Citrus Sinensis ID: 031200

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160----
Protein Sequence
MSFACFCSYRTNYFIMITVILGLGFLRRPVAIIAALLTALSIAFLNDSFAGTFNEKVTRTVRQFSPHLAAKMRPPLTPVIRGRPSAKRAIYICGRPRWVFVLIFSCVSFILWYVSCGLLTVLWALAVGLLATILHASFRTPNLKARLNTFREEFRAVWRNYSEL
Secondary Structure (PSIPRED)
ccccEEEEHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHccHHHHHHHccccccccccccccccEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHcccHHHcHcHHHHHHHHHHcHHHHHHcccccccccccccccccEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHcHHHHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
msfacfcsyrTNYFIMITVILGLGFLRRPVAIIAALLTALSIAFLndsfagtfnekVTRTVRQFsphlaakmrppltpvirgrpsakRAIYICGRPRWVFVLIFSCVSFILWYVSCGLLTVLWALAVGLLATILHASFRTPNLKARLNTFREEFRAVWRNYSEL
Flexible Loop (DISEMBL)
MSFACFCSYRTNYFIMITVILGLGFLRRPVAIIAALLTALSIAFLNDSFAGTFNEKVTRTVRQFsphlaakmrppltpvirgrpsAKRAIYICGRPRWVFVLIFSCVSFILWYVSCGLLTVLWALAVGLLATILHasfrtpnlkarLNTFREEFRAVWRNYSEL
Low Complexity Region (SEG)
MSFACFCSYRTNYFIMITVILGLGFLRRPVaiiaalltalsiaFLNDSFAGTFNEKVTRTVRQFSPHLAAKMRPPLTPVIRGRPSAKRAIYICGRPRWVFVLIFSCVSFILWYVSCGLLTVLWALAVGLLATILHASFRTPNLKARLNTFREEFRAVWRNYSEL
Disordered region (IsUnstruct)
**FACFCSYRTNYFIMITVILGLGFLRRPVAIIAALLTALSIAFLNDSFAGTFNEKVTRTVRQFSPHLAAKMRPPLTPVIRGRPSAKRAIYICGRPRWVFVLIFSCVSFILWYVSCGLLTVLWALAVGLLATILHASFRTPNLKARLNTFREEFRAVWRN****
Disordered Region (DISOPRED)
*SFACFCSYRTNYFIMITVILGLGFLRRPVAIIAALLTALSIAFLNDSFAGTFNEKVTRTVRQFSP**********************AIYICGRPRWVFVLIFSCVSFILWYVSCGLLTVLWALAVGLLATILHASFRTPNLKARLNTFREEFRAVWRNYS**
Disordered Region (DISEMBL)
MSFACFCSYRTNYFIMITVILGLGFLRRPVAIIAALLTALSIAFLNDSFAGTFNEKVTRTVRQFSPHLAAKMRPPLTPVIRGRPSAKRAIYICGRPRWVFVLIFSCVSFILWYVSCGLLTVLWALAVGLLATILHASFRTPNLKARLNTFREEFRAVWRNYSEL
Disordered Region (DISPRO)
*SFACFCSYRTNYFIMITVILGLGFLRRPVAIIAALLTALSIAFLNDSFAGTFNEKVTRTVRQFSPHLAAKMRPPL********SAKRAIYICGRPRWVFVLIFSCVSFILWYVSCGLLTVLWALAVGLLATILHASFRTPNLKARLNTFREEFRAVWRNYS**
Transmembrane Helix (TMHMM)
iiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSFACFCSYRTNYFIMITVILGLGFLRRPVAIIAALLTALSIAFLNDSFAGTFNEKVTRTVRQFSPHLAAKMRPPLTPVIRGRPSAKRAIYICGRPRWVFVLIFSCVSFILWYVSCGLLTVLWALAVGLLATILHASFRTPNLKARLNTFREEFRAVWRNYSEL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	164	2.2.26 [Sep-21-2011]
Q8W115	209	PRA1 family protein A3 OS	no	no	0.951	0.746	0.698	1e-59
Q8GWC3	209	PRA1 family protein A2 OS	no	no	0.951	0.746	0.673	2e-59
Q9LZM7	209	PRA1 family protein A1 OS	no	no	0.951	0.746	0.794	2e-59

>sp|Q8W115|PR1A3_ARATH PRA1 family protein A3 OS=Arabidopsis thaliana GN=PRA1A3 PE=2 SV=1

 Score =  228 bits (582), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 109/156 (69%), Positives = 127/156 (81%)

Query: 9   YRTNYFIMITVILGLGFLRRPVAIIAALLTALSIAFLNDSFAGTFNEKVTRTVRQFSPHL 68
           YRTNYFI+   +LGL  + RP+AI+ A LTALS+AFLNDSFA TFNEK+ RT+R FSPHL
Sbjct: 54  YRTNYFILFVFVLGLALITRPLAILGAALTALSLAFLNDSFAATFNEKMIRTIRHFSPHL 113

Query: 69  AAKMRPPLTPVIRGRPSAKRAIYICGRPRWVFVLIFSCVSFILWYVSCGLLTVLWALAVG 128
           AAKMRPP  PVIRGR + ++ +YICG+PR VFVL+    SF+LW+ SCGLL VL+AL   
Sbjct: 114 AAKMRPPHMPVIRGRSATRKTVYICGQPRLVFVLLGLTASFVLWFTSCGLLWVLYALTTA 173

Query: 129 LLATILHASFRTPNLKARLNTFREEFRAVWRNYSEL 164
           LL  +LHAS RTPNLKARLNTFREEFRAVWRNYSEL
Sbjct: 174 LLMILLHASLRTPNLKARLNTFREEFRAVWRNYSEL 209

May be involved in both secretory and endocytic intracellular trafficking in the endosomal/prevacuolar compartments.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8GWC3|PR1A2_ARATH PRA1 family protein A2 OS=Arabidopsis thaliana GN=PRA1A2 PE=2 SV=1

 Score =  228 bits (580), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 105/156 (67%), Positives = 127/156 (81%)

Query: 9   YRTNYFIMITVILGLGFLRRPVAIIAALLTALSIAFLNDSFAGTFNEKVTRTVRQFSPHL 68
           YRTNYFI++  +LGL  + RP+A++ A LTALSIAFLNDSFA +FNEK  RT+R FSPH+
Sbjct: 54  YRTNYFILVIFVLGLALVTRPLALVGAALTALSIAFLNDSFAASFNEKFIRTIRHFSPHM 113

Query: 69  AAKMRPPLTPVIRGRPSAKRAIYICGRPRWVFVLIFSCVSFILWYVSCGLLTVLWALAVG 128
           AAKMRPP  PVIRGR +A++ +Y+CG+PRWVFV+ F   S ++W+ SCGLL VL+AL   
Sbjct: 114 AAKMRPPHMPVIRGRSTARKTVYVCGKPRWVFVITFLTASLVMWFSSCGLLWVLYALLTS 173

Query: 129 LLATILHASFRTPNLKARLNTFREEFRAVWRNYSEL 164
           L   I+HAS RTPNLKARLNTFREEFRAVWRNYSEL
Sbjct: 174 LAVIIVHASIRTPNLKARLNTFREEFRAVWRNYSEL 209

May be involved in both secretory and endocytic intracellular trafficking in the endosomal/prevacuolar compartments.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LZM7|PR1A1_ARATH PRA1 family protein A1 OS=Arabidopsis thaliana GN=PRA1A1 PE=2 SV=1

 Score =  227 bits (579), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 124/156 (79%), Positives = 136/156 (87%)

Query: 9   YRTNYFIMITVILGLGFLRRPVAIIAALLTALSIAFLNDSFAGTFNEKVTRTVRQFSPHL 68
           YRTNYFIMI VILGLG L RP+AI AALLTALS+AFLNDSFAG+F+EK TRTVR+FSP L
Sbjct: 54  YRTNYFIMIVVILGLGVLTRPLAIFAALLTALSLAFLNDSFAGSFSEKATRTVRRFSPQL 113

Query: 69  AAKMRPPLTPVIRGRPSAKRAIYICGRPRWVFVLIFSCVSFILWYVSCGLLTVLWALAVG 128
           AAKMRPPLTPV RGRPS+KRAI++CG+PRWVFVL  S VSF LWY+S GLL V  AL + 
Sbjct: 114 AAKMRPPLTPVTRGRPSSKRAIHVCGQPRWVFVLTCSLVSFALWYISSGLLRVSVALLIA 173

Query: 129 LLATILHASFRTPNLKARLNTFREEFRAVWRNYSEL 164
            LATILHAS RTPNLKAR NTFREEFRAVWRNYSE+
Sbjct: 174 HLATILHASLRTPNLKARFNTFREEFRAVWRNYSEI 209

May be involved in both secretory and endocytic intracellular trafficking in the endosomal/prevacuolar compartments.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	164
225440494	209	PREDICTED: PRA1 family protein A2 isofor	0.969	0.760	0.899	8e-77
147838285	209	hypothetical protein VITISV_025566 [Viti	0.969	0.760	0.893	2e-76
224090803	209	predicted protein [Populus trichocarpa]	0.951	0.746	0.903	3e-76
356568006	209	PREDICTED: PRA1 family protein A1-like [	0.951	0.746	0.903	1e-75
351727685	209	uncharacterized protein LOC100527037 [Gl	0.951	0.746	0.897	4e-75
449483410	209	PREDICTED: PRA1 family protein A1-like [	0.951	0.746	0.878	6e-75
388500844	209	unknown [Medicago truncatula]	0.969	0.760	0.886	1e-74
449439968	209	PREDICTED: PRA1 family protein A2-like [	0.951	0.746	0.865	4e-74
194707534	209	unknown [Zea mays] gi|195652519|gb|ACG45	0.951	0.746	0.820	7e-69
326497019	209	predicted protein [Hordeum vulgare subsp	0.951	0.746	0.820	9e-69

>gi|225440494|ref|XP_002273794.1| PREDICTED: PRA1 family protein A2 isoform 1 [Vitis vinifera] gi|359481732|ref|XP_003632665.1| PREDICTED: PRA1 family protein A2 isoform 2 [Vitis vinifera] gi|297740305|emb|CBI30487.3| unnamed protein product [Vitis vinifera]

 Score =  291 bits (744), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 143/159 (89%), Positives = 151/159 (94%)

Query: 6   FCSYRTNYFIMITVILGLGFLRRPVAIIAALLTALSIAFLNDSFAGTFNEKVTRTVRQFS 65
           F  YRTNYFIMI  ILG+GFLRRP+AI+AA LTALSIAFLNDSFAGTF+EKVTRTVRQFS
Sbjct: 51  FYYYRTNYFIMIVFILGMGFLRRPIAIVAAFLTALSIAFLNDSFAGTFSEKVTRTVRQFS 110

Query: 66  PHLAAKMRPPLTPVIRGRPSAKRAIYICGRPRWVFVLIFSCVSFILWYVSCGLLTVLWAL 125
           PHLAAKMRPPLTPVIRGRPSAKR+I ICGRPRWVFVLIFS VSFILW+VSC +LTVLWAL
Sbjct: 111 PHLAAKMRPPLTPVIRGRPSAKRSILICGRPRWVFVLIFSSVSFILWFVSCSILTVLWAL 170

Query: 126 AVGLLATILHASFRTPNLKARLNTFREEFRAVWRNYSEL 164
           A+GLLATILHASFRTPNLKARLNTFREEFRAVWRNYSEL
Sbjct: 171 AIGLLATILHASFRTPNLKARLNTFREEFRAVWRNYSEL 209

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147838285|emb|CAN72272.1| hypothetical protein VITISV_025566 [Vitis vinifera]

 Score =  290 bits (741), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 142/159 (89%), Positives = 150/159 (94%)

Query: 6   FCSYRTNYFIMITVILGLGFLRRPVAIIAALLTALSIAFLNDSFAGTFNEKVTRTVRQFS 65
           F  YRTNYFIMI  ILG+GFLRRP+AI+AA LTALSIAFLNDSFAGTF+EKVTRTVRQFS
Sbjct: 51  FYYYRTNYFIMIVFILGMGFLRRPIAIVAAFLTALSIAFLNDSFAGTFSEKVTRTVRQFS 110

Query: 66  PHLAAKMRPPLTPVIRGRPSAKRAIYICGRPRWVFVLIFSCVSFILWYVSCGLLTVLWAL 125
           PHLAAKMRPPLTPVIRGRPSAKR+I ICGRPRWVFVLIFS VSFILW+VSC +LTVLWAL
Sbjct: 111 PHLAAKMRPPLTPVIRGRPSAKRSILICGRPRWVFVLIFSSVSFILWFVSCSILTVLWAL 170

Query: 126 AVGLLATILHASFRTPNLKARLNTFREEFRAVWRNYSEL 164
           A+GLL TILHASFRTPNLKARLNTFREEFRAVWRNYSEL
Sbjct: 171 AIGLLGTILHASFRTPNLKARLNTFREEFRAVWRNYSEL 209

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224090803|ref|XP_002309088.1| predicted protein [Populus trichocarpa] gi|222855064|gb|EEE92611.1| predicted protein [Populus trichocarpa]

 Score =  289 bits (740), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 141/156 (90%), Positives = 150/156 (96%)

Query: 9   YRTNYFIMITVILGLGFLRRPVAIIAALLTALSIAFLNDSFAGTFNEKVTRTVRQFSPHL 68
           YRTNYFIM+ +I+GLGFLRRP+AI+AALLTALSIAF+NDSFAGTF+EKV RTVRQFSPHL
Sbjct: 54  YRTNYFIMMILIMGLGFLRRPLAIVAALLTALSIAFMNDSFAGTFSEKVMRTVRQFSPHL 113

Query: 69  AAKMRPPLTPVIRGRPSAKRAIYICGRPRWVFVLIFSCVSFILWYVSCGLLTVLWALAVG 128
           AAKMRPPLTP IRGRPSAKRAIYICGRPRW FV+IFS VSF LWYVSCGLLTVLWALA+G
Sbjct: 114 AAKMRPPLTPGIRGRPSAKRAIYICGRPRWFFVMIFSFVSFTLWYVSCGLLTVLWALAIG 173

Query: 129 LLATILHASFRTPNLKARLNTFREEFRAVWRNYSEL 164
           LLATILHASFRTPNLKARLNTFREEFRAVWRNYSEL
Sbjct: 174 LLATILHASFRTPNLKARLNTFREEFRAVWRNYSEL 209

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356568006|ref|XP_003552205.1| PREDICTED: PRA1 family protein A1-like [Glycine max]

 Score =  286 bits (733), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 141/156 (90%), Positives = 149/156 (95%)

Query: 9   YRTNYFIMITVILGLGFLRRPVAIIAALLTALSIAFLNDSFAGTFNEKVTRTVRQFSPHL 68
           YRTNYFI+I  +L LGFLRRP+AI+AALLTALSIAFLNDSFAGTF+EKVTRTVRQFSPHL
Sbjct: 54  YRTNYFILIVSVLILGFLRRPLAIVAALLTALSIAFLNDSFAGTFSEKVTRTVRQFSPHL 113

Query: 69  AAKMRPPLTPVIRGRPSAKRAIYICGRPRWVFVLIFSCVSFILWYVSCGLLTVLWALAVG 128
           AAKMRPPLTPVIRGRPS+KRAIYICGRPRWVFVLIFS  SF LW+VS GLLTVLWALA+G
Sbjct: 114 AAKMRPPLTPVIRGRPSSKRAIYICGRPRWVFVLIFSSASFFLWFVSAGLLTVLWALAIG 173

Query: 129 LLATILHASFRTPNLKARLNTFREEFRAVWRNYSEL 164
           LLATILHASFRTPNLKARLNTFREEFRAVWRNYSEL
Sbjct: 174 LLATILHASFRTPNLKARLNTFREEFRAVWRNYSEL 209

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351727685|ref|NP_001237681.1| uncharacterized protein LOC100527037 [Glycine max] gi|255631416|gb|ACU16075.1| unknown [Glycine max]

 Score =  285 bits (729), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 140/156 (89%), Positives = 149/156 (95%)

Query: 9   YRTNYFIMITVILGLGFLRRPVAIIAALLTALSIAFLNDSFAGTFNEKVTRTVRQFSPHL 68
           YRTNYFI+I  +L LGFLRRP+AI+AALLTAL+IAFLNDSFAGTF+EKVTRTVRQFSPHL
Sbjct: 54  YRTNYFILIVSVLILGFLRRPLAIVAALLTALNIAFLNDSFAGTFSEKVTRTVRQFSPHL 113

Query: 69  AAKMRPPLTPVIRGRPSAKRAIYICGRPRWVFVLIFSCVSFILWYVSCGLLTVLWALAVG 128
           AAKMRPPLTPVIRGRPS+KRAIYICGRPRWVFVLIFS  SF LW+VS GLLTVLWALA+G
Sbjct: 114 AAKMRPPLTPVIRGRPSSKRAIYICGRPRWVFVLIFSSASFFLWFVSAGLLTVLWALAIG 173

Query: 129 LLATILHASFRTPNLKARLNTFREEFRAVWRNYSEL 164
           LLATILHASFRTPNLKARLNTFREEFRAVWRNYSEL
Sbjct: 174 LLATILHASFRTPNLKARLNTFREEFRAVWRNYSEL 209

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449483410|ref|XP_004156583.1| PREDICTED: PRA1 family protein A1-like [Cucumis sativus]

 Score =  285 bits (728), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 137/156 (87%), Positives = 148/156 (94%)

Query: 9   YRTNYFIMITVILGLGFLRRPVAIIAALLTALSIAFLNDSFAGTFNEKVTRTVRQFSPHL 68
           YRTNYFIMI  IL LGFLRRP+AI+AA LTALSIAFLNDSFAGTF+EKVTRTVRQFSPH+
Sbjct: 54  YRTNYFIMIVFILALGFLRRPLAIVAAFLTALSIAFLNDSFAGTFSEKVTRTVRQFSPHM 113

Query: 69  AAKMRPPLTPVIRGRPSAKRAIYICGRPRWVFVLIFSCVSFILWYVSCGLLTVLWALAVG 128
           AAKMRPPLTPVIRGRPSAKRAIYICGRPRWVFVL+FS VSF+ W++SCGLLTVLW+L+ G
Sbjct: 114 AAKMRPPLTPVIRGRPSAKRAIYICGRPRWVFVLVFSSVSFLFWFISCGLLTVLWSLSFG 173

Query: 129 LLATILHASFRTPNLKARLNTFREEFRAVWRNYSEL 164
           LLAT+LHASFRTPNLK RLNTFREEFRAVWRNYSEL
Sbjct: 174 LLATLLHASFRTPNLKPRLNTFREEFRAVWRNYSEL 209

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388500844|gb|AFK38488.1| unknown [Medicago truncatula]

 Score =  283 bits (725), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 141/159 (88%), Positives = 148/159 (93%)

Query: 6   FCSYRTNYFIMITVILGLGFLRRPVAIIAALLTALSIAFLNDSFAGTFNEKVTRTVRQFS 65
           F  YRTNYFI+I  +L LGFLRRP+AI+AALLTALSIAFLNDSFAGTF+EKVTRTVRQFS
Sbjct: 51  FYYYRTNYFILIVSVLILGFLRRPLAIVAALLTALSIAFLNDSFAGTFSEKVTRTVRQFS 110

Query: 66  PHLAAKMRPPLTPVIRGRPSAKRAIYICGRPRWVFVLIFSCVSFILWYVSCGLLTVLWAL 125
           PHLAAKMRPPLTPVIRGRPSAKRAIYICGRPRWVFV IFS  SF LW+VS GLLTVLWAL
Sbjct: 111 PHLAAKMRPPLTPVIRGRPSAKRAIYICGRPRWVFVSIFSSASFFLWFVSAGLLTVLWAL 170

Query: 126 AVGLLATILHASFRTPNLKARLNTFREEFRAVWRNYSEL 164
           A+GLLATILHAS RTPNLKARLNTFREEFRAVWRNYSEL
Sbjct: 171 AIGLLATILHASLRTPNLKARLNTFREEFRAVWRNYSEL 209

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449439968|ref|XP_004137757.1| PREDICTED: PRA1 family protein A2-like [Cucumis sativus]

 Score =  282 bits (721), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 135/156 (86%), Positives = 147/156 (94%)

Query: 9   YRTNYFIMITVILGLGFLRRPVAIIAALLTALSIAFLNDSFAGTFNEKVTRTVRQFSPHL 68
           YRTNYFIMI  IL LGFLRRP+AI+AA LTALSIAFLNDSFAGTF+EKVTRTVRQFSPH+
Sbjct: 54  YRTNYFIMIVFILALGFLRRPLAIVAAFLTALSIAFLNDSFAGTFSEKVTRTVRQFSPHM 113

Query: 69  AAKMRPPLTPVIRGRPSAKRAIYICGRPRWVFVLIFSCVSFILWYVSCGLLTVLWALAVG 128
           AAKMRPPLTPVIRGRPSAKRAIYICGRPRWVFVL+FS VSF+ W++SCGLLTVLW+L+ G
Sbjct: 114 AAKMRPPLTPVIRGRPSAKRAIYICGRPRWVFVLVFSSVSFLFWFISCGLLTVLWSLSFG 173

Query: 129 LLATILHASFRTPNLKARLNTFREEFRAVWRNYSEL 164
           LL  ++HASFRTPNLKARLNTFREEFRAVWRNYSEL
Sbjct: 174 LLGMLVHASFRTPNLKARLNTFREEFRAVWRNYSEL 209

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|194707534|gb|ACF87851.1| unknown [Zea mays] gi|195652519|gb|ACG45727.1| PRA1 family protein [Zea mays] gi|413949047|gb|AFW81696.1| PRA1 family isoform 1 [Zea mays] gi|413949048|gb|AFW81697.1| PRA1 family isoform 2 [Zea mays]

 Score =  265 bits (676), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 128/156 (82%), Positives = 141/156 (90%)

Query: 9   YRTNYFIMITVILGLGFLRRPVAIIAALLTALSIAFLNDSFAGTFNEKVTRTVRQFSPHL 68
           YRTNYFI+I  ILG+GFL +PVAI+AA +T LSIAFLNDSFA TFNEKVTRTVRQFSPHL
Sbjct: 54  YRTNYFILIMFILGMGFLWKPVAIVAAFMTGLSIAFLNDSFAVTFNEKVTRTVRQFSPHL 113

Query: 69  AAKMRPPLTPVIRGRPSAKRAIYICGRPRWVFVLIFSCVSFILWYVSCGLLTVLWALAVG 128
           AAK+RPP+TPV+RGRPS+KR+I+ICGRPRWVFVL FS VS ILW  SC LLTVLWAL + 
Sbjct: 114 AAKLRPPITPVLRGRPSSKRSIHICGRPRWVFVLFFSAVSCILWLTSCSLLTVLWALLIA 173

Query: 129 LLATILHASFRTPNLKARLNTFREEFRAVWRNYSEL 164
           L AT+LHASFRTPNLKARLNTFREEFRAVWRNYSEL
Sbjct: 174 LFATVLHASFRTPNLKARLNTFREEFRAVWRNYSEL 209

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326497019|dbj|BAK02094.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  264 bits (675), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 128/156 (82%), Positives = 141/156 (90%)

Query: 9   YRTNYFIMITVILGLGFLRRPVAIIAALLTALSIAFLNDSFAGTFNEKVTRTVRQFSPHL 68
           YRTNYFI+I  ILGLGFL +PVAI+AA +T  SIAFLNDSFA TFNEKVTRTVRQFSPHL
Sbjct: 54  YRTNYFILIMFILGLGFLWKPVAILAAFMTGFSIAFLNDSFAVTFNEKVTRTVRQFSPHL 113

Query: 69  AAKMRPPLTPVIRGRPSAKRAIYICGRPRWVFVLIFSCVSFILWYVSCGLLTVLWALAVG 128
           AAKMRPP+TPVIRGRPS+KR+I+ICGRPRW+FVL+FS VS +LW  SC LLTVLWAL + 
Sbjct: 114 AAKMRPPITPVIRGRPSSKRSIHICGRPRWLFVLLFSAVSCMLWLTSCSLLTVLWALLIA 173

Query: 129 LLATILHASFRTPNLKARLNTFREEFRAVWRNYSEL 164
           LL T+LHASFRTPNLKARLNTFREEFRAVWRNYSEL
Sbjct: 174 LLTTVLHASFRTPNLKARLNTFREEFRAVWRNYSEL 209

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	164
TAIR|locus:2185198	209	PRA1.A1 "AT5G02040" [Arabidops	0.951	0.746	0.724	7.5e-57
TAIR|locus:1006230201	209	PRA1.A3 "AT3G11397" [Arabidops	0.951	0.746	0.641	7.2e-52
TAIR|locus:1005716110	209	PRA1.A2 "AT5G05987" [Arabidops	0.951	0.746	0.615	1.2e-51

TAIR|locus:2185198 PRA1.A1 "AT5G02040" [Arabidopsis thaliana (taxid:3702)]

 Score = 585 (211.0 bits), Expect = 7.5e-57, P = 7.5e-57
 Identities = 113/156 (72%), Positives = 124/156 (79%)

Query:     9 YRTNYFIMITVILGLGFLRRPVXXXXXXXXXXXXXFLNDSFAGTFNEKVTRTVRQFSPHL 68
             YRTNYFIMI VILGLG L RP+             FLNDSFAG+F+EK TRTVR+FSP L
Sbjct:    54 YRTNYFIMIVVILGLGVLTRPLAIFAALLTALSLAFLNDSFAGSFSEKATRTVRRFSPQL 113

Query:    69 AAKMRPPLTPVIRGRPSAKRAIYICGRPRWVFVLIFSCVSFILWYVSCGLLTVLWALAVG 128
             AAKMRPPLTPV RGRPS+KRAI++CG+PRWVFVL  S VSF LWY+S GLL V  AL + 
Sbjct:   114 AAKMRPPLTPVTRGRPSSKRAIHVCGQPRWVFVLTCSLVSFALWYISSGLLRVSVALLIA 173

Query:   129 LLATILHASFRTPNLKARLNTFREEFRAVWRNYSEL 164
              LATILHAS RTPNLKAR NTFREEFRAVWRNYSE+
Sbjct:   174 HLATILHASLRTPNLKARFNTFREEFRAVWRNYSEI 209

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=IDA

GO:0006869 "lipid transport" evidence=RCA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA

GO:0010351 "lithium ion transport" evidence=RCA

GO:0016558 "protein import into peroxisome matrix" evidence=RCA

TAIR|locus:1006230201 PRA1.A3 "AT3G11397" [Arabidopsis thaliana (taxid:3702)]

 Score = 538 (194.4 bits), Expect = 7.2e-52, P = 7.2e-52
 Identities = 100/156 (64%), Positives = 116/156 (74%)

Query:     9 YRTNYFIMITVILGLGFLRRPVXXXXXXXXXXXXXFLNDSFAGTFNEKVTRTVRQFSPHL 68
             YRTNYFI+   +LGL  + RP+             FLNDSFA TFNEK+ RT+R FSPHL
Sbjct:    54 YRTNYFILFVFVLGLALITRPLAILGAALTALSLAFLNDSFAATFNEKMIRTIRHFSPHL 113

Query:    69 AAKMRPPLTPVIRGRPSAKRAIYICGRPRWVFVLIFSCVSFILWYVSCGLLTVLWALAVG 128
             AAKMRPP  PVIRGR + ++ +YICG+PR VFVL+    SF+LW+ SCGLL VL+AL   
Sbjct:   114 AAKMRPPHMPVIRGRSATRKTVYICGQPRLVFVLLGLTASFVLWFTSCGLLWVLYALTTA 173

Query:   129 LLATILHASFRTPNLKARLNTFREEFRAVWRNYSEL 164
             LL  +LHAS RTPNLKARLNTFREEFRAVWRNYSEL
Sbjct:   174 LLMILLHASLRTPNLKARLNTFREEFRAVWRNYSEL 209

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0016020 "membrane" evidence=ISS

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=IDA

TAIR|locus:1005716110 PRA1.A2 "AT5G05987" [Arabidopsis thaliana (taxid:3702)]

 Score = 536 (193.7 bits), Expect = 1.2e-51, P = 1.2e-51
 Identities = 96/156 (61%), Positives = 116/156 (74%)

Query:     9 YRTNYFIMITVILGLGFLRRPVXXXXXXXXXXXXXFLNDSFAGTFNEKVTRTVRQFSPHL 68
             YRTNYFI++  +LGL  + RP+             FLNDSFA +FNEK  RT+R FSPH+
Sbjct:    54 YRTNYFILVIFVLGLALVTRPLALVGAALTALSIAFLNDSFAASFNEKFIRTIRHFSPHM 113

Query:    69 AAKMRPPLTPVIRGRPSAKRAIYICGRPRWVFVLIFSCVSFILWYVSCGLLTVLWALAVG 128
             AAKMRPP  PVIRGR +A++ +Y+CG+PRWVFV+ F   S ++W+ SCGLL VL+AL   
Sbjct:   114 AAKMRPPHMPVIRGRSTARKTVYVCGKPRWVFVITFLTASLVMWFSSCGLLWVLYALLTS 173

Query:   129 LLATILHASFRTPNLKARLNTFREEFRAVWRNYSEL 164
             L   I+HAS RTPNLKARLNTFREEFRAVWRNYSEL
Sbjct:   174 LAVIIVHASIRTPNLKARLNTFREEFRAVWRNYSEL 209


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.334   0.143   0.473    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      164       151   0.00097  104 3  11 21  0.46    30
                                                     30  0.40    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  582 (62 KB)
  Total size of DFA:  150 KB (2090 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  14.63u 0.12s 14.75t   Elapsed:  00:00:01
  Total cpu time:  14.63u 0.12s 14.75t   Elapsed:  00:00:01
  Start:  Fri May 10 15:31:44 2013   End:  Fri May 10 15:31:45 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pm.C_LG_VI0306 hypothetical protein (210 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	164
pfam03208	153	pfam03208, PRA1, PRA1 family protein	1e-14

>gnl|CDD|190565 pfam03208, PRA1, PRA1 family protein

 Score = 66.9 bits (164), Expect = 1e-14
 Identities = 31/139 (22%), Positives = 49/139 (35%), Gaps = 34/139 (24%)

Query: 9   YRTNYFIMITVILGLGFLRRPVAIIAALLTALSIAFLNDSFAGTFNEKVTRTVRQFSPHL 68
           ++TNY I++  +L L  L  P+++I  L+   +  FL        NE +    R FS   
Sbjct: 41  FQTNYAIVVLAVLLLSLLTNPLSLIVLLVLVAAWLFLYFLRP---NEPLVLFGRTFSDRQ 97

Query: 69  AAKMRPPLTPVIRGRPSAKRAIYICGRPRWVFVLIFSCVSFILWYVSCGLLTVLWALAVG 128
                                         V + +      +L+  S     +LW L  G
Sbjct: 98  ------------------------------VLIGLLVVSVPLLFLTS-AGSVLLWLLGAG 126

Query: 129 LLATILHASFRTPNLKARL 147
           LL  + HA+FR  N     
Sbjct: 127 LLLVLAHAAFRLRNDLFLD 145

This family includes the PRA1 (Prenylated rab acceptor) protein which is a Rab guanine dissociation inhibitor (GDI) displacement factor. This family also includes the glutamate transporter EAAC1 interacting protein GTRAP3-18. Length = 153

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	164
KOG4050	188	consensus Glutamate transporter EAAC1-interacting	99.97
PF03208	153	PRA1: PRA1 family protein; InterPro: IPR004895 Thi	99.86
KOG3142	187	consensus Prenylated rab acceptor 1 [Intracellular	99.83
COG5130	169	YIP3 Prenylated rab acceptor 1 and related protein	98.34

>KOG4050 consensus Glutamate transporter EAAC1-interacting protein GTRAP3-18 [Amino acid transport and metabolism; Signal transduction mechanisms]

Probab=99.97  E-value=1.9e-30  Score=208.67  Aligned_cols=119  Identities=25%  Similarity=0.376  Sum_probs=100.6

Q ss_pred             cchhhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhcccccccccccccccchhhhhhcCCCCCCcccCC
Q 031200            4 ACFCSYRTNYFIMITVILGLGFLRRPVAIIAALLTALSIAFLNDSFAGTFNEKVTRTVRQFSPHLAAKMRPPLTPVIRGR   83 (164)
Q Consensus         4 ~~LlYYqtNY~li~l~i~~l~~l~~P~~li~~~~~~~~~~fl~~~fa~~~~~~~~~~lr~f~p~~~~k~r~~~~~~~r~~   83 (164)
                      -||+||||||++.++..+.+.++.+|..+++++++.+.. +...+|+. .+++   .+|        |||+       ++
T Consensus        49 sNLLYyQTNYfv~~it~~~l~~f~sp~~iilglivvvlv-i~~liwa~-~~~a---~~k--------rmr~-------~h  108 (188)
T KOG4050|consen   49 SNLLYYQTNYFVTFITLFLLHGFISPQDIILGLIVVVLV-IGTLIWAA-SADA---NIK--------RMRT-------DH  108 (188)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHH-HHHHHHHH-hccH---HHH--------HHhh-------cC
Confidence            489999999999999999999999999998887654322 11224885 3443   455        4564       44


Q ss_pred             CCcchhheecCCCceeehHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhccCcchHHHhhhhhHhHH
Q 031200           84 PSAKRAIYICGRPRWVFVLIFSCVSFILWYVSCGLLTVLWALAVGLLATILHASFRTPNLKARLNTFREEFR  155 (164)
Q Consensus        84 p~~~~~v~i~~~~r~~vv~~l~~~s~~ll~l~~avl~~l~al~l~~~lvllHAslR~rNlKnkl~n~~E~fr  155 (164)
                      |             ++++.++++++|++++..|+++++.|++++|++++++|||+|+||+|||+||++|++-
T Consensus       109 p-------------~~~l~gvllv~yfli~v~~~vlv~~F~il~Pv~L~lvHASLRLRnikNkleN~iEsig  167 (188)
T KOG4050|consen  109 P-------------LVTLAGVLLVGYFLISVFGGVLVFAFAILFPVLLVLVHASLRLRNIKNKLENKIESIG  167 (188)
T ss_pred             c-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcC
Confidence            8             7789999999999999999999999999999999999999999999999999999973

>PF03208 PRA1: PRA1 family protein; InterPro: IPR004895 This family includes yeast hypothetical proteins and the uncharacterised rat prenylated rab acceptor protein PRA1

Probab=99.86  E-value=3.1e-21  Score=149.68  Aligned_cols=118  Identities=29%  Similarity=0.488  Sum_probs=94.8

Q ss_pred             cchhhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhcccccccccccccccchhhhhhcCCCCCCcccCC
Q 031200            4 ACFCSYRTNYFIMITVILGLGFLRRPVAIIAALLTALSIAFLNDSFAGTFNEKVTRTVRQFSPHLAAKMRPPLTPVIRGR   83 (164)
Q Consensus         4 ~~LlYYqtNY~li~l~i~~l~~l~~P~~li~~~~~~~~~~fl~~~fa~~~~~~~~~~lr~f~p~~~~k~r~~~~~~~r~~   83 (164)
                      -|+.|||+||++++.+++++++++||..++++++++.+|.+.++...  .++    ++.                 ..|.
T Consensus        35 ~Nl~~F~~NY~~i~~~~~~~~ll~~P~~l~~~~~~~~~~~~~~~~~~--~~~----~~~-----------------~~~~   91 (153)
T PF03208_consen   35 RNLSYFQTNYLLIFLLLFLIFLLTNPFFLLVLLLVVALWAFIYKSRK--END----PIV-----------------IGGR   91 (153)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc--cCc----chh-----------------ccCc
Confidence            38999999999999999999999999999999888888877731111  011    121                 1222


Q ss_pred             CCcchhheecCCCceeehHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhccCcchHHHhhhhhHhH
Q 031200           84 PSAKRAIYICGRPRWVFVLIFSCVSFILWYVSCGLLTVLWALAVGLLATILHASFRTPNLKARLNTFREEF  154 (164)
Q Consensus        84 p~~~~~v~i~~~~r~~vv~~l~~~s~~ll~l~~avl~~l~al~l~~~lvllHAslR~rNlKnkl~n~~E~f  154 (164)
                      ..          ++.....++.++++++++.++++.+++++++++++++++||+||.||+|+|.||+.|+|
T Consensus        92 ~~----------~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~~~~lvl~HA~~r~~~~~~~~e~~~~~~  152 (153)
T PF03208_consen   92 KI----------SPRQVLLALLIVSILLLFFTSAGLTLFWSLGASVLLVLLHASFREPDLKNKEENEIESF  152 (153)
T ss_pred             cc----------CHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhHHhcc
Confidence            22          22335678888888999999999999999999999999999999999999999999987

>KOG3142 consensus Prenylated rab acceptor 1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.83  E-value=2.4e-20  Score=152.76  Aligned_cols=101  Identities=25%  Similarity=0.569  Sum_probs=90.1

Q ss_pred             cchhhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhcccccccccccccccchhhhhhcCCCCCCcccCC
Q 031200            4 ACFCSYRTNYFIMITVILGLGFLRRPVAIIAALLTALSIAFLNDSFAGTFNEKVTRTVRQFSPHLAAKMRPPLTPVIRGR   83 (164)
Q Consensus         4 ~~LlYYqtNY~li~l~i~~l~~l~~P~~li~~~~~~~~~~fl~~~fa~~~~~~~~~~lr~f~p~~~~k~r~~~~~~~r~~   83 (164)
                      .|+-|||+||.++++.+.++++++||++|++++..+++|.++   |+             +                ||+
T Consensus        64 ~Nl~yF~~NY~~iv~~~~~~sLi~~P~~Livl~~lv~~w~~L---Y~-------------~----------------rd~  111 (187)
T KOG3142|consen   64 RNLSYFRVNYVIIVAILLFLSLITHPLSLIVLLALVAAWLFL---YF-------------L----------------RDE  111 (187)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhe---ee-------------e----------------cCC
Confidence            589999999999999999999999999999999999999998   55             1                333


Q ss_pred             CCcchhheecCC--CceeehHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhccCc
Q 031200           84 PSAKRAIYICGR--PRWVFVLIFSCVSFILWYVSCGLLTVLWALAVGLLATILHASFRTP  141 (164)
Q Consensus        84 p~~~~~v~i~~~--~r~~vv~~l~~~s~~ll~l~~avl~~l~al~l~~~lvllHAslR~r  141 (164)
                      |     ++++|+  |++.++++++++++.+++++++..+++|++..+++++++||+||.+
T Consensus       112 p-----Lvlfgr~i~d~~~l~~L~~~ti~~lflt~~~~~l~~~l~~g~~vv~~Haafr~~  166 (187)
T KOG3142|consen  112 P-----LVLFGRQISDREVLIGLVLITIPVLFLTSAGSNLLWALGAGLVVVLIHAAFRNT  166 (187)
T ss_pred             C-----eEEeeEEecCcchhhhHHHHHHHHHHHhhHHHHHHHHHHHhHHHHHhHHHHhCh
Confidence            4     555555  5666899999999999999999999999999999999999999964

>COG5130 YIP3 Prenylated rab acceptor 1 and related proteins [Intracellular trafficking and secretion / Signal transduction mechanisms]

Probab=98.34  E-value=8e-07  Score=71.22  Aligned_cols=103  Identities=23%  Similarity=0.462  Sum_probs=80.7

Q ss_pred             ccchhhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhcccccccccccccccchhhhhhcCCCCCCcccC
Q 031200            3 FACFCSYRTNYFIMITVILGLGFLRRPVAIIAALLTALSIAFLNDSFAGTFNEKVTRTVRQFSPHLAAKMRPPLTPVIRG   82 (164)
Q Consensus         3 ~~~LlYYqtNY~li~l~i~~l~~l~~P~~li~~~~~~~~~~fl~~~fa~~~~~~~~~~lr~f~p~~~~k~r~~~~~~~r~   82 (164)
                      ++|+=||..||.+++...-++.+++||.-+++..+++.+.      |-          +|+.                ||
T Consensus        55 ~~Nl~rFssnYlaiia~l~iy~ll~nllLlivIgivvaGv------yg----------i~kl----------------~g  102 (169)
T COG5130          55 FANLDRFSSNYLAIIAILTIYYLLYNLLLLIVIGIVVAGV------YG----------IRKL----------------RG  102 (169)
T ss_pred             HhhHHHHhhhHHHHHHHHHHHHHHHhHHHHHHHhhhhhee------ee----------hhhc----------------cc
Confidence            6899999999999999999999999998777766555443      22          4444                33


Q ss_pred             CCCcchhheecCC---CceeehHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhccCcch
Q 031200           83 RPSAKRAIYICGR---PRWVFVLIFSCVSFILWYVSCGLLTVLWALAVGLLATILHASFRTPNL  143 (164)
Q Consensus        83 ~p~~~~~v~i~~~---~r~~vv~~l~~~s~~ll~l~~avl~~l~al~l~~~lvllHAslR~rNl  143 (164)
                      +|.      +|..   +|..+.++++.+..++-++.+.+.+++|-++.+...++-||++=.+-+
T Consensus       103 ~~l------v~~~~~~~~~~ly~glvcvlip~gffaspI~tllwl~gas~v~vfgHAal~e~p~  160 (169)
T COG5130         103 RPL------VCNIELEPRSVLYAGLVCVLIPFGFFASPIVTLLWLSGASGVVVFGHAALLEEPL  160 (169)
T ss_pred             Ccc------ccccceeecchhhhhHHHHHHHHHHHHhHHHHHHHHHhcceeEeechHHHcCCcc
Confidence            341      1211   556677788888899999999999999999999999999999976654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00