l~e~~~~m~~~~~  162 (164)
                      ++++++++++.++++.|.+++.
T Consensus        77 ~~~v~~~~~l~~~~~~~~~~~~   98 (122)
T cd04637          77 PITVSPDTPVDEASKLLLENSI   98 (122)
T ss_pred             CeeeCCCCcHHHHHHHHHHcCC
Confidence            9999999999999999988765

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=98.97  E-value=4.6e-09  Score=70.24  Aligned_cols=87  Identities=21%  Similarity=0.267  Sum_probs=71.0

Q ss_pred             CceEecCCCcHHHHHHHHHHcC-CCeEEEEecCCCCcEEEEEehHHHHHHHHHc--CCCCcccccccccccCCCeEEEcC
Q 031190           70 SWLWCTTDDTVYDAVKSMTQHN-VGALVVVKPGEQKSVAGIITERDYLRKIIVQ--GRSSKSTKVGDIMTEENKLITVSP  146 (164)
Q Consensus        70 ~~~~v~~~~tl~~a~~~~~~~~-~~~ipVv~~d~~~~~vGivt~~dil~~~~~~--~~~~~~~~v~~vm~~~~~~~~v~~  146 (164)
                      ++.++++++++.++++.|...+ ++.+||+  |+ |+++|+|+..|+++.+...  .......++.++|.+  ++.++.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv--d~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~v~~~~~~--~~~~v~~   76 (119)
T cd04598           2 PAPTVSPDTTVNDVLERFERDPDLSALAVV--DD-GRPVGLIMREALMELLSTPYGRALYGKKPVSEVMDP--DPLIVEA   76 (119)
T ss_pred             CcCccCCCCcHHHHHHHHHhCCCccEEEEE--EC-CeeEEEEEHHHHHHHHhchhhHHHHcCCcHHHhcCC--CcEEecC
Confidence            4788999999999999998877 8999999  67 9999999999997543210  000134578999988  5899999


Q ss_pred             CCCHHHHHHHHHhCC
Q 031190          147 DTKVLRAMQLMTGHM  161 (164)
Q Consensus       147 ~~~l~e~~~~m~~~~  161 (164)
                      ++++.+++..|.+++
T Consensus        77 ~~~~~~~~~~~~~~~   91 (119)
T cd04598          77 DTPLEEVSRLATGRD   91 (119)
T ss_pred             CCCHHHHHHHHHcCC
Confidence            999999999998775

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=98.97  E-value=6.5e-09  Score=68.42  Aligned_cols=83  Identities=24%  Similarity=0.373  Sum_probs=69.8

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCcccccccccccCCCeEEEcC-CC
Q 031190           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSP-DT  148 (164)
Q Consensus        70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~v~~vm~~~~~~~~v~~-~~  148 (164)
                      ++..+.+++++.++++.|.+++++.+||+  |++|+++|+++.++++..      .....++.++|..  .+.++.. ++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~--d~~~~~~G~v~~~~l~~~------~~~~~~v~~~~~~--~~~~~~~~~~   72 (110)
T cd04601           3 DPITVSPDATVAEALELMAEYGISGLPVV--DDDGKLVGIVTNRDLRFE------TDLDKPVSEVMTP--ENLLTTVEGT   72 (110)
T ss_pred             CCeEeCCCCcHHHHHHHHHHcCCceEEEE--cCCCEEEEEEEhhHeeec------ccCCCCHHHhccc--CceEEecCCC
Confidence            48899999999999999999999999999  777999999999998531      1134678999977  3666666 99


Q ss_pred             CHHHHHHHHHhCCC
Q 031190          149 KVLRAMQLMTGHML  162 (164)
Q Consensus       149 ~l~e~~~~m~~~~~  162 (164)
                      ++.++++.|.+++.
T Consensus        73 ~l~~~~~~~~~~~~   86 (110)
T cd04601          73 SLEEALELLHEHKI   86 (110)
T ss_pred             CHHHHHHHHHHhCC
Confidence            99999999988875

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.

>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.96  E-value=1.6e-08  Score=66.01  Aligned_cols=88  Identities=39%  Similarity=0.582  Sum_probs=71.8

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCcccccccccccCCCeEEEcCCCC
Q 031190           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTK  149 (164)
Q Consensus        70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~v~~vm~~~~~~~~v~~~~~  149 (164)
                      ++.++.++.++.++.+.|...+.+.+||+  +++++++|+++.+|++....... ......+.++|..  ++.+++++++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~G~v~~~~l~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~   76 (113)
T cd02205           2 DVVTVSPDDTVAEALRLMLEHGISGLPVV--DDDGRLVGIVTERDLLRALAEGG-LDPLVTVGDVMTR--DVVTVSPDTS   76 (113)
T ss_pred             CceEecCCCCHHHHHHHHHhcCCceEEEE--CCCCCEEEEEeHHHHHHHHHhcc-CCccccHHHHhcC--CceecCCCcC
Confidence            47889999999999999999889999999  77799999999999977554221 1112226778887  5889999999


Q ss_pred             HHHHHHHHHhCCC
Q 031190          150 VLRAMQLMTGHML  162 (164)
Q Consensus       150 l~e~~~~m~~~~~  162 (164)
                      +.+++..|.+.+.
T Consensus        77 ~~~~~~~~~~~~~   89 (113)
T cd02205          77 LEEAAELMLEHGI   89 (113)
T ss_pred             HHHHHHHHHHcCC
Confidence            9999999988754

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali

>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]

Probab=98.94  E-value=1e-09  Score=86.22  Aligned_cols=102  Identities=16%  Similarity=0.214  Sum_probs=86.3

Q ss_pred             cccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCcccc
Q 031190           51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTK  130 (164)
Q Consensus        51 ~~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~  130 (164)
                      +.+++|+|+|.++++     +..++.+++.+++++.+.+..+.++||++ |+-+.++|+++.+|+++.+..++ ......
T Consensus       197 Le~~tV~DIMvpR~~-----i~~id~d~~~e~iv~ql~~s~HtRiplyr-~~~DnIiGvlh~r~llr~l~e~~-~~~k~d  269 (423)
T COG4536         197 LENLTVSDIMVPRNE-----IIGIDIDDPWEEIVRQLLHSPHTRIPLYR-DDLDNIIGVLHVRDLLRLLNEKN-EFTKED  269 (423)
T ss_pred             cccceeeeeeccccc-----eeeecCCCCHHHHHHHHhhCCCCceeeec-CChhHhhhhhhHHHHHHHhhccC-cccHhH
Confidence            578999999999885     99999999999999999999999999997 55567999999999988765443 234445


Q ss_pred             cccccccCCCeEEEcCCCCHHHHHHHHHhCCC
Q 031190          131 VGDIMTEENKLITVSPDTKVLRAMQLMTGHML  162 (164)
Q Consensus       131 v~~vm~~~~~~~~v~~~~~l~e~~~~m~~~~~  162 (164)
                      +..+..+   +++|++++++.+.+..|.+++-
T Consensus       270 ~~~~a~e---pyFVPe~Tpl~~QL~~F~~~k~  298 (423)
T COG4536         270 ILRAADE---PYFVPEGTPLSDQLVAFQRNKK  298 (423)
T ss_pred             HHHHhcC---CeecCCCCcHHHHHHHHHHhcc
Confidence            5555566   9999999999999999987764

>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=98.94  E-value=1.3e-08  Score=67.78  Aligned_cols=83  Identities=18%  Similarity=0.216  Sum_probs=68.7

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEEEEecCC---CCcEEEEEehHHHHHHHHHcCCCCcccccccccccCCCeEEEcC
Q 031190           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGE---QKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSP  146 (164)
Q Consensus        70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~---~~~~vGivt~~dil~~~~~~~~~~~~~~v~~vm~~~~~~~~v~~  146 (164)
                      ++.++.+++++.++++.|.+++++.+||+  |+   +|+++|+|+.+|++. ..  .   ...++.++|...  ...+..
T Consensus         3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~--d~~~~~~~~~G~v~~~dl~~-~~--~---~~~~v~~~~~~~--~~~~~~   72 (114)
T cd04602           3 DPSVLSPDHTVADVLEIKEKKGFSGIPVT--EDGKSGGKLLGIVTSRDIDF-LT--D---SETPLSEVMTPR--EVLVVA   72 (114)
T ss_pred             CCeEcCCCCCHHHHHHHHHHcCCCceEEe--eCCCcCCEEEEEEEhHHhhh-hh--c---cCCCHHHhcCCC--ceEEEC
Confidence            47889999999999999998899999999  65   689999999999853 21  1   235689999884  666755


Q ss_pred             --CCCHHHHHHHHHhCCC
Q 031190          147 --DTKVLRAMQLMTGHML  162 (164)
Q Consensus       147 --~~~l~e~~~~m~~~~~  162 (164)
                        ++++.++++.|.+++.
T Consensus        73 ~~~~~l~~~l~~~~~~~~   90 (114)
T cd04602          73 PTGITLEEANEILRESKK   90 (114)
T ss_pred             CCCCCHHHHHHHHHhcCC
Confidence              9999999999988865

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos

>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria

Probab=98.88  E-value=2.8e-08  Score=65.55  Aligned_cols=77  Identities=19%  Similarity=0.183  Sum_probs=66.2

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEEEEecCC---CCcEEEEEehHHHHHHHHHcCCCCcccccccccccCCCeEEEcC
Q 031190           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGE---QKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSP  146 (164)
Q Consensus        70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~---~~~~vGivt~~dil~~~~~~~~~~~~~~v~~vm~~~~~~~~v~~  146 (164)
                      ....+.+++++.++.+.+.+.++..+||+  |+   +|+++|+|+.+|+..... .           +|.+  ++.++++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~--~~~~~~~~~~G~v~~~dl~~~~~-~-----------~m~~--~~~~v~~   66 (105)
T cd04591           3 LVVLLPEGMTVEDLESLLSTTSHNGFPVV--DSTEESPRLVGYILRSQLVVALK-N-----------YIDP--SPFTVSP   66 (105)
T ss_pred             ceEEecccccHHHHHHHHHhCCCCCcceE--cCCCCCCEEEEEEeHHHHHHHHH-H-----------hccC--CCceECC
Confidence            36788999999999999999889999999  66   689999999999965331 1           7877  5889999


Q ss_pred             CCCHHHHHHHHHhCCC
Q 031190          147 DTKVLRAMQLMTGHML  162 (164)
Q Consensus       147 ~~~l~e~~~~m~~~~~  162 (164)
                      ++++.++++.|.+++.
T Consensus        67 ~~~l~~~~~~~~~~~~   82 (105)
T cd04591          67 RTSLEKVHQLFRKLGL   82 (105)
T ss_pred             CCcHHHHHHHHHHcCC
Confidence            9999999999988775

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS

>COG0517 FOG: CBS domain [General function prediction only]

Probab=98.85  E-value=5.2e-08  Score=64.73  Aligned_cols=86  Identities=36%  Similarity=0.555  Sum_probs=72.7

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCcccccccccccCCCeEEEcCCCC
Q 031190           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTK  149 (164)
Q Consensus        70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~v~~vm~~~~~~~~v~~~~~  149 (164)
                      ++.++.++.++.+|...|.++++..+||+  + .++++|++|.+|+++.......  ...++.++|+.  ++.++.++.+
T Consensus         8 ~~~~v~~~~~~~~a~~~m~~~~~~~~~v~--~-~~~l~Giit~~di~~~~~~~~~--~~~~v~~v~~~--~~~~~~~~~~   80 (117)
T COG0517           8 DVITVKPDTSVRDALLLMSENGVSAVPVV--D-DGKLVGIITERDILRALAAGGK--RLLPVKEVMTK--PVVTVDPDTP   80 (117)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEe--e-CCEEEEEEEHHHHHHHHhccCC--ccccHHHhccC--CcEEECCCCC
Confidence            59999999999999999999999999999  3 3489999999999877653321  12268999997  5899999999


Q ss_pred             HHHHHHHHHh-CCC
Q 031190          150 VLRAMQLMTG-HML  162 (164)
Q Consensus       150 l~e~~~~m~~-~~~  162 (164)
                      +.++++.|.. +++
T Consensus        81 ~~~~~~~m~~~~~~   94 (117)
T COG0517          81 LEEALELMVERHKI   94 (117)
T ss_pred             HHHHHHHHHHHcCc
Confidence            9999999988 454

>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

Probab=98.75  E-value=3.6e-08  Score=74.12  Aligned_cols=60  Identities=32%  Similarity=0.545  Sum_probs=56.3

Q ss_pred             ccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHH
Q 031190           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII  120 (164)
Q Consensus        52 ~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~  120 (164)
                      .+.+|+++|.+       ++++++.+..+.||+++|..+++.++.|+  |.+|+++|+||+.|+|..+.
T Consensus       232 ~~~kV~~~M~k-------~vitI~eDe~i~dAir~M~~~nVGRLlV~--ds~gkpvGiITrTDIL~~ia  291 (294)
T COG2524         232 LDAKVSDYMRK-------NVITINEDEDIYDAIRLMNKNNVGRLLVT--DSNGKPVGIITRTDILTRIA  291 (294)
T ss_pred             ccccHHHHhcc-------CCceEcCchhHHHHHHHHHhcCcceEEEE--ccCCcEEEEEehHHHHHHhh
Confidence            56899999998       69999999999999999999999999999  88999999999999998764

>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism

Probab=98.72  E-value=3.8e-08  Score=65.31  Aligned_cols=56  Identities=20%  Similarity=0.313  Sum_probs=50.5

Q ss_pred             cccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHH
Q 031190           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (164)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~  117 (164)
                      ..++.++|..       ++.++.+++++.+|++.|.+++.+.+||+  |++|+++|+||.+|+++
T Consensus        55 ~~~v~~~~~~-------~~~~v~~~~~l~~al~~m~~~~~~~lpVv--d~~~~~~Giit~~di~~  110 (111)
T cd04603          55 TLKVCEVYIV-------PVPIVYCDSKVTDLLRIFRETEPPVVAVV--DKEGKLVGTIYERELLR  110 (111)
T ss_pred             ccChhheeec-------CCcEECCCCcHHHHHHHHHHcCCCeEEEE--cCCCeEEEEEEhHHhhc
Confidence            3568899976       58999999999999999999999999999  77799999999999964

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>TIGR00400 mgtE Mg2+ transporter (mgtE)

Probab=98.70  E-value=6e-08  Score=79.85  Aligned_cols=93  Identities=15%  Similarity=0.182  Sum_probs=76.0

Q ss_pred             ccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCccccc
Q 031190           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKV  131 (164)
Q Consensus        52 ~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~v  131 (164)
                      .+.+++++|.+       ++.++.+++++.+|++.|.+++...+||+  |++|+++|+||.+|+++.+..       ...
T Consensus       193 ~~~~v~~im~~-------~~~~v~~~~~~~eal~~m~~~~~~~lpVV--D~~g~lvGiIt~~Dil~~l~~-------~~~  256 (449)
T TIGR00400       193 PEEILSSIMRS-------SVFSIVGVNDQEEVARLIQKYDFLAVPVV--DNEGRLVGIVTVDDIIDVIQS-------EAT  256 (449)
T ss_pred             CCCcHHHHhCC-------CCeeECCCCCHHHHHHHHHHcCCCEEeEE--cCCCeEEEEEEHHHHHHHHHh-------hhH
Confidence            34579999987       58999999999999999999999999999  888999999999999876642       223


Q ss_pred             ccccccCCCeEEEcCCCCHHHHHHHHHhCCC
Q 031190          132 GDIMTEENKLITVSPDTKVLRAMQLMTGHML  162 (164)
Q Consensus       132 ~~vm~~~~~~~~v~~~~~l~e~~~~m~~~~~  162 (164)
                      +++|+..  ..+..+++.+.+++..|.++++
T Consensus       257 ed~~~~~--gv~~~~~~~l~~~~~~~~~~R~  285 (449)
T TIGR00400       257 EDFYMIA--AVKPLDDSYFDTSILVMAKNRI  285 (449)
T ss_pred             HHHHHhc--CCCCCcchhhhchHHHHHHhcc
Confidence            6788773  4444457788888888888776

This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.

>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]

Probab=98.68  E-value=4.5e-08  Score=72.81  Aligned_cols=101  Identities=12%  Similarity=0.256  Sum_probs=85.2

Q ss_pred             cccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCcccc
Q 031190           51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTK  130 (164)
Q Consensus        51 ~~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~  130 (164)
                      +.+..|+|+|.++.+     ..++..+.++.+.+..+.+..+|++||+. ++.+.+.|++..+|++.++...   .....
T Consensus        64 iadl~vrDiMIPRSQ-----M~~l~~~~~l~~~l~~iiesaHSRfPVi~-edkD~v~GIL~AKDLL~~~~~~---~~~F~  134 (293)
T COG4535          64 IADLRVRDIMIPRSQ-----MITLKRNQTLDECLDVIIESAHSRFPVIS-EDKDHVEGILLAKDLLPFMRSD---AEPFD  134 (293)
T ss_pred             HHHhhHhhhcccHHH-----heeccccCCHHHHHHHHHHhccccCCccc-CCchhhhhhhhHHHHHHHhcCC---ccccc
Confidence            467899999999875     89999999999999999999999999994 4567899999999999875321   12356


Q ss_pred             cccccccCCCeEEEcCCCCHHHHHHHHHhCCCC
Q 031190          131 VGDIMTEENKLITVSPDTKVLRAMQLMTGHMLL  163 (164)
Q Consensus       131 v~~vm~~~~~~~~v~~~~~l~e~~~~m~~~~~~  163 (164)
                      +.++.++   .++|+++-.+...++-|..++.|
T Consensus       135 i~~lLRP---av~VPESKrvd~lLkeFR~~RnH  164 (293)
T COG4535         135 IKELLRP---AVVVPESKRVDRLLKEFRSQRNH  164 (293)
T ss_pred             HHHhccc---ceecccchhHHHHHHHHHhhcCc
Confidence            7888888   89999999999999988776654

>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional

Probab=98.67  E-value=2.9e-07  Score=77.50  Aligned_cols=58  Identities=22%  Similarity=0.323  Sum_probs=53.4

Q ss_pred             ccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHH
Q 031190           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII  120 (164)
Q Consensus        54 ~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~  120 (164)
                      .+++++|..       ++.++++++++.+|++.|.+++++.+||+  |++|+++|+|+.+|+.+.+.
T Consensus        68 ~~V~dim~~-------~~~~v~~~~~l~~a~~~m~~~~~~~lpVv--d~~g~l~Givt~~di~~~~~  125 (546)
T PRK14869         68 PQVRDLEID-------KPVTVSPDTSLKEAWNLMDENNVKTLPVV--DEEGKLLGLVSLSDLARAYM  125 (546)
T ss_pred             CcHHHhcCC-------CCcEECCCCcHHHHHHHHHHcCCCEEEEE--cCCCEEEEEEEHHHHHHHHH
Confidence            689999987       59999999999999999999999999999  77899999999999987554

>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.66  E-value=1.2e-07  Score=63.20  Aligned_cols=57  Identities=21%  Similarity=0.401  Sum_probs=51.5

Q ss_pred             ccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHH
Q 031190           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (164)
Q Consensus        52 ~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~  117 (164)
                      ...++.++|..       ++.++.+++++.+|++.|.+++...+||+  |++|+++|+|+.+|+++
T Consensus        57 ~~~~v~~~~~~-------~~~~v~~~~~l~~a~~~m~~~~~~~lpVv--d~~~~~~Gvi~~~dl~~  113 (114)
T cd04619          57 CTAPVENVMTR-------AVVSCRPGDLLHDVWQVMKQRGLKNIPVV--DENARPLGVLNARDALK  113 (114)
T ss_pred             ccCCHHHHhcC-------CCeeECCCCCHHHHHHHHHHcCCCeEEEE--CCCCcEEEEEEhHhhcc
Confidence            34679999987       59999999999999999999999999999  77789999999999853

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=98.61  E-value=1.4e-07  Score=63.20  Aligned_cols=54  Identities=28%  Similarity=0.418  Sum_probs=50.0

Q ss_pred             ccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHH
Q 031190           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYL  116 (164)
Q Consensus        54 ~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil  116 (164)
                      .+++++|..       ++.++.+++++.++++.|.+.++..+||+  |++|+++|+|+.+|+.
T Consensus        58 ~~v~dim~~-------~~~~v~~~~~l~~a~~~~~~~~~~~lpVv--d~~~~l~Givt~~dl~  111 (113)
T cd04597          58 PRVRDVINR-------KPVTARPNDPLREALNLMHEHNIRTLPVV--DDDGTPAGIITLLDLA  111 (113)
T ss_pred             hhHHHhcCC-------CCCEECCcCcHHHHHHHHHHcCCCEEEEE--CCCCeEEEEEEHHHhh
Confidence            679999987       58999999999999999999999999999  7889999999999984

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream

Probab=98.51  E-value=5.7e-07  Score=59.54  Aligned_cols=56  Identities=16%  Similarity=0.293  Sum_probs=50.5

Q ss_pred             cccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHH
Q 031190           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (164)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~  117 (164)
                      ...+.++|..       .+.++.+++++.++++.|.+++.+.+||+  +++|+++|+||.+|++.
T Consensus        57 ~~~v~~~~~~-------~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv--~~~~~~~Gvit~~di~~  112 (113)
T cd04607          57 DDPVSEVMNR-------NPITAKVGSSREEILALMRERSIRHLPIL--DEEGRVVGLATLDDLLS  112 (113)
T ss_pred             CCCHHHhhcC-------CCEEEcCCCCHHHHHHHHHHCCCCEEEEE--CCCCCEEEEEEhHHhcc
Confidence            3578999976       58999999999999999999999999999  77899999999999853

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

Probab=98.51  E-value=4.4e-07  Score=60.95  Aligned_cols=56  Identities=21%  Similarity=0.368  Sum_probs=50.9

Q ss_pred             cccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHH
Q 031190           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (164)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~  117 (164)
                      ..++.++|..       ++.++.+++++.++++.|..++.+.+||+  |++|+++|+|+..|++.
T Consensus        68 ~~~i~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv--~~~g~~~Gvit~~di~~  123 (124)
T cd04600          68 PETVGDIMSP-------PVVTVRPDTPIAELVPLLADGGHHHVPVV--DEDRRLVGIVTQTDLIA  123 (124)
T ss_pred             cccHHHhccC-------CCeeeCCCCcHHHHHHHHHhcCCCceeEE--cCCCCEEEEEEhHHhhc
Confidence            4578999977       59999999999999999999999999999  77899999999999864

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.50  E-value=4.8e-07  Score=59.80  Aligned_cols=58  Identities=24%  Similarity=0.462  Sum_probs=51.8

Q ss_pred             cccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHH
Q 031190           51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (164)
Q Consensus        51 ~~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~  117 (164)
                      +...++.++|..       ++.++.+++++.++++.|.+++...+||+  +++|+++|+|+..|+++
T Consensus        55 ~~~~~i~~~~~~-------~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv--d~~g~~~Gvvt~~dl~~  112 (113)
T cd04615          55 LKDAKVREVMNS-------PVITIDANDSIAKARWLMSNNNISRLPVL--DDKGKVGGIVTEDDILR  112 (113)
T ss_pred             hcCCcHHHhccC-------CceEECCCCcHHHHHHHHHHcCCCeeeEE--CCCCeEEEEEEHHHhhc
Confidence            355789999976       59999999999999999999999999999  77889999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional

Probab=98.50  E-value=1.2e-06  Score=73.77  Aligned_cols=118  Identities=19%  Similarity=0.294  Sum_probs=81.4

Q ss_pred             cccccccccccchhhhhcCcccccHHHHhh-hcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEE
Q 031190           32 PVVSSRFESVSSARMEEHGFESTTISDILK-AKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGII  110 (164)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~v~dim~-~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGiv  110 (164)
                      |.+...+++....+...   ...+|+++|. .       ++.++++++++.++.+.|.++++..+||+  |++|+++|+|
T Consensus       227 ~ii~t~~dt~~t~~~l~---~~~~V~~iM~~~-------~~~~~~~~~~~~~~~~~m~~~~~~~~PVv--d~~g~lvGii  294 (546)
T PRK14869        227 TVISTPYDTFTTARLIN---QSIPVSYIMTTE-------DLVTFSKDDYLEDVKEVMLKSRYRSYPVV--DEDGKVVGVI  294 (546)
T ss_pred             eEEEecccHHHHHHHhh---cCCCHHHhccCC-------CcEEECCCCcHHHHHHHHHhcCCCceEEE--cCCCCEEEEE
Confidence            44555555444333332   3578999998 5       59999999999999999999999999999  8889999999


Q ss_pred             ehHHHHHHHHHc------C---C---CC---------cccccccccccCCCeEEE---cCCCCHHHHHHHHHhCCCC
Q 031190          111 TERDYLRKIIVQ------G---R---SS---------KSTKVGDIMTEENKLITV---SPDTKVLRAMQLMTGHMLL  163 (164)
Q Consensus       111 t~~dil~~~~~~------~---~---~~---------~~~~v~~vm~~~~~~~~v---~~~~~l~e~~~~m~~~~~~  163 (164)
                      |.+|+++....+      .   .   ..         +.-++.++|+..  ++.+   +...+...+.++|.+.++.
T Consensus       295 t~~dl~~~~~~~~iLVD~~e~~q~~~~~~~~~i~~iiDHH~~~~~~~~~--pi~~~~~~~gst~tiv~~~~~~~~i~  369 (546)
T PRK14869        295 SRYHLLSPVRKKVILVDHNEKSQAVEGIEEAEILEIIDHHRLGDIQTSN--PIFFRNEPVGSTSTIVARMYRENGIE  369 (546)
T ss_pred             EHHHhhccccCceEEEcCccccccccchhhceEEEEecCCccCCCCCCC--CcEEEeeeeeeHHHHHHHHHHHcCCC
Confidence            999997633210      0   0   00         011345666663  4433   3466666778888777653

>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.49  E-value=3.2e-07  Score=59.84  Aligned_cols=56  Identities=20%  Similarity=0.280  Sum_probs=46.6

Q ss_pred             ccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCC-CcEEEEEehHHHHH
Q 031190           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ-KSVAGIITERDYLR  117 (164)
Q Consensus        54 ~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~-~~~vGivt~~dil~  117 (164)
                      .+..|+....      .+.++.+++++.+|++.|.+++..++||+  |++ |+++|+||.+|++.
T Consensus        41 vt~~Dl~~~~------~~~~v~~~~~l~~a~~~m~~~~~~~lpVv--d~~~~~~~giit~~d~~~   97 (98)
T cd04618          41 LTITDFILIL------RLVSIHPERSLFDAALLLLKNKIHRLPVI--DPSTGTGLYILTSRRILK   97 (98)
T ss_pred             EEHHHHhhhe------eeEEeCCCCcHHHHHHHHHHCCCCEeeEE--ECCCCCceEEeehhhhhc
Confidence            4556665441      16889999999999999999999999999  565 89999999999853

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>PRK15094 magnesium/cobalt efflux protein CorC; Provisional

Probab=98.48  E-value=1.5e-06  Score=67.81  Aligned_cols=94  Identities=15%  Similarity=0.142  Sum_probs=71.0

Q ss_pred             ccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCccccc-c
Q 031190           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKV-G  132 (164)
Q Consensus        54 ~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~v-~  132 (164)
                      ..+.++|.+        +.++++++++.++++.|.+++.+.+||+  |+.|.++|+||..|+++.+.+.-....+..- .
T Consensus       133 ~~l~~l~r~--------~~~V~e~~~l~~~L~~m~~~~~~~a~Vv--De~G~viGiVTleDIle~ivGei~de~d~~~~~  202 (292)
T PRK15094        133 FSMDKVLRQ--------AVVVPESKRVDRMLKEFRSQRYHMAIVI--DEFGGVSGLVTIEDILELIVGEIEDEYDEEDDI  202 (292)
T ss_pred             CCHHHHcCC--------CcCcCCCCcHHHHHHHHHhcCCEEEEEE--eCCCCEEEEeEHHHHHHHHhCCCcccccccccc
Confidence            347777765        6799999999999999999999999999  7888999999999999988754111111111 1


Q ss_pred             cccccCCCeEEEcCCCCHHHHHHHH
Q 031190          133 DIMTEENKLITVSPDTKVLRAMQLM  157 (164)
Q Consensus       133 ~vm~~~~~~~~v~~~~~l~e~~~~m  157 (164)
                      ++-...+.-+.|+..+++.++.+.+
T Consensus       203 ~i~~~~~~~~~v~G~~~l~dl~~~l  227 (292)
T PRK15094        203 DFRQLSRHTWTVRALASIEDFNEAF  227 (292)
T ss_pred             ccEEeCCCeEEEEeccCHHHHHHHh
Confidence            1222122478899999999998876

>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.47  E-value=6.9e-07  Score=59.27  Aligned_cols=56  Identities=16%  Similarity=0.347  Sum_probs=49.5

Q ss_pred             cccHHHHhhhcCCCCCCCceEecCC--CcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHH
Q 031190           53 STTISDILKAKGKGADGSWLWCTTD--DTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (164)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~--~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~  117 (164)
                      +.++.++|..       ++.++.++  +++.++++.|.+++...+||+  |++|+++|+||.+|+++
T Consensus        57 ~~~i~~~~~~-------~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVv--d~~~~~~Gvit~~dl~~  114 (115)
T cd04620          57 DLPIGEVMTQ-------PVVTLQESEIQDIFTALSLFRQHQIRHLPVL--DDQGQLIGLVTAESIRQ  114 (115)
T ss_pred             ccCHHHhcCC-------CcEEEecccccCHHHHHHHHHHhCCceEEEE--cCCCCEEEEEEhHHhhc
Confidence            4678899976       58888887  789999999999999999999  77899999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

Probab=98.47  E-value=8.3e-07  Score=58.57  Aligned_cols=56  Identities=21%  Similarity=0.336  Sum_probs=50.6

Q ss_pred             cccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHH
Q 031190           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (164)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~  117 (164)
                      ..++.++|.+       ++.++.+++++.++++.|..++...+||+  +++++++|+|+..|+++
T Consensus        58 ~~~v~~~~~~-------~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv--~~~~~~iG~it~~di~~  113 (114)
T cd04604          58 TLPVADVMTR-------NPKTIDPDALAAEALELMEENKITALPVV--DDNGRPVGVLHIHDLLR  113 (114)
T ss_pred             cCCHHHhhcc-------CCeEECCCCcHHHHHHHHHHcCCCEEEEE--CCCCCEEEEEEHHHhhc
Confidence            3579999987       58999999999999999999999999999  77899999999999864

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct

>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=98.47  E-value=8.6e-07  Score=58.26  Aligned_cols=56  Identities=25%  Similarity=0.375  Sum_probs=50.8

Q ss_pred             cccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHH
Q 031190           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (164)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~  117 (164)
                      ...+.++|..       ++.++.+++++.++++.|..++...+||+  +++|+++|+++..|+++
T Consensus        52 ~~~v~~~~~~-------~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv--~~~~~~~G~it~~di~~  107 (108)
T cd04596          52 DTTIEKVMTK-------NPITVNPKTSVASVAHMMIWEGIEMLPVV--DDNKKLLGIISRQDVLK  107 (108)
T ss_pred             cccHHHHhcC-------CCeEECCCCCHHHHHHHHHHcCCCeeeEE--cCCCCEEEEEEHHHhhc
Confidence            4579999976       59999999999999999999999999999  77899999999999853

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream

Probab=98.46  E-value=8e-07  Score=58.06  Aligned_cols=56  Identities=27%  Similarity=0.472  Sum_probs=50.2

Q ss_pred             cccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHH
Q 031190           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (164)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~  117 (164)
                      ...++++|..       ++.++.+++++.++++.|.+++...+||+  +++|+++|+|+..|+++
T Consensus        51 ~~~~~~~~~~-------~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv--~~~g~~~Gvi~~~di~~  106 (107)
T cd04610          51 DETVEEIMSK-------DLVVAVPEMDIMDAARVMFRTGISKLPVV--DENNNLVGIITNTDVIR  106 (107)
T ss_pred             cccHHHhCCC-------CCeEECCCCCHHHHHHHHHHhCCCeEeEE--CCCCeEEEEEEHHHhhc
Confidence            3568899976       58999999999999999999999999999  77899999999999864

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=98.46  E-value=7.9e-07  Score=59.25  Aligned_cols=56  Identities=32%  Similarity=0.479  Sum_probs=50.7

Q ss_pred             cccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHH
Q 031190           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (164)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~  117 (164)
                      ..++.++|.+       ++.++.+++++.++++.|.+.+.+.+||+  +++|+++|+||..|+++
T Consensus        66 ~~~~~~~~~~-------~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv--~~~~~~~Gvvt~~di~~  121 (122)
T cd04585          66 KIKVSDIMTR-------DPITVSPDASVEEAAELMLERKISGLPVV--DDQGRLVGIITESDLFR  121 (122)
T ss_pred             ccCHHHhccC-------CCeEeCCCCcHHHHHHHHHHcCCCceeEE--CCCCcEEEEEEHHHhhh
Confidence            4678899977       59999999999999999999999999999  77789999999999964

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i

>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.45  E-value=6.3e-07  Score=59.97  Aligned_cols=59  Identities=24%  Similarity=0.333  Sum_probs=50.3

Q ss_pred             cccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCC---CcEEEEEehHHHH
Q 031190           51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ---KSVAGIITERDYL  116 (164)
Q Consensus        51 ~~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~---~~~vGivt~~dil  116 (164)
                      +...+++++|....     ++.++.+++++.+++++|.+++...+||+  |++   |+++|+||..|++
T Consensus        55 ~~~~~~~~~~~~~~-----~~~~v~~~~~l~~~~~~~~~~~~~~lpVv--d~~~~~~~l~Gvit~~~l~  116 (118)
T cd04617          55 LQKVPVGVIMTRMP-----NITTTTPEESVLEAAKKLIEHQVDSLPVV--EKVDEGLEVIGRITKTNIT  116 (118)
T ss_pred             ccCCCHHHHhCCCC-----CcEEECCCCcHHHHHHHHHHcCCCEeeEE--eCCCccceEEEEEEhhhee
Confidence            34678889997311     38899999999999999999999999999  555   6999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.44  E-value=9.4e-07  Score=58.65  Aligned_cols=56  Identities=18%  Similarity=0.292  Sum_probs=50.1

Q ss_pred             ccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHH
Q 031190           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (164)
Q Consensus        52 ~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~  117 (164)
                      ...++.++|..       ++.++++++++.++++.|.+.+...+||+  |+ |+++|+|+..|+++
T Consensus        58 ~~~~v~~~~~~-------~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv--d~-~~~~Gvi~~~dl~~  113 (114)
T cd04630          58 DRVNVYEIMTK-------PLISVSPDMDIKYCARLMERTNIRRAPVV--EN-NELIGIISLTDIFL  113 (114)
T ss_pred             CccCHHHHhcC-------CCeeECCCCCHHHHHHHHHHcCCCEeeEe--eC-CEEEEEEEHHHhhc
Confidence            34679999976       59999999999999999999999999999  65 89999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.43  E-value=6.9e-07  Score=60.16  Aligned_cols=44  Identities=23%  Similarity=0.335  Sum_probs=42.0

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHH
Q 031190           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDY  115 (164)
Q Consensus        70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~di  115 (164)
                      ++.++.+++++.+|++.|.+++.+.+||+  |++++++|+||.+|+
T Consensus        77 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVv--d~~~~~vGiit~~di  120 (123)
T cd04627          77 DVISINGDQPLIDALHLMHNEGISSVAVV--DNQGNLIGNISVTDV  120 (123)
T ss_pred             CceEeCCCCCHHHHHHHHHHcCCceEEEE--CCCCcEEEEEeHHHh
Confidence            58999999999999999999999999999  778999999999998

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.43  E-value=1.1e-06  Score=58.02  Aligned_cols=56  Identities=20%  Similarity=0.324  Sum_probs=49.7

Q ss_pred             ccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHH
Q 031190           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (164)
Q Consensus        52 ~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~  117 (164)
                      ...++.++|..       ++.++.+++++.++++.|.+++...+||+  + +|+++|+||.+|+++
T Consensus        56 ~~~~v~~~~~~-------~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv--~-~~~~~Gvvt~~dl~~  111 (112)
T cd04625          56 LDTTVRAIMNP-------EPIVASPDDSIDEVRRLMVERHLRYLPVL--D-GGTLLGVISFHDVAK  111 (112)
T ss_pred             hcCCHHHHhCC-------CCeEECCCCCHHHHHHHHHHcCCCeeeEE--E-CCEEEEEEEHHHhhc
Confidence            34679999976       58999999999999999999999999999  5 589999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE

Probab=98.43  E-value=1.3e-06  Score=57.52  Aligned_cols=56  Identities=29%  Similarity=0.406  Sum_probs=50.8

Q ss_pred             cccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHH
Q 031190           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (164)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~  117 (164)
                      +.++.++|..       ++.++.+++++.++++.|..++...+||+  |++++++|+|+..|+++
T Consensus        52 ~~~v~~~~~~-------~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv--~~~~~~~Gvit~~dll~  107 (109)
T cd04606          52 DTPVSDIMDT-------DVISVSADDDQEEVARLFEKYDLLALPVV--DEEGRLVGIITVDDVID  107 (109)
T ss_pred             cchHHHHhCC-------CCeEEcCCCCHHHHHHHHHHcCCceeeeE--CCCCcEEEEEEhHHhhh
Confidence            4578899876       58999999999999999999999999999  77899999999999975

MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.41  E-value=1.6e-06  Score=58.08  Aligned_cols=57  Identities=30%  Similarity=0.571  Sum_probs=50.9

Q ss_pred             ccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHH
Q 031190           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (164)
Q Consensus        52 ~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~  117 (164)
                      ...++.++|..       ++.++.+++++.++++.|.+.+.+.+||+  +++|+++|++|..|+++
T Consensus        65 ~~~~v~~~~~~-------~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv--~~~~~~~Gvit~~dl~~  121 (122)
T cd04803          65 RDVPVAEVMKT-------DVLTVTPDTPLREAAEIMVENKIGCLPVV--DDKGTLVGIITRSDFLR  121 (122)
T ss_pred             cCcCHHHhhCC-------CCeEeCCCCcHHHHHHHHHHcCCCeEEEE--cCCCCEEEEEEHHHhhc
Confidence            35678899976       59999999999999999999999999999  67789999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=98.41  E-value=1.3e-06  Score=56.95  Aligned_cols=54  Identities=20%  Similarity=0.206  Sum_probs=48.5

Q ss_pred             cHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHH
Q 031190           55 TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (164)
Q Consensus        55 ~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~  117 (164)
                      +++++|.+       .+..+.+++++.++++.|.+++.+.+||+  |++++++|+|+.+++++
T Consensus        52 ~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv--~~~~~~~Gvi~~~~l~~  105 (106)
T cd04582          52 CCGDHAEP-------FKVTVSVDDDLRIVLSRMFAHDMSWLPCV--DEDGRYVGEVTQRSIAD  105 (106)
T ss_pred             chhhhccc-------CCEEECCCCCHHHHHHHHHHCCCCeeeEE--CCCCcEEEEEEHHHhhc
Confidence            57888876       47889999999999999999999999999  77889999999999864

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi

>TIGR03520 GldE gliding motility-associated protein GldE

Probab=98.40  E-value=3.4e-06  Score=68.75  Aligned_cols=86  Identities=12%  Similarity=0.171  Sum_probs=67.3

Q ss_pred             ceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCccccccccccc-CCCeEEEcCCCC
Q 031190           71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTE-ENKLITVSPDTK  149 (164)
Q Consensus        71 ~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~v~~vm~~-~~~~~~v~~~~~  149 (164)
                      +.++++++++.++++.|++++.+..+|+  |+.|..+|+||..|+++.+.+.-....+ .-.+.+.+ ++..+.++..++
T Consensus       264 ~~~Vpe~~~l~~ll~~m~~~~~~~aiVv--DE~G~~~GiVT~eDileeivgei~de~d-~~~~~i~~~~~~~~~v~G~~~  340 (408)
T TIGR03520       264 PYFVPENKKLDDLLRDFQEKKNHLAIVV--DEYGGTSGLVTLEDIIEEIVGDISDEFD-DEDLIYSKIDDNNYVFEGKTS  340 (408)
T ss_pred             CeEeCCCCcHHHHHHHHHhcCceEEEEE--cCCCCEEEEEEHHHHHHHHhCCCCCcCC-cCccceEEeCCCeEEEEeccC
Confidence            8899999999999999999999999999  8889999999999999988654211111 11222322 125788999999


Q ss_pred             HHHHHHHHHh
Q 031190          150 VLRAMQLMTG  159 (164)
Q Consensus       150 l~e~~~~m~~  159 (164)
                      +.++.+.|.-
T Consensus       341 l~~l~~~l~~  350 (408)
T TIGR03520       341 LKDFYKILKL  350 (408)
T ss_pred             HHHHHHHhCC
Confidence            9999988843

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.

>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.40  E-value=1.4e-06  Score=58.26  Aligned_cols=57  Identities=33%  Similarity=0.550  Sum_probs=50.9

Q ss_pred             ccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHH
Q 031190           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (164)
Q Consensus        52 ~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~  117 (164)
                      ...++.++|..       ++.++.+++++.++++.|.+++.+.+||+  +++|+++|++|..|+++
T Consensus        65 ~~~~~~~~~~~-------~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv--d~~g~~~Gvit~~dl~~  121 (122)
T cd04635          65 ASPTVEKIMST-------PVYSVTPDDSIATAVELMLEHDIGRLPVV--NEKDQLVGIVDRHDVLK  121 (122)
T ss_pred             ccCcHHHHhcC-------CCeeECCCCCHHHHHHHHHHcCCCeeeEE--cCCCcEEEEEEhHHhhc
Confidence            35678889876       59999999999999999999999999999  77799999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.40  E-value=1.4e-06  Score=58.54  Aligned_cols=56  Identities=34%  Similarity=0.557  Sum_probs=50.2

Q ss_pred             cccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHH
Q 031190           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (164)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~  117 (164)
                      ..++.++|..       ++.++.+++++.++++.|.+.+...+||+  +++|+++|+||..|+++
T Consensus        69 ~~~~~~~~~~-------~~~~v~~~~~l~~~~~~~~~~~~~~~~V~--~~~~~~~Gvit~~di~~  124 (125)
T cd04631          69 NEPVRSIMTR-------NVITITPDDSIKDAAELMLEKRVGGLPVV--DDDGKLVGIVTERDLLK  124 (125)
T ss_pred             hcCHHHHhcC-------CceEeCCCCcHHHHHHHHHHcCCceEEEE--cCCCcEEEEEEHHHhhc
Confidence            3578899876       59999999999999999999999999999  66789999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

Probab=98.40  E-value=1.6e-06  Score=56.97  Aligned_cols=57  Identities=26%  Similarity=0.533  Sum_probs=50.9

Q ss_pred             ccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHH
Q 031190           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (164)
Q Consensus        52 ~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~  117 (164)
                      ....++++|..       ++..+.+++++.++++.|.+.+...+||+  |++|+++|+|+.+|+++
T Consensus        54 ~~~~v~~~~~~-------~~~~~~~~~~l~~~l~~~~~~~~~~~~Vv--~~~~~~~Gvi~~~di~~  110 (111)
T cd04611          54 LQTPVGEVMSS-------PLLTVPADTSLYDARQLMREHGIRHLVVV--DDDGELLGLLSQTDLLQ  110 (111)
T ss_pred             CCcCHHHhcCC-------CceEECCCCCHHHHHHHHHHcCCeEEEEE--CCCCcEEEEEEhHHhhc
Confidence            45678999876       58999999999999999999999999999  77799999999999853

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB

>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=98.39  E-value=1.5e-06  Score=56.91  Aligned_cols=55  Identities=18%  Similarity=0.292  Sum_probs=49.7

Q ss_pred             ccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHH
Q 031190           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (164)
Q Consensus        54 ~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~  117 (164)
                      ..+.++|..       .+.++.+++++.++++.|.+.+.+++||+  +++|+++|++|.+|+++
T Consensus        54 ~~v~~~~~~-------~~~~v~~~~~~~~~~~~~~~~~~~~~~vv--~~~g~~~Gvit~~~l~~  108 (109)
T cd04583          54 KSLEDIMLE-------DVFTVQPDASLRDVLGLVLKRGPKYVPVV--DEDGKLVGLITRSSLVD  108 (109)
T ss_pred             CcHhHhhcC-------CceEECCCCcHHHHHHHHHHcCCceeeEE--CCCCeEEEEEehHHhhc
Confidence            468888876       59999999999999999999999999999  77889999999999853

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz

>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=98.38  E-value=1.2e-06  Score=57.70  Aligned_cols=55  Identities=22%  Similarity=0.323  Sum_probs=49.8

Q ss_pred             ccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHH
Q 031190           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (164)
Q Consensus        54 ~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~  117 (164)
                      .++.++|.+       ++.++.+++++.++++.|.+++...+||+  +++++++|+|+.+|++.
T Consensus        58 ~~v~~i~~~-------~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv--~~~~~~~Gvvs~~dl~~  112 (113)
T cd04587          58 TLVERVMTP-------NPVCATSDTPVLEALHLMVQGKFRHLPVV--DKSGQVVGLLDVTKLTH  112 (113)
T ss_pred             CCHHHhcCC-------CCeEEcCCCCHHHHHHHHHHcCCCcccEE--CCCCCEEEEEEHHHhcc
Confidence            578999976       58999999999999999999999999999  77799999999999853

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai

>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.38  E-value=1.5e-06  Score=57.14  Aligned_cols=55  Identities=15%  Similarity=0.239  Sum_probs=49.7

Q ss_pred             cccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHH
Q 031190           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYL  116 (164)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil  116 (164)
                      ...+.++|..       ++..+.+++++.++++.|.+++...+||+  +++|+++|++|..|+.
T Consensus        55 ~~~v~~~~~~-------~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv--~~~~~~~G~it~~dl~  109 (111)
T cd04639          55 DAPVRGVMRR-------DFPTVSPSATLDAVLRLMQQGGAPAVPVV--DGSGRLVGLVTLENVG  109 (111)
T ss_pred             CCcHHHHhcC-------CCcEECCCCcHHHHHHHHHhcCCceeeEE--cCCCCEEEEEEHHHhh
Confidence            3578899976       59999999999999999999999999999  7678999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.38  E-value=1.6e-06  Score=57.01  Aligned_cols=55  Identities=31%  Similarity=0.430  Sum_probs=49.5

Q ss_pred             cccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHH
Q 031190           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (164)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~  117 (164)
                      ..++.++|..       ++.++.+++++.++++.|.+.+.+.+||+  ++ |+++|+|+..|+++
T Consensus        58 ~~~~~~~~~~-------~~~~v~~~~~~~~~l~~~~~~~~~~~~Vv--~~-~~~~Gvit~~di~~  112 (113)
T cd04623          58 DTPVSEIMTR-------NVITVTPDDTVDEAMALMTERRFRHLPVV--DG-GKLVGIVSIGDVVK  112 (113)
T ss_pred             ccCHHHhcCC-------CcEEECCCCcHHHHHHHHHHcCCCEeEEE--eC-CEEEEEEEHHHhhc
Confidence            4689999976       59999999999999999999999999999  55 89999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

Probab=98.37  E-value=1.8e-06  Score=56.79  Aligned_cols=56  Identities=23%  Similarity=0.433  Sum_probs=50.5

Q ss_pred             ccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHH
Q 031190           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (164)
Q Consensus        52 ~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~  117 (164)
                      ...++.++|..       ++..+.+++++.++++.|.+++.+.+||+  + +|+++|+||..|+++
T Consensus        54 ~~~~~~~~~~~-------~~~~v~~~~~l~~~~~~~~~~~~~~~~V~--~-~~~~~Gvvt~~di~~  109 (110)
T cd04595          54 GHAPVKDYMST-------DVVTVPPDTPLSEVQELMVEHDIGRVPVV--E-DGRLVGIVTRTDLLR  109 (110)
T ss_pred             ccCcHHHHhcC-------CCEEECCCCcHHHHHHHHHHcCCCeeEEE--e-CCEEEEEEEhHHhhc
Confidence            55789999976       59999999999999999999999999999  6 789999999999853

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.37  E-value=1.7e-06  Score=59.67  Aligned_cols=55  Identities=31%  Similarity=0.471  Sum_probs=49.5

Q ss_pred             cccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHH
Q 031190           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (164)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~  117 (164)
                      ..++.++|.+       ++..+.+++++.++++.|.+++.+.+||+  ++ |+++|+|+..|+++
T Consensus        80 ~~~v~~~~~~-------~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv--~~-~~~~Gvit~~di~~  134 (135)
T cd04621          80 PLVAEDIMTE-------EIITVSPNDDVVDAAKLMLEANISGLPVV--DN-DNIVGVITKTDICR  134 (135)
T ss_pred             cccHHHhcCC-------CCeEECCCCCHHHHHHHHHHcCCCEEEEE--eC-CEEEEEEEHHHHhh
Confidence            4579999987       58999999999999999999999999999  55 89999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

Probab=98.37  E-value=1.6e-06  Score=57.56  Aligned_cols=56  Identities=20%  Similarity=0.347  Sum_probs=49.6

Q ss_pred             cccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCC--CcEEEEEehHHHHH
Q 031190           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ--KSVAGIITERDYLR  117 (164)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~--~~~vGivt~~dil~  117 (164)
                      ...+.++|..       ++.++.+++++.+++++|.+++...+||+  |++  |+++|+||..|+++
T Consensus        57 ~~~~~~~~~~-------~~~~v~~~~~l~~~l~~~~~~~~~~~~Vv--d~~~~~~~~Gvit~~di~~  114 (115)
T cd04593          57 PSAVDEVATP-------PLLTVHPDEPLAHALDRMASRGLRQLPVV--DRGNPGQVLGLLTRENVLL  114 (115)
T ss_pred             cccHHHhccC-------CceEECCCCCHHHHHHHHHHcCCceeeEE--eCCCCCeEEEEEEhHHhhc
Confidence            3458888876       59999999999999999999999999999  665  79999999999864

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d

>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

Probab=98.36  E-value=1.3e-06  Score=59.85  Aligned_cols=55  Identities=20%  Similarity=0.385  Sum_probs=50.2

Q ss_pred             cccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHH
Q 031190           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (164)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~  117 (164)
                      ..++.++|.+       ++..+.+++++.++++.|.+.+.+.+||+  | +|+++|+||.+|+++
T Consensus        80 ~~~v~~~~~~-------~~~~v~~~~~~~~~~~~~~~~~~~~l~Vv--d-~g~~~Gvit~~di~~  134 (135)
T cd04586          80 GRKVADVMTR-------PVVTVGEDTPLAEVAELMEEHRIKRVPVV--R-GGRLVGIVSRADLLR  134 (135)
T ss_pred             CCCHHHHhCC-------CceEeCCCCcHHHHHHHHHHcCCCccCEe--c-CCEEEEEEEhHhhhc
Confidence            4679999977       59999999999999999999999999999  7 799999999999864

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain

Probab=98.36  E-value=1.6e-06  Score=57.07  Aligned_cols=53  Identities=25%  Similarity=0.384  Sum_probs=47.0

Q ss_pred             ccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHH
Q 031190           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYL  116 (164)
Q Consensus        54 ~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil  116 (164)
                      ..+.++|.+        +.++.+++++.++++.|..++.+.+||+  |++|+++|+||.+|++
T Consensus        57 ~~~~~~~~~--------~~~v~~~~~l~~~~~~~~~~~~~~~~Vv--~~~~~~~Gvit~~di~  109 (111)
T cd04590          57 LDLRDLLRP--------PLFVPESTPLDDLLEEMRKERSHMAIVV--DEYGGTAGLVTLEDIL  109 (111)
T ss_pred             CCHHHHhcC--------CeecCCCCcHHHHHHHHHhcCCcEEEEE--ECCCCEEEEeEHHHhh
Confidence            456776643        8999999999999999999999999999  7779999999999985

CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,

>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50

Probab=98.36  E-value=1.1e-06  Score=58.23  Aligned_cols=58  Identities=24%  Similarity=0.454  Sum_probs=49.6

Q ss_pred             cccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHH
Q 031190           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (164)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~  117 (164)
                      ..++.++|.+..     .+.++.+++++.+|++.|.+++.+.+||+  |++|+++|+|+.+|+++
T Consensus        56 ~~~v~~~~~~~~-----~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv--~~~~~~~Gvl~~~di~~  113 (114)
T cd04801          56 QTTVIQVMTPAA-----KLVTVLSEESLAEVLKLLEEQGLDELAVV--EDSGQVIGLITEADLLR  113 (114)
T ss_pred             ccchhhhhcccc-----cceEECCCCcHHHHHHHHHHCCCCeeEEE--cCCCcEEEEEeccceec
Confidence            467889987521     26789999999999999999999999999  66789999999999853

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>smart00116 CBS Domain in cystathionine beta-synthase and other proteins

Probab=98.34  E-value=2.8e-06  Score=46.80  Aligned_cols=45  Identities=29%  Similarity=0.502  Sum_probs=41.2

Q ss_pred             ceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHH
Q 031190           71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (164)
Q Consensus        71 ~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~  117 (164)
                      +.++.+++++.++++.|..++...+||+  +++++++|+++..++++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~g~i~~~~l~~   46 (49)
T smart00116        2 VVTVSPDTTLEEALELLREHGIRRLPVV--DEEGRLVGIVTRRDIIK   46 (49)
T ss_pred             ceEecCCCcHHHHHHHHHHhCCCcccEE--CCCCeEEEEEEHHHHHH
Confidence            6788999999999999999999999999  67789999999999865

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.

>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=98.34  E-value=2.2e-06  Score=56.13  Aligned_cols=56  Identities=21%  Similarity=0.424  Sum_probs=48.7

Q ss_pred             cccHHHHhhhcCCCCCCCceEecC-CCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHH
Q 031190           53 STTISDILKAKGKGADGSWLWCTT-DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (164)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~-~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~  117 (164)
                      ..++.++|..       .+..+.+ ++++.++++.|.+.+...+||+  +++|+++|+|+.+|+++
T Consensus        53 ~~~v~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv--~~~~~~~Gvi~~~dil~  109 (110)
T cd04601          53 DKPVSEVMTP-------ENLLTTVEGTSLEEALELLHEHKIEKLPVV--DDEGKLKGLITVKDIEK  109 (110)
T ss_pred             CCCHHHhccc-------CceEEecCCCCHHHHHHHHHHhCCCeeeEE--cCCCCEEEEEEhhhhhc
Confidence            4678899976       3666676 9999999999999999999999  77899999999999864

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.

>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=98.34  E-value=2e-06  Score=57.12  Aligned_cols=55  Identities=16%  Similarity=0.314  Sum_probs=48.1

Q ss_pred             ccHHHHhhhcCCCCCCCceEecC--CCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHH
Q 031190           54 TTISDILKAKGKGADGSWLWCTT--DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (164)
Q Consensus        54 ~~v~dim~~~~~~~~~~~~~v~~--~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~  117 (164)
                      ..+.++|..       ...++..  ++++.++++.|..++...+||+  +++|+++|+||.+|+++
T Consensus        57 ~~v~~~~~~-------~~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv--~~~~~~~Gvit~~di~~  113 (114)
T cd04602          57 TPLSEVMTP-------REVLVVAPTGITLEEANEILRESKKGKLPIV--NDDGELVALVTRSDLKK  113 (114)
T ss_pred             CCHHHhcCC-------CceEEECCCCCCHHHHHHHHHhcCCCceeEE--CCCCeEEEEEEHHHhhc
Confidence            468899976       4677765  9999999999999999999999  77889999999999853

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos

>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.34  E-value=2.3e-06  Score=56.39  Aligned_cols=55  Identities=33%  Similarity=0.486  Sum_probs=49.5

Q ss_pred             ccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHH
Q 031190           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (164)
Q Consensus        54 ~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~  117 (164)
                      .++.++|..       .+.++.+++++.++++.|...+.+.+||+  +++|+++|+|+..|+++
T Consensus        58 ~~~~~~~~~-------~~~~v~~~~~~~~~~~~~~~~~~~~~~V~--~~~~~~~G~it~~di~~  112 (113)
T cd04622          58 TTVGDVMTR-------GVVTVTEDDDVDEAARLMREHQVRRLPVV--DDDGRLVGIVSLGDLAR  112 (113)
T ss_pred             CCHHHhccC-------CccEECCCCCHHHHHHHHHHcCCCeeeEE--CCCCcEEEEEEHHHhhc
Confidence            359999977       58999999999999999999999999999  77799999999999853

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=98.34  E-value=2.8e-06  Score=55.76  Aligned_cols=55  Identities=35%  Similarity=0.640  Sum_probs=49.6

Q ss_pred             ccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHH
Q 031190           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (164)
Q Consensus        54 ~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~  117 (164)
                      ..+.++|..       .+.++.+++++.++++.|.+.+...+||+  +++|+++|+|+..|+++
T Consensus        55 ~~v~~~~~~-------~~~~v~~~~~~~~~~~~~~~~~~~~~~V~--~~~~~~~G~i~~~dl~~  109 (110)
T cd04588          55 AKVKDVMTK-------DVITIDEDEQLYDAIRLMNKHNVGRLIVT--DDEGRPVGIITRTDILR  109 (110)
T ss_pred             cCHHHHhcC-------CceEECCCCCHHHHHHHHHhcCCCEEEEE--CCCCCEEEEEEhHHhhc
Confidence            578888876       59999999999999999999999999999  77789999999999863

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.

>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.33  E-value=2e-06  Score=57.63  Aligned_cols=46  Identities=35%  Similarity=0.467  Sum_probs=42.5

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHH
Q 031190           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (164)
Q Consensus        70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~  117 (164)
                      ++.++.+++++.++++.|.+++.+.+||+  |++|+++|+||.+|+++
T Consensus        74 ~~~~v~~~~~l~~~~~~m~~~~~~~l~Vv--d~~~~~~Givt~~di~~  119 (120)
T cd04641          74 GVRTCSPDDCLRTIFDLIVKARVHRLVVV--DENKRVEGIISLSDILQ  119 (120)
T ss_pred             CCeEEcCCCcHHHHHHHHHhcCccEEEEE--CCCCCEEEEEEHHHhhc
Confidence            47899999999999999999999999999  77789999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=98.33  E-value=2.4e-06  Score=56.21  Aligned_cols=55  Identities=29%  Similarity=0.479  Sum_probs=49.6

Q ss_pred             cccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHH
Q 031190           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (164)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~  117 (164)
                      ..++.++|..       ++..+.+++++.++++.|.+++.+.+||+  ++ |+++|+++..|+++
T Consensus        56 ~~~i~~~~~~-------~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv--~~-~~~~Giit~~di~~  110 (111)
T cd04800          56 DTPVSEVMTA-------PPITIPPDATVFEALLLMLERGIHHLPVV--DD-GRLVGVISATDLLR  110 (111)
T ss_pred             cCCHHHHhCC-------CCeEECCCCcHHHHHHHHHHcCCCeeeEe--EC-CEEEEEEEHHHhhc
Confidence            4679999976       59999999999999999999999999999  55 89999999999853

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa

>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=98.33  E-value=2.3e-06  Score=55.67  Aligned_cols=54  Identities=19%  Similarity=0.341  Sum_probs=48.8

Q ss_pred             cccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHH
Q 031190           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYL  116 (164)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil  116 (164)
                      ...+.++|..       ++.++.+++++.++++.|.+++...+||+  |+ |+++|+||..|++
T Consensus        50 ~~~~~~~~~~-------~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv--~~-~~~~G~it~~~l~  103 (105)
T cd04599          50 NRLVADAMTR-------EVVTISPEASLLEAKRLMEEKKIERLPVL--RE-RKLVGIITKGTIA  103 (105)
T ss_pred             cCCHHHHccC-------CCEEECCCCCHHHHHHHHHHcCCCEeeEE--EC-CEEEEEEEHHHhc
Confidence            4568899977       59999999999999999999999999999  55 8999999999985

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=98.32  E-value=1.9e-06  Score=56.71  Aligned_cols=56  Identities=25%  Similarity=0.362  Sum_probs=50.6

Q ss_pred             cccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCC-CCcEEEEEehHHHHH
Q 031190           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGE-QKSVAGIITERDYLR  117 (164)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~-~~~~vGivt~~dil~  117 (164)
                      ..++.++|..       ++.++.+++++.++++.|...+.+.+||+  ++ .++++|+|+..|++.
T Consensus        57 ~~~v~~~~~~-------~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv--~~~~~~~~Gvvt~~di~~  113 (114)
T cd04613          57 LVVASDIMTK-------PPVVVYPEDSLEDALKKFEDSDYEQLPVV--DDDPGKLLGILSRSDLLS  113 (114)
T ss_pred             cEEHHHhccC-------CCcEEcCCCCHHHHHHHHhhCCccEeeEE--eCCCCEEEEEEEhHHhhc
Confidence            3789999987       59999999999999999999999999999  66 789999999999853

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a

>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.32  E-value=2.1e-06  Score=55.62  Aligned_cols=56  Identities=16%  Similarity=0.367  Sum_probs=48.3

Q ss_pred             ccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHH
Q 031190           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (164)
Q Consensus        54 ~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~  117 (164)
                      ++..+++...      .+.++.+++++.++++.|.+++...+||+  +++|+++|+||.+|+++
T Consensus        40 v~~~dl~~~~------~~~~v~~~~~l~~a~~~m~~~~~~~lpVv--~~~~~~~Giit~~di~~   95 (96)
T cd04614          40 ITERDLIAKS------EVVTATKRTTVSECAQKMKRNRIEQIPII--NGNDKLIGLLRDHDLLK   95 (96)
T ss_pred             EEHHHHhcCC------CcEEecCCCCHHHHHHHHHHhCCCeeeEE--CCCCcEEEEEEHHHhhc
Confidence            4666766542      38899999999999999999999999999  77789999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional

Probab=98.31  E-value=2.3e-06  Score=67.37  Aligned_cols=57  Identities=18%  Similarity=0.265  Sum_probs=51.9

Q ss_pred             ccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHH
Q 031190           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (164)
Q Consensus        52 ~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~  117 (164)
                      ...++.++|..       ++.++.+++++.+|++.|.+++...+||+  |++|+++|+||..|+++
T Consensus       261 ~~~~v~~im~~-------~~~~v~~~~~l~~a~~~m~~~~~~~lpVv--d~~~~lvGvIt~~di~~  317 (321)
T PRK11543        261 LTTPVNEAMTR-------GGTTLQAQSRAIDAKEILMKRKITAAPVV--DENGKLTGAINLQDFYQ  317 (321)
T ss_pred             cCCcHHHhcCC-------CCEEECCCCCHHHHHHHHHHcCCCEEEEE--cCCCeEEEEEEHHHHHh
Confidence            34578999987       58999999999999999999999999999  77789999999999975

>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.31  E-value=2.4e-06  Score=56.28  Aligned_cols=55  Identities=22%  Similarity=0.495  Sum_probs=49.2

Q ss_pred             cccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHH
Q 031190           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (164)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~  117 (164)
                      ..++.++|..       ++..+.+++++.++++.|.+++...+||+  ++ |+++|+||..|++.
T Consensus        56 ~~~v~~~~~~-------~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv--~~-~~~~G~it~~di~~  110 (111)
T cd04626          56 EKKVFNIVSQ-------DVFYVNEEDTIDEALDIMREKQIGRLPVV--DD-NKLIGVVRTKDILD  110 (111)
T ss_pred             cCcHHHHhcC-------CcEEEcCCCcHHHHHHHHHHcCCCeeeEe--EC-CEEEEEEEhHHhcc
Confidence            3578899876       58999999999999999999999999999  55 89999999999853

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.31  E-value=2.8e-06  Score=55.95  Aligned_cols=56  Identities=20%  Similarity=0.421  Sum_probs=49.2

Q ss_pred             ccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHH
Q 031190           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (164)
Q Consensus        52 ~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~  117 (164)
                      ...++.++|.+       ++..+.+++++.++++.|.+++.+.+||+  +++ +++|+|+.+|+++
T Consensus        56 ~~~~~~~~~~~-------~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv--~~~-~~~Gvi~~~di~~  111 (112)
T cd04802          56 REVPVGEVMST-------PLITIDPNASLNEAAKLMAKHGIKRLPVV--DDD-ELVGIVTTTDIVM  111 (112)
T ss_pred             ccCCHHHhcCC-------CcEEECCCCCHHHHHHHHHHcCCCeeEEe--eCC-EEEEEEEhhhhhc
Confidence            34678999976       58999999999999999999999999999  554 8999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.31  E-value=1.9e-06  Score=57.55  Aligned_cols=56  Identities=32%  Similarity=0.505  Sum_probs=50.0

Q ss_pred             ccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHH
Q 031190           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (164)
Q Consensus        52 ~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~  117 (164)
                      ...++.++|..       ++..+.+++++.++++.|.+.+.+.+||+  ++ |+++|+++.+|+++
T Consensus        65 ~~~~~~~~~~~-------~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv--~~-~~~~Gvi~~~dl~~  120 (121)
T cd04633          65 RNLPVSDIMTR-------PVITIEPDTSVSDVASLMLENNIGGLPVV--DD-GKLVGIVTRTDILR  120 (121)
T ss_pred             hccCHHHHccC-------CceEECCCCcHHHHHHHHHHcCCCcccEE--EC-CEEEEEEEHHHhhc
Confidence            45678899876       59999999999999999999999999999  66 89999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.30  E-value=2.2e-06  Score=56.57  Aligned_cols=55  Identities=29%  Similarity=0.426  Sum_probs=49.3

Q ss_pred             cccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHH
Q 031190           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (164)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~  117 (164)
                      ...+.++|..       ++.++.+++++.++++.|.+++.+.+||+  |+ |+++|+||.+|+++
T Consensus        59 ~~~v~~~~~~-------~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv--~~-~~~~Gvit~~di~~  113 (114)
T cd04629          59 VATVRDIMTT-------EVLTVSPDDSIVDLAQLMLKAKPKRYPVV--DD-GKLVGQISRRDVLR  113 (114)
T ss_pred             CccHHHHhcc-------CceEECCCCcHHHHHHHHHHhCCCccCEE--EC-CEEEEEEEHHHHhc
Confidence            4678899976       58999999999999999999999999999  55 89999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=98.30  E-value=3.8e-06  Score=55.09  Aligned_cols=55  Identities=29%  Similarity=0.546  Sum_probs=49.5

Q ss_pred             ccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHH
Q 031190           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (164)
Q Consensus        54 ~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~  117 (164)
                      ..+.++|..       ++.++.+++++.++++.|.+++.+.+||+  +++++++|+|+..|+++
T Consensus        56 ~~~~~~~~~-------~~~~v~~~~~~~~~~~~~~~~~~~~~~V~--~~~~~~~G~it~~di~~  110 (111)
T cd04612          56 VLVGDVMTR-------DPVTASPDETLRDALKRMAERDIGRLPVV--DDSGRLVGIVSRSDLLR  110 (111)
T ss_pred             cCHHHhccC-------CCeEECCCCCHHHHHHHHHhCCCCeeeEE--cCCCCEEEEEEHHHhhh
Confidence            367888877       59999999999999999999999999999  66799999999999853

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an

>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.30  E-value=2.7e-06  Score=58.00  Aligned_cols=54  Identities=26%  Similarity=0.468  Sum_probs=48.9

Q ss_pred             ccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHH
Q 031190           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (164)
Q Consensus        54 ~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~  117 (164)
                      .++.++|..       ++..+.+++++.++++.|.+.+.+.+||+  ++ |+++|+||..|+++
T Consensus        78 ~~v~~~~~~-------~~~~v~~~~~l~~~~~~~~~~~~~~~~V~--~~-~~~iGvit~~dl~~  131 (132)
T cd04636          78 KKVEEIMTK-------KVITVDEDTTIEDVARIMSKKNIKRLPVV--DD-GKLVGIISRGDIIR  131 (132)
T ss_pred             CCHHHhccC-------CceEECCCCcHHHHHHHHHHCCCCeeEEE--EC-CEEEEEEEHHHhhc
Confidence            378899876       58999999999999999999999999999  66 99999999999964

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.30  E-value=3.5e-06  Score=55.50  Aligned_cols=56  Identities=29%  Similarity=0.471  Sum_probs=50.1

Q ss_pred             cccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHH
Q 031190           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (164)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~  117 (164)
                      +..+.++|..       ++.++.+++++.++++.|.+++...+||+  +++|+++|+++..|+++
T Consensus        56 ~~~v~~~~~~-------~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv--~~~g~~~Gilt~~dl~~  111 (112)
T cd04624          56 DTPVSEIMTR-------DLVTVDPDEPVAEAAKLMRKNNIRHHLVV--DKGGELVGVISIRDLVR  111 (112)
T ss_pred             ccCHHHhccC-------CCEEECCCCcHHHHHHHHHHcCccEEEEE--cCCCcEEEEEEHHHhcc
Confidence            4578899876       59999999999999999999999999999  77799999999999853

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.30  E-value=1.5e-06  Score=58.91  Aligned_cols=57  Identities=21%  Similarity=0.317  Sum_probs=46.6

Q ss_pred             ccccHHHHhhhcCCCCCCCceE--e----cCCCcHHHHHHHHHHcCCCeEEEEecCCC-CcEEEEEehHHHHH
Q 031190           52 ESTTISDILKAKGKGADGSWLW--C----TTDDTVYDAVKSMTQHNVGALVVVKPGEQ-KSVAGIITERDYLR  117 (164)
Q Consensus        52 ~~~~v~dim~~~~~~~~~~~~~--v----~~~~tl~~a~~~~~~~~~~~ipVv~~d~~-~~~vGivt~~dil~  117 (164)
                      ...+++++|..       ++..  +    .+++++.++++.|.+++.+.+||+  |++ |+++|+||.+|+++
T Consensus        62 ~~~~v~~im~~-------~~~~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVv--d~~~~~~~G~it~~di~~  125 (126)
T cd04640          62 SELTVADVMTP-------KEDLKALDLEELENASVGDVVETLKASGRQHALVV--DREHHQIRGIISTSDIAR  125 (126)
T ss_pred             hheEHHHhcCc-------hhhhccccHHHhccCcHHHHHHHHHHCCCceEEEE--ECCCCEEEEEEeHHHHhh
Confidence            34679999975       2333  3    368999999999999999999999  665 79999999999964

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.29  E-value=3.3e-06  Score=57.14  Aligned_cols=58  Identities=31%  Similarity=0.543  Sum_probs=49.4

Q ss_pred             cccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHH
Q 031190           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (164)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~  117 (164)
                      ...+.++|..       +++++.+++++.++++.|.+++...+||++.+++|+++|+||.+|+++
T Consensus        70 ~~~~~~~~~~-------~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~  127 (128)
T cd04632          70 DLPVYDAMSS-------PVITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLR  127 (128)
T ss_pred             cCcHHHHhcC-------CCceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhhc
Confidence            4578899976       599999999999999999999999999983124689999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

Probab=98.29  E-value=4e-06  Score=55.02  Aligned_cols=53  Identities=34%  Similarity=0.515  Sum_probs=48.4

Q ss_pred             cHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHH
Q 031190           55 TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYL  116 (164)
Q Consensus        55 ~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil  116 (164)
                      .+.++|..       ++.++.+++++.++++.|.+++...+||+  +++|+++|+|+..|++
T Consensus        56 ~~~~~~~~-------~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv--~~~~~~~G~v~~~di~  108 (110)
T cd04605          56 SVEDIMTR-------NVITATPDEPIDVAARKMERHNISALPVV--DAENRVIGIITSEDIS  108 (110)
T ss_pred             CHHHhcCC-------CCeEECCCCcHHHHHHHHHHhCCCEEeEE--CCCCcEEEEEEHHHhh
Confidence            58888876       58999999999999999999999999999  7789999999999984

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.29  E-value=3.9e-06  Score=56.19  Aligned_cols=55  Identities=27%  Similarity=0.380  Sum_probs=49.5

Q ss_pred             ccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHH
Q 031190           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (164)
Q Consensus        54 ~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~  117 (164)
                      ..+.++|..       ++..+.+++++.++++.|.+++...+||+  +++++++|+++..|+++
T Consensus        67 ~~~~~~~~~-------~~~~v~~~~~l~~~~~~~~~~~~~~~~vv--~~~~~~~Gvit~~dll~  121 (122)
T cd04637          67 RRAHQIMTR-------DPITVSPDTPVDEASKLLLENSISCLPVV--DENGQLIGIITWKDLLK  121 (122)
T ss_pred             hHHHHhhcC-------CCeeeCCCCcHHHHHHHHHHcCCCeEeEE--CCCCCEEEEEEHHHhhh
Confidence            467888876       59999999999999999999999999999  77799999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=98.27  E-value=3.4e-06  Score=70.32  Aligned_cols=60  Identities=15%  Similarity=0.248  Sum_probs=53.2

Q ss_pred             ccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHH
Q 031190           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRK  118 (164)
Q Consensus        52 ~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~  118 (164)
                      .+.+++++|++..     +++++.+++++.+|+++|.++++..+||+  |++++++|+||.+|+++.
T Consensus       159 ~~~~V~dIMt~~~-----~~itv~~d~~l~eAl~lM~e~~i~~LPVV--D~~g~LvGIIT~~Dilk~  218 (502)
T PRK07107        159 LDTKVKDFMTPFE-----KLVTANEGTTLKEANDIIWDHKLNTLPIV--DKNGNLVYLVFRKDYDSH  218 (502)
T ss_pred             CCCCHHHHhCCCC-----CeEEECCCCcHHHHHHHHHHcCCCEEEEE--cCCCeEEEEEEhHHHHhc
Confidence            4578999998522     38899999999999999999999999999  778999999999999763

>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=98.27  E-value=4.2e-06  Score=55.05  Aligned_cols=56  Identities=27%  Similarity=0.435  Sum_probs=49.7

Q ss_pred             ccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHH
Q 031190           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (164)
Q Consensus        52 ~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~  117 (164)
                      ...++.++|..       ++..+.+++++.++++.|.+++...+||+  ++ ++++|+||..|+++
T Consensus        55 ~~~~i~~~~~~-------~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv--~~-~~~~G~it~~dl~~  110 (111)
T cd04589          55 SSTPVGEIATF-------PLITVDPDDFLFNALLLMTRHRIHRVVVR--EG-GEVVGVLEQTDLLS  110 (111)
T ss_pred             CCCCHHHHhCC-------CcEEECCCCcHHHHHHHHHHhCccEEEEe--eC-CEEEEEEEhHHhhc
Confidence            34678999976       59999999999999999999999999999  54 89999999999864

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or

>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.27  E-value=3.3e-06  Score=55.91  Aligned_cols=54  Identities=20%  Similarity=0.322  Sum_probs=47.3

Q ss_pred             cccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHH
Q 031190           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (164)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~  117 (164)
                      +.++.++|.+       ++.++.+++++.+|++.|.+.+  .+||+  |++|+++|+||.+|+++
T Consensus        62 ~~~v~~~~~~-------~~~~v~~~~~l~~a~~~~~~~~--~~~Vv--~~~~~~~Gvit~~dil~  115 (116)
T cd04643          62 DLKVIDVMNT-------DVPVIIDDADIEEILHLLIDQP--FLPVV--DDDGIFIGIITRREILK  115 (116)
T ss_pred             CCcHHHHhcC-------CCceecCCCCHHHHHHHHhcCC--ceeEE--eCCCeEEEEEEHHHhhc
Confidence            4678999987       5999999999999999998754  59999  77899999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.26  E-value=2.9e-06  Score=57.40  Aligned_cols=46  Identities=24%  Similarity=0.407  Sum_probs=42.7

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHH
Q 031190           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (164)
Q Consensus        70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~  117 (164)
                      ++.++++++++.+|+++|.+++.+.+||+  |++++++|+||..|+++
T Consensus        80 ~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv--d~~~~~~Giit~~dil~  125 (126)
T cd04642          80 PLITCTPSSTLKEVITKLVANKVHRVWVV--DEEGKPIGVITLTDIIS  125 (126)
T ss_pred             CCeEECCCCcHHHHHHHHHHhCCcEEEEE--CCCCCEEEEEEHHHHhc
Confidence            58999999999999999999999999999  77799999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=98.26  E-value=5e-06  Score=55.45  Aligned_cols=56  Identities=34%  Similarity=0.470  Sum_probs=50.0

Q ss_pred             ccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHH
Q 031190           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (164)
Q Consensus        52 ~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~  117 (164)
                      ...++.++|..       .+.++.+++++.++++.|.+.+.+.+||+  ++ |+++|+|+.+|+++
T Consensus        65 ~~~~v~~~~~~-------~~~~i~~~~~l~~~~~~~~~~~~~~~~V~--~~-~~~~Gvv~~~di~~  120 (121)
T cd04584          65 LKMPVKEIMTK-------DVITVHPLDTVEEAALLMREHRIGCLPVV--ED-GRLVGIITETDLLR  120 (121)
T ss_pred             cCcCHHHHhhC-------CCeEECCCCcHHHHHHHHHHcCCCeEEEe--eC-CEEEEEEEHHHhhc
Confidence            34678899987       58999999999999999999999999999  55 89999999999864

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in

>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]

Probab=98.24  E-value=3e-06  Score=65.19  Aligned_cols=61  Identities=16%  Similarity=0.316  Sum_probs=55.9

Q ss_pred             ccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHH
Q 031190           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIV  121 (164)
Q Consensus        52 ~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~  121 (164)
                      ...+++.+|++       ++.++.++++..+++-.+.+.+..++||+  |..|+++||||..|++..+..
T Consensus       313 ~~~~vk~imt~-------~v~tv~pdtpa~~lvp~lad~g~H~lpvl--d~~g~lvGIvsQtDliaal~r  373 (382)
T COG3448         313 RPPTVKGIMTT-------PVVTVRPDTPAVELVPRLADEGLHALPVL--DAAGKLVGIVSQTDLIAALYR  373 (382)
T ss_pred             CCCcccccccC-------cceeecCCCcHHHHHHHhhcCCcceeeEE--cCCCcEEEEeeHHHHHHHHHH
Confidence            45788999997       49999999999999999999999999999  899999999999999887653

>PRK10892 D-arabinose 5-phosphate isomerase; Provisional

Probab=98.24  E-value=3.9e-06  Score=66.27  Aligned_cols=57  Identities=18%  Similarity=0.356  Sum_probs=51.5

Q ss_pred             cccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHH
Q 031190           51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (164)
Q Consensus        51 ~~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~  117 (164)
                      +.+.++.++|.+       ++.++.+++++.+|++.|.+++...+||+  + +++++|+||..|+++
T Consensus       266 ~~~~~v~~im~~-------~~~~v~~~~~l~~a~~~m~~~~~~~lpVv--~-~~~lvGiit~~dil~  322 (326)
T PRK10892        266 LRQASIADVMTP-------GGIRVRPGILAVDALNLMQSRHITSVLVA--D-GDHLLGVLHMHDLLR  322 (326)
T ss_pred             cccCCHHHhcCC-------CCEEECCCCCHHHHHHHHHHCCCcEEEEe--e-CCEEEEEEEhHHhHh
Confidence            345689999987       59999999999999999999999999999  5 578999999999975

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=98.21  E-value=5.6e-06  Score=68.65  Aligned_cols=57  Identities=18%  Similarity=0.256  Sum_probs=52.4

Q ss_pred             ccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHH
Q 031190           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI  119 (164)
Q Consensus        54 ~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~  119 (164)
                      ..+.++|..       ++.++++++++.+|+++|.+++...+||+  |++++++|+||.+|+++..
T Consensus       148 ~~V~diMt~-------~~itV~~d~sL~eAl~lM~~~~i~~LPVV--D~~g~lvGIIT~~DIl~~~  204 (479)
T PRK07807        148 TQVRDVMST-------DLVTLPAGTDPREAFDLLEAARVKLAPVV--DADGRLVGVLTRTGALRAT  204 (479)
T ss_pred             CCHHHhccC-------CceEECCCCcHHHHHHHHHhcCCCEEEEE--cCCCeEEEEEEHHHHHHHh
Confidence            568999987       69999999999999999999999999999  7788999999999998754

>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea

Probab=98.21  E-value=5.2e-06  Score=54.20  Aligned_cols=54  Identities=19%  Similarity=0.187  Sum_probs=47.8

Q ss_pred             ccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHH
Q 031190           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (164)
Q Consensus        54 ~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~  117 (164)
                      .++.++|..       .+.++.++.++.++++.|.+++...+||+  + +|+++|+||..|++.
T Consensus        50 ~~~~~~~~~-------~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv--~-~~~~iGvit~~dl~~  103 (104)
T cd04594          50 GDVVDYIVR-------GIPYVRLTSTAEEAWEVMMKNKTRWCPVV--D-DGKFKGIVTLDSILD  103 (104)
T ss_pred             cchhhhhhc-------CCcEEcCCCCHHHHHHHHHHcCcceEEEE--E-CCEEEEEEEHHHhhc
Confidence            357788876       58999999999999999999999999999  5 589999999999853

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do

>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=98.19  E-value=1.4e-06  Score=59.11  Aligned_cols=58  Identities=21%  Similarity=0.223  Sum_probs=48.7

Q ss_pred             ccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHH---------cCCCeEEEEecCCCCcEEEEEehHHHHHH
Q 031190           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQ---------HNVGALVVVKPGEQKSVAGIITERDYLRK  118 (164)
Q Consensus        52 ~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~---------~~~~~ipVv~~d~~~~~vGivt~~dil~~  118 (164)
                      .+.+++++|..       ++.++.+++++.++.+++..         .+...+||+  +++|+++|+||.+|+++.
T Consensus        57 ~~~~v~~im~~-------~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~Givt~~Dl~~~  123 (124)
T cd04608          57 PSDPVSKALYK-------QFKRVNKNDTLGKLSRILETDAFLLVFFEQISSAAIGK--EKQEKPIGIVTKIDLLSY  123 (124)
T ss_pred             CCCcHHHHhhc-------cceecCCCCCHHHHHhhcccCCceEEEecccccccccc--ccccceEEEEehhHhhhh
Confidence            45799999988       69999999999999996532         356778888  777999999999999763

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=98.18  E-value=7e-06  Score=68.02  Aligned_cols=58  Identities=22%  Similarity=0.307  Sum_probs=53.0

Q ss_pred             ccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHH
Q 031190           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII  120 (164)
Q Consensus        54 ~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~  120 (164)
                      ..+.++|+.       ++.++.+++++.+|+++|.+++...+||+  |++++++|+||.+|+++...
T Consensus       146 ~~V~dIMt~-------~litv~~~~sL~eAl~lM~~~~i~~LPVV--D~~g~LvGIIT~~DLl~~~~  203 (475)
T TIGR01303       146 TQVRDIMST-------DLVTAPADTEPRKAFDLLEHAPRDVAPLV--DADGTLAGILTRTGALRATI  203 (475)
T ss_pred             CCHHHHccC-------CceEeCCCCcHHHHHHHHHHcCCCEEEEE--cCCCeEEEEEEHHHHHHHHh
Confidence            579999987       69999999999999999999999999999  77899999999999987543

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=98.17  E-value=8.3e-06  Score=68.10  Aligned_cols=63  Identities=16%  Similarity=0.228  Sum_probs=54.7

Q ss_pred             ccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHH
Q 031190           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIV  121 (164)
Q Consensus        52 ~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~  121 (164)
                      .+.+|.++|++..     .++++.+++++.+|+++|.+++...+||+  |++++++|+||++|+++....
T Consensus       161 ~~~~V~eIMt~~~-----~lvtv~~~~sL~eAl~~m~~~~~~~LPVV--D~~g~LvGvITr~DIlk~~~~  223 (505)
T PLN02274        161 RETKLSEVMTSDD-----DLVTAPAGIDLEEAEAVLKDSKKGKLPLV--NEDGELVDLVTRTDVKRVKGY  223 (505)
T ss_pred             cCCcHHHHhccCC-----CcEEECCCCCHHHHHHHHHHcCCCEEEEE--cCCCeEEEEEEHHHHHHHhhC
Confidence            4567999998621     27899999999999999999999999999  788999999999999876643

>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria

Probab=98.11  E-value=9.8e-06  Score=53.27  Aligned_cols=45  Identities=22%  Similarity=0.324  Sum_probs=41.5

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHH
Q 031190           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (164)
Q Consensus        70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~  117 (164)
                      ++.++++++++.++++.|.+++...+||+  + +|+++|+|+.+|+++
T Consensus        60 ~~~~v~~~~~l~~~~~~~~~~~~~~~pVv--~-~~~~~Gvvt~~dl~~  104 (105)
T cd04591          60 SPFTVSPRTSLEKVHQLFRKLGLRHLLVV--D-EGRLVGIITRKDLLK  104 (105)
T ss_pred             CCceECCCCcHHHHHHHHHHcCCCEEEEE--E-CCeEEEEEEhhhhhc
Confidence            58999999999999999999999999999  4 689999999999854

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS

>COG0517 FOG: CBS domain [General function prediction only]

Probab=98.11  E-value=1.2e-05  Score=53.19  Aligned_cols=52  Identities=23%  Similarity=0.410  Sum_probs=47.7

Q ss_pred             cHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHH-cCCCeEEEEecCCCC-cEEEEEehHHH
Q 031190           55 TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQ-HNVGALVVVKPGEQK-SVAGIITERDY  115 (164)
Q Consensus        55 ~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~-~~~~~ipVv~~d~~~-~~vGivt~~di  115 (164)
                      .+.++|..       ++.++.++.++.++.+.|.. ++...+||+  ++++ +++|++|..|+
T Consensus        63 ~v~~v~~~-------~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv--~~~~~~lvGivt~~di  116 (117)
T COG0517          63 PVKEVMTK-------PVVTVDPDTPLEEALELMVERHKIRRLPVV--DDDGGKLVGIITLSDI  116 (117)
T ss_pred             cHHHhccC-------CcEEECCCCCHHHHHHHHHHHcCcCeEEEE--ECCCCeEEEEEEHHHc
Confidence            68999987       59999999999999999999 699999999  6675 99999999997

>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=98.07  E-value=1.3e-05  Score=53.29  Aligned_cols=57  Identities=21%  Similarity=0.251  Sum_probs=48.1

Q ss_pred             ccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCC---CeEEEEecCCCCcEEEEEehHHHHH
Q 031190           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNV---GALVVVKPGEQKSVAGIITERDYLR  117 (164)
Q Consensus        52 ~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~---~~ipVv~~d~~~~~vGivt~~dil~  117 (164)
                      .+.+++++|.+       ++..+.+++++.++++.|.+++.   ...||+  +++|+++|+|+..|+++
T Consensus        59 ~~~~v~~~~~~-------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv--~~~~~~~Gvvs~~di~~  118 (119)
T cd04598          59 GKKPVSEVMDP-------DPLIVEADTPLEEVSRLATGRDSQNLYDGFIV--TEEGRYLGIGTVKDLLR  118 (119)
T ss_pred             cCCcHHHhcCC-------CcEEecCCCCHHHHHHHHHcCCcccccccEEE--eeCCeEEEEEEHHHHhc
Confidence            45679999987       59999999999999999998775   345688  67899999999999864

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.06  E-value=1.7e-05  Score=55.01  Aligned_cols=55  Identities=25%  Similarity=0.437  Sum_probs=49.2

Q ss_pred             cccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHH
Q 031190           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (164)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~  117 (164)
                      ..++.++|..       ++.++.+++++.+++..|.+++.+.+||+  ++ ++++|+|+.+|+++
T Consensus        88 ~~~v~~~~~~-------~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv--~~-~~~~Gvvt~~dl~~  142 (143)
T cd04634          88 KMKVRDIMTK-------KVITISPDASIEDAAELMVRHKIKRLPVV--ED-GRLVGIVTRGDIIE  142 (143)
T ss_pred             cCCHHHHcCC-------CCeEECCCCcHHHHHHHHHHcCCCEEEEE--EC-CEEEEEEEHHHhhc
Confidence            4578888877       59999999999999999999999999999  55 89999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]

Probab=98.05  E-value=2.2e-05  Score=63.36  Aligned_cols=92  Identities=16%  Similarity=0.232  Sum_probs=70.9

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCcccc-cccccc----cCCCeEEE
Q 031190           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTK-VGDIMT----EENKLITV  144 (164)
Q Consensus        70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~-v~~vm~----~~~~~~~v  144 (164)
                      ++..+..+.++.+|++.|.+.+++.+||+  +..|+.+|.++..|+........-...+.. +++...    ..++++++
T Consensus       238 ~i~~i~~~~~v~~al~~m~~~~is~lpvV--~~~g~~v~~~s~~Dv~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~vvtc  315 (381)
T KOG1764|consen  238 NIASISEDTPVIEALKIMSERRISALPVV--DENGKKVGNYSRFDVIHLAREGTYNNLDLSCLSEALSHRPIRFEGVVTC  315 (381)
T ss_pred             hheeecCCCcHHHHHHHHHhcCcCcceEE--cCCCceecceehhhhhhhhhcCccCccchhHHHHHhhhcccccCccEEE
Confidence            48899999999999999999999999999  788888999999999544332221222223 333321    22368999


Q ss_pred             cCCCCHHHHHHHHHhCCCC
Q 031190          145 SPDTKVLRAMQLMTGHMLL  163 (164)
Q Consensus       145 ~~~~~l~e~~~~m~~~~~~  163 (164)
                      .++.+|.+++..|..++.|
T Consensus       316 ~~~ssL~~vi~~lv~~~vH  334 (381)
T KOG1764|consen  316 RPTSTLAEVIDKLVAHRVH  334 (381)
T ss_pred             eecchHHHHHHHHHhcCce
Confidence            9999999999999998876

>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.04  E-value=2.4e-05  Score=50.66  Aligned_cols=53  Identities=26%  Similarity=0.484  Sum_probs=47.8

Q ss_pred             HHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHH
Q 031190           56 ISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (164)
Q Consensus        56 v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~  117 (164)
                      +.++|..       ++..+.+++++.++++.|...+.+.+||+  |++++++|+++..|+++
T Consensus        60 ~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~V~--~~~~~~~G~i~~~dl~~  112 (113)
T cd02205          60 VGDVMTR-------DVVTVSPDTSLEEAAELMLEHGIRRLPVV--DDEGRLVGIVTRSDILR  112 (113)
T ss_pred             HHHHhcC-------CceecCCCcCHHHHHHHHHHcCCCEEEEE--cCCCcEEEEEEHHHhhc
Confidence            6778876       58999999999999999999999999999  77799999999999853

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali

>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional

Probab=98.03  E-value=1.8e-05  Score=67.13  Aligned_cols=57  Identities=21%  Similarity=0.267  Sum_probs=50.8

Q ss_pred             ccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCC--CcEEEEEehHHHHHHH
Q 031190           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ--KSVAGIITERDYLRKI  119 (164)
Q Consensus        54 ~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~--~~~vGivt~~dil~~~  119 (164)
                      ..+.++|.+       ++.++++++++.++++.|.+++.+.+||+  |++  ++++|+||.+|+++.+
T Consensus       512 ~~v~dim~~-------~~~~v~~d~~L~~al~~m~~~~~~~lpVV--d~~~~~~liGvIt~~DIl~~l  570 (574)
T PRK01862        512 KTAADYAHT-------PFPLLTPDMPLGDALEHFMAFQGERLPVV--ESEASPTLAGVVYKTSLLDAY  570 (574)
T ss_pred             chHHHhccC-------CCeeECCCCCHHHHHHHHHhcCCCeeeeE--eCCCCCeEEEEEEHHHHHHHH
Confidence            578899877       58999999999999999999999999999  544  5899999999998765

>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]

Probab=98.02  E-value=3.6e-05  Score=60.67  Aligned_cols=61  Identities=25%  Similarity=0.355  Sum_probs=56.4

Q ss_pred             ccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHH
Q 031190           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIV  121 (164)
Q Consensus        52 ~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~  121 (164)
                      .+.++..+|++       ++.++.+.+|++.+...|-=.++.-+||+  +++.+++|+||++|+++.+..
T Consensus       247 ~~t~ieKVMtk-------np~tv~~~tsVAsvaq~MiwE~iem~PVv--~~n~~llGiitR~dvlk~lq~  307 (432)
T COG4109         247 PSTTIEKVMTK-------NPITVRAKTSVASVAQMMIWEGIEMLPVV--DSNNTLLGIITRQDVLKSLQM  307 (432)
T ss_pred             CCccHHHHhcc-------CCeeecccchHHHHHHHHHhccceeeeEE--cCCceEEEEEEHHHHHHHHHH
Confidence            56789999998       79999999999999999999999999999  889999999999999987753

>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.98  E-value=3.1e-05  Score=50.45  Aligned_cols=54  Identities=26%  Similarity=0.363  Sum_probs=47.3

Q ss_pred             ccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHH
Q 031190           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (164)
Q Consensus        54 ~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~  117 (164)
                      ..+.++|..       ++.++..++++.++++.|..++...+||+  + +|+++|+|+..|+++
T Consensus        52 ~~~~~~~~~-------~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv--d-~~~~~G~it~~d~~~  105 (106)
T cd04638          52 EQLALLMTR-------DPPTVSPDDDVKEAAKLMVENNIRRVPVV--D-DGKLVGIVTVADIVR  105 (106)
T ss_pred             chHHHHhcC-------CCceECCCCCHHHHHHHHHHcCCCEEEEE--E-CCEEEEEEEHHHhhc
Confidence            457788876       58999999999999999999999999999  5 379999999999853

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=97.98  E-value=3e-05  Score=50.59  Aligned_cols=54  Identities=22%  Similarity=0.337  Sum_probs=45.4

Q ss_pred             cccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHH
Q 031190           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (164)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~  117 (164)
                      ...+.++|..       ++.++++++++.++.+.|.+ . ..+||+  +++|+++|+||.+|+++
T Consensus        56 ~~~~~~~~~~-------~~~~v~~~~~l~~~~~~~~~-~-~~~~vv--~~~~~~~Gvvt~~di~~  109 (110)
T cd04609          56 SLPVREVMGE-------PLPTVDPDAPIEELSELLDR-G-NVAVVV--DEGGKFVGIITRADLLK  109 (110)
T ss_pred             CcCHHHHhcC-------CCceeCCCCcHHHHHHHHHh-C-CceeEE--ecCCeEEEEEeHHHhhc
Confidence            3578899976       58999999999999999988 3 347888  67799999999999864

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=97.98  E-value=6e-05  Score=62.85  Aligned_cols=60  Identities=20%  Similarity=0.346  Sum_probs=52.9

Q ss_pred             cccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHH
Q 031190           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII  120 (164)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~  120 (164)
                      ..++.++|..+      +++++.+++++.++++.|.+++.+.+||+  |++|+++|+||.+|+++...
T Consensus       146 ~~~V~dim~~~------~~v~v~~~~sl~eal~~m~~~~~~~lpVV--De~g~lvGiIT~~DLl~~~~  205 (486)
T PRK05567        146 SQPVSEVMTKE------RLVTVPEGTTLEEALELLHEHRIEKLPVV--DDNGRLKGLITVKDIEKAEE  205 (486)
T ss_pred             CCcHHHHcCCC------CCEEECCCCCHHHHHHHHHHcCCCEEEEE--cCCCcEEEEEEhHHhhhhhh
Confidence            35688999722      58999999999999999999999999999  88999999999999987653

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=97.92  E-value=3.6e-05  Score=64.24  Aligned_cols=59  Identities=15%  Similarity=0.320  Sum_probs=52.6

Q ss_pred             cccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHH
Q 031190           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRK  118 (164)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~  118 (164)
                      ..++.++|++..     ++.++.++.++.+|+++|.+++...+||+  |++++++|+||.+|+++.
T Consensus       158 ~~~V~diMt~~~-----~lvtv~~~~sl~eAl~lm~e~~i~~LPVV--d~~g~liGIIT~~DIl~~  216 (495)
T PTZ00314        158 STPVSEVMTPRE-----KLVVGNTPISLEEANEVLRESRKGKLPIV--NDNGELVALVSRSDLKKN  216 (495)
T ss_pred             CCCHHHhhCCcC-----CceEeCCCCCHHHHHHHHHHcCCCeEEEE--cCCCcEEEEEEehHhhhc
Confidence            467999998632     38999999999999999999999999999  788999999999999764

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=97.91  E-value=4.2e-05  Score=63.19  Aligned_cols=59  Identities=19%  Similarity=0.376  Sum_probs=52.7

Q ss_pred             cccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHH
Q 031190           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI  119 (164)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~  119 (164)
                      ..++.++|.+.      ++.++.+++++.++++.|.+++...+||+  |++|+++|+||.+|+++..
T Consensus       142 ~~~V~dvm~~~------~~~~V~~~~sl~eal~~m~~~~~~~lpVV--De~G~lvGiVT~~DIl~~~  200 (450)
T TIGR01302       142 GKPVSEVMTRE------EVITVPEGIDLEEALKVLHEHRIEKLPVV--DKNGELVGLITMKDIVKRR  200 (450)
T ss_pred             CCCHHHhhCCC------CCEEECCCCcHHHHHHHHHHcCCCeEEEE--cCCCcEEEEEEhHHhhhcc
Confidence            45788999831      49999999999999999999999999999  8899999999999998754

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]

Probab=97.89  E-value=5e-05  Score=53.53  Aligned_cols=57  Identities=23%  Similarity=0.426  Sum_probs=49.5

Q ss_pred             cccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHH
Q 031190           51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI  119 (164)
Q Consensus        51 ~~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~  119 (164)
                      +.+.+|.++|..       .+++++++.++..+-.++..+  .++.|+   ++|+++|+||..|+++.+
T Consensus       127 i~~~~vr~vM~e-------~fP~Vs~~~~l~vI~~LL~~~--~AVlV~---e~G~~vGIITk~DI~k~~  183 (187)
T COG3620         127 IRSLRVREVMGE-------PFPTVSPDESLNVISQLLEEH--PAVLVV---ENGKVVGIITKADIMKLL  183 (187)
T ss_pred             hhhhhHHHHhcC-------CCCcCCCCCCHHHHHHHHhhC--CeEEEE---eCCceEEEEeHHHHHHHH
Confidence            456899999988       699999999999999888875  668888   579999999999998754

>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

Probab=97.88  E-value=3.8e-05  Score=63.79  Aligned_cols=58  Identities=22%  Similarity=0.378  Sum_probs=53.7

Q ss_pred             ccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHH
Q 031190           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI  119 (164)
Q Consensus        52 ~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~  119 (164)
                      ...+|+++|+.       ++.+++.++-+.+|.-.|.++++.++||+   ++|+++|+||..||++..
T Consensus       212 ~~~~V~evmT~-------p~~svd~~~~~feAml~m~r~~I~hl~V~---e~gq~~Gilt~~dIl~l~  269 (610)
T COG2905         212 KTQKVSEVMTS-------PVISVDRGDFLFEAMLMMLRNRIKHLPVT---EDGQPLGILTLTDILRLF  269 (610)
T ss_pred             cccchhhhhcc-------CceeecCcchHHHHHHHHHHhCCceeeee---cCCeeeEEeeHHHHHHhh
Confidence            45799999998       79999999999999999999999999999   579999999999998854

>PRK11573 hypothetical protein; Provisional

Probab=97.88  E-value=0.00012  Score=59.95  Aligned_cols=86  Identities=13%  Similarity=0.206  Sum_probs=66.5

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCcccc-cccccccCCCeEEEcCCC
Q 031190           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTK-VGDIMTEENKLITVSPDT  148 (164)
Q Consensus        70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~-v~~vm~~~~~~~~v~~~~  148 (164)
                      ++..|+.+.++.++++.|++++.+-..|+  |+.|...|+||..|+++-+.+.-....+.. -..+....++.+.|+..+
T Consensus       263 ~~~~Vpe~~~l~~lL~~~~~~~~~~AiVv--DEyG~~~GiVTleDilEeivGei~de~d~~~~~~i~~~~~~~~~v~G~~  340 (413)
T PRK11573        263 EIYFVPEGTPLSTQLVKFQRNKKKVGLVV--DEYGDIQGLVTVEDILEEIVGDFTTSMSPTLAEEVTPQNDGSVIIDGTA  340 (413)
T ss_pred             CCeEeCCCCcHHHHHHHHHhcCCeEEEEE--ecCCCeEEEeeHHHHHHHHhCCCCcccCcccccceEEecCCEEEEEeee
Confidence            48899999999999999999999999999  889999999999999998875421111111 112222222578899999


Q ss_pred             CHHHHHHHH
Q 031190          149 KVLRAMQLM  157 (164)
Q Consensus       149 ~l~e~~~~m  157 (164)
                      ++.++.+.+
T Consensus       341 ~l~d~~~~l  349 (413)
T PRK11573        341 NVREINKAF  349 (413)
T ss_pred             EHHHHHHHh
Confidence            999998877

>TIGR00393 kpsF KpsF/GutQ family protein

Probab=97.86  E-value=4.7e-05  Score=58.34  Aligned_cols=50  Identities=18%  Similarity=0.348  Sum_probs=45.7

Q ss_pred             cccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEe
Q 031190           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIIT  111 (164)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt  111 (164)
                      ..++.++|..       ++.++.+++++.+|++.|.+++...+||+  |++|+++|+|+
T Consensus       219 ~~~v~~im~~-------~~~~v~~~~~l~~a~~~m~~~~~~~lpVv--d~~g~l~GvI~  268 (268)
T TIGR00393       219 KSEVRDFMTL-------GPKTFKLDALLLEALEFLERRKITSLVVV--DDHNKVLGVLH  268 (268)
T ss_pred             cCcHHHhCCC-------CCeEECCCCcHHHHHHHHHHcCCcEEEEE--CCCCeEEEEEC
Confidence            4679999987       58999999999999999999999999999  77889999986

This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.

>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]

Probab=97.64  E-value=0.00012  Score=60.16  Aligned_cols=60  Identities=22%  Similarity=0.297  Sum_probs=55.4

Q ss_pred             ccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHH
Q 031190           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII  120 (164)
Q Consensus        52 ~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~  120 (164)
                      .+..++++|.+       .++.+.+++.-+++.++++++..-.+||+  |++++++|+||..|+++-+-
T Consensus       194 ~~~~i~~im~~-------~~~~V~~~~dqeevA~~~~~ydl~a~PVV--d~~~~LiG~itiDDiidvi~  253 (451)
T COG2239         194 PDELLKDLMED-------DVVSVLADDDQEEVARLFEKYDLLAVPVV--DEDNRLIGIITIDDIIDVIE  253 (451)
T ss_pred             cHhHHHHHhcc-------cceeecccCCHHHHHHHHHHhCCeecceE--CCCCceeeeeeHHHHHHHHH
Confidence            56789999998       59999999999999999999999999999  89999999999999987654

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=97.62  E-value=0.00067  Score=55.27  Aligned_cols=78  Identities=9%  Similarity=0.072  Sum_probs=64.5

Q ss_pred             ecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCcccccccccccCCCeEEEcCCCCHHHH
Q 031190           74 CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRA  153 (164)
Q Consensus        74 v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~v~~vm~~~~~~~~v~~~~~l~e~  153 (164)
                      ..++.+..+++..|...+.+.++|+  |++++++|+|+..++.+...      ....+.+.+..  ...++++++++.++
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~~~~~------~~~~~~~~~~~--~~~~~~~~~~~~~~  359 (400)
T PRK10070        290 KTPGFGPRSALKLLQDEDREYGYVI--ERGNKFVGAVSIDSLKTALT------QQQGLDAALID--APLAVDAQTPLSEL  359 (400)
T ss_pred             cCCCCCHHHHHHHHHhcCCceEEEE--cCCCcEEEEEeHHHHHhhhh------cCCchhhhhcc--CCceeCCCCCHHHH
Confidence            4467789999999999999999999  88999999999999854321      12357777777  48899999999999


Q ss_pred             HHHHHhCC
Q 031190          154 MQLMTGHM  161 (164)
Q Consensus       154 ~~~m~~~~  161 (164)
                      +..|..+.
T Consensus       360 ~~~~~~~~  367 (400)
T PRK10070        360 LSHVGQAP  367 (400)
T ss_pred             HHHHHhCC
Confidence            99998754

>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]

Probab=97.59  E-value=0.00063  Score=55.93  Aligned_cols=87  Identities=16%  Similarity=0.224  Sum_probs=66.3

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCccc-ccccccccCCCeEEEcCCC
Q 031190           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKST-KVGDIMTEENKLITVSPDT  148 (164)
Q Consensus        70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~-~v~~vm~~~~~~~~v~~~~  148 (164)
                      ++..++++.++.++++.|++.+.+-..|+  |+-|.+.|+||..|+++.+.+.-....+. .-..+....++-+.++..+
T Consensus       280 ~~~~Vpet~~~~~lL~~~r~~~~hmAiVv--DEyG~~~GlVTleDIiEeIvGei~de~d~~~~~~~~~~~~~~~~v~G~~  357 (429)
T COG1253         280 PPLFVPETLSLSDLLEEFREERTHMAIVV--DEYGGVEGLVTLEDIIEEIVGEIPDEHDEDEEEDIIQRDDDGWLVDGRV  357 (429)
T ss_pred             CCeEecCCCcHHHHHHHHHHhCCeEEEEE--EcCCCeEEEeEHHHHHHHHhCCCcCcccccccccceEecCCcEEEeccc
Confidence            58999999999999999999999999999  88999999999999999887642211111 1112222211237899999


Q ss_pred             CHHHHHHHHH
Q 031190          149 KVLRAMQLMT  158 (164)
Q Consensus       149 ~l~e~~~~m~  158 (164)
                      ++.++.+.+.
T Consensus       358 ~l~e~~~~l~  367 (429)
T COG1253         358 PLEELEELLG  367 (429)
T ss_pred             cHHHHHHHhC
Confidence            9999887763

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=97.59  E-value=0.0003  Score=56.59  Aligned_cols=56  Identities=16%  Similarity=0.315  Sum_probs=49.0

Q ss_pred             cHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHH
Q 031190           55 TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII  120 (164)
Q Consensus        55 ~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~  120 (164)
                      .+.+.+..       .+.++.+++++.+++..+.+++.. +||+  |++|+++|+|+..++++.+.
T Consensus       303 ~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~-~~v~--~~~~~~~g~i~~~~~~~~~~  358 (363)
T TIGR01186       303 GLQDVLID-------DIYTVDAGTLLRETVRKVLKAGIK-VPVV--DEDQRLVGIVTRGSLVDALY  358 (363)
T ss_pred             chhhhhcc-------CCceECCCCcHHHHHHHHHhCCCC-EEEE--CCCCcEEEEEEHHHHHHHHH
Confidence            45566655       588999999999999999999999 9999  88999999999999988764

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]

Probab=97.55  E-value=0.0011  Score=52.97  Aligned_cols=87  Identities=13%  Similarity=0.194  Sum_probs=72.2

Q ss_pred             ceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCcccccccccccCCCeEEEcCCCCH
Q 031190           71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKV  150 (164)
Q Consensus        71 ~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~v~~vm~~~~~~~~v~~~~~l  150 (164)
                      +..++.++++.+-+..|.+++-.--.||  |+-|.+.|+||..|+++-+.+.-....+....++....+.-+.++.+.++
T Consensus       277 pyFVPe~Tpl~~QL~~F~~~k~hialVV--DEYG~i~GLVTLEDIlEEIVGdftde~d~~~~ev~~q~dgs~iidGs~~i  354 (423)
T COG4536         277 PYFVPEGTPLSDQLVAFQRNKKHIALVV--DEYGDIQGLVTLEDILEEIVGDFTDEHDTLAKEVIPQSDGSFIIDGSANV  354 (423)
T ss_pred             CeecCCCCcHHHHHHHHHHhcceEEEEE--eccCcEEeeeeHHHHHHHHhccccccCcccchhhcccCCCcEEEeCCCcH
Confidence            8899999999999999999998888999  89999999999999999777653333445566776665567789999999


Q ss_pred             HHHHHHHHh
Q 031190          151 LRAMQLMTG  159 (164)
Q Consensus       151 ~e~~~~m~~  159 (164)
                      .++-+.|.+
T Consensus       355 RdlNr~l~W  363 (423)
T COG4536         355 RDLNRALDW  363 (423)
T ss_pred             HHHHHhcCC
Confidence            999877754

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=97.42  E-value=0.002  Score=51.83  Aligned_cols=82  Identities=18%  Similarity=0.232  Sum_probs=67.1

Q ss_pred             ceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCcccccccccccCCCeEEEcCCCCH
Q 031190           71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKV  150 (164)
Q Consensus        71 ~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~v~~vm~~~~~~~~v~~~~~l  150 (164)
                      .....++.+..++++.|...+.+.++|+  |.++++.|.|+..++.....      ....+.+.+..  .+.++++++++
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~~~~~------~~~~~~~~~~~--~~~~~~~~~~~  321 (363)
T TIGR01186       252 PITKTADKGPRSALQLMRDERVDSLYVV--DRQNKLVGVVDVESIKQARK------KAQGLQDVLID--DIYTVDAGTLL  321 (363)
T ss_pred             ceeecCCCCHHHHHHHHHhcCCceEEEE--cCCCCEEEEEeHHHHHHHhh------cCCchhhhhcc--CCceECCCCcH
Confidence            4456678889999999999999999999  78899999999999854321      12357778877  48899999999


Q ss_pred             HHHHHHHHhCCC
Q 031190          151 LRAMQLMTGHML  162 (164)
Q Consensus       151 ~e~~~~m~~~~~  162 (164)
                      .+++..|..++.
T Consensus       322 ~~~~~~~~~~~~  333 (363)
T TIGR01186       322 RETVRKVLKAGI  333 (363)
T ss_pred             HHHHHHHHhCCC
Confidence            999999988764

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]

Probab=97.27  E-value=0.0015  Score=52.84  Aligned_cols=51  Identities=24%  Similarity=0.427  Sum_probs=47.2

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHc
Q 031190           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQ  122 (164)
Q Consensus        70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~  122 (164)
                      .+++|.++.|+.++++.+..++.++++|+  |++|.++|+||..|++..+...
T Consensus       311 ~vvtc~~~ssL~~vi~~lv~~~vHRl~VV--d~~~~l~GvvSLsDil~~l~~~  361 (381)
T KOG1764|consen  311 GVVTCRPTSTLAEVIDKLVAHRVHRLWVV--DEDGVLVGVISLSDILSYLVLT  361 (381)
T ss_pred             ccEEEeecchHHHHHHHHHhcCceEEEEE--cCCCcEEEEeeHHHHHHHHHhC
Confidence            37999999999999999999999999999  7889999999999999887654

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=97.27  E-value=0.0014  Score=53.38  Aligned_cols=50  Identities=20%  Similarity=0.239  Sum_probs=44.5

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHc
Q 031190           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQ  122 (164)
Q Consensus        70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~  122 (164)
                      ...++.+++++.+++..+...... +||+  |++|+++|+|+..++++.+...
T Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~-~~v~--~~~~~~~g~~~~~~~~~~~~~~  395 (400)
T PRK10070        346 APLAVDAQTPLSELLSHVGQAPCA-VPVV--DEDQQYVGIISKGMLLRALDRE  395 (400)
T ss_pred             CCceeCCCCCHHHHHHHHHhCCCc-EEEE--CCCCcEEEEEEHHHHHHHHHhc
Confidence            588999999999999999997666 9999  8899999999999998877543

>TIGR01137 cysta_beta cystathionine beta-synthase

Probab=97.23  E-value=0.00093  Score=55.13  Aligned_cols=54  Identities=17%  Similarity=0.313  Sum_probs=44.2

Q ss_pred             cccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHH
Q 031190           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRK  118 (164)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~  118 (164)
                      +.++.++|..       ++.++.+++++.++++.|.+++   .+||  +++++++|+||.+|+++.
T Consensus       399 ~~~v~~im~~-------~~~~v~~~~~l~~a~~~~~~~~---~~vV--~~~g~liGvvt~~dll~~  452 (454)
T TIGR01137       399 DDAVSKVMSK-------KFIQIGEGEKLSDLSKFLEKNS---SAIV--TEEGKPIGVVTKIDLLSF  452 (454)
T ss_pred             CCCHHHhcCC-------CCeEECCcCcHHHHHHHHHHCC---eeEE--EECCEEEEEEEHHHHHHh
Confidence            3478899976       5889999999999999998753   3445  346899999999999874

Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.

>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=97.01  E-value=0.00075  Score=56.97  Aligned_cols=102  Identities=16%  Similarity=0.153  Sum_probs=78.0

Q ss_pred             ccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCC---CcEEEEEehHHHHHHHHHcC---C-
Q 031190           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ---KSVAGIITERDYLRKIIVQG---R-  124 (164)
Q Consensus        52 ~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~---~~~vGivt~~dil~~~~~~~---~-  124 (164)
                      .+++++|+|.+       +++++..-..+..+++.++.+.++.+||+|..+.   +++.|+|-++.++..+..+.   . 
T Consensus       580 r~L~a~ev~~~-------pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~vlL~~~~f~~~~  652 (762)
T KOG0474|consen  580 RNLTAGEVMSK-------PVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLLVLLKKRVFVEES  652 (762)
T ss_pred             hhhhHhhhccC-------CeEEEechhhHHHHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHHHHHHhhhhhccC
Confidence            57899999998       6999999999999999999999999999952222   57899999999865443220   0 


Q ss_pred             -CC--------------------------------cccccccccccCCCeEEEcCCCCHHHHHHHHHhCCC
Q 031190          125 -SS--------------------------------KSTKVGDIMTEENKLITVSPDTKVLRAMQLMTGHML  162 (164)
Q Consensus       125 -~~--------------------------------~~~~v~~vm~~~~~~~~v~~~~~l~e~~~~m~~~~~  162 (164)
                       ..                                .-..+..+|.+  .+++|++++++..+..++..-++
T Consensus       653 ~~~~~~~~~~~~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~--sPytV~~~mSl~k~~~lFR~lGL  721 (762)
T KOG0474|consen  653 RSTFDLPVRRKFTFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMNP--SPYTVPETMSLAKAFILFRQLGL  721 (762)
T ss_pred             ccccCcchhhcCCHHHhhhcCCchhhhhcchHhHhhccccccccCC--CCcccCcccchHHHHHHHHHhcc
Confidence             00                                01134555666  59999999999999999987554

>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]

Probab=96.43  E-value=0.026  Score=42.61  Aligned_cols=91  Identities=15%  Similarity=0.198  Sum_probs=69.4

Q ss_pred             ccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCC-CC---ccc
Q 031190           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGR-SS---KST  129 (164)
Q Consensus        54 ~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~-~~---~~~  129 (164)
                      ..++++..+        .+.|+.+..+.-.++-|+.+++....|+  |+-|.+-|+||..|++..+.+.-. .+   ...
T Consensus       133 F~i~~lLRP--------av~VPESKrvd~lLkeFR~~RnHMAIVi--DEfGgVsGLVTIEDiLEqIVGdIEDE~Deee~~  202 (293)
T COG4535         133 FDIKELLRP--------AVVVPESKRVDRLLKEFRSQRNHMAIVI--DEFGGVSGLVTIEDILEQIVGDIEDEYDEEEDA  202 (293)
T ss_pred             ccHHHhccc--------ceecccchhHHHHHHHHHhhcCceEEEE--eccCCeeeeEEHHHHHHHHhcccccccchhhhh
Confidence            456677766        8999999999999999999999999999  889999999999999998875411 11   122


Q ss_pred             ccccccccCCCeEEEcCCCCHHHHHHHH
Q 031190          130 KVGDIMTEENKLITVSPDTKVLRAMQLM  157 (164)
Q Consensus       130 ~v~~vm~~~~~~~~v~~~~~l~e~~~~m  157 (164)
                      .+..+-+.   -+.|..=+++++--+.|
T Consensus       203 dI~~ls~~---~~~VrALT~IedFNe~F  227 (293)
T COG4535         203 DIRQLSRH---TWRVRALTEIEDFNEAF  227 (293)
T ss_pred             hhHhhcCC---ceEEEecccHHHHHHHh
Confidence            24444333   67788888887766655

>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]

Probab=96.17  E-value=0.0088  Score=48.41  Aligned_cols=57  Identities=18%  Similarity=0.289  Sum_probs=51.7

Q ss_pred             ccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHH
Q 031190           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (164)
Q Consensus        52 ~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~  117 (164)
                      ....+.++|++       +.++.+.+.++.++-+++.+++...+||+  |++|.++.+|++.|+.+
T Consensus       169 ~~~~~~~vmt~-------~~~~~~~gi~l~~~neiL~~~kkGkl~iv--~~~gelva~~~rtDl~k  225 (503)
T KOG2550|consen  169 NSLLVSDVMTK-------NPVTGAQGITLKEANEILKKIKKGKLPVV--DDKGELVAMLSRTDLMK  225 (503)
T ss_pred             ccchhhhhccc-------ccccccccccHHHHHHHHHhhhcCCccee--ccCCceeeeeehhhhhh
Confidence            35678899998       47889999999999999999999999999  88999999999999965

>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=95.97  E-value=0.016  Score=49.25  Aligned_cols=46  Identities=26%  Similarity=0.268  Sum_probs=43.2

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHH
Q 031190           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (164)
Q Consensus        70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~  117 (164)
                      .+.++.+++++..+..+|++-+..++.|+  +..++.+|++|++|+++
T Consensus       699 sPytV~~~mSl~k~~~lFR~lGLRhLlVv--~~~~~~~gilTR~D~~~  744 (762)
T KOG0474|consen  699 SPYTVPETMSLAKAFILFRQLGLRHLLVV--PKTNRVVGILTRKDLAR  744 (762)
T ss_pred             CCcccCcccchHHHHHHHHHhcceeEEEe--cCCCceeEEEehhhhhh
Confidence            69999999999999999999999999999  77788999999999964

>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes

Probab=95.87  E-value=0.011  Score=40.56  Aligned_cols=30  Identities=37%  Similarity=0.394  Sum_probs=28.5

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEEEEe
Q 031190           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVK   99 (164)
Q Consensus        70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~   99 (164)
                      ++.++.+++++.+|++.|.++++.++||++
T Consensus        87 ~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd  116 (133)
T cd04592          87 GLWTCTPDTDLTTAKKLMEAKGVKQLPVVK  116 (133)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCcCCEec
Confidence            588999999999999999999999999994

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually

>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=95.76  E-value=0.1  Score=44.47  Aligned_cols=104  Identities=15%  Similarity=0.188  Sum_probs=73.1

Q ss_pred             cHHHHhhhcCCCCCCCceEecC-CCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCC---------
Q 031190           55 TISDILKAKGKGADGSWLWCTT-DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGR---------  124 (164)
Q Consensus        55 ~v~dim~~~~~~~~~~~~~v~~-~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~---------  124 (164)
                      -..++|.+...  +.....+.. +.++.+...+|.+..++.+||+-.++.++++|+|.++++.-.+...+.         
T Consensus       544 ~~~~v~~p~~~--~~~L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~~sq~lvGfv~rr~l~~~i~~ar~~q~~~~~~~  621 (696)
T KOG0475|consen  544 LAIPVMEPCRS--ESCLIVITQDSMTLEDLESLMEDTDFSGFPVVLSEDSQRLVGFVLRRNLFLAILNARKIQSFIVTTS  621 (696)
T ss_pred             hhhhhhchhcC--chhheeccccceeHHHHHHHHhhcccCCceEEEccccceeEEEEchHHHHHHHhhhccccccceecc
Confidence            34456655321  001444544 489999999999999999998753456789999999999877663210         


Q ss_pred             -------------CCcccccccccccCCCeEEEcCCCCHHHHHHHHHhCCC
Q 031190          125 -------------SSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTGHML  162 (164)
Q Consensus       125 -------------~~~~~~v~~vm~~~~~~~~v~~~~~l~e~~~~m~~~~~  162 (164)
                                   ......++++|..  .+.++...++.+-++.++++-+.
T Consensus       622 ~~f~~~~~~~~~~~~~~~~lk~il~~--tp~tv~d~tp~~~v~~~F~~lg~  670 (696)
T KOG0475|consen  622 IYFNDPSPSAVAGIPSRLDLKDILDM--TPFTVTDLTPMETVVDLFRKLGL  670 (696)
T ss_pred             cccCCCCccccCCCCCCcCceeeccC--CcccccccCcHHHHHHHHHhhCc
Confidence                         0112246777877  48899999999999999876543

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=95.59  E-value=0.04  Score=44.76  Aligned_cols=47  Identities=11%  Similarity=0.237  Sum_probs=40.3

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHH
Q 031190           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII  120 (164)
Q Consensus        70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~  120 (164)
                      +..++++++++.+++..+.+..+. ++|+  |+ |+++|+|+..+++..+.
T Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~-~~v~--~~-~~~~g~~~~~~~~~~~~  380 (382)
T TIGR03415       334 APTVINPDTLMRDVLAARHRTGGA-ILLV--EN-GRIVGVIGDDNIYHALL  380 (382)
T ss_pred             cCcccCCCCcHHHHHHHHhcCCCC-eEEe--eC-CeEEEEEeHHHHHHHHh
Confidence            478899999999999998887654 8888  54 99999999999988654

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>PF00571 CBS: CBS domain CBS domain web page

Probab=95.28  E-value=0.016  Score=33.26  Aligned_cols=30  Identities=47%  Similarity=0.658  Sum_probs=26.7

Q ss_pred             cccccccCCCeEEEcCCCCHHHHHHHHHhCCC
Q 031190          131 VGDIMTEENKLITVSPDTKVLRAMQLMTGHML  162 (164)
Q Consensus       131 v~~vm~~~~~~~~v~~~~~l~e~~~~m~~~~~  162 (164)
                      ++++|++  +++++++++++.++++.|.++++
T Consensus         1 v~~~m~~--~~~~v~~~~~l~~~~~~~~~~~~   30 (57)
T PF00571_consen    1 VGDIMTP--PPITVSPDDSLEEALEIMRKNGI   30 (57)
T ss_dssp             HHHHSBS--SSEEEETTSBHHHHHHHHHHHTS
T ss_pred             CeECCcC--CCEEEcCcCcHHHHHHHHHHcCC
Confidence            4678998  59999999999999999998875

Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....

>KOG2118 consensus Predicted membrane protein, contains two CBS domains [Function unknown]

Probab=94.66  E-value=0.027  Score=47.28  Aligned_cols=104  Identities=9%  Similarity=0.132  Sum_probs=73.2

Q ss_pred             cccccHHHHhhhcCCCCCCCceEecCCCcHH-HHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCccc
Q 031190           51 FESTTISDILKAKGKGADGSWLWCTTDDTVY-DAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKST  129 (164)
Q Consensus        51 ~~~~~v~dim~~~~~~~~~~~~~v~~~~tl~-~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~  129 (164)
                      +....++++|++-.     ++..+..+..+. +........+++++||++++....+.|++....+ .... ........
T Consensus       201 l~ek~~~evmtpi~-----~~f~l~~n~~l~~~~~~~i~~~g~sripv~~~~~~~~i~~~L~~~~~-~~~~-~~~~~~~~  273 (498)
T KOG2118|consen  201 LTEKLVGEVMTPIE-----DVFALDANTKLDRETVGEIVKHGYSRIPVYEQEPKNKIGGLLVMNLL-RLLQ-VEVPLEPL  273 (498)
T ss_pred             HHHHHHHHhccchh-----hheeeccccccchHHHhhHhhcCcceeeeccCcccchhhHHHHhhhh-hhhc-cccccccc
Confidence            35678899999865     377788888887 5556677899999999953333445554444443 4332 22234566


Q ss_pred             ccccccccCCCeEEEcCCCCHHHHHHHHHhCCCC
Q 031190          130 KVGDIMTEENKLITVSPDTKVLRAMQLMTGHMLL  163 (164)
Q Consensus       130 ~v~~vm~~~~~~~~v~~~~~l~e~~~~m~~~~~~  163 (164)
                      ++.+.+..  ....++.++++.+.+..+...+.|
T Consensus       274 ~v~~~~~~--~l~~vp~~~~~~~~l~~~~~~~~H  305 (498)
T KOG2118|consen  274 PVSESALL--RLPLVPENMPLLDLLNEFQKGKSH  305 (498)
T ss_pred             cchhhhcc--ccccCCCcccHHHHHHHHhhhhce
Confidence            78888888  488999999999999988776543

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=92.81  E-value=0.26  Score=38.05  Aligned_cols=60  Identities=20%  Similarity=0.148  Sum_probs=41.8

Q ss_pred             cccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHH
Q 031190           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (164)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~  117 (164)
                      ..++.+.|..... .  +--.+.....-.+++..+...+.+.+||+  |++|+++|.||..+++.
T Consensus       248 ~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~ls~~~~~~~~~~~Vv--d~~g~~~G~vt~~~l~~  307 (309)
T COG1125         248 LVSVADAVRRGEP-A--DGEPLLEGFVDRDALSDFLARGRSVLPVV--DEDGRPLGTVTRADLLD  307 (309)
T ss_pred             hhhHHHhhccccc-c--cCCccccchhhHHHHHHHHhcCCceeEEE--CCCCcEeeEEEHHHHhh
Confidence            3566666655211 0  11223334455667888888899999999  89999999999999865

>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=91.89  E-value=0.58  Score=40.13  Aligned_cols=55  Identities=24%  Similarity=0.320  Sum_probs=48.4

Q ss_pred             ccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHH
Q 031190           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRK  118 (164)
Q Consensus        54 ~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~  118 (164)
                      ...+++|..       .+.++....+..-+++++++-+...+.|.   .+|++.|+||.+|+++.
T Consensus       639 ~~lk~il~~-------tp~tv~d~tp~~~v~~~F~~lg~~~~~v~---~~G~l~Giitkkd~l~~  693 (696)
T KOG0475|consen  639 LDLKDILDM-------TPFTVTDLTPMETVVDLFRKLGLRQILVT---KNGILLGIITKKDCLRH  693 (696)
T ss_pred             cCceeeccC-------CcccccccCcHHHHHHHHHhhCceEEEEc---cCCeeEeeeehHHHHHh
Confidence            566677766       68999999999999999999999999988   58999999999999874

>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=91.32  E-value=0.23  Score=43.46  Aligned_cols=62  Identities=13%  Similarity=0.220  Sum_probs=52.0

Q ss_pred             cccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHH
Q 031190           51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI  119 (164)
Q Consensus        51 ~~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~  119 (164)
                      ...+.|.++|.+       ++.++..+.|.+|..+.+.......+|+|+.-+.--++|.|.++.+...+
T Consensus       585 ~h~v~VE~iMV~-------dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s~esmiLlGSV~R~~L~~ll  646 (931)
T KOG0476|consen  585 VHTVKVEHIMVT-------DVKYITKDTTYRELREALQTTTLRSFPLVESKESMILLGSVARRYLTALL  646 (931)
T ss_pred             eeEEEeeeeccc-------cceeeeccCcHHHHHHHHHhCccceeccccCcccceeeehhHHHHHHHHH
Confidence            356899999998       79999999999999999998879999999622345689999999985443

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=90.88  E-value=0.72  Score=36.75  Aligned_cols=48  Identities=21%  Similarity=0.304  Sum_probs=40.1

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHH
Q 031190           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII  120 (164)
Q Consensus        70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~  120 (164)
                      .+.++.+++.+.+.+....+.. ..++|+  |++++++|+++...++..+.
T Consensus       336 ~~~~v~~d~~~~~~~~~~~~~~-~p~aVv--de~~r~vG~i~~~~vl~aL~  383 (386)
T COG4175         336 DVLTVDADTPLSEILARIRQAP-CPVAVV--DEDGRYVGIISRGELLEALA  383 (386)
T ss_pred             cccccCccchHHHHHHHHhcCC-CceeEE--cCCCcEEEEecHHHHHHHHh
Confidence            4778889999999888887754 468899  89999999999999988664

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=88.95  E-value=1.3  Score=36.16  Aligned_cols=84  Identities=11%  Similarity=0.009  Sum_probs=54.2

Q ss_pred             cccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCcccccc
Q 031190           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVG  132 (164)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~v~  132 (164)
                      -.++.++|.+        ...+...+.. .+++.   ++.+.++|+  |.     |+++..+.......    .....+.
T Consensus       273 ~l~a~~~m~~--------~~~~~~~~~~-~~~~~---~~~~~~~~~--~~-----~~~~~~~~~~~~~~----~~~~~~~  329 (382)
T TIGR03415       273 VLTARSLMRP--------LTDLEHVDGG-WCVSD---RRDTWLFTI--DK-----QVRRRDAKLPVQAW----AAEQEVE  329 (382)
T ss_pred             ceeHHHHhcc--------cccccccCcc-hhhhh---cccceeEee--cc-----ceecccchHhHhhc----ccccchh
Confidence            3688889954        3333323333 44443   688999999  54     89988886432211    1223466


Q ss_pred             cccccCCCeEEEcCCCCHHHHHHHHHhCCC
Q 031190          133 DIMTEENKLITVSPDTKVLRAMQLMTGHML  162 (164)
Q Consensus       133 ~vm~~~~~~~~v~~~~~l~e~~~~m~~~~~  162 (164)
                      + +..  ...++++++++.+++..+.....
T Consensus       330 ~-~~~--~~~~~~~~~~~~~~~~~~~~~~~  356 (382)
T TIGR03415       330 S-LEA--APTVINPDTLMRDVLAARHRTGG  356 (382)
T ss_pred             h-hcc--cCcccCCCCcHHHHHHHHhcCCC
Confidence            6 445  38899999999999998877653

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=85.53  E-value=1.8  Score=38.15  Aligned_cols=48  Identities=13%  Similarity=0.194  Sum_probs=42.6

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHH
Q 031190           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIV  121 (164)
Q Consensus        70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~  121 (164)
                      .+..+.+.+|+.++-.+|.--+.+..+|.   +-|+++|+|..+++ ++++.
T Consensus       811 aPfQLve~TSL~K~HtLFSLLgL~~AYVT---~~GrLvGVValkEL-RkAie  858 (931)
T KOG0476|consen  811 APFQLVEGTSLYKVHTLFSLLGLNHAYVT---SCGRLVGVVALKEL-RKAIE  858 (931)
T ss_pred             CceeeeccchHHHHHHHHHHhccchhhhc---ccCcEEEEEEHHHH-HHHHH
Confidence            67888899999999999999999999999   57999999999998 54443

>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=82.92  E-value=1.4  Score=28.85  Aligned_cols=32  Identities=28%  Similarity=0.539  Sum_probs=28.1

Q ss_pred             cccccccccCCCeEEEcCCCCHHHHHHHHHhCCC
Q 031190          129 TKVGDIMTEENKLITVSPDTKVLRAMQLMTGHML  162 (164)
Q Consensus       129 ~~v~~vm~~~~~~~~v~~~~~l~e~~~~m~~~~~  162 (164)
                      .++.++|.+  ++.++++++++.++++.|.+++.
T Consensus        58 ~~v~dim~~--~~~~v~~~~~l~~a~~~~~~~~~   89 (113)
T cd04597          58 PRVRDVINR--KPVTARPNDPLREALNLMHEHNI   89 (113)
T ss_pred             hhHHHhcCC--CCCEECCcCcHHHHHHHHHHcCC
Confidence            568999988  58899999999999999987764

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	164
4fry_A	157	The Structure Of A Putative Signal-Transduction Pro		1e-16
2rc3_A	135	Crystal Structure Of Cbs Domain, Ne2398 Length = 13		2e-07
1vrd_A	494	Crystal Structure Of Inosine-5'-Monophosphate Dehyd		9e-06

>pdb|4FRY|A Chain A, The Structure Of A Putative Signal-Transduction Protein With Cbs Domains From Burkholderia Ambifaria Mc40-6 Length = 157

Iteration: 1
 Score = 82.4 bits (202), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 51/114 (44%), Positives = 71/114 (62%), Gaps = 8/114 (7%)
Query: 50  GFESTTISDILKAKGKGADGSWLWCTT-DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAG 108
           G  STT++ ILKAK     G  ++  T +D VYDA+K M +  +GAL+VV   +   +AG
Sbjct: 3   GSMSTTVAQILKAKPDS--GRTIYTVTKNDFVYDAIKLMAEKGIGALLVV---DGDDIAG 57
Query: 109 IITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTGHML 162
           I+TERDY RK+++Q RSSK+T+V +IMT   K+  V P       M LMT H +
Sbjct: 58  IVTERDYARKVVLQERSSKATRVEEIMT--AKVRYVEPSQSTDECMALMTEHRM 109

>pdb|2RC3|A Chain A, Crystal Structure Of Cbs Domain, Ne2398 Length = 135

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 51/84 (60%), Gaps = 7/84 (8%)
Query: 55  TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERD 114
           T+  +L+ KG     + +    DD+V++A++ M   N+GAL+V+K    + + GI+TERD
Sbjct: 7   TVKHLLQEKGH----TVVAIGPDDSVFNAMQKMAADNIGALLVMK---DEKLVGILTERD 59
Query: 115 YLRKIIVQGRSSKSTKVGDIMTEE 138
           + RK  +  +  K T+V +IMT +
Sbjct: 60  FSRKSYLLDKPVKDTQVKEIMTRQ 83

>pdb|1VRD|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate Dehydrogenase (Tm1347) From Thermotoga Maritima At 2.18 A Resolution Length = 494

Iteration: 1
 Score = 46.2 bits (108), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 8/91 (8%)
Query: 72  LWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKV 131
           +  T D TV +A+  M ++ +G L VV   E+  + G++T RD      V+   + S K+
Sbjct: 106 ITVTPDMTVKEAIDLMAEYKIGGLPVVD--EEGRLVGLLTNRD------VRFEKNLSKKI 157
Query: 132 GDIMTEENKLITVSPDTKVLRAMQLMTGHML 162
            D+MT   KLI   PD  + +A +++  H +
Sbjct: 158 KDLMTPREKLIVAPPDISLEKAKEILHQHRI 188

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	164
4fry_A	157	Putative signal-transduction protein with CBS DOM;	4e-31
4fry_A	157	Putative signal-transduction protein with CBS DOM;	5e-05
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	5e-31
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	3e-04
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	1e-29
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	2e-05
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	1e-26
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	1e-05
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	4e-24
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	5e-07
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	7e-24
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	1e-05
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	2e-23
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	6e-06
1pvm_A	184	Conserved hypothetical protein TA0289; structural	3e-23
1pvm_A	184	Conserved hypothetical protein TA0289; structural	9e-05
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	2e-21
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	7e-07
1pbj_A	125	Hypothetical protein; structural genomics, domain,	3e-21
1pbj_A	125	Hypothetical protein; structural genomics, domain,	1e-06
3fio_A	70	A cystathionine beta-synthase domain protein fused	8e-20
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	2e-17
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	4e-15
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	1e-05
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	4e-15
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	6e-05
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	5e-15
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	3e-05
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	3e-05
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	8e-15
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	2e-04
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	2e-14
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	5e-14
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	6e-04
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	5e-14
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	9e-14
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	2e-13
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	3e-13
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	7e-13
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	2e-12
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	1e-06
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	9e-13
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	2e-05
3ddj_A	296	CBS domain-containing protein; structural genomics	2e-12
3ddj_A	296	CBS domain-containing protein; structural genomics	1e-11
3ddj_A	296	CBS domain-containing protein; structural genomics	2e-11
3ddj_A	296	CBS domain-containing protein; structural genomics	1e-06
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	2e-11
1vr9_A	213	CBS domain protein/ACT domain protein; structural	3e-11
1vr9_A	213	CBS domain protein/ACT domain protein; structural	2e-04
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	5e-11
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	7e-11
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	2e-07
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	7e-07
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	2e-06
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	8e-11
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	1e-10
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	1e-10
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	2e-10
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	1e-08
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	7e-07
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	2e-10
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	4e-09
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	3e-05
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	6e-10
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	8e-10
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	2e-04
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	2e-04
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	8e-10
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	1e-09
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	1e-09
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	1e-09
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	1e-08
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	1e-06
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	3e-05

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria} Length = 157

 Score =  108 bits (273), Expect = 4e-31
 Identities = 50/111 (45%), Positives = 69/111 (62%), Gaps = 6/111 (5%)

Query: 50  GFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGI 109
           G  STT++ ILKAK   +  +    T +D VYDA+K M +  +GAL+VV   +   +AGI
Sbjct: 3   GSMSTTVAQILKAK-PDSGRTIYTVTKNDFVYDAIKLMAEKGIGALLVVDGDD---IAGI 58

Query: 110 ITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTGH 160
           +TERDY RK+++Q RSSK+T+V +IMT   K+  V P       M LMT H
Sbjct: 59  VTERDYARKVVLQERSSKATRVEEIMTA--KVRYVEPSQSTDECMALMTEH 107

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria} Length = 157

 Score = 40.3 bits (95), Expect = 5e-05
 Identities = 10/48 (20%), Positives = 24/48 (50%), Gaps = 3/48 (6%)

Query: 73  WCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII 120
           +     +  + +  MT+H +  L V+  G+   + G+I+  D ++ +I
Sbjct: 90  YVEPSQSTDECMALMTEHRMRHLPVLDGGK---LIGLISIGDLVKSVI 134

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str} Length = 165

 Score =  108 bits (273), Expect = 5e-31
 Identities = 30/126 (23%), Positives = 54/126 (42%), Gaps = 8/126 (6%)

Query: 35  SSRFESVSSARMEEHGFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGA 94
                  S          +T + D+L  KG+      +    D ++ +A  ++  H +GA
Sbjct: 5   HHHHHHSSGRENLYFQGMATFVKDLLDRKGRDV----VTVGPDVSIGEAAGTLHAHKIGA 60

Query: 95  LVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAM 154
           +VV        V GI TERD ++ +  QG +S    V   MT+   ++    ++   + M
Sbjct: 61  VVVT--DADGVVLGIFTERDLVKAVAGQGAASLQQSVSVAMTK--NVVRCQHNSTTDQLM 116

Query: 155 QLMTGH 160
           ++MTG 
Sbjct: 117 EIMTGG 122

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str} Length = 165

 Score = 38.4 bits (90), Expect = 3e-04
 Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 3/47 (6%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII 120
           C  + T    ++ MT      + V + G    +AGII+  D ++  I
Sbjct: 106 CQHNSTTDQLMEIMTGGRFRHVPVEENGR---LAGIISIGDVVKARI 149

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1 Length = 135

 Score =  104 bits (262), Expect = 1e-29
 Identities = 33/107 (30%), Positives = 58/107 (54%), Gaps = 9/107 (8%)

Query: 54  TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITER 113
            T+  +L+ KG     + +    DD+V++A++ M   N+GAL+V+K  +   + GI+TER
Sbjct: 6   KTVKHLLQEKGH----TVVAIGPDDSVFNAMQKMAADNIGALLVMKDEK---LVGILTER 58

Query: 114 DYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTGH 160
           D+ RK  +  +  K T+V +IMT   ++  V  +      M L+T  
Sbjct: 59  DFSRKSYLLDKPVKDTQVKEIMTR--QVAYVDLNNTNEDCMALITEM 103

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1 Length = 135

 Score = 41.1 bits (97), Expect = 2e-05
 Identities = 11/49 (22%), Positives = 24/49 (48%), Gaps = 3/49 (6%)

Query: 72  LWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII 120
            +   ++T  D +  +T+  V  L V+  G+   V G+++  D ++  I
Sbjct: 85  AYVDLNNTNEDCMALITEMRVRHLPVLDDGK---VIGLLSIGDLVKDAI 130

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A Length = 133

 Score = 96.5 bits (241), Expect = 1e-26
 Identities = 17/88 (19%), Positives = 41/88 (46%), Gaps = 4/88 (4%)

Query: 73  WCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVG 132
                +T+  A + M +H++GAL +    ++  + G++T+RD + K +  G    +   G
Sbjct: 20  CVGEHETLTAAAQYMREHDIGALPICGDDDR--LHGMLTDRDIVIKGLAAGLDPNTATAG 77

Query: 133 DIMTEENKLITVSPDTKVLRAMQLMTGH 160
           ++  +   +  V  +  +   + +M  H
Sbjct: 78  ELARDS--IYYVDANASIQEMLNVMEEH 103

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A Length = 133

 Score = 41.4 bits (98), Expect = 1e-05
 Identities = 10/48 (20%), Positives = 22/48 (45%), Gaps = 3/48 (6%)

Query: 73  WCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII 120
           +   + ++ + +  M +H V  + V+       + GI+TE D  R + 
Sbjct: 86  YVDANASIQEMLNVMEEHQVRRVPVISEHR---LVGIVTEADIARHLP 130

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A Length = 141

 Score = 90.4 bits (225), Expect = 4e-24
 Identities = 23/111 (20%), Positives = 38/111 (34%), Gaps = 12/111 (10%)

Query: 50  GFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGI 109
           G  +   S++LK          +      T+ +    + ++ VG  V+      K    +
Sbjct: 1   GAMAIRTSELLKRPP-------VSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAV 53

Query: 110 ITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTGH 160
           ++ERD LR +    R         I       ITV     V  A + M  H
Sbjct: 54  VSERDILRAVA--QRLDLDGPAMPIAN---SPITVLDTDPVHVAAEKMRRH 99

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A Length = 141

 Score = 45.7 bits (109), Expect = 5e-07
 Identities = 21/121 (17%), Positives = 43/121 (35%), Gaps = 29/121 (23%)

Query: 29  MLRPVVS-SRFESVSSA--RMEEHGFEST---------------TISDILKAKGKGADGS 70
           + RP VS     ++      + ++                    +  DIL+A  +  D  
Sbjct: 11  LKRPPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQRLDLD 70

Query: 71  W---------LWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIV 121
                     +     D V+ A + M +HN+  +VVV   +   + G+++ RD   +  +
Sbjct: 71  GPAMPIANSPITVLDTDPVHVAAEKMRRHNIRHVVVV--NKNGELVGVLSIRDLCFERAI 128

Query: 122 Q 122
            
Sbjct: 129 L 129

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1 Length = 138

 Score = 89.6 bits (223), Expect = 7e-24
 Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 5/89 (5%)

Query: 72  LWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKV 131
           L      +V +A + M + +VG+LVV+   +  +V G  T+ D +R++IV G       V
Sbjct: 18  LGVKPSTSVQEASRLMMEFDVGSLVVIN--DDGNVVGFFTKSDIIRRVIVPGLPY-DIPV 74

Query: 132 GDIMTEENKLITVSPDTKVLRAMQLMTGH 160
             IMT    LIT + +T +   ++ M  H
Sbjct: 75  ERIMTR--NLITANVNTPLGEVLRKMAEH 101

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1 Length = 138

 Score = 41.8 bits (99), Expect = 1e-05
 Identities = 8/50 (16%), Positives = 22/50 (44%), Gaps = 3/50 (6%)

Query: 73  WCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQ 122
               +  + + ++ M +H +  +++ + G+   + GI T  D L     +
Sbjct: 84  TANVNTPLGEVLRKMAEHRIKHILIEEEGK---IVGIFTLSDLLEASRRR 130

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A* Length = 159

 Score = 88.9 bits (221), Expect = 2e-23
 Identities = 19/87 (21%), Positives = 37/87 (42%), Gaps = 3/87 (3%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGD 133
              + +VYDA+ +M   +VG L VV       + G+++ +D L +  +  +   S  V  
Sbjct: 29  IHENVSVYDAICTMFLEDVGTLFVV--DRDAVLVGVLSRKD-LLRASIGQQELTSVPVHI 85

Query: 134 IMTEENKLITVSPDTKVLRAMQLMTGH 160
           IMT    +     +  V+   + +   
Sbjct: 86  IMTRMPNITVCRREDYVMDIAKHLIEK 112

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A* Length = 159

 Score = 43.1 bits (102), Expect = 6e-06
 Identities = 21/121 (17%), Positives = 40/121 (33%), Gaps = 29/121 (23%)

Query: 29  MLRPVVSSRFESVSSAR--MEEHGFEST-------------TISDILKAKGKGADGSWL- 72
              PVV     SV  A   M      +              +  D+L+A     + + + 
Sbjct: 23  QSIPVVIHENVSVYDAICTMFLEDVGTLFVVDRDAVLVGVLSRKDLLRASIGQQELTSVP 82

Query: 73  ------------WCTTDDTVYDAVKSMTQHNVGAL-VVVKPGEQKSVAGIITERDYLRKI 119
                        C  +D V D  K + +  + AL V+    +   V G +T+ +  + +
Sbjct: 83  VHIIMTRMPNITVCRREDYVMDIAKHLIEKQIDALPVIKDTDKGFEVIGRVTKTNMTKIL 142

Query: 120 I 120
           +
Sbjct: 143 V 143

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A Length = 184

 Score = 89.4 bits (222), Expect = 3e-23
 Identities = 18/87 (20%), Positives = 41/87 (47%), Gaps = 4/87 (4%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGD 133
              + TV+DAVK M ++++  LVV    +  +  G+++ER  +++ I + +      +  
Sbjct: 22  VNWNTTVFDAVKIMNENHLYGLVVKD--DNGNDVGLLSERSIIKRFIPRNKKPDEVPIRL 79

Query: 134 IMTEENKLITVSPDTKVLRAMQLMTGH 160
           +M +   +  V  D  V      ++ +
Sbjct: 80  VMRK--PIPKVKSDYDVKDVAAYLSEN 104

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A Length = 184

 Score = 40.1 bits (94), Expect = 9e-05
 Identities = 11/47 (23%), Positives = 20/47 (42%), Gaps = 2/47 (4%)

Query: 73  WCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI 119
              +D  V D    ++++ +    VV   +   V GI+T  D  R +
Sbjct: 87  KVKSDYDVKDVAAYLSENGLERCAVVD--DPGRVVGIVTLTDLSRYL 131

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1 Length = 133

 Score = 83.0 bits (206), Expect = 2e-21
 Identities = 32/87 (36%), Positives = 48/87 (55%), Gaps = 7/87 (8%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGD 133
            T D  + D  K MT+ N+G+++VV   +     GIITERD + K I +G+S + TK  +
Sbjct: 17  VTKDAKLNDIAKVMTEKNIGSVIVVDGNK---PVGIITERD-IVKAIGKGKSLE-TKAEE 71

Query: 134 IMTEENKLITVSPDTKVLRAMQLMTGH 160
            MT    LIT+  D+ +  A+ LM   
Sbjct: 72  FMTA--SLITIREDSPITGALALMRQF 96

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1 Length = 133

 Score = 44.9 bits (107), Expect = 7e-07
 Identities = 29/117 (24%), Positives = 44/117 (37%), Gaps = 27/117 (23%)

Query: 29  MLRPVVS-SRFESVSSA--RMEEHGFEST------------TISDILKAKGKGADGSW-- 71
           M   V+S ++   ++     M E    S             T  DI+KA GKG       
Sbjct: 10  MKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVDGNKPVGIITERDIVKAIGKGKSLETKA 69

Query: 72  --------LWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII 120
                   +    D  +  A+  M Q N+  L VV   ++ ++ GII+ RD  R I 
Sbjct: 70  EEFMTASLITIREDSPITGALALMRQFNIRHLPVVD--DKGNLKGIISIRDITRAID 124

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1 Length = 125

 Score = 82.6 bits (205), Expect = 3e-21
 Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 6/87 (6%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGD 133
                ++ D +++  ++  G+ VVVK G      GI+T  D + + I +G      KV +
Sbjct: 14  IDITASLEDVLRNYVENAKGSSVVVKEGV---RVGIVTTWD-VLEAIAEGDDLAEVKVWE 69

Query: 134 IMTEENKLITVSPDTKVLRAMQLMTGH 160
           +M     L+T+SP   +  A + M  +
Sbjct: 70  VMER--DLVTISPRATIKEAAEKMVKN 94

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1 Length = 125

 Score = 44.4 bits (106), Expect = 1e-06
 Identities = 23/118 (19%), Positives = 45/118 (38%), Gaps = 29/118 (24%)

Query: 29  MLRPVVS-SRFESVSSA--RMEEHGFEST------------TISDILKAKGKGADGSWL- 72
           M+  V +     S+        E+   S+            T  D+L+A  +G D + + 
Sbjct: 7   MVTDVDTIDITASLEDVLRNYVENAKGSSVVVKEGVRVGIVTTWDVLEAIAEGDDLAEVK 66

Query: 73  ----------WCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII 120
                       +   T+ +A + M ++ V  L+V +  E   + G+I+  D LR  +
Sbjct: 67  VWEVMERDLVTISPRATIKEAAEKMVKNVVWRLLVEEDDE---IIGVISATDILRAKM 121

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} Length = 138

 Score = 73.0 bits (180), Expect = 2e-17
 Identities = 21/84 (25%), Positives = 47/84 (55%), Gaps = 5/84 (5%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGD 133
               + V +A + M ++ + +L V+   ++  V GI+T  D +   +++ + +  T +GD
Sbjct: 21  AKRHEGVVEAFEKMLKYKISSLPVID--DENKVIGIVTTTD-IGYNLIRDKYTLETTIGD 77

Query: 134 IMTEENKLITVSPDTKVLRAMQLM 157
           +MT++  +IT+  D  +L A++ M
Sbjct: 78  VMTKD--VITIHEDASILEAIKKM 99

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A Length = 144

 Score = 67.2 bits (165), Expect = 4e-15
 Identities = 16/91 (17%), Positives = 34/91 (37%), Gaps = 6/91 (6%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGD 133
           C     V D ++ +TQ  V ++ ++   E   +  +    D L  I     +  S  VG+
Sbjct: 24  CQMTTPVIDVIQMLTQGRVSSVPII--DENGYLINVYEAYDVLGLIKGGIYNDLSLSVGE 81

Query: 134 IMTEEN----KLITVSPDTKVLRAMQLMTGH 160
            +   +     + T + + K+   M  +   
Sbjct: 82  ALMRRSDDFEGVYTCTKNDKLSTIMDNIRKA 112

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A Length = 144

 Score = 41.8 bits (99), Expect = 1e-05
 Identities = 14/69 (20%), Positives = 32/69 (46%), Gaps = 3/69 (4%)

Query: 53  STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITE 112
           S ++ + L  +    +G    CT +D +   + ++ +  V    VV   +   + G++T 
Sbjct: 76  SLSVGEALMRRSDDFEGV-YTCTKNDKLSTIMDNIRKARVHRFFVV--DDVGRLVGVLTL 132

Query: 113 RDYLRKIIV 121
            D L+ I++
Sbjct: 133 SDILKYILL 141

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1 Length = 160

 Score = 67.3 bits (165), Expect = 4e-15
 Identities = 17/94 (18%), Positives = 37/94 (39%), Gaps = 11/94 (11%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR-------KIIVQGRSS 126
                T+ DA   M   ++  + +V     K + GI+++RD L        +       +
Sbjct: 18  LLRTHTLNDAKHLMEALDIRHVPIVD--ANKKLLGIVSQRDLLAAQESSLQRSAQGDSLA 75

Query: 127 KSTKVGDIMTEENKLITVSPDTKVLRAMQLMTGH 160
             T + ++M  +  + +V+P   +  +   M  H
Sbjct: 76  FETPLFEVMHTD--VTSVAPQAGLKESAIYMQKH 107

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1 Length = 160

 Score = 40.0 bits (94), Expect = 6e-05
 Identities = 13/62 (20%), Positives = 28/62 (45%), Gaps = 3/62 (4%)

Query: 77  DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMT 136
              + ++   M +H +G L VV       + GIIT+ D++   I      + ++  ++  
Sbjct: 94  QAGLKESAIYMQKHKIGCLPVVAKDV---LVGIITDSDFVTIAINLLELQEESEPDELDE 150

Query: 137 EE 138
           E+
Sbjct: 151 EQ 152

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana} Length = 180

 Score = 67.8 bits (166), Expect = 5e-15
 Identities = 21/113 (18%), Positives = 40/113 (35%), Gaps = 30/113 (26%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKS----- 128
                +V DA++ + +  V  L V+   +  ++ G++++ D L    + GRS        
Sbjct: 19  VKPSTSVDDALELLVEKKVTGLPVI--DDNWTLVGVVSDYDLLALDSISGRSQNDTNLFP 76

Query: 129 ---------------------TKVGDIMTEENKLITVSPDTKVLRAMQLMTGH 160
                                  VGD+MT     + V   T +  A +L+   
Sbjct: 77  DVDSTWKTFNELQKLISKTYGKVVGDLMTPS--PLVVRDSTNLEDAARLLLET 127

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana} Length = 180

 Score = 41.3 bits (97), Expect = 3e-05
 Identities = 12/31 (38%), Positives = 15/31 (48%)

Query: 130 KVGDIMTEENKLITVSPDTKVLRAMQLMTGH 160
            VGD MT    L  V P T V  A++L+   
Sbjct: 5   TVGDFMTPRQNLHVVKPSTSVDDALELLVEK 35

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana} Length = 180

 Score = 41.3 bits (97), Expect = 3e-05
 Identities = 18/130 (13%), Positives = 43/130 (33%), Gaps = 9/130 (6%)

Query: 8   FLSHGNIVKSAVLQRIRLVNPMLRPVVSSRFESVSSARMEEHGFESTTISDILKAKGKGA 67
            +S  +++    +      +  L P V S +++ +  +          + D++       
Sbjct: 52  VVSDYDLLALDSISGRSQNDTNLFPDVDSTWKTFNELQKLISKTYGKVVGDLMTPSP--- 108

Query: 68  DGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSK 127
               L       + DA + + +     L VV       + GI+T  + +R  +   R++ 
Sbjct: 109 ----LVVRDSTNLEDAARLLLETKFRRLPVVD--ADGKLIGILTRGNVVRAALQIKRNAD 162

Query: 128 STKVGDIMTE 137
           S         
Sbjct: 163 SISGRSQNDT 172

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} PDB: 3kpd_A* 3kpc_A* Length = 122

 Score = 65.6 bits (161), Expect = 8e-15
 Identities = 20/84 (23%), Positives = 37/84 (44%), Gaps = 9/84 (10%)

Query: 77  DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMT 136
           + ++ +A K + +HN+  L +V   E   + GIIT  D  + +     +     + +IMT
Sbjct: 17  NISIMEAAKILIKHNINHLPIVD--EHGKLVGIITSWDIAKAL-----AQNKKTIEEIMT 69

Query: 137 EENKLITVSPDTKVLRAMQLMTGH 160
               +IT   D  V      M+ +
Sbjct: 70  R--NVITAHEDEPVDHVAIKMSKY 91

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} PDB: 3kpd_A* 3kpc_A* Length = 122

 Score = 38.3 bits (90), Expect = 2e-04
 Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 2/43 (4%)

Query: 77  DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI 119
           D+ V      M+++N+  + VV   + + V GI+T  D  R  
Sbjct: 78  DEPVDHVAIKMSKYNISGVPVVD--DYRRVVGIVTSEDISRLF 118

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1 Length = 157

 Score = 64.6 bits (158), Expect = 5e-14
 Identities = 16/101 (15%), Positives = 31/101 (30%), Gaps = 19/101 (18%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRS-------- 125
              D  + + V  + +  V   V V       + G+I     L+                
Sbjct: 29  VEEDTPIEEIVDRILEDPVTRTVYV--ARDNKLVGMIPVMHLLKVSGFHFFGFIPKEELI 86

Query: 126 ------SKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTGH 160
                   +    +IM +    + V  DT +  A++LM  +
Sbjct: 87  RSSMKRLIAKNASEIMLDP---VYVHMDTPLEEALKLMIDN 124

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1 Length = 157

 Score = 37.3 bits (87), Expect = 6e-04
 Identities = 10/43 (23%), Positives = 21/43 (48%), Gaps = 2/43 (4%)

Query: 77  DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI 119
           D  + +A+K M  +N+  + VV   E+  + G +   + L  +
Sbjct: 111 DTPLEEALKLMIDNNIQEMPVVD--EKGEIVGDLNSLEILLAL 151

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus} Length = 157

 Score = 64.8 bits (158), Expect = 5e-14
 Identities = 15/95 (15%), Positives = 39/95 (41%), Gaps = 8/95 (8%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSS----KST 129
               + +  A+  +T+    A+ V+       + G+I+    +  I+   R      ++ 
Sbjct: 26  VQPGNYLDHALLVLTKTGYSAIPVL--DTSYKLHGLISMTMMMDAILGLERIEFERLETM 83

Query: 130 KVGDIMTEENKLITVSPDTKVLRAMQLMTGHMLLP 164
           KV ++M     +  +  D  +++A+ L+  H  + 
Sbjct: 84  KVEEVMNRN--IPRLRLDDSLMKAVGLIVNHPFVC 116

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} Length = 150

 Score = 64.0 bits (156), Expect = 9e-14
 Identities = 13/95 (13%), Positives = 34/95 (35%), Gaps = 8/95 (8%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSS----KST 129
               + +  A+  + +    A+ V+       + G+I+    L  I+   R      +  
Sbjct: 30  VQIGNGLEHALLVLVKSGYSAIPVL--DPMYKLHGLISTAMILDGILGLERIEFERLEEM 87

Query: 130 KVGDIMTEENKLITVSPDTKVLRAMQLMTGHMLLP 164
           KV  +M     +  +  +    +A+++   H  + 
Sbjct: 88  KVEQVMK--QDIPVLKLEDSFAKALEMTIDHPFIC 120

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1 Length = 159

 Score = 63.2 bits (154), Expect = 2e-13
 Identities = 11/95 (11%), Positives = 34/95 (35%), Gaps = 8/95 (8%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSS----KST 129
               + +  A+  +T+    A+ V+ P  +  + G+I     +  I    R         
Sbjct: 29  VQVGNNLEHALLVLTKTGYTAIPVLDPSYR--LHGLIGTNMIMNSIFGLERIEFEKLDQI 86

Query: 130 KVGDIMTEENKLITVSPDTKVLRAMQLMTGHMLLP 164
            V ++M     +  +  +  +++   ++  +  + 
Sbjct: 87  TVEEVMLT--DIPRLHINDPIMKGFGMVINNGFVC 119

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280

 Score = 64.4 bits (157), Expect = 3e-13
 Identities = 26/165 (15%), Positives = 55/165 (33%), Gaps = 41/165 (24%)

Query: 29  MLRPVVS-SRFESVSSA--RMEEHGFEST-------------TISDILKAKGKGADGSW- 71
           M   V++      +  A                         T  D+++A     D +  
Sbjct: 90  MEENVITLKENADIDEAIETFLTKNVGGAPIVNDENQLISLITERDVIRALLDKIDENEV 149

Query: 72  ---------LWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI--- 119
                    +  T  + + D  ++M ++    L VV  G    + GIIT  D+++ +   
Sbjct: 150 IDDYITRDVIVATPGERLKDVARTMVRNGFRRLPVVSEGR---LVGIITSTDFIKLLGSD 206

Query: 120 -------IVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLM 157
                      R   + ++ +IM  +  +IT     K+ +  ++M
Sbjct: 207 WAFNHMQTGNVREITNVRMEEIMKRD--VITAKEGDKLKKIAEIM 249

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280

 Score = 63.6 bits (155), Expect = 7e-13
 Identities = 16/84 (19%), Positives = 42/84 (50%), Gaps = 6/84 (7%)

Query: 77  DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMT 136
           +  + +A+++    NVG   +V   ++  +  +ITERD +R ++ +    ++  + D +T
Sbjct: 100 NADIDEAIETFLTKNVGGAPIVN--DENQLISLITERDVIRALLDKID--ENEVIDDYIT 155

Query: 137 EENKLITVSPDTKVLRAMQLMTGH 160
            +  +I  +P  ++    + M  +
Sbjct: 156 RD--VIVATPGERLKDVARTMVRN 177

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280

 Score = 62.5 bits (152), Expect = 2e-12
 Identities = 21/97 (21%), Positives = 38/97 (39%), Gaps = 16/97 (16%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRS-------- 125
                T+  A+ +M ++    L VV  G  K V GIIT  D +  +    +         
Sbjct: 17  VYPTTTIRKALMTMNENKYRRLPVVNAGNNK-VVGIITSMDIVDFMGGGSKYNLIREKHE 75

Query: 126 -----SKSTKVGDIMTEENKLITVSPDTKVLRAMQLM 157
                + +  V +IM E   +IT+  +  +  A++  
Sbjct: 76  RNFLAAINEPVREIMEEN--VITLKENADIDEAIETF 110

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280

 Score = 45.5 bits (108), Expect = 1e-06
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 2/46 (4%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI 119
               D +    + M  +++GAL VV   E   + GIITE+D L+  
Sbjct: 236 AKEGDKLKKIAEIMVTNDIGALPVVD--ENLRIKGIITEKDVLKYF 279

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1 Length = 296

 Score = 62.1 bits (151), Expect = 2e-12
 Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 7/84 (8%)

Query: 77  DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMT 136
               + A+  M   N G+L VV   ++    GI+TER++L          +   V   M+
Sbjct: 109 TSDEFTAINIMVTRNFGSLPVVDINDK--PVGIVTEREFLLLYK---DLDEIFPVKVFMS 163

Query: 137 EENKLITVSPDTKVLRAMQLMTGH 160
              K+ T+  + ++ +A++LM   
Sbjct: 164 T--KVQTIYKEVRLDQAVKLMLRR 185

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1 Length = 296

 Score = 60.2 bits (146), Expect = 1e-11
 Identities = 19/89 (21%), Positives = 34/89 (38%), Gaps = 9/89 (10%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI-----IVQGRSSKS 128
              +  +  AVK M +     L V+   +   V GI+T  + ++++      +       
Sbjct: 169 IYKEVRLDQAVKLMLRRGFRRLPVID--DDNKVVGIVTVVNAIKQLAKAVDKLDPDYFYG 226

Query: 129 TKVGDIMTEENKLITVSPDTKVLRAMQLM 157
             V D+M     L+T+     V RA   M
Sbjct: 227 KVVKDVMVTN--LVTIDELASVNRAAAEM 253

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1 Length = 296

 Score = 59.4 bits (144), Expect = 2e-11
 Identities = 19/96 (19%), Positives = 39/96 (40%), Gaps = 15/96 (15%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSK------ 127
            + +D +  A K + +  +G ++V      + + G++T RD L  +    + S       
Sbjct: 33  LSKEDRLGSAFKKINEGGIGRIIVAN----EKIEGLLTTRDLLSTVESYCKDSCSQGDLY 88

Query: 128 ---STKVGDIMTEENKLITVSPDTKVLRAMQLMTGH 160
              +T + D MT     +TV   +    A+ +M   
Sbjct: 89  HISTTPIIDYMTPN--PVTVYNTSDEFTAINIMVTR 122

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1 Length = 296

 Score = 45.9 bits (109), Expect = 1e-06
 Identities = 23/125 (18%), Positives = 40/125 (32%), Gaps = 35/125 (28%)

Query: 29  MLRPVVS-SRFESVSSAR--MEEHGFES-------------TTISDILKAKGKGADGS-- 70
           M   V +  +   +  A   M   GF                T+ + +K   K  D    
Sbjct: 162 MSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQLAKAVDKLDP 221

Query: 71  ---------------WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDY 115
                           +      +V  A   M    +G+L+++   +  ++ GIITERD 
Sbjct: 222 DYFYGKVVKDVMVTNLVTIDELASVNRAAAEMIVKRIGSLLIL--NKDNTIRGIITERDL 279

Query: 116 LRKII 120
           L  + 
Sbjct: 280 LIALH 284

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A* Length = 511

 Score = 59.8 bits (146), Expect = 2e-11
 Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 7/87 (8%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGD 133
            T +  VYDA   M ++ +  + VV   +++ + GIIT RD +R I        S K+ D
Sbjct: 126 LTPEHQVYDAEHLMGKYRISGVPVVNNLDERKLVGIITNRD-MRFI-----QDYSIKISD 179

Query: 134 IMTEENKLITVSPDTKVLRAMQLMTGH 160
           +MT+E  LIT    T +  A +++  +
Sbjct: 180 VMTKEQ-LITAPVGTTLSEAEKILQKY 205

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1 Length = 213

 Score = 58.2 bits (141), Expect = 3e-11
 Identities = 13/87 (14%), Positives = 29/87 (33%), Gaps = 11/87 (12%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGD 133
                TV + +  M Q+     +V     +    G++ + D L            + V +
Sbjct: 26  VEESATVRECLHRMRQYQTNECIVKD--REGHFRGVVNKEDLLDL-------DLDSSVFN 76

Query: 134 IMTEENKLITVSPDTKVLRAMQLMTGH 160
            ++  +    V  +  +  A+ L   H
Sbjct: 77  KVSLPD--FFVHEEDNITHALLLFLEH 101

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1 Length = 213

 Score = 38.9 bits (91), Expect = 2e-04
 Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 2/44 (4%)

Query: 77  DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII 120
           +D +  A+    +H    L VV   E+  + G ++  D+L  +I
Sbjct: 88  EDNITHALLLFLEHQEPYLPVV--DEEMRLKGAVSLHDFLEALI 129

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls} Length = 128

 Score = 56.3 bits (136), Expect = 5e-11
 Identities = 11/86 (12%), Positives = 28/86 (32%), Gaps = 7/86 (8%)

Query: 75  TTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDI 134
           T   +  DA + +         V+         G++     L     +G  +   K+G+ 
Sbjct: 19  TLGGSTADAARRLAASGCACAPVLDGER---YLGMVHLSRLLEG--RKGWPTVKEKLGEE 73

Query: 135 MTEENKLITVSPDTKVLRAMQLMTGH 160
           + E   + +  P  ++   +  +   
Sbjct: 74  LLET--VRSYRPGEQLFDNLISVAAA 97

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C Length = 323

 Score = 58.0 bits (140), Expect = 7e-11
 Identities = 16/88 (18%), Positives = 34/88 (38%), Gaps = 6/88 (6%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGD 133
           C     V D ++ +TQ  V ++ ++   E   +  +    D L  I     +  S  VG+
Sbjct: 203 CQMTTPVIDVIQMLTQGRVSSVPII--DENGYLINVYEAYDVLGLIKGGIYNDLSLSVGE 260

Query: 134 IMTEENK----LITVSPDTKVLRAMQLM 157
            +   +     + T + + K+   M  +
Sbjct: 261 ALMRRSDDFEGVYTCTKNDKLSTIMDNI 288

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C Length = 323

 Score = 48.0 bits (114), Expect = 2e-07
 Identities = 14/91 (15%), Positives = 36/91 (39%), Gaps = 8/91 (8%)

Query: 77  DDTVYDAVKSMTQHNVGALVVVKPGEQKS---VAGIITERDYLR----KIIVQGRSSKST 129
              +++A   M +   G + ++   E+     V  ++T+   L+                
Sbjct: 130 SRPLFEACLKMLESRSGRIPLIDQDEETHREIVVSVLTQYRILKFVALNCRETHFLKIPI 189

Query: 130 KVGDIMTEENKLITVSPDTKVLRAMQLMTGH 160
              +I+T++N + +    T V+  +Q++T  
Sbjct: 190 GDLNIITQDN-MKSCQMTTPVIDVIQMLTQG 219

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C Length = 323

 Score = 46.9 bits (111), Expect = 7e-07
 Identities = 18/146 (12%), Positives = 43/146 (29%), Gaps = 19/146 (13%)

Query: 28  PMLRPVVSSRFESVSSARMEEHGFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSM 87
           P          E   +         S T  D+L    +      +   T   V  ++  +
Sbjct: 4   PTQDSQEKVSIEQQLAVESIRKFLNSKTSYDVLPVSYR-----LIVLDTSLLVKKSLNVL 58

Query: 88  TQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEEN-------- 139
            Q+++ +  +      +  AG++T  D++  I     +    ++ D +  +         
Sbjct: 59  LQNSIVSAPLWDSKTSR-FAGLLTTTDFINVIQYYFSNPDKFELVDKLQLDGLKDIERAL 117

Query: 140 -----KLITVSPDTKVLRAMQLMTGH 160
                   ++ P   +  A   M   
Sbjct: 118 GVDQLDTASIHPSRPLFEACLKMLES 143

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C Length = 323

 Score = 45.3 bits (107), Expect = 2e-06
 Identities = 14/69 (20%), Positives = 32/69 (46%), Gaps = 3/69 (4%)

Query: 53  STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITE 112
           S ++ + L  +    +G    CT +D +   + ++ +  V    VV   +   + G++T 
Sbjct: 255 SLSVGEALMRRSDDFEGV-YTCTKNDKLSTIMDNIRKARVHRFFVV--DDVGRLVGVLTL 311

Query: 113 RDYLRKIIV 121
            D L+ I++
Sbjct: 312 SDILKYILL 320

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1 Length = 491

 Score = 58.2 bits (142), Expect = 8e-11
 Identities = 22/87 (25%), Positives = 44/87 (50%), Gaps = 7/87 (8%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGD 133
            T +  V +A + M ++ +  + +V+    + + GIIT RD +R I     S  +  + +
Sbjct: 103 LTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRD-MRFI-----SDYNAPISE 156

Query: 134 IMTEENKLITVSPDTKVLRAMQLMTGH 160
            MT E+ L+T +  T +  A +++  H
Sbjct: 157 HMTSEH-LVTAAVGTDLETAERILHEH 182

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A* Length = 149

 Score = 55.6 bits (135), Expect = 1e-10
 Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 5/84 (5%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGD 133
                T+ DA+  +T+ N+G   +    +  ++ GI T+ D LR++   G   +   + D
Sbjct: 43  VGLQATLRDALLEITRKNLGMTAICD--DDMNIIGIFTDGD-LRRVFDTGVDMRDASIAD 99

Query: 134 IMTEENKLITVSPDTKVLRAMQLM 157
           +MT     I + P T  + A+ LM
Sbjct: 100 VMTR--GGIRIRPGTLAVDALNLM 121

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E* Length = 330

 Score = 57.7 bits (139), Expect = 1e-10
 Identities = 18/123 (14%), Positives = 44/123 (35%), Gaps = 20/123 (16%)

Query: 51  FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGII 110
            +S    D++    K      +   T   V  A  ++  + V A  +    +Q    G++
Sbjct: 32  MKSHRCYDLIPTSSK-----LVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQS-FVGML 85

Query: 111 TERDYLRKIIVQGRSSKSTKVGDIMTE-------------ENKLITVSPDTKVLRAMQLM 157
           T  D++  I+ +   S   ++ ++                   L+ +SP+  +  A+  +
Sbjct: 86  TITDFIN-ILHRYYKSALVQIYELEEHKIETWREVYLQDSFKPLVCISPNASLFDAVSSL 144

Query: 158 TGH 160
             +
Sbjct: 145 IRN 147

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E* Length = 330

 Score = 57.3 bits (138), Expect = 2e-10
 Identities = 16/88 (18%), Positives = 31/88 (35%), Gaps = 6/88 (6%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGD 133
             T   VY A+    QH V AL VV   E+  V  I ++ D +     +  ++    V  
Sbjct: 206 VRTTTPVYVALGIFVQHRVSALPVV--DEKGRVVDIYSKFDVINLAAEKTYNNLDVSVTK 263

Query: 134 IMTEEN----KLITVSPDTKVLRAMQLM 157
            +   +     ++       +   +  +
Sbjct: 264 ALQHRSHYFEGVLKCYLHETLEAIINRL 291

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E* Length = 330

 Score = 51.9 bits (124), Expect = 1e-08
 Identities = 19/126 (15%), Positives = 46/126 (36%), Gaps = 11/126 (8%)

Query: 43  SARMEEHGFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGE 102
           SA ++ +  E   I    +   + +    +  + + +++DAV S+ ++ +  L V+ P  
Sbjct: 100 SALVQIYELEEHKIETWREVYLQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPES 159

Query: 103 QKSVAGIITERDYLRKIIVQGRSSKST--------KVGDIMTEENKLITVSPDTKVLRAM 154
                 I+T +  L+ + +                ++         +  V   T V  A+
Sbjct: 160 GN-TLYILTHKRILKFLKLFITEFPKPEFMSKSLEELQIGTYAN--IAMVRTTTPVYVAL 216

Query: 155 QLMTGH 160
            +   H
Sbjct: 217 GIFVQH 222

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E* Length = 330

 Score = 46.5 bits (110), Expect = 7e-07
 Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSK 127
           C   +T+   +  + +  V  LVVV   E   V GI++  D L+ +++ G   K
Sbjct: 278 CYLHETLEAIINRLVEAEVHRLVVV--DEHDVVKGIVSLSDILQALVLTGGEKK 329

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 Length = 282

 Score = 56.7 bits (137), Expect = 2e-10
 Identities = 13/84 (15%), Positives = 33/84 (39%), Gaps = 11/84 (13%)

Query: 77  DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMT 136
             T   A++   ++ V +  VV   ++  + GII+ +  L             ++  ++ 
Sbjct: 17  PATRNYALELFKKYKVRSFPVVN--KEGKLVGIISVKRILVNPD-------EEQLAMLVK 67

Query: 137 EENKLITVSPDTKVLRAMQLMTGH 160
               +  V  +  + +A +LM  +
Sbjct: 68  R--DVPVVKENDTLKKAAKLMLEY 89

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 Length = 282

 Score = 52.9 bits (127), Expect = 4e-09
 Identities = 17/81 (20%), Positives = 35/81 (43%), Gaps = 4/81 (4%)

Query: 77  DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMT 136
           +DT+  A K M +++   +VVV    +    GI+T  D +R+   +    K  ++     
Sbjct: 76  NDTLKKAAKLMLEYDYRRVVVVD--SKGKPVGILTVGDIIRRYFAKSEKYKGVEIEPYYQ 133

Query: 137 EENKLITVSPDTKVLRAMQLM 157
               +  V   T +  A++ +
Sbjct: 134 R--YVSIVWEGTPLKAALKAL 152

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 Length = 282

 Score = 41.7 bits (98), Expect = 3e-05
 Identities = 26/147 (17%), Positives = 42/147 (28%), Gaps = 45/147 (30%)

Query: 55  TISDILKAKGKGADGSWLWC------------TTDDTVYDAVKSMTQHNVGALVVVKPGE 102
           T+ DI++     ++                       +  A+K++   N  AL VV   E
Sbjct: 108 TVGDIIRRYFAKSEKYKGVEIEPYYQRYVSIVWEGTPLKAALKALLLSNSMALPVVD-SE 166

Query: 103 QKSVAGIITERDYLRKII-----------------------------VQGRSSKSTKVGD 133
              V GI+ E D LR                                       +  V +
Sbjct: 167 GNLV-GIVDETDLLRDSEIVRIMKSTELAASSEEEWILESHPTLLFEKFELQLPNKPVAE 225

Query: 134 IMTEENKLITVSPDTKVLRAMQLMTGH 160
           IMT +  +I  +P   V      M  +
Sbjct: 226 IMTRD--VIVATPHMTVHEVALKMAKY 250

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1 Length = 494

 Score = 55.6 bits (135), Expect = 6e-10
 Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 8/87 (9%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGD 133
            T D TV +A+  M ++ +G L VV   E+  + G++T RD +R        + S K+ D
Sbjct: 108 VTPDMTVKEAIDLMAEYKIGGLPVVD--EEGRLVGLLTNRD-VRFE-----KNLSKKIKD 159

Query: 134 IMTEENKLITVSPDTKVLRAMQLMTGH 160
           +MT   KLI   PD  + +A +++  H
Sbjct: 160 LMTPREKLIVAPPDISLEKAKEILHQH 186

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G* Length = 334

 Score = 55.3 bits (133), Expect = 8e-10
 Identities = 13/91 (14%), Positives = 34/91 (37%), Gaps = 6/91 (6%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGD 133
            + +  VYD +K + + N+ A+ +V    + ++  +    D +  I     S+    VG+
Sbjct: 198 ASMETKVYDVIKMLAEKNISAVPIVN--SEGTLLNVYESVDVMHLIQDGDYSNLDLSVGE 255

Query: 134 IMTEENK----LITVSPDTKVLRAMQLMTGH 160
            + +       + T     ++      +   
Sbjct: 256 ALLKRPANFDGVHTCRATDRLDGIFDAIKHS 286

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G* Length = 334

 Score = 39.9 bits (93), Expect = 2e-04
 Identities = 19/128 (14%), Positives = 45/128 (35%), Gaps = 9/128 (7%)

Query: 40  SVSSARMEEHGFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVK 99
           S   A  E   F    + ++ +  G       ++     ++ DA  +M++     + ++ 
Sbjct: 89  SFPEAIAEIDKFRLLGLREVERKIG-AIPPETIYVHPMHSLMDACLAMSKSRARRIPLID 147

Query: 100 PGEQ---KSVAGIITERDYLR----KIIVQGRSSKSTKVGDIMTEENKLITVSPDTKVLR 152
              +   + +  ++T+   L+                    I T  N L T S +TKV  
Sbjct: 148 VDGETGSEMIVSVLTQYRILKFISMNCKETAMLRVPLNQMTIGTWSN-LATASMETKVYD 206

Query: 153 AMQLMTGH 160
            ++++   
Sbjct: 207 VIKMLAEK 214

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G* Length = 334

 Score = 39.5 bits (92), Expect = 2e-04
 Identities = 16/87 (18%), Positives = 32/87 (36%), Gaps = 4/87 (4%)

Query: 55  TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERD 114
           ++ + L  +    DG    C   D +     ++    V  L VV   E   + GI++  D
Sbjct: 252 SVGEALLKRPANFDGVHT-CRATDRLDGIFDAIKHSRVHRLFVV--DENLKLEGILSLAD 308

Query: 115 YLRKIIVQGRSSKSTKVGDIMTEENKL 141
            L   I+  +++           E+ +
Sbjct: 309 IL-NYIIYDKTTTPGVPEQTDNFESAV 334

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A* Length = 503

 Score = 55.3 bits (134), Expect = 8e-10
 Identities = 21/88 (23%), Positives = 36/88 (40%), Gaps = 6/88 (6%)

Query: 74  CTTDDTVYDAVKSMTQHNVGAL-VVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVG 132
              D T  D +    +     + V         + G++T+RD          +   TKV 
Sbjct: 110 VKPDQTFADVLAISQRTTHNTVAVTDDGTPHGVLLGLVTQRD-YPI----DLTQTETKVS 164

Query: 133 DIMTEENKLITVSPDTKVLRAMQLMTGH 160
           D+MT  +KL+T   DTK+  A +++   
Sbjct: 165 DMMTPFSKLVTAHQDTKLSEANKIIWEK 192

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A* Length = 527

 Score = 55.0 bits (133), Expect = 1e-09
 Identities = 21/116 (18%), Positives = 44/116 (37%), Gaps = 9/116 (7%)

Query: 46  MEEHGF-----ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKP 100
           ME   F     E       L           +   +D TV +A+  M +H V  L VV  
Sbjct: 365 MEARNFKEPVNEHGHWWWSLAIAELELPAPPVILKSDATVGEAIALMKKHRVDQLPVVD- 423

Query: 101 GEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQL 156
            +  SV G++ +   + +I+      +S      + +  ++I ++    + +  ++
Sbjct: 424 QDDGSVLGVVGQETLITQIV-SMNRQQSDPAIKALNK--RVIRLNESEILGKLARV 476

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor} Length = 496

 Score = 54.8 bits (133), Expect = 1e-09
 Identities = 20/87 (22%), Positives = 33/87 (37%), Gaps = 8/87 (9%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGD 133
              + T+ D ++    H      VV   E   + GIIT RD +R +     +  +  V  
Sbjct: 102 VRPEQTIADVMELTHYHGFAGFPVVT--ENNELVGIITGRD-VRFV-----TDLTKSVAA 153

Query: 134 IMTEENKLITVSPDTKVLRAMQLMTGH 160
           +MT + +L TV          + M   
Sbjct: 154 VMTPKERLATVKEGATGAEVQEKMHKA 180

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1 Length = 486

 Score = 54.8 bits (133), Expect = 1e-09
 Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 13/87 (14%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGD 133
              D+TV  A+  M +H +  L VV+  +   V GIIT++D          + +   V +
Sbjct: 106 IAPDETVDFALFLMEKHGIDGLPVVEDEK---VVGIITKKDI--------AAREGKLVKE 154

Query: 134 IMTEENKLITVSPDTKVLRAMQLMTGH 160
           +MT+E  +ITV    +V  A+++M  +
Sbjct: 155 LMTKE--VITVPESIEVEEALKIMIEN 179

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A* Length = 514

 Score = 51.8 bits (125), Expect = 1e-08
 Identities = 16/88 (18%), Positives = 37/88 (42%), Gaps = 5/88 (5%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKS-VAGIITERDYLRKIIVQGRSSKSTKVG 132
            +   TV D +++  +H    + + + G   S + GI+T RD +           +T + 
Sbjct: 121 LSPSHTVGDVLEAKMRHGFSGIPITETGTMGSKLVGIVTSRD-ID---FLAEKDHTTLLS 176

Query: 133 DIMTEENKLITVSPDTKVLRAMQLMTGH 160
           ++MT   +L+       +  A +++   
Sbjct: 177 EVMTPRIELVVAPAGVTLKEANEILQRS 204

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens} Length = 164

 Score = 45.4 bits (107), Expect = 1e-06
 Identities = 14/95 (14%), Positives = 34/95 (35%), Gaps = 7/95 (7%)

Query: 73  WCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQG-------RS 125
               D  + + VK +T  +V    +V+  E + + GI+     ++ +  +        + 
Sbjct: 25  TLAKDTPLEEVVKVVTSTDVTEYPLVESTESQILVGIVQRAQLVQALQAEPPSRAPGHQQ 84

Query: 126 SKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTGH 160
                +      E   +T+  +T + +A  L    
Sbjct: 85  CLQDILARGCPTEPVTLTLFSETTLHQAQNLFKLL 119

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A* Length = 185

 Score = 41.0 bits (96), Expect = 3e-05
 Identities = 15/105 (14%), Positives = 32/105 (30%), Gaps = 25/105 (23%)

Query: 76  TDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI---------------- 119
              TV D    +++       VV   E + + G +  RD +  I                
Sbjct: 32  DSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIENARKKQDGVVSTSII 91

Query: 120 -------IVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLM 157
                   +   +  + K+ +I+       TV+  T +   + + 
Sbjct: 92  YFTEHSPPLPPYTPPTLKLRNILDLS--PFTVTDLTPMEIVVDIF 134

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	164
3k6e_A	156	CBS domain protein; streptococcus pneumoniae TIGR4	99.65
4esy_A	170	CBS domain containing membrane protein; structural	99.65
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	99.63
3lv9_A	148	Putative transporter; CBS domain, PSI, MCSG, struc	99.63
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	99.62
3hf7_A	130	Uncharacterized CBS-domain protein; CSB-domain PAI	99.62
3kxr_A	205	Magnesium transporter, putative; cystathionine bet	99.61
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	99.61
3jtf_A	129	Magnesium and cobalt efflux protein; CBS domain, C	99.6
3i8n_A	130	Uncharacterized protein VP2912; APC64273.1, vibrio	99.59
3lhh_A	172	CBS domain protein; structural genomics, PSI-2, pr	99.59
3lfr_A	136	Putative metal ION transporter; CBS, AMP, PSI, MCS	99.59
3nqr_A	127	Magnesium and cobalt efflux protein CORC; structur	99.59
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	99.59
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	99.58
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	99.58
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	99.58
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	99.58
1pbj_A	125	Hypothetical protein; structural genomics, domain,	99.58
3oco_A	153	Hemolysin-like protein containing CBS domains; str	99.58
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	99.57
3oi8_A	156	Uncharacterized protein; structural genomics, PSI-	99.56
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	99.56
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	99.55
1pvm_A	184	Conserved hypothetical protein TA0289; structural	99.55
4fry_A	157	Putative signal-transduction protein with CBS DOM;	99.54
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	99.53
3ocm_A	173	Putative membrane protein; structural genomics, PS	99.53
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	99.52
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	99.52
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	99.51
3ghd_A	70	A cystathionine beta-synthase domain protein FUSE	99.51
2oux_A	286	Magnesium transporter; 10001B, structural genomics	99.5
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	99.49
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	99.49
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	99.49
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	99.48
4gqw_A	152	CBS domain-containing protein CBSX1, chloroplasti;	99.48
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	99.47
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	99.47
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	99.46
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	99.46
2yvy_A	278	MGTE, Mg2+ transporter MGTE; membrane protein, tra	99.42
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	99.41
1vr9_A	213	CBS domain protein/ACT domain protein; structural	99.39
4af0_A	556	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	99.38
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	99.38
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	99.36
2zy9_A	473	Mg2+ transporter MGTE; membrane protien, metal tra	99.35
3fio_A	70	A cystathionine beta-synthase domain protein fused	99.32
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	99.31
3org_A	632	CMCLC; transporter, transport protein; 3.50A {Cyan	99.31
3ddj_A	296	CBS domain-containing protein; structural genomics	99.3
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	99.3
3ddj_A	296	CBS domain-containing protein; structural genomics	99.29
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	99.28
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	99.28
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	99.26
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	99.25
2d4z_A	250	Chloride channel protein; CLC chloride channel cyt	99.2
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	99.13
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	99.12
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	99.11
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	99.08
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	99.07
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	99.06
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	99.04
1vr9_A	213	CBS domain protein/ACT domain protein; structural	99.02
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	98.95
3nqr_A	127	Magnesium and cobalt efflux protein CORC; structur	98.94
3i8n_A	130	Uncharacterized protein VP2912; APC64273.1, vibrio	98.93
3jtf_A	129	Magnesium and cobalt efflux protein; CBS domain, C	98.9
4esy_A	170	CBS domain containing membrane protein; structural	98.9
4fry_A	157	Putative signal-transduction protein with CBS DOM;	98.9
3hf7_A	130	Uncharacterized CBS-domain protein; CSB-domain PAI	98.89
4gqw_A	152	CBS domain-containing protein CBSX1, chloroplasti;	98.89
3lv9_A	148	Putative transporter; CBS domain, PSI, MCSG, struc	98.88
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	98.85
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	98.85
3oco_A	153	Hemolysin-like protein containing CBS domains; str	98.84
3lhh_A	172	CBS domain protein; structural genomics, PSI-2, pr	98.84
3lfr_A	136	Putative metal ION transporter; CBS, AMP, PSI, MCS	98.83
1pbj_A	125	Hypothetical protein; structural genomics, domain,	98.81
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	98.8
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	98.8
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	98.8
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	98.79
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	98.78
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	98.78
3kxr_A	205	Magnesium transporter, putative; cystathionine bet	98.78
3k6e_A	156	CBS domain protein; streptococcus pneumoniae TIGR4	98.77
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	98.77
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	98.77
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	98.75
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	98.74
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	98.74
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	98.73
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	98.73
3oi8_A	156	Uncharacterized protein; structural genomics, PSI-	98.73
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	98.72
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	98.71
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	98.68
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	98.67
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	98.65
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	98.65
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	98.65
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	98.63
1pvm_A	184	Conserved hypothetical protein TA0289; structural	98.63
2oux_A	286	Magnesium transporter; 10001B, structural genomics	98.62
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	98.61
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	98.61
3ocm_A	173	Putative membrane protein; structural genomics, PS	98.58
2yvy_A	278	MGTE, Mg2+ transporter MGTE; membrane protein, tra	98.55
2zy9_A	473	Mg2+ transporter MGTE; membrane protien, metal tra	98.4
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	98.33
2d4z_A	250	Chloride channel protein; CLC chloride channel cyt	98.31
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	98.23
3org_A	632	CMCLC; transporter, transport protein; 3.50A {Cyan	98.05
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	97.94
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	97.91
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	97.83
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	97.81
4af0_A	556	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	97.76
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	97.76
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	97.69
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	97.3
3ghd_A	70	A cystathionine beta-synthase domain protein FUSE	91.4
3fio_A	70	A cystathionine beta-synthase domain protein fused	84.59
1xn7_A	78	Hypothetical protein YHGG; alpha+beta, GFT structu	82.45
2k02_A	87	Ferrous iron transport protein C; FEOC, iron-sulfu	82.02

>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}

Probab=99.65  E-value=2.5e-16  Score=110.83  Aligned_cols=100  Identities=16%  Similarity=0.177  Sum_probs=86.0

Q ss_pred             ccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCC---Ccccc
Q 031190           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRS---SKSTK  130 (164)
Q Consensus        54 ~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~---~~~~~  130 (164)
                      .+++++|++++     ++.++.+++|+.+|+++|.+++++++||+  |++|+++|+||.+|+++.+......   ....+
T Consensus        15 ~~~~~iM~P~~-----~v~~v~~~~t~~~a~~~m~~~~~s~~pVv--d~~~~lvGiit~~Di~~~~~~~~~~~~~~~~~~   87 (156)
T 3k6e_A           15 GQEETFLTPAK-----NLAVLIDTHNADHATLLLSQMTYTRVPVV--TDEKQFVGTIGLRDIMAYQMEHDLSQEIMADTD   87 (156)
T ss_dssp             TTGGGGEEETT-----SSCCEETTSBHHHHHHHHTTSSSSEEEEE--CC-CBEEEEEEHHHHHHHHHHHTCCHHHHTTSB
T ss_pred             ccHHHhCcchh-----HeEEECCcCCHHHHHHHHHHcCCcEEEEE--cCCCcEEEEEEecchhhhhhhcccccccccccC
Confidence            47889999865     49999999999999999999999999999  7889999999999998776644321   13568


Q ss_pred             cccccccCCCeEEEcCCCCHHHHHHHHHhCCC
Q 031190          131 VGDIMTEENKLITVSPDTKVLRAMQLMTGHML  162 (164)
Q Consensus       131 v~~vm~~~~~~~~v~~~~~l~e~~~~m~~~~~  162 (164)
                      +.++|.+  ++.++++++++.+|+++|.++++
T Consensus        88 v~~im~~--~~~~v~~~~~l~~~~~~m~~~~~  117 (156)
T 3k6e_A           88 IVHMTKT--DVAVVSPDFTITEVLHKLVDESF  117 (156)
T ss_dssp             GGGTCBC--SCCCBCTTCCHHHHHHHTTTSSE
T ss_pred             HHHhhcC--CceecccccHHHHHHHHHHHcCC
Confidence            9999999  59999999999999999988765

>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}

Probab=99.65  E-value=6e-17  Score=115.08  Aligned_cols=103  Identities=28%  Similarity=0.417  Sum_probs=87.1

Q ss_pred             CcccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcC------
Q 031190           50 GFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQG------  123 (164)
Q Consensus        50 ~~~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~------  123 (164)
                      .+.+++|+|+|++       +++++.+++|+.+|++.|.+++++++||+  |++|+++|+||.+|+++......      
T Consensus        14 ~l~~~~V~diM~~-------~v~~v~~~~tl~~a~~~m~~~~~~~~pVv--d~~g~lvGiit~~Dll~~~~~~~~~~~~~   84 (170)
T 4esy_A           14 AIRQVPIRDILTS-------PVVTVREDDTLDAVAKTMLEHQIGCAPVV--DQNGHLVGIITESDFLRGSIPFWIYEASE   84 (170)
T ss_dssp             HHHTSBGGGGCCS-------CCCCEETTSBHHHHHHHHHHTTCSEEEEE--CTTSCEEEEEEGGGGGGGTCCTTHHHHHH
T ss_pred             HHcCCCHHHhcCC-------CCcEECCcCcHHHHHHHHHHcCCeEEEEE--cCCccEEEEEEHHHHHHHHhhccccchhh
Confidence            3567899999988       69999999999999999999999999999  88999999999999965321100      


Q ss_pred             ---------------CCCcccccccccccCCCeEEEcCCCCHHHHHHHHHhCCCC
Q 031190          124 ---------------RSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTGHMLL  163 (164)
Q Consensus       124 ---------------~~~~~~~v~~vm~~~~~~~~v~~~~~l~e~~~~m~~~~~~  163 (164)
                                     ......+++++|++  ++++|++++++.+|+++|.+++++
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~v~~im~~--~~~tv~~~~~l~~a~~~m~~~~~~  137 (170)
T 4esy_A           85 ILSRAIPAPEVEHLFETGRKLTASAVMTQ--PVVTAAPEDSVGSIADQMRRHGIH  137 (170)
T ss_dssp             HHTTTSCHHHHHHHHHHHTTCBHHHHCBC--CSCCBCTTSBHHHHHHHHHHTTCS
T ss_pred             hhhhccchhhHHhhhccccccchhhhccc--CcccCCcchhHHHHHHHHHHcCCc
Confidence                           01124579999999  599999999999999999999874

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1

Probab=99.63  E-value=1.9e-15  Score=103.30  Aligned_cols=102  Identities=27%  Similarity=0.385  Sum_probs=88.0

Q ss_pred             CcccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCccc
Q 031190           50 GFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKST  129 (164)
Q Consensus        50 ~~~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~  129 (164)
                      .+...+++++|.+       ++.++.+++++.+|++.|.+++++++||+  |++|+++|+|+.+|+++.+...+. ....
T Consensus         3 ~l~~~~v~~im~~-------~~~~v~~~~~~~~a~~~~~~~~~~~~~Vv--d~~~~~~Givt~~dl~~~~~~~~~-~~~~   72 (138)
T 2yzi_A            3 MDMKAPIKVYMTK-------KLLGVKPSTSVQEASRLMMEFDVGSLVVI--NDDGNVVGFFTKSDIIRRVIVPGL-PYDI   72 (138)
T ss_dssp             CCTTSBGGGTCBC-------CCCEECTTSBHHHHHHHHHHHTCSEEEEE--CTTSCEEEEEEHHHHHHHTTTTCC-CTTS
T ss_pred             chhhhhHHHHhcC-------CCeEECCCCcHHHHHHHHHHcCCCEEEEE--cCCCcEEEEEeHHHHHHHHHhcCC-cccC
Confidence            4567899999987       59999999999999999999999999999  778999999999999755443332 3467


Q ss_pred             ccccccccCCCeEEEcCCCCHHHHHHHHHhCCCC
Q 031190          130 KVGDIMTEENKLITVSPDTKVLRAMQLMTGHMLL  163 (164)
Q Consensus       130 ~v~~vm~~~~~~~~v~~~~~l~e~~~~m~~~~~~  163 (164)
                      ++.++|.+  +++++++++++.++++.|.+++++
T Consensus        73 ~v~~~m~~--~~~~v~~~~~l~~~~~~m~~~~~~  104 (138)
T 2yzi_A           73 PVERIMTR--NLITANVNTPLGEVLRKMAEHRIK  104 (138)
T ss_dssp             BGGGTCBC--SCCEEETTSBHHHHHHHHHHHTCS
T ss_pred             CHHHHhhC--CCeEECCCCcHHHHHHHHHhcCCC
Confidence            89999988  589999999999999999887753

>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}

Probab=99.63  E-value=2.4e-15  Score=104.17  Aligned_cols=99  Identities=16%  Similarity=0.301  Sum_probs=86.2

Q ss_pred             CcccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCC-CcEEEEEehHHHHHHHHHcCCCCcc
Q 031190           50 GFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ-KSVAGIITERDYLRKIIVQGRSSKS  128 (164)
Q Consensus        50 ~~~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~-~~~vGivt~~dil~~~~~~~~~~~~  128 (164)
                      .+...+|+++|++++     ++.++++++++.+|++.|.+++++++||+  |++ |+++|+||.+|+++.+....    .
T Consensus        19 ~l~~~~v~diM~~~~-----~~~~v~~~~~~~~a~~~m~~~~~~~~pVv--d~~~~~lvGivt~~dl~~~~~~~~----~   87 (148)
T 3lv9_A           19 EFEEKKIREIMVPRT-----DMVCIYESDSEEKILAILKEEGVTRYPVC--RKNKDDILGFVHIRDLYNQKINEN----K   87 (148)
T ss_dssp             GGGTCBGGGTSEETT-----TCCCEETTCCHHHHHHHHHHSCCSEEEEE--SSSTTSEEEEEEHHHHHHHHHHHS----C
T ss_pred             ccCCCCHHHccccHH-----HeEEECCCCCHHHHHHHHHHCCCCEEEEE--cCCCCcEEEEEEHHHHHHHHhcCC----C
Confidence            357889999999743     38999999999999999999999999999  666 89999999999987655332    6


Q ss_pred             cccccccccCCCeEEEcCCCCHHHHHHHHHhCCC
Q 031190          129 TKVGDIMTEENKLITVSPDTKVLRAMQLMTGHML  162 (164)
Q Consensus       129 ~~v~~vm~~~~~~~~v~~~~~l~e~~~~m~~~~~  162 (164)
                      .++.++| +  +++++++++++.++++.|.++++
T Consensus        88 ~~v~~~m-~--~~~~v~~~~~l~~~~~~m~~~~~  118 (148)
T 3lv9_A           88 IELEEIL-R--DIIYISENLTIDKALERIRKEKL  118 (148)
T ss_dssp             CCGGGTC-B--CCEEEETTSBHHHHHHHHHHHTC
T ss_pred             ccHHHhc-C--CCeEECCCCCHHHHHHHHHhcCC
Confidence            7899999 5  48999999999999999988765

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}

Probab=99.62  E-value=3.7e-15  Score=105.21  Aligned_cols=104  Identities=28%  Similarity=0.417  Sum_probs=89.5

Q ss_pred             cccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCcccc
Q 031190           51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTK  130 (164)
Q Consensus        51 ~~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~  130 (164)
                      +..++|+++|.++.+    ++.++.+++++.+|++.|.+++++++||+  |++|+++|+||.+|+++.+..........+
T Consensus        21 l~~~~v~dim~~~~~----~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv--d~~~~~~Givt~~dl~~~~~~~~~~~~~~~   94 (165)
T 3fhm_A           21 GMATFVKDLLDRKGR----DVVTVGPDVSIGEAAGTLHAHKIGAVVVT--DADGVVLGIFTERDLVKAVAGQGAASLQQS   94 (165)
T ss_dssp             SSSCBHHHHHHHHCS----CCCEECTTSBHHHHHHHHHHHTCSEEEEE--CTTSCEEEEEEHHHHHHHHHHHGGGGGTSB
T ss_pred             hhhcCHHHHhccCCC----CCeEECCCCCHHHHHHHHHHcCCCEEEEE--cCCCeEEEEEEHHHHHHHHHhcCCccccCC
Confidence            567899999997311    49999999999999999999999999999  788999999999999887664432235678


Q ss_pred             cccccccCCCeEEEcCCCCHHHHHHHHHhCCC
Q 031190          131 VGDIMTEENKLITVSPDTKVLRAMQLMTGHML  162 (164)
Q Consensus       131 v~~vm~~~~~~~~v~~~~~l~e~~~~m~~~~~  162 (164)
                      +.++|.+  +++++++++++.+++++|.++++
T Consensus        95 v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~  124 (165)
T 3fhm_A           95 VSVAMTK--NVVRCQHNSTTDQLMEIMTGGRF  124 (165)
T ss_dssp             GGGTSBS--SCCCBCTTCBHHHHHHHHHHHTC
T ss_pred             HHHHhcC--CCeEECCCCcHHHHHHHHHHcCC
Confidence            9999998  58999999999999999988775

>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}

Probab=99.62  E-value=1.8e-15  Score=102.91  Aligned_cols=99  Identities=12%  Similarity=0.174  Sum_probs=82.4

Q ss_pred             cccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCC-CCcEEEEEehHHHHHHHHHcCCCCccccc
Q 031190           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGE-QKSVAGIITERDYLRKIIVQGRSSKSTKV  131 (164)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~-~~~~vGivt~~dil~~~~~~~~~~~~~~v  131 (164)
                      +++|+++|++..     ++.++++++++.+|++.|.+++++++||+  ++ +|+++|+||.+|+++.+. .+......++
T Consensus         1 ~~~v~~iM~~~~-----~~~~v~~~~~v~~a~~~m~~~~~~~~pVv--~~~~~~lvGivt~~dl~~~~~-~~~~~~~~~v   72 (130)
T 3hf7_A            1 KVSVNDIMVPRN-----EIVGIDINDDWKSIVRQLTHSPHGRIVLY--RDSLDDAISMLRVREAYRLMT-EKKEFTKEIM   72 (130)
T ss_dssp             CCBHHHHSEEGG-----GCCEEETTSCHHHHHHHHHTCSSSEEEEE--SSSGGGEEEEEEHHHHHHHHT-SSSCCCHHHH
T ss_pred             CcCHHHhCccHH-----HEEEEcCCCCHHHHHHHHHHCCCCeEEEE--cCCCCcEEEEEEHHHHHHHHh-ccCccchhhH
Confidence            368999997532     48999999999999999999999999999  54 589999999999977553 2222234678


Q ss_pred             ccccccCCCeEEEcCCCCHHHHHHHHHhCCC
Q 031190          132 GDIMTEENKLITVSPDTKVLRAMQLMTGHML  162 (164)
Q Consensus       132 ~~vm~~~~~~~~v~~~~~l~e~~~~m~~~~~  162 (164)
                      .++|++   ++++++++++.++++.|.++++
T Consensus        73 ~~~m~~---~~~v~~~~~l~~~~~~m~~~~~  100 (130)
T 3hf7_A           73 LRAADE---IYFVPEGTPLSTQLVKFQRNKK  100 (130)
T ss_dssp             HHHSBC---CCEEETTCBHHHHHHHHHHHCC
T ss_pred             HHhccC---CeEeCCCCcHHHHHHHHHhcCC
Confidence            999954   8899999999999999988775

>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}

Probab=99.61  E-value=1.2e-15  Score=112.00  Aligned_cols=134  Identities=12%  Similarity=0.168  Sum_probs=106.2

Q ss_pred             CCCChHHHHHHhCccccccccccccccccccchhhh-hcCcccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHc
Q 031190           12 GNIVKSAVLQRIRLVNPMLRPVVSSRFESVSSARME-EHGFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQH   90 (164)
Q Consensus        12 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~   90 (164)
                      ..+..++.++.++..+......+...++......+. ...|.+.+|+++|++       +++++.+++|+.+|++.|.++
T Consensus        11 ~~m~~dd~~dll~~l~~~~~~~~l~~l~~~e~~~i~~~l~~~~~~v~~iM~~-------~~~~v~~~~tv~eal~~~~~~   83 (205)
T 3kxr_A           11 AQLSPEDLIEWSDYLPESFTDRALAQMGERQRQRFELYDQYSENEIGRYTDH-------QMLVLSDKATVAQAQRFFRRI   83 (205)
T ss_dssp             GGSCHHHHHHTTTTSCHHHHHHHHHHSCHHHHHHHHHHHHSCTTCGGGGCBC-------CCCEEETTCBHHHHHHHHHHC
T ss_pred             HcCCHHHHHHHHHhCCHHHHHHHHHcCCHHHHHHHHHHhCCCcchHHhhccC-------ceEEECCCCcHHHHHHHHHhh
Confidence            456677888877765555444444444433333333 235788999999998       699999999999999999987


Q ss_pred             ---CCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCcccccccccccCCCeEEEcCCCCHHHHHHHHHhCCCC
Q 031190           91 ---NVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTGHMLL  163 (164)
Q Consensus        91 ---~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~v~~vm~~~~~~~~v~~~~~l~e~~~~m~~~~~~  163 (164)
                         +++++||+  |++|+++|+||.+|++.       .....+++++|++  ++++|++++++.++++.|.+++++
T Consensus        84 ~~~~~~~~~Vv--d~~~~lvGivt~~dll~-------~~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~  148 (205)
T 3kxr_A           84 ELDCNDNLFIV--DEADKYLGTVRRYDIFK-------HEPHEPLISLLSE--DSRALTANTTLLDAAEAIEHSREI  148 (205)
T ss_dssp             CCTTCCEEEEE--CTTCBEEEEEEHHHHTT-------SCTTSBGGGGCCS--SCCCEETTSCHHHHHHHHHTSSCS
T ss_pred             CccCeeEEEEE--cCCCeEEEEEEHHHHHh-------CCCcchHHHHhcC--CCeEECCCCCHHHHHHHHHhcCCC
Confidence               78999999  78899999999999964       1346789999988  589999999999999999998874

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1

Probab=99.61  E-value=4e-15  Score=101.38  Aligned_cols=99  Identities=32%  Similarity=0.528  Sum_probs=84.5

Q ss_pred             cHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCcccccccc
Q 031190           55 TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDI  134 (164)
Q Consensus        55 ~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~v~~v  134 (164)
                      +++++|.++..    ++.++++++++.+|++.|.+++++++||+  | +|+++|+|+.+|+++.+...+......++.++
T Consensus         7 ~v~~im~~~~~----~~~~v~~~~~~~~a~~~~~~~~~~~~~Vv--d-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~   79 (135)
T 2rc3_A            7 TVKHLLQEKGH----TVVAIGPDDSVFNAMQKMAADNIGALLVM--K-DEKLVGILTERDFSRKSYLLDKPVKDTQVKEI   79 (135)
T ss_dssp             BHHHHHHHHCC----CCCEECTTSBHHHHHHHHHHHTCSEEEEE--E-TTEEEEEEEHHHHHHHGGGSSSCGGGSBGGGT
T ss_pred             eHHHHHhcCCC----CcEEECCCCcHHHHHHHHHhcCCCEEEEE--E-CCEEEEEEehHHHHHHHHHcCCCcccCCHHHh
Confidence            89999983211    59999999999999999999999999999  6 78999999999997655444333457789999


Q ss_pred             cccCCCeEEEcCCCCHHHHHHHHHhCCC
Q 031190          135 MTEENKLITVSPDTKVLRAMQLMTGHML  162 (164)
Q Consensus       135 m~~~~~~~~v~~~~~l~e~~~~m~~~~~  162 (164)
                      |.+  ++.++++++++.++++.|.++++
T Consensus        80 m~~--~~~~v~~~~~l~~~~~~m~~~~~  105 (135)
T 2rc3_A           80 MTR--QVAYVDLNNTNEDCMALITEMRV  105 (135)
T ss_dssp             SBC--SCCCBCTTCBHHHHHHHHHHHTC
T ss_pred             ccC--CCeEECCCCcHHHHHHHHHHhCC
Confidence            998  58999999999999999988765

>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}

Probab=99.60  E-value=3.5e-15  Score=101.25  Aligned_cols=97  Identities=9%  Similarity=0.197  Sum_probs=82.8

Q ss_pred             ccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCC-CcEEEEEehHHHHHHHHHcCCCCcccc
Q 031190           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ-KSVAGIITERDYLRKIIVQGRSSKSTK  130 (164)
Q Consensus        52 ~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~-~~~vGivt~~dil~~~~~~~~~~~~~~  130 (164)
                      .+.+|+++|++..     ++.++++++++.+|++.|.+++++++||+  |++ |+++|+||.+|+++.+.     ....+
T Consensus         3 ~~~~v~diM~~~~-----~~~~v~~~~~~~~a~~~m~~~~~~~~pVv--d~~~~~~~Givt~~dl~~~~~-----~~~~~   70 (129)
T 3jtf_A            3 AERTVADIMVPRS-----RMDLLDISQPLPQLLATIIETAHSRFPVY--EDDRDNIIGILLAKDLLRYML-----EPALD   70 (129)
T ss_dssp             -CCBHHHHCEEGG-----GCCCEETTSCHHHHHHHHHHSCCSEEEEE--SSSTTCEEEEEEGGGGGGGGT-----CTTSC
T ss_pred             CCCCHHHhCccHH-----HeEEECCCCCHHHHHHHHHHcCCCEEEEE--cCCCCcEEEEEEHHHHHhHhc-----cCCcC
Confidence            4679999999532     48999999999999999999999999999  664 89999999999976432     23568


Q ss_pred             cccccccCCCeEEEcCCCCHHHHHHHHHhCCCC
Q 031190          131 VGDIMTEENKLITVSPDTKVLRAMQLMTGHMLL  163 (164)
Q Consensus       131 v~~vm~~~~~~~~v~~~~~l~e~~~~m~~~~~~  163 (164)
                      ++++|++   ++++++++++.+++++|.+++++
T Consensus        71 v~~~m~~---~~~v~~~~~l~~~~~~m~~~~~~  100 (129)
T 3jtf_A           71 IRSLVRP---AVFIPEVKRLNVLLREFRASRNH  100 (129)
T ss_dssp             GGGGCBC---CCEEETTCBHHHHHHHHHTSSCC
T ss_pred             HHHHhCC---CeEeCCCCcHHHHHHHHHhcCCe
Confidence            9999976   88999999999999999988763

>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}

Probab=99.59  E-value=1.5e-15  Score=103.10  Aligned_cols=99  Identities=14%  Similarity=0.267  Sum_probs=82.0

Q ss_pred             cccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCC-CcEEEEEehHHHHHHHHHcCCCCccc
Q 031190           51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ-KSVAGIITERDYLRKIIVQGRSSKST  129 (164)
Q Consensus        51 ~~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~-~~~vGivt~~dil~~~~~~~~~~~~~  129 (164)
                      |.+.+|+++|.+..     .+.++++++++.+|++.|.+++++++||+  |++ |+++|+||.+|+++.... +  ....
T Consensus         3 l~~~~v~~iM~~~~-----~v~~v~~~~~~~~a~~~m~~~~~~~~pVv--d~~~~~~~Givt~~dl~~~~~~-~--~~~~   72 (130)
T 3i8n_A            3 AQDVPVTQVMTPRP-----VVFRVDATMTINEFLDKHKDTPFSRPLVY--SEQKDNIIGFVHRLELFKMQQS-G--SGQK   72 (130)
T ss_dssp             ----CCTTTSCCBC-----CCCEEETTSBHHHHHHHTTTCSCSCCEEE--SSSTTCEEEECCHHHHHHHHHT-T--TTTS
T ss_pred             cCcCCHhhCCCcHH-----HEEEEcCCCCHHHHHHHHHhCCCCEEEEE--eCCCCcEEEEEEHHHHHHHHhc-C--CCcC
Confidence            56789999998643     37799999999999999999999999999  666 899999999999776542 2  2367


Q ss_pred             ccccccccCCCeEEEcCCCCHHHHHHHHHhCCC
Q 031190          130 KVGDIMTEENKLITVSPDTKVLRAMQLMTGHML  162 (164)
Q Consensus       130 ~v~~vm~~~~~~~~v~~~~~l~e~~~~m~~~~~  162 (164)
                      ++.++|++   +.++++++++.++++.|.++++
T Consensus        73 ~v~~~m~~---~~~v~~~~~l~~~~~~m~~~~~  102 (130)
T 3i8n_A           73 QLGAVMRP---IQVVLNNTALPKVFDQMMTHRL  102 (130)
T ss_dssp             BHHHHSEE---CCEEETTSCHHHHHHHHHHHTC
T ss_pred             CHHHHhcC---CcCcCCCCcHHHHHHHHHHcCC
Confidence            89999965   8899999999999999988765

>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}

Probab=99.59  E-value=6.5e-15  Score=104.79  Aligned_cols=99  Identities=13%  Similarity=0.227  Sum_probs=82.2

Q ss_pred             CcccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCC-CcEEEEEehHHHHHHHHHcCCCCcc
Q 031190           50 GFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ-KSVAGIITERDYLRKIIVQGRSSKS  128 (164)
Q Consensus        50 ~~~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~-~~~vGivt~~dil~~~~~~~~~~~~  128 (164)
                      .+...+|+++|+++.     +++++++++++.+|++.|.+++++++||+  |++ ++++|+||.+|+++.... +   ..
T Consensus        38 ~l~~~~v~diM~~~~-----~~~~v~~~~~v~~a~~~m~~~~~~~~pVv--d~~~~~lvGivt~~dl~~~~~~-~---~~  106 (172)
T 3lhh_A           38 RLDERTISSLMVPRS-----DIVFLDLNLPLDANLRTVMQSPHSRFPVC--RNNVDDMVGIISAKQLLSESIA-G---ER  106 (172)
T ss_dssp             -----CTTTTSEEGG-----GCCCEETTSCHHHHHHHHHTCCCSEEEEE--SSSTTSEEEEEEHHHHHHHHHT-T---CC
T ss_pred             ccCCCCHHHhCccHH-----HeEEEcCCCCHHHHHHHHHhCCCCEEEEE--eCCCCeEEEEEEHHHHHHHHhh-c---Cc
Confidence            367899999999432     48999999999999999999999999999  666 899999999999876542 2   26


Q ss_pred             cccccccccCCCeEEEcCCCCHHHHHHHHHhCCC
Q 031190          129 TKVGDIMTEENKLITVSPDTKVLRAMQLMTGHML  162 (164)
Q Consensus       129 ~~v~~vm~~~~~~~~v~~~~~l~e~~~~m~~~~~  162 (164)
                      .++.++| +  +++++++++++.++++.|.++++
T Consensus       107 ~~v~~im-~--~~~~v~~~~~l~~a~~~m~~~~~  137 (172)
T 3lhh_A          107 LELVDLV-K--NCNFVPNSLSGMELLEHFRTTGS  137 (172)
T ss_dssp             CCGGGGC-B--CCEEEETTCCHHHHHHHHHHHTC
T ss_pred             ccHHHHh-c--CCeEeCCCCCHHHHHHHHHHcCC
Confidence            7899999 5  49999999999999999988775

>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}

Probab=99.59  E-value=3.1e-15  Score=102.47  Aligned_cols=98  Identities=14%  Similarity=0.246  Sum_probs=83.0

Q ss_pred             cccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCC-CcEEEEEehHHHHHHHHHcCCCCccccc
Q 031190           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ-KSVAGIITERDYLRKIIVQGRSSKSTKV  131 (164)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~-~~~vGivt~~dil~~~~~~~~~~~~~~v  131 (164)
                      +.+|+++|+++.     ++.++.+++++.+|++.|.+++++++||+  +++ |+++|+||.+|+++.+. .. .....++
T Consensus         2 ~~~v~~iM~~~~-----~~~~v~~~~~v~~a~~~m~~~~~~~~pVv--d~~~~~~vGivt~~dl~~~~~-~~-~~~~~~v   72 (136)
T 3lfr_A            2 DLQVRDIMVPRS-----QMISIKATQTPREFLPAVIDAAHSRYPVI--GESHDDVLGVLLAKDLLPLIL-KA-DGDSDDV   72 (136)
T ss_dssp             -CBHHHHSEEGG-----GCCCEETTCCHHHHHHHHHHHCCSEEEEE--SSSTTCEEEEEEGGGGGGGGG-SS-SGGGCCG
T ss_pred             CCChHhccccHH-----HEEEEcCCCCHHHHHHHHHhCCCCEEEEE--cCCCCcEEEEEEHHHHHHHHH-hc-cCCCcCH
Confidence            568999998532     48999999999999999999999999999  666 79999999999976542 11 2346789


Q ss_pred             ccccccCCCeEEEcCCCCHHHHHHHHHhCCC
Q 031190          132 GDIMTEENKLITVSPDTKVLRAMQLMTGHML  162 (164)
Q Consensus       132 ~~vm~~~~~~~~v~~~~~l~e~~~~m~~~~~  162 (164)
                      +++|++   ++++++++++.+++++|.++++
T Consensus        73 ~~~m~~---~~~v~~~~~l~~~~~~m~~~~~  100 (136)
T 3lfr_A           73 KKLLRP---ATFVPESKRLNVLLREFRANHN  100 (136)
T ss_dssp             GGTCBC---CCEEETTCBHHHHHHHHHHHTC
T ss_pred             HHHcCC---CeEECCCCcHHHHHHHHHhcCC
Confidence            999976   8899999999999999998776

>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}

Probab=99.59  E-value=2.1e-15  Score=102.02  Aligned_cols=98  Identities=12%  Similarity=0.272  Sum_probs=83.0

Q ss_pred             cccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCC-CcEEEEEehHHHHHHHHHcCCCCccccc
Q 031190           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ-KSVAGIITERDYLRKIIVQGRSSKSTKV  131 (164)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~-~~~vGivt~~dil~~~~~~~~~~~~~~v  131 (164)
                      +.+|+++|.+..     ++.++.+++++.+|++.|.+++++++||+  |++ |+++|+||.+|+++.+..   .....++
T Consensus         2 ~~~v~diM~~~~-----~~~~v~~~~~~~~a~~~m~~~~~~~~pVv--d~~~~~~vGivt~~dl~~~~~~---~~~~~~v   71 (127)
T 3nqr_A            2 DQRVRDIMIPRS-----QMITLKRNQTLDECLDVIIESAHSRFPVI--SEDKDHIEGILMAKDLLPFMRS---DAEAFSM   71 (127)
T ss_dssp             -CBHHHHSEEGG-----GCCCEETTCCHHHHHHHHHHHCCSEEEEE--SSSTTCEEEEEEGGGGGGGGST---TCCCCCH
T ss_pred             CcCHHHhcccHH-----HeEEEcCCCCHHHHHHHHHhCCCCEEEEE--cCCCCcEEEEEEHHHHHHHHhc---cCCCCCH
Confidence            568999999622     38999999999999999999999999999  666 899999999999764321   1246789


Q ss_pred             ccccccCCCeEEEcCCCCHHHHHHHHHhCCCC
Q 031190          132 GDIMTEENKLITVSPDTKVLRAMQLMTGHMLL  163 (164)
Q Consensus       132 ~~vm~~~~~~~~v~~~~~l~e~~~~m~~~~~~  163 (164)
                      +++|++   +.++++++++.++++.|.+++++
T Consensus        72 ~~~m~~---~~~v~~~~~l~~a~~~m~~~~~~  100 (127)
T 3nqr_A           72 DKVLRT---AVVVPESKRVDRMLKEFRSQRYH  100 (127)
T ss_dssp             HHHCBC---CCEEETTCBHHHHHHHHHHTTCC
T ss_pred             HHHcCC---CeEECCCCcHHHHHHHHHhcCCe
Confidence            999966   78999999999999999988763

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*

Probab=99.59  E-value=4.4e-15  Score=104.18  Aligned_cols=103  Identities=21%  Similarity=0.306  Sum_probs=87.6

Q ss_pred             cCcccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCcc
Q 031190           49 HGFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKS  128 (164)
Q Consensus        49 ~~~~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~  128 (164)
                      ..+..++|+++|.+        ++++.+++++.+|++.|.+++++++||+  |++|+++|+||.+|+++.+.. +.....
T Consensus        12 ~~l~~~~v~~im~~--------~~~v~~~~~~~~a~~~m~~~~~~~~~Vv--d~~~~~~Givt~~dl~~~~~~-~~~~~~   80 (159)
T 3fv6_A           12 DKLKKLQVKDFQSI--------PVVIHENVSVYDAICTMFLEDVGTLFVV--DRDAVLVGVLSRKDLLRASIG-QQELTS   80 (159)
T ss_dssp             HHHTTCBGGGSCBC--------CCEEETTSBHHHHHHHHHHHTCSEEEEE--CTTSCEEEEEEHHHHHHHHTS-CSCTTT
T ss_pred             HHHhhCCHHHHcCC--------CEEECCCCcHHHHHHHHHHCCCCEEEEE--cCCCcEEEEEeHHHHHHHhhc-cCcccC
Confidence            34577899999986        5699999999999999999999999999  778999999999999776543 223356


Q ss_pred             cccccccccCCCeEEEcCCCCHHHHHHHHHhCCC
Q 031190          129 TKVGDIMTEENKLITVSPDTKVLRAMQLMTGHML  162 (164)
Q Consensus       129 ~~v~~vm~~~~~~~~v~~~~~l~e~~~~m~~~~~  162 (164)
                      .++.++|.+.++++++++++++.+|+++|.++++
T Consensus        81 ~~v~~~m~~~~~~~~v~~~~~l~~a~~~m~~~~~  114 (159)
T 3fv6_A           81 VPVHIIMTRMPNITVCRREDYVMDIAKHLIEKQI  114 (159)
T ss_dssp             CBGGGTSEETTSCCCBCTTSBHHHHHHHHHHHTC
T ss_pred             cCHHHHHcCCCCcEEECCCCCHHHHHHHHHHcCC
Confidence            7999999972238899999999999999988776

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*

Probab=99.58  E-value=9.2e-15  Score=101.42  Aligned_cols=99  Identities=23%  Similarity=0.390  Sum_probs=85.4

Q ss_pred             ccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCccccccc
Q 031190           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGD  133 (164)
Q Consensus        54 ~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~v~~  133 (164)
                      ++|+++|.+..     ++.++.+++++.+|++.|.+++++++||+  |++|+++|+||.+|+++.+. .+......++.+
T Consensus        28 ~~v~dim~~~~-----~~~~v~~~~~~~~a~~~m~~~~~~~~~Vv--d~~~~~~Givt~~dl~~~~~-~~~~~~~~~v~~   99 (149)
T 3k2v_A           28 LRVNDIMHTGD-----EIPHVGLQATLRDALLEITRKNLGMTAIC--DDDMNIIGIFTDGDLRRVFD-TGVDMRDASIAD   99 (149)
T ss_dssp             SBGGGTSBCGG-----GSCEECTTCBHHHHHHHHHHHTSSEEEEE--CTTCBEEEEEEHHHHHHHHC-SSSCCTTCBHHH
T ss_pred             cCHHHHhcCCC-----CCeEECCCCcHHHHHHHHHhCCCcEEEEE--CCCCcEEEEecHHHHHHHHh-cCCCcccCcHHH
Confidence            68999998622     28999999999999999999999999999  77899999999999976543 332335678999


Q ss_pred             ccccCCCeEEEcCCCCHHHHHHHHHhCCC
Q 031190          134 IMTEENKLITVSPDTKVLRAMQLMTGHML  162 (164)
Q Consensus       134 vm~~~~~~~~v~~~~~l~e~~~~m~~~~~  162 (164)
                      +|.+  +++++++++++.++++.|.++++
T Consensus       100 ~m~~--~~~~v~~~~~l~~a~~~m~~~~~  126 (149)
T 3k2v_A          100 VMTR--GGIRIRPGTLAVDALNLMQSRHI  126 (149)
T ss_dssp             HSEE--SCCEECTTCBHHHHHHHHHHHTC
T ss_pred             HcCC--CCeEECCCCCHHHHHHHHHHcCC
Confidence            9998  58999999999999999998775

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A

Probab=99.58  E-value=3.4e-15  Score=101.42  Aligned_cols=100  Identities=23%  Similarity=0.450  Sum_probs=84.9

Q ss_pred             ccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCccccc
Q 031190           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKV  131 (164)
Q Consensus        52 ~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~v  131 (164)
                      ...+++++|.+       ++.++.+++++.+|++.|.+++++++||+  |++|+++|+|+.+|+++.+...+......++
T Consensus         6 ~~~~v~~im~~-------~~~~v~~~~~~~~a~~~~~~~~~~~~~Vv--d~~~~~~Givt~~dl~~~~~~~~~~~~~~~v   76 (133)
T 1y5h_A            6 TMTTARDIMNA-------GVTCVGEHETLTAAAQYMREHDIGALPIC--GDDDRLHGMLTDRDIVIKGLAAGLDPNTATA   76 (133)
T ss_dssp             --CCHHHHSEE-------TCCCEETTSBHHHHHHHHHHHTCSEEEEE--CGGGBEEEEEEHHHHHHTTGGGTCCTTTSBH
T ss_pred             hhcCHHHHhcC-------CceEeCCCCCHHHHHHHHHHhCCCeEEEE--CCCCeEEEEEeHHHHHHHHHhcCCCccccCH
Confidence            44689999987       59999999999999999999999999999  7789999999999997444433333346789


Q ss_pred             ccccccCCCeEEEcCCCCHHHHHHHHHhCCC
Q 031190          132 GDIMTEENKLITVSPDTKVLRAMQLMTGHML  162 (164)
Q Consensus       132 ~~vm~~~~~~~~v~~~~~l~e~~~~m~~~~~  162 (164)
                      .++|.+  +++++++++++.++++.|.++++
T Consensus        77 ~~~m~~--~~~~v~~~~~l~~~~~~m~~~~~  105 (133)
T 1y5h_A           77 GELARD--SIYYVDANASIQEMLNVMEEHQV  105 (133)
T ss_dssp             HHHHTT--CCCCEETTCCHHHHHHHHHHHTC
T ss_pred             HHHhcC--CCEEECCCCCHHHHHHHHHHcCC
Confidence            999988  58999999999999999988775

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*

Probab=99.58  E-value=1e-14  Score=97.51  Aligned_cols=93  Identities=26%  Similarity=0.370  Sum_probs=82.5

Q ss_pred             ccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCccccccc
Q 031190           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGD  133 (164)
Q Consensus        54 ~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~v~~  133 (164)
                      ++|+++|.+       ++.++.+++++.+|++.|.+++++++||+  |++|+++|+|+.+|+++.+..     ...++.+
T Consensus         1 ~~v~~im~~-------~~~~v~~~~~~~~a~~~~~~~~~~~~~Vv--d~~~~~~G~vt~~dl~~~~~~-----~~~~v~~   66 (122)
T 3kpb_A            1 TLVKDILSK-------PPITAHSNISIMEAAKILIKHNINHLPIV--DEHGKLVGIITSWDIAKALAQ-----NKKTIEE   66 (122)
T ss_dssp             CBHHHHCCS-------CCCCEETTSBHHHHHHHHHHHTCSCEEEE--CTTSBEEEEECHHHHHHHHHT-----TCCBGGG
T ss_pred             CchHHhhCC-------CCEEeCCCCcHHHHHHHHHHcCCCeEEEE--CCCCCEEEEEEHHHHHHHHHh-----cccCHHH
Confidence            478999998       59999999999999999999999999999  788999999999999776542     2348999


Q ss_pred             ccccCCCeEEEcCCCCHHHHHHHHHhCCC
Q 031190          134 IMTEENKLITVSPDTKVLRAMQLMTGHML  162 (164)
Q Consensus       134 vm~~~~~~~~v~~~~~l~e~~~~m~~~~~  162 (164)
                      +|.+  ++.++++++++.++++.|.++++
T Consensus        67 ~~~~--~~~~v~~~~~l~~~~~~~~~~~~   93 (122)
T 3kpb_A           67 IMTR--NVITAHEDEPVDHVAIKMSKYNI   93 (122)
T ss_dssp             TSBS--SCCCEETTSBHHHHHHHHHHHTC
T ss_pred             HhcC--CCeEECCCCCHHHHHHHHHHhCC
Confidence            9988  58999999999999999988765

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0

Probab=99.58  E-value=6.1e-15  Score=102.20  Aligned_cols=103  Identities=14%  Similarity=0.236  Sum_probs=86.9

Q ss_pred             cccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcC----CCC
Q 031190           51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQG----RSS  126 (164)
Q Consensus        51 ~~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~----~~~  126 (164)
                      +..++|+++|.+.+     ++.++.+++++.+|++.|.+++++++||+  |++|+++|+||.+|+++.+....    ...
T Consensus        12 l~~~~v~~im~~~~-----~~~~v~~~~~l~~a~~~~~~~~~~~~pVv--d~~~~~~Givt~~dl~~~~~~~~~~~~~~~   84 (150)
T 3lqn_A           12 FQQIFVKDLMISSE-----KVAHVQIGNGLEHALLVLVKSGYSAIPVL--DPMYKLHGLISTAMILDGILGLERIEFERL   84 (150)
T ss_dssp             HHHCBHHHHSEEGG-----GSCCBCTTSBHHHHHHHHHHHTCSEEEEE--CTTCBEEEEEEHHHHHHHTBCSSSBCGGGG
T ss_pred             hhcCChhhcccCCC-----ceEEECCCCcHHHHHHHHHHcCCcEEEEE--CCCCCEEEEEEHHHHHHHHHhhcccchhHH
Confidence            56789999999522     48999999999999999999999999999  78899999999999977553211    012


Q ss_pred             cccccccccccCCCeEEEcCCCCHHHHHHHHHhCCC
Q 031190          127 KSTKVGDIMTEENKLITVSPDTKVLRAMQLMTGHML  162 (164)
Q Consensus       127 ~~~~v~~vm~~~~~~~~v~~~~~l~e~~~~m~~~~~  162 (164)
                      ...++.++|.+  +++++++++++.+++++|.++++
T Consensus        85 ~~~~v~~~m~~--~~~~v~~~~~l~~a~~~~~~~~~  118 (150)
T 3lqn_A           85 EEMKVEQVMKQ--DIPVLKLEDSFAKALEMTIDHPF  118 (150)
T ss_dssp             GGCBGGGTCBS--SCCEEETTCBHHHHHHHHHHCSE
T ss_pred             hcCCHHHHhcC--CCceeCCCCCHHHHHHHHHhCCE
Confidence            45789999998  58999999999999999988764

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1

Probab=99.58  E-value=1.2e-14  Score=97.38  Aligned_cols=96  Identities=23%  Similarity=0.358  Sum_probs=83.3

Q ss_pred             ccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCccccccc
Q 031190           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGD  133 (164)
Q Consensus        54 ~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~v~~  133 (164)
                      ++++++|.+       ++.++.+++++.+|++.|.+++++++||+  | +|+++|+|+.+|+++.+. .+......++.+
T Consensus         1 m~v~~~m~~-------~~~~v~~~~~~~~a~~~~~~~~~~~~~Vv--d-~~~~~G~it~~dl~~~~~-~~~~~~~~~v~~   69 (125)
T 1pbj_A            1 MRVEDVMVT-------DVDTIDITASLEDVLRNYVENAKGSSVVV--K-EGVRVGIVTTWDVLEAIA-EGDDLAEVKVWE   69 (125)
T ss_dssp             -CHHHHCBC-------SCCEEETTCBHHHHHHHHHHHCCCEEEEE--E-TTEEEEEEEHHHHHHHHH-HTCCTTTSBHHH
T ss_pred             CCHHHhcCC-------CceEECCCCcHHHHHHHHHHcCCCEEEEE--e-CCeeEEEEeHHHHHHHHh-cCCcccccCHHH
Confidence            478999987       59999999999999999999999999999  7 899999999999976544 332334678999


Q ss_pred             ccccCCCeEEEcCCCCHHHHHHHHHhCCC
Q 031190          134 IMTEENKLITVSPDTKVLRAMQLMTGHML  162 (164)
Q Consensus       134 vm~~~~~~~~v~~~~~l~e~~~~m~~~~~  162 (164)
                      +|.+  ++.++++++++.++++.|.++++
T Consensus        70 ~m~~--~~~~v~~~~~l~~~~~~~~~~~~   96 (125)
T 1pbj_A           70 VMER--DLVTISPRATIKEAAEKMVKNVV   96 (125)
T ss_dssp             HCBC--GGGEECTTSCHHHHHHHHHHHTC
T ss_pred             HcCC--CCeEECCCCCHHHHHHHHHhcCC
Confidence            9998  58999999999999999988765

>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}

Probab=99.58  E-value=7.4e-15  Score=102.41  Aligned_cols=101  Identities=20%  Similarity=0.330  Sum_probs=86.1

Q ss_pred             CcccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEE-ecCCCCcEEEEEehHHHHHHHHHcCCCCcc
Q 031190           50 GFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVV-KPGEQKSVAGIITERDYLRKIIVQGRSSKS  128 (164)
Q Consensus        50 ~~~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv-~~d~~~~~vGivt~~dil~~~~~~~~~~~~  128 (164)
                      .+.+.+|+++|.+++     ++.++.+++++.+|++.|.+++++++||+ + +++|+++|+||.+|+++.+...    ..
T Consensus        16 ~l~~~~v~~iM~~~~-----~~~~v~~~~~~~~a~~~m~~~~~~~~pVv~d-~~~~~lvGivt~~dl~~~~~~~----~~   85 (153)
T 3oco_A           16 EMNDKVASDVMVDRT-----SMSVVDVDETIADALLLYLEEQYSRFPVTAD-NDKDKIIGYAYNYDIVRQARID----DK   85 (153)
T ss_dssp             HHHHCBHHHHSEEGG-----GCCCEETTSBHHHHHHHHHHHCCSEEEEEET-TEEEEEEEEEEHHHHHHHHHHH----TT
T ss_pred             ccCCCEeeeEecchh-----heEEEcCCCCHHHHHHHHHhCCCCEEEEEEC-CCCCcEEEEEEHHHHHhHHhcC----CC
Confidence            356789999998632     38999999999999999999999999999 4 3358999999999998766533    26


Q ss_pred             cccccccccCCCeEEEcCCCCHHHHHHHHHhCCCC
Q 031190          129 TKVGDIMTEENKLITVSPDTKVLRAMQLMTGHMLL  163 (164)
Q Consensus       129 ~~v~~vm~~~~~~~~v~~~~~l~e~~~~m~~~~~~  163 (164)
                      .+++++| +  +++++++++++.+++..|.+++++
T Consensus        86 ~~v~~~m-~--~~~~v~~~~~l~~~~~~m~~~~~~  117 (153)
T 3oco_A           86 AKISTIM-R--DIVSVPENMKVPDVMEEMSAHRVP  117 (153)
T ss_dssp             SBGGGTC-B--CCEEEETTSBHHHHHHHHHHTTCS
T ss_pred             CcHHHHh-C--CCeEECCCCCHHHHHHHHHHcCCc
Confidence            7899999 5  499999999999999999988763

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1

Probab=99.57  E-value=2.2e-14  Score=100.79  Aligned_cols=101  Identities=18%  Similarity=0.223  Sum_probs=85.7

Q ss_pred             ccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHc-------CC
Q 031190           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQ-------GR  124 (164)
Q Consensus        52 ~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~-------~~  124 (164)
                      ..++|+++|.+       ++.++.+++++.+|+++|.+++++++||+  |++|+++|+||.+|+++.+...       ..
T Consensus         3 ~~~~v~dim~~-------~~~~v~~~~tl~~a~~~m~~~~~~~~pVv--d~~~~lvGivt~~dl~~~~~~~~~~~~~~~~   73 (160)
T 2o16_A            3 LMIKVEDMMTR-------HPHTLLRTHTLNDAKHLMEALDIRHVPIV--DANKKLLGIVSQRDLLAAQESSLQRSAQGDS   73 (160)
T ss_dssp             CCCBGGGTSEE-------SCCCBCTTSBHHHHHHHHHHHTCSEEEEE--CTTCBEEEEEEHHHHHHHHHHHCC-------
T ss_pred             CcCcHHHHhcC-------CCeEECCCCcHHHHHHHHHHcCCCEEEEE--cCCCcEEEEEeHHHHHHHHHHhhcccccccc
Confidence            35689999987       59999999999999999999999999999  7789999999999998765431       01


Q ss_pred             CCcccccccccccCCCeEEEcCCCCHHHHHHHHHhCCCC
Q 031190          125 SSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTGHMLL  163 (164)
Q Consensus       125 ~~~~~~v~~vm~~~~~~~~v~~~~~l~e~~~~m~~~~~~  163 (164)
                      .....++.++|.+  +++++++++++.+|+.+|.++++.
T Consensus        74 ~~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~  110 (160)
T 2o16_A           74 LAFETPLFEVMHT--DVTSVAPQAGLKESAIYMQKHKIG  110 (160)
T ss_dssp             --CCCBHHHHSCS--CEEEBCTTSBHHHHHHHHHHTTCS
T ss_pred             hhcccCHHHHhcC--CCeEECCCCCHHHHHHHHHHhCCC
Confidence            1246789999998  599999999999999999988753

>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}

Probab=99.56  E-value=3.1e-15  Score=104.81  Aligned_cols=100  Identities=13%  Similarity=0.236  Sum_probs=85.2

Q ss_pred             CcccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCC-CcEEEEEehHHHHHHHHHcCCCCcc
Q 031190           50 GFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ-KSVAGIITERDYLRKIIVQGRSSKS  128 (164)
Q Consensus        50 ~~~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~-~~~vGivt~~dil~~~~~~~~~~~~  128 (164)
                      .+...+|+++|+++.     +++++++++++.+|++.|.+++++++||+  |++ ++++|+||.+|+++.+.    ....
T Consensus        34 ~l~~~~v~diM~~~~-----~~~~v~~~~~i~~a~~~m~~~~~~~~pVv--d~~~~~lvGivt~~dl~~~~~----~~~~  102 (156)
T 3oi8_A           34 DFSDLEVRDAMITRS-----RMNVLKENDSIERITAYVIDTAHSRFPVI--GEDKDEVLGILHAKDLLKYMF----NPEQ  102 (156)
T ss_dssp             HHTTCBGGGTCEEGG-----GCCCEETTCCHHHHHHHHHHHCCSEEEEE--SSSTTCEEEEEEGGGGGGGSS----CGGG
T ss_pred             ccCCCCHhheeeeHH-----HeEEECCCCCHHHHHHHHHHCCCCEEEEE--cCCCCcEEEEEEHHHHHHHHH----cCCc
Confidence            467899999998632     38999999999999999999999999999  666 59999999999976431    1146


Q ss_pred             cccccccccCCCeEEEcCCCCHHHHHHHHHhCCCC
Q 031190          129 TKVGDIMTEENKLITVSPDTKVLRAMQLMTGHMLL  163 (164)
Q Consensus       129 ~~v~~vm~~~~~~~~v~~~~~l~e~~~~m~~~~~~  163 (164)
                      .++.++|++   ++++++++++.++++.|.+++++
T Consensus       103 ~~v~~im~~---~~~v~~~~~l~~a~~~m~~~~~~  134 (156)
T 3oi8_A          103 FHLKSILRP---AVFVPEGKSLTALLKEFREQRNH  134 (156)
T ss_dssp             CCHHHHCBC---CCEEETTSBHHHHHHHHHHTTCC
T ss_pred             ccHHHHcCC---CEEECCCCCHHHHHHHHHhcCCe
Confidence            789999976   88999999999999999988763

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A

Probab=99.56  E-value=3.2e-14  Score=97.63  Aligned_cols=97  Identities=20%  Similarity=0.267  Sum_probs=83.5

Q ss_pred             cccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCC--cEEEEEehHHHHHHHHHcCCCCcccc
Q 031190           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQK--SVAGIITERDYLRKIIVQGRSSKSTK  130 (164)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~--~~vGivt~~dil~~~~~~~~~~~~~~  130 (164)
                      .++++++|.+       ++.++.+++++.+|++.|.+++++++||+  |+++  +++|+||.+|+++.+. .+. ....+
T Consensus         4 ~~~v~~im~~-------~~~~v~~~~~~~~a~~~~~~~~~~~~~Vv--d~~~~~~~~Givt~~dl~~~~~-~~~-~~~~~   72 (141)
T 2rih_A            4 AIRTSELLKR-------PPVSLPETATIREVATELAKNRVGLAVLT--ARDNPKRPVAVVSERDILRAVA-QRL-DLDGP   72 (141)
T ss_dssp             -CBGGGGCCS-------CCEEEETTCBHHHHHHHHHHHTCSEEEEE--ETTEEEEEEEEEEHHHHHHHHH-TTC-CTTSB
T ss_pred             ceEHHHHhcC-------CCeEeCCCCcHHHHHHHHHHcCCCEEEEE--cCCCcceeEEEEEHHHHHHHHh-cCC-CCCCC
Confidence            4689999987       59999999999999999999999999999  6677  9999999999977654 322 24678


Q ss_pred             cccccccCCCeEEEcCCCCHHHHHHHHHhCCCC
Q 031190          131 VGDIMTEENKLITVSPDTKVLRAMQLMTGHMLL  163 (164)
Q Consensus       131 v~~vm~~~~~~~~v~~~~~l~e~~~~m~~~~~~  163 (164)
                      +.++|.+  ++.+++++ ++.+++++|.+++++
T Consensus        73 v~~~m~~--~~~~v~~~-~l~~a~~~m~~~~~~  102 (141)
T 2rih_A           73 AMPIANS--PITVLDTD-PVHVAAEKMRRHNIR  102 (141)
T ss_dssp             SGGGCBC--CCEEETTS-BHHHHHHHHHHHTCS
T ss_pred             HHHHcCC--CCeEEcCC-CHHHHHHHHHHcCCe
Confidence            9999988  59999999 999999999887753

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1

Probab=99.55  E-value=2e-14  Score=97.59  Aligned_cols=97  Identities=34%  Similarity=0.520  Sum_probs=84.5

Q ss_pred             ccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCccccc
Q 031190           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKV  131 (164)
Q Consensus        52 ~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~v  131 (164)
                      .+.+++++|.+       ++.++.+++++.+|++.|.+++++++||+  | +|+++|+|+.+|+++.+. .+. ....++
T Consensus         2 ~~~~v~~im~~-------~~~~v~~~~~~~~a~~~~~~~~~~~~~Vv--d-~~~~~Givt~~dl~~~~~-~~~-~~~~~v   69 (133)
T 2ef7_A            2 EEEIVKEYMKT-------QVISVTKDAKLNDIAKVMTEKNIGSVIVV--D-GNKPVGIITERDIVKAIG-KGK-SLETKA   69 (133)
T ss_dssp             CCCBGGGTSBC-------SCCEEETTCBHHHHHHHHHHHTCSEEEEE--E-TTEEEEEEEHHHHHHHHH-TTC-CTTCBG
T ss_pred             CcccHHHhccC-------CCEEECCCCcHHHHHHHHHhcCCCEEEEE--E-CCEEEEEEcHHHHHHHHh-cCC-CcccCH
Confidence            46789999987       59999999999999999999999999999  7 789999999999976554 322 246789


Q ss_pred             ccccccCCCeEEEcCCCCHHHHHHHHHhCCC
Q 031190          132 GDIMTEENKLITVSPDTKVLRAMQLMTGHML  162 (164)
Q Consensus       132 ~~vm~~~~~~~~v~~~~~l~e~~~~m~~~~~  162 (164)
                      .++|.+  ++.++++++++.++++.|.++++
T Consensus        70 ~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~   98 (133)
T 2ef7_A           70 EEFMTA--SLITIREDSPITGALALMRQFNI   98 (133)
T ss_dssp             GGTSEE--CCCCEETTSBHHHHHHHHHHHTC
T ss_pred             HHHcCC--CCEEECCCCCHHHHHHHHHHcCC
Confidence            999988  58999999999999999988775

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A

Probab=99.55  E-value=3e-14  Score=102.28  Aligned_cols=100  Identities=20%  Similarity=0.341  Sum_probs=86.2

Q ss_pred             ccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCccccc
Q 031190           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKV  131 (164)
Q Consensus        52 ~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~v  131 (164)
                      -.++|+++|.+       +++++.+++++.+|+++|.+++++.+||+  |++|+++|+||.+|+++.+..........++
T Consensus         7 ~~~~v~~im~~-------~~~~v~~~~~l~ea~~~~~~~~~~~~pVv--d~~g~~vGivt~~dl~~~~~~~~~~~~~~~v   77 (184)
T 1pvm_A            7 MFMRVEKIMNS-------NFKTVNWNTTVFDAVKIMNENHLYGLVVK--DDNGNDVGLLSERSIIKRFIPRNKKPDEVPI   77 (184)
T ss_dssp             CCCBGGGTSBT-------TCCEEETTCBHHHHHHHHHHHTCCEEEEE--CTTSCEEEEEEHHHHHHHTGGGCCCGGGSBG
T ss_pred             cccCHHHhcCC-------CCeEECCCCcHHHHHHHHHHcCCCEEEEE--cCCCcEEEEEeHHHHHHHHhhcccCcccCCH
Confidence            34789999987       59999999999999999999999999999  7779999999999998755432223356789


Q ss_pred             ccccccCCCeEEEcCCCCHHHHHHHHHhCCC
Q 031190          132 GDIMTEENKLITVSPDTKVLRAMQLMTGHML  162 (164)
Q Consensus       132 ~~vm~~~~~~~~v~~~~~l~e~~~~m~~~~~  162 (164)
                      .++|.+  +++++++++++.+++++|.++++
T Consensus        78 ~~im~~--~~~~v~~~~~l~~a~~~m~~~~~  106 (184)
T 1pvm_A           78 RLVMRK--PIPKVKSDYDVKDVAAYLSENGL  106 (184)
T ss_dssp             GGTSBS--SCCEEETTCBHHHHHHHHHHHTC
T ss_pred             HHHhCC--CCcEECCCCCHHHHHHHHHHcCC
Confidence            999998  58999999999999999988765

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}

Probab=99.54  E-value=4.1e-14  Score=98.75  Aligned_cols=100  Identities=48%  Similarity=0.703  Sum_probs=85.7

Q ss_pred             ccHHHHhhhcC---CCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCcccc
Q 031190           54 TTISDILKAKG---KGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTK  130 (164)
Q Consensus        54 ~~v~dim~~~~---~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~  130 (164)
                      .+|+++|.++.   .    ++.++.+++++.+|++.|.+++++++||+  + +|+++|+||.+|+++.+..........+
T Consensus         7 ~~v~dim~~~~~~~~----~~~~v~~~~~~~~a~~~~~~~~~~~~~V~--~-~~~~~Givt~~dl~~~~~~~~~~~~~~~   79 (157)
T 4fry_A            7 TTVAQILKAKPDSGR----TIYTVTKNDFVYDAIKLMAEKGIGALLVV--D-GDDIAGIVTERDYARKVVLQERSSKATR   79 (157)
T ss_dssp             CBHHHHHHHSTTTTC----CCCEEETTSBHHHHHHHHHHHTCSEEEEE--S-SSSEEEEEEHHHHHHHSGGGTCCSSSCB
T ss_pred             HHHHHHHhcccccCC----CCeEECCCCcHHHHHHHHHHcCCCEEEEe--e-CCEEEEEEEHHHHHHHHHhccCCccccC
Confidence            57999999741   1    47999999999999999999999999998  5 7899999999999876654443335789


Q ss_pred             cccccccCCCeEEEcCCCCHHHHHHHHHhCCC
Q 031190          131 VGDIMTEENKLITVSPDTKVLRAMQLMTGHML  162 (164)
Q Consensus       131 v~~vm~~~~~~~~v~~~~~l~e~~~~m~~~~~  162 (164)
                      +.++|.+  ++.++++++++.+++++|.++++
T Consensus        80 v~~~m~~--~~~~v~~~~~l~~~~~~m~~~~~  109 (157)
T 4fry_A           80 VEEIMTA--KVRYVEPSQSTDECMALMTEHRM  109 (157)
T ss_dssp             HHHHSBS--SCCCBCTTSBHHHHHHHHHHHTC
T ss_pred             HHHHcCC--CCcEECCCCcHHHHHHHHHHcCC
Confidence            9999998  58999999999999999988775

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}

Probab=99.53  E-value=3.5e-14  Score=96.85  Aligned_cols=98  Identities=23%  Similarity=0.410  Sum_probs=84.6

Q ss_pred             cccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHH-HHHHHHcCCCCccc
Q 031190           51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDY-LRKIIVQGRSSKST  129 (164)
Q Consensus        51 ~~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~di-l~~~~~~~~~~~~~  129 (164)
                      +.+.+++++|.+       ++.++.+++++.+|++.|.+++++++||+  |++|+++|+|+.+|+ ++.+. .+ .....
T Consensus         5 l~~~~v~~im~~-------~~~~v~~~~~~~~a~~~~~~~~~~~~~Vv--d~~~~~~Givt~~dl~~~~~~-~~-~~~~~   73 (138)
T 2p9m_A            5 LKNIKVKDVMTK-------NVITAKRHEGVVEAFEKMLKYKISSLPVI--DDENKVIGIVTTTDIGYNLIR-DK-YTLET   73 (138)
T ss_dssp             CTTCBGGGTSBC-------SCCCEETTSBHHHHHHHHHHHTCCEEEEE--CTTCBEEEEEEHHHHHHHHTT-TC-CCSSC
T ss_pred             cccCCHHHhhcC-------CceEECCCCcHHHHHHHHHHCCCcEEEEE--CCCCeEEEEEEHHHHHHHHHh-hc-ccCCc
Confidence            457899999987       59999999999999999999999999999  778999999999999 76443 22 23467


Q ss_pred             ccccccccCCCeEEEcCCCCHHHHHHHHHhCC
Q 031190          130 KVGDIMTEENKLITVSPDTKVLRAMQLMTGHM  161 (164)
Q Consensus       130 ~v~~vm~~~~~~~~v~~~~~l~e~~~~m~~~~  161 (164)
                      ++.++|.+  ++.++++++++.++++.|.+++
T Consensus        74 ~v~~~m~~--~~~~v~~~~~l~~~~~~~~~~~  103 (138)
T 2p9m_A           74 TIGDVMTK--DVITIHEDASILEAIKKMDISG  103 (138)
T ss_dssp             BHHHHSCS--SCCCEETTSBHHHHHHHHTCC-
T ss_pred             CHHHHhCC--CcEEECCCCCHHHHHHHHHhcC
Confidence            89999998  5899999999999999998877

>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}

Probab=99.53  E-value=3e-14  Score=101.70  Aligned_cols=99  Identities=17%  Similarity=0.253  Sum_probs=83.5

Q ss_pred             CcccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCC-CcEEEEEehHHHHHHHHHcCCCCcc
Q 031190           50 GFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ-KSVAGIITERDYLRKIIVQGRSSKS  128 (164)
Q Consensus        50 ~~~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~-~~~vGivt~~dil~~~~~~~~~~~~  128 (164)
                      .+...+|+++|++++     +++++.+++++.+|++.|.+++++++||+  |++ |+++|+||.+|++..+...    ..
T Consensus        32 ~l~~~~v~diM~~~~-----~v~~v~~~~tv~ea~~~m~~~~~~~~pVv--d~~~~~lvGivt~~Dl~~~~~~~----~~  100 (173)
T 3ocm_A           32 TLAERSIRSIMTPRT-----DVSWVNIDDDAATIRQQLTAAPHSFFPVC--RGSLDEVVGIGRAKDLVADLITE----GR  100 (173)
T ss_dssp             HHTTSCSTTTSEEGG-----GCCCEETTSCHHHHHHHHHHSSCSEEEEE--SSSTTSEEEEEEHHHHHHHHHHH----SS
T ss_pred             ccCCCCHHHhCCcHH-----HeEEEeCCCCHHHHHHHHHhCCCCEEEEE--eCCCCCEEEEEEHHHHHHHHhcC----Cc
Confidence            468899999997532     48999999999999999999999999999  665 8999999999998765432    24


Q ss_pred             cccccccccCCCeEEEcCCCCHHHHHHHHHhCCCC
Q 031190          129 TKVGDIMTEENKLITVSPDTKVLRAMQLMTGHMLL  163 (164)
Q Consensus       129 ~~v~~vm~~~~~~~~v~~~~~l~e~~~~m~~~~~~  163 (164)
                      .++. +|++   +++|++++++.+++++|.+++++
T Consensus       101 ~~v~-~~~~---~~~v~~~~~l~~al~~m~~~~~~  131 (173)
T 3ocm_A          101 VRRN-RLRD---PIIVHESIGILRLMDTLKRSRGQ  131 (173)
T ss_dssp             CCGG-GSBC---CCEECGGGCHHHHHHHHHHSTTC
T ss_pred             chhH-hcCC---CeEECCCCcHHHHHHHHHHcCCe
Confidence            5677 5544   88999999999999999998763

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}

Probab=99.52  E-value=1.1e-14  Score=98.50  Aligned_cols=97  Identities=13%  Similarity=0.179  Sum_probs=83.2

Q ss_pred             ccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCccccc
Q 031190           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKV  131 (164)
Q Consensus        52 ~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~v  131 (164)
                      .+.+++++|.+       ++.++.+++++.+|++.|.+++++++||+  |+ |+++|+||.+|+++.+. .+ .....++
T Consensus         3 ~s~~v~~~m~~-------~~~~v~~~~~~~~a~~~~~~~~~~~~~Vv--d~-~~~~Givt~~dl~~~~~-~~-~~~~~~v   70 (128)
T 3gby_A            3 ASVTFSYLAET-------DYPVFTLGGSTADAARRLAASGCACAPVL--DG-ERYLGMVHLSRLLEGRK-GW-PTVKEKL   70 (128)
T ss_dssp             TTCBGGGGCBC-------CSCCEETTSBHHHHHHHHHHHTCSEEEEE--ET-TEEEEEEEHHHHHTTCS-SS-CCTTCBC
T ss_pred             cceEHHHhhcC-------CcceECCCCCHHHHHHHHHHCCCcEEEEE--EC-CEEEEEEEHHHHHHHHh-hC-CcccCcH
Confidence            35789999998       69999999999999999999999999999  66 99999999999976432 11 1123679


Q ss_pred             ccccccCCCeEEEcCCCCHHHHHHHHHhCCC
Q 031190          132 GDIMTEENKLITVSPDTKVLRAMQLMTGHML  162 (164)
Q Consensus       132 ~~vm~~~~~~~~v~~~~~l~e~~~~m~~~~~  162 (164)
                      .++|.+  ++.++++++++.++++.|.++++
T Consensus        71 ~~~m~~--~~~~v~~~~~l~~~~~~~~~~~~   99 (128)
T 3gby_A           71 GEELLE--TVRSYRPGEQLFDNLISVAAAKC   99 (128)
T ss_dssp             CGGGCB--CCCCBCTTSBGGGSHHHHHHCSS
T ss_pred             HHHccC--CCcEECCCCCHHHHHHHHHhCCC
Confidence            999998  58899999999999999998876

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1

Probab=99.51  E-value=4.7e-14  Score=98.76  Aligned_cols=103  Identities=11%  Similarity=0.194  Sum_probs=86.0

Q ss_pred             cccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCC----CC
Q 031190           51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGR----SS  126 (164)
Q Consensus        51 ~~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~----~~  126 (164)
                      +...+|+++|.++.     ++.++.+++++.+|++.|.+++++++||+  |++|+++|+||.+|+++.+.....    ..
T Consensus        11 l~~~~v~~im~~~~-----~~~~v~~~~~l~~a~~~m~~~~~~~~pVv--d~~~~lvGivt~~dl~~~~~~~~~~~~~~~   83 (159)
T 1yav_A           11 LLEATVGQFMIEAD-----KVAHVQVGNNLEHALLVLTKTGYTAIPVL--DPSYRLHGLIGTNMIMNSIFGLERIEFEKL   83 (159)
T ss_dssp             CTTCBHHHHSEEGG-----GSCCEETTCBHHHHHHHHHHHCCSEEEEE--CTTCBEEEEEEHHHHHHHHBCSSSBCGGGT
T ss_pred             HhHhhHHHHhCCcc-----ceEEECCCCcHHHHHHHHHhCCCcEEEEE--CCCCCEEEEeEHHHHHHHhhhhcccchhhh
Confidence            46789999998622     28999999999999999999999999999  778899999999999775432110    02


Q ss_pred             cccccccccccCCCeEEEcCCCCHHHHHHHHHhCCC
Q 031190          127 KSTKVGDIMTEENKLITVSPDTKVLRAMQLMTGHML  162 (164)
Q Consensus       127 ~~~~v~~vm~~~~~~~~v~~~~~l~e~~~~m~~~~~  162 (164)
                      ...++.++|.+  ++.++.+++++.+++++|.++++
T Consensus        84 ~~~~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~  117 (159)
T 1yav_A           84 DQITVEEVMLT--DIPRLHINDPIMKGFGMVINNGF  117 (159)
T ss_dssp             TTSBHHHHSBC--SCCEEETTSBHHHHHHHTTTCSE
T ss_pred             ccCCHHHhcCC--CCceEcCCCCHHHHHHHHHhCCE
Confidence            46789999998  58999999999999999987754

>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}

Probab=99.51  E-value=2.8e-14  Score=87.28  Aligned_cols=68  Identities=31%  Similarity=0.533  Sum_probs=59.1

Q ss_pred             ceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCcccccccccccCCCeEE
Q 031190           71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLIT  143 (164)
Q Consensus        71 ~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~v~~vm~~~~~~~~  143 (164)
                      ++++.+++|+.+|+++|.+++++++||+  | +|+++|+||.+|+++++..++....+.+++++|+++  +++
T Consensus         2 ~vtv~p~~tv~ea~~~M~~~~i~~~~V~--d-~~~lvGIvT~~Di~~~~~~~~~~~~~~~V~~iMt~~--~iT   69 (70)
T 3ghd_A            2 AIVVQPKDTVDRVAKILSRNKAGSAVVM--E-GDEILGVVTERDILDKVVAKGKNPKEVKVEEIMTKN--PVK   69 (70)
T ss_dssp             EEEECTTCBHHHHHHHHHHTTCSEEEEE--E-TTEEEEEEEHHHHHHHTTTTTCCGGGCBGGGTCEEC--TTC
T ss_pred             CEEECCCCcHHHHHHHHHHcCCCEEEEE--E-CCEEEEEEEHHHHHHHHHhcCCCcccCCHHHhcCCC--CeE
Confidence            7899999999999999999999999999  4 589999999999988776655555677999999994  554

>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1

Probab=99.50  E-value=5.6e-14  Score=107.84  Aligned_cols=96  Identities=21%  Similarity=0.345  Sum_probs=85.5

Q ss_pred             CcccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHc-----CCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCC
Q 031190           50 GFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQH-----NVGALVVVKPGEQKSVAGIITERDYLRKIIVQGR  124 (164)
Q Consensus        50 ~~~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~-----~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~  124 (164)
                      .+...+|+++|.+       +++++.+++++.+|++.|.++     +++++||+  |++|+++|+||.+|++..      
T Consensus       133 ~~~~~~v~~iM~~-------~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~pVv--d~~~~lvGivt~~dll~~------  197 (286)
T 2oux_A          133 HYEDETAGAIMTT-------EFVSIVANQTVRSAMYVLKNQADMAETIYYVYVV--DQENHLVGVISLRDLIVN------  197 (286)
T ss_dssp             TSCTTBHHHHCBS-------CCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEE--CTTCBEEEEEEHHHHTTS------
T ss_pred             cCChHHHHHhCCC-------CceEECCCCcHHHHHHHHHHcccCccceeEEEEE--cCCCeEEEEEEHHHHHcC------
Confidence            4678999999987       599999999999999999987     78899999  778999999999999641      


Q ss_pred             CCcccccccccccCCCeEEEcCCCCHHHHHHHHHhCCCC
Q 031190          125 SSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTGHMLL  163 (164)
Q Consensus       125 ~~~~~~v~~vm~~~~~~~~v~~~~~l~e~~~~m~~~~~~  163 (164)
                       ....++.++|.+  ++++|++++++.+++++|.+++++
T Consensus       198 -~~~~~v~~im~~--~~~~v~~~~~l~ea~~~m~~~~~~  233 (286)
T 2oux_A          198 -DDDTLIADILNE--RVISVHVGDDQEDVAQTIRDYDFL  233 (286)
T ss_dssp             -CTTSBHHHHSBS--CCCCEETTSBHHHHHHHHHHHTCS
T ss_pred             -CCCCcHHHHcCC--CCeeecCCCCHHHHHHHHHHcCCc
Confidence             246789999988  589999999999999999988763

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*

Probab=99.49  E-value=1.4e-13  Score=98.20  Aligned_cols=107  Identities=19%  Similarity=0.204  Sum_probs=85.4

Q ss_pred             cccccHHHHhhhcCCCCCCCceEe--cCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcC-----
Q 031190           51 FESTTISDILKAKGKGADGSWLWC--TTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQG-----  123 (164)
Q Consensus        51 ~~~~~v~dim~~~~~~~~~~~~~v--~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~-----  123 (164)
                      +...+|+++|.+..+   .++.++  .+++++.+|++.|.+++++++||++.|++|+++|+||.+|+++.+....     
T Consensus         8 ~~~~~v~dim~~~~~---~~~~~v~~~~~~~~~~a~~~~~~~~~~~~pVv~~d~~~~lvGiit~~dl~~~~~~~~~~~~~   84 (185)
T 2j9l_A            8 AHKTLAMDVMKPRRN---DPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIENARKKQDG   84 (185)
T ss_dssp             -CCCBHHHHSBSCTT---SCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHTSCSC
T ss_pred             hccCcHHHHhccccc---CceEEEecCCCccHHHHHHHHHhcCCCceeEEEECCCCeEEEEEEHHHHHHHHHhhcccCCC
Confidence            357899999987210   016788  9999999999999999999999992125789999999999987665321     


Q ss_pred             ------------------CCCcccccccccccCCCeEEEcCCCCHHHHHHHHHhCCC
Q 031190          124 ------------------RSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTGHML  162 (164)
Q Consensus       124 ------------------~~~~~~~v~~vm~~~~~~~~v~~~~~l~e~~~~m~~~~~  162 (164)
                                        ......++.++|.+  ++++|++++++.+|+++|.++++
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~  139 (185)
T 2j9l_A           85 VVSTSIIYFTEHSPPLPPYTPPTLKLRNILDL--SPFTVTDLTPMEIVVDIFRKLGL  139 (185)
T ss_dssp             CCTTCEEECSSSCCCCCTTCCCCEECGGGEES--SCCEEETTSBHHHHHHHHHHHTC
T ss_pred             ccccceeecccCCcccccccccCccHHHhhCc--CCeEeCCCCCHHHHHHHHHhCCC
Confidence                              01245689999988  59999999999999999988765

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}

Probab=99.49  E-value=5.4e-14  Score=97.97  Aligned_cols=103  Identities=17%  Similarity=0.262  Sum_probs=84.2

Q ss_pred             cccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcC----CCC
Q 031190           51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQG----RSS  126 (164)
Q Consensus        51 ~~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~----~~~  126 (164)
                      +...+|+++|.+..     ++.++.+++++.+|++.|.+++++++||+  |++|+++|+||.+|+++.+....    ...
T Consensus         8 l~~~~v~~im~~~~-----~~~~v~~~~~~~~a~~~m~~~~~~~~pVv--d~~~~~~Givt~~dl~~~~~~~~~~~~~~~   80 (157)
T 2emq_A            8 FMQMTVKPFLIPAD-----KVAHVQPGNYLDHALLVLTKTGYSAIPVL--DTSYKLHGLISMTMMMDAILGLERIEFERL   80 (157)
T ss_dssp             --CCBSTTTCEEGG-----GSCCBCTTSBHHHHHHHHHHSSSSEEEEE--CTTCCEEEEEEHHHHHHHSBCSSSBCGGGG
T ss_pred             HhhCcHHhhccCCc-----cceEECCCCcHHHHHHHHHHCCceEEEEE--cCCCCEEEEeeHHHHHHHHhcccccchHHh
Confidence            46789999998521     38999999999999999999999999999  77899999999999976432100    012


Q ss_pred             cccccccccccCCCeEEEcCCCCHHHHHHHHHhCCC
Q 031190          127 KSTKVGDIMTEENKLITVSPDTKVLRAMQLMTGHML  162 (164)
Q Consensus       127 ~~~~v~~vm~~~~~~~~v~~~~~l~e~~~~m~~~~~  162 (164)
                      ...++.++|.+  +++++++++++.++++.|.++++
T Consensus        81 ~~~~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~  114 (157)
T 2emq_A           81 ETMKVEEVMNR--NIPRLRLDDSLMKAVGLIVNHPF  114 (157)
T ss_dssp             GTCBGGGTCBC--CCCEEETTSBHHHHHHHHHHSSE
T ss_pred             cCCcHHHHhCC--CCceecCCCcHHHHHHHHhhCCE
Confidence            35789999998  58999999999999999988764

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}

Probab=99.49  E-value=1.7e-13  Score=95.89  Aligned_cols=104  Identities=16%  Similarity=0.209  Sum_probs=84.6

Q ss_pred             cccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCC--CCcEEEEEehHHHHHHHHHcCCC---
Q 031190           51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGE--QKSVAGIITERDYLRKIIVQGRS---  125 (164)
Q Consensus        51 ~~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~--~~~~vGivt~~dil~~~~~~~~~---  125 (164)
                      ...++|+++|.+       ++.++.+++++.+|++.|.+++++++||+  |+  +|+++|+||.+|+++.+......   
T Consensus        10 ~~~~~v~dim~~-------~~~~v~~~~~~~~a~~~~~~~~~~~~pVv--d~~~~~~~~Givt~~dl~~~~~~~~~~~~~   80 (164)
T 2pfi_A           10 SHHVRVEHFMNH-------SITTLAKDTPLEEVVKVVTSTDVTEYPLV--ESTESQILVGIVQRAQLVQALQAEPPSRAP   80 (164)
T ss_dssp             CCSCBHHHHCBC-------CCCCEETTCBHHHHHHHHHTCCCSEEEEE--SCTTTCBEEEEEEHHHHHHHHHC-------
T ss_pred             ccCCCHHHHcCC-------CCeEECCCCcHHHHHHHHHhCCCCceeEE--ecCCCCEEEEEEEHHHHHHHHHhhccccCC
Confidence            457899999988       59999999999999999999999999999  65  78999999999997765422110   


Q ss_pred             CcccccccccccC----CCeEEEcCCCCHHHHHHHHHhCCCC
Q 031190          126 SKSTKVGDIMTEE----NKLITVSPDTKVLRAMQLMTGHMLL  163 (164)
Q Consensus       126 ~~~~~v~~vm~~~----~~~~~v~~~~~l~e~~~~m~~~~~~  163 (164)
                      ....++.++|.+.    +.+.++++++++.++++.|.++++.
T Consensus        81 ~~~~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~  122 (164)
T 2pfi_A           81 GHQQCLQDILARGCPTEPVTLTLFSETTLHQAQNLFKLLNLQ  122 (164)
T ss_dssp             CCCCBHHHHHHTTCCCBCCCCCEETTCBHHHHHHHHHHTTCS
T ss_pred             cccchhhhhhcccccccCCceEECCCCcHHHHHHHHHHhCCC
Confidence            1246789999872    0168899999999999999988763

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}

Probab=99.48  E-value=4.5e-14  Score=100.32  Aligned_cols=102  Identities=21%  Similarity=0.333  Sum_probs=83.5

Q ss_pred             cccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcC---------
Q 031190           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQG---------  123 (164)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~---------  123 (164)
                      .++|+++|.++.     +++++.+++++.+|+++|.+++++++||+  |++|+++|+||.+|+++.....+         
T Consensus         3 ~~~v~dim~~~~-----~~~~v~~~~~l~~a~~~m~~~~~~~~pVv--d~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~   75 (180)
T 3sl7_A            3 GYTVGDFMTPRQ-----NLHVVKPSTSVDDALELLVEKKVTGLPVI--DDNWTLVGVVSDYDLLALDSISGRSQNDTNLF   75 (180)
T ss_dssp             CCBHHHHSEEGG-----GCCCBCTTSBHHHHHHHHHHHTCSEEEEE--CTTCBEEEEEEHHHHTCC--------------
T ss_pred             ceeHHHhcCCCC-----CceeeCCCCcHHHHHHHHHHcCCCeEEEE--CCCCeEEEEEEHHHHHhhhhhccccCCccccc
Confidence            368999998732     28999999999999999999999999999  78899999999999974211000         


Q ss_pred             -----------------CCCcccccccccccCCCeEEEcCCCCHHHHHHHHHhCCCC
Q 031190          124 -----------------RSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTGHMLL  163 (164)
Q Consensus       124 -----------------~~~~~~~v~~vm~~~~~~~~v~~~~~l~e~~~~m~~~~~~  163 (164)
                                       ......++.++|++  +++++++++++.+++++|.+++++
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~  130 (180)
T 3sl7_A           76 PDVDSTWKTFNELQKLISKTYGKVVGDLMTP--SPLVVRDSTNLEDAARLLLETKFR  130 (180)
T ss_dssp             -----CCCSHHHHHHHHHTTTTCBHHHHSEE--SCCCEETTSBHHHHHHHHTTSTTC
T ss_pred             ccccchhhhhHHHHHHHhccccccHHHHhCC--CceEeCCCCcHHHHHHHHHHcCCC
Confidence                             01235789999998  588999999999999999988763

>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}

Probab=99.48  E-value=1.1e-13  Score=95.58  Aligned_cols=103  Identities=17%  Similarity=0.245  Sum_probs=83.5

Q ss_pred             ccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHc---------
Q 031190           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQ---------  122 (164)
Q Consensus        52 ~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~---------  122 (164)
                      ..++|+++|.+..     +++++.+++++.+|++.|.+++++++||+  |++|+++|+||.+|++......         
T Consensus         3 ~~~~v~~im~~~~-----~~~~v~~~~~~~~a~~~~~~~~~~~~~Vv--d~~~~~~G~vt~~dl~~~~~~~~~~~~~~~~   75 (152)
T 4gqw_A            3 GVYTVGEFMTKKE-----DLHVVKPTTTVDEALELLVENRITGFPVI--DEDWKLVGLVSDYDLLALDSGDSTWKTFNAV   75 (152)
T ss_dssp             CCSBGGGTSEEST-----TCCCBCTTSBHHHHHHHHHHTTCSEEEEE--CTTCBEEEEEEHHHHTTCC----CCHHHHHH
T ss_pred             ceEEhhhccCCCC-----CCeEECCCCcHHHHHHHHHHcCCceEEEE--eCCCeEEEEEEHHHHHHhhcccCcccchHHH
Confidence            4578999998742     28999999999999999999999999999  7789999999999996421100         


Q ss_pred             ---CCCCcccccccccccCCCeEEEcCCCCHHHHHHHHHhCCCC
Q 031190          123 ---GRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTGHMLL  163 (164)
Q Consensus       123 ---~~~~~~~~v~~vm~~~~~~~~v~~~~~l~e~~~~m~~~~~~  163 (164)
                         .......++.++|.+  +++++++++++.+++++|.+++++
T Consensus        76 ~~~~~~~~~~~v~~~m~~--~~~~v~~~~~l~~a~~~~~~~~~~  117 (152)
T 4gqw_A           76 QKLLSKTNGKLVGDLMTP--APLVVEEKTNLEDAAKILLETKYR  117 (152)
T ss_dssp             HTC-----CCBHHHHSEE--SCCCEESSSBHHHHHHHHHHSSCC
T ss_pred             HHHHHHhccccHHHhcCC--CceEECCCCcHHHHHHHHHHCCCC
Confidence               011235789999999  588999999999999999988763

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A

Probab=99.47  E-value=1.5e-13  Score=94.14  Aligned_cols=102  Identities=19%  Similarity=0.229  Sum_probs=81.2

Q ss_pred             ccccHHH---HhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCcc
Q 031190           52 ESTTISD---ILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKS  128 (164)
Q Consensus        52 ~~~~v~d---im~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~  128 (164)
                      .+.++++   +|..       ++.++.+++++.+|++.|.+++++++||+  |++|+++|+|+.+|+++.+.........
T Consensus         6 ~~~~v~~~~~~~~~-------~~~~v~~~~~~~~a~~~~~~~~~~~~~Vv--d~~~~~~Givt~~dl~~~~~~~~~~~~~   76 (144)
T 2nyc_A            6 LKIPIGDLNIITQD-------NMKSCQMTTPVIDVIQMLTQGRVSSVPII--DENGYLINVYEAYDVLGLIKGGIYNDLS   76 (144)
T ss_dssp             GGSBGGGSSCCBCS-------SCCCBCTTSBHHHHHHHHHHHTCSEEEEE--CTTCBEEEEEEHHHHHHHHHTC----CC
T ss_pred             hhcchhhcCCCCCC-------CceEECCCCcHHHHHHHHHHcCcceeeEE--cCCCcEEEEEcHHHHHHHhcccccccCC
Confidence            4456777   6765       59999999999999999999999999999  7789999999999997765422111236


Q ss_pred             cccccccccCC----CeEEEcCCCCHHHHHHHHHhCCC
Q 031190          129 TKVGDIMTEEN----KLITVSPDTKVLRAMQLMTGHML  162 (164)
Q Consensus       129 ~~v~~vm~~~~----~~~~v~~~~~l~e~~~~m~~~~~  162 (164)
                      .++.++|.+.+    ++.++++++++.++++.|.++++
T Consensus        77 ~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~  114 (144)
T 2nyc_A           77 LSVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARV  114 (144)
T ss_dssp             SBHHHHHHHCC------CEECTTSBHHHHHHHHHHHTC
T ss_pred             ccHHHHHhcCccccCCCeEECCCCcHHHHHHHHHHCCC
Confidence            78999997521    37899999999999999988765

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*

Probab=99.47  E-value=1e-13  Score=114.60  Aligned_cols=99  Identities=17%  Similarity=0.215  Sum_probs=87.8

Q ss_pred             ccccHHHHhhhcCCCCCCCceEecCC-CcHHHHHHHHHHcCCCeEEEEecC-CCCcEEEEEehHHHHHHHHHcCCCCccc
Q 031190           52 ESTTISDILKAKGKGADGSWLWCTTD-DTVYDAVKSMTQHNVGALVVVKPG-EQKSVAGIITERDYLRKIIVQGRSSKST  129 (164)
Q Consensus        52 ~~~~v~dim~~~~~~~~~~~~~v~~~-~tl~~a~~~~~~~~~~~ipVv~~d-~~~~~vGivt~~dil~~~~~~~~~~~~~  129 (164)
                      ...+|+++|.+       +++++.++ +++.+|+++|.+++++++||+  | ++++++|+||.+|+++.+.... .....
T Consensus       382 ~~~~V~diM~~-------~~vtv~~~~~tv~ea~~~m~~~~~~~lpVv--d~~~g~lvGiVt~~Dll~~l~~~~-~~~~~  451 (527)
T 3pc3_A          382 WSLAIAELELP-------APPVILKSDATVGEAIALMKKHRVDQLPVV--DQDDGSVLGVVGQETLITQIVSMN-RQQSD  451 (527)
T ss_dssp             TTSBGGGGCCC-------CCSCCEETTCBHHHHHHHHHHHTCSEEEEE--CTTTCCEEEEEEHHHHHHHHHHHC-CCTTS
T ss_pred             cCCcHHHhCcC-------CCeEEcCCCCcHHHHHHHHHHcCCCeEEEE--ECCCCEEEEEEEHHHHHHHHHhcc-CcCCC
Confidence            46899999987       59999999 999999999999999999999  7 6899999999999988776543 23567


Q ss_pred             ccccccccCCCeEEEcCCCCHHHHHHHHHhCCC
Q 031190          130 KVGDIMTEENKLITVSPDTKVLRAMQLMTGHML  162 (164)
Q Consensus       130 ~v~~vm~~~~~~~~v~~~~~l~e~~~~m~~~~~  162 (164)
                      +|.++|++  ++++|++++++.+++++|.++++
T Consensus       452 ~V~~im~~--~~~~v~~~~~l~~a~~~m~~~~~  482 (527)
T 3pc3_A          452 PAIKALNK--RVIRLNESEILGKLARVLEVDPS  482 (527)
T ss_dssp             BGGGGEET--TCCEEETTSBHHHHHHHHTTCSE
T ss_pred             cHHHHhcC--CCeEECCCCcHHHHHHHHhhCCE
Confidence            99999998  59999999999999999988765

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.46  E-value=1.8e-13  Score=95.59  Aligned_cols=101  Identities=16%  Similarity=0.236  Sum_probs=85.7

Q ss_pred             cCcccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCe-EEEEecCCCCcEEEEEehHHHHHHHHHc-----
Q 031190           49 HGFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGA-LVVVKPGEQKSVAGIITERDYLRKIIVQ-----  122 (164)
Q Consensus        49 ~~~~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~-ipVv~~d~~~~~vGivt~~dil~~~~~~-----  122 (164)
                      ..+...+|+++|.+       ++.++.+++++.+|++.|.++++++ +||+  |++ +++|+||.+|+++.+...     
T Consensus        11 ~~~~~~~v~~im~~-------~~~~v~~~~tl~ea~~~m~~~~~~~~~~Vv--d~~-~~vGivt~~dl~~~~~~~~~~~~   80 (157)
T 1o50_A           11 HHMKVKDVCKLISL-------KPTVVEEDTPIEEIVDRILEDPVTRTVYVA--RDN-KLVGMIPVMHLLKVSGFHFFGFI   80 (157)
T ss_dssp             TTCBHHHHTTSSCC-------CCEEECTTCBHHHHHHHHHHSTTCCEEEEE--ETT-EEEEEEEHHHHHHHHHHHHHCCC
T ss_pred             hhhccccHhhcccC-------CCceECCCCCHHHHHHHHHhCCCCccEEEE--ECC-EEEEEEEHHHHHHHHhhhHHhhh
Confidence            34677899999987       5999999999999999999999999 9999  666 999999999998765321     


Q ss_pred             ---------CCCCcccccccccccCCCeEEEcCCCCHHHHHHHHHhCCC
Q 031190          123 ---------GRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTGHML  162 (164)
Q Consensus       123 ---------~~~~~~~~v~~vm~~~~~~~~v~~~~~l~e~~~~m~~~~~  162 (164)
                               .......++.++|.+   ++++++++++.+++++|.++++
T Consensus        81 ~~~~~~~~~~~~~~~~~v~~im~~---~~~v~~~~~l~~a~~~m~~~~~  126 (157)
T 1o50_A           81 PKEELIRSSMKRLIAKNASEIMLD---PVYVHMDTPLEEALKLMIDNNI  126 (157)
T ss_dssp             C-------CCCCCSSCBHHHHCBC---CCCBCTTSBHHHHHHHHHHHTC
T ss_pred             ccHHHHHHHHHHHcCCcHHHHcCC---CeEECCCCCHHHHHHHHHHCCC
Confidence                     012346789999987   7899999999999999988775

>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A

Probab=99.42  E-value=2.8e-13  Score=103.40  Aligned_cols=96  Identities=20%  Similarity=0.330  Sum_probs=85.0

Q ss_pred             CcccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHc-----CCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCC
Q 031190           50 GFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQH-----NVGALVVVKPGEQKSVAGIITERDYLRKIIVQGR  124 (164)
Q Consensus        50 ~~~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~-----~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~  124 (164)
                      .+...+++++|++       +++++.+++++.+|++.|.++     +++++||+  |++|+++|+||.+|++..      
T Consensus       131 ~~~~~~v~~iM~~-------~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~~Vv--d~~~~lvGivt~~dll~~------  195 (278)
T 2yvy_A          131 RYEEDEAGGLMTP-------EYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVV--DEKGRLKGVLSLRDLIVA------  195 (278)
T ss_dssp             HSCTTBGGGTCBS-------CCCEECTTSBHHHHHHHHHHHTTTCSCSSEEEEE--CTTCBEEEEEEHHHHHHS------
T ss_pred             CCCcchHHhhcCC-------CceEECCCCcHHHHHHHHHHccCCccceeEEEEE--CCCCCEEEEEEHHHHhcC------
Confidence            3577899999988       599999999999999999987     78999999  778999999999999752      


Q ss_pred             CCcccccccccccCCCeEEEcCCCCHHHHHHHHHhCCCC
Q 031190          125 SSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTGHMLL  163 (164)
Q Consensus       125 ~~~~~~v~~vm~~~~~~~~v~~~~~l~e~~~~m~~~~~~  163 (164)
                       ....++.++|.+  ++++|++++++.+++++|.+++++
T Consensus       196 -~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~  231 (278)
T 2yvy_A          196 -DPRTRVAEIMNP--KVVYVRTDTDQEEVARLMADYDFT  231 (278)
T ss_dssp             -CTTCBSTTTSBS--SCCCEETTSBHHHHHHHHHHHTCS
T ss_pred             -CCCCcHHHHhCC--CCeEEeCCCCHHHHHHHHHhcCCC
Confidence             246789999988  599999999999999999988763

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*

Probab=99.41  E-value=7.3e-13  Score=99.03  Aligned_cols=59  Identities=10%  Similarity=0.142  Sum_probs=54.3

Q ss_pred             cccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHH
Q 031190           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII  120 (164)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~  120 (164)
                      ..+|+++|.+       ++.++.+++++.+|+++|.+++++++||+  |++|+++|+||..|+++.+.
T Consensus         6 ~~~v~~im~~-------~~~~v~~~~~~~~a~~~m~~~~~~~lpVv--d~~~~l~Giit~~di~~~~~   64 (245)
T 3l2b_A            6 KLKVEDLEMD-------KIAPLAPEVSLKMAWNIMRDKNLKSIPVA--DGNNHLLGMLSTSNITATYM   64 (245)
T ss_dssp             CCBGGGSCCB-------CCCCBCTTCBHHHHHHHHHHTTCSEEEEE--CTTCBEEEEEEHHHHHHHHH
T ss_pred             cCcHHHhcCC-------CCcEECCCCcHHHHHHHHHHcCCCEEEEE--cCCCEEEEEEEHHHHHHHHH
Confidence            4689999987       69999999999999999999999999999  77899999999999987764

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.39  E-value=9.1e-13  Score=96.86  Aligned_cols=94  Identities=14%  Similarity=0.190  Sum_probs=82.2

Q ss_pred             ccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCccccc
Q 031190           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKV  131 (164)
Q Consensus        52 ~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~v  131 (164)
                      ...+++++|..       ++.++.+++++.+|+++|.+++++++||+  |++++++|+||.+|+++.       ..+.++
T Consensus        11 ~~~~~~~~~~~-------~~~~v~~~~tv~ea~~~m~~~~~~~~pVv--d~~~~l~Givt~~dl~~~-------~~~~~v   74 (213)
T 1vr9_A           11 HHMKVKKWVTQ-------DFPMVEESATVRECLHRMRQYQTNECIVK--DREGHFRGVVNKEDLLDL-------DLDSSV   74 (213)
T ss_dssp             --CBGGGGCBS-------CSCEEETTCBHHHHHHHHHHTTSSEEEEE--CTTSBEEEEEEGGGGTTS-------CTTSBS
T ss_pred             cccCHHHhhcC-------CCeEECCCCcHHHHHHHHHHCCCCEEEEE--cCCCEEEEEEEHHHHHhh-------cCCCcH
Confidence            34688899988       69999999999999999999999999999  778999999999999542       135689


Q ss_pred             ccccccCCCeEEEcCCCCHHHHHHHHHhCCCC
Q 031190          132 GDIMTEENKLITVSPDTKVLRAMQLMTGHMLL  163 (164)
Q Consensus       132 ~~vm~~~~~~~~v~~~~~l~e~~~~m~~~~~~  163 (164)
                      .++|++  +++++++++++.+++++|.++++.
T Consensus        75 ~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~  104 (213)
T 1vr9_A           75 FNKVSL--PDFFVHEEDNITHALLLFLEHQEP  104 (213)
T ss_dssp             GGGCBC--TTCCEETTSBHHHHHHHHHHCCCS
T ss_pred             HHHccC--CCEEECCCCcHHHHHHHHHHhCCC
Confidence            999998  589999999999999999998763

>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*

Probab=99.38  E-value=7.3e-14  Score=113.92  Aligned_cols=120  Identities=23%  Similarity=0.307  Sum_probs=22.8

Q ss_pred             cccccccccccchhhh----hcC-----cccccHHHHh---hhcCCCCCC---CceEecCCCcHHHHHHHHHHcCCCeEE
Q 031190           32 PVVSSRFESVSSARME----EHG-----FESTTISDIL---KAKGKGADG---SWLWCTTDDTVYDAVKSMTQHNVGALV   96 (164)
Q Consensus        32 ~~~~~~~~~~~~~~~~----~~~-----~~~~~v~dim---~~~~~~~~~---~~~~v~~~~tl~~a~~~~~~~~~~~ip   96 (164)
                      |.+++.||++++..|+    +.|     .+++++.+..   ...+++++|   +++++.|++|+.+|+++|.+++++.+|
T Consensus        94 PlvSA~MDTVTe~~MAIamAr~GGiGvIH~n~sie~Qa~~V~~VKr~e~g~i~dPvtl~P~~Tv~da~~l~~~~~isgvp  173 (556)
T 4af0_A           94 PFLSSPMDTVTEDRMAIALALHGGLGIIHHNCSAEEQAAMVRRVKKYENGFITDPLCLGPDATVGDVLEIKAKFGFCGVP  173 (556)
T ss_dssp             CEEECCCTTTCSHHHHHHHHHTTCEEEECCSSCHHHHHHHHHHHHHCCC-------------------------------
T ss_pred             CEEecCcccccCHHHHHHHHHCCCeEEEcCCCCHHHHHHHHHHHHhcccCccCCCeEcCCCCCHHHHHHHHHHhCCCccc
Confidence            8899999999998887    332     2567665421   111223333   789999999999999999999999999


Q ss_pred             EEecCC---CCcEEEEEehHHHHHHHHHcCCCCcccccccccccCCCeEEEcCCCCHHHHHHHHHhCCC
Q 031190           97 VVKPGE---QKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTGHML  162 (164)
Q Consensus        97 Vv~~d~---~~~~vGivt~~dil~~~~~~~~~~~~~~v~~vm~~~~~~~~v~~~~~l~e~~~~m~~~~~  162 (164)
                      |+  ++   +++++||||.+|+ ++      ...+.+|+++|++  ++++++++.++++|.++|.++++
T Consensus       174 Vv--d~g~~~~kLvGIvT~RD~-rf------~d~~~~V~evMT~--~lvt~~~~~~leeA~~iL~~~ki  231 (556)
T 4af0_A          174 IT--ETGEPDSKLLGIVTGRDV-QF------QDAETPIKSVMTT--EVVTGSSPITLEKANSLLRETKK  231 (556)
T ss_dssp             ---------------------------------------------------------------------
T ss_pred             cc--cccCcCCEEEEEEecccc-cc------cccceEhhhhccc--ceEEecCCCCHHHHHHHHHHccc
Confidence            99  43   5799999999998 53      1346799999999  59999999999999999998875

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*

Probab=99.38  E-value=2.2e-12  Score=97.43  Aligned_cols=97  Identities=18%  Similarity=0.393  Sum_probs=84.8

Q ss_pred             cccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCcccccc
Q 031190           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVG  132 (164)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~v~  132 (164)
                      +.+++++|.+       ++.++.+++++.+|++.|.+++++++||+  |++|+++|++|.+|+++.+...  .....++.
T Consensus        83 ~~~v~~im~~-------~~~~v~~~~~~~~a~~~~~~~~~~~~~Vv--d~~~~~~Givt~~dl~~~~~~~--~~~~~~v~  151 (280)
T 3kh5_A           83 NEPVREIMEE-------NVITLKENADIDEAIETFLTKNVGGAPIV--NDENQLISLITERDVIRALLDK--IDENEVID  151 (280)
T ss_dssp             TSBGGGTSBC-------SCCCEETTCBHHHHHHHHHHTTCSEEEEE--CTTCBEEEEEEHHHHHHHHGGG--SCTTCBSG
T ss_pred             hhhHHHhcCC-------CCEEECCCCCHHHHHHHHHhCCCCEEEEE--cCCCEEEEEEEHHHHHHHHhhc--CCCCCCHH
Confidence            4689999997       59999999999999999999999999999  7889999999999998765432  22345899


Q ss_pred             cccccCCCeEEEcCCCCHHHHHHHHHhCCC
Q 031190          133 DIMTEENKLITVSPDTKVLRAMQLMTGHML  162 (164)
Q Consensus       133 ~vm~~~~~~~~v~~~~~l~e~~~~m~~~~~  162 (164)
                      ++|++  ++.++++++++.++++.|.++++
T Consensus       152 ~~m~~--~~~~v~~~~~l~~~~~~~~~~~~  179 (280)
T 3kh5_A          152 DYITR--DVIVATPGERLKDVARTMVRNGF  179 (280)
T ss_dssp             GGCBC--SCCCBCTTCBHHHHHHHHHHHTC
T ss_pred             HHhCC--CCeEECCCCcHHHHHHHHHHcCC
Confidence            99988  58999999999999999988765

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C

Probab=99.36  E-value=1.4e-12  Score=100.78  Aligned_cols=103  Identities=17%  Similarity=0.216  Sum_probs=86.1

Q ss_pred             ccccHHHH---hhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCcc
Q 031190           52 ESTTISDI---LKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKS  128 (164)
Q Consensus        52 ~~~~v~di---m~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~  128 (164)
                      ...+++++   |.+       ++.++.+++++.+|++.|.+++++++||+  |++|+++|+||.+|+++.+.........
T Consensus       185 ~~~~v~~~~~~m~~-------~~~~v~~~~~~~~~~~~m~~~~~~~~pVv--d~~~~~~Giit~~dl~~~~~~~~~~~~~  255 (323)
T 3t4n_C          185 LKIPIGDLNIITQD-------NMKSCQMTTPVIDVIQMLTQGRVSSVPII--DENGYLINVYEAYDVLGLIKGGIYNDLS  255 (323)
T ss_dssp             CCSBGGGTTCSBCT-------TCCCBCTTSBHHHHHHHHHHHTCSEEEEE--CTTCBEEEEEETTHHHHHHHTTHHHHTT
T ss_pred             hhCcHHHcCCCCCC-------CcEEECCCCcHHHHHHHHHHcCCCEEEEE--CCCCeEEEEEeHHHHHHHHhhchhhhcc
Confidence            34588888   765       59999999999999999999999999999  7889999999999998766422111235


Q ss_pred             cccccccccCC----CeEEEcCCCCHHHHHHHHHhCCCC
Q 031190          129 TKVGDIMTEEN----KLITVSPDTKVLRAMQLMTGHMLL  163 (164)
Q Consensus       129 ~~v~~vm~~~~----~~~~v~~~~~l~e~~~~m~~~~~~  163 (164)
                      .++.++|++.+    +++++++++++.++++.|.+++++
T Consensus       256 ~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~  294 (323)
T 3t4n_C          256 LSVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVH  294 (323)
T ss_dssp             SBHHHHGGGSCTTCCCCEEECTTCBHHHHHHHHHHSCCC
T ss_pred             CCHHHHHhhccccCCCCEEECCCCCHHHHHHHHHHhCCC
Confidence            68999999732    389999999999999999998864

>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A

Probab=99.35  E-value=8.9e-13  Score=107.73  Aligned_cols=96  Identities=20%  Similarity=0.335  Sum_probs=85.0

Q ss_pred             CcccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHc-----CCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCC
Q 031190           50 GFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQH-----NVGALVVVKPGEQKSVAGIITERDYLRKIIVQGR  124 (164)
Q Consensus        50 ~~~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~-----~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~  124 (164)
                      .+.+.+++++|++       +++++.+++++.++++.|+++     +++++||+  |++++++|+||.+|++.       
T Consensus       151 ~~~~~~v~~iM~~-------~~v~v~~~~tv~ea~~~~~~~~~~~~~~~~ipVv--d~~~~lvGiVt~~Dll~-------  214 (473)
T 2zy9_A          151 RYEEDEAGGLMTP-------EYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVV--DEKGRLKGVLSLRDLIV-------  214 (473)
T ss_dssp             TSCTTBSTTTCBS-------CEEEECTTCBHHHHHHHHHHHGGGCSEEEEEEEE--CTTSBEEEEEEHHHHHH-------
T ss_pred             cCCCCCHHHhCCC-------CceEeCCCCcHHHHHHHHHhccCCcCceeEEEEE--CCCCcEEEEEEHHHHhc-------
Confidence            4678899999998       699999999999999999986     57999999  77899999999999975       


Q ss_pred             CCcccccccccccCCCeEEEcCCCCHHHHHHHHHhCCCC
Q 031190          125 SSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTGHMLL  163 (164)
Q Consensus       125 ~~~~~~v~~vm~~~~~~~~v~~~~~l~e~~~~m~~~~~~  163 (164)
                      ...+.+++++|++  +++++++++++.++++.|.+++++
T Consensus       215 ~~~~~~v~dim~~--~~~~v~~~~~l~ea~~~m~~~~~~  251 (473)
T 2zy9_A          215 ADPRTRVAEIMNP--KVVYVRTDTDQEEVARLMADYDFT  251 (473)
T ss_dssp             SCTTSBGGGTSBS--SCCCEESSSBHHHHHHHHHHHTCS
T ss_pred             CCCCCcHHHHhCC--CCeEEeCCCcHHHHHHHHHhcCCc
Confidence            1246799999988  599999999999999999988763

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=99.31  E-value=2e-12  Score=106.16  Aligned_cols=117  Identities=24%  Similarity=0.327  Sum_probs=86.7

Q ss_pred             ccccccccccccchhhh----hc-Cc----ccccHH-------------HHhhhcCCCCCCCceEecCCCcHHHHHHHHH
Q 031190           31 RPVVSSRFESVSSARME----EH-GF----ESTTIS-------------DILKAKGKGADGSWLWCTTDDTVYDAVKSMT   88 (164)
Q Consensus        31 ~~~~~~~~~~~~~~~~~----~~-~~----~~~~v~-------------dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~   88 (164)
                      .|.+++.|+++++..|+    +. ++    .+++..             ++|..       +++++++++++.+++++|.
T Consensus        44 iPivsa~MdtVTe~~ma~a~a~~GGiGvI~~n~s~e~qa~~V~~Vk~~~~~m~~-------d~v~v~~~~tv~ea~~~m~  116 (496)
T 4fxs_A           44 IPMVSASMDTVTEARLAIALAQEGGIGFIHKNMSIEQQAAQVHQVKIFEAGVVT-------HPVTVRPEQTIADVMELTH  116 (496)
T ss_dssp             SSEEECCCTTTCSHHHHHHHHHHTCEEEECSSSCHHHHHHHHHHHHHCCC--CB-------CCCCBCSSSBHHHHHHHHT
T ss_pred             CCceecCcchhhHHHHHHHHHHcCCcceecCCCCHHHHHHHHHhcccccccccc-------CceEECCCCCHHHHHHHHH
Confidence            48889999999998886    11 11    233332             35654       6999999999999999999


Q ss_pred             HcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCcccccccccc-cCCCeEEEcCCCCHHHHHHHHHhCCCC
Q 031190           89 QHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMT-EENKLITVSPDTKVLRAMQLMTGHMLL  163 (164)
Q Consensus        89 ~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~v~~vm~-~~~~~~~v~~~~~l~e~~~~m~~~~~~  163 (164)
                      +++++++||+  |++++++|+||.+|++.    .  ...+.++.++|+ ++ +++++++++++.+++++|.+++++
T Consensus       117 ~~~~s~~PVv--d~~~~lvGiVt~rDL~~----~--~~~~~~v~diM~p~~-~~vtv~~~~~l~ea~~~m~~~~i~  183 (496)
T 4fxs_A          117 YHGFAGFPVV--TENNELVGIITGRDVRF----V--TDLTKSVAAVMTPKE-RLATVKEGATGAEVQEKMHKARVE  183 (496)
T ss_dssp             SSCCCEEEEE--CSSSBEEEEEEHHHHTT----C--CCTTSBGGGTSEEGG-GCCEEECC----CGGGTCC---CC
T ss_pred             HcCCcEEEEE--ccCCEEEEEEEHHHHhh----c--ccCCCcHHHHhcCCC-CCEEECCCCCHHHHHHHHHHcCCC
Confidence            9999999999  77899999999999942    1  235678999999 42 389999999999999999888763

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}

Probab=99.31  E-value=1.3e-12  Score=110.16  Aligned_cols=103  Identities=12%  Similarity=0.017  Sum_probs=82.4

Q ss_pred             ccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHH-HcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCC-----
Q 031190           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMT-QHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRS-----  125 (164)
Q Consensus        52 ~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~-~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~-----  125 (164)
                      .+++|+|+|++++     ++.++++++++.++.+.|. +++++.+||+  |++++++|+||.+|+++.+......     
T Consensus       451 ~~~~V~diM~p~~-----~v~~v~~~~t~~e~~~~~~~~~~~~~~PVv--d~~~~lvGiVt~~DL~~~l~~~~~~~~~~~  523 (632)
T 3org_A          451 PEMTAREIMHPIE-----GEPHLFPDSEPQHIKGILEKFPNRLVFPVI--DANGYLLGAISRKEIVDRLQHVLEDVPEPI  523 (632)
T ss_dssp             TTSBHHHHCBCTT-----TSCCBCSSSCHHHHHHHHHHSTTCCEECBB--CTTCBBCCEESHHHHTTTTTTC--------
T ss_pred             ccCcHHHHhhcCC-----CceEecCCCcHHHHHHHHHhcCCcceEEEE--ecCCeEEEEEEHHHHHHHHHHHhhhccccc
Confidence            5689999999432     5999999999999999999 7999999999  7789999999999997643211000     


Q ss_pred             -----------------------------------------CcccccccccccCCCeEEEcCCCCHHHHHHHHHhCCCC
Q 031190          126 -----------------------------------------SKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTGHMLL  163 (164)
Q Consensus       126 -----------------------------------------~~~~~v~~vm~~~~~~~~v~~~~~l~e~~~~m~~~~~~  163 (164)
                                                               ....++.++|++  ++++|++++++.+++++|.+++++
T Consensus       524 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~v~~iMt~--~pitV~~~~~l~ea~~~M~~~~i~  600 (632)
T 3org_A          524 AGHRTLVLLDAADLSENIEGLVDETPSGEHSSKGKRTATVLEPTSSLVVPCDV--SPIVVTSYSLVRQLHFLFVMLMPS  600 (632)
T ss_dssp             -----------------------------------------------CCSCCC--CCCEEETTCBHHHHHHHHHHTCCS
T ss_pred             ccccceeccCHHHHHhhcccCCCCCcccchhhhcccceEeeccccccchhhcC--CCceecCCCcHHHHHHHHHhcCCC
Confidence                                                     001137889999  589999999999999999999874

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1

Probab=99.30  E-value=2.8e-12  Score=97.97  Aligned_cols=97  Identities=24%  Similarity=0.297  Sum_probs=84.6

Q ss_pred             ccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCccccc
Q 031190           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKV  131 (164)
Q Consensus        52 ~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~v  131 (164)
                      .+.+++++|.+       ++.++.+++++.+|++.|.+++++++||+  |++|+++|+||.+|+++.+..   .....++
T Consensus        91 ~~~~v~~im~~-------~~~~v~~~~~~~~a~~~m~~~~~~~lpVv--d~~~~lvGivt~~dl~~~~~~---~~~~~~v  158 (296)
T 3ddj_A           91 STTPIIDYMTP-------NPVTVYNTSDEFTAINIMVTRNFGSLPVV--DINDKPVGIVTEREFLLLYKD---LDEIFPV  158 (296)
T ss_dssp             HTSBGGGTSEE-------SCCCEETTSCHHHHHHHHHHHTCSEEEEE--CTTSCEEEEEEHHHHGGGGGG---SCCCCBH
T ss_pred             hcccHHHhccC-------CCEEEcCCCCHHHHHHHHHHcCCCEEEEE--cCCCcEEEEEeHHHHHHhhhc---ccccccH
Confidence            35789999987       59999999999999999999999999999  788999999999999764422   1235689


Q ss_pred             ccccccCCCeEEEcCCCCHHHHHHHHHhCCC
Q 031190          132 GDIMTEENKLITVSPDTKVLRAMQLMTGHML  162 (164)
Q Consensus       132 ~~vm~~~~~~~~v~~~~~l~e~~~~m~~~~~  162 (164)
                      .++|.+  ++.++++++++.++++.|.++++
T Consensus       159 ~~~m~~--~~~~v~~~~~l~~~~~~m~~~~~  187 (296)
T 3ddj_A          159 KVFMST--KVQTIYKEVRLDQAVKLMLRRGF  187 (296)
T ss_dssp             HHHSBC--SCCCEETTSBHHHHHHHHHHHTC
T ss_pred             HHhhcC--CCeEECCCCCHHHHHHHHHHcCC
Confidence            999988  59999999999999999988765

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*

Probab=99.30  E-value=4.6e-12  Score=95.65  Aligned_cols=89  Identities=21%  Similarity=0.268  Sum_probs=75.1

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEEEEecCC-CCcEEEEEehHHHHHHHHHc-------CCC------Cccccccccc
Q 031190           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGE-QKSVAGIITERDYLRKIIVQ-------GRS------SKSTKVGDIM  135 (164)
Q Consensus        70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~-~~~~vGivt~~dil~~~~~~-------~~~------~~~~~v~~vm  135 (164)
                      +++++.+++|+.+|+++|.+++++++||+  |+ +|+++|++|.+|+++.+...       ...      ..+.+++++|
T Consensus        13 ~~~~v~~~~sl~~a~~~m~~~~~~~lpV~--d~~~~~~~Givt~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im   90 (280)
T 3kh5_A           13 KIVTVYPTTTIRKALMTMNENKYRRLPVV--NAGNNKVVGIITSMDIVDFMGGGSKYNLIREKHERNFLAAINEPVREIM   90 (280)
T ss_dssp             CCCCBCTTSBHHHHHHHHHHHCCCEEEEE--CTTTCBEEEEEEHHHHHHHTTTSGGGHHHHTTSTTCHHHHTTSBGGGTS
T ss_pred             CcEEECCCCcHHHHHHHHHhCCCcEeeEE--ECCCCeEEEEEEHHHHHHHhcccchhhhhhhccccchhHHhhhhHHHhc
Confidence            59999999999999999999999999999  65 79999999999998754210       000      1145899999


Q ss_pred             ccCCCeEEEcCCCCHHHHHHHHHhCCC
Q 031190          136 TEENKLITVSPDTKVLRAMQLMTGHML  162 (164)
Q Consensus       136 ~~~~~~~~v~~~~~l~e~~~~m~~~~~  162 (164)
                      ++  ++.++++++++.++++.|.++++
T Consensus        91 ~~--~~~~v~~~~~~~~a~~~~~~~~~  115 (280)
T 3kh5_A           91 EE--NVITLKENADIDEAIETFLTKNV  115 (280)
T ss_dssp             BC--SCCCEETTCBHHHHHHHHHHTTC
T ss_pred             CC--CCEEECCCCCHHHHHHHHHhCCC
Confidence            98  59999999999999999998876

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1

Probab=99.29  E-value=6.1e-12  Score=96.10  Aligned_cols=100  Identities=20%  Similarity=0.200  Sum_probs=85.6

Q ss_pred             ccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcC-----CCC
Q 031190           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQG-----RSS  126 (164)
Q Consensus        52 ~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~-----~~~  126 (164)
                      ...+++++|.+       ++.++.+++++.++++.|.+++++++||+  |++|+++|+||.+|+++.+....     ...
T Consensus       154 ~~~~v~~~m~~-------~~~~v~~~~~l~~~~~~m~~~~~~~~~Vv--d~~~~~~Givt~~dl~~~~~~~~~~~~~~~~  224 (296)
T 3ddj_A          154 EIFPVKVFMST-------KVQTIYKEVRLDQAVKLMLRRGFRRLPVI--DDDNKVVGIVTVVNAIKQLAKAVDKLDPDYF  224 (296)
T ss_dssp             CCCBHHHHSBC-------SCCCEETTSBHHHHHHHHHHHTCSEEEEE--CTTSCEEEEEEHHHHHHHHHHHHHHTCTHHH
T ss_pred             ccccHHHhhcC-------CCeEECCCCCHHHHHHHHHHcCCCEEEEE--cCCCEEEEEEEHHHHHHHHHHHHhhcChhhh
Confidence            45689999986       59999999999999999999999999999  78899999999999987664210     011


Q ss_pred             cccccccccccCCCeEEEcCCCCHHHHHHHHHhCCC
Q 031190          127 KSTKVGDIMTEENKLITVSPDTKVLRAMQLMTGHML  162 (164)
Q Consensus       127 ~~~~v~~vm~~~~~~~~v~~~~~l~e~~~~m~~~~~  162 (164)
                      ...++.++|++  +++++++++++.++++.|.++++
T Consensus       225 ~~~~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~  258 (296)
T 3ddj_A          225 YGKVVKDVMVT--NLVTIDELASVNRAAAEMIVKRI  258 (296)
T ss_dssp             HTCBHHHHSBC--CCCBCCTTSBHHHHHHHHHHHTC
T ss_pred             cCcCHHHHhCC--CCeEECCCCcHHHHHHHHHHcCC
Confidence            35689999998  59999999999999999988775

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=99.28  E-value=1.4e-11  Score=101.47  Aligned_cols=122  Identities=26%  Similarity=0.444  Sum_probs=96.0

Q ss_pred             ccccccccccccchhhh----hc-Cc----ccc-------cHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCe
Q 031190           31 RPVVSSRFESVSSARME----EH-GF----EST-------TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGA   94 (164)
Q Consensus        31 ~~~~~~~~~~~~~~~~~----~~-~~----~~~-------~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~   94 (164)
                      .|.+++.|+++++..|+    +. ++    .++       .+.++|.... .-..+++++.+++|+.+++++|.++++++
T Consensus        68 iPivsa~MdtvTe~~lAia~a~~GgiGvIh~~~~~~~q~~~V~~V~~~~~-~m~~d~v~l~~~~tv~ea~~~m~~~~~s~  146 (511)
T 3usb_A           68 IPLISAGMDTVTEADMAIAMARQGGLGIIHKNMSIEQQAEQVDKVKRSES-GVISDPFFLTPEHQVYDAEHLMGKYRISG  146 (511)
T ss_dssp             SSEEECSCTTTCSHHHHHHHHHHTCEEEECSSSCHHHHHHHHHHHHTSSS-CSSSSCCCBCTTSBHHHHHHHHHHHCCSE
T ss_pred             CCccccCchhhcHHHHHHHHHhcCCceeecccCCHHHHHHHHHHhhcccc-ccccCCEEECCCCCHHHHHHHHHHcCCcE
Confidence            37888999999998886    11 11    122       3566665421 11126889999999999999999999999


Q ss_pred             EEEEecCC--CCcEEEEEehHHHHHHHHHcCCCCcccccccccccCCCeEEEcCCCCHHHHHHHHHhCCC
Q 031190           95 LVVVKPGE--QKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTGHML  162 (164)
Q Consensus        95 ipVv~~d~--~~~~vGivt~~dil~~~~~~~~~~~~~~v~~vm~~~~~~~~v~~~~~l~e~~~~m~~~~~  162 (164)
                      +||+  |+  +++++|+||.+|++.    .  ...+.++.++|++. +++++++++++.+++++|.++++
T Consensus       147 ~pVv--d~g~~~~lvGiVt~rDl~~----~--~~~~~~V~~vM~~~-~~vtv~~~~~l~eal~~m~~~~i  207 (511)
T 3usb_A          147 VPVV--NNLDERKLVGIITNRDMRF----I--QDYSIKISDVMTKE-QLITAPVGTTLSEAEKILQKYKI  207 (511)
T ss_dssp             EEEE--SCTTTCBEEEEEEHHHHTT----C--CCSSSBHHHHCCCC-CCCCEETTCCHHHHHHHHHHHTC
T ss_pred             EEEE--ecCCCCEEEEEEEehHhhh----h--ccCCCcHHHhcccC-CCEEECCCCCHHHHHHHHHHcCC
Confidence            9999  66  789999999999943    1  23578999999962 48999999999999999998876

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1

Probab=99.28  E-value=2.4e-12  Score=97.42  Aligned_cols=91  Identities=16%  Similarity=0.194  Sum_probs=63.2

Q ss_pred             ccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCccccccc
Q 031190           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGD  133 (164)
Q Consensus        54 ~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~v~~  133 (164)
                      ++|+++|.+       ++.++++++++.+|+++|.+++++++||+  |++|+++|+|+.+|++..+       .+.++++
T Consensus         1 m~v~~im~~-------~~~~v~~~~~~~~a~~~~~~~~~~~~pV~--d~~~~~~Giv~~~dl~~~~-------~~~~v~~   64 (282)
T 2yzq_A            1 MRVKTIMTQ-------NPVTITLPATRNYALELFKKYKVRSFPVV--NKEGKLVGIISVKRILVNP-------DEEQLAM   64 (282)
T ss_dssp             CBHHHHSEE-------SCCCEESSCC------------CCEEEEE--CTTCCEEEEEESSCC-----------------C
T ss_pred             CchHHhccC-------CCeEECCCCcHHHHHHHHHHcCCCeEEEE--cCCCcEEEEEEHHHHHhhh-------ccCCHHH
Confidence            478999987       59999999999999999999999999999  7789999999999997532       3568999


Q ss_pred             ccccCCCeEEEcCCCCHHHHHHHHHhCCC
Q 031190          134 IMTEENKLITVSPDTKVLRAMQLMTGHML  162 (164)
Q Consensus       134 vm~~~~~~~~v~~~~~l~e~~~~m~~~~~  162 (164)
                      +|.+  +++++++++++.++++.|.++++
T Consensus        65 ~m~~--~~~~v~~~~~l~~a~~~m~~~~~   91 (282)
T 2yzq_A           65 LVKR--DVPVVKENDTLKKAAKLMLEYDY   91 (282)
T ss_dssp             CCBS--CCCEEETTSBHHHHHHHHHHHTC
T ss_pred             HcCC--CCcEECCCCcHHHHHHHHHHcCC
Confidence            9998  48899999999999999988765

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1

Probab=99.26  E-value=1.3e-11  Score=93.37  Aligned_cols=100  Identities=18%  Similarity=0.203  Sum_probs=79.9

Q ss_pred             ccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCccccc
Q 031190           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKV  131 (164)
Q Consensus        52 ~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~v  131 (164)
                      .+.+++++|.+       ++.++.+++++.+|++.|.+++.+.+||+  |++|+++|+||.+|+++.....+......++
T Consensus        58 ~~~~v~~~m~~-------~~~~v~~~~~l~~a~~~m~~~~~~~~~Vv--d~~~~~~Giit~~di~~~~~~~~~~~~~~~v  128 (282)
T 2yzq_A           58 DEEQLAMLVKR-------DVPVVKENDTLKKAAKLMLEYDYRRVVVV--DSKGKPVGILTVGDIIRRYFAKSEKYKGVEI  128 (282)
T ss_dssp             ------CCCBS-------CCCEEETTSBHHHHHHHHHHHTCSEEEEE--CTTSCEEEEEEHHHHHHHTTTTCSGGGGCBS
T ss_pred             ccCCHHHHcCC-------CCcEECCCCcHHHHHHHHHHcCCCEEEEE--cCCCEEEEEEEHHHHHHHHHhccCCcccCcH
Confidence            35688899987       58999999999999999999999999999  7779999999999997723222112235688


Q ss_pred             ccccccCCCeEEEcCCCCHHHHHHHHHhCCC
Q 031190          132 GDIMTEENKLITVSPDTKVLRAMQLMTGHML  162 (164)
Q Consensus       132 ~~vm~~~~~~~~v~~~~~l~e~~~~m~~~~~  162 (164)
                      .++|.+  +++++++++++.++++.|.++++
T Consensus       129 ~~~m~~--~~~~v~~~~~l~~~~~~~~~~~~  157 (282)
T 2yzq_A          129 EPYYQR--YVSIVWEGTPLKAALKALLLSNS  157 (282)
T ss_dssp             TTTSBS--CCCCEETTSBHHHHHHHHHTCSS
T ss_pred             HHHhCC--CCEEECCCCCHHHHHHHHHHcCC
Confidence            999987  58999999999999999998775

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*

Probab=99.25  E-value=1.9e-11  Score=94.84  Aligned_cols=102  Identities=13%  Similarity=0.228  Sum_probs=83.3

Q ss_pred             cccHHHH---hhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCccc
Q 031190           53 STTISDI---LKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKST  129 (164)
Q Consensus        53 ~~~v~di---m~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~  129 (164)
                      ..+++++   |..       ++.++.+++++.+|++.|.+++++++||+  |++|+++|+||.+|+++.+..........
T Consensus       181 ~~~v~~l~~~m~~-------~~~~v~~~~~~~~~~~~m~~~~~~~~~Vv--d~~~~~~Giit~~dl~~~~~~~~~~~~~~  251 (334)
T 2qrd_G          181 RVPLNQMTIGTWS-------NLATASMETKVYDVIKMLAEKNISAVPIV--NSEGTLLNVYESVDVMHLIQDGDYSNLDL  251 (334)
T ss_dssp             CCBGGGSSCSBCS-------SCCCBCTTSBHHHHHHHHHHHTCSEEEEE--CTTCBEEEEEETHHHHHHHTTSCGGGGGS
T ss_pred             hCcHHHhCCcccC-------CceEECCCCcHHHHHHHHHHcCCcEEEEE--cCCCcEEEEEEHHHHHHHhhccccccccC
Confidence            3567774   665       58999999999999999999999999999  77899999999999987654221112357


Q ss_pred             ccccccccC----CCeEEEcCCCCHHHHHHHHHhCCCC
Q 031190          130 KVGDIMTEE----NKLITVSPDTKVLRAMQLMTGHMLL  163 (164)
Q Consensus       130 ~v~~vm~~~----~~~~~v~~~~~l~e~~~~m~~~~~~  163 (164)
                      ++.++|.+.    .+++++++++++.++++.|.+++++
T Consensus       252 ~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~  289 (334)
T 2qrd_G          252 SVGEALLKRPANFDGVHTCRATDRLDGIFDAIKHSRVH  289 (334)
T ss_dssp             BHHHHHTTCCTTCCCCCEECTTCBHHHHHHHHHHSCCC
T ss_pred             cHHHHHhcccccCCCCEEECCCCcHHHHHHHHHHcCCC
Confidence            899999840    0488999999999999999998764

>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1

Probab=99.20  E-value=3.4e-11  Score=90.74  Aligned_cols=61  Identities=13%  Similarity=0.114  Sum_probs=54.2

Q ss_pred             cccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCC--CCcEEEEEehHHHHHHHH
Q 031190           51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGE--QKSVAGIITERDYLRKII  120 (164)
Q Consensus        51 ~~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~--~~~~vGivt~~dil~~~~  120 (164)
                      ...++|+|+|++       +++++.+++++.+|.++|.+++++++|||  |+  +++++|+|+++|+++.+.
T Consensus        10 ~~~~~v~diMt~-------~vvtv~~~~tv~~~~~lm~~~~~~~~PVV--d~~~~~~LvGiIt~~dl~~~l~   72 (250)
T 2d4z_A           10 KYNIQVGDIMVR-------DVTSIASTSTYGDLLHVLRQTKLKFFPFV--DTPDTNTLLGSIDRTEVEGLLQ   72 (250)
T ss_dssp             CSSCBTTSSSBS-------SCCCEETTCBHHHHHHHHHHCCCSEEEEE--SCTTTCBEEEEEEHHHHHHHHH
T ss_pred             cCCCChHHhcCC-------CCeEECCCCCHHHHHHHHHhcCCCEEEEE--ecCCCCeEEEEEEHHHHHHHHH
Confidence            457899999998       69999999999999999999999999999  54  368999999999987543

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*

Probab=99.13  E-value=5.5e-11  Score=92.22  Aligned_cols=105  Identities=17%  Similarity=0.128  Sum_probs=79.6

Q ss_pred             ccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCC-CcEEEEEehHHHHHHHHHc-C--CCCc
Q 031190           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ-KSVAGIITERDYLRKIIVQ-G--RSSK  127 (164)
Q Consensus        52 ~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~-~~~vGivt~~dil~~~~~~-~--~~~~  127 (164)
                      .+.+++++|.++.     +++++++++++.+|++.|.+++++++||+  |++ ++++|+|+.+|++..+... .  ....
T Consensus        20 ~~~~v~dim~~~~-----~vv~v~~~~tv~~a~~~~~~~~~~~~pV~--d~~~~~~vGiv~~~Dl~~~~~~~~~~~~~~~   92 (334)
T 2qrd_G           20 RSRTSYDVLPTSF-----RLIVFDVTLFVKTSLSLLTLNNIVSAPLW--DSEANKFAGLLTMADFVNVIKYYYQSSSFPE   92 (334)
T ss_dssp             HHSBGGGGSCSEE-----EEEEEETTSBHHHHHHHHHHHTCSCEEEE--ETTTTEEEEEECHHHHHHHHHHHHHHCSCGG
T ss_pred             hcCchhhhCCCCC-----CEEEEcCCCCHHHHHHHHHHcCCeEEEEE--eCCCCeEEEEEEHHHHHHHHHHHhhccCCcc
Confidence            4589999998754     37899999999999999999999999999  444 8999999999998765321 0  0001


Q ss_pred             ------cccccc-------ccccCCCeEEEcCCCCHHHHHHHHHhCCCC
Q 031190          128 ------STKVGD-------IMTEENKLITVSPDTKVLRAMQLMTGHMLL  163 (164)
Q Consensus       128 ------~~~v~~-------vm~~~~~~~~v~~~~~l~e~~~~m~~~~~~  163 (164)
                            ..++..       +|.+...++++++++++.++++.|.+++++
T Consensus        93 ~~~~~~~~~~~~i~~~l~~im~~~~~~~~v~~~~~~~~a~~~~~~~~~~  141 (334)
T 2qrd_G           93 AIAEIDKFRLLGLREVERKIGAIPPETIYVHPMHSLMDACLAMSKSRAR  141 (334)
T ss_dssp             GGGGGGSCBHHHHHHHHHHHTCSCSSCCCBCTTSBHHHHHHHHHHSCCS
T ss_pred             HHHHHhhhchhhHHHHHHhhccCCCceeeeCCCCcHHHHHHHHHHCCce
Confidence                  223333       355521238999999999999999988763

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*

Probab=99.12  E-value=2.8e-11  Score=93.85  Aligned_cols=104  Identities=14%  Similarity=0.166  Sum_probs=81.5

Q ss_pred             cccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCC-CcEEEEEehHHHHHHHHHcC---C--
Q 031190           51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ-KSVAGIITERDYLRKIIVQG---R--  124 (164)
Q Consensus        51 ~~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~-~~~vGivt~~dil~~~~~~~---~--  124 (164)
                      +.+.+++++|.++.     ++.++++++++.+|++.|.+++++++||+  |++ ++++|+||.+|++..+....   .  
T Consensus        32 l~~~~v~dim~p~~-----~v~~v~~~~~v~~a~~~~~~~~~~~~pV~--d~~~~~~vGivt~~Dll~~l~~~~~~~~~~  104 (330)
T 2v8q_E           32 MKSHRCYDLIPTSS-----KLVVFDTSLQVKKAFFALVTNGVRAAPLW--DSKKQSFVGMLTITDFINILHRYYKSALVQ  104 (330)
T ss_dssp             HHHSBGGGGSCSEE-----EEEEEETTSBHHHHHHHHHHHTCSEEEEE--ETTTTEEEEEEEHHHHHHHHHHHHHHHTTT
T ss_pred             HHcCcHhhhccCCC-----cEEEEeCCCcHHHHHHHHHHcCCcEEEEE--eCCCCeEEEEEEHHHHHHHHHHHHhccccc
Confidence            46679999995432     49999999999999999999999999999  555 78999999999987654211   0  


Q ss_pred             --CCccc-------ccccccccCCCeEEEcCCCCHHHHHHHHHhCCCC
Q 031190          125 --SSKST-------KVGDIMTEENKLITVSPDTKVLRAMQLMTGHMLL  163 (164)
Q Consensus       125 --~~~~~-------~v~~vm~~~~~~~~v~~~~~l~e~~~~m~~~~~~  163 (164)
                        .....       ++.++|.+  +++++++++++.++++.|.+++++
T Consensus       105 ~~~l~~~~~~~~~~~~~~im~~--~~~~v~~~~~~~~a~~~~~~~~~~  150 (330)
T 2v8q_E          105 IYELEEHKIETWREVYLQDSFK--PLVCISPNASLFDAVSSLIRNKIH  150 (330)
T ss_dssp             CCCGGGCBHHHHHHHHSSSSCC--CCCCBCTTSBHHHHHHHHHHHTCS
T ss_pred             hhHHhhccHHHHHHHHhhcccC--CceEeCCCCCHHHHHHHHHHCCCC
Confidence              00011       23467887  599999999999999999887653

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*

Probab=99.11  E-value=1.4e-10  Score=89.92  Aligned_cols=90  Identities=19%  Similarity=0.190  Sum_probs=75.5

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCcccccccccc------cCCCeEE
Q 031190           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMT------EENKLIT  143 (164)
Q Consensus        70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~v~~vm~------~~~~~~~  143 (164)
                      ++.++.+++++.++++.|.+++++++||+  |++|+++|+||.+|+++.+..........++.++|.      +  ++++
T Consensus       202 ~~~~v~~~~~l~~~~~~m~~~~~~~~~Vv--d~~~~l~Giit~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~~  277 (330)
T 2v8q_E          202 NIAMVRTTTPVYVALGIFVQHRVSALPVV--DEKGRVVDIYSKFDVINLAAEKTYNNLDVSVTKALQHRSHYFE--GVLK  277 (330)
T ss_dssp             SCCCEETTCBHHHHHHHHHHHCCSEEEEE--CTTSBEEEEEEGGGTGGGGGSSCCCCCSSBHHHHGGGCCSCCC--SCCE
T ss_pred             CceEECCCCCHHHHHHHHHHcCCCeEEEE--CCCCcEEEEEEHHHHHHHHhccccccccCcHHHHHhccccccC--CCeE
Confidence            58999999999999999999999999999  778999999999999765432211123568899984      4  5899


Q ss_pred             EcCCCCHHHHHHHHHhCCCC
Q 031190          144 VSPDTKVLRAMQLMTGHMLL  163 (164)
Q Consensus       144 v~~~~~l~e~~~~m~~~~~~  163 (164)
                      +++++++.++++.|.+++++
T Consensus       278 v~~~~~l~~a~~~m~~~~~~  297 (330)
T 2v8q_E          278 CYLHETLEAIINRLVEAEVH  297 (330)
T ss_dssp             ECTTSBHHHHHHHHHHHTCS
T ss_pred             ECCCCcHHHHHHHHHHCCCc
Confidence            99999999999999887763

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=99.08  E-value=5.9e-12  Score=103.22  Aligned_cols=115  Identities=21%  Similarity=0.307  Sum_probs=17.0

Q ss_pred             ccccccccccccchhhh----hc-C--c--ccc-------------cHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHH
Q 031190           31 RPVVSSRFESVSSARME----EH-G--F--EST-------------TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMT   88 (164)
Q Consensus        31 ~~~~~~~~~~~~~~~~~----~~-~--~--~~~-------------~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~   88 (164)
                      .|.+++.|+++++..|+    +. +  +  .++             +++++|..       ++.++++++++.+++++|.
T Consensus        43 iPivsa~M~tVTe~~lA~ala~~GGiGvI~~~~~~e~~a~~v~~vk~~~~~m~~-------~~v~v~~~~tv~ea~~~m~  115 (490)
T 4avf_A           43 IPLVSAAMDTVTEARLAIAMAQEGGIGIIHKNMGIEQQAAEVRKVKKHETAIVR-------DPVTVTPSTKIIELLQMAR  115 (490)
T ss_dssp             SSEEECSCTTTCSHHHHHHHHHHTSEEEECCSSCHHHHHHHHHHHHHCCC------------------------------
T ss_pred             CCccccchhhhCHHHHHHHHHHcCCCccccCCCCHHHHHHHhhhhcccccCccc-------CceEeCCCCcHHHHHHHHH
Confidence            48888999999988876    11 1  1  222             22344554       6899999999999999999


Q ss_pred             HcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCcccccccccc-cCCCeEEEcCCCCHHHHHHHHHhCCC
Q 031190           89 QHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMT-EENKLITVSPDTKVLRAMQLMTGHML  162 (164)
Q Consensus        89 ~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~v~~vm~-~~~~~~~v~~~~~l~e~~~~m~~~~~  162 (164)
                      +++++++||+  | +++++|+||.+|+.. .     ...+.++.++|+ ++ +++++++++++.+++++|.++++
T Consensus       116 ~~~~s~~pVv--d-~g~lvGIVt~rDl~~-~-----~~~~~~V~~vMtp~~-~~vtv~~~~~l~ea~~~m~~~~i  180 (490)
T 4avf_A          116 EYGFSGFPVV--E-QGELVGIVTGRDLRV-K-----PNAGDTVAAIMTPKD-KLVTAREGTPLEEMKAKLYENRI  180 (490)
T ss_dssp             ---------------------------------------------------------------------------
T ss_pred             HhCCCEEEEE--E-CCEEEEEEEhHHhhh-c-----cccCCcHHHHhccCC-CCEEECCCCcHHHHHHHHHHcCC
Confidence            9999999999  7 789999999999842 1     234678999999 32 38999999999999999998875

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C

Probab=99.07  E-value=2.6e-10  Score=88.02  Aligned_cols=89  Identities=13%  Similarity=0.269  Sum_probs=74.8

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCc-----EEEEEehHHHHHHHHHcC--CCCcccccccc---cccCC
Q 031190           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKS-----VAGIITERDYLRKIIVQG--RSSKSTKVGDI---MTEEN  139 (164)
Q Consensus        70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~-----~vGivt~~dil~~~~~~~--~~~~~~~v~~v---m~~~~  139 (164)
                      +++++.+++++.+|++.|.+++++++||+  |+++.     ++|+||.+|+++.+....  ......++.++   |.+  
T Consensus       123 ~~v~v~~~~~l~~a~~~m~~~~~~~lpVv--d~~~~~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~v~~~~~~m~~--  198 (323)
T 3t4n_C          123 DTASIHPSRPLFEACLKMLESRSGRIPLI--DQDEETHREIVVSVLTQYRILKFVALNCRETHFLKIPIGDLNIITQD--  198 (323)
T ss_dssp             -CCCBCTTSBHHHHHHHHHHHTCSEEEEE--EECTTTCCEEEEEEEEHHHHHHHHHHHCGGGGGCCSBGGGTTCSBCT--
T ss_pred             CceEeCCCCcHHHHHHHHHhCCeeEEEEE--ecCCCCCccceEEEecHHHHHHHHHhcCCchhhhhCcHHHcCCCCCC--
Confidence            58999999999999999999999999999  55554     999999999988765332  11235689999   877  


Q ss_pred             CeEEEcCCCCHHHHHHHHHhCCC
Q 031190          140 KLITVSPDTKVLRAMQLMTGHML  162 (164)
Q Consensus       140 ~~~~v~~~~~l~e~~~~m~~~~~  162 (164)
                      +++++++++++.++++.|.++++
T Consensus       199 ~~~~v~~~~~~~~~~~~m~~~~~  221 (323)
T 3t4n_C          199 NMKSCQMTTPVIDVIQMLTQGRV  221 (323)
T ss_dssp             TCCCBCTTSBHHHHHHHHHHHTC
T ss_pred             CcEEECCCCcHHHHHHHHHHcCC
Confidence            59999999999999999988765

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*

Probab=99.06  E-value=7.7e-12  Score=102.90  Aligned_cols=119  Identities=29%  Similarity=0.355  Sum_probs=15.9

Q ss_pred             cccccccccccccchhhh----hcC-c----ccccH------------HHH-hhhcCCCCCCCceEecCCCcHHHHHHHH
Q 031190           30 LRPVVSSRFESVSSARME----EHG-F----ESTTI------------SDI-LKAKGKGADGSWLWCTTDDTVYDAVKSM   87 (164)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~----~~~-~----~~~~v------------~di-m~~~~~~~~~~~~~v~~~~tl~~a~~~~   87 (164)
                      ..|.+++.++++++..++    ..+ +    .+++.            .++ |.+       +++++++++|+.+++++|
T Consensus        51 ~iP~vsa~m~~vt~~~la~~la~~gg~G~I~~~~~~e~~~~~v~~V~~~e~gM~~-------~~~~v~~~~tv~eal~~m  123 (503)
T 1me8_A           51 KIPLVSAIMQSVSGEKMAIALAREGGISFIFGSQSIESQAAMVHAVKNFKAGFVV-------SDSNVKPDQTFADVLAIS  123 (503)
T ss_dssp             SSSEEECSCTTTCSHHHHHHHHHTTCEEEECCSSCHHHHHHHHHHHHTTTC-----------------------------
T ss_pred             cCceEeccchhhhHHHHHHHHHhCCCcceeeCCCCHHHHHHHHhhhhhcccCccc-------CCeEECCCCcHHHHHHHH
Confidence            447888888888776664    221 1    12221            222 666       599999999999999999


Q ss_pred             HHcCCCeEEEEecCCC---CcEEEEEehHHHHHHHHHcCCCCcccccccccccCCCeEEEcCCCCHHHHHHHHHhCCC
Q 031190           88 TQHNVGALVVVKPGEQ---KSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTGHML  162 (164)
Q Consensus        88 ~~~~~~~ipVv~~d~~---~~~vGivt~~dil~~~~~~~~~~~~~~v~~vm~~~~~~~~v~~~~~l~e~~~~m~~~~~  162 (164)
                      .+++++++||+  |++   ++++|+||.+|++..   .  ...+.+++++|++..+++++++++++.+++++|.++++
T Consensus       124 ~~~~~s~~pVv--d~~~~~g~lvGiVt~~Dl~~~---~--~~~~~~V~diM~~~~~~~tv~~~~sl~ea~~~m~~~~i  194 (503)
T 1me8_A          124 QRTTHNTVAVT--DDGTPHGVLLGLVTQRDYPID---L--TQTETKVSDMMTPFSKLVTAHQDTKLSEANKIIWEKKL  194 (503)
T ss_dssp             ------------------------------------------------------------------------------
T ss_pred             HHcCceEEEEE--ECCCcCCeEEEEEEHHHHHhh---h--ccccCcHHHHhCCCCCCEEEcCCCcHHHHHHHHHHcCC
Confidence            99999999999  665   899999999999642   1  23467899999983238999999999999999988775

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=99.04  E-value=6.1e-10  Score=91.21  Aligned_cols=92  Identities=22%  Similarity=0.296  Sum_probs=79.1

Q ss_pred             HHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecC--CCCcEEEEEehHHHHHHHHHcCCCCccccccc
Q 031190           56 ISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPG--EQKSVAGIITERDYLRKIIVQGRSSKSTKVGD  133 (164)
Q Consensus        56 v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d--~~~~~vGivt~~dil~~~~~~~~~~~~~~v~~  133 (164)
                      +.++|.+       ++.++.+++++.++++.|.+++++.+||+  |  ++++++|+||.+|++..      ...+.++.+
T Consensus        92 ~~~im~~-------~~~~v~~~~tv~ea~~~m~~~~~~~~pVv--d~~~~~~lvGivt~~Dl~~~------~~~~~~v~~  156 (491)
T 1zfj_A           92 SENGVII-------DPFFLTPEHKVSEAEELMQRYRISGVPIV--ETLANRKLVGIITNRDMRFI------SDYNAPISE  156 (491)
T ss_dssp             HTTTTSS-------SCCCBCSSSBHHHHHHHHHHTTCSEEEEE--SCTTTCBEEEEEEHHHHHHC------SCSSSBTTT
T ss_pred             HHhcCcC-------CCeEECCCCcHHHHHHHHHHcCCCEEEEE--EeCCCCEEEEEEEHHHHhhh------ccCCCcHHH
Confidence            4566766       69999999999999999999999999999  7  78999999999999642      124678999


Q ss_pred             ccccCCCeEEEcCCCCHHHHHHHHHhCCCC
Q 031190          134 IMTEENKLITVSPDTKVLRAMQLMTGHMLL  163 (164)
Q Consensus       134 vm~~~~~~~~v~~~~~l~e~~~~m~~~~~~  163 (164)
                      +|+++ +++++++++++.+++++|.+++++
T Consensus       157 im~~~-~~~~v~~~~~l~~a~~~m~~~~~~  185 (491)
T 1zfj_A          157 HMTSE-HLVTAAVGTDLETAERILHEHRIE  185 (491)
T ss_dssp             SCCCS-CCCCEETTCCHHHHHHHHHHTTCS
T ss_pred             HcCCC-CCEEECCCCCHHHHHHHHHHcCCC
Confidence            99962 288999999999999999998753

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.02  E-value=5.2e-10  Score=82.05  Aligned_cols=94  Identities=12%  Similarity=0.165  Sum_probs=54.9

Q ss_pred             cccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCcccccc
Q 031190           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVG  132 (164)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~v~  132 (164)
                      +.+++++|.+       ++.++.+++++.+|+++|.+++++.+||+  |++|+++|+||.+|+++.+....      .+.
T Consensus        71 ~~~v~~im~~-------~~~~v~~~~~l~~a~~~m~~~~~~~lpVv--d~~g~lvGiit~~Dil~~~~~~~------~~~  135 (213)
T 1vr9_A           71 DSSVFNKVSL-------PDFFVHEEDNITHALLLFLEHQEPYLPVV--DEEMRLKGAVSLHDFLEALIEAL------AMD  135 (213)
T ss_dssp             TSBSGGGCBC-------TTCCEETTSBHHHHHHHHHHCCCSEEEEE--CTTCBEEEEEEHHHHHHHHHHSC------C--
T ss_pred             CCcHHHHccC-------CCEEECCCCcHHHHHHHHHHhCCCEEEEE--cCCCEEEEEEEHHHHHHHHHHHh------cCC
Confidence            4579999987       59999999999999999999999999999  77799999999999988665321      122


Q ss_pred             cccccCCCeEEEcCCCCHHHHHHHHHhCCC
Q 031190          133 DIMTEENKLITVSPDTKVLRAMQLMTGHML  162 (164)
Q Consensus       133 ~vm~~~~~~~~v~~~~~l~e~~~~m~~~~~  162 (164)
                      +.+... .+.+.....++.++.++|.++++
T Consensus       136 ~~~~~l-~~~~~~~~~~l~~~~~~l~~~~~  164 (213)
T 1vr9_A          136 VPGIRF-SVLLEDKPGELRKVVDALALSNI  164 (213)
T ss_dssp             ------------------------------
T ss_pred             CCcEEE-EEEeCCCCccHHHHHHHHHHCCC
Confidence            333331 01111344458888888887764

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=98.95  E-value=6.6e-11  Score=97.08  Aligned_cols=117  Identities=28%  Similarity=0.440  Sum_probs=13.5

Q ss_pred             ccccccccccccchhhh----hcC-c----ccc-------------cHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHH
Q 031190           31 RPVVSSRFESVSSARME----EHG-F----EST-------------TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMT   88 (164)
Q Consensus        31 ~~~~~~~~~~~~~~~~~----~~~-~----~~~-------------~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~   88 (164)
                      .|.+++.++.++...++    ..+ +    .+.             ++.++|.+       +++++.+++++.+|++.|.
T Consensus        50 iP~is~~m~~v~~~~lA~al~~~GglG~i~~~~~~e~~~~~v~~v~~~~~iM~~-------~~~~v~~~~tv~ea~~~m~  122 (494)
T 1vrd_A           50 IPLVSAAMDTVTEAALAKALAREGGIGIIHKNLTPDEQARQVSIVKKTENGIIY-------DPITVTPDMTVKEAIDLMA  122 (494)
T ss_dssp             SSEEECCCTTTCSHHHHHHHHTTTCEEEECSSSCHHHHHHHHHHHHTC--------------------------------
T ss_pred             ceeEecchHHHhHHHHHHHHHHcCCceEEecCCChHHHHHHHHhhhhHhhcCcc-------CCeEECCCCCHHHHHHHHH
Confidence            37777777777665554    211 1    122             34566776       5999999999999999999


Q ss_pred             HcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCcccccccccccCCCeEEEcCCCCHHHHHHHHHhCCC
Q 031190           89 QHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTGHML  162 (164)
Q Consensus        89 ~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~v~~vm~~~~~~~~v~~~~~l~e~~~~m~~~~~  162 (164)
                      +++++.+||+  |++++++|+||.+|++..      .....++.++|++..+++++++++++.+++++|.++++
T Consensus       123 ~~~~~~~pVv--d~~~~lvGivt~~Dl~~~------~~~~~~v~~im~~~~~~~~v~~~~~l~ea~~~m~~~~~  188 (494)
T 1vrd_A          123 EYKIGGLPVV--DEEGRLVGLLTNRDVRFE------KNLSKKIKDLMTPREKLIVAPPDISLEKAKEILHQHRI  188 (494)
T ss_dssp             --------------------------------------------------------------------------
T ss_pred             HcCceEEEEE--cCCCEEEEEEEHHHHHhh------cCCCCcHHHHhCCCCCCeEECCCCCHHHHHHHHHHcCC
Confidence            9999999999  778999999999999641      12467899999961138999999999999999998875

>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}

Probab=98.94  E-value=2.5e-09  Score=71.77  Aligned_cols=59  Identities=20%  Similarity=0.331  Sum_probs=53.3

Q ss_pred             ccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHH
Q 031190           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII  120 (164)
Q Consensus        52 ~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~  120 (164)
                      ...+++++|.+        +.++++++++.+|++.|.+++...+||+  |++|+++|+||..|+++.+.
T Consensus        67 ~~~~v~~~m~~--------~~~v~~~~~l~~a~~~m~~~~~~~lpVv--d~~g~~~Giit~~dll~~l~  125 (127)
T 3nqr_A           67 EAFSMDKVLRT--------AVVVPESKRVDRMLKEFRSQRYHMAIVI--DEFGGVSGLVTIEDILELIV  125 (127)
T ss_dssp             CCCCHHHHCBC--------CCEEETTCBHHHHHHHHHHTTCCEEEEE--CTTSCEEEEEEHHHHHHHC-
T ss_pred             CCCCHHHHcCC--------CeEECCCCcHHHHHHHHHhcCCeEEEEE--eCCCCEEEEEEHHHHHHHHh
Confidence            56789999965        7899999999999999999999999999  88899999999999987643

>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}

Probab=98.93  E-value=3.3e-09  Score=71.41  Aligned_cols=59  Identities=15%  Similarity=0.309  Sum_probs=54.1

Q ss_pred             ccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHH
Q 031190           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII  120 (164)
Q Consensus        52 ~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~  120 (164)
                      ...+++++|.+        +.++.+++++.+|++.|.+++...+||+  |++|+++|+||..|+++.+.
T Consensus        70 ~~~~v~~~m~~--------~~~v~~~~~l~~~~~~m~~~~~~~~~Vv--d~~g~~vGivt~~dil~~l~  128 (130)
T 3i8n_A           70 GQKQLGAVMRP--------IQVVLNNTALPKVFDQMMTHRLQLALVV--DEYGTVLGLVTLEDIFEHLV  128 (130)
T ss_dssp             TTSBHHHHSEE--------CCEEETTSCHHHHHHHHHHHTCCEEEEE--CTTSCEEEEEEHHHHHHHHH
T ss_pred             CcCCHHHHhcC--------CcCcCCCCcHHHHHHHHHHcCCeEEEEE--cCCCCEEEEEEHHHHHHHHc
Confidence            46789999954        8999999999999999999999999999  88899999999999998765

>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}

Probab=98.90  E-value=4.3e-09  Score=70.83  Aligned_cols=60  Identities=13%  Similarity=0.281  Sum_probs=53.2

Q ss_pred             ccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHH
Q 031190           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIV  121 (164)
Q Consensus        52 ~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~  121 (164)
                      ...+++++|.+        +.++.+++++.+|++.|.+++...+||+  |++|+++|+||..|+++.+..
T Consensus        67 ~~~~v~~~m~~--------~~~v~~~~~l~~~~~~m~~~~~~~~pVv--d~~g~~~Giit~~Dil~~l~g  126 (129)
T 3jtf_A           67 PALDIRSLVRP--------AVFIPEVKRLNVLLREFRASRNHLAIVI--DEHGGISGLVTMEDVLEQIVG  126 (129)
T ss_dssp             TTSCGGGGCBC--------CCEEETTCBHHHHHHHHHTSSCCEEEEE--CC-CCEEEEEEHHHHHHHHHH
T ss_pred             CCcCHHHHhCC--------CeEeCCCCcHHHHHHHHHhcCCeEEEEE--eCCCCEEEEEEHHHHHHHHhC
Confidence            35678999964        8999999999999999999999999999  788999999999999987753

>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}

Probab=98.90  E-value=1.1e-09  Score=77.23  Aligned_cols=59  Identities=24%  Similarity=0.385  Sum_probs=53.3

Q ss_pred             ccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHH
Q 031190           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII  120 (164)
Q Consensus        52 ~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~  120 (164)
                      ...+++++|++       ++.++.+++++.+|+++|.+++++++||+  | +|+++|+||.+|+++.++
T Consensus       103 ~~~~v~~im~~-------~~~tv~~~~~l~~a~~~m~~~~~~~lpVv--d-~g~lvGivt~~Dil~~l~  161 (170)
T 4esy_A          103 RKLTASAVMTQ-------PVVTAAPEDSVGSIADQMRRHGIHRIPVV--Q-DGVPVGIVTRRDLLKLLL  161 (170)
T ss_dssp             TTCBHHHHCBC-------CSCCBCTTSBHHHHHHHHHHTTCSEEEEE--E-TTEEEEEEEHHHHTTTSC
T ss_pred             cccchhhhccc-------CcccCCcchhHHHHHHHHHHcCCcEEEEE--E-CCEEEEEEEHHHHHHHHH
Confidence            35689999998       69999999999999999999999999999  5 589999999999987543

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}

Probab=98.90  E-value=4.8e-09  Score=72.74  Aligned_cols=75  Identities=16%  Similarity=0.318  Sum_probs=57.5

Q ss_pred             ccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCccccc
Q 031190           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKV  131 (164)
Q Consensus        52 ~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~v  131 (164)
                      ...+++++|.+       ++.++.+++++.+|++.|.+++++.+||+  | +|+++|+||.+|+++.+.... ......+
T Consensus        76 ~~~~v~~~m~~-------~~~~v~~~~~l~~~~~~m~~~~~~~lpVv--d-~g~~~Giit~~dil~~l~~~~-~~~~~~~  144 (157)
T 4fry_A           76 KATRVEEIMTA-------KVRYVEPSQSTDECMALMTEHRMRHLPVL--D-GGKLIGLISIGDLVKSVIADQ-QFTISQL  144 (157)
T ss_dssp             SSCBHHHHSBS-------SCCCBCTTSBHHHHHHHHHHHTCSEEEEE--E-TTEEEEEEEHHHHHHHHHTTC-CCCCC--
T ss_pred             cccCHHHHcCC-------CCcEECCCCcHHHHHHHHHHcCCCEEEEE--E-CCEEEEEEEHHHHHHHHHHHH-HhhHHHH
Confidence            46899999987       59999999999999999999999999999  6 699999999999998876432 2233455


Q ss_pred             cccccc
Q 031190          132 GDIMTE  137 (164)
Q Consensus       132 ~~vm~~  137 (164)
                      .+++..
T Consensus       145 ~~~i~~  150 (157)
T 4fry_A          145 EHYIHG  150 (157)
T ss_dssp             ------
T ss_pred             HhhccC
Confidence            555544

>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}

Probab=98.89  E-value=4.3e-09  Score=71.01  Aligned_cols=59  Identities=14%  Similarity=0.234  Sum_probs=53.3

Q ss_pred             ccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHH
Q 031190           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII  120 (164)
Q Consensus        52 ~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~  120 (164)
                      ...+++++|.        ++.++++++++.+|++.|.+++.+.+||+  |++|+++|+||..|+++.+.
T Consensus        68 ~~~~v~~~m~--------~~~~v~~~~~l~~~~~~m~~~~~~~~~Vv--d~~g~lvGiit~~Dil~~l~  126 (130)
T 3hf7_A           68 TKEIMLRAAD--------EIYFVPEGTPLSTQLVKFQRNKKKVGLVV--DEYGDIQGLVTVEDILEEIV  126 (130)
T ss_dssp             CHHHHHHHSB--------CCCEEETTCBHHHHHHHHHHHCCCEEEEE--CTTSCEEEEEEHHHHHHHHH
T ss_pred             chhhHHHhcc--------CCeEeCCCCcHHHHHHHHHhcCCeEEEEE--cCCCCEEEEeeHHHHHHHHh
Confidence            3467899994        38999999999999999999999999999  88899999999999998765

>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}

Probab=98.89  E-value=5.5e-09  Score=71.58  Aligned_cols=60  Identities=22%  Similarity=0.324  Sum_probs=54.9

Q ss_pred             ccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHH
Q 031190           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII  120 (164)
Q Consensus        52 ~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~  120 (164)
                      ...++.++|.+       ++.++.+++++.+|++.|.+++++.+||+  |++|+++|+||.+|+++.+.
T Consensus        83 ~~~~v~~~m~~-------~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv--d~~g~~~Giit~~dil~~~~  142 (152)
T 4gqw_A           83 NGKLVGDLMTP-------APLVVEEKTNLEDAAKILLETKYRRLPVV--DSDGKLVGIITRGNVVRAAL  142 (152)
T ss_dssp             -CCBHHHHSEE-------SCCCEESSSBHHHHHHHHHHSSCCEEEEE--CTTSBEEEEEEHHHHHHHHH
T ss_pred             ccccHHHhcCC-------CceEECCCCcHHHHHHHHHHCCCCEEEEE--CCCCcEEEEEEHHHHHHHHH
Confidence            35789999998       58999999999999999999999999999  78899999999999998775

>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}

Probab=98.88  E-value=6e-09  Score=71.61  Aligned_cols=59  Identities=20%  Similarity=0.381  Sum_probs=53.9

Q ss_pred             cccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHH
Q 031190           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIV  121 (164)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~  121 (164)
                      ..+++++| .       ++.++++++++.+|++.|.+++...+||+  |++|+++|+||..|+++.+..
T Consensus        87 ~~~v~~~m-~-------~~~~v~~~~~l~~~~~~m~~~~~~~l~Vv--d~~g~~~Giit~~dil~~l~~  145 (148)
T 3lv9_A           87 KIELEEIL-R-------DIIYISENLTIDKALERIRKEKLQLAIVV--DEYGGTSGVVTIEDILEEIVG  145 (148)
T ss_dssp             CCCGGGTC-B-------CCEEEETTSBHHHHHHHHHHHTCSEEEEE--CTTSSEEEEEEHHHHHHHHHH
T ss_pred             CccHHHhc-C-------CCeEECCCCCHHHHHHHHHhcCCeEEEEE--eCCCCEEEEEEHHHHHHHHhC
Confidence            67889999 4       49999999999999999999999999999  788999999999999987753

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}

Probab=98.85  E-value=6.4e-09  Score=73.39  Aligned_cols=61  Identities=20%  Similarity=0.294  Sum_probs=56.1

Q ss_pred             ccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHH
Q 031190           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIV  121 (164)
Q Consensus        52 ~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~  121 (164)
                      ...+++++|.+       ++.++.+++++.+|+++|.+++++.+||+  |++|+++|+||.+|+++.+..
T Consensus        96 ~~~~v~~~m~~-------~~~~v~~~~~l~~a~~~m~~~~~~~lpVv--d~~g~~vGiit~~dil~~~~~  156 (180)
T 3sl7_A           96 YGKVVGDLMTP-------SPLVVRDSTNLEDAARLLLETKFRRLPVV--DADGKLIGILTRGNVVRAALQ  156 (180)
T ss_dssp             TTCBHHHHSEE-------SCCCEETTSBHHHHHHHHTTSTTCEEEEE--CTTCBEEEEEEHHHHHHHHHH
T ss_pred             ccccHHHHhCC-------CceEeCCCCcHHHHHHHHHHcCCCEEEEE--CCCCeEEEEEEHHHHHHHHHH
Confidence            45789999997       58999999999999999999999999999  788999999999999987764

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*

Probab=98.85  E-value=5.6e-09  Score=69.16  Aligned_cols=57  Identities=26%  Similarity=0.406  Sum_probs=52.5

Q ss_pred             ccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHH
Q 031190           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI  119 (164)
Q Consensus        54 ~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~  119 (164)
                      .+++++|.+       ++.++.+++++.++++.|.+++.+.+||+  |++|+++|+||.+|+++.+
T Consensus        62 ~~v~~~~~~-------~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv--d~~g~~~Givt~~dl~~~l  118 (122)
T 3kpb_A           62 KTIEEIMTR-------NVITAHEDEPVDHVAIKMSKYNISGVPVV--DDYRRVVGIVTSEDISRLF  118 (122)
T ss_dssp             CBGGGTSBS-------SCCCEETTSBHHHHHHHHHHHTCSEEEEE--CTTCBEEEEEEHHHHHHHH
T ss_pred             cCHHHHhcC-------CCeEECCCCCHHHHHHHHHHhCCCeEEEE--CCCCCEEEEEeHHHHHHHh
Confidence            479999987       59999999999999999999999999999  7789999999999998765

>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}

Probab=98.84  E-value=8.6e-09  Score=71.33  Aligned_cols=59  Identities=25%  Similarity=0.396  Sum_probs=54.2

Q ss_pred             cccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHH
Q 031190           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIV  121 (164)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~  121 (164)
                      ..+++++| +       ++.++.+++++.+|++.|.+++...+||+  |++|+++|+||..|+++.+..
T Consensus        85 ~~~v~~~m-~-------~~~~v~~~~~l~~~~~~m~~~~~~~lpVv--d~~g~~vGivt~~dil~~l~~  143 (153)
T 3oco_A           85 KAKISTIM-R-------DIVSVPENMKVPDVMEEMSAHRVPMAIVI--DEYGGTSGIITDKDVYEELFG  143 (153)
T ss_dssp             TSBGGGTC-B-------CCEEEETTSBHHHHHHHHHHTTCSCEEEE--CTTSCEEEEECHHHHHHHHHC
T ss_pred             CCcHHHHh-C-------CCeEECCCCCHHHHHHHHHHcCCcEEEEE--eCCCCEEEEeeHHHHHHHHhc
Confidence            67899999 5       49999999999999999999999999999  788999999999999987763

>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}

Probab=98.84  E-value=9.6e-09  Score=72.59  Aligned_cols=59  Identities=12%  Similarity=0.219  Sum_probs=54.0

Q ss_pred             cccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHH
Q 031190           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIV  121 (164)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~  121 (164)
                      ..+++++| +       ++.++.+++++.+|++.|.++++..+||+  |++|+++|+||..|+++.+..
T Consensus       106 ~~~v~~im-~-------~~~~v~~~~~l~~a~~~m~~~~~~~~pVv--d~~g~lvGiit~~Dil~~l~~  164 (172)
T 3lhh_A          106 RLELVDLV-K-------NCNFVPNSLSGMELLEHFRTTGSQMVFVV--DEYGDLKGLVTLQDMMDALTG  164 (172)
T ss_dssp             CCCGGGGC-B-------CCEEEETTCCHHHHHHHHHHHTCSEEEEE--CTTSCEEEEEEHHHHHHHHHT
T ss_pred             cccHHHHh-c-------CCeEeCCCCCHHHHHHHHHHcCCeEEEEE--eCCCCEEEEeeHHHHHHHHhC
Confidence            56889999 4       59999999999999999999999999999  788999999999999987763

>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}

Probab=98.83  E-value=3.7e-09  Score=71.86  Aligned_cols=60  Identities=18%  Similarity=0.323  Sum_probs=53.5

Q ss_pred             cccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHH
Q 031190           51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII  120 (164)
Q Consensus        51 ~~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~  120 (164)
                      ....+++++|.+        +.++.+++++.+|+++|.+++...+||+  |++|+++|+||.+|+++.+.
T Consensus        67 ~~~~~v~~~m~~--------~~~v~~~~~l~~~~~~m~~~~~~~~~Vv--d~~g~lvGiit~~Dil~~l~  126 (136)
T 3lfr_A           67 GDSDDVKKLLRP--------ATFVPESKRLNVLLREFRANHNHMAIVI--DEYGGVAGLVTIEDVLEQIV  126 (136)
T ss_dssp             GGGCCGGGTCBC--------CCEEETTCBHHHHHHHHHHHTCCEEEEE--CTTSCEEEEEEHHHHHTTC-
T ss_pred             CCCcCHHHHcCC--------CeEECCCCcHHHHHHHHHhcCCeEEEEE--eCCCCEEEEEEHHHHHHHHh
Confidence            356789999965        8999999999999999999999999999  88899999999999987543

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1

Probab=98.81  E-value=1.2e-08  Score=67.71  Aligned_cols=59  Identities=19%  Similarity=0.345  Sum_probs=53.7

Q ss_pred             ccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHH
Q 031190           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII  120 (164)
Q Consensus        52 ~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~  120 (164)
                      ...+++++|.+       ++.++.+++++.++++.|.+++.+.+||+  |+ |+++|+||.+|+++.+.
T Consensus        63 ~~~~v~~~m~~-------~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv--d~-~~~~Gvit~~dl~~~l~  121 (125)
T 1pbj_A           63 AEVKVWEVMER-------DLVTISPRATIKEAAEKMVKNVVWRLLVE--ED-DEIIGVISATDILRAKM  121 (125)
T ss_dssp             TTSBHHHHCBC-------GGGEECTTSCHHHHHHHHHHHTCSEEEEE--ET-TEEEEEEEHHHHHHHHC
T ss_pred             cccCHHHHcCC-------CCeEECCCCCHHHHHHHHHhcCCcEEEEE--EC-CEEEEEEEHHHHHHHHH
Confidence            56799999987       59999999999999999999999999999  56 99999999999987653

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}

Probab=98.80  E-value=4.7e-09  Score=70.42  Aligned_cols=58  Identities=10%  Similarity=0.224  Sum_probs=53.3

Q ss_pred             ccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHH
Q 031190           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII  120 (164)
Q Consensus        54 ~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~  120 (164)
                      .+++++|.+       ++.++.+++++.+|++.|.+++...+||+  |++|+++|+||..|+++.+.
T Consensus        68 ~~v~~~m~~-------~~~~v~~~~~l~~~~~~~~~~~~~~lpVv--d~~g~~~Giit~~dll~~l~  125 (128)
T 3gby_A           68 EKLGEELLE-------TVRSYRPGEQLFDNLISVAAAKCSVVPLA--DEDGRYEGVVSRKRILGFLA  125 (128)
T ss_dssp             CBCCGGGCB-------CCCCBCTTSBGGGSHHHHHHCSSSEEEEE--CTTCBEEEEEEHHHHHHHHH
T ss_pred             CcHHHHccC-------CCcEECCCCCHHHHHHHHHhCCCcEEEEE--CCCCCEEEEEEHHHHHHHHH
Confidence            678999987       58999999999999999999999999999  78899999999999988653

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1

Probab=98.80  E-value=1.1e-08  Score=68.85  Aligned_cols=61  Identities=30%  Similarity=0.356  Sum_probs=55.0

Q ss_pred             ccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHH
Q 031190           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIV  121 (164)
Q Consensus        52 ~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~  121 (164)
                      ...+++++|.+       ++.++++++++.+|++.|.+++.+.+||+  |++|+++|+||..|+++.+..
T Consensus        65 ~~~~v~~~~~~-------~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv--d~~g~~~Giit~~dll~~~~~  125 (133)
T 2ef7_A           65 LETKAEEFMTA-------SLITIREDSPITGALALMRQFNIRHLPVV--DDKGNLKGIISIRDITRAIDD  125 (133)
T ss_dssp             TTCBGGGTSEE-------CCCCEETTSBHHHHHHHHHHHTCSEEEEE--CTTSCEEEEEEHHHHHHHHHH
T ss_pred             cccCHHHHcCC-------CCEEECCCCCHHHHHHHHHHcCCCEEEEE--CCCCeEEEEEEHHHHHHHHHH
Confidence            35789999987       59999999999999999999999999999  778999999999999887653

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}

Probab=98.80  E-value=1.6e-08  Score=68.38  Aligned_cols=61  Identities=28%  Similarity=0.451  Sum_probs=54.1

Q ss_pred             cccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcC-----CCeEEEEecCCCCcEEEEEehHHHHHHHH
Q 031190           51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHN-----VGALVVVKPGEQKSVAGIITERDYLRKII  120 (164)
Q Consensus        51 ~~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~-----~~~ipVv~~d~~~~~vGivt~~dil~~~~  120 (164)
                      ..+.+++++|.+       ++.++.+++++.++++.|.+++     .+.+||+  |++|+++|+||.+|+++.+.
T Consensus        70 ~~~~~v~~~m~~-------~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~l~Vv--d~~g~~~Giit~~dll~~~~  135 (138)
T 2p9m_A           70 TLETTIGDVMTK-------DVITIHEDASILEAIKKMDISGKKEEIINQLPVV--DKNNKLVGIISDGDIIRTIS  135 (138)
T ss_dssp             CSSCBHHHHSCS-------SCCCEETTSBHHHHHHHHTCC-----CCCEEEEE--CTTSBEEEEEEHHHHHHHHH
T ss_pred             cCCcCHHHHhCC-------CcEEECCCCCHHHHHHHHHhcCCccccccEEEEE--CCCCeEEEEEEHHHHHHHHH
Confidence            356789999987       5999999999999999999999     9999999  77899999999999987653

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A

Probab=98.79  E-value=3.1e-08  Score=67.24  Aligned_cols=66  Identities=20%  Similarity=0.334  Sum_probs=53.5

Q ss_pred             ccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHH
Q 031190           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII  120 (164)
Q Consensus        52 ~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~  120 (164)
                      ...++.++|.+.... ..++.++.+++++.+|++.|.+++.+.+||+  |++|+++|+||.+|+++.+.
T Consensus        75 ~~~~v~~~m~~~~~~-~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vv--d~~g~~~Giit~~dil~~l~  140 (144)
T 2nyc_A           75 LSLSVGEALMRRSDD-FEGVYTCTKNDKLSTIMDNIRKARVHRFFVV--DDVGRLVGVLTLSDILKYIL  140 (144)
T ss_dssp             CCSBHHHHHHHCC-------CEECTTSBHHHHHHHHHHHTCSEEEEE--CTTSBEEEEEEHHHHHHHHH
T ss_pred             CCccHHHHHhcCccc-cCCCeEECCCCcHHHHHHHHHHCCCCEEEEE--CCCCCEEEEEEHHHHHHHHH
Confidence            367899999762000 0027899999999999999999999999999  77899999999999988765

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}

Probab=98.78  E-value=6.9e-09  Score=72.69  Aligned_cols=60  Identities=20%  Similarity=0.236  Sum_probs=54.2

Q ss_pred             cccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHH
Q 031190           51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII  120 (164)
Q Consensus        51 ~~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~  120 (164)
                      ....+++++|.+       ++.++.+++++.+|++.|.+++++.+||+  |+ |+++|+||..|+++.+.
T Consensus        90 ~~~~~v~~~m~~-------~~~~v~~~~~l~~a~~~m~~~~~~~lpVv--d~-g~~~Giit~~dil~~~~  149 (165)
T 3fhm_A           90 SLQQSVSVAMTK-------NVVRCQHNSTTDQLMEIMTGGRFRHVPVE--EN-GRLAGIISIGDVVKARI  149 (165)
T ss_dssp             GGTSBGGGTSBS-------SCCCBCTTCBHHHHHHHHHHHTCSEEEEE--ET-TEEEEEEEHHHHHHHTT
T ss_pred             cccCCHHHHhcC-------CCeEECCCCcHHHHHHHHHHcCCCEEEEE--EC-CEEEEEEEHHHHHHHHH
Confidence            356789999987       59999999999999999999999999999  66 99999999999988654

>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}

Probab=98.78  E-value=1.3e-08  Score=74.18  Aligned_cols=61  Identities=16%  Similarity=0.163  Sum_probs=55.5

Q ss_pred             ccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHH
Q 031190           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIV  121 (164)
Q Consensus        52 ~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~  121 (164)
                      .+.+++++|.+       ++.++++++++.+|++.|.++++..+||+  |++|+++|+||..|+++.+..
T Consensus       114 ~~~~v~~im~~-------~~~~v~~~~~l~~a~~~m~~~~~~~lpVV--D~~g~lvGiIT~~Dil~~i~~  174 (205)
T 3kxr_A          114 PHEPLISLLSE-------DSRALTANTTLLDAAEAIEHSREIELPVI--DDAGELIGRVTLRAATALVRE  174 (205)
T ss_dssp             TTSBGGGGCCS-------SCCCEETTSCHHHHHHHHHTSSCSEEEEE--CTTSBEEEEEEHHHHHHHHHH
T ss_pred             CcchHHHHhcC-------CCeEECCCCCHHHHHHHHHhcCCCEEEEE--cCCCeEEEEEEHHHHHHHHHH
Confidence            45688999987       59999999999999999999999999999  888999999999999987754

>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}

Probab=98.77  E-value=7.7e-09  Score=72.22  Aligned_cols=58  Identities=22%  Similarity=0.322  Sum_probs=52.1

Q ss_pred             ccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHH
Q 031190           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII  120 (164)
Q Consensus        52 ~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~  120 (164)
                      ...+++++|.+       ++.++++++++.+|++.|.++++  +||+  |++|+++|+||.+|+++.+.
T Consensus        84 ~~~~v~~im~~-------~~~~v~~~~~l~~~~~~m~~~~~--lpVV--d~~g~l~GiiT~~Dil~~~~  141 (156)
T 3k6e_A           84 ADTDIVHMTKT-------DVAVVSPDFTITEVLHKLVDESF--LPVV--DAEGIFQGIITRKSILKAVN  141 (156)
T ss_dssp             TTSBGGGTCBC-------SCCCBCTTCCHHHHHHHTTTSSE--EEEE--CTTSBEEEEEEHHHHHHHHH
T ss_pred             cccCHHHhhcC-------CceecccccHHHHHHHHHHHcCC--eEEE--ecCCEEEEEEEHHHHHHHHH
Confidence            46789999987       69999999999999999988764  9999  88999999999999998764

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1

Probab=98.77  E-value=2.3e-08  Score=69.34  Aligned_cols=60  Identities=20%  Similarity=0.318  Sum_probs=54.5

Q ss_pred             cccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHH
Q 031190           51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII  120 (164)
Q Consensus        51 ~~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~  120 (164)
                      ....+++++|.+        +.++.+++++.+|++.|.+++++.+||+  |++|+++|+||..|+++.+.
T Consensus        93 ~~~~~v~~im~~--------~~~v~~~~~l~~a~~~m~~~~~~~lpVv--d~~g~~vGiit~~dll~~l~  152 (157)
T 1o50_A           93 LIAKNASEIMLD--------PVYVHMDTPLEEALKLMIDNNIQEMPVV--DEKGEIVGDLNSLEILLALW  152 (157)
T ss_dssp             CSSCBHHHHCBC--------CCCBCTTSBHHHHHHHHHHHTCSEEEEE--CTTSCEEEEEEHHHHHHHHH
T ss_pred             HcCCcHHHHcCC--------CeEECCCCCHHHHHHHHHHCCCcEEEEE--cCCCEEEEEEEHHHHHHHHH
Confidence            356789999986        7899999999999999999999999999  77899999999999988765

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1

Probab=98.77  E-value=1.3e-08  Score=68.70  Aligned_cols=60  Identities=20%  Similarity=0.347  Sum_probs=54.4

Q ss_pred             cccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHH
Q 031190           51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII  120 (164)
Q Consensus        51 ~~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~  120 (164)
                      ....+++++|.+       ++.++.+++++.+|++.|.+++.+.+||+  | +|+++|+||.+|+++.+.
T Consensus        71 ~~~~~v~~~m~~-------~~~~v~~~~~l~~~~~~m~~~~~~~lpVv--d-~g~~~Giit~~dll~~~~  130 (135)
T 2rc3_A           71 VKDTQVKEIMTR-------QVAYVDLNNTNEDCMALITEMRVRHLPVL--D-DGKVIGLLSIGDLVKDAI  130 (135)
T ss_dssp             GGGSBGGGTSBC-------SCCCBCTTCBHHHHHHHHHHHTCSEEEEE--E-TTEEEEEEEHHHHHHHHH
T ss_pred             cccCCHHHhccC-------CCeEECCCCcHHHHHHHHHHhCCCEEEEE--e-CCEEEEEEEHHHHHHHHH
Confidence            356789999987       59999999999999999999999999999  6 689999999999988664

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1

Probab=98.75  E-value=2.4e-08  Score=69.64  Aligned_cols=59  Identities=22%  Similarity=0.390  Sum_probs=53.7

Q ss_pred             ccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHH
Q 031190           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII  120 (164)
Q Consensus        52 ~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~  120 (164)
                      ...++.++|.+       ++.++.+++++.+|++.|.+++.+.+||+  |+ |+++|+||..|+++.+.
T Consensus        76 ~~~~v~~im~~-------~~~~v~~~~~l~~a~~~m~~~~~~~lpVv--d~-g~lvGiit~~dil~~~~  134 (160)
T 2o16_A           76 FETPLFEVMHT-------DVTSVAPQAGLKESAIYMQKHKIGCLPVV--AK-DVLVGIITDSDFVTIAI  134 (160)
T ss_dssp             CCCBHHHHSCS-------CEEEBCTTSBHHHHHHHHHHTTCSCEEEE--ET-TEEEEEECHHHHHHHHH
T ss_pred             cccCHHHHhcC-------CCeEECCCCCHHHHHHHHHHhCCCEEEEE--EC-CEEEEEEEHHHHHHHHH
Confidence            46789999987       59999999999999999999999999999  55 99999999999988654

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*

Probab=98.74  E-value=1.1e-08  Score=76.14  Aligned_cols=58  Identities=21%  Similarity=0.306  Sum_probs=49.5

Q ss_pred             ccccHHHHhh-hcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHH
Q 031190           52 ESTTISDILK-AKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRK  118 (164)
Q Consensus        52 ~~~~v~dim~-~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~  118 (164)
                      ...+++++|+ .       ++.++.+++++.+|+++|.+++++.+||+  |++|+++|+||.+|+++.
T Consensus       183 ~~~~v~~im~~~-------~~~~~~~~~~~~~~~~~m~~~~~~~~pVv--d~~~~~~Giit~~dll~~  241 (245)
T 3l2b_A          183 QSLPVDYVMTKD-------NLVAVSTDDLVEDVKVTMSETRYSNYPVI--DENNKVVGSIARFHLIST  241 (245)
T ss_dssp             GGSBHHHHSBCT-------TCCCEETTSBHHHHHHHHHHHCCSEEEEE--CTTCBEEEEEECC-----
T ss_pred             cCCceeeEecCC-------ccEEECCCCcHHHHHHHHHhcCCceEEEE--cCCCeEEEEEEHHHhhch
Confidence            4578999998 5       59999999999999999999999999999  788999999999999763

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A

Probab=98.74  E-value=2.6e-08  Score=66.93  Aligned_cols=57  Identities=23%  Similarity=0.468  Sum_probs=52.2

Q ss_pred             ccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHH
Q 031190           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRK  118 (164)
Q Consensus        52 ~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~  118 (164)
                      ...+++++|.+       ++.++++++++.+|++.|.+++.+.+||+  |+ |+++|+||.+|+++.
T Consensus        72 ~~~~v~~~m~~-------~~~~v~~~~~l~~~~~~m~~~~~~~l~Vv--d~-g~~~Giit~~dil~~  128 (133)
T 1y5h_A           72 NTATAGELARD-------SIYYVDANASIQEMLNVMEEHQVRRVPVI--SE-HRLVGIVTEADIARH  128 (133)
T ss_dssp             TTSBHHHHHTT-------CCCCEETTCCHHHHHHHHHHHTCSEEEEE--ET-TEEEEEEEHHHHHHT
T ss_pred             cccCHHHHhcC-------CCEEECCCCCHHHHHHHHHHcCCCEEEEE--EC-CEEEEEEEHHHHHHH
Confidence            45789999987       59999999999999999999999999999  55 899999999999864

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}

Probab=98.73  E-value=4.4e-08  Score=68.01  Aligned_cols=65  Identities=17%  Similarity=0.157  Sum_probs=53.2

Q ss_pred             cccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHH
Q 031190           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIV  121 (164)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~  121 (164)
                      ..++.++|..... ....+.++.+++++.+|++.|.+++.+++||+  | +|+++|+||.+|+++.+..
T Consensus        83 ~~~v~~~m~~~~~-~~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVv--d-~g~l~Giit~~dil~~~~~  147 (164)
T 2pfi_A           83 QQCLQDILARGCP-TEPVTLTLFSETTLHQAQNLFKLLNLQSLFVT--S-RGRAVGCVSWVEMKKAISN  147 (164)
T ss_dssp             CCBHHHHHHTTCC-CBCCCCCEETTCBHHHHHHHHHHTTCSEEEEE--E-TTEEEEEEEHHHHHHHHHH
T ss_pred             cchhhhhhccccc-ccCCceEECCCCcHHHHHHHHHHhCCCEEEEE--E-CCEEEEEEEHHHHHHHHHh
Confidence            4679999987200 00016899999999999999999999999999  6 6899999999999987764

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0

Probab=98.73  E-value=2.6e-08  Score=68.35  Aligned_cols=59  Identities=20%  Similarity=0.312  Sum_probs=53.1

Q ss_pred             ccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHH
Q 031190           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIV  121 (164)
Q Consensus        52 ~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~  121 (164)
                      ...+++++|.+       ++.++.+++++.+|++.|.++++  +||+  |++|+++|+||..|+++.+..
T Consensus        85 ~~~~v~~~m~~-------~~~~v~~~~~l~~a~~~~~~~~~--l~Vv--d~~g~~~Giit~~dil~~l~~  143 (150)
T 3lqn_A           85 EEMKVEQVMKQ-------DIPVLKLEDSFAKALEMTIDHPF--ICAV--NEDGYFEGILTRRAILKLLNK  143 (150)
T ss_dssp             GGCBGGGTCBS-------SCCEEETTCBHHHHHHHHHHCSE--EEEE--CTTCBEEEEEEHHHHHHHHHH
T ss_pred             hcCCHHHHhcC-------CCceeCCCCCHHHHHHHHHhCCE--EEEE--CCCCcEEEEEEHHHHHHHHHH
Confidence            46789999987       59999999999999999999887  9999  788999999999999987654

>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}

Probab=98.73  E-value=2.4e-08  Score=69.36  Aligned_cols=55  Identities=16%  Similarity=0.320  Sum_probs=50.4

Q ss_pred             ccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHH
Q 031190           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYL  116 (164)
Q Consensus        52 ~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil  116 (164)
                      ...+++++|.+        +.++++++++.+|++.|.+++...+||+  |++|+++|+||..|++
T Consensus       101 ~~~~v~~im~~--------~~~v~~~~~l~~a~~~m~~~~~~~~~Vv--d~~g~~~Givt~~Dil  155 (156)
T 3oi8_A          101 EQFHLKSILRP--------AVFVPEGKSLTALLKEFREQRNHMAIVI--DEYGGTSGLVTFEDII  155 (156)
T ss_dssp             GGCCHHHHCBC--------CCEEETTSBHHHHHHHHHHTTCCEEEEE--CTTSSEEEEEEHHHHC
T ss_pred             CcccHHHHcCC--------CEEECCCCCHHHHHHHHHhcCCeEEEEE--CCCCCEEEEEEHHHhc
Confidence            35689999965        8999999999999999999999999999  8889999999999984

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=98.72  E-value=2.4e-10  Score=94.23  Aligned_cols=87  Identities=16%  Similarity=0.256  Sum_probs=42.7

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEEEEecCC---CCcEEEEEehHHHHHHHHHcCCCCcccccccccccCCCeEEEcC
Q 031190           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGE---QKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSP  146 (164)
Q Consensus        70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~---~~~~vGivt~~dil~~~~~~~~~~~~~~v~~vm~~~~~~~~v~~  146 (164)
                      ++.++.+++++.+|+++|.+++++.+||+  |+   +++++|+||.+|+.. .. .  .....++.++|++..+++++++
T Consensus       117 ~~~~v~~~~tv~ea~~~m~~~~~~~~pVv--d~~~~~~~lvGiVt~~Dl~~-~~-~--~~~~~~v~~vm~~~~~~~tv~~  190 (514)
T 1jcn_A          117 DPVVLSPSHTVGDVLEAKMRHGFSGIPIT--ETGTMGSKLVGIVTSRDIDF-LA-E--KDHTTLLSEVMTPRIELVVAPA  190 (514)
T ss_dssp             SCCCCCC-----------------CEESC--C--------CCEECTTTTC--------------------CCBCCCCEET
T ss_pred             CCEEECCCCCHHHHHHHHHhcCCCEEEEE--eCCCcCCEEEEEEEHHHHHh-hh-h--ccCCCCHHHHhCCCCCCeEECC
Confidence            58999999999999999999999999999  66   589999999999854 21 1  1245789999987112889999


Q ss_pred             CCCHHHHHHHHHhCCC
Q 031190          147 DTKVLRAMQLMTGHML  162 (164)
Q Consensus       147 ~~~l~e~~~~m~~~~~  162 (164)
                      ++++.+++++|.++++
T Consensus       191 ~~~l~ea~~~m~~~~~  206 (514)
T 1jcn_A          191 GVTLKEANEILQRSKK  206 (514)
T ss_dssp             TCCSTTTTTHHHHHTC
T ss_pred             CCCHHHHHHHHHHcCC
Confidence            9999999999988775

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A

Probab=98.71  E-value=2.3e-08  Score=68.01  Aligned_cols=58  Identities=24%  Similarity=0.277  Sum_probs=52.3

Q ss_pred             ccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHH
Q 031190           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI  119 (164)
Q Consensus        52 ~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~  119 (164)
                      .+.+++++|.+       ++.++.++ ++.+|++.|.+++.+.+||+  |++|+++|+||.+|+++.+
T Consensus        69 ~~~~v~~~m~~-------~~~~v~~~-~l~~a~~~m~~~~~~~l~Vv--d~~g~~~Giit~~dll~~~  126 (141)
T 2rih_A           69 LDGPAMPIANS-------PITVLDTD-PVHVAAEKMRRHNIRHVVVV--NKNGELVGVLSIRDLCFER  126 (141)
T ss_dssp             TTSBSGGGCBC-------CCEEETTS-BHHHHHHHHHHHTCSEEEEE--CTTSCEEEEEEHHHHHSCH
T ss_pred             CCCCHHHHcCC-------CCeEEcCC-CHHHHHHHHHHcCCeEEEEE--cCCCcEEEEEEHHHHHHHH
Confidence            35789999987       59999999 99999999999999999999  7789999999999997643

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1

Probab=98.68  E-value=1.6e-09  Score=88.72  Aligned_cols=80  Identities=30%  Similarity=0.422  Sum_probs=0.0

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCcccccccccccCCCeEEEcCCCC
Q 031190           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTK  149 (164)
Q Consensus        70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~v~~vm~~~~~~~~v~~~~~  149 (164)
                      ++.++.+++++.++++.|.+++++.+||+  |+ ++++|+|+.+|++.        ....++.++|++  ++++++++++
T Consensus       102 ~~~~v~~~~tv~ea~~~~~~~~~~~~pVv--d~-~~lvGivt~~Dl~~--------~~~~~v~~im~~--~~~~v~~~~~  168 (486)
T 2cu0_A          102 DVITIAPDETVDFALFLMEKHGIDGLPVV--ED-EKVVGIITKKDIAA--------REGKLVKELMTK--EVITVPESIE  168 (486)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CceEECCCCCHHHHHHHHHHcCCcEEEEE--EC-CEEEEEEEHHHhcc--------CCCCCHHHHccC--CCeEECCcCc
Confidence            68999999999999999999999999999  65 99999999999954        135689999997  5899999999


Q ss_pred             HHHHHHHHHhCCC
Q 031190          150 VLRAMQLMTGHML  162 (164)
Q Consensus       150 l~e~~~~m~~~~~  162 (164)
                      +.+++++|.++++
T Consensus       169 l~eal~~m~~~~~  181 (486)
T 2cu0_A          169 VEEALKIMIENRI  181 (486)
T ss_dssp             -------------
T ss_pred             HHHHHHHHHHcCC
Confidence            9999999988864

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*

Probab=98.67  E-value=2.8e-08  Score=69.11  Aligned_cols=64  Identities=20%  Similarity=0.366  Sum_probs=55.3

Q ss_pred             cccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCC---cEEEEEehHHHHHHHHH
Q 031190           51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQK---SVAGIITERDYLRKIIV  121 (164)
Q Consensus        51 ~~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~---~~vGivt~~dil~~~~~  121 (164)
                      ....+++++|.+..     ++.++.+++++.+|++.|.+++++++||+  |++|   +++|+||.+|+++.+..
T Consensus        78 ~~~~~v~~~m~~~~-----~~~~v~~~~~l~~a~~~m~~~~~~~lpVv--d~~g~~~~~vGiit~~dil~~l~~  144 (159)
T 3fv6_A           78 LTSVPVHIIMTRMP-----NITVCRREDYVMDIAKHLIEKQIDALPVI--KDTDKGFEVIGRVTKTNMTKILVS  144 (159)
T ss_dssp             TTTCBGGGTSEETT-----SCCCBCTTSBHHHHHHHHHHHTCSEEEEE--EECSSSEEEEEEEEHHHHHHHHHH
T ss_pred             ccCcCHHHHHcCCC-----CcEEECCCCCHHHHHHHHHHcCCcEEEEE--eCCCcceeEEEEEEHHHHHHHHHH
Confidence            35678999998621     28999999999999999999999999999  6677   99999999999887653

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1

Probab=98.65  E-value=4e-08  Score=66.40  Aligned_cols=59  Identities=15%  Similarity=0.333  Sum_probs=53.5

Q ss_pred             ccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHH
Q 031190           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII  120 (164)
Q Consensus        52 ~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~  120 (164)
                      ...++.++|.+       ++.++++++++.+|++.|.+++.+++ |+  |++|+++|+||..|+++.+.
T Consensus        70 ~~~~v~~~m~~-------~~~~v~~~~~l~~~~~~m~~~~~~~l-Vv--d~~g~~~Giit~~dil~~~~  128 (138)
T 2yzi_A           70 YDIPVERIMTR-------NLITANVNTPLGEVLRKMAEHRIKHI-LI--EEEGKIVGIFTLSDLLEASR  128 (138)
T ss_dssp             TTSBGGGTCBC-------SCCEEETTSBHHHHHHHHHHHTCSEE-EE--EETTEEEEEEEHHHHHHHHH
T ss_pred             ccCCHHHHhhC-------CCeEECCCCcHHHHHHHHHhcCCCEE-EE--CCCCCEEEEEEHHHHHHHHH
Confidence            45789999987       59999999999999999999999999 99  67899999999999988764

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}

Probab=98.65  E-value=6.4e-08  Score=66.83  Aligned_cols=59  Identities=22%  Similarity=0.380  Sum_probs=53.0

Q ss_pred             ccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHH
Q 031190           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIV  121 (164)
Q Consensus        52 ~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~  121 (164)
                      ...++.++|.+       ++.++++++++.+|++.|.++++  +||+  |++|+++|+||.+|+++.+..
T Consensus        81 ~~~~v~~~m~~-------~~~~v~~~~~l~~a~~~m~~~~~--l~Vv--d~~g~~~Giit~~dil~~~~~  139 (157)
T 2emq_A           81 ETMKVEEVMNR-------NIPRLRLDDSLMKAVGLIVNHPF--VCVE--NDDGYFAGIFTRREVLKQLNK  139 (157)
T ss_dssp             GTCBGGGTCBC-------CCCEEETTSBHHHHHHHHHHSSE--EEEE--CSSSSEEEEEEHHHHHHHHHH
T ss_pred             cCCcHHHHhCC-------CCceecCCCcHHHHHHHHhhCCE--EEEE--cCCCeEEEEEEHHHHHHHHHH
Confidence            45789999987       59999999999999999999987  9999  778999999999999987654

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*

Probab=98.65  E-value=5e-08  Score=69.08  Aligned_cols=61  Identities=21%  Similarity=0.223  Sum_probs=54.8

Q ss_pred             ccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHc
Q 031190           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQ  122 (164)
Q Consensus        52 ~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~  122 (164)
                      ...+++++|.+       ++.++.+++++.+|++.|.+++.+++||+  | +|+++|+||.+|+++.+...
T Consensus       106 ~~~~v~~im~~-------~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv--d-~g~~vGiit~~dll~~l~~~  166 (185)
T 2j9l_A          106 PTLKLRNILDL-------SPFTVTDLTPMEIVVDIFRKLGLRQCLVT--H-NGRLLGIITKKDVLKHIAQM  166 (185)
T ss_dssp             CCEECGGGEES-------SCCEEETTSBHHHHHHHHHHHTCSEEEEE--E-TTEEEEEEEHHHHHHHHHHH
T ss_pred             cCccHHHhhCc-------CCeEeCCCCCHHHHHHHHHhCCCcEEEEE--E-CCEEEEEEEHHHHHHHHHHh
Confidence            45689999987       59999999999999999999999999999  6 79999999999999877643

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*

Probab=98.63  E-value=4.7e-08  Score=67.18  Aligned_cols=56  Identities=18%  Similarity=0.364  Sum_probs=50.7

Q ss_pred             ccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHH
Q 031190           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (164)
Q Consensus        52 ~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~  117 (164)
                      ...+++++|.+       ++.++.+++++.+|++.|.+++++.+||+  |++ +++|+||..|+++
T Consensus        93 ~~~~v~~~m~~-------~~~~v~~~~~l~~a~~~m~~~~~~~lpVv--d~~-~~~Giit~~dil~  148 (149)
T 3k2v_A           93 RDASIADVMTR-------GGIRIRPGTLAVDALNLMQSRHITCVLVA--DGD-HLLGVVHMHDLLR  148 (149)
T ss_dssp             TTCBHHHHSEE-------SCCEECTTCBHHHHHHHHHHHTCSEEEEE--ETT-EEEEEEEHHHHTC
T ss_pred             ccCcHHHHcCC-------CCeEECCCCCHHHHHHHHHHcCCCEEEEe--cCC-EEEEEEEHHHhhc
Confidence            56789999987       59999999999999999999999999999  554 9999999999853

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A

Probab=98.63  E-value=4.6e-08  Score=69.70  Aligned_cols=59  Identities=20%  Similarity=0.288  Sum_probs=53.5

Q ss_pred             ccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHH
Q 031190           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI  119 (164)
Q Consensus        52 ~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~  119 (164)
                      ...+++++|.+       ++.++.+++++.+|++.|.+++.+.+||+  |++|+++|+||..|+++.+
T Consensus        73 ~~~~v~~im~~-------~~~~v~~~~~l~~a~~~m~~~~~~~lpVv--d~~g~~~Givt~~dll~~~  131 (184)
T 1pvm_A           73 DEVPIRLVMRK-------PIPKVKSDYDVKDVAAYLSENGLERCAVV--DDPGRVVGIVTLTDLSRYL  131 (184)
T ss_dssp             GGSBGGGTSBS-------SCCEEETTCBHHHHHHHHHHHTCSEEEEE--CTTCCEEEEEEHHHHTTTS
T ss_pred             ccCCHHHHhCC-------CCcEECCCCCHHHHHHHHHHcCCcEEEEE--cCCCeEEEEEEHHHHHHHH
Confidence            45789999987       59999999999999999999999999999  7779999999999997643

>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1

Probab=98.62  E-value=8.6e-08  Score=73.28  Aligned_cols=61  Identities=23%  Similarity=0.263  Sum_probs=55.3

Q ss_pred             ccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHH
Q 031190           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIV  121 (164)
Q Consensus        52 ~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~  121 (164)
                      ...+++++|.+       ++.++++++++.+|++.|.++++.++||+  |++|+++|+||..|+++.+..
T Consensus       199 ~~~~v~~im~~-------~~~~v~~~~~l~ea~~~m~~~~~~~lpVV--d~~g~lvGiIT~~Dil~~i~~  259 (286)
T 2oux_A          199 DDTLIADILNE-------RVISVHVGDDQEDVAQTIRDYDFLAVPVT--DYDDHLLGIVTVDDIIDVIDD  259 (286)
T ss_dssp             TTSBHHHHSBS-------CCCCEETTSBHHHHHHHHHHHTCSEEEEE--CTTCBEEEEEEHHHHHHHHHH
T ss_pred             CCCcHHHHcCC-------CCeeecCCCCHHHHHHHHHHcCCcEEEEE--cCCCeEEEEEEHHHHHHHHHH
Confidence            45789999987       59999999999999999999999999999  788999999999999887653

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1

Probab=98.61  E-value=9e-08  Score=66.40  Aligned_cols=59  Identities=14%  Similarity=0.282  Sum_probs=52.9

Q ss_pred             ccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHH
Q 031190           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIV  121 (164)
Q Consensus        52 ~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~  121 (164)
                      ...++.++|.+       ++.++.+++++.+|++.|.++++  +||+  |++|+++|+||.+|+++.+..
T Consensus        84 ~~~~v~~~m~~-------~~~~v~~~~~l~~a~~~m~~~~~--lpVv--d~~g~~vGiit~~dil~~~~~  142 (159)
T 1yav_A           84 DQITVEEVMLT-------DIPRLHINDPIMKGFGMVINNGF--VCVE--NDEQVFEGIFTRRVVLKELNK  142 (159)
T ss_dssp             TTSBHHHHSBC-------SCCEEETTSBHHHHHHHTTTCSE--EEEE--CTTCBEEEEEEHHHHHHHHHH
T ss_pred             ccCCHHHhcCC-------CCceEcCCCCHHHHHHHHHhCCE--EEEE--eCCCeEEEEEEHHHHHHHHHH
Confidence            56789999987       59999999999999999999877  9999  778999999999999887653

>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}

Probab=98.58  E-value=9.5e-08  Score=67.73  Aligned_cols=50  Identities=12%  Similarity=0.167  Sum_probs=46.9

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHH
Q 031190           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIV  121 (164)
Q Consensus        70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~  121 (164)
                      ++.++++++++.+|++.|.+++...+||+  |++|+++|+||..|+++.+..
T Consensus       108 ~~~~v~~~~~l~~al~~m~~~~~~~~~Vv--de~g~lvGiIT~~Dil~~l~~  157 (173)
T 3ocm_A          108 DPIIVHESIGILRLMDTLKRSRGQLVLVA--DEFGAIEGLVTPIDVFEAIAG  157 (173)
T ss_dssp             CCCEECGGGCHHHHHHHHHHSTTCCEEEE--CTTCCEEEEECHHHHHHHHHC
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCeEEEEE--eCCCCEEEEEeHHHHHHHHhC
Confidence            48999999999999999999999999999  788999999999999988764

>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A

Probab=98.55  E-value=7.5e-08  Score=73.17  Aligned_cols=59  Identities=24%  Similarity=0.375  Sum_probs=52.4

Q ss_pred             cccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHH
Q 031190           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII  120 (164)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~  120 (164)
                      ..+++++|.+       ++.++++++++.++++.|.+++...+||+  |++|+++|+||..|+++.+.
T Consensus       198 ~~~v~~im~~-------~~~~v~~~~~l~~a~~~m~~~~~~~lpVv--d~~g~lvGivT~~Dil~~i~  256 (278)
T 2yvy_A          198 RTRVAEIMNP-------KVVYVRTDTDQEEVARLMADYDFTVLPVV--DEEGRLVGIVTVDDVLDVLE  256 (278)
T ss_dssp             TCBSTTTSBS-------SCCCEETTSBHHHHHHHHHHHTCSEEEEE--CTTSBEEEEEEHHHHHHHC-
T ss_pred             CCcHHHHhCC-------CCeEEeCCCCHHHHHHHHHhcCCCEEEEE--eCCCeEEEEEEHHHHHHHHH
Confidence            4567788866       59999999999999999999999999999  78899999999999987654

>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A

Probab=98.40  E-value=5e-07  Score=73.73  Aligned_cols=61  Identities=23%  Similarity=0.361  Sum_probs=54.7

Q ss_pred             ccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHH
Q 031190           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIV  121 (164)
Q Consensus        52 ~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~  121 (164)
                      .+.+++++|.+       ++.++++++++.++++.|.+++...+||+  |++|+++|+||..|+++.+..
T Consensus       217 ~~~~v~dim~~-------~~~~v~~~~~l~ea~~~m~~~~~~~lpVV--De~g~lvGiIT~~Dil~~i~~  277 (473)
T 2zy9_A          217 PRTRVAEIMNP-------KVVYVRTDTDQEEVARLMADYDFTVLPVV--DEEGRLVGIVTVDDVLDVLEA  277 (473)
T ss_dssp             TTSBGGGTSBS-------SCCCEESSSBHHHHHHHHHHHTCSEEEEE--CTTSBEEEEEEHHHHHHHHHH
T ss_pred             CCCcHHHHhCC-------CCeEEeCCCcHHHHHHHHHhcCCcEEEEE--cCCCEEEEEEehHhhHHHHHH
Confidence            35678888876       59999999999999999999999999999  888999999999999887653

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=98.33  E-value=6.5e-06  Score=67.77  Aligned_cols=61  Identities=23%  Similarity=0.308  Sum_probs=55.2

Q ss_pred             ccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHH
Q 031190           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII  120 (164)
Q Consensus        52 ~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~  120 (164)
                      .+.+++++|++.      ++++++++.++.+++++|.+++...+||+  |++|+++|+||.+|+++.+.
T Consensus       173 ~~~~V~~vM~~~------~~vtv~~~~~l~eal~~m~~~~i~~lpVV--De~g~l~GiIT~~Dil~~~~  233 (511)
T 3usb_A          173 YSIKISDVMTKE------QLITAPVGTTLSEAEKILQKYKIEKLPLV--DNNGVLQGLITIKDIEKVIE  233 (511)
T ss_dssp             SSSBHHHHCCCC------CCCCEETTCCHHHHHHHHHHHTCSEEEEE--CTTSBEEEEEEHHHHHHHHH
T ss_pred             CCCcHHHhcccC------CCEEECCCCCHHHHHHHHHHcCCCEEEEE--eCCCCEeeeccHHHHHHhhh
Confidence            457899999852      39999999999999999999999999999  88999999999999988764

>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1

Probab=98.31  E-value=6.6e-07  Score=67.21  Aligned_cols=48  Identities=8%  Similarity=0.052  Sum_probs=44.5

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHH
Q 031190           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII  120 (164)
Q Consensus        70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~  120 (164)
                      .++++.+++++.++..+|...++.++||+  + .|+++||||++||++++.
T Consensus       198 sP~tv~~~tsL~~v~~LF~~lglr~l~V~--~-~GrLVGIVTrkDl~kai~  245 (250)
T 2d4z_A          198 SPFQLVEGTSLQKTHTLFSLLGLDRAYVT--S-MGKLVGVVALAEIQAAIE  245 (250)
T ss_dssp             CSCCBCTTCBHHHHHHHHHHHTCSEEEEE--E-TTEEEEEEEHHHHHHHHH
T ss_pred             CCeEECCCCcHHHHHHHHHHhCCeEEEEE--E-CCEEEEEEEHHHHHHHHH
Confidence            69999999999999999999999999999  4 699999999999987653

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*

Probab=98.23  E-value=5.3e-07  Score=74.10  Aligned_cols=61  Identities=20%  Similarity=0.342  Sum_probs=0.0

Q ss_pred             cccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHH
Q 031190           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII  120 (164)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~  120 (164)
                      +.+++++|++.+     ++.++++++++.+|+++|.+++++.+||+  |++|+++|+||.+|+++.+.
T Consensus       160 ~~~V~diM~~~~-----~~~tv~~~~sl~ea~~~m~~~~i~~lpVV--De~g~lvGiIT~~Dil~~~~  220 (503)
T 1me8_A          160 ETKVSDMMTPFS-----KLVTAHQDTKLSEANKIIWEKKLNALPII--DDDQHLRYIVFRKDYDRSQV  220 (503)
T ss_dssp             --------------------------------------------------------------------
T ss_pred             cCcHHHHhCCCC-----CCEEEcCCCcHHHHHHHHHHcCCCEEEEE--cCCCeEEEEEEecHHHHhhh
Confidence            457889998722     29999999999999999999999999999  78899999999999988665

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}

Probab=98.05  E-value=2.2e-06  Score=72.32  Aligned_cols=53  Identities=15%  Similarity=0.060  Sum_probs=47.1

Q ss_pred             cHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHH
Q 031190           55 TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (164)
Q Consensus        55 ~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~  117 (164)
                      ++.++|++       ++.++++++++.++.+.|.+++.+.+||+   ++|+++|+||.+|+++
T Consensus       569 ~v~~iMt~-------~pitV~~~~~l~ea~~~M~~~~i~~lpVv---e~G~lvGIVT~~Dll~  621 (632)
T 3org_A          569 SLVVPCDV-------SPIVVTSYSLVRQLHFLFVMLMPSMIYVT---ERGKLVGIVEREDVAY  621 (632)
T ss_dssp             --CCSCCC-------CCCEEETTCBHHHHHHHHHHTCCSEEEEE---ETTEEEEEEEGGGTEE
T ss_pred             ccchhhcC-------CCceecCCCcHHHHHHHHHhcCCCEEEEE---ECCEEEEEEehhhHHH
Confidence            37778887       69999999999999999999999999999   3689999999999965

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=97.94  E-value=1.3e-05  Score=65.52  Aligned_cols=60  Identities=18%  Similarity=0.305  Sum_probs=52.5

Q ss_pred             cccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHH
Q 031190           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII  120 (164)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~  120 (164)
                      +.+++++|.+.      ++.++++++++.++++.|.+++...+||+  |++|+++|+||..|+++.+.
T Consensus       151 ~~~v~~im~~~------~~~~v~~~~~l~~a~~~m~~~~~~~lpVV--d~~g~lvGivt~~Dil~~~~  210 (491)
T 1zfj_A          151 NAPISEHMTSE------HLVTAAVGTDLETAERILHEHRIEKLPLV--DNSGRLSGLITIKDIEKVIE  210 (491)
T ss_dssp             SSBTTTSCCCS------CCCCEETTCCHHHHHHHHHHTTCSEEEEE--CTTSBEEEEEEHHHHHHHHH
T ss_pred             CCcHHHHcCCC------CCEEECCCCCHHHHHHHHHHcCCCEEEEE--cCCCcEEEEEEHHHHHHHHh
Confidence            45677777741      28899999999999999999999999999  88999999999999988765

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*

Probab=97.91  E-value=9.7e-06  Score=66.89  Aligned_cols=59  Identities=10%  Similarity=0.159  Sum_probs=50.6

Q ss_pred             ccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCC----CCcEEEEEehHHHHHHHHH
Q 031190           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGE----QKSVAGIITERDYLRKIIV  121 (164)
Q Consensus        52 ~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~----~~~~vGivt~~dil~~~~~  121 (164)
                      ...+|+++|.+       ++.++.+++++.+++++|.++++  +||+  |+    +|+++|+||..|+++.+..
T Consensus       449 ~~~~V~~im~~-------~~~~v~~~~~l~~a~~~m~~~~~--~pVV--d~~~~~~g~lvGIVT~~Dll~~l~~  511 (527)
T 3pc3_A          449 QSDPAIKALNK-------RVIRLNESEILGKLARVLEVDPS--VLIL--GKNPAGKVELKALATKLDVTTFIAA  511 (527)
T ss_dssp             TTSBGGGGEET-------TCCEEETTSBHHHHHHHHTTCSE--EEEE--EECSSSCEEEEEEEEHHHHHHHHHT
T ss_pred             CCCcHHHHhcC-------CCeEECCCCcHHHHHHHHhhCCE--EEEE--eCCcccCCeEEEEEEHHHHHHHHHh
Confidence            45688999987       69999999999999999977664  7999  55    3899999999999988764

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=97.83  E-value=4.6e-06  Score=68.42  Aligned_cols=60  Identities=17%  Similarity=0.318  Sum_probs=42.4

Q ss_pred             ccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHH
Q 031190           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRK  118 (164)
Q Consensus        52 ~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~  118 (164)
                      .+.++.++|++++     ++++++++.++.+++++|.+++...+||+  |++|+++|+||.+|+++.
T Consensus       147 ~~~~v~diM~p~~-----~~vtv~~~~~l~ea~~~m~~~~i~~lpVV--De~G~l~GiIT~~DIl~~  206 (496)
T 4fxs_A          147 LTKSVAAVMTPKE-----RLATVKEGATGAEVQEKMHKARVEKILVV--NDEFQLKGMITAKDFHKA  206 (496)
T ss_dssp             TTSBGGGTSEEGG-----GCCEEECC----CGGGTCC---CCCEEEE--CTTSBCCEEECCC-----
T ss_pred             CCCcHHHHhcCCC-----CCEEECCCCCHHHHHHHHHHcCCCEEEEE--cCCCCEEEeehHhHHHHh
Confidence            4578999998321     28999999999999999999999999999  889999999999999764

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=97.81  E-value=2.6e-06  Score=69.78  Aligned_cols=61  Identities=16%  Similarity=0.272  Sum_probs=0.0

Q ss_pred             ccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHH
Q 031190           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI  119 (164)
Q Consensus        52 ~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~  119 (164)
                      .+.+++++|+++.     +++++++++++.+|+++|.++++..+||+  |++|+++|+||.+|+++..
T Consensus       145 ~~~~V~~vMtp~~-----~~vtv~~~~~l~ea~~~m~~~~i~~lpVV--De~g~lvGiIT~~Dil~~~  205 (490)
T 4avf_A          145 AGDTVAAIMTPKD-----KLVTAREGTPLEEMKAKLYENRIEKMLVV--DENFYLRGLVTFRDIEKAK  205 (490)
T ss_dssp             --------------------------------------------------------------------
T ss_pred             cCCcHHHHhccCC-----CCEEECCCCcHHHHHHHHHHcCCCEEEEE--cCCCcEEEEEehHHhhhhc
Confidence            3568899998321     28999999999999999999999999999  8899999999999998754

>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*

Probab=97.76  E-value=3.5e-06  Score=69.05  Aligned_cols=58  Identities=16%  Similarity=0.253  Sum_probs=0.0

Q ss_pred             cccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHH
Q 031190           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI  119 (164)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~  119 (164)
                      +.+|+++|++       ++++++.+.++.+|.++|.++++..+||+  |++++++|+||.+|+++..
T Consensus       199 ~~~V~evMT~-------~lvt~~~~~~leeA~~iL~~~kieklpVV--d~~g~LvGlIT~kDi~k~~  256 (556)
T 4af0_A          199 ETPIKSVMTT-------EVVTGSSPITLEKANSLLRETKKGKLPIV--DSNGHLVSLVARSDLLKNQ  256 (556)
T ss_dssp             -------------------------------------------------------------------
T ss_pred             ceEhhhhccc-------ceEEecCCCCHHHHHHHHHHccccceeEE--ccCCcEEEEEEechhhhhh
Confidence            4689999998       59999999999999999999999999999  8899999999999997643

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=97.76  E-value=3.7e-06  Score=68.87  Aligned_cols=61  Identities=23%  Similarity=0.382  Sum_probs=4.4

Q ss_pred             cccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHH
Q 031190           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII  120 (164)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~  120 (164)
                      +.++.++|.+..     ++.++.+++++.+++++|.++++..+||+  |++|+++|+||..|+++.+.
T Consensus       154 ~~~v~~im~~~~-----~~~~v~~~~~l~ea~~~m~~~~~~~lpVV--d~~g~lvGiIt~~Dll~~~~  214 (494)
T 1vrd_A          154 SKKIKDLMTPRE-----KLIVAPPDISLEKAKEILHQHRIEKLPLV--SKDNKLVGLITIKDIMSVIE  214 (494)
T ss_dssp             --------------------------------------------------------------CHHHHT
T ss_pred             CCcHHHHhCCCC-----CCeEECCCCCHHHHHHHHHHcCCcEEEEE--cCCCeEEEEEEHHHHHhhhc
Confidence            357888998521     38999999999999999999999999999  78899999999999988654

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1

Probab=97.69  E-value=5.3e-06  Score=67.89  Aligned_cols=57  Identities=21%  Similarity=0.351  Sum_probs=0.0

Q ss_pred             cccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHH
Q 031190           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRK  118 (164)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~  118 (164)
                      ..++.++|.+       ++.++++++++.++++.|.+++.+.+||+  |++|+++|+||.+|+++.
T Consensus       149 ~~~v~~im~~-------~~~~v~~~~~l~eal~~m~~~~~~~lpVV--de~g~lvGiiT~~Dil~~  205 (486)
T 2cu0_A          149 GKLVKELMTK-------EVITVPESIEVEEALKIMIENRIDRLPVV--DERGKLVGLITMSDLVAR  205 (486)
T ss_dssp             ------------------------------------------------------------------
T ss_pred             CCCHHHHccC-------CCeEECCcCcHHHHHHHHHHcCCCEEEEE--ecCCeEEEEEEHHHHHHh
Confidence            3467788886       58999999999999999999999999999  788999999999999774

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=97.30  E-value=9.3e-06  Score=66.83  Aligned_cols=59  Identities=17%  Similarity=0.303  Sum_probs=40.7

Q ss_pred             cccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHH
Q 031190           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRK  118 (164)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~  118 (164)
                      ..++.++|.+..     ++.++.+++++.+++++|.+++...+||+  |++|+++|+||.+|+++.
T Consensus       172 ~~~v~~vm~~~~-----~~~tv~~~~~l~ea~~~m~~~~~~~lpVV--d~~g~lvGiIt~~Dll~~  230 (514)
T 1jcn_A          172 TTLLSEVMTPRI-----ELVVAPAGVTLKEANEILQRSKKGKLPIV--NDCDELVAIIARTDLKKN  230 (514)
T ss_dssp             ---------CCB-----CCCCEETTCCSTTTTTHHHHHTCSCCCEE--SSSSCCC----CCCCSSC
T ss_pred             CCCHHHHhCCCC-----CCeEECCCCCHHHHHHHHHHcCCCcccEE--CCCCeEEEEEEHHHHHHH
Confidence            457888998521     28999999999999999999999999999  888999999999999753

>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}

Probab=91.40  E-value=0.23  Score=29.19  Aligned_cols=23  Identities=22%  Similarity=0.290  Sum_probs=21.2

Q ss_pred             eEEEcCCCCHHHHHHHHHhCCCC
Q 031190          141 LITVSPDTKVLRAMQLMTGHMLL  163 (164)
Q Consensus       141 ~~~v~~~~~l~e~~~~m~~~~~~  163 (164)
                      ++++++++++.+|+++|.++++.
T Consensus         2 ~vtv~p~~tv~ea~~~M~~~~i~   24 (70)
T 3ghd_A            2 AIVVQPKDTVDRVAKILSRNKAG   24 (70)
T ss_dssp             EEEECTTCBHHHHHHHHHHTTCS
T ss_pred             CEEECCCCcHHHHHHHHHHcCCC
Confidence            78999999999999999999874

>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62

Probab=82.45  E-value=0.55  Score=28.37  Aligned_cols=34  Identities=12%  Similarity=0.237  Sum_probs=30.3

Q ss_pred             hhHHHHHhhcCCCChHHHHHHhCccccccccccc
Q 031190            2 QGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVVS   35 (164)
Q Consensus         2 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~   35 (164)
                      +.|.++++..+.++..+|++.++.+..+++.++.
T Consensus         5 ~~Il~~L~~~g~vsv~eLa~~l~VS~~TIRrdL~   38 (78)
T 1xn7_A            5 IQVRDLLALRGRMEAAQISQTLNTPQPMINAMLQ   38 (78)
T ss_dssp             HHHHHHHHHSCSBCHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCcHHHHHHHHCcCHHHHHHHHH
Confidence            5688889999999999999999999999887764

>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}

Probab=82.02  E-value=0.45  Score=29.46  Aligned_cols=35  Identities=9%  Similarity=0.268  Sum_probs=31.0

Q ss_pred             ChhHHHHHhhcCCCChHHHHHHhCccccccccccc
Q 031190            1 MQGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVVS   35 (164)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~   35 (164)
                      ++.|.++++..+.++..+|++.++++..+++.++.
T Consensus         4 L~~Il~~L~~~g~vsv~eLA~~l~VS~~TIRrDL~   38 (87)
T 2k02_A            4 LMEVRDMLALQGRMEAKQLSARLQTPQPLIDAMLE   38 (87)
T ss_dssp             THHHHHHHHHSCSEEHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCcHHHHHHHHCcCHHHHHHHHH
Confidence            36788899999999999999999999999887764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	164
d2rc3a1	127	d.37.1.1 (A:23-149) Uncharacterized protein NE2398	1e-06
d2nyca1	140	d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's	5e-05
d2v8qe2	159	d.37.1.1 (E:23-181) 5'-AMP-activated protein kinas	3e-04
d2v8qe2	159	d.37.1.1 (E:23-181) 5'-AMP-activated protein kinas	4e-04
d2v8qe2	159	d.37.1.1 (E:23-181) 5'-AMP-activated protein kinas	0.002
d1jr1a4	120	d.37.1.1 (A:113-232) Type II inosine monophosphate	3e-04
d1jr1a4	120	d.37.1.1 (A:113-232) Type II inosine monophosphate	0.001
d2ooxe1	179	d.37.1.1 (E:3-181) Uncharacterized protein C1556.0	3e-04
d2v8qe1	145	d.37.1.1 (E:182-326) 5'-AMP-activated protein kina	0.001
d2yzia1	132	d.37.1.1 (A:4-135) Uncharacterized protein PH0107	0.002
d1yava3	132	d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bac	0.003
d2yzqa2	122	d.37.1.1 (A:1-122) Uncharacterized protein PH1780	0.004

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

 Score = 43.2 bits (101), Expect = 1e-06
 Identities = 33/107 (30%), Positives = 56/107 (52%), Gaps = 9/107 (8%)

Query: 54  TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITER 113
            T+  +L+ KG     + +    DD+V++A++ M   N+GAL+V+K  +     GI+TER
Sbjct: 2   KTVKHLLQEKGH----TVVAIGPDDSVFNAMQKMAADNIGALLVMKDEKLV---GILTER 54

Query: 114 DYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTGH 160
           D+ RK  +  +  K T+V +IMT +     V  +      M L+T  
Sbjct: 55  DFSRKSYLLDKPVKDTQVKEIMTRQV--AYVDLNNTNEDCMALITEM 99

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 140

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.0 bits (90), Expect = 5e-05
 Identities = 15/92 (16%), Positives = 32/92 (34%), Gaps = 6/92 (6%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGD 133
           C     V D ++ +TQ  V ++ ++       +  +    D L  I     +  S  VG+
Sbjct: 22  CQMTTPVIDVIQMLTQGRVSSVPIIDENGY--LINVYEAYDVLGLIKGGIYNDLSLSVGE 79

Query: 134 IMTEENKL----ITVSPDTKVLRAMQLMTGHM 161
            +   +       T + + K+   M  +    
Sbjct: 80  ALMRRSDDFEGVYTCTKNDKLSTIMDNIRKAR 111

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 159

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.7 bits (84), Expect = 3e-04
 Identities = 16/124 (12%), Positives = 40/124 (32%), Gaps = 22/124 (17%)

Query: 51  FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGII 110
            +S    D++    K      +   T   V  A  ++  + V A  +    +Q    G++
Sbjct: 10  MKSHRCYDLIPTSSK-----LVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQS-FVGML 63

Query: 111 TERDYLRKIIVQGRSSKST--------------KVGDIMTEENKLITVSPDTKVLRAMQL 156
           T  D++  +    +S+                        +    + +SP+  +  A+  
Sbjct: 64  TITDFINILHRYYKSALVQIYELEEHKIETWREVYLQDSFKPL--VCISPNASLFDAVSS 121

Query: 157 MTGH 160
           +  +
Sbjct: 122 LIRN 125

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 159

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.7 bits (84), Expect = 4e-04
 Identities = 10/47 (21%), Positives = 25/47 (53%), Gaps = 1/47 (2%)

Query: 71  WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117
            +  + + +++DAV S+ ++ +  L V+   E  +   I+T +  L+
Sbjct: 106 LVCISPNASLFDAVSSLIRNKIHRLPVID-PESGNTLYILTHKRILK 151

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 159

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 34.8 bits (79), Expect = 0.002
 Identities = 7/35 (20%), Positives = 16/35 (45%)

Query: 127 KSTKVGDIMTEENKLITVSPDTKVLRAMQLMTGHM 161
           KS +  D++   +KL+      +V +A   +  + 
Sbjct: 11  KSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNG 45

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 120

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 36.3 bits (83), Expect = 3e-04
 Identities = 12/87 (13%), Positives = 27/87 (31%), Gaps = 3/87 (3%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGD 133
            +  D V D  ++  +H    + +   G        +      R I           + +
Sbjct: 9   LSPKDRVRDVFEAKARHGFCGIPITDTGRMG---SRLVGIISSRDIDFLKEEEHDRFLEE 65

Query: 134 IMTEENKLITVSPDTKVLRAMQLMTGH 160
           IMT+   L+       +  A +++   
Sbjct: 66  IMTKREDLVVAPAGITLKEANEILQRS 92

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 120

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 34.7 bits (79), Expect = 0.001
 Identities = 9/47 (19%), Positives = 18/47 (38%), Gaps = 2/47 (4%)

Query: 71  WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117
            +      T+ +A + + +   G L +V   E   +  II   D  +
Sbjct: 73  LVVAPAGITLKEANEILQRSKKGKLPIVN--ENDELVAIIARTDLKK 117

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 179

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 36.9 bits (84), Expect = 3e-04
 Identities = 6/52 (11%), Positives = 22/52 (42%), Gaps = 3/52 (5%)

Query: 71  WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKS---VAGIITERDYLRKI 119
            ++     ++ DA  +M++     + ++    +     +  ++T+   L+ I
Sbjct: 117 TIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRILKFI 168

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.6 bits (81), Expect = 0.001
 Identities = 13/91 (14%), Positives = 29/91 (31%), Gaps = 6/91 (6%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGD 133
             T   VY A+    QH V A  +    E+  V  I ++ D +     +  ++    V  
Sbjct: 25  VRTTTPVYVALGIFVQHRVSA--LPVVDEKGRVVDIYSKFDVINLAAEKTYNNLDVSVTK 82

Query: 134 IMTEEN----KLITVSPDTKVLRAMQLMTGH 160
            +   +     ++       +   +  +   
Sbjct: 83  ALQHRSHYFEGVLKCYLHETLEAIINRLVEA 113

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]} Length = 132

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 34.8 bits (79), Expect = 0.002
 Identities = 8/48 (16%), Positives = 21/48 (43%), Gaps = 3/48 (6%)

Query: 73  WCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII 120
               +  + + ++ M +H +  +++ + G+   + GI T  D L    
Sbjct: 82  TANVNTPLGEVLRKMAEHRIKHILIEEEGK---IVGIFTLSDLLEASR 126

>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]} Length = 132

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein YkuL
species: Bacillus subtilis [TaxId: 1423]

 Score = 33.8 bits (76), Expect = 0.003
 Identities = 8/33 (24%), Positives = 14/33 (42%)

Query: 129 TKVGDIMTEENKLITVSPDTKVLRAMQLMTGHM 161
             VG  M E +K+  V     +  A+ ++T   
Sbjct: 2   ATVGQFMIEADKVAHVQVGNNLEHALLVLTKTG 34

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]} Length = 122

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 33.3 bits (75), Expect = 0.004
 Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 73  WCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII 120
               +DT+  A K M +++   +VVV    +    GI+T  D +R+  
Sbjct: 72  VVKENDTLKKAAKLMLEYDYRRVVVVD--SKGKPVGILTVGDIIRRYF 117

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	164
d1y5ha3	123	Hypothetical protein Rv2626c {Mycobacterium tuberc	99.72
d1pvma4	142	Hypothetical protein Ta0289 {Archaeon Thermoplasma	99.71
d2rc3a1	127	Uncharacterized protein NE2398 {Nitrosomonas europ	99.71
d2o16a3	139	Hypothetical protein VC0737 {Vibrio cholerae [TaxI	99.68
d2yzia1	132	Uncharacterized protein PH0107 {Pyrococcus horikos	99.67
d1yava3	132	Hypothetical protein YkuL {Bacillus subtilis [TaxI	99.66
d1pbja3	120	Hypothetical protein MTH1622 {Archaeon Methanobact	99.65
d2yzqa2	122	Uncharacterized protein PH1780 {Pyrococcus horikos	99.61
d2ef7a1	127	Uncharacterized protein ST2348 {Sulfolobus tokodai	99.61
d1vr9a3	121	Hypothetical protein TM0892, CBS tandem {Thermotog	99.6
d2ouxa2	127	Magnesium transporter MgtE {Enterococcus faecalis	99.58
d2yzqa1	156	Uncharacterized protein PH1780 {Pyrococcus horikos	99.56
d3ddja1	141	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.53
d2yvxa2	144	Magnesium transporter MgtE {Thermus thermophilus [	99.51
d2riha1	131	Uncharacterized protein PAE2072 {Pyrobaculum aerop	99.47
d1zfja4	126	Type II inosine monophosphate dehydrogenase CBS do	99.46
d2j9la1	169	Chloride channel protein 5, ClC-5 {Human (Homo sap	99.45
d2ooxe2	153	Uncharacterized protein C1556.08c {Schizosaccharom	99.45
d2d4za3	160	Chloride channel protein, CBS tandem {Marbled elec	99.45
d3ddja2	135	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.42
d1o50a3	145	Hypothetical protein TM0935 {Thermotoga maritima [	99.41
d2v8qe2	159	5'-AMP-activated protein kinase subunit gamma-1, A	99.39
d2v8qe1	145	5'-AMP-activated protein kinase subunit gamma-1, A	99.39
d2nyca1	140	Nuclear protein SNF4 {Baker's yeast (Saccharomyces	99.38
d2ooxe1	179	Uncharacterized protein C1556.08c {Schizosaccharom	99.37
d1jr1a4	120	Type II inosine monophosphate dehydrogenase CBS do	99.32
d2ouxa2	127	Magnesium transporter MgtE {Enterococcus faecalis	99.16
d2ef7a1	127	Uncharacterized protein ST2348 {Sulfolobus tokodai	98.97
d3ddja2	135	Uncharacterized protein SSO3205 {Sulfolobus solfat	98.97
d2yvxa2	144	Magnesium transporter MgtE {Thermus thermophilus [	98.97
d3ddja1	141	Uncharacterized protein SSO3205 {Sulfolobus solfat	98.96
d2yzqa2	122	Uncharacterized protein PH1780 {Pyrococcus horikos	98.93
d2yzqa1	156	Uncharacterized protein PH1780 {Pyrococcus horikos	98.89
d2rc3a1	127	Uncharacterized protein NE2398 {Nitrosomonas europ	98.89
d1o50a3	145	Hypothetical protein TM0935 {Thermotoga maritima [	98.89
d1vr9a3	121	Hypothetical protein TM0892, CBS tandem {Thermotog	98.88
d1y5ha3	123	Hypothetical protein Rv2626c {Mycobacterium tuberc	98.88
d1pbja3	120	Hypothetical protein MTH1622 {Archaeon Methanobact	98.87
d1pvma4	142	Hypothetical protein Ta0289 {Archaeon Thermoplasma	98.87
d2o16a3	139	Hypothetical protein VC0737 {Vibrio cholerae [TaxI	98.85
d1zfja4	126	Type II inosine monophosphate dehydrogenase CBS do	98.84
d2ooxe2	153	Uncharacterized protein C1556.08c {Schizosaccharom	98.78
d2yzia1	132	Uncharacterized protein PH0107 {Pyrococcus horikos	98.77
d2v8qe1	145	5'-AMP-activated protein kinase subunit gamma-1, A	98.74
d1yava3	132	Hypothetical protein YkuL {Bacillus subtilis [TaxI	98.73
d1jr1a4	120	Type II inosine monophosphate dehydrogenase CBS do	98.73
d2j9la1	169	Chloride channel protein 5, ClC-5 {Human (Homo sap	98.7
d2nyca1	140	Nuclear protein SNF4 {Baker's yeast (Saccharomyces	98.69
d2d4za3	160	Chloride channel protein, CBS tandem {Marbled elec	98.69
d2riha1	131	Uncharacterized protein PAE2072 {Pyrobaculum aerop	98.63
d2v8qe2	159	5'-AMP-activated protein kinase subunit gamma-1, A	98.62
d2ooxe1	179	Uncharacterized protein C1556.08c {Schizosaccharom	98.37

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.72  E-value=5.1e-18  Score=113.34  Aligned_cols=99  Identities=23%  Similarity=0.452  Sum_probs=87.9

Q ss_pred             ccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCccccccc
Q 031190           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGD  133 (164)
Q Consensus        54 ~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~v~~  133 (164)
                      .+++|+|.+       +++++.+++++.+|++.|.+++++++||+  |++|+++|+||.+|++.++...+.......+++
T Consensus         1 tt~~diM~~-------~~~~v~~~~tl~~a~~~m~~~~~~~~pVv--d~~~~~~Giit~~Di~~~~~~~~~~~~~~~v~~   71 (123)
T d1y5ha3           1 TTARDIMNA-------GVTCVGEHETLTAAAQYMREHDIGALPIC--GDDDRLHGMLTDRDIVIKGLAAGLDPNTATAGE   71 (123)
T ss_dssp             CCHHHHSEE-------TCCCEETTSBHHHHHHHHHHHTCSEEEEE--CGGGBEEEEEEHHHHHHTTGGGTCCTTTSBHHH
T ss_pred             CCHHHhcCC-------CCcEECCcCcHHHHHHHHHHcCCCceEEE--eccchhhhhhhhhhHhhhhhhcCCCcccceEEE
Confidence            378999987       69999999999999999999999999999  788999999999999876665554445677899


Q ss_pred             ccccCCCeEEEcCCCCHHHHHHHHHhCCCC
Q 031190          134 IMTEENKLITVSPDTKVLRAMQLMTGHMLL  163 (164)
Q Consensus       134 vm~~~~~~~~v~~~~~l~e~~~~m~~~~~~  163 (164)
                      +|++  ++.++++++++.+|+++|.+++++
T Consensus        72 im~~--~~~~v~~~~~~~~~~~~m~~~~~~   99 (123)
T d1y5ha3          72 LARD--SIYYVDANASIQEMLNVMEEHQVR   99 (123)
T ss_dssp             HHTT--CCCCEETTCCHHHHHHHHHHHTCS
T ss_pred             Eeec--cceeeeecchHHHHHHHHHHcCce
Confidence            9998  589999999999999999988763

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.71  E-value=2.9e-17  Score=112.25  Aligned_cols=99  Identities=20%  Similarity=0.351  Sum_probs=89.3

Q ss_pred             ccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCccccccc
Q 031190           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGD  133 (164)
Q Consensus        54 ~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~v~~  133 (164)
                      ++|+++|.+       ++.++++++++.+|++.|.+++++++||+  |++|+++|+||.+|+++++...+......++++
T Consensus         3 m~v~dim~~-------~~~~v~~~~tl~~a~~~m~~~~~~~~~V~--d~~~~~~Giit~~di~~~~~~~~~~~~~~~v~~   73 (142)
T d1pvma4           3 MRVEKIMNS-------NFKTVNWNTTVFDAVKIMNENHLYGLVVK--DDNGNDVGLLSERSIIKRFIPRNKKPDEVPIRL   73 (142)
T ss_dssp             CBGGGTSBT-------TCCEEETTCBHHHHHHHHHHHTCCEEEEE--CTTSCEEEEEEHHHHHHHTGGGCCCGGGSBGGG
T ss_pred             EEHHHhCCC-------CCcEECCcCcHHHHHHHHHHCCCceEeee--ccCCcccceEEeechhhhhhhhccccccccccc
Confidence            589999988       69999999999999999999999999999  788999999999999887766555556778999


Q ss_pred             ccccCCCeEEEcCCCCHHHHHHHHHhCCCC
Q 031190          134 IMTEENKLITVSPDTKVLRAMQLMTGHMLL  163 (164)
Q Consensus       134 vm~~~~~~~~v~~~~~l~e~~~~m~~~~~~  163 (164)
                      +|++  +++++++++++.+++++|.+++++
T Consensus        74 im~~--~~~~v~~~~~l~~~~~~m~~~~~~  101 (142)
T d1pvma4          74 VMRK--PIPKVKSDYDVKDVAAYLSENGLE  101 (142)
T ss_dssp             TSBS--SCCEEETTCBHHHHHHHHHHHTCS
T ss_pred             cccc--ccccccchhhHHHHHHHHHHcCCc
Confidence            9998  599999999999999999888763

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

Probab=99.71  E-value=3.6e-17  Score=109.77  Aligned_cols=100  Identities=32%  Similarity=0.516  Sum_probs=87.7

Q ss_pred             cHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCcccccccc
Q 031190           55 TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDI  134 (164)
Q Consensus        55 ~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~v~~v  134 (164)
                      +|+++|..+.+    +++++.+++|+.+|+++|.+++++++||+  + +++++|+||.+|+++++...+....+.+++++
T Consensus         3 tV~dim~~k~~----~v~~i~~~~tl~~a~~~m~~~~~~~vpV~--~-~~~~vGiit~~Di~~~~~~~~~~~~~~~v~~i   75 (127)
T d2rc3a1           3 TVKHLLQEKGH----TVVAIGPDDSVFNAMQKMAADNIGALLVM--K-DEKLVGILTERDFSRKSYLLDKPVKDTQVKEI   75 (127)
T ss_dssp             BHHHHHHHHCC----CCCEECTTSBHHHHHHHHHHHTCSEEEEE--E-TTEEEEEEEHHHHHHHGGGSSSCGGGSBGGGT
T ss_pred             cHHHHHccCCC----ccEEECCcCcHHHHHHHHHHcCCCEEEEE--E-CCeEEEEEEccchhhhhhhhcccccceeEeee
Confidence            79999987543    69999999999999999999999999999  4 68999999999998876655545557789999


Q ss_pred             cccCCCeEEEcCCCCHHHHHHHHHhCCCC
Q 031190          135 MTEENKLITVSPDTKVLRAMQLMTGHMLL  163 (164)
Q Consensus       135 m~~~~~~~~v~~~~~l~e~~~~m~~~~~~  163 (164)
                      |++  ++.++.+++++.+|+++|.+++++
T Consensus        76 m~~--~~~~v~~~~~l~~a~~~m~~~~~~  102 (127)
T d2rc3a1          76 MTR--QVAYVDLNNTNEDCMALITEMRVR  102 (127)
T ss_dssp             SBC--SCCCBCTTCBHHHHHHHHHHHTCS
T ss_pred             ccc--eeEEeccCccHHHHHHHHHHCCCc
Confidence            999  599999999999999999988763

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

Probab=99.68  E-value=1e-16  Score=109.09  Aligned_cols=99  Identities=18%  Similarity=0.226  Sum_probs=85.9

Q ss_pred             ccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcC-------CCC
Q 031190           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQG-------RSS  126 (164)
Q Consensus        54 ~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~-------~~~  126 (164)
                      ++|+|+|++       ++.++.+++++.+|++.|.+++++++||+  |++|+++|+||.+|+++......       ...
T Consensus         2 i~v~diM~~-------~~~~v~~~~tl~~a~~~m~~~~~~~lpVv--d~~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~   72 (139)
T d2o16a3           2 IKVEDMMTR-------HPHTLLRTHTLNDAKHLMEALDIRHVPIV--DANKKLLGIVSQRDLLAAQESSLQRSAQGDSLA   72 (139)
T ss_dssp             CBGGGTSEE-------SCCCBCTTSBHHHHHHHHHHHTCSEEEEE--CTTCBEEEEEEHHHHHHHHHHHCC---------
T ss_pred             EEHHHhCcC-------CCeEECCcCCHHHHHHHHHHcCCCeeeee--cccccccccccHHHHHHHHHhhhhhhhcccccc
Confidence            578999987       69999999999999999999999999999  88899999999999987665431       123


Q ss_pred             cccccccccccCCCeEEEcCCCCHHHHHHHHHhCCCC
Q 031190          127 KSTKVGDIMTEENKLITVSPDTKVLRAMQLMTGHMLL  163 (164)
Q Consensus       127 ~~~~v~~vm~~~~~~~~v~~~~~l~e~~~~m~~~~~~  163 (164)
                      ...++.++|++  ++.++++++++.+|+++|.+++++
T Consensus        73 ~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~  107 (139)
T d2o16a3          73 FETPLFEVMHT--DVTSVAPQAGLKESAIYMQKHKIG  107 (139)
T ss_dssp             CCCBHHHHSCS--CEEEBCTTSBHHHHHHHHHHTTCS
T ss_pred             cccchhHhhcc--ccccccccchHHHHHHHHHHcCce
Confidence            45689999999  599999999999999999998763

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.67  E-value=1.4e-16  Score=107.47  Aligned_cols=98  Identities=29%  Similarity=0.435  Sum_probs=87.1

Q ss_pred             ccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCccccccc
Q 031190           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGD  133 (164)
Q Consensus        54 ~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~v~~  133 (164)
                      .+|+++|.+       ++.++++++|+.+|++.|.+++++++||+  |++|+++|+||.+|+++.+..++ .....++++
T Consensus         5 ~pV~~im~~-------~~~~v~~~~t~~~a~~~m~~~~~~~~~Vv--d~~~~~~Giit~~di~~~~~~~~-~~~~~~v~~   74 (132)
T d2yzia1           5 APIKVYMTK-------KLLGVKPSTSVQEASRLMMEFDVGSLVVI--NDDGNVVGFFTKSDIIRRVIVPG-LPYDIPVER   74 (132)
T ss_dssp             SBGGGTCBC-------CCCEECTTSBHHHHHHHHHHHTCSEEEEE--CTTSCEEEEEEHHHHHHHTTTTC-CCTTSBGGG
T ss_pred             CcHHHHcCC-------CCeEECCcCcHHHHHHHHHHcCCcEEEEe--cccceeeeeeeHHHHHHHHhhcc-CccceeEee
Confidence            478999987       69999999999999999999999999999  88899999999999987665443 345679999


Q ss_pred             ccccCCCeEEEcCCCCHHHHHHHHHhCCCC
Q 031190          134 IMTEENKLITVSPDTKVLRAMQLMTGHMLL  163 (164)
Q Consensus       134 vm~~~~~~~~v~~~~~l~e~~~~m~~~~~~  163 (164)
                      +|.+  ++.++++++++.++++.|.+++++
T Consensus        75 im~~--~~~~v~~~~~~~~~~~~m~~~~~~  102 (132)
T d2yzia1          75 IMTR--NLITANVNTPLGEVLRKMAEHRIK  102 (132)
T ss_dssp             TCBC--SCCEEETTSBHHHHHHHHHHHTCS
T ss_pred             cccc--cccccCcchHHHHHHHHHHHcCCC
Confidence            9999  599999999999999999988763

>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein YkuL
species: Bacillus subtilis [TaxId: 1423]

Probab=99.66  E-value=5.4e-17  Score=109.46  Aligned_cols=100  Identities=11%  Similarity=0.201  Sum_probs=85.6

Q ss_pred             ccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCC----CCccc
Q 031190           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGR----SSKST  129 (164)
Q Consensus        54 ~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~----~~~~~  129 (164)
                      .+|+++|.+.+     .+.++.+++++.+|+++|.+++++++||+  |++|+++|++|.+|+++.+.....    .....
T Consensus         2 ~tv~~~mip~~-----~v~~v~~~~tl~~a~~~m~~~~~s~~pVv--d~~~~~vGiit~~di~~~~~~~~~~~~~~~~~~   74 (132)
T d1yava3           2 ATVGQFMIEAD-----KVAHVQVGNNLEHALLVLTKTGYTAIPVL--DPSYRLHGLIGTNMIMNSIFGLERIEFEKLDQI   74 (132)
T ss_dssp             CBHHHHSEEGG-----GSCCEETTCBHHHHHHHHHHHCCSEEEEE--CTTCBEEEEEEHHHHHHHHBCSSSBCGGGTTTS
T ss_pred             CCHHHcccccc-----ceEEEcCCCCHHHHHHHHHhhCCCceEEe--ecccccccEEEcchhHHHhhccccccccccccc
Confidence            58999997755     39999999999999999999999999999  788999999999999887653211    12356


Q ss_pred             ccccccccCCCeEEEcCCCCHHHHHHHHHhCCC
Q 031190          130 KVGDIMTEENKLITVSPDTKVLRAMQLMTGHML  162 (164)
Q Consensus       130 ~v~~vm~~~~~~~~v~~~~~l~e~~~~m~~~~~  162 (164)
                      ++.++|++  +++++++++++.+++.+|.++++
T Consensus        75 ~v~~~m~~--~~~~v~~~~~l~~~~~~~~~~~~  105 (132)
T d1yava3          75 TVEEVMLT--DIPRLHINDPIMKGFGMVINNGF  105 (132)
T ss_dssp             BHHHHSBC--SCCEEETTSBHHHHHHHTTTCSE
T ss_pred             cccccccc--cccccccchhHHHHHHHHHhCCE
Confidence            88999998  59999999999999999987754

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.65  E-value=3.5e-16  Score=103.84  Aligned_cols=96  Identities=22%  Similarity=0.319  Sum_probs=84.7

Q ss_pred             cHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCcccccccc
Q 031190           55 TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDI  134 (164)
Q Consensus        55 ~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~v~~v  134 (164)
                      +|+|+|++       ++.++++++|+.+|++.|.+++++++||+  + +|+++|+||.+|+++.+... ....+.++.++
T Consensus         1 kV~diM~~-------~~~~v~~~~sl~ea~~~~~~~~~~~~~V~--~-~~~~~Gvit~~Di~~~l~~~-~~~~~~~v~~~   69 (120)
T d1pbja3           1 RVEDVMVT-------DVDTIDITASLEDVLRNYVENAKGSSVVV--K-EGVRVGIVTTWDVLEAIAEG-DDLAEVKVWEV   69 (120)
T ss_dssp             CHHHHCBC-------SCCEEETTCBHHHHHHHHHHHCCCEEEEE--E-TTEEEEEEEHHHHHHHHHHT-CCTTTSBHHHH
T ss_pred             ChHHhCCC-------CCeEECCcCcHHHHHHHHHHcCceEEEEE--e-CCcEEEEEEeeecccccccc-ccccceeEeee
Confidence            47899998       69999999999999999999999999999  4 48999999999998776644 34457799999


Q ss_pred             cccCCCeEEEcCCCCHHHHHHHHHhCCCC
Q 031190          135 MTEENKLITVSPDTKVLRAMQLMTGHMLL  163 (164)
Q Consensus       135 m~~~~~~~~v~~~~~l~e~~~~m~~~~~~  163 (164)
                      |++  +++++++++++.+|+..|.+++++
T Consensus        70 m~~--~~~~v~~~~~l~~a~~~m~~~~~~   96 (120)
T d1pbja3          70 MER--DLVTISPRATIKEAAEKMVKNVVW   96 (120)
T ss_dssp             CBC--GGGEECTTSCHHHHHHHHHHHTCS
T ss_pred             ccc--ccccccchhHHHHHHHHHHHcCCe
Confidence            999  599999999999999999988763

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.61  E-value=2.3e-16  Score=105.03  Aligned_cols=91  Identities=16%  Similarity=0.205  Sum_probs=64.7

Q ss_pred             ccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCccccccc
Q 031190           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGD  133 (164)
Q Consensus        54 ~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~v~~  133 (164)
                      ++++++|++       +++++.+++++.+|+++|.+++++++||+  |++|+++|+||.+|++..       ....++.+
T Consensus         1 m~v~diM~~-------~~v~v~~~~~v~~a~~~m~~~~~~~~~Vv--d~~~~~~G~it~~dl~~~-------~~~~~~~~   64 (122)
T d2yzqa2           1 MRVKTIMTQ-------NPVTITLPATRNYALELFKKYKVRSFPVV--NKEGKLVGIISVKRILVN-------PDEEQLAM   64 (122)
T ss_dssp             CBHHHHSEE-------SCCCEESSCC------------CCEEEEE--CTTCCEEEEEESSCC-----------------C
T ss_pred             CCcccccCC-------CCEEECCcCcHHHHHHHHHHcCCcEEEEE--eccccchhhhhcchhhhh-------hcccchhh
Confidence            579999988       69999999999999999999999999999  889999999999999752       24568899


Q ss_pred             ccccCCCeEEEcCCCCHHHHHHHHHhCCC
Q 031190          134 IMTEENKLITVSPDTKVLRAMQLMTGHML  162 (164)
Q Consensus       134 vm~~~~~~~~v~~~~~l~e~~~~m~~~~~  162 (164)
                      +|.+  +++++++++++.+++.+|.++++
T Consensus        65 ~~~~--~~~~v~~~~~l~~~~~~~~~~~~   91 (122)
T d2yzqa2          65 LVKR--DVPVVKENDTLKKAAKLMLEYDY   91 (122)
T ss_dssp             CCBS--CCCEEETTSBHHHHHHHHHHHTC
T ss_pred             cccc--ceeecchhhHHHHHHHHHHHcCc
Confidence            9999  59999999999999999998876

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.61  E-value=1.6e-15  Score=101.43  Aligned_cols=98  Identities=34%  Similarity=0.487  Sum_probs=85.6

Q ss_pred             ccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCccccc
Q 031190           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKV  131 (164)
Q Consensus        52 ~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~v  131 (164)
                      .+..|+++|++       +++++.+++++.+|+++|.+++++++||+  + +|+++|+|+.+|+++.+.. + ...+.++
T Consensus         2 ~~~~V~d~m~~-------~~v~v~~~~tl~~a~~~m~~~~~~~~pV~--d-~~~~~Givt~~dl~~~~~~-~-~~~~~~v   69 (127)
T d2ef7a1           2 EEEIVKEYMKT-------QVISVTKDAKLNDIAKVMTEKNIGSVIVV--D-GNKPVGIITERDIVKAIGK-G-KSLETKA   69 (127)
T ss_dssp             CCCBGGGTSBC-------SCCEEETTCBHHHHHHHHHHHTCSEEEEE--E-TTEEEEEEEHHHHHHHHHT-T-CCTTCBG
T ss_pred             CccCHHHhCCC-------CCeEECCcCcHHHHHHHHHHcCCceEEee--c-ccchhhhcchhHHHHHHHh-h-ccccchh
Confidence            45689999988       69999999999999999999999999999  4 4789999999999776653 3 2356789


Q ss_pred             ccccccCCCeEEEcCCCCHHHHHHHHHhCCCC
Q 031190          132 GDIMTEENKLITVSPDTKVLRAMQLMTGHMLL  163 (164)
Q Consensus       132 ~~vm~~~~~~~~v~~~~~l~e~~~~m~~~~~~  163 (164)
                      .++|.+  ++.++++++++.++++.|.+++++
T Consensus        70 ~~~~~~--~~~~v~~~~~l~~~~~~m~~~~~~   99 (127)
T d2ef7a1          70 EEFMTA--SLITIREDSPITGALALMRQFNIR   99 (127)
T ss_dssp             GGTSEE--CCCCEETTSBHHHHHHHHHHHTCS
T ss_pred             hhhhhh--hccccccccchhHHHHHHHHcCce
Confidence            999998  599999999999999999988763

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

Probab=99.60  E-value=1.6e-15  Score=100.71  Aligned_cols=92  Identities=14%  Similarity=0.194  Sum_probs=82.9

Q ss_pred             ccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCccccccc
Q 031190           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGD  133 (164)
Q Consensus        54 ~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~v~~  133 (164)
                      ++|+++|.+       +++++++++|+.+|++.|.+++++++||+  |++|+++|+|+.+|+++       ...+.++.+
T Consensus         1 m~v~~~m~~-------~~~~v~~~~tv~ea~~~m~~~~~~~v~Vv--d~~~~~~Gii~~~dl~~-------~~~~~~v~~   64 (121)
T d1vr9a3           1 MKVKKWVTQ-------DFPMVEESATVRECLHRMRQYQTNECIVK--DREGHFRGVVNKEDLLD-------LDLDSSVFN   64 (121)
T ss_dssp             CBGGGGCBS-------CSCEEETTCBHHHHHHHHHHTTSSEEEEE--CTTSBEEEEEEGGGGTT-------SCTTSBSGG
T ss_pred             CCchhhhcC-------CCeEECCCCCHHHHHHhhhhcCcEEEEEE--eCCceeEEEeehhhhhh-------hhccccccc
Confidence            578899988       69999999999999999999999999999  88899999999999954       234678999


Q ss_pred             ccccCCCeEEEcCCCCHHHHHHHHHhCCCC
Q 031190          134 IMTEENKLITVSPDTKVLRAMQLMTGHMLL  163 (164)
Q Consensus       134 vm~~~~~~~~v~~~~~l~e~~~~m~~~~~~  163 (164)
                      +|..  +++++++++++.+++++|.++++.
T Consensus        65 ~~~~--~~~~v~~~~~l~~~~~~~~~~~~~   92 (121)
T d1vr9a3          65 KVSL--PDFFVHEEDNITHALLLFLEHQEP   92 (121)
T ss_dssp             GCBC--TTCCEETTSBHHHHHHHHHHCCCS
T ss_pred             cccC--ccEEECCCCCHHHHHHHHHhcCce
Confidence            9999  588999999999999999998763

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.58  E-value=3.2e-15  Score=100.12  Aligned_cols=91  Identities=21%  Similarity=0.333  Sum_probs=81.5

Q ss_pred             cHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcC-----CCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCccc
Q 031190           55 TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHN-----VGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKST  129 (164)
Q Consensus        55 ~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~-----~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~  129 (164)
                      +++.+|.+       +++++++++|+.+|++.|++++     ++.+||+  |++|+++|+++.++++.       .....
T Consensus         2 taG~iM~~-------d~i~v~~~~tv~ea~~~m~~~~~~~~~~~~~~Vv--d~~~~l~G~v~~~~l~~-------~~~~~   65 (127)
T d2ouxa2           2 TAGAIMTT-------EFVSIVANQTVRSAMYVLKNQADMAETIYYVYVV--DQENHLVGVISLRDLIV-------NDDDT   65 (127)
T ss_dssp             BHHHHCBS-------CCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEE--CTTCBEEEEEEHHHHTT-------SCTTS
T ss_pred             ChhHhCCC-------CcEEECCCCcHHHHHHHhHhhcccccceeeeEEE--ecCCeEEEEEEeecccc-------ccccE
Confidence            78999998       6999999999999999998874     6899999  88999999999999854       23568


Q ss_pred             ccccccccCCCeEEEcCCCCHHHHHHHHHhCCCC
Q 031190          130 KVGDIMTEENKLITVSPDTKVLRAMQLMTGHMLL  163 (164)
Q Consensus       130 ~v~~vm~~~~~~~~v~~~~~l~e~~~~m~~~~~~  163 (164)
                      ++.++|++  +++++++++++.+|+++|.+++++
T Consensus        66 ~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~   97 (127)
T d2ouxa2          66 LIADILNE--RVISVHVGDDQEDVAQTIRDYDFL   97 (127)
T ss_dssp             BHHHHSBS--CCCCEETTSBHHHHHHHHHHHTCS
T ss_pred             EhhhhccC--CCccCCCCCCHHHHHHHHHHhCCE
Confidence            99999999  599999999999999999998874

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.56  E-value=2.9e-15  Score=103.23  Aligned_cols=102  Identities=22%  Similarity=0.245  Sum_probs=85.1

Q ss_pred             cccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcC-------
Q 031190           51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQG-------  123 (164)
Q Consensus        51 ~~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~-------  123 (164)
                      |++.++.++|..       +++++.+++++.+|+++|.+++++++||+  |++|+++|+||..|+++.+....       
T Consensus         1 ~~~~~v~~~m~r-------~v~~v~~~~~l~~a~~~m~~~~~~~lPVv--d~~~~lvG~it~~Dl~~~~~~~~~~~~~~~   71 (156)
T d2yzqa1           1 YKGVEIEPYYQR-------YVSIVWEGTPLKAALKALLLSNSMALPVV--DSEGNLVGIVDETDLLRDSEIVRIMKSTEL   71 (156)
T ss_dssp             GGGCBSTTTSBS-------CCCCEETTSBHHHHHHHHHTCSSSEEEEE--CTTSCEEEEEEGGGGGGCGGGCC-------
T ss_pred             CCCCCHHHHhcC-------CCeEECCcCcHHHHHHHHHHcCCCEEEEE--eCCCCceeEEeeeechhhhccccccccccc
Confidence            467889999987       79999999999999999999999999999  88999999999999854221110       


Q ss_pred             ----------------------CCCcccccccccccCCCeEEEcCCCCHHHHHHHHHhCCCC
Q 031190          124 ----------------------RSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTGHMLL  163 (164)
Q Consensus       124 ----------------------~~~~~~~v~~vm~~~~~~~~v~~~~~l~e~~~~m~~~~~~  163 (164)
                                            ......++.++|++  ++.++++++++.++++.|.+++++
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~--~~~tv~~~~~l~~~~~~m~~~~~~  131 (156)
T d2yzqa1          72 AASSEEEWILESHPTLLFEKFELQLPNKPVAEIMTR--DVIVATPHMTVHEVALKMAKYSIE  131 (156)
T ss_dssp             -------------------------CCCBGGGTCBS--SCCCBCTTSBHHHHHHHHHHHTCS
T ss_pred             ccchhhhhhhhhhhhhhHHHhhhcccCCEeehhccc--CceEECcccccHHHHHHHHHcCee
Confidence                                  11234588999999  599999999999999999988763

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.53  E-value=8.1e-15  Score=99.34  Aligned_cols=99  Identities=19%  Similarity=0.181  Sum_probs=85.7

Q ss_pred             ccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcC-----CCCcc
Q 031190           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQG-----RSSKS  128 (164)
Q Consensus        54 ~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~-----~~~~~  128 (164)
                      .+|+++|++       ++.++++++|+.+|+++|.+++++.+||+  |++++++|+++..|+++.+....     .....
T Consensus         2 ~~V~~iMt~-------~v~~v~~~~tl~~a~~~m~~~~~~~ipVv--~~~~~~~g~i~~~di~~~~~~~~~~~~~~~~~~   72 (141)
T d3ddja1           2 FPVKVFMST-------KVQTIYKEVRLDQAVKLMLRRGFRRLPVI--DDDNKVVGIVTVVNAIKQLAKAVDKLDPDYFYG   72 (141)
T ss_dssp             CBHHHHSBC-------SCCCEETTSBHHHHHHHHHHHTCSEEEEE--CTTSCEEEEEEHHHHHHHHHHHHHHTCTHHHHT
T ss_pred             EeeHHhCcC-------CCeEEcCcCcHHHHHHHHHHcCCCeeecc--cccCccccccccccchhhhhccccccccccccC
Confidence            479999998       59999999999999999999999999999  78899999999999977654321     01235


Q ss_pred             cccccccccCCCeEEEcCCCCHHHHHHHHHhCCCC
Q 031190          129 TKVGDIMTEENKLITVSPDTKVLRAMQLMTGHMLL  163 (164)
Q Consensus       129 ~~v~~vm~~~~~~~~v~~~~~l~e~~~~m~~~~~~  163 (164)
                      .+++++|++  +++++++++++.++++.|.+++++
T Consensus        73 ~~v~~im~~--~~~~v~~~~~~~~~~~~m~~~~~~  105 (141)
T d3ddja1          73 KVVKDVMVT--NLVTIDELASVNRAAAEMIVKRIG  105 (141)
T ss_dssp             CBHHHHSBC--CCCBCCTTSBHHHHHHHHHHHTCS
T ss_pred             CCHHHHhCc--ccccccccchhhHHHHHHHHcCCC
Confidence            689999998  599999999999999999988763

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

Probab=99.51  E-value=4.3e-15  Score=101.53  Aligned_cols=91  Identities=20%  Similarity=0.321  Sum_probs=81.1

Q ss_pred             cHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcC-----CCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCccc
Q 031190           55 TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHN-----VGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKST  129 (164)
Q Consensus        55 ~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~-----~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~  129 (164)
                      +++++|++       +++++++++|+.+|++.|++++     ++.+||+  |++|+++|+|+.+|++.       .....
T Consensus         2 taG~iM~~-------~~itv~~~~tv~ea~~~m~~~~~~~~~~~~~~Vv--d~~~~l~G~v~~~dl~~-------~~~~~   65 (144)
T d2yvxa2           2 EAGGLMTP-------EYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVV--DEKGRLKGVLSLRDLIV-------ADPRT   65 (144)
T ss_dssp             SSGGGCBS-------CCCEECSSCBHHHHHHHSSSSCTTSSCSSBCEEB--CTTCBBCCBCBHHHHTT-------SCTTC
T ss_pred             CcccccCC-------CCEEECCCCcHHHHHHHHHHhcccccceeeeEEe--cCCCCEecccchhhhhh-------ccccc
Confidence            68899998       6999999999999999998774     7889999  88999999999999854       23467


Q ss_pred             ccccccccCCCeEEEcCCCCHHHHHHHHHhCCCC
Q 031190          130 KVGDIMTEENKLITVSPDTKVLRAMQLMTGHMLL  163 (164)
Q Consensus       130 ~v~~vm~~~~~~~~v~~~~~l~e~~~~m~~~~~~  163 (164)
                      ++.++|++  +++++++++++.+|+++|.++++.
T Consensus        66 ~v~~im~~--~~~~v~~~~~~~~a~~~m~~~~~~   97 (144)
T d2yvxa2          66 RVAEIMNP--KVVYVRTDTDQEEVARLMADYDFT   97 (144)
T ss_dssp             BSTTTSBS--SCCCEESSCCHHHHHHHHHHSCCS
T ss_pred             chHHhccc--CCccCCCCChHHHHHHHHHHcCCC
Confidence            89999999  599999999999999999999863

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.47  E-value=1.2e-13  Score=92.38  Aligned_cols=98  Identities=20%  Similarity=0.234  Sum_probs=79.1

Q ss_pred             ccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCccccccc
Q 031190           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGD  133 (164)
Q Consensus        54 ~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~v~~  133 (164)
                      ++|+|+|.+       +++++++++|+.+|++.|.+++++++||++.|.+++++|+++..|+++.+....  ........
T Consensus         1 ~~V~dim~~-------~~v~v~~~~tl~ea~~~m~~~~~~~~~Vv~~d~~~~~iGi~~~~dl~~~~~~~~--~~~~~~~~   71 (131)
T d2riha1           1 IRTSELLKR-------PPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQRL--DLDGPAMP   71 (131)
T ss_dssp             CBGGGGCCS-------CCEEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEEEEHHHHHHHHHTTC--CTTSBSGG
T ss_pred             CCHHHhccC-------CCEEECCCCcHHHHHHHHHHhCCCcEEEEEEcCCCEEEEEEeeecccccccccc--cccccccc
Confidence            478999987       699999999999999999999999999995334688999999999977654322  12333344


Q ss_pred             ccccCCCeEEEcCCCCHHHHHHHHHhCCCC
Q 031190          134 IMTEENKLITVSPDTKVLRAMQLMTGHMLL  163 (164)
Q Consensus       134 vm~~~~~~~~v~~~~~l~e~~~~m~~~~~~  163 (164)
                       +..  .++++.+++++.+++++|.+++++
T Consensus        72 -~~~--~~~~v~~~~~~~~a~~~m~~~~i~   98 (131)
T d2riha1          72 -IAN--SPITVLDTDPVHVAAEKMRRHNIR   98 (131)
T ss_dssp             -GCB--CCCEEETTSBHHHHHHHHHHHTCS
T ss_pred             -ccc--cceeEeeecchHHHHHHHHHCCeE
Confidence             444  378999999999999999998874

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.46  E-value=1.7e-13  Score=91.29  Aligned_cols=84  Identities=20%  Similarity=0.308  Sum_probs=69.6

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEEEEecCC--CCcEEEEEehHHHHHHHHHcCCCCccccc-ccccccCCCeEEEcC
Q 031190           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGE--QKSVAGIITERDYLRKIIVQGRSSKSTKV-GDIMTEENKLITVSP  146 (164)
Q Consensus        70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~--~~~~vGivt~~dil~~~~~~~~~~~~~~v-~~vm~~~~~~~~v~~  146 (164)
                      +++++++++|+.+|+++|.+++++++||+  |+  +++++|+||.+|++...      ....+. ..+|..  +++++++
T Consensus         6 dpvtv~~~~tv~~a~~~m~~~~~~~~pVv--D~~~~~~lvGivt~~Di~~~~------~~~~~~~~~~~~~--~~~~~~~   75 (126)
T d1zfja4           6 DPFFLTPEHKVSEAEELMQRYRISGVPIV--ETLANRKLVGIITNRDMRFIS------DYNAPISEHMTSE--HLVTAAV   75 (126)
T ss_dssp             SCCCBCSSSBHHHHHHHHHHTTCSEEEEE--SCTTTCBEEEEEEHHHHHHCS------CSSSBTTTSCCCS--CCCCEET
T ss_pred             CceEECCCCCHHHHHHHHHHhCCCcEEEE--eeccCCeEEEEeEHHHHHHhh------ccCCceeeeeecc--ceeecCC
Confidence            58999999999999999999999999999  54  68999999999996521      123344 444455  5889999


Q ss_pred             CCCHHHHHHHHHhCCCC
Q 031190          147 DTKVLRAMQLMTGHMLL  163 (164)
Q Consensus       147 ~~~l~e~~~~m~~~~~~  163 (164)
                      ++++.+|+++|.+++++
T Consensus        76 ~~~l~~a~~~m~~~~~~   92 (126)
T d1zfja4          76 GTDLETAERILHEHRIE   92 (126)
T ss_dssp             TCCHHHHHHHHHHTTCS
T ss_pred             CCCHHHHHHHHHhcCCc
Confidence            99999999999998863

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=3.9e-13  Score=93.71  Aligned_cols=105  Identities=18%  Similarity=0.215  Sum_probs=81.2

Q ss_pred             cccHHHHhhhcCCCCCCCc--eEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcC-------
Q 031190           53 STTISDILKAKGKGADGSW--LWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQG-------  123 (164)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~--~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~-------  123 (164)
                      ...++|+|.++.+-   ++  +.+.+++|+.+|+++|.+++++++||+..+++++++|+||.+|++..+....       
T Consensus         2 ~~~a~DiM~p~~~~---~~~~v~~~~~~tv~~a~~ll~~~~~~~~PVV~~~~~~~lvG~is~~dl~~~l~~~~~~~~~~~   78 (169)
T d2j9la1           2 KTLAMDVMKPRRND---PLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIENARKKQDGVV   78 (169)
T ss_dssp             CCBHHHHSBSCTTS---CCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHTSCSCCC
T ss_pred             ccchhhhcCcCCCC---CceEEECCCcCCHHHHHHHHHHcCCCceeeeecCCCCeEEEEEEhHHHHHHHhcccccccccc
Confidence            35688999874220   12  4456788999999999999999999994234678999999999987664220       


Q ss_pred             ----------------CCCcccccccccccCCCeEEEcCCCCHHHHHHHHHhCCC
Q 031190          124 ----------------RSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTGHML  162 (164)
Q Consensus       124 ----------------~~~~~~~v~~vm~~~~~~~~v~~~~~l~e~~~~m~~~~~  162 (164)
                                      ......+++++|.+  ++.++.+++++.+++++|.+++.
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~v~~im~~--~~~tv~~~~~l~~v~~~~~~~~~  131 (169)
T d2j9la1          79 STSIIYFTEHSPPLPPYTPPTLKLRNILDL--SPFTVTDLTPMEIVVDIFRKLGL  131 (169)
T ss_dssp             TTCEEECSSSCCCCCTTCCCCEECGGGEES--SCCEEETTSBHHHHHHHHHHHTC
T ss_pred             cchhhhhcccchhhhhccccccchhhhccC--CCEEECCCCcHHHHHHHHHhcCc
Confidence                            01123468999999  59999999999999999988765

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.45  E-value=1.7e-13  Score=94.18  Aligned_cols=92  Identities=14%  Similarity=0.241  Sum_probs=76.3

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCcccccccccccC----CCeEEEc
Q 031190           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEE----NKLITVS  145 (164)
Q Consensus        70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~v~~vm~~~----~~~~~v~  145 (164)
                      +++++.+++++.+|+++|.+++++++||+  |++|+++|+|+.+|+++.+..........++.++|...    .++.+++
T Consensus        13 ~vv~v~~~~~v~~a~~~m~~~~~~~lpVv--d~~~~~vG~it~~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~   90 (153)
T d2ooxe2          13 NLATASMETKVYDVIKMLAEKNISAVPIV--NSEGTLLNVYESVDVMHLIQDGDYSNLDLSVGEALLKRPANFDGVHTCR   90 (153)
T ss_dssp             SCCCBCTTSBHHHHHHHHHHTTCSEEEEE--CGGGBEEEEEEHHHHHHHHGGGCGGGGGSBHHHHHHTSCCCSSCCCEEC
T ss_pred             CCeEEeCcCcHHHHHHHHHHcCcceEeee--cccceEEEEEEeeeeeehhccccccccccchhhheeeeecccCCCeEEC
Confidence            59999999999999999999999999999  78899999999999977665433333455677776432    1467899


Q ss_pred             CCCCHHHHHHHHHhCCCC
Q 031190          146 PDTKVLRAMQLMTGHMLL  163 (164)
Q Consensus       146 ~~~~l~e~~~~m~~~~~~  163 (164)
                      +++++.++++.|.+++++
T Consensus        91 ~~~~l~~~~~~m~~~~~~  108 (153)
T d2ooxe2          91 ATDRLDGIFDAIKHSRVH  108 (153)
T ss_dssp             TTCBHHHHHHHHHHSCCS
T ss_pred             CCCcHHHHHHhhhhceee
Confidence            999999999999998874

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=99.45  E-value=1.2e-13  Score=94.94  Aligned_cols=103  Identities=11%  Similarity=0.049  Sum_probs=83.9

Q ss_pred             ccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcC--------
Q 031190           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQG--------  123 (164)
Q Consensus        52 ~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~--------  123 (164)
                      .+++|+|+|++       ++.++++++|+.+|+++|.+++++++||++.++++.++|+++..|++..+....        
T Consensus         9 ~~~~V~diM~~-------~~~~v~~~~tv~e~~~~l~~~~~~~~PVvd~~~~~~lvg~is~~dl~~~l~~~~~~~~~~~~   81 (160)
T d2d4za3           9 YNIQVGDIMVR-------DVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRRISAYRRQPF   81 (160)
T ss_dssp             SSCBTTSSSBS-------SCCCEETTCBHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHHTTSSSCC
T ss_pred             cceEHHHhcCC-------CCeEECCCCcHHHHHHHHHhcCCCccccccccccccccccchHHHHHHHHhhccccccccch
Confidence            46899999997       699999999999999999999999999994223578999999999977654321        


Q ss_pred             ----------------CCCcccccccccccCCCeEEEcCCCCHHHHHHHHHhCCCC
Q 031190          124 ----------------RSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTGHMLL  163 (164)
Q Consensus       124 ----------------~~~~~~~v~~vm~~~~~~~~v~~~~~l~e~~~~m~~~~~~  163 (164)
                                      .......+.++|.+  ++++|++++++.+++++|.+++++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~tv~~~~~l~~~~~~m~~~~v~  135 (160)
T d2d4za3          82 EEMLTLEEIYRWEQREKNVVVNFETCRIDQ--SPFQLVEGTSLQKTHTLFSLLGLD  135 (160)
T ss_dssp             CSCCBHHHHHHHHHHHTTCBCCTTSSCEEC--CSCCBCTTCBHHHHHHHHHHHTCS
T ss_pred             hhccccchhhhhhhhhcccccceeeecccC--CCEEEcCCCCHHHHHHHHHHcCCe
Confidence                            01123345678888  599999999999999999988764

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.42  E-value=9.5e-14  Score=93.31  Aligned_cols=97  Identities=20%  Similarity=0.305  Sum_probs=81.9

Q ss_pred             ccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCC---------
Q 031190           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGR---------  124 (164)
Q Consensus        54 ~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~---------  124 (164)
                      ++|+++|.+       +++++++++++.+|++.|.+++++++||+  |  ++++|+++..++++.+.....         
T Consensus         1 m~V~~lM~~-------~~~~v~~~~tl~~a~~~m~~~~~~~l~V~--d--~~lvg~~~~~~~~~~~~~~~~~~~~~~~~~   69 (135)
T d3ddja2           1 MNIETLMIK-------NPPILSKEDRLGSAFKKINEGGIGRIIVA--N--EKIEGLLTTRDLLSTVESYCKDSCSQGDLY   69 (135)
T ss_dssp             SSGGGTCEE-------SCCEECTTSBHHHHHHHTTGGGCCEEEEE--S--SSEEEEEEHHHHHGGGTTCC---CCHHHHH
T ss_pred             CEeeEEeeC-------CCeEECCCCcHHHHHHHHHHhCCeEEEEE--e--cceeceeeccchhhhhccccccchhhhhcc
Confidence            578999988       69999999999999999999999999999  4  379999999999765432211         


Q ss_pred             CCcccccccccccCCCeEEEcCCCCHHHHHHHHHhCCCC
Q 031190          125 SSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTGHMLL  163 (164)
Q Consensus       125 ~~~~~~v~~vm~~~~~~~~v~~~~~l~e~~~~m~~~~~~  163 (164)
                      .....+++++|+.  ++.++++++++.+|+++|.+++++
T Consensus        70 ~~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~i~  106 (135)
T d3ddja2          70 HISTTPIIDYMTP--NPVTVYNTSDEFTAINIMVTRNFG  106 (135)
T ss_dssp             HHHTSBGGGTSEE--SCCCEETTSCHHHHHHHHHHHTCS
T ss_pred             ccccCCHHHHhCC--ccceEEeccccchhhhhhhhccee
Confidence            1135689999999  599999999999999999988773

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

Probab=99.41  E-value=5.3e-13  Score=90.54  Aligned_cols=89  Identities=18%  Similarity=0.201  Sum_probs=74.0

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcC--------------CCCccccccccc
Q 031190           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQG--------------RSSKSTKVGDIM  135 (164)
Q Consensus        70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~--------------~~~~~~~v~~vm  135 (164)
                      +++++.+++++.+|++.|.+++++++||+  |++|+++|+||..|+++......              ......+++++|
T Consensus        13 ~p~~v~~~~~v~~a~~~m~~~~~~~ipVv--d~~~~~vGiis~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (145)
T d1o50a3          13 KPTVVEEDTPIEEIVDRILEDPVTRTVYV--ARDNKLVGMIPVMHLLKVSGFHFFGFIPKEELIRSSMKRLIAKNASEIM   90 (145)
T ss_dssp             CCEEECTTCBHHHHHHHHHHSTTCCEEEE--EETTEEEEEEEHHHHHHHHHHHHHCCCC-------CCCCCSSCBHHHHC
T ss_pred             CCEEECCcCcHHHHHHHHHHcCCceEEEe--ccCcceeeeeccchhhhhhhcccccccchhHHHHhhhhhccccCHHHHc
Confidence            69999999999999999999999999999  77899999999999977554321              012234567777


Q ss_pred             ccCCCeEEEcCCCCHHHHHHHHHhCCCC
Q 031190          136 TEENKLITVSPDTKVLRAMQLMTGHMLL  163 (164)
Q Consensus       136 ~~~~~~~~v~~~~~l~e~~~~m~~~~~~  163 (164)
                      ..   ++++.+++++.+|+.+|.+++++
T Consensus        91 ~~---~~~i~~~~~l~~a~~~m~~~~i~  115 (145)
T d1o50a3          91 LD---PVYVHMDTPLEEALKLMIDNNIQ  115 (145)
T ss_dssp             BC---CCCBCTTSBHHHHHHHHHHHTCS
T ss_pred             CC---CEEEcCCCCHHHHHHHHHHcCce
Confidence            66   78899999999999999988764

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.39  E-value=1.6e-13  Score=94.54  Aligned_cols=105  Identities=14%  Similarity=0.172  Sum_probs=83.3

Q ss_pred             cccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCC----CC
Q 031190           51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGR----SS  126 (164)
Q Consensus        51 ~~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~----~~  126 (164)
                      |.+.++.|+|....     +++++..++++.+|++.|.+++++++||++ +++++++|+|+.+|++..+.....    ..
T Consensus        10 l~~~t~~Dlm~~~~-----~vv~l~~~~sv~eA~~~l~~~~~~~~pVv~-~~~~~~vG~is~~Dl~~~~~~~~~~~~~~~   83 (159)
T d2v8qe2          10 MKSHRCYDLIPTSS-----KLVVFDTSLQVKKAFFALVTNGVRAAPLWD-SKKQSFVGMLTITDFINILHRYYKSALVQI   83 (159)
T ss_dssp             HHHSBGGGGSCSEE-----EEEEEETTSBHHHHHHHHHHHTCSEEEEEE-TTTTEEEEEEEHHHHHHHHHHHHHHHTTTC
T ss_pred             hcCCEEEeECCCCC-----ceEEEcCCCcHHHHHHHHHHcCCCceeEEE-CCCCcEEEEEEHHHHHHHHHhccccccchh
Confidence            45679999996643     389999999999999999999999999995 357899999999999876653210    00


Q ss_pred             ----------cccccccccccCCCeEEEcCCCCHHHHHHHHHhCCCC
Q 031190          127 ----------KSTKVGDIMTEENKLITVSPDTKVLRAMQLMTGHMLL  163 (164)
Q Consensus       127 ----------~~~~v~~vm~~~~~~~~v~~~~~l~e~~~~m~~~~~~  163 (164)
                                ......++|.+  +++++++++++.+++++|.+++++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~l~~v~~~m~~~~~~  128 (159)
T d2v8qe2          84 YELEEHKIETWREVYLQDSFK--PLVCISPNASLFDAVSSLIRNKIH  128 (159)
T ss_dssp             CCGGGCBHHHHHHHHSSSSCC--CCCCBCTTSBHHHHHHHHHHHTCS
T ss_pred             hhhhhhhcccccceeeeeecc--ceEEECCCCcHHHHHHHHHHhCCe
Confidence                      01133567777  589999999999999999998764

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.39  E-value=4.4e-13  Score=91.08  Aligned_cols=103  Identities=17%  Similarity=0.161  Sum_probs=79.9

Q ss_pred             cccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCcccccc
Q 031190           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVG  132 (164)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~v~  132 (164)
                      ..++++++....+    +++++.+++++.+|++.|.+++++++||+  |++|+++|+||..|+++.+..........++.
T Consensus         8 ~~~l~~l~i~~~~----~v~~v~~~~tv~eal~~m~~~~~~~lpVv--d~~~~~~Gvit~~di~~~l~~~~~~~~~~~v~   81 (145)
T d2v8qe1           8 SKSLEELQIGTYA----NIAMVRTTTPVYVALGIFVQHRVSALPVV--DEKGRVVDIYSKFDVINLAAEKTYNNLDVSVT   81 (145)
T ss_dssp             GSBHHHHTCSBCS----SCCCEETTCBHHHHHHHHHHHCCSEEEEE--CTTSBEEEEEEGGGTGGGGGSSCCCCCSSBHH
T ss_pred             hCCHHHHcCCCCC----CceEEcCcCcHHHHHHHHHHcCCCccccc--ccCCceEEEEEcchhhhhhhcccccchhhhhh
Confidence            3467777543111    58999999999999999999999999999  88999999999999976554332222333433


Q ss_pred             c------ccccCCCeEEEcCCCCHHHHHHHHHhCCCC
Q 031190          133 D------IMTEENKLITVSPDTKVLRAMQLMTGHMLL  163 (164)
Q Consensus       133 ~------vm~~~~~~~~v~~~~~l~e~~~~m~~~~~~  163 (164)
                      +      .|..  +++++.+++++.++++.|.+++++
T Consensus        82 ~~~~~~~~~~~--~~~~v~~~~~l~~~~~~m~~~~~~  116 (145)
T d2v8qe1          82 KALQHRSHYFE--GVLKCYLHETLEAIINRLVEAEVH  116 (145)
T ss_dssp             HHGGGCCSCCC--SCCEECTTSBHHHHHHHHHHHTCS
T ss_pred             hccchhhhccC--CCeEECCCCcHHHHHHHHHHcCce
Confidence            3      3455  588999999999999999988763

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.38  E-value=8e-13  Score=89.35  Aligned_cols=90  Identities=19%  Similarity=0.184  Sum_probs=69.1

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCccccccc------ccccCCCeEE
Q 031190           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGD------IMTEENKLIT  143 (164)
Q Consensus        70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~v~~------vm~~~~~~~~  143 (164)
                      ++.++.+++++.+|++.|.+++++++||+  |++|+++|+||.+|+++.+...........+.+      .+..  ++++
T Consensus        18 ~v~tv~~~~~v~~a~~~m~~~~~~~ipVv--d~~~~~vG~it~~Di~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~   93 (140)
T d2nyca1          18 NMKSCQMTTPVIDVIQMLTQGRVSSVPII--DENGYLINVYEAYDVLGLIKGGIYNDLSLSVGEALMRRSDDFE--GVYT   93 (140)
T ss_dssp             SCCCBCTTSBHHHHHHHHHHHTCSEEEEE--CTTCBEEEEEEHHHHHHHHHTC----CCSBHHHHHHHCC--------CE
T ss_pred             CCEEEcCcCcHHHHHHHHHHcCCcEEEEE--ecCCeEcceehhhHHHHHHhhccccccccchhhhhhhhhhccc--ccEE
Confidence            69999999999999999999999999999  888999999999999877654432222233322      2333  4789


Q ss_pred             EcCCCCHHHHHHHHHhCCCC
Q 031190          144 VSPDTKVLRAMQLMTGHMLL  163 (164)
Q Consensus       144 v~~~~~l~e~~~~m~~~~~~  163 (164)
                      |++++++.+++++|.+++++
T Consensus        94 v~~~~~l~~~~~~~~~~~~~  113 (140)
T d2nyca1          94 CTKNDKLSTIMDNIRKARVH  113 (140)
T ss_dssp             ECTTSBHHHHHHHHHHHTCS
T ss_pred             ECCCCcHHHHHHHHHhcCee
Confidence            99999999999999988764

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.37  E-value=5.6e-13  Score=93.49  Aligned_cols=104  Identities=17%  Similarity=0.133  Sum_probs=81.9

Q ss_pred             ccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcC---CCC--
Q 031190           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQG---RSS--  126 (164)
Q Consensus        52 ~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~---~~~--  126 (164)
                      ...++.|+|.+..     ++++++++.++.+|++.|.+++++++||++ +++++++|++|..|+++.+....   ...  
T Consensus        18 ~~~~~~dvm~~s~-----~vv~i~~~~~v~~A~~~m~~~~i~~lpVvd-~~~~~~vGiis~~Di~~~l~~~~~~~~~~~~   91 (179)
T d2ooxe1          18 RSRTSYDVLPTSF-----RLIVFDVTLFVKTSLSLLTLNNIVSAPLWD-SEANKFAGLLTMADFVNVIKYYYQSSSFPEA   91 (179)
T ss_dssp             HHSBHHHHSCSEE-----EEEEEETTSBHHHHHHHHHHHTCSCEEEEE-TTTTEEEEEECHHHHHHHHHHHHHHCSCGGG
T ss_pred             cCCEeeeeCCCCC-----cEEEEECcchHHHHHHHHHHcCCCeEEEEe-CCCCeeEEEEeechHHHHHHhccccccchhh
Confidence            5678999997543     389999999999999999999999999994 35689999999999987665320   000  


Q ss_pred             -------------cccccccccccCCCeEEEcCCCCHHHHHHHHHhCCCC
Q 031190          127 -------------KSTKVGDIMTEENKLITVSPDTKVLRAMQLMTGHMLL  163 (164)
Q Consensus       127 -------------~~~~v~~vm~~~~~~~~v~~~~~l~e~~~~m~~~~~~  163 (164)
                                   .......+|..  ++++++++++|.+|+.+|.+++++
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~--~~i~v~~~~sl~~~~~~m~~~~~~  139 (179)
T d2ooxe1          92 IAEIDKFRLLGLREVERKIGAIPP--ETIYVHPMHSLMDACLAMSKSRAR  139 (179)
T ss_dssp             GGGGGGSBHHHHHHHHHHTTCSCS--SCCCBCTTSBHHHHHHHHHHTTCS
T ss_pred             hhhhhccchhhhcccceeeeeccc--CceEECCCCcHHHHHHHhhhcCce
Confidence                         00123345666  589999999999999999998864

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.32  E-value=2.2e-14  Score=95.06  Aligned_cols=88  Identities=16%  Similarity=0.224  Sum_probs=39.3

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEEEEecCC---CCcEEEEEehHHHHHHHHHcCCCCcccccccccccCCCeEEEcC
Q 031190           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGE---QKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSP  146 (164)
Q Consensus        70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~---~~~~vGivt~~dil~~~~~~~~~~~~~~v~~vm~~~~~~~~v~~  146 (164)
                      +++++++++|+.+|+++|.+++++++||+  |+   +++++|+||.+|+. ++...   ..+.++.++|...+++.++++
T Consensus         5 ~pvtv~~~~tl~da~~~m~~~~i~~~pVv--d~~~~~~~lvGivT~~Di~-~~~~~---~~~~~~~~~~~~~~~~~~v~~   78 (120)
T d1jr1a4           5 DPVVLSPKDRVRDVFEAKARHGFCGIPIT--DTGRMGSRLVGIISSRDID-FLKEE---EHDRFLEEIMTKREDLVVAPA   78 (120)
T ss_dssp             TTCC----CCCC--CCBC-----------------CTTCCC--------------------------CCSBTTTSCCEET
T ss_pred             CCEEECCcCCHHHHHHHHHHhCCCeEEEe--eccccCCeEeeeeeeeeee-ehhcc---ccCceeEEEEeeccCceEECC
Confidence            58899999999999999999999999999  53   67999999999984 33221   234566677655446889999


Q ss_pred             CCCHHHHHHHHHhCCCC
Q 031190          147 DTKVLRAMQLMTGHMLL  163 (164)
Q Consensus       147 ~~~l~e~~~~m~~~~~~  163 (164)
                      ++++.+|+++|.+++++
T Consensus        79 ~~~~~~a~~~m~~~~i~   95 (120)
T d1jr1a4          79 GITLKEANEILQRSKKG   95 (120)
T ss_dssp             TCCHHHHHHHTCSCC--
T ss_pred             CCCHHHHHHHHHHcCcc
Confidence            99999999999988763

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.16  E-value=4.6e-11  Score=79.34  Aligned_cols=60  Identities=23%  Similarity=0.284  Sum_probs=55.5

Q ss_pred             ccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHH
Q 031190           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII  120 (164)
Q Consensus        52 ~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~  120 (164)
                      .+.+++++|.+       ++.++.+++++.+|+++|.++++.++||+  |++|+++|+||.+|+++.+.
T Consensus        63 ~~~~v~~im~~-------~~~~v~~~~~l~~a~~~m~~~~~~~lPVV--D~~g~lvGiIt~~Dil~~i~  122 (127)
T d2ouxa2          63 DDTLIADILNE-------RVISVHVGDDQEDVAQTIRDYDFLAVPVT--DYDDHLLGIVTVDDIIDVID  122 (127)
T ss_dssp             TTSBHHHHSBS-------CCCCEETTSBHHHHHHHHHHHTCSEEEEE--CTTCBEEEEEEHHHHHHHHH
T ss_pred             ccEEhhhhccC-------CCccCCCCCCHHHHHHHHHHhCCEEEEEE--eCCCEEEEEEEHHHHHHHHH
Confidence            56799999998       69999999999999999999999999999  88999999999999987653

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=98.97  E-value=6.5e-10  Score=73.49  Aligned_cols=60  Identities=30%  Similarity=0.377  Sum_probs=55.1

Q ss_pred             ccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHH
Q 031190           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII  120 (164)
Q Consensus        52 ~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~  120 (164)
                      ...++.++|.+       ++.++++++++.+|++.|.+++.+++||+  |++|+++|+||..|+++.+.
T Consensus        65 ~~~~v~~~~~~-------~~~~v~~~~~l~~~~~~m~~~~~~~l~Vv--d~~~~lvGiit~~Dll~~i~  124 (127)
T d2ef7a1          65 LETKAEEFMTA-------SLITIREDSPITGALALMRQFNIRHLPVV--DDKGNLKGIISIRDITRAID  124 (127)
T ss_dssp             TTCBGGGTSEE-------CCCCEETTSBHHHHHHHHHHHTCSEEEEE--CTTSCEEEEEEHHHHHHHHH
T ss_pred             ccchhhhhhhh-------hccccccccchhHHHHHHHHcCceEEEEE--eCCCeEEEEEEHHHHHHHHH
Confidence            55789999987       69999999999999999999999999999  88999999999999988654

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=98.97  E-value=2.3e-10  Score=76.31  Aligned_cols=59  Identities=27%  Similarity=0.388  Sum_probs=54.6

Q ss_pred             ccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHH
Q 031190           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI  119 (164)
Q Consensus        52 ~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~  119 (164)
                      .+.+++++|+.       ++.++.+++++.+|+++|.+++++++||+  |++|+++|+||.+|+++.+
T Consensus        72 ~~~~v~~im~~-------~~~~v~~~~~l~~a~~~m~~~~i~~lpVv--d~~g~lvGiit~~Dil~~~  130 (135)
T d3ddja2          72 STTPIIDYMTP-------NPVTVYNTSDEFTAINIMVTRNFGSLPVV--DINDKPVGIVTEREFLLLY  130 (135)
T ss_dssp             HTSBGGGTSEE-------SCCCEETTSCHHHHHHHHHHHTCSEEEEE--CTTSCEEEEEEHHHHGGGG
T ss_pred             ccCCHHHHhCC-------ccceEEeccccchhhhhhhhcceeEEEEE--eCCCEEEEEEEHHHHHHHH
Confidence            46789999988       69999999999999999999999999999  8899999999999998744

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

Probab=98.97  E-value=4.8e-10  Score=75.83  Aligned_cols=61  Identities=23%  Similarity=0.361  Sum_probs=55.6

Q ss_pred             ccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHH
Q 031190           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIV  121 (164)
Q Consensus        52 ~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~  121 (164)
                      ...++.++|.+       ++.++.+++++.+|++.|.++++.++||+  |++|+++|+||.+|+++.+..
T Consensus        63 ~~~~v~~im~~-------~~~~v~~~~~~~~a~~~m~~~~~~~lPVV--d~~g~lvGiIt~~Dil~~l~~  123 (144)
T d2yvxa2          63 PRTRVAEIMNP-------KVVYVRTDTDQEEVARLMADYDFTVLPVV--DEEGRLVGIVTVDDVLDVLEA  123 (144)
T ss_dssp             TTCBSTTTSBS-------SCCCEESSCCHHHHHHHHHHSCCSEEEEE--CSSCBEEEEEEHHHHHHHHHH
T ss_pred             cccchHHhccc-------CCccCCCCChHHHHHHHHHHcCCCEEEEE--eECCEEEEEEEHHHHHHHHHH
Confidence            45688999998       69999999999999999999999999999  888999999999999986653

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=98.96  E-value=9.8e-10  Score=73.60  Aligned_cols=60  Identities=23%  Similarity=0.406  Sum_probs=55.5

Q ss_pred             ccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHH
Q 031190           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII  120 (164)
Q Consensus        52 ~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~  120 (164)
                      ...+++++|.+       +++++.+++++.++++.|.+++.+++||+  |++|+++|+||.+|+++.+.
T Consensus        71 ~~~~v~~im~~-------~~~~v~~~~~~~~~~~~m~~~~~~~l~Vv--d~~~~~iGiIt~~Dil~~l~  130 (141)
T d3ddja1          71 YGKVVKDVMVT-------NLVTIDELASVNRAAAEMIVKRIGSLLIL--NKDNTIRGIITERDLLIALH  130 (141)
T ss_dssp             HTCBHHHHSBC-------CCCBCCTTSBHHHHHHHHHHHTCSEEEEE--CTTSCEEEEEEHHHHHHHHH
T ss_pred             cCCCHHHHhCc-------ccccccccchhhHHHHHHHHcCCCEEEEE--ccCCEEEEEEEHHHHHHHHH
Confidence            45789999987       69999999999999999999999999999  88999999999999988664

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.93  E-value=5.5e-10  Score=73.41  Aligned_cols=60  Identities=23%  Similarity=0.322  Sum_probs=50.5

Q ss_pred             ccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHH
Q 031190           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII  120 (164)
Q Consensus        52 ~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~  120 (164)
                      .+..+.++|.+       +++++.+++++.+|+++|.+++++++||+  |++|+++|+||.+|+++++.
T Consensus        58 ~~~~~~~~~~~-------~~~~v~~~~~l~~~~~~~~~~~~~~lpVv--d~~~~liGiit~~dil~~~~  117 (122)
T d2yzqa2          58 DEEQLAMLVKR-------DVPVVKENDTLKKAAKLMLEYDYRRVVVV--DSKGKPVGILTVGDIIRRYF  117 (122)
T ss_dssp             ------CCCBS-------CCCEEETTSBHHHHHHHHHHHTCSEEEEE--CTTSCEEEEEEHHHHHHHTT
T ss_pred             cccchhhcccc-------ceeecchhhHHHHHHHHHHHcCcEEEEEE--eCCCEEEEEEEHHHHHHHHH
Confidence            45678888887       69999999999999999999999999999  88999999999999988654

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.89  E-value=5.4e-10  Score=76.16  Aligned_cols=58  Identities=19%  Similarity=0.321  Sum_probs=53.6

Q ss_pred             ccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHH
Q 031190           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRK  118 (164)
Q Consensus        52 ~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~  118 (164)
                      .+.++.++|.+       ++.++.+++++.++.+.|.+++++++||+  |++|+++|+||.+|+++.
T Consensus        97 ~~~~v~~~m~~-------~~~tv~~~~~l~~~~~~m~~~~~~~lpVv--d~~g~lvGivt~~Dil~~  154 (156)
T d2yzqa1          97 PNKPVAEIMTR-------DVIVATPHMTVHEVALKMAKYSIEQLPVI--RGEGDLIGLIRDFDLLKV  154 (156)
T ss_dssp             CCCBGGGTCBS-------SCCCBCTTSBHHHHHHHHHHHTCSEEEEE--ETTTEEEEEEEHHHHGGG
T ss_pred             cCCEeehhccc-------CceEECcccccHHHHHHHHHcCeeEEEEE--eCCCEEEEEEEHHHHHHH
Confidence            56789999987       69999999999999999999999999999  788999999999999764

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

Probab=98.89  E-value=1.4e-09  Score=71.91  Aligned_cols=59  Identities=20%  Similarity=0.352  Sum_probs=53.7

Q ss_pred             ccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHH
Q 031190           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII  120 (164)
Q Consensus        52 ~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~  120 (164)
                      ...+++++|..       ++.++.+++++.+|+++|.+++++++||+  | +|+++|+||.+|+++.++
T Consensus        68 ~~~~v~~im~~-------~~~~v~~~~~l~~a~~~m~~~~~~~lpVv--d-~~~~~GiIt~~Dil~~~i  126 (127)
T d2rc3a1          68 KDTQVKEIMTR-------QVAYVDLNNTNEDCMALITEMRVRHLPVL--D-DGKVIGLLSIGDLVKDAI  126 (127)
T ss_dssp             GGSBGGGTSBC-------SCCCBCTTCBHHHHHHHHHHHTCSEEEEE--E-TTEEEEEEEHHHHHHHHH
T ss_pred             cceeEeeeccc-------eeEEeccCccHHHHHHHHHHCCCcEEEEE--E-CCEEEEEEEHHHHHHHHh
Confidence            45789999987       69999999999999999999999999999  5 589999999999998654

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

Probab=98.89  E-value=3.7e-09  Score=71.01  Aligned_cols=60  Identities=20%  Similarity=0.297  Sum_probs=54.0

Q ss_pred             ccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHH
Q 031190           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIV  121 (164)
Q Consensus        52 ~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~  121 (164)
                      ...+++++|..        +.++.+++++.+|+++|.+++.+++||+  |++|+++|+||.+|+++.+..
T Consensus        82 ~~~~~~~~~~~--------~~~i~~~~~l~~a~~~m~~~~i~~lpVV--d~~g~i~Gvit~~dil~~l~~  141 (145)
T d1o50a3          82 IAKNASEIMLD--------PVYVHMDTPLEEALKLMIDNNIQEMPVV--DEKGEIVGDLNSLEILLALWK  141 (145)
T ss_dssp             SSCBHHHHCBC--------CCCBCTTSBHHHHHHHHHHHTCSEEEEE--CTTSCEEEEEEHHHHHHHHHH
T ss_pred             cccCHHHHcCC--------CEEEcCCCCHHHHHHHHHHcCceEEEEE--eCCCeEEEEEEHHHHHHHHHh
Confidence            45678888865        8899999999999999999999999999  889999999999999987764

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

Probab=98.88  E-value=2.3e-09  Score=70.24  Aligned_cols=60  Identities=18%  Similarity=0.322  Sum_probs=55.1

Q ss_pred             ccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHH
Q 031190           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII  120 (164)
Q Consensus        52 ~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~  120 (164)
                      ...++.++|..       ++.++++++++.++++.|.+++...+||+  |++|+++|+||..|+++.+.
T Consensus        58 ~~~~v~~~~~~-------~~~~v~~~~~l~~~~~~~~~~~~~~lpVv--de~g~~~Gvit~~dil~~l~  117 (121)
T d1vr9a3          58 LDSSVFNKVSL-------PDFFVHEEDNITHALLLFLEHQEPYLPVV--DEEMRLKGAVSLHDFLEALI  117 (121)
T ss_dssp             TTSBSGGGCBC-------TTCCEETTSBHHHHHHHHHHCCCSEEEEE--CTTCBEEEEEEHHHHHHHHH
T ss_pred             ccccccccccC-------ccEEECCCCCHHHHHHHHHhcCceeeeeE--CCCCeEEEEEEHHHHHHHHH
Confidence            35688999987       69999999999999999999999999999  89999999999999998765

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.88  E-value=2.2e-09  Score=70.48  Aligned_cols=56  Identities=21%  Similarity=0.461  Sum_probs=51.6

Q ss_pred             ccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHH
Q 031190           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (164)
Q Consensus        52 ~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~  117 (164)
                      ....++++|.+       ++.++++++++.+|+++|.+++++++||+  | +|+++|+||.+|+++
T Consensus        65 ~~~~v~~im~~-------~~~~v~~~~~~~~~~~~m~~~~~~~lpVv--d-~~~lvGiit~~Dil~  120 (123)
T d1y5ha3          65 NTATAGELARD-------SIYYVDANASIQEMLNVMEEHQVRRVPVI--S-EHRLVGIVTEADIAR  120 (123)
T ss_dssp             TTSBHHHHHTT-------CCCCEETTCCHHHHHHHHHHHTCSEEEEE--E-TTEEEEEEEHHHHHH
T ss_pred             ccceEEEEeec-------cceeeeecchHHHHHHHHHHcCceEEEEE--E-CCEEEEEEEHHHHHh
Confidence            45789999988       69999999999999999999999999999  5 579999999999986

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.87  E-value=2.5e-09  Score=69.93  Aligned_cols=58  Identities=19%  Similarity=0.350  Sum_probs=53.1

Q ss_pred             cccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHH
Q 031190           51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRK  118 (164)
Q Consensus        51 ~~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~  118 (164)
                      +.+.+++++|.+       ++.++++++++.+|++.|.+++.+++||+  + +|+++|+||.+|++++
T Consensus        61 ~~~~~v~~~m~~-------~~~~v~~~~~l~~a~~~m~~~~~~~l~V~--~-~~~l~Givt~~Dil~A  118 (120)
T d1pbja3          61 LAEVKVWEVMER-------DLVTISPRATIKEAAEKMVKNVVWRLLVE--E-DDEIIGVISATDILRA  118 (120)
T ss_dssp             TTTSBHHHHCBC-------GGGEECTTSCHHHHHHHHHHHTCSEEEEE--E-TTEEEEEEEHHHHHHH
T ss_pred             ccceeEeeeccc-------ccccccchhHHHHHHHHHHHcCCeEEEEE--E-CCEEEEEEEHHHHHhc
Confidence            467899999987       69999999999999999999999999999  4 5899999999999875

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.87  E-value=1.4e-09  Score=73.30  Aligned_cols=58  Identities=21%  Similarity=0.276  Sum_probs=53.5

Q ss_pred             ccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHH
Q 031190           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRK  118 (164)
Q Consensus        52 ~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~  118 (164)
                      ...+++++|..       ++.++++++++.+|+++|.+++++++||+  |++|+++|+||..|+++.
T Consensus        67 ~~~~v~~im~~-------~~~~v~~~~~l~~~~~~m~~~~~~~lpVv--d~~g~l~Giit~~Dil~~  124 (142)
T d1pvma4          67 DEVPIRLVMRK-------PIPKVKSDYDVKDVAAYLSENGLERCAVV--DDPGRVVGIVTLTDLSRY  124 (142)
T ss_dssp             GGSBGGGTSBS-------SCCEEETTCBHHHHHHHHHHHTCSEEEEE--CTTCCEEEEEEHHHHTTT
T ss_pred             ccccccccccc-------ccccccchhhHHHHHHHHHHcCCcEEEEE--ecCCEEEEEEEHHHHHHH
Confidence            45789999987       69999999999999999999999999999  888999999999999763

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

Probab=98.85  E-value=3.3e-09  Score=71.02  Aligned_cols=59  Identities=22%  Similarity=0.392  Sum_probs=53.7

Q ss_pred             ccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHH
Q 031190           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII  120 (164)
Q Consensus        52 ~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~  120 (164)
                      ...+++++|.+       ++.++++++++.+|+++|.+++++++||+  | +|+++|+||.+|+++.+.
T Consensus        73 ~~~~v~~im~~-------~~~~v~~~~~l~~a~~~m~~~~~~~lpVv--d-~~~lvGiit~~Dil~~~~  131 (139)
T d2o16a3          73 FETPLFEVMHT-------DVTSVAPQAGLKESAIYMQKHKIGCLPVV--A-KDVLVGIITDSDFVTIAI  131 (139)
T ss_dssp             CCCBHHHHSCS-------CEEEBCTTSBHHHHHHHHHHTTCSCEEEE--E-TTEEEEEECHHHHHHHHH
T ss_pred             cccchhHhhcc-------ccccccccchHHHHHHHHHHcCceEEEEE--E-CCEEEEEEEHHHHHHHHH
Confidence            45789999987       69999999999999999999999999999  5 489999999999988764

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.84  E-value=4e-09  Score=69.48  Aligned_cols=74  Identities=16%  Similarity=0.220  Sum_probs=56.4

Q ss_pred             ccccchhhhhcCcccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHH
Q 031190           39 ESVSSARMEEHGFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRK  118 (164)
Q Consensus        39 ~~~~~~~~~~~~~~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~  118 (164)
                      +.++...+......+....+.|...      +++++.+++++.+|+++|.+++++++||+  |++|+++|+||.+|+++.
T Consensus        44 Givt~~Di~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~~a~~~m~~~~~~~lpVV--d~~g~lvGiiT~~Dil~~  115 (126)
T d1zfja4          44 GIITNRDMRFISDYNAPISEHMTSE------HLVTAAVGTDLETAERILHEHRIEKLPLV--DNSGRLSGLITIKDIEKV  115 (126)
T ss_dssp             EEEEHHHHHHCSCSSSBTTTSCCCS------CCCCEETTCCHHHHHHHHHHTTCSEEEEE--CTTSBEEEEEEHHHHHHH
T ss_pred             EEeEHHHHHHhhccCCceeeeeecc------ceeecCCCCCHHHHHHHHHhcCCcEEEEE--cCCCeEEEEEEHHHHHHH
Confidence            3344444444333334444444332      58899999999999999999999999999  889999999999999986


Q ss_pred             HH
Q 031190          119 II  120 (164)
Q Consensus       119 ~~  120 (164)
                      ..
T Consensus       116 ~~  117 (126)
T d1zfja4         116 IE  117 (126)
T ss_dssp             HH
T ss_pred             hh
Confidence            54

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=98.78  E-value=3.5e-08  Score=66.89  Aligned_cols=67  Identities=21%  Similarity=0.283  Sum_probs=55.7

Q ss_pred             ccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHH
Q 031190           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIV  121 (164)
Q Consensus        52 ~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~  121 (164)
                      ...++.++|... .....++.++.+++++.++++.|.+++++++||+  |++|+++|+||.+|+++++..
T Consensus        68 ~~~~v~~~~~~~-~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vv--d~~~~lvGivT~~Dil~~~~~  134 (153)
T d2ooxe2          68 LDLSVGEALLKR-PANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVV--DENLKLEGILSLADILNYIIY  134 (153)
T ss_dssp             GGSBHHHHHHTS-CCCSSCCCEECTTCBHHHHHHHHHHSCCSEEEEE--CTTCBEEEEEEHHHHHHHHHS
T ss_pred             cccchhhheeee-ecccCCCeEECCCCcHHHHHHhhhhceeeEEEEE--cCCCEEEEEEEHHHHHHHHHc
Confidence            356888888652 1112256789999999999999999999999999  889999999999999988764

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.77  E-value=6.2e-09  Score=69.10  Aligned_cols=59  Identities=14%  Similarity=0.302  Sum_probs=53.4

Q ss_pred             ccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHH
Q 031190           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII  120 (164)
Q Consensus        52 ~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~  120 (164)
                      .+.+++++|.+       ++.++++++++.++++.|.+++++++||+  + +|+++|+||.+|+++++.
T Consensus        68 ~~~~v~~im~~-------~~~~v~~~~~~~~~~~~m~~~~~~~l~V~--~-~~~~vGivt~~Dil~a~~  126 (132)
T d2yzia1          68 YDIPVERIMTR-------NLITANVNTPLGEVLRKMAEHRIKHILIE--E-EGKIVGIFTLSDLLEASR  126 (132)
T ss_dssp             TTSBGGGTCBC-------SCCEEETTSBHHHHHHHHHHHTCSEEEEE--E-TTEEEEEEEHHHHHHHHH
T ss_pred             cceeEeecccc-------cccccCcchHHHHHHHHHHHcCCCEEEEE--E-CCEEEEEEEHHHHHHHHH
Confidence            45789999987       69999999999999999999999999988  3 689999999999998764

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.74  E-value=8.1e-09  Score=69.37  Aligned_cols=66  Identities=23%  Similarity=0.382  Sum_probs=53.3

Q ss_pred             cccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHH
Q 031190           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIV  121 (164)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~  121 (164)
                      ..++.+.+... .....++.++.+++++.+++++|.+++++++||+  |++|+++|+||.+|++++++.
T Consensus        77 ~~~v~~~~~~~-~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vv--d~~g~l~GiVt~~dii~~lv~  142 (145)
T d2v8qe1          77 DVSVTKALQHR-SHYFEGVLKCYLHETLEAIINRLVEAEVHRLVVV--DEHDVVKGIVSLSDILQALVL  142 (145)
T ss_dssp             SSBHHHHGGGC-CSCCCSCCEECTTSBHHHHHHHHHHHTCSEEEEE--CTTSBEEEEEEHHHHHHHHHS
T ss_pred             hhhhhhccchh-hhccCCCeEECCCCcHHHHHHHHHHcCceEEEEE--ccCCEEEEEEEHHHHHHHHHh
Confidence            35566665432 1111258899999999999999999999999999  889999999999999998763

>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein YkuL
species: Bacillus subtilis [TaxId: 1423]

Probab=98.73  E-value=1e-08  Score=67.89  Aligned_cols=58  Identities=14%  Similarity=0.283  Sum_probs=51.7

Q ss_pred             ccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHH
Q 031190           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII  120 (164)
Q Consensus        52 ~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~  120 (164)
                      ...+++++|.+       ++..+.+++++.+++++|.+++  .+||+  |++|+++|+||.+|+++.+.
T Consensus        72 ~~~~v~~~m~~-------~~~~v~~~~~l~~~~~~~~~~~--~l~Vv--d~~~~~~Givt~~dil~~l~  129 (132)
T d1yava3          72 DQITVEEVMLT-------DIPRLHINDPIMKGFGMVINNG--FVCVE--NDEQVFEGIFTRRVVLKELN  129 (132)
T ss_dssp             TTSBHHHHSBC-------SCCEEETTSBHHHHHHHTTTCS--EEEEE--CTTCBEEEEEEHHHHHHHHH
T ss_pred             ccccccccccc-------cccccccchhHHHHHHHHHhCC--EEEEE--ccCCEEEEEEEHHHHHHHHH
Confidence            45789999988       6999999999999999998764  59999  88999999999999998764

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=98.73  E-value=2.5e-09  Score=70.01  Aligned_cols=59  Identities=17%  Similarity=0.307  Sum_probs=43.9

Q ss_pred             cccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHH
Q 031190           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRK  118 (164)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~  118 (164)
                      +..+.++|..+.     ++.++.+++++.+|+++|.+++++++||+  |++|+++|+||.+|+++.
T Consensus        60 ~~~~~~~~~~~~-----~~~~v~~~~~~~~a~~~m~~~~i~~lpVV--d~~~~lvGiiT~~Di~k~  118 (120)
T d1jr1a4          60 DRFLEEIMTKRE-----DLVVAPAGITLKEANEILQRSKKGKLPIV--NENDELVAIIARTDLKKN  118 (120)
T ss_dssp             ------CCSBTT-----TSCCEETTCCHHHHHHHTCSCC---CEEE--ETTTEEEEEECHHHHHHH
T ss_pred             CceeEEEEeecc-----CceEECCCCCHHHHHHHHHHcCccEEEEE--cCCCEEEEEEEHHHhhhc
Confidence            345666654432     48999999999999999999999999999  788999999999999864

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.70  E-value=1.2e-08  Score=70.34  Aligned_cols=61  Identities=21%  Similarity=0.223  Sum_probs=54.5

Q ss_pred             ccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHc
Q 031190           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQ  122 (164)
Q Consensus        52 ~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~  122 (164)
                      ...+++++|.+       ++.++.+++++.+++++|.+++..++||+  + +|+++|+||.+|+++++...
T Consensus        98 ~~~~v~~im~~-------~~~tv~~~~~l~~v~~~~~~~~~~~l~V~--d-~g~lvGiIt~~Dil~~l~~~  158 (169)
T d2j9la1          98 PTLKLRNILDL-------SPFTVTDLTPMEIVVDIFRKLGLRQCLVT--H-NGRLLGIITKKDVLKHIAQM  158 (169)
T ss_dssp             CCEECGGGEES-------SCCEEETTSBHHHHHHHHHHHTCSEEEEE--E-TTEEEEEEEHHHHHHHHHHH
T ss_pred             cccchhhhccC-------CCEEECCCCcHHHHHHHHHhcCceEEEEE--E-CCEEEEEEEHHHHHHHHHHH
Confidence            35678999998       59999999999999999999999999999  4 68999999999999887643

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.69  E-value=2.6e-08  Score=66.50  Aligned_cols=49  Identities=22%  Similarity=0.412  Sum_probs=44.7

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHH
Q 031190           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII  120 (164)
Q Consensus        70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~  120 (164)
                      ++.++++++++.++++.|.+++++++||+  |++|+++|+||.+|++++++
T Consensus        90 ~~~~v~~~~~l~~~~~~~~~~~~~~l~VV--d~~~~l~GiIt~~Dii~~l~  138 (140)
T d2nyca1          90 GVYTCTKNDKLSTIMDNIRKARVHRFFVV--DDVGRLVGVLTLSDILKYIL  138 (140)
T ss_dssp             --CEECTTSBHHHHHHHHHHHTCSEEEEE--CTTSBEEEEEEHHHHHHHHH
T ss_pred             ccEEECCCCcHHHHHHHHHhcCeeEEEEE--eCCCeEEEEEEHHHHHHHHh
Confidence            47889999999999999999999999999  88999999999999998764

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=98.69  E-value=7.1e-09  Score=70.40  Aligned_cols=57  Identities=7%  Similarity=0.022  Sum_probs=50.1

Q ss_pred             cccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHH
Q 031190           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI  119 (164)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~  119 (164)
                      ...+.++|.+       .+.++.+++++.+++++|.+++++++||+  + +|+++|+||.+|+++.+
T Consensus       102 ~~~~~~~~~~-------~~~tv~~~~~l~~~~~~m~~~~v~~l~V~--d-~g~lvGiIt~~Di~k~I  158 (160)
T d2d4za3         102 VNFETCRIDQ-------SPFQLVEGTSLQKTHTLFSLLGLDRAYVT--S-MGKLVGVVALAEIQAAI  158 (160)
T ss_dssp             CCTTSSCEEC-------CSCCBCTTCBHHHHHHHHHHHTCSEEEEE--E-TTEEEEEEEHHHHHHHH
T ss_pred             cceeeecccC-------CCEEEcCCCCHHHHHHHHHHcCCeEEEEE--E-CCEEEEEEEHHHHHHHh
Confidence            3456677777       59999999999999999999999999999  5 58999999999998754

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

Probab=98.63  E-value=2.5e-08  Score=65.72  Aligned_cols=47  Identities=28%  Similarity=0.365  Sum_probs=44.4

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHH
Q 031190           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRK  118 (164)
Q Consensus        70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~  118 (164)
                      ++.++.+++++.+|+++|.+++++++||+  |++|+++|+||..|+++.
T Consensus        75 ~~~~v~~~~~~~~a~~~m~~~~i~~lpVv--d~~g~l~Giit~~Dll~~  121 (131)
T d2riha1          75 SPITVLDTDPVHVAAEKMRRHNIRHVVVV--NKNGELVGVLSIRDLCFE  121 (131)
T ss_dssp             CCCEEETTSBHHHHHHHHHHHTCSEEEEE--CTTSCEEEEEEHHHHHSC
T ss_pred             cceeEeeecchHHHHHHHHHCCeEEEEEE--cCCCeEEEEEEHHHHHHH
Confidence            48899999999999999999999999999  889999999999999864

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.62  E-value=1.9e-08  Score=68.43  Aligned_cols=50  Identities=20%  Similarity=0.351  Sum_probs=45.3

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHH
Q 031190           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII  120 (164)
Q Consensus        70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~  120 (164)
                      +++++++++++.+|+++|.+++.+++||++ +++|+++|+||.+|+++++.
T Consensus       105 ~~~~v~~~~~l~~v~~~m~~~~~~~v~Vvd-~~~g~~~GivT~~dilk~l~  154 (159)
T d2v8qe2         105 PLVCISPNASLFDAVSSLIRNKIHRLPVID-PESGNTLYILTHKRILKFLK  154 (159)
T ss_dssp             CCCCBCTTSBHHHHHHHHHHHTCSCEEEEC-TTTCCEEEEECHHHHHHHHH
T ss_pred             ceEEECCCCcHHHHHHHHHHhCCeEEEEEE-CCCCeEEEEEeHHHHHHHHH
Confidence            689999999999999999999999999993 25689999999999998764

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=98.37  E-value=1.8e-07  Score=64.56  Aligned_cols=50  Identities=12%  Similarity=0.263  Sum_probs=44.8

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEEEEecCCC-----CcEEEEEehHHHHHHHHH
Q 031190           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ-----KSVAGIITERDYLRKIIV  121 (164)
Q Consensus        70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~-----~~~vGivt~~dil~~~~~  121 (164)
                      +++++.+++++.+|++.|.+++++++||+|  ++     ++++|+||.+||++++..
T Consensus       116 ~~i~v~~~~sl~~~~~~m~~~~~~~lpVvd--~~g~~~~~~vvgiiT~~dIlk~l~~  170 (179)
T d2ooxe1         116 ETIYVHPMHSLMDACLAMSKSRARRIPLID--VDGETGSEMIVSVLTQYRILKFISM  170 (179)
T ss_dssp             SCCCBCTTSBHHHHHHHHHHTTCSEEEEEE--ECTTTCCEEEEEEEEHHHHHHHHHT
T ss_pred             CceEECCCCcHHHHHHHhhhcCceEEEEEe--cCCCcCCCcEEEEEeHHHHHHHHHH
Confidence            589999999999999999999999999994  33     479999999999998753