Citrus Sinensis ID: 031276

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160--
Protein Sequence
MSLAPSVTRLHSPFLCCPLNKLSSSATTVSLSQRNQRSSAPYPCIRAELDQNTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSFCMGTGSVTVELGGDEREFSKCINCDGVGSLTCTTCQGTGIQPRYLDRREFKDDD
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEEEEEEEccEEEEEEEcccccccccccccccccccccccccccccccEEEcccEEEEEEcccEEEEEccccccccccEEEcccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccHcHccccccccccccEEEEEccccEEEEEEEEEEEEEEEcccEEEEEEcccccccccccccHHHHHHHHcccHHEEEEEEEccccEEEEEEcccccEccEEEEcccccEEEEEccccccccccccccHHccccc
Coil and Loop (DISEMBL)
mslapsvtrlhspflccplnklsssattvslsqrnqrssapypciraeldqnTVVAISVGLVSVAVGIGIPIfyetqidnaydfpifgagqarkysamlplqwlrcsfcmgtgsvtvelggderefskcincdgvgsltcttcqgtgiqpryldrrefkddd
Flexible Loop (DISEMBL)
mslapsvtrlhspflcCPLNKLSSSATtvslsqrnqrssapyPCIRAELDQNTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSFCMGTGSVTVELGGDEREFSKCINCdgvgsltcttcqgtgiqpryldrrefkddd
Low Complexity Region (SEG)
MSLAPSVTRLHSPFLCCPLNKLSSSATTVSLSQRNQRSSAPYPCIRAELDQNTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSFCMGTGSVTVELGGDEREFSKCINCDGVGSLTCTTCQGTGIQPRYLDRREFKDDD
Disordered region (IsUnstruct)
**********HSPFLCCPLN*********************YPCIRAELDQNTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSFCMGTGSVTVELGGDEREFSKCINCDGVGSLTCTTCQGTGIQPRYL*********
Disordered Region (DISOPRED)
**********HSPFLCCPLNKL****************************QNTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIF**********MLPLQWLRCSFCMGTGSVTVELGGDEREFSKCINCDGVGSLTCTTCQGTGIQPRYL*********
Disordered Region (DISEMBL)
MSLAPSVTRLHSPFLCCPLNKLS****************APYPCIRAELDQNTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSFCMGTGSVTVELGGDEREFSKCINCDGVGSLTCTTCQGTGIQPRYLDRREFKDDD
Disordered Region (DISPRO)
***************************************APYPCIRAELDQNTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSFCMGTGSVTVELGGDEREFSKCINCDGVGSLTCTTCQGTGIQPRYLDRRE*****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSLAPSVTRLHSPFLCCPLNKLSSSATTVSLSQRNQRSSAPYPCIRAELDQNTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSFCMGTGSVTVELGGDEREFSKCINCDGVGSLTCTTCQGTGIQPRYLDRREFKDDD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	162	2.2.26 [Sep-21-2011]
Q8GSJ6	154	Protein disulfide-isomera	yes	no	0.876	0.922	0.610	1e-47

>sp|Q8GSJ6|LQY1_ARATH Protein disulfide-isomerase LQY1 OS=Arabidopsis thaliana GN=LQY1 PE=1 SV=1

 Score =  188 bits (477), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 102/167 (61%), Positives = 115/167 (68%), Gaps = 25/167 (14%)

Query: 4   APSVTRLHSPFLCCPLNKLSSSATTVSLSQRNQRS-SAPYPCIRAELDQNTVVAISVGLV 62
           APS  RLHSPF+ CP+N      T  S S RN RS S  YP I+AELD NTVVAISVG+ 
Sbjct: 5   APSPPRLHSPFIHCPIN-----FTPSSFSARNLRSPSTSYPRIKAELDPNTVVAISVGVA 59

Query: 63  SVAVGIGIPIFYETQIDNAYD-------FPIFGAGQARKYSAMLPLQWLRCSFCMGTGSV 115
           SVA+GIGIP+FYETQIDNA         FP  G G  +            C  C+G+G+V
Sbjct: 60  SVALGIGIPVFYETQIDNAAKRENTQPCFPCNGTGAQK------------CRLCVGSGNV 107

Query: 116 TVELGGDEREFSKCINCDGVGSLTCTTCQGTGIQPRYLDRREFKDDD 162
           TVELGG E+E S CINCDG GSLTCTTCQG+G+QPRYLDRREFKDDD
Sbjct: 108 TVELGGGEKEVSNCINCDGAGSLTCTTCQGSGVQPRYLDRREFKDDD 154

Protein disulfide-isomerase probably involved in maintaining photosystem II (PSII) activity under high light by regulating repair and reassembly of PSII complexes.
Arabidopsis thaliana (taxid: 3702)
EC: 5EC: .EC: 3EC: .EC: 4EC: .EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	162
255538908	156	conserved hypothetical protein [Ricinus	0.913	0.948	0.676	2e-55
224062017	159	predicted protein [Populus trichocarpa]	0.925	0.943	0.637	3e-52
449437216	157	PREDICTED: protein disulfide-isomerase L	0.919	0.949	0.647	4e-52
118489193	159	unknown [Populus trichocarpa x Populus d	0.925	0.943	0.631	5e-51
351727697	157	uncharacterized protein LOC100305711 [Gl	0.882	0.910	0.637	8e-48
15222330	154	DnaJ/Hsp40 cysteine-rich domain-containi	0.876	0.922	0.610	7e-46
224085841	175	predicted protein [Populus trichocarpa]	0.888	0.822	0.614	8e-46
388492084	156	unknown [Lotus japonicus]	0.888	0.923	0.586	4e-45
357438369	157	hypothetical protein MTR_1g024840 [Medic	0.895	0.923	0.581	9e-43
9369362	199	F10A5.12 [Arabidopsis thaliana]	0.839	0.683	0.6	5e-42

>gi|255538908|ref|XP_002510519.1| conserved hypothetical protein [Ricinus communis] gi|223551220|gb|EEF52706.1| conserved hypothetical protein [Ricinus communis]

 Score =  219 bits (559), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 115/170 (67%), Positives = 129/170 (75%), Gaps = 22/170 (12%)

Query: 1   MSLAPSVTRLHSPFLCCPLNKLSSSATTVSLSQRNQRSSAPYPCIRA-ELDQNTVVAISV 59
           M LAPS+ RLHSPFLCCPL   + +A+  SL  RNQRSS+ YPCIRA +LDQNTVVAISV
Sbjct: 1   MPLAPSIPRLHSPFLCCPLKTSTLTASCKSL--RNQRSSSSYPCIRAIDLDQNTVVAISV 58

Query: 60  GLVSVAVGIGIPIFYETQIDNAYD-------FPIFGAGQARKYSAMLPLQWLRCSFCMGT 112
           G+VS+A+GIGIP+FYETQIDNA         FP  G+G  R            C FC GT
Sbjct: 59  GVVSIAIGIGIPVFYETQIDNAAKRENTQPCFPCNGSGAQR------------CRFCTGT 106

Query: 113 GSVTVELGGDEREFSKCINCDGVGSLTCTTCQGTGIQPRYLDRREFKDDD 162
           GSVTVELGG+E+E S+CINCDG GSLTCTTCQGTGIQPRYLDRREFKDDD
Sbjct: 107 GSVTVELGGEEKEVSRCINCDGAGSLTCTTCQGTGIQPRYLDRREFKDDD 156

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224062017|ref|XP_002300713.1| predicted protein [Populus trichocarpa] gi|222842439|gb|EEE79986.1| predicted protein [Populus trichocarpa]

 Score =  209 bits (533), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 109/171 (63%), Positives = 130/171 (76%), Gaps = 21/171 (12%)

Query: 1   MSLAPSVTRLHSPFLCCPLNKLSSSATTVSLSQRN-QRSSAPYPCIRA-ELDQNTVVAIS 58
           M +APS+ RLHSPFLCCPLN +SSS ++   ++ + QRS   YPCIRA +LDQNT+VAIS
Sbjct: 1   MPVAPSIPRLHSPFLCCPLNNISSSLSSFKSARHHPQRSPVSYPCIRAIDLDQNTIVAIS 60

Query: 59  VGLVSVAVGIGIPIFYETQIDNAYD-------FPIFGAGQARKYSAMLPLQWLRCSFCMG 111
           VG+VS+A GIGIP+FYE+QIDNA         FP  G+G  +            C FC+G
Sbjct: 61  VGVVSIAAGIGIPVFYESQIDNAAKRDNTQPCFPCSGSGAQK------------CRFCLG 108

Query: 112 TGSVTVELGGDEREFSKCINCDGVGSLTCTTCQGTGIQPRYLDRREFKDDD 162
           TGSVTVELGGDE+E S+CINCDG+GSLTCTTCQG+GIQPRYLDRREFKDDD
Sbjct: 109 TGSVTVELGGDEKEVSRCINCDGIGSLTCTTCQGSGIQPRYLDRREFKDDD 159

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449437216|ref|XP_004136388.1| PREDICTED: protein disulfide-isomerase LQY1-like [Cucumis sativus] gi|449505746|ref|XP_004162556.1| PREDICTED: protein disulfide-isomerase LQY1-like [Cucumis sativus]

 Score =  209 bits (531), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 110/170 (64%), Positives = 129/170 (75%), Gaps = 21/170 (12%)

Query: 1   MSLAPSVTRLHSPFLCCPLNKLSSSATTVSLSQRNQRSSAPYPCIRA-ELDQNTVVAISV 59
           M++APS++RLHSPFL CPL    S++ +V+ S  NQRS   YP IRA +LDQNTVVA+SV
Sbjct: 1   MTVAPSLSRLHSPFLYCPLKPTPSTSLSVTFSG-NQRSPPSYPRIRAIDLDQNTVVALSV 59

Query: 60  GLVSVAVGIGIPIFYETQIDNAYD-------FPIFGAGQARKYSAMLPLQWLRCSFCMGT 112
           GLVSVA+GIGIP+FYETQIDNA         FP  G+G  R            C FCMGT
Sbjct: 60  GLVSVAIGIGIPVFYETQIDNAAKRENTQPCFPCSGSGAQR------------CRFCMGT 107

Query: 113 GSVTVELGGDEREFSKCINCDGVGSLTCTTCQGTGIQPRYLDRREFKDDD 162
           G+VTVELGGD++E S+CINCDGVG+LTCTTCQG+GIQPRYLDRREFKDDD
Sbjct: 108 GNVTVELGGDDKEVSRCINCDGVGTLTCTTCQGSGIQPRYLDRREFKDDD 157

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118489193|gb|ABK96403.1| unknown [Populus trichocarpa x Populus deltoides]

 Score =  205 bits (521), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 108/171 (63%), Positives = 129/171 (75%), Gaps = 21/171 (12%)

Query: 1   MSLAPSVTRLHSPFLCCPLNKLSSSATTVSLSQRN-QRSSAPYPCIRA-ELDQNTVVAIS 58
           M +APS+ RLHSPFL CPLN +SSS ++   ++ + QRS   YPCIRA +LDQNT+VAIS
Sbjct: 1   MPVAPSIPRLHSPFLRCPLNNISSSLSSFKSARHHPQRSPVSYPCIRAIDLDQNTIVAIS 60

Query: 59  VGLVSVAVGIGIPIFYETQIDNAYD-------FPIFGAGQARKYSAMLPLQWLRCSFCMG 111
           VG+VS+A GIGIP+FYE+QIDNA         FP  G+G  +            C FC+G
Sbjct: 61  VGVVSIAAGIGIPVFYESQIDNAAKRDNTQPCFPCSGSGAQK------------CRFCLG 108

Query: 112 TGSVTVELGGDEREFSKCINCDGVGSLTCTTCQGTGIQPRYLDRREFKDDD 162
           TGSVTVELGGDE+E S+CINCDG+GSLTCTTCQG+GIQPRYLDRREFKDDD
Sbjct: 109 TGSVTVELGGDEKEVSRCINCDGIGSLTCTTCQGSGIQPRYLDRREFKDDD 159

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351727697|ref|NP_001235634.1| uncharacterized protein LOC100305711 [Glycine max] gi|255626385|gb|ACU13537.1| unknown [Glycine max]

 Score =  194 bits (494), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 109/171 (63%), Positives = 125/171 (73%), Gaps = 28/171 (16%)

Query: 3   LAPSVT--RLHSPFLCCPL-NKLSSSATTVSLSQRNQRSSAPYPCIRA-ELDQNTVVAIS 58
           L+PS++  +LHS FLCCPL +KLSSSAT      R Q+    YP IRA +LDQNTVVAIS
Sbjct: 4   LSPSLSLPKLHSSFLCCPLKSKLSSSAT-----NRIQQKPTSYPRIRALDLDQNTVVAIS 58

Query: 59  VGLVSVAVGIGIPIFYETQIDNAYD-------FPIFGAGQARKYSAMLPLQWLRCSFCMG 111
           VGLVSVAVGIGIP+FYETQIDNA         FP  G+G              +C FC+G
Sbjct: 59  VGLVSVAVGIGIPVFYETQIDNAAKRDNTQPCFPCNGSGSQ------------KCRFCLG 106

Query: 112 TGSVTVELGGDEREFSKCINCDGVGSLTCTTCQGTGIQPRYLDRREFKDDD 162
           +G+VTVELGG E+E S+CINCD VGSLTCTTCQG+GIQPRYLDRREFKDDD
Sbjct: 107 SGNVTVELGGGEKEVSRCINCDAVGSLTCTTCQGSGIQPRYLDRREFKDDD 157

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15222330|ref|NP_177698.1| DnaJ/Hsp40 cysteine-rich domain-containing protein [Arabidopsis thaliana] gi|75150317|sp|Q8GSJ6.1|LQY1_ARATH RecName: Full=Protein disulfide-isomerase LQY1; AltName: Full=Protein LOW QUANTUM YIELD OF PHOTOSYSTEM II 1; Flags: Precursor gi|26450801|dbj|BAC42509.1| unknown protein [Arabidopsis thaliana] gi|27311545|gb|AAO00738.1| unknown protein [Arabidopsis thaliana] gi|30102874|gb|AAP21355.1| At1g75690 [Arabidopsis thaliana] gi|332197625|gb|AEE35746.1| DnaJ/Hsp40 cysteine-rich domain-containing protein [Arabidopsis thaliana]

 Score =  188 bits (477), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 102/167 (61%), Positives = 115/167 (68%), Gaps = 25/167 (14%)

Query: 4   APSVTRLHSPFLCCPLNKLSSSATTVSLSQRNQRS-SAPYPCIRAELDQNTVVAISVGLV 62
           APS  RLHSPF+ CP+N      T  S S RN RS S  YP I+AELD NTVVAISVG+ 
Sbjct: 5   APSPPRLHSPFIHCPIN-----FTPSSFSARNLRSPSTSYPRIKAELDPNTVVAISVGVA 59

Query: 63  SVAVGIGIPIFYETQIDNAYD-------FPIFGAGQARKYSAMLPLQWLRCSFCMGTGSV 115
           SVA+GIGIP+FYETQIDNA         FP  G G  +            C  C+G+G+V
Sbjct: 60  SVALGIGIPVFYETQIDNAAKRENTQPCFPCNGTGAQK------------CRLCVGSGNV 107

Query: 116 TVELGGDEREFSKCINCDGVGSLTCTTCQGTGIQPRYLDRREFKDDD 162
           TVELGG E+E S CINCDG GSLTCTTCQG+G+QPRYLDRREFKDDD
Sbjct: 108 TVELGGGEKEVSNCINCDGAGSLTCTTCQGSGVQPRYLDRREFKDDD 154

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224085841|ref|XP_002307712.1| predicted protein [Populus trichocarpa] gi|222857161|gb|EEE94708.1| predicted protein [Populus trichocarpa]

 Score =  188 bits (477), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 102/166 (61%), Positives = 122/166 (73%), Gaps = 22/166 (13%)

Query: 1   MSLAPSVTRLHSPFLCCPLNKLSSSATTVSLSQRN--QRSSAPYPCIRA-ELDQNTVVAI 57
           M +APS+ RLHSPFLCC L ++SSS+ +   S RN  QRS   +PCIRA +LDQNT+VAI
Sbjct: 1   MPVAPSIPRLHSPFLCCHLQEISSSSLSSFKSPRNNHQRSPVSHPCIRAVDLDQNTIVAI 60

Query: 58  SVGLVSVAVGIGIPIFYETQIDNAYD-------FPIFGAGQARKYSAMLPLQWLRCSFCM 110
           SVG VS+AVGIGIP+FYE+QIDNA         FP  G+G  +            C FC+
Sbjct: 61  SVGAVSIAVGIGIPVFYESQIDNAAKRENTQPCFPCSGSGAQK------------CRFCL 108

Query: 111 GTGSVTVELGGDEREFSKCINCDGVGSLTCTTCQGTGIQPRYLDRR 156
           GTGSVT+ELGGD++E S CINC+GVGSLTCTTCQG+GIQPRYLDRR
Sbjct: 109 GTGSVTLELGGDDKEVSPCINCEGVGSLTCTTCQGSGIQPRYLDRR 154

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388492084|gb|AFK34108.1| unknown [Lotus japonicus]

 Score =  186 bits (471), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 102/174 (58%), Positives = 120/174 (68%), Gaps = 30/174 (17%)

Query: 1   MSLAPSVT--RLHSPFLCCPLNKLSSSATTVSLSQRNQRSSAP--YPCIRA-ELDQNTVV 55
           M+LAPS++    HS FLCCPL +        S S RN+    P  YP IRA E DQNTV+
Sbjct: 1   MTLAPSLSLPHFHSSFLCCPLKQ------PFSPSSRNRIQPKPTSYPRIRALEFDQNTVI 54

Query: 56  AISVGLVSVAVGIGIPIFYETQIDNAYD-------FPIFGAGQARKYSAMLPLQWLRCSF 108
           AI+VG+ SVA+GIGIP+FYE+QIDNA         FP  G+G  +            C F
Sbjct: 55  AITVGVASVAIGIGIPVFYESQIDNAAKRDNTQPCFPCSGSGAQK------------CRF 102

Query: 109 CMGTGSVTVELGGDEREFSKCINCDGVGSLTCTTCQGTGIQPRYLDRREFKDDD 162
           C+GTG+VTVELGGDE+E S+CINCDG GSLTCTTCQG+GIQPRYLDRREFKDDD
Sbjct: 103 CLGTGNVTVELGGDEKEVSRCINCDGAGSLTCTTCQGSGIQPRYLDRREFKDDD 156

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357438369|ref|XP_003589460.1| hypothetical protein MTR_1g024840 [Medicago truncatula] gi|355478508|gb|AES59711.1| hypothetical protein MTR_1g024840 [Medicago truncatula]

 Score =  178 bits (451), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 100/172 (58%), Positives = 118/172 (68%), Gaps = 27/172 (15%)

Query: 1   MSLAPSVTRLHSPFLCCPLNKLSSSATTVSLSQRNQRSSAP--YPCIRA-ELDQNTVVAI 57
           +S + S+ +LHS FL  PL  LS++        RN+    P  YP IRA ELDQNTVVAI
Sbjct: 3   ISCSLSLPQLHSSFLSSPLKSLSTTPLA-----RNKFQPKPTFYPRIRALELDQNTVVAI 57

Query: 58  SVGLVSVAVGIGIPIFYETQIDNAYD-------FPIFGAGQARKYSAMLPLQWLRCSFCM 110
           +VG++SVAVGIGIP+FYE+QIDNA         FP  G+G  +            C FC+
Sbjct: 58  TVGVLSVAVGIGIPVFYESQIDNAAKRDNTQPCFPCNGSGAQK------------CRFCL 105

Query: 111 GTGSVTVELGGDEREFSKCINCDGVGSLTCTTCQGTGIQPRYLDRREFKDDD 162
           GTG+VTVELGG E E S+CINCDG GSLTCTTCQG+GIQPRYLDRREFKDDD
Sbjct: 106 GTGNVTVELGGAETEVSRCINCDGAGSLTCTTCQGSGIQPRYLDRREFKDDD 157

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|9369362|gb|AAF87111.1|AC006434_7 F10A5.12 [Arabidopsis thaliana]

 Score =  175 bits (444), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 96/160 (60%), Positives = 108/160 (67%), Gaps = 24/160 (15%)

Query: 4   APSVTRLHSPFLCCPLNKLSSSATTVSLSQRNQRS-SAPYPCIRAELDQNTVVAISVGLV 62
           APS  RLHSPF+ CP+N      T  S S RN RS S  YP I+AELD NTVVAISVG+ 
Sbjct: 5   APSPPRLHSPFIHCPIN-----FTPSSFSARNLRSPSTSYPRIKAELDPNTVVAISVGVA 59

Query: 63  SVAVGIGIPIFYETQIDNAYD-------FPIFGAGQARKYSAMLPLQWLRCSFCMGTGSV 115
           SVA+GIGIP+FYETQIDNA         FP  G G   K           C  C+G+G+V
Sbjct: 60  SVALGIGIPVFYETQIDNAAKRENTQPCFPCNGTGAPEK-----------CRLCVGSGNV 108

Query: 116 TVELGGDEREFSKCINCDGVGSLTCTTCQGTGIQPRYLDR 155
           TVELGG E+E S CINCDG GSLTCTTCQG+G+QPRYLDR
Sbjct: 109 TVELGGGEKEVSNCINCDGAGSLTCTTCQGSGVQPRYLDR 148

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	162
TAIR|locus:2005585	154	LQY1 "LOW QUANTUM YIELD OF PHO	0.876	0.922	0.622	4.4e-45

TAIR|locus:2005585 LQY1 "LOW QUANTUM YIELD OF PHOTOSYSTEM II 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 474 (171.9 bits), Expect = 4.4e-45, P = 4.4e-45
 Identities = 104/167 (62%), Positives = 117/167 (70%)

Query:     4 APSVTRLHSPFLCCPLNKLSSSATTVSLSQRNQRS-SAPYPCIRAELDQNTVVAISVGLV 62
             APS  RLHSPF+ CP+N      T  S S RN RS S  YP I+AELD NTVVAISVG+ 
Sbjct:     5 APSPPRLHSPFIHCPIN-----FTPSSFSARNLRSPSTSYPRIKAELDPNTVVAISVGVA 59

Query:    63 SVAVGIGIPIFYETQIDNAYD-------FPIFGAGQARKYSAMLPLQWLRCSFCMGTGSV 115
             SVA+GIGIP+FYETQIDNA         FP  G G A+K           C  C+G+G+V
Sbjct:    60 SVALGIGIPVFYETQIDNAAKRENTQPCFPCNGTG-AQK-----------CRLCVGSGNV 107

Query:   116 TVELGGDEREFSKCINCDGVGSLTCTTCQGTGIQPRYLDRREFKDDD 162
             TVELGG E+E S CINCDG GSLTCTTCQG+G+QPRYLDRREFKDDD
Sbjct:   108 TVELGGGEKEVSNCINCDGAGSLTCTTCQGSGVQPRYLDRREFKDDD 154


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.136   0.421    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      162       162   0.00079  107 3  11 22  0.49    31
                                                     30  0.44    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  584 (62 KB)
  Total size of DFA:  150 KB (2091 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  16.66u 0.13s 16.79t   Elapsed:  00:00:01
  Total cpu time:  16.66u 0.13s 16.79t   Elapsed:  00:00:01
  Start:  Fri May 10 20:03:52 2013   End:  Fri May 10 20:03:53 2013

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0003756 "protein disulfide isomerase activity" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0010206 "photosystem II repair" evidence=IMP

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0009657 "plastid organization" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8GSJ6	LQY1_ARATH	5, ., 3, ., 4, ., 1	0.6107	0.8765	0.9220	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	162
PLN03165	111	PLN03165, PLN03165, chaperone protein dnaJ-related	4e-57
PRK14280	376	PRK14280, PRK14280, chaperone protein DnaJ; Provis	0.001

>gnl|CDD|178709 PLN03165, PLN03165, chaperone protein dnaJ-related; Provisional

 Score =  173 bits (441), Expect = 4e-57
 Identities = 81/123 (65%), Positives = 91/123 (73%), Gaps = 19/123 (15%)

Query: 47  AELDQNTVVAISVGLVSVAVGIGIPIFYETQIDNAYD-------FPIFGAGQARKYSAML 99
            +LDQNT+VAISVG+VS+AVGIGIP+FYETQIDNA         FP  G G         
Sbjct: 1   VDLDQNTIVAISVGVVSIAVGIGIPVFYETQIDNAAKRENTQPCFPCSGTGAQV------ 54

Query: 100 PLQWLRCSFCMGTGSVTVELGGDEREFSKCINCDGVGSLTCTTCQGTGIQPRYLDRREFK 159
                 C FC+G+G+VTVELGG E+E SKCINCDG GSLTCTTCQG+GIQPRYLDRREFK
Sbjct: 55  ------CRFCVGSGNVTVELGGGEKEVSKCINCDGAGSLTCTTCQGSGIQPRYLDRREFK 108

Query: 160 DDD 162
           DDD
Sbjct: 109 DDD 111

Length = 111

>gnl|CDD|237656 PRK14280, PRK14280, chaperone protein DnaJ; Provisional

 Score = 37.8 bits (88), Expect = 0.001
 Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 6/48 (12%)

Query: 106 CSFCMGTGSVTVELG---GDEREFSKCINCDGVGSL---TCTTCQGTG 147
           CS C G+G V+VE     G       C +C+G G      C TC G G
Sbjct: 163 CSHCGGSGQVSVEQNTPFGRVVNRQTCPHCNGTGQEIKEKCPTCHGKG 210

Length = 376

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	162
PLN03165	111	chaperone protein dnaJ-related; Provisional	99.92
COG0484	371	DnaJ DnaJ-class molecular chaperone with C-termina	99.76
PRK14279	392	chaperone protein DnaJ; Provisional	99.56
PRK14284	391	chaperone protein DnaJ; Provisional	99.55
PRK14298	377	chaperone protein DnaJ; Provisional	99.55
PRK14286	372	chaperone protein DnaJ; Provisional	99.55
PRK14282	369	chaperone protein DnaJ; Provisional	99.55
PRK14295	389	chaperone protein DnaJ; Provisional	99.55
PRK14278	378	chaperone protein DnaJ; Provisional	99.54
PRK14285	365	chaperone protein DnaJ; Provisional	99.54
PRK14276	380	chaperone protein DnaJ; Provisional	99.53
PRK14280	376	chaperone protein DnaJ; Provisional	99.53
PRK14301	373	chaperone protein DnaJ; Provisional	99.53
PRK14296	372	chaperone protein DnaJ; Provisional	99.52
PRK14300	372	chaperone protein DnaJ; Provisional	99.52
PRK10767	371	chaperone protein DnaJ; Provisional	99.51
PRK14297	380	chaperone protein DnaJ; Provisional	99.51
PRK14294	366	chaperone protein DnaJ; Provisional	99.5
PRK14287	371	chaperone protein DnaJ; Provisional	99.5
PRK14291	382	chaperone protein DnaJ; Provisional	99.49
PRK14288	369	chaperone protein DnaJ; Provisional	99.49
PRK14277	386	chaperone protein DnaJ; Provisional	99.49
PRK14281	397	chaperone protein DnaJ; Provisional	99.49
TIGR02349	354	DnaJ_bact chaperone protein DnaJ. This model repre	99.47
PRK14289	386	chaperone protein DnaJ; Provisional	99.45
PRK14283	378	chaperone protein DnaJ; Provisional	99.41
PRK14290	365	chaperone protein DnaJ; Provisional	99.41
PRK14293	374	chaperone protein DnaJ; Provisional	99.4
PTZ00037	421	DnaJ_C chaperone protein; Provisional	99.4
PRK14292	371	chaperone protein DnaJ; Provisional	99.36
PF00684	66	DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR0	99.26
KOG0712	337	consensus Molecular chaperone (DnaJ superfamily) [	98.81
KOG2813	406	consensus Predicted molecular chaperone, contains	98.7
KOG0715	288	consensus Molecular chaperone (DnaJ superfamily) [	98.39
KOG2813	406	consensus Predicted molecular chaperone, contains	98.02
COG1107	715	Archaea-specific RecJ-like exonuclease, contains D	97.88
PF00684	66	DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR0	97.75
PLN03165	111	chaperone protein dnaJ-related; Provisional	97.61
COG0484	371	DnaJ DnaJ-class molecular chaperone with C-termina	97.39
PRK14279	392	chaperone protein DnaJ; Provisional	96.85
PRK14296	372	chaperone protein DnaJ; Provisional	96.78
PRK14284	391	chaperone protein DnaJ; Provisional	96.69
PRK14300	372	chaperone protein DnaJ; Provisional	96.59
PRK14298	377	chaperone protein DnaJ; Provisional	96.59
KOG2824	281	consensus Glutaredoxin-related protein [Posttransl	96.59
PRK10767	371	chaperone protein DnaJ; Provisional	96.56
PRK14285	365	chaperone protein DnaJ; Provisional	96.56
PRK14286	372	chaperone protein DnaJ; Provisional	96.55
COG1107	715	Archaea-specific RecJ-like exonuclease, contains D	96.55
PRK14301	373	chaperone protein DnaJ; Provisional	96.54
PRK14278	378	chaperone protein DnaJ; Provisional	96.52
PRK14297	380	chaperone protein DnaJ; Provisional	96.5
PRK14282	369	chaperone protein DnaJ; Provisional	96.49
PRK14295	389	chaperone protein DnaJ; Provisional	96.42
PRK14276	380	chaperone protein DnaJ; Provisional	96.42
PTZ00037	421	DnaJ_C chaperone protein; Provisional	96.4
PRK14280	376	chaperone protein DnaJ; Provisional	96.38
PRK14287	371	chaperone protein DnaJ; Provisional	96.31
PRK14294	366	chaperone protein DnaJ; Provisional	96.25
PRK14277	386	chaperone protein DnaJ; Provisional	96.25
PRK14288	369	chaperone protein DnaJ; Provisional	96.22
TIGR02642	186	phage_xxxx uncharacterized phage protein. This unc	96.22
PRK14289	386	chaperone protein DnaJ; Provisional	96.13
PRK14291	382	chaperone protein DnaJ; Provisional	96.11
TIGR02349	354	DnaJ_bact chaperone protein DnaJ. This model repre	96.08
PRK14290	365	chaperone protein DnaJ; Provisional	96.08
TIGR02642	186	phage_xxxx uncharacterized phage protein. This unc	96.04
cd03031	147	GRX_GRX_like Glutaredoxin (GRX) family, GRX-like d	95.97
PRK14293	374	chaperone protein DnaJ; Provisional	95.96
PRK14283	378	chaperone protein DnaJ; Provisional	95.96
PRK14281	397	chaperone protein DnaJ; Provisional	95.8
PRK14292	371	chaperone protein DnaJ; Provisional	95.64
PF07092	238	DUF1356: Protein of unknown function (DUF1356); In	89.58
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	84.96
PRK00349	943	uvrA excinuclease ABC subunit A; Reviewed	80.13

>PLN03165 chaperone protein dnaJ-related; Provisional

Probab=99.92  E-value=1.1e-25  Score=170.73  Aligned_cols=110  Identities=70%  Similarity=1.161  Sum_probs=94.9

Q ss_pred             ccCcccEEEEEEeeeeeeeecceeEEEEeecCCCcccCcccccccCccccCCCCccccCCCCCCcceEEEEeCCCcccee
Q 031276           48 ELDQNTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSFCMGTGSVTVELGGDEREFS  127 (162)
Q Consensus        48 ~ld~~T~~~i~i~~~eaa~G~~~~i~~~~~~~c~~~~~C~GsG~~~C~~~C~G~G~~~C~~C~GtG~v~~~~~g~~~~~~  127 (162)
                      ||||||.++|.+....+|+|+++||+|+.++++++..    .+...|.. |.|+|..+|+.|+|+|++...+++.++...
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~----~~~v~C~~-C~GsG~~~C~~C~G~G~v~~~~~g~~q~~~   76 (111)
T PLN03165          2 DLDQNTIVAISVGVVSIAVGIGIPVFYETQIDNAAKR----ENTQPCFP-CSGTGAQVCRFCVGSGNVTVELGGGEKEVS   76 (111)
T ss_pred             ccchhhhhhhhhhhhhhhhccCCcEEEEEeeehhhhh----ccCCCCCC-CCCCCCcCCCCCcCcCeEEEEeCCcEEEEE
Confidence            8999999999999999999999999999999975441    12234444 666666799999999999876645566788


Q ss_pred             eCCCCCCCceecCCCCCCceeeCcccccccccCCC
Q 031276          128 KCINCDGVGSLTCTTCQGTGIQPRYLDRREFKDDD  162 (162)
Q Consensus       128 ~C~~C~G~G~v~C~~C~G~G~v~~~l~~r~~~~~~  162 (162)
                      +|+.|+|+|+..|+.|+|.|++++||++|+|||||
T Consensus        77 ~C~~C~G~Gk~~C~~C~G~G~~~~~~~~~~~~~~~  111 (111)
T PLN03165         77 KCINCDGAGSLTCTTCQGSGIQPRYLDRREFKDDD  111 (111)
T ss_pred             ECCCCCCcceeeCCCCCCCEEEeeeecccccCCCC
Confidence            99999999999999999999999999999999998

>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

Probab=99.76  E-value=7.5e-19  Score=156.01  Aligned_cols=91  Identities=21%  Similarity=0.400  Sum_probs=82.8

Q ss_pred             ccEEEEEEeeeeeeeecceeEEEEeecCCCcccCcccccccCccccCCCCccccCCCCCCcceEEEEeC-CCccceeeCC
Q 031276           52 NTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSFCMGTGSVTVELG-GDEREFSKCI  130 (162)
Q Consensus        52 ~T~~~i~i~~~eaa~G~~~~i~~~~~~~c~~~~~C~GsG~~~C~~~C~G~G~~~C~~C~GtG~v~~~~~-g~~~~~~~C~  130 (162)
                      +.++.|+|+|+||++|++++|.|.+++.|   ..|+|+|++      .|+.+.+|++|+|+|+++..++ |.++.+++|+
T Consensus       117 Dl~~~l~isleEa~~G~~~~i~~~~~~~C---~~C~GsGak------~gt~~~tC~tC~G~G~v~~~~~~g~~~~~~~C~  187 (371)
T COG0484         117 DLRYNLEITLEEAVFGVKKEIRVTRSVTC---STCHGSGAK------PGTDPKTCPTCNGSGQVRTVQRTGFFSFQQTCP  187 (371)
T ss_pred             ceEEEEEeEhhhhccCceeeEecceeeEC---CcCCCCCCC------CCCCCCcCCCCCCcCeEEEEEeeeEEEEEEECC
Confidence            44889999999999999999999999999   999999997      7888999999999999887653 6678899999


Q ss_pred             CCCCCcee---cCCCCCCceeeCc
Q 031276          131 NCDGVGSL---TCTTCQGTGIQPR  151 (162)
Q Consensus       131 ~C~G~G~v---~C~~C~G~G~v~~  151 (162)
                      +|+|+|++   +|++|+|.|++..
T Consensus       188 ~C~G~G~~i~~pC~~C~G~G~v~~  211 (371)
T COG0484         188 TCNGTGKIIKDPCGKCKGKGRVKK  211 (371)
T ss_pred             CCccceeECCCCCCCCCCCCeEee
Confidence            99999999   8999999997643

>PRK14279 chaperone protein DnaJ; Provisional

Probab=99.56  E-value=5.3e-15  Score=131.36  Aligned_cols=91  Identities=23%  Similarity=0.499  Sum_probs=82.0

Q ss_pred             CcccEEEEEEeeeeeeeecceeEEEEeecCCCcccCcccccccCccccCCCCccccCCCCCCcceEEEEeCCCccceeeC
Q 031276           50 DQNTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSFCMGTGSVTVELGGDEREFSKC  129 (162)
Q Consensus        50 d~~T~~~i~i~~~eaa~G~~~~i~~~~~~~c~~~~~C~GsG~~~C~~~C~G~G~~~C~~C~GtG~v~~~~~g~~~~~~~C  129 (162)
                      .++..+.|.|+|+|++.|..+++.+++.+.|   ..|+|+|+.      .+....+|+.|+|+|++...+ +.++...+|
T Consensus       146 g~di~~~l~ltLee~~~G~~~~v~~~~~~~C---~~C~G~G~~------~~~~~~~C~~C~G~G~~~~~~-g~~~~~~~C  215 (392)
T PRK14279        146 GNDLETETTLDFVEAAKGVTMPLRLTSPAPC---TTCHGSGAR------PGTSPKVCPTCNGSGVISRNQ-GAFGFSEPC  215 (392)
T ss_pred             CCCeEEEEEEEHHHHhCCeEEEEeeeccccC---CCCcccccc------CCCCCCCCCCCcceEEEEEEe-cceEEEEec
Confidence            3467889999999999999999999999999   999999986      566678999999999998776 666788999


Q ss_pred             CCCCCCcee---cCCCCCCceeeC
Q 031276          130 INCDGVGSL---TCTTCQGTGIQP  150 (162)
Q Consensus       130 ~~C~G~G~v---~C~~C~G~G~v~  150 (162)
                      +.|+|+|++   +|..|+|.|.+.
T Consensus       216 ~~C~G~G~~i~~~C~~C~G~g~v~  239 (392)
T PRK14279        216 TDCRGTGSIIEDPCEECKGTGVTT  239 (392)
T ss_pred             CCCCceeEEeCCcCCCCCCCeEEE
Confidence            999999999   899999999874

>PRK14284 chaperone protein DnaJ; Provisional

Probab=99.55  E-value=7.7e-15  Score=130.07  Aligned_cols=90  Identities=23%  Similarity=0.403  Sum_probs=81.8

Q ss_pred             cccEEEEEEeeeeeeeecceeEEEEeecCCCcccCcccccccCccccCCCCccccCCCCCCcceEEEEeCCCccceeeCC
Q 031276           51 QNTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSFCMGTGSVTVELGGDEREFSKCI  130 (162)
Q Consensus        51 ~~T~~~i~i~~~eaa~G~~~~i~~~~~~~c~~~~~C~GsG~~~C~~~C~G~G~~~C~~C~GtG~v~~~~~g~~~~~~~C~  130 (162)
                      ++..+.|.|+|+|++.|..+++.+.+.+.|   ..|+|+|+.      .+....+|+.|+|+|.+...+ |.++...+|+
T Consensus       132 ~d~~~~l~vslee~~~G~~~~i~~~r~~~C---~~C~G~G~~------~~~~~~~C~~C~G~G~v~~~~-G~~~~~~~C~  201 (391)
T PRK14284        132 ASKKVHITLSFEEAAKGVEKELLVSGYKSC---DACSGSGAN------SSQGIKVCDRCKGSGQVVQSR-GFFSMASTCP  201 (391)
T ss_pred             CCeEEEEEEEHHHHhCCeeEEEEEeeeccC---CCCcccccC------CCCCCeecCccCCeeEEEEEe-ceEEEEEECC
Confidence            456899999999999999999999999999   999999986      677789999999999998776 6777888999


Q ss_pred             CCCCCcee---cCCCCCCceeeC
Q 031276          131 NCDGVGSL---TCTTCQGTGIQP  150 (162)
Q Consensus       131 ~C~G~G~v---~C~~C~G~G~v~  150 (162)
                      .|+|.|++   +|+.|+|.|++.
T Consensus       202 ~C~G~G~~~~~~C~~C~G~g~v~  224 (391)
T PRK14284        202 ECGGEGRVITDPCSVCRGQGRIK  224 (391)
T ss_pred             CCCCCCcccCCcCCCCCCcceec
Confidence            99999998   899999999873

>PRK14298 chaperone protein DnaJ; Provisional

Probab=99.55  E-value=8.5e-15  Score=129.48  Aligned_cols=91  Identities=26%  Similarity=0.410  Sum_probs=81.4

Q ss_pred             cccEEEEEEeeeeeeeecceeEEEEeecCCCcccCcccccccCccccCCCCccccCCCCCCcceEEEEeC---CCcccee
Q 031276           51 QNTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSFCMGTGSVTVELG---GDEREFS  127 (162)
Q Consensus        51 ~~T~~~i~i~~~eaa~G~~~~i~~~~~~~c~~~~~C~GsG~~~C~~~C~G~G~~~C~~C~GtG~v~~~~~---g~~~~~~  127 (162)
                      ++..+.|.|+|+|++.|..+++.+++.+.|   ..|+|+|++      .+....+|+.|+|+|++...++   |.++...
T Consensus       115 ~di~~~l~vslee~~~G~~~~i~~~r~~~C---~~C~G~G~~------~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~  185 (377)
T PRK14298        115 SDLRYDLYITLEEAAFGVRKDIDVPRAERC---STCSGTGAK------PGTSPKRCPTCGGTGQVTTTRSTPLGQFVTTT  185 (377)
T ss_pred             CCEEEEEEEEHHHhhCCeEEEEEEEeeccC---CCCCCCccc------CCCCCCcCCCCCCccEEEEEEecCceeEEEEE
Confidence            466889999999999999999999999999   999999986      6777789999999999887663   4566788


Q ss_pred             eCCCCCCCcee---cCCCCCCceeeC
Q 031276          128 KCINCDGVGSL---TCTTCQGTGIQP  150 (162)
Q Consensus       128 ~C~~C~G~G~v---~C~~C~G~G~v~  150 (162)
                      +|+.|+|+|++   +|+.|+|.|++.
T Consensus       186 ~C~~C~G~G~~~~~~C~~C~G~g~v~  211 (377)
T PRK14298        186 TCSTCHGRGQVIESPCPVCSGTGKVR  211 (377)
T ss_pred             eCCCCCCCCcccCCCCCCCCCccEEE
Confidence            99999999988   899999999874

>PRK14286 chaperone protein DnaJ; Provisional

Probab=99.55  E-value=7.3e-15  Score=129.60  Aligned_cols=91  Identities=24%  Similarity=0.407  Sum_probs=82.0

Q ss_pred             cccEEEEEEeeeeeeeecceeEEEEeecCCCcccCcccccccCccccCCCCccccCCCCCCcceEEEEeCCCccceeeCC
Q 031276           51 QNTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSFCMGTGSVTVELGGDEREFSKCI  130 (162)
Q Consensus        51 ~~T~~~i~i~~~eaa~G~~~~i~~~~~~~c~~~~~C~GsG~~~C~~~C~G~G~~~C~~C~GtG~v~~~~~g~~~~~~~C~  130 (162)
                      ++..+.|.|+|+|++.|..+++.+.+.+.|   ..|+|+|+.      .+....+|+.|+|+|.+...+ |.++...+|+
T Consensus       124 ~di~~~l~vtLee~~~G~~k~i~~~r~~~C---~~C~G~G~~------~~~~~~~C~~C~G~G~v~~~~-G~~~~~~~C~  193 (372)
T PRK14286        124 SDLRYNLEVSLEDAALGREYKIEIPRLESC---VDCNGSGAS------KGSSPTTCPDCGGSGQIRRTQ-GFFSVATTCP  193 (372)
T ss_pred             CCeeEEEEEEHHHHhCCeeEEEEeeccccC---CCCcCCCcC------CCCCCccCCCCcCeEEEEEEe-ceEEEEEeCC
Confidence            567889999999999999999999999999   999999985      566678999999999998776 7777888999


Q ss_pred             CCCCCcee---cCCCCCCceeeCc
Q 031276          131 NCDGVGSL---TCTTCQGTGIQPR  151 (162)
Q Consensus       131 ~C~G~G~v---~C~~C~G~G~v~~  151 (162)
                      .|+|+|++   +|+.|+|.|.+..
T Consensus       194 ~C~G~G~~~~~~C~~C~G~g~~~~  217 (372)
T PRK14286        194 TCRGKGTVISNPCKTCGGQGLQEK  217 (372)
T ss_pred             CCCceeeEecccCCCCCCCcEEec
Confidence            99999998   8999999998753

>PRK14282 chaperone protein DnaJ; Provisional

Probab=99.55  E-value=1.2e-14  Score=127.84  Aligned_cols=92  Identities=27%  Similarity=0.469  Sum_probs=81.9

Q ss_pred             cccEEEEEEeeeeeeeecceeEEEEeecCCCcccCcccccccCccccCCCCccccCCCCCCcceEEEEeC---CCcccee
Q 031276           51 QNTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSFCMGTGSVTVELG---GDEREFS  127 (162)
Q Consensus        51 ~~T~~~i~i~~~eaa~G~~~~i~~~~~~~c~~~~~C~GsG~~~C~~~C~G~G~~~C~~C~GtG~v~~~~~---g~~~~~~  127 (162)
                      ++..+.|.|+|+|++.|..+++.+.+.+.|   ..|+|+|+.      .+....+|+.|+|+|++...++   |.++...
T Consensus       126 ~di~~~l~~slee~~~G~~~~i~~~r~~~C---~~C~G~G~~------~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~  196 (369)
T PRK14282        126 EDIRYEIEVTLSDLINGAEIPVEYDRYETC---PHCGGTGVE------PGSGYVTCPKCHGTGRIREERRSFFGVFVSER  196 (369)
T ss_pred             CCeEEEEEEEHHHhcCCeEEEEEeeecccC---CCCCccCCC------CCCCCcCCCCCCCcCEEEEEEEccCcceEEEE
Confidence            467899999999999999999999999999   999999985      6667789999999999887652   6677788


Q ss_pred             eCCCCCCCcee---cCCCCCCceeeCc
Q 031276          128 KCINCDGVGSL---TCTTCQGTGIQPR  151 (162)
Q Consensus       128 ~C~~C~G~G~v---~C~~C~G~G~v~~  151 (162)
                      +|+.|+|+|++   +|+.|+|.|++..
T Consensus       197 ~C~~C~G~G~~~~~~C~~C~G~g~v~~  223 (369)
T PRK14282        197 TCERCGGTGKIPGEYCHECGGSGRIRR  223 (369)
T ss_pred             ECCCCCCcceeCCCCCCCCCCceeEEE
Confidence            99999999998   8999999997754

>PRK14295 chaperone protein DnaJ; Provisional

Probab=99.55  E-value=8.8e-15  Score=129.85  Aligned_cols=92  Identities=22%  Similarity=0.417  Sum_probs=82.7

Q ss_pred             CcccEEEEEEeeeeeeeecceeEEEEeecCCCcccCcccccccCccccCCCCccccCCCCCCcceEEEEeCCCccceeeC
Q 031276           50 DQNTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSFCMGTGSVTVELGGDEREFSKC  129 (162)
Q Consensus        50 d~~T~~~i~i~~~eaa~G~~~~i~~~~~~~c~~~~~C~GsG~~~C~~~C~G~G~~~C~~C~GtG~v~~~~~g~~~~~~~C  129 (162)
                      .++..+.|.|+|+|++.|..++|.+++.+.|   ..|+|+|++      .+....+|+.|+|+|++...+ |.++...+|
T Consensus       139 g~di~~~l~lsLee~~~G~~k~i~~~r~~~C---~~C~G~G~~------~~~~~~~C~~C~G~G~~~~~~-g~~~~~~~C  208 (389)
T PRK14295        139 GADVESEVTLSFTEAIDGATVPLRLTSQAPC---PACSGTGAK------NGTTPRVCPTCSGTGQVSRNS-GGFSLSEPC  208 (389)
T ss_pred             CCCEEEEEEEEHHHHhCCceEEEEeeccccC---CCCcccccC------CCCCCcCCCCCCCEeEEEEEe-cceEEEEec
Confidence            3467889999999999999999999999999   999999986      677778999999999998876 677788899


Q ss_pred             CCCCCCcee---cCCCCCCceeeCc
Q 031276          130 INCDGVGSL---TCTTCQGTGIQPR  151 (162)
Q Consensus       130 ~~C~G~G~v---~C~~C~G~G~v~~  151 (162)
                      +.|+|+|++   +|..|.|.|++..
T Consensus       209 ~~C~G~G~~~~~~C~~C~G~g~~~~  233 (389)
T PRK14295        209 PDCKGRGLIADDPCLVCKGSGRAKS  233 (389)
T ss_pred             CCCcceeEEeccCCCCCCCCceEee
Confidence            999999998   8999999997743

>PRK14278 chaperone protein DnaJ; Provisional

Probab=99.54  E-value=1.4e-14  Score=127.96  Aligned_cols=91  Identities=24%  Similarity=0.455  Sum_probs=80.6

Q ss_pred             cccEEEEEEeeeeeeeecceeEEEEeecCCCcccCcccccccCccccCCCCccccCCCCCCcceEEEEeC---CCcccee
Q 031276           51 QNTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSFCMGTGSVTVELG---GDEREFS  127 (162)
Q Consensus        51 ~~T~~~i~i~~~eaa~G~~~~i~~~~~~~c~~~~~C~GsG~~~C~~~C~G~G~~~C~~C~GtG~v~~~~~---g~~~~~~  127 (162)
                      ++..+.|.|+|+|++.|..+++.+.+.+.|   ..|+|+|++      .+....+|+.|+|+|++...+.   |.++...
T Consensus       113 ~d~~~~l~vtLee~~~G~~~~i~~~~~~~C---~~C~G~G~~------~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~  183 (378)
T PRK14278        113 SDSLLRMRLDLEECATGVTKQVTVDTAVLC---DRCHGKGTA------GDSKPVTCDTCGGRGEVQTVQRSFLGQVMTSR  183 (378)
T ss_pred             CCeEEEEEEEHHHhcCCeEEEEEEEeeccC---CCCcCccCC------CCCCceecCCccCceEEEEEEeccceeEEEEE
Confidence            456889999999999999999999999999   999999986      6777789999999999887653   5566778


Q ss_pred             eCCCCCCCcee---cCCCCCCceeeC
Q 031276          128 KCINCDGVGSL---TCTTCQGTGIQP  150 (162)
Q Consensus       128 ~C~~C~G~G~v---~C~~C~G~G~v~  150 (162)
                      +|+.|+|.|++   +|+.|+|.|.+.
T Consensus       184 ~C~~C~G~G~~~~~~C~~C~G~g~v~  209 (378)
T PRK14278        184 PCPTCRGVGEVIPDPCHECAGDGRVR  209 (378)
T ss_pred             ECCCCCccceeeCCCCCCCCCceeEe
Confidence            99999999998   899999999773

>PRK14285 chaperone protein DnaJ; Provisional

Probab=99.54  E-value=1.1e-14  Score=128.08  Aligned_cols=90  Identities=24%  Similarity=0.417  Sum_probs=80.4

Q ss_pred             cccEEEEEEeeeeeeeecceeEEEEeecCCCcccCcccccccCccccCCCCccccCCCCCCcceEEEEeCCCccceeeCC
Q 031276           51 QNTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSFCMGTGSVTVELGGDEREFSKCI  130 (162)
Q Consensus        51 ~~T~~~i~i~~~eaa~G~~~~i~~~~~~~c~~~~~C~GsG~~~C~~~C~G~G~~~C~~C~GtG~v~~~~~g~~~~~~~C~  130 (162)
                      ++..+.|.|+|+|++.|..+++.+++.+.|   ..|+|+|+.      .+....+|+.|+|+|++... .|.++...+|+
T Consensus       120 ~di~~~l~vtlee~~~G~~~~i~~~r~~~C---~~C~G~G~~------~~~~~~~C~~C~G~G~~~~~-~G~~~~~~~C~  189 (365)
T PRK14285        120 QDLTYQIEISLEDAYLGYKNNINITRNMLC---ESCLGKKSE------KGTSPSICNMCNGSGRVMQG-GGFFRVTTTCP  189 (365)
T ss_pred             CCEEEEEEEEHHHhhCCeEEEEEeeecccC---CCCCCcccC------CCCCCccCCCccCceeEEec-CceeEEeeecC
Confidence            466889999999999999999999999999   999999986      56667899999999998864 36667889999


Q ss_pred             CCCCCcee---cCCCCCCceeeC
Q 031276          131 NCDGVGSL---TCTTCQGTGIQP  150 (162)
Q Consensus       131 ~C~G~G~v---~C~~C~G~G~v~  150 (162)
                      .|+|.|++   +|..|+|.|++.
T Consensus       190 ~C~G~G~~~~~~C~~C~G~g~v~  212 (365)
T PRK14285        190 KCYGNGKIISNPCKSCKGKGSLK  212 (365)
T ss_pred             CCCCcccccCCCCCCCCCCCEEe
Confidence            99999998   899999999874

>PRK14276 chaperone protein DnaJ; Provisional

Probab=99.53  E-value=1.6e-14  Score=127.71  Aligned_cols=91  Identities=24%  Similarity=0.472  Sum_probs=80.9

Q ss_pred             cccEEEEEEeeeeeeeecceeEEEEeecCCCcccCcccccccCccccCCCCccccCCCCCCcceEEEEeC---CCcccee
Q 031276           51 QNTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSFCMGTGSVTVELG---GDEREFS  127 (162)
Q Consensus        51 ~~T~~~i~i~~~eaa~G~~~~i~~~~~~~c~~~~~C~GsG~~~C~~~C~G~G~~~C~~C~GtG~v~~~~~---g~~~~~~  127 (162)
                      ++..+.|.|+|+|++.|..++|.+.+.+.|   ..|+|+|+.      .+....+|+.|+|+|.++..++   |.++...
T Consensus       120 ~di~~~l~vtLee~~~G~~~~i~~~~~~~C---~~C~G~G~~------~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~  190 (380)
T PRK14276        120 DDLQYRVNLDFEEAIFGKEKEVSYNREATC---HTCNGSGAK------PGTSPVTCGKCHGSGVITVDTQTPLGMMRRQV  190 (380)
T ss_pred             CCEEEEEEEEHHHhcCCeEEEEEeeccccC---CCCcCcccC------CCCCCccCCCCCCeeEEEEEEecCCceEEEEE
Confidence            466889999999999999999999999999   999999986      5666789999999999887663   5566788


Q ss_pred             eCCCCCCCcee---cCCCCCCceeeC
Q 031276          128 KCINCDGVGSL---TCTTCQGTGIQP  150 (162)
Q Consensus       128 ~C~~C~G~G~v---~C~~C~G~G~v~  150 (162)
                      +|+.|+|.|++   +|+.|+|.|++.
T Consensus       191 ~C~~C~G~G~~~~~~C~~C~G~g~~~  216 (380)
T PRK14276        191 TCDVCHGTGKEIKEPCQTCHGTGHEK  216 (380)
T ss_pred             ECCCCCCCCccccCCCCCCCCceEEE
Confidence            99999999998   899999999864

>PRK14280 chaperone protein DnaJ; Provisional

Probab=99.53  E-value=1.9e-14  Score=127.06  Aligned_cols=92  Identities=24%  Similarity=0.420  Sum_probs=81.0

Q ss_pred             CcccEEEEEEeeeeeeeecceeEEEEeecCCCcccCcccccccCccccCCCCccccCCCCCCcceEEEEeC---CCccce
Q 031276           50 DQNTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSFCMGTGSVTVELG---GDEREF  126 (162)
Q Consensus        50 d~~T~~~i~i~~~eaa~G~~~~i~~~~~~~c~~~~~C~GsG~~~C~~~C~G~G~~~C~~C~GtG~v~~~~~---g~~~~~  126 (162)
                      .++..+.|.|+|+|++.|..++|.+++.+.|   ..|+|+|+.      .+....+|+.|+|+|++...+.   |.++..
T Consensus       116 g~di~~~l~vtLee~~~G~~~~i~~~r~~~C---~~C~G~G~~------~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~  186 (376)
T PRK14280        116 GADLQYTMTLTFEEAVFGKEKEIEIPKEETC---DTCHGSGAK------PGTSKETCSHCGGSGQVSVEQNTPFGRVVNR  186 (376)
T ss_pred             ccCEEEEEEEEHHHHhCCceeEEEEeeeccC---CCCCCcccC------CCCCCccCCCCCCEEEEEEEeecCCceEEEE
Confidence            3467899999999999999999999999999   999999985      6666789999999999887653   455677


Q ss_pred             eeCCCCCCCcee---cCCCCCCceeeC
Q 031276          127 SKCINCDGVGSL---TCTTCQGTGIQP  150 (162)
Q Consensus       127 ~~C~~C~G~G~v---~C~~C~G~G~v~  150 (162)
                      .+|+.|+|.|++   +|+.|+|.|++.
T Consensus       187 ~~C~~C~G~G~~~~~~C~~C~G~g~v~  213 (376)
T PRK14280        187 QTCPHCNGTGQEIKEKCPTCHGKGKVR  213 (376)
T ss_pred             EEcCCCCCCCceecCCCCCCCCceEEE
Confidence            899999999998   899999999874

>PRK14301 chaperone protein DnaJ; Provisional

Probab=99.53  E-value=1.3e-14  Score=128.14  Aligned_cols=90  Identities=23%  Similarity=0.389  Sum_probs=81.2

Q ss_pred             cccEEEEEEeeeeeeeecceeEEEEeecCCCcccCcccccccCccccCCCCccccCCCCCCcceEEEEeCCCccceeeCC
Q 031276           51 QNTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSFCMGTGSVTVELGGDEREFSKCI  130 (162)
Q Consensus        51 ~~T~~~i~i~~~eaa~G~~~~i~~~~~~~c~~~~~C~GsG~~~C~~~C~G~G~~~C~~C~GtG~v~~~~~g~~~~~~~C~  130 (162)
                      ++..+.|.|+|+|++.|..+++.+++.+.|   ..|+|+|+.      .+....+|+.|+|+|++.... |.++...+|+
T Consensus       118 ~di~~~l~vtLee~~~G~~k~i~~~r~~~C---~~C~G~G~~------~~~~~~~C~~C~G~G~v~~~~-G~~~~~~~C~  187 (373)
T PRK14301        118 SDLRYNLTVSFRQAAKGDEVTLRIPKNVTC---DDCGGSGAA------PGTSPETCRHCGGSGQVRQSQ-GFFQIAVPCP  187 (373)
T ss_pred             CCEEEEEeccHHHHhCCceEEEEeeecccC---CCCCCcccC------CCCCCcccCCccCeeEEEEEe-eeEEEEEeCC
Confidence            467899999999999999999999999999   999999986      566678999999999998765 6677889999


Q ss_pred             CCCCCcee---cCCCCCCceeeC
Q 031276          131 NCDGVGSL---TCTTCQGTGIQP  150 (162)
Q Consensus       131 ~C~G~G~v---~C~~C~G~G~v~  150 (162)
                      .|+|.|++   +|+.|+|.|++.
T Consensus       188 ~C~G~G~~~~~~C~~C~G~g~v~  210 (373)
T PRK14301        188 VCRGEGRVITHPCPKCKGSGIVQ  210 (373)
T ss_pred             CCCceeeecCCCCCCCCCCceec
Confidence            99999998   899999999874

>PRK14296 chaperone protein DnaJ; Provisional

Probab=99.52  E-value=1.6e-14  Score=127.56  Aligned_cols=91  Identities=26%  Similarity=0.484  Sum_probs=79.5

Q ss_pred             cccEEEEEEeeeeeeeecceeEEEEeecCCCcccCcccccccCccccCCCCccccCCCCCCcceEEEEeC-CC--cccee
Q 031276           51 QNTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSFCMGTGSVTVELG-GD--EREFS  127 (162)
Q Consensus        51 ~~T~~~i~i~~~eaa~G~~~~i~~~~~~~c~~~~~C~GsG~~~C~~~C~G~G~~~C~~C~GtG~v~~~~~-g~--~~~~~  127 (162)
                      ++..+.|.|+|+|++.|..++|.+++.+.|   ..|+|+|++      .+....+|+.|+|+|.+...++ |.  ++...
T Consensus       123 ~di~~~l~ltlee~~~G~~~~i~~~~~~~C---~~C~G~G~~------~~~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~  193 (372)
T PRK14296        123 QSVSLDIYLTFKELLFGVDKIIELDLLTNC---SKCFGSGAE------SNSDIHICNNCHGTGEVLVQKNMGFFQFQQSA  193 (372)
T ss_pred             CCeEEEeeccHHHhhCCeeEEEEEeeeecc---CCCCCCccC------CCCCCccCCCCCCCceEEEEEeccceEEEEEe
Confidence            466889999999999999999999999999   999999986      6677789999999999887653 33  24567


Q ss_pred             eCCCCCCCcee---cCCCCCCceeeC
Q 031276          128 KCINCDGVGSL---TCTTCQGTGIQP  150 (162)
Q Consensus       128 ~C~~C~G~G~v---~C~~C~G~G~v~  150 (162)
                      +|+.|+|+|++   +|+.|+|.|.+.
T Consensus       194 ~C~~C~G~G~~~~~~C~~C~G~g~v~  219 (372)
T PRK14296        194 KCNVCNGAGKIIKNKCKNCKGKGKYL  219 (372)
T ss_pred             cCCCcCCcceeecccccCCCCceEEE
Confidence            99999999998   799999999763

>PRK14300 chaperone protein DnaJ; Provisional

Probab=99.52  E-value=2.6e-14  Score=126.04  Aligned_cols=91  Identities=21%  Similarity=0.435  Sum_probs=81.2

Q ss_pred             cccEEEEEEeeeeeeeecceeEEEEeecCCCcccCcccccccCccccCCCCccccCCCCCCcceEEEEeCCCccceeeCC
Q 031276           51 QNTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSFCMGTGSVTVELGGDEREFSKCI  130 (162)
Q Consensus        51 ~~T~~~i~i~~~eaa~G~~~~i~~~~~~~c~~~~~C~GsG~~~C~~~C~G~G~~~C~~C~GtG~v~~~~~g~~~~~~~C~  130 (162)
                      ++..+.+.|+|+|++.|..++|.|.+.+.|   ..|+|+|..      .+....+|+.|+|+|.++... |.++...+|+
T Consensus       119 ~di~~~l~~sLee~~~G~~k~i~~~r~~~C---~~C~G~g~~------~~~~~~~C~~C~G~G~~~~~~-g~~~~~~~C~  188 (372)
T PRK14300        119 SDLKYNLTINLEEAFHGIEKNISFSSEVKC---DTCHGSGSE------KGETVTTCDACSGVGATRMQQ-GFFTIEQACH  188 (372)
T ss_pred             CCeeEEEEEEHHHHhCCceEEEEeeecccc---CCCCCcccC------CCCCCccCCCccCeEEEEEee-ceEEEEEeCC
Confidence            466889999999999999999999999999   999999986      566678999999999988764 6667788999


Q ss_pred             CCCCCcee---cCCCCCCceeeCc
Q 031276          131 NCDGVGSL---TCTTCQGTGIQPR  151 (162)
Q Consensus       131 ~C~G~G~v---~C~~C~G~G~v~~  151 (162)
                      .|+|.|++   +|+.|+|.|++..
T Consensus       189 ~C~G~G~~~~~~C~~C~G~g~v~~  212 (372)
T PRK14300        189 KCQGNGQIIKNPCKKCHGMGRYHK  212 (372)
T ss_pred             CCCccceEeCCCCCCCCCceEEEe
Confidence            99999999   8999999998743

>PRK10767 chaperone protein DnaJ; Provisional

Probab=99.51  E-value=2.7e-14  Score=125.47  Aligned_cols=92  Identities=22%  Similarity=0.400  Sum_probs=81.6

Q ss_pred             CcccEEEEEEeeeeeeeecceeEEEEeecCCCcccCcccccccCccccCCCCccccCCCCCCcceEEEEeCCCccceeeC
Q 031276           50 DQNTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSFCMGTGSVTVELGGDEREFSKC  129 (162)
Q Consensus        50 d~~T~~~i~i~~~eaa~G~~~~i~~~~~~~c~~~~~C~GsG~~~C~~~C~G~G~~~C~~C~GtG~v~~~~~g~~~~~~~C  129 (162)
                      .++..+.|.|+|+|++.|..+++.+.+.+.|   ..|+|+|..      .+.....|+.|+|+|++...+ |.++...+|
T Consensus       115 g~di~~~l~vsLee~~~G~~~~v~~~r~~~C---~~C~G~G~~------~~~~~~~C~~C~G~G~~~~~~-g~~~~~~~C  184 (371)
T PRK10767        115 GADLRYNMEITLEEAVRGVTKEIRIPTLVTC---DTCHGSGAK------PGTSPKTCPTCHGAGQVRMQQ-GFFTVQQTC  184 (371)
T ss_pred             CCCeEEEEEeehHHhhCCeeEEEeeeecccC---CCCCCcccC------CCCCCccCCCCCCeeEEEEee-ceEEEEEeC
Confidence            3467889999999999999999999999999   999999985      566668999999999988776 666778899


Q ss_pred             CCCCCCcee---cCCCCCCceeeCc
Q 031276          130 INCDGVGSL---TCTTCQGTGIQPR  151 (162)
Q Consensus       130 ~~C~G~G~v---~C~~C~G~G~v~~  151 (162)
                      +.|+|.|++   +|+.|+|.|.+..
T Consensus       185 ~~C~G~G~~~~~~C~~C~G~g~v~~  209 (371)
T PRK10767        185 PTCHGRGKIIKDPCKKCHGQGRVEK  209 (371)
T ss_pred             CCCCCceeECCCCCCCCCCCceEee
Confidence            999999998   8999999998743

>PRK14297 chaperone protein DnaJ; Provisional

Probab=99.51  E-value=3.8e-14  Score=125.12  Aligned_cols=91  Identities=22%  Similarity=0.404  Sum_probs=80.9

Q ss_pred             cccEEEEEEeeeeeeeecceeEEEEeecCCCcccCcccccccCccccCCCCccccCCCCCCcceEEEEeC---CCcccee
Q 031276           51 QNTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSFCMGTGSVTVELG---GDEREFS  127 (162)
Q Consensus        51 ~~T~~~i~i~~~eaa~G~~~~i~~~~~~~c~~~~~C~GsG~~~C~~~C~G~G~~~C~~C~GtG~v~~~~~---g~~~~~~  127 (162)
                      ++..+.+.|+|+|++.|..++|.+++.+.|   ..|+|+|..      .+....+|+.|+|+|++...++   |.++...
T Consensus       122 ~di~~~l~vsLee~~~G~~~~i~~~r~~~C---~~C~G~G~~------~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~  192 (380)
T PRK14297        122 ADIEYTINLTFEEAVFGVEKEISVTRNENC---ETCNGTGAK------PGTSPKTCDKCGGTGQIRVQRNTPLGSFVSTT  192 (380)
T ss_pred             CCEEEEEEEEHHHhcCCeEEEEEeeeeccC---CCccccccc------CCCcCccCCCccCeEEEEEEEEcCCceeEEEE
Confidence            467899999999999999999999999999   999999985      6777789999999999886652   5566788


Q ss_pred             eCCCCCCCcee---cCCCCCCceeeC
Q 031276          128 KCINCDGVGSL---TCTTCQGTGIQP  150 (162)
Q Consensus       128 ~C~~C~G~G~v---~C~~C~G~G~v~  150 (162)
                      +|+.|+|.|++   +|..|+|.|++.
T Consensus       193 ~C~~C~G~G~~~~~~C~~C~G~g~v~  218 (380)
T PRK14297        193 TCDKCGGSGKVIEDPCNKCHGKGKVR  218 (380)
T ss_pred             eCCCCCCCceEcCCCCCCCCCCeEEE
Confidence            99999999998   899999999764

>PRK14294 chaperone protein DnaJ; Provisional

Probab=99.50  E-value=3.9e-14  Score=124.51  Aligned_cols=91  Identities=23%  Similarity=0.379  Sum_probs=81.5

Q ss_pred             CcccEEEEEEeeeeeeeecceeEEEEeecCCCcccCcccccccCccccCCCCccccCCCCCCcceEEEEeCCCccceeeC
Q 031276           50 DQNTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSFCMGTGSVTVELGGDEREFSKC  129 (162)
Q Consensus        50 d~~T~~~i~i~~~eaa~G~~~~i~~~~~~~c~~~~~C~GsG~~~C~~~C~G~G~~~C~~C~GtG~v~~~~~g~~~~~~~C  129 (162)
                      .++..+.|.|+|+|++.|..+++.+++.+.|   ..|+|+|..      .+....+|+.|+|+|.+.... |.++...+|
T Consensus       117 g~d~~~~l~lslee~~~G~~~~i~~~r~~~C---~~C~G~G~~------~~~~~~~C~~C~G~G~~~~~~-G~~~~~~~C  186 (366)
T PRK14294        117 GADLRYDLTLPFLEAAFGTEKEIRIQKLETC---EECHGSGCE------PGTSPTTCPQCGGSGQVTQSQ-GFFSIRTTC  186 (366)
T ss_pred             CCCceEEEEeeHHHhcCCeEEEEEeeecccC---CCCCCcccc------CCCCcccCCCcCCeEEEEEEe-eeEEEEeeC
Confidence            3567899999999999999999999999999   999999985      566678999999999988665 667788999


Q ss_pred             CCCCCCcee---cCCCCCCceeeC
Q 031276          130 INCDGVGSL---TCTTCQGTGIQP  150 (162)
Q Consensus       130 ~~C~G~G~v---~C~~C~G~G~v~  150 (162)
                      +.|+|.|++   +|+.|+|.|++.
T Consensus       187 ~~C~G~G~~~~~~C~~C~G~g~v~  210 (366)
T PRK14294        187 PRCRGMGKVIVSPCKTCHGQGRVR  210 (366)
T ss_pred             CCCCCcCeecCcCCCCCCCceEee
Confidence            999999998   899999999874

>PRK14287 chaperone protein DnaJ; Provisional

Probab=99.50  E-value=5.2e-14  Score=124.19  Aligned_cols=92  Identities=23%  Similarity=0.423  Sum_probs=81.0

Q ss_pred             CcccEEEEEEeeeeeeeecceeEEEEeecCCCcccCcccccccCccccCCCCccccCCCCCCcceEEEEeC---CCccce
Q 031276           50 DQNTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSFCMGTGSVTVELG---GDEREF  126 (162)
Q Consensus        50 d~~T~~~i~i~~~eaa~G~~~~i~~~~~~~c~~~~~C~GsG~~~C~~~C~G~G~~~C~~C~GtG~v~~~~~---g~~~~~  126 (162)
                      .++..+.|.|+|+|++.|..++|.+.+.+.|   ..|+|+|+.      .+....+|+.|+|+|++...+.   |.++..
T Consensus       111 g~d~~~~l~vslee~~~G~~~~i~~~r~~~C---~~C~G~G~~------~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~  181 (371)
T PRK14287        111 GADLQYTMTLEFKEAVFGKETEIEIPREETC---GTCHGSGAK------PGTKPETCSHCGGSGQLNVEQNTPFGRVVNR  181 (371)
T ss_pred             CCCEEEEEEEEHHHhcCCeEEEEEEeeeccC---CCCCCcccC------CCCCCcccCCCCCEEEEEEEEecCCceEEEE
Confidence            3566899999999999999999999999999   999999986      5666789999999999887663   555667


Q ss_pred             eeCCCCCCCcee---cCCCCCCceeeC
Q 031276          127 SKCINCDGVGSL---TCTTCQGTGIQP  150 (162)
Q Consensus       127 ~~C~~C~G~G~v---~C~~C~G~G~v~  150 (162)
                      .+|+.|+|+|++   +|..|.|.|.+.
T Consensus       182 ~~C~~C~G~G~~~~~~C~~C~G~g~v~  208 (371)
T PRK14287        182 RVCHHCEGTGKIIKQKCATCGGKGKVR  208 (371)
T ss_pred             EeCCCCCCCCccccccCCCCCCeeEEe
Confidence            899999999998   899999999874

>PRK14291 chaperone protein DnaJ; Provisional

Probab=99.49  E-value=4.4e-14  Score=124.96  Aligned_cols=90  Identities=22%  Similarity=0.403  Sum_probs=80.8

Q ss_pred             cccEEEEEEeeeeeeeecceeEEEEeecCCCcccCcccccccCccccCCCCccccCCCCCCcceEEEEeCCCccceeeCC
Q 031276           51 QNTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSFCMGTGSVTVELGGDEREFSKCI  130 (162)
Q Consensus        51 ~~T~~~i~i~~~eaa~G~~~~i~~~~~~~c~~~~~C~GsG~~~C~~~C~G~G~~~C~~C~GtG~v~~~~~g~~~~~~~C~  130 (162)
                      ++..+.|.|+|+|++.|..++|.+.+.+.|   ..|+|+|..      .+....+|+.|+|+|++... ++.++...+|+
T Consensus       130 ~di~~~l~vsLee~~~G~~~~i~~~r~~~C---~~C~G~G~~------~~~~~~~C~~C~G~G~~~~~-~g~~~~~~~C~  199 (382)
T PRK14291        130 EDIYQTVEISLEEAYTGTTVSLEVPRYVPC---EACGGTGYD------PGSGEKVCPTCGGSGEIYQR-GGFFRISQTCP  199 (382)
T ss_pred             CCEEEEEEEEHHHhhCCEEEEEEEeeeccC---CCCccccCC------CCCCCccCCCCCCceEEEEe-cceEEEEecCC
Confidence            467899999999999999999999999999   999999985      66677899999999998876 36677889999


Q ss_pred             CCCCCcee--cCCCCCCceeeC
Q 031276          131 NCDGVGSL--TCTTCQGTGIQP  150 (162)
Q Consensus       131 ~C~G~G~v--~C~~C~G~G~v~  150 (162)
                      .|+|.|.+  +|+.|+|.|++.
T Consensus       200 ~C~G~G~~~~~C~~C~G~g~v~  221 (382)
T PRK14291        200 TCGGEGVLREPCSKCNGRGLVI  221 (382)
T ss_pred             CCCCceEEccCCCCCCCCceEE
Confidence            99999977  899999999774

>PRK14288 chaperone protein DnaJ; Provisional

Probab=99.49  E-value=3.7e-14  Score=125.04  Aligned_cols=89  Identities=21%  Similarity=0.333  Sum_probs=79.0

Q ss_pred             cccEEEEEEeeeeeeeecceeEEEEeecCCCcccCcccccccCccccCCCCccccCCCCCCcceEEEEeCCCccceeeCC
Q 031276           51 QNTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSFCMGTGSVTVELGGDEREFSKCI  130 (162)
Q Consensus        51 ~~T~~~i~i~~~eaa~G~~~~i~~~~~~~c~~~~~C~GsG~~~C~~~C~G~G~~~C~~C~GtG~v~~~~~g~~~~~~~C~  130 (162)
                      ++..+.|.|+|+|++.|..++|.+.+.+.|   ..|+|+|+.      .+ ...+|+.|+|+|.+...+ |.++...+|+
T Consensus       114 ~di~~~l~vslee~~~G~~~~i~~~r~~~C---~~C~G~G~~------~~-~~~~C~~C~G~G~~~~~~-g~~~~~~~C~  182 (369)
T PRK14288        114 PDYLQTIELSFKEAVFGCKKTIKVQYQSVC---ESCDGTGAK------DK-ALETCKQCNGQGQVFMRQ-GFMSFAQTCG  182 (369)
T ss_pred             CCeeEeccccHHHHhCCeEEEEEEEeeccC---CCCCCcccC------CC-CCcCCCCCCCCcEEEEEe-ceEEEEEecC
Confidence            466889999999999999999999999999   999999985      33 458999999999988765 6677788999


Q ss_pred             CCCCCcee---cCCCCCCceeeC
Q 031276          131 NCDGVGSL---TCTTCQGTGIQP  150 (162)
Q Consensus       131 ~C~G~G~v---~C~~C~G~G~v~  150 (162)
                      .|+|+|++   +|+.|+|.|++.
T Consensus       183 ~C~G~G~~~~~~C~~C~G~g~v~  205 (369)
T PRK14288        183 ACQGKGKIIKTPCQACKGKTYIL  205 (369)
T ss_pred             CCCCCceEccccCccCCCcceEE
Confidence            99999998   899999999774

>PRK14277 chaperone protein DnaJ; Provisional

Probab=99.49  E-value=6.9e-14  Score=123.84  Aligned_cols=91  Identities=24%  Similarity=0.402  Sum_probs=80.5

Q ss_pred             cccEEEEEEeeeeeeeecceeEEEEeecCCCcccCcccccccCccccCCCCccccCCCCCCcceEEEEeC---CCcccee
Q 031276           51 QNTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSFCMGTGSVTVELG---GDEREFS  127 (162)
Q Consensus        51 ~~T~~~i~i~~~eaa~G~~~~i~~~~~~~c~~~~~C~GsG~~~C~~~C~G~G~~~C~~C~GtG~v~~~~~---g~~~~~~  127 (162)
                      ++..+.|.|+|+|++.|..+++.+++.+.|   ..|+|+|..      .+....+|+.|+|+|++...+.   |.++...
T Consensus       129 ~di~~~l~vtLee~~~G~~~~v~~~r~~~C---~~C~G~G~~------~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~  199 (386)
T PRK14277        129 ADIRYDLELTFEEAAFGTEKEIEVERFEKC---DVCKGSGAK------PGSKPVTCPVCHGTGQVRTRQNTPFGRIVNIR  199 (386)
T ss_pred             CCEEEEEEEEHHHHhCCeEEEEEEEeeccC---CCCCCCCcC------CCCCCccCCCCCCEEEEEEEEeccCceEEEEE
Confidence            467889999999999999999999999999   999999985      5666789999999999876652   5566678


Q ss_pred             eCCCCCCCcee---cCCCCCCceeeC
Q 031276          128 KCINCDGVGSL---TCTTCQGTGIQP  150 (162)
Q Consensus       128 ~C~~C~G~G~v---~C~~C~G~G~v~  150 (162)
                      +|+.|+|+|++   +|+.|+|.|.+.
T Consensus       200 ~C~~C~G~G~~~~~~C~~C~G~g~v~  225 (386)
T PRK14277        200 TCDRCHGEGKIITDPCNKCGGTGRIR  225 (386)
T ss_pred             ECCCCCcceeeccCCCCCCCCCcEEe
Confidence            99999999999   899999999873

>PRK14281 chaperone protein DnaJ; Provisional

Probab=99.49  E-value=6.1e-14  Score=124.71  Aligned_cols=91  Identities=23%  Similarity=0.472  Sum_probs=79.5

Q ss_pred             cccEEEEEEeeeeeeeecceeEEEEeecCCCcccCcccccccCccccCCCCccccCCCCCCcceEEEEeC---CCcccee
Q 031276           51 QNTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSFCMGTGSVTVELG---GDEREFS  127 (162)
Q Consensus        51 ~~T~~~i~i~~~eaa~G~~~~i~~~~~~~c~~~~~C~GsG~~~C~~~C~G~G~~~C~~C~GtG~v~~~~~---g~~~~~~  127 (162)
                      ++..+.|.|+|+|++.|..+++.+.+.+.|   ..|+|+|+.      .+ ...+|+.|+|+|+++..+.   |.++...
T Consensus       137 ~di~~~l~vtLee~~~G~~~~i~~~r~~~C---~~C~G~G~~------~~-~~~~C~~C~G~G~~~~~~~~~~g~~~~~~  206 (397)
T PRK14281        137 TDLKIRLKLTLEEIAKGVEKTLKIKKQVPC---KECNGTGSK------TG-ATETCPTCHGSGEVRQASKTMFGQFVNIT  206 (397)
T ss_pred             CCEEEEEEeEHHHHhCCeEEEEEEEeeecC---CCCCCcccC------CC-CCccCCCCCCCcEEEEEEecccceEEEEE
Confidence            466889999999999999999999999999   999999986      44 4689999999999887652   5566778


Q ss_pred             eCCCCCCCcee---cCCCCCCceeeCc
Q 031276          128 KCINCDGVGSL---TCTTCQGTGIQPR  151 (162)
Q Consensus       128 ~C~~C~G~G~v---~C~~C~G~G~v~~  151 (162)
                      +|+.|+|+|++   +|+.|+|.|++..
T Consensus       207 ~C~~C~G~G~~~~~~C~~C~G~g~v~~  233 (397)
T PRK14281        207 ACPTCGGEGRVVKDRCPACYGEGIKQG  233 (397)
T ss_pred             ecCCCcceeeeeCCCCCCCCCCccEec
Confidence            99999999998   8999999998743

>TIGR02349 DnaJ_bact chaperone protein DnaJ

Probab=99.47  E-value=8.6e-14  Score=121.35  Aligned_cols=92  Identities=23%  Similarity=0.422  Sum_probs=80.8

Q ss_pred             cccEEEEEEeeeeeeeecceeEEEEeecCCCcccCcccccccCccccCCCCccccCCCCCCcceEEEEeC---CCcccee
Q 031276           51 QNTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSFCMGTGSVTVELG---GDEREFS  127 (162)
Q Consensus        51 ~~T~~~i~i~~~eaa~G~~~~i~~~~~~~c~~~~~C~GsG~~~C~~~C~G~G~~~C~~C~GtG~v~~~~~---g~~~~~~  127 (162)
                      ++..+.+.|+|+|++.|..+++.+++.+.|   ..|+|+|..      .+....+|..|+|+|.+...++   |.++...
T Consensus       117 ~d~~~~l~vsLee~~~G~~~~i~~~r~~~C---~~C~G~G~~------~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~  187 (354)
T TIGR02349       117 EDLRYDLELTFEEAVFGVEKEIEIPRKESC---ETCHGTGAK------PGTDPKTCPTCGGTGQVRRQQGTPFGFFQQQQ  187 (354)
T ss_pred             CCeEEEEEEEHHHHhCCeeEEEEeecCCcC---CCCCCCCCC------CCCCCccCCCCCCeeEEEEEEeccCCceEEEE
Confidence            467899999999999999999999999999   999999985      5555789999999999887763   4566778


Q ss_pred             eCCCCCCCcee---cCCCCCCceeeCc
Q 031276          128 KCINCDGVGSL---TCTTCQGTGIQPR  151 (162)
Q Consensus       128 ~C~~C~G~G~v---~C~~C~G~G~v~~  151 (162)
                      +|+.|+|+|++   +|+.|+|.|.+..
T Consensus       188 ~C~~C~G~G~~~~~~C~~C~G~g~v~~  214 (354)
T TIGR02349       188 TCPTCGGEGKIIKEPCSTCKGKGRVKE  214 (354)
T ss_pred             ecCCCCCcceecCCCCCCCCCCcEecc
Confidence            99999999998   8999999997743

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.

>PRK14289 chaperone protein DnaJ; Provisional

Probab=99.45  E-value=1.6e-13  Score=121.37  Aligned_cols=92  Identities=25%  Similarity=0.452  Sum_probs=80.7

Q ss_pred             cccEEEEEEeeeeeeeecceeEEEEeecCCCcccCcccccccCccccCCCCccccCCCCCCcceEEEEeC---CCcccee
Q 031276           51 QNTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSFCMGTGSVTVELG---GDEREFS  127 (162)
Q Consensus        51 ~~T~~~i~i~~~eaa~G~~~~i~~~~~~~c~~~~~C~GsG~~~C~~~C~G~G~~~C~~C~GtG~v~~~~~---g~~~~~~  127 (162)
                      ++..+.+.|+|+|++.|..+++.+.+.+.|   ..|+|+|+.      .+.....|+.|+|+|.++..++   |.++...
T Consensus       128 ~di~~~l~vsLee~~~G~~~~i~~~r~~~C---~~C~G~G~~------~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~  198 (386)
T PRK14289        128 SDLRVKVKLNLKEISTGVEKKFKVKKYVPC---SHCHGTGAE------GNNGSETCPTCKGSGSVTRVQNTILGTMQTQS  198 (386)
T ss_pred             CCeEEEEEEEHHHhhCCeEEEEEEEeeccc---CCCCCCCCC------CCCCCCcCCCCcCeEEEEEEEecccceEEEEE
Confidence            467889999999999999999999999999   999999986      4555689999999999887663   5566788


Q ss_pred             eCCCCCCCcee---cCCCCCCceeeCc
Q 031276          128 KCINCDGVGSL---TCTTCQGTGIQPR  151 (162)
Q Consensus       128 ~C~~C~G~G~v---~C~~C~G~G~v~~  151 (162)
                      +|+.|+|.|++   .|..|+|.|.+..
T Consensus       199 ~C~~C~G~G~~~~~~C~~C~G~g~v~~  225 (386)
T PRK14289        199 TCPTCNGEGKIIKKKCKKCGGEGIVYG  225 (386)
T ss_pred             ecCCCCccccccCcCCCCCCCCcEEee
Confidence            99999999998   8999999998743

>PRK14283 chaperone protein DnaJ; Provisional

Probab=99.41  E-value=4.5e-13  Score=118.30  Aligned_cols=92  Identities=22%  Similarity=0.421  Sum_probs=81.0

Q ss_pred             cccEEEEEEeeeeeeeecceeEEEEeecCCCcccCcccccccCccccCCCCccccCCCCCCcceEEEEeC---CCcccee
Q 031276           51 QNTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSFCMGTGSVTVELG---GDEREFS  127 (162)
Q Consensus        51 ~~T~~~i~i~~~eaa~G~~~~i~~~~~~~c~~~~~C~GsG~~~C~~~C~G~G~~~C~~C~GtG~v~~~~~---g~~~~~~  127 (162)
                      ++..+.+.|+|+|++.|..+++.+.+.+.|   ..|+|+|..      .+....+|+.|+|+|.+...+.   |.++...
T Consensus       120 ~di~~~l~vsLed~~~G~~~~i~~~r~~~C---~~C~G~G~~------~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~  190 (378)
T PRK14283        120 ADIYTEVEITLEEAASGVEKDIKVRHTKKC---PVCNGSRAE------PGSEVKTCPTCGGTGQVKQVRNTILGQMMNVT  190 (378)
T ss_pred             CCeEEEeeeeHHHHhCCcceEEEeeeeccC---CCCCccccC------CCCCCccCCCcCCccEEEEEEeccCceEEEEE
Confidence            356888999999999999999999999999   999999985      6677789999999999887652   5566778


Q ss_pred             eCCCCCCCcee---cCCCCCCceeeCc
Q 031276          128 KCINCDGVGSL---TCTTCQGTGIQPR  151 (162)
Q Consensus       128 ~C~~C~G~G~v---~C~~C~G~G~v~~  151 (162)
                      +|+.|+|.|+.   +|..|+|.|.+..
T Consensus       191 ~C~~C~G~G~~~~~~C~~C~G~g~v~~  217 (378)
T PRK14283        191 TCPDCQGEGKIVEKPCSNCHGKGVVRE  217 (378)
T ss_pred             ECCCCCccceecCCCCCCCCCceeecc
Confidence            99999999998   8999999998744

>PRK14290 chaperone protein DnaJ; Provisional

Probab=99.41  E-value=5.9e-13  Score=117.07  Aligned_cols=92  Identities=25%  Similarity=0.454  Sum_probs=78.4

Q ss_pred             CcccEEEEEEeeeeeeeecceeEEEEeecCCCcccCcccccccCccccCCCCccccCCCCCCcceEEEEeC-CCc--cce
Q 031276           50 DQNTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSFCMGTGSVTVELG-GDE--REF  126 (162)
Q Consensus        50 d~~T~~~i~i~~~eaa~G~~~~i~~~~~~~c~~~~~C~GsG~~~C~~~C~G~G~~~C~~C~GtG~v~~~~~-g~~--~~~  126 (162)
                      +++..+.|.|+|+|++.|..++|.+.+.+.|   ..|+|+|..      .+ ...+|+.|+|+|++...++ |.+  +..
T Consensus       122 ~~di~~~l~lsLee~~~G~~~~i~~~r~~~C---~~C~G~g~~------~~-~~~~C~~C~G~G~~~~~~~~g~~~~~~~  191 (365)
T PRK14290        122 DLDIYTNLDISLEDAYYGTEKRIKYRRNAMC---PDCSGTGAK------NG-KLITCPTCHGTGQQRIVRGQGFFRMVTV  191 (365)
T ss_pred             CCCEEEEEEecHHHhcCCEEEEEEeeecccC---CCCccccCC------CC-CCccCCCCCCcCEEEEEeccCeEEEEEE
Confidence            4577899999999999999999999999999   999999985      34 4579999999999877653 333  245


Q ss_pred             eeCCCCCCCcee---cCCCCCCceeeCc
Q 031276          127 SKCINCDGVGSL---TCTTCQGTGIQPR  151 (162)
Q Consensus       127 ~~C~~C~G~G~v---~C~~C~G~G~v~~  151 (162)
                      .+|+.|+|.|++   +|+.|+|.|++..
T Consensus       192 ~~C~~C~G~G~~~~~~C~~C~G~g~v~~  219 (365)
T PRK14290        192 TTCRTCGGRGRIPEEKCPRCNGTGTVVV  219 (365)
T ss_pred             EeCCCCCCceeEccCCCCCCCCceeEEE
Confidence            799999999988   8999999998744

>PRK14293 chaperone protein DnaJ; Provisional

Probab=99.40  E-value=5e-13  Score=117.87  Aligned_cols=92  Identities=22%  Similarity=0.381  Sum_probs=80.4

Q ss_pred             cccEEEEEEeeeeeeeecceeEEEEeecCCCcccCcccccccCccccCCCCccccCCCCCCcceEEEEeC---CCcccee
Q 031276           51 QNTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSFCMGTGSVTVELG---GDEREFS  127 (162)
Q Consensus        51 ~~T~~~i~i~~~eaa~G~~~~i~~~~~~~c~~~~~C~GsG~~~C~~~C~G~G~~~C~~C~GtG~v~~~~~---g~~~~~~  127 (162)
                      ++-.+.+.|+|+|++.|..+.+.+.+.+.|   ..|+|+|..      .+....+|+.|+|+|+++..++   |.++...
T Consensus       117 ~di~~~l~vsLee~~~G~~k~i~~~r~~~C---~~C~G~G~~------~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~  187 (374)
T PRK14293        117 DDLRYDLKLDFREAIFGGEKEIRIPHLETC---ETCRGSGAK------PGTGPTTCSTCGGAGQVRRATRTPFGSFTQVS  187 (374)
T ss_pred             CCeEEEEEeeHHHHhCCceEEEEeeccccC---CCCCCcCCC------CCCCCeeCCCCCCcceEEEEEecCcceEEEEe
Confidence            355788999999999999999999999999   999999986      5667789999999999887663   5566778


Q ss_pred             eCCCCCCCcee---cCCCCCCceeeCc
Q 031276          128 KCINCDGVGSL---TCTTCQGTGIQPR  151 (162)
Q Consensus       128 ~C~~C~G~G~v---~C~~C~G~G~v~~  151 (162)
                      +|+.|+|.|++   +|..|+|.|++..
T Consensus       188 ~C~~C~G~G~~~~~~C~~C~G~g~v~~  214 (374)
T PRK14293        188 ECPTCNGTGQVIEDPCDACGGQGVKQV  214 (374)
T ss_pred             eCCCCCcceeEeccCCCCCCCCccccc
Confidence            99999999998   8999999998744

>PTZ00037 DnaJ_C chaperone protein; Provisional

Probab=99.40  E-value=5e-13  Score=120.29  Aligned_cols=91  Identities=22%  Similarity=0.460  Sum_probs=76.7

Q ss_pred             cccEEEEEEeeeeeeeecceeEEEEeecCCCcccCcccccccCccccCCCCccccCCCCCCcceEEEEeC-CCc--ccee
Q 031276           51 QNTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSFCMGTGSVTVELG-GDE--REFS  127 (162)
Q Consensus        51 ~~T~~~i~i~~~eaa~G~~~~i~~~~~~~c~~~~~C~GsG~~~C~~~C~G~G~~~C~~C~GtG~v~~~~~-g~~--~~~~  127 (162)
                      ++..+.|.|+|+|++.|..+++.+.+.+.|   ..|+|+|+.      .+ ...+|+.|+|+|.+..... |.+  +...
T Consensus       124 ~di~~~l~vtLee~~~G~~~~i~~~r~~~C---~~C~G~G~~------~~-~~~~C~~C~G~G~~~~~~~~g~~~~q~~~  193 (421)
T PTZ00037        124 EDIVSHLKVTLEQIYNGAMRKLAINKDVIC---ANCEGHGGP------KD-AFVDCKLCNGQGIRVQIRQMGSMIHQTQS  193 (421)
T ss_pred             CCEEEEeeeeHHHHhCCCceEEEeeccccc---cccCCCCCC------CC-CCccCCCCCCCCeEEEEEeecceeeEEEE
Confidence            467889999999999999999999999999   999999974      33 4589999999998655442 322  4678


Q ss_pred             eCCCCCCCcee-----cCCCCCCceeeCc
Q 031276          128 KCINCDGVGSL-----TCTTCQGTGIQPR  151 (162)
Q Consensus       128 ~C~~C~G~G~v-----~C~~C~G~G~v~~  151 (162)
                      +|+.|+|+|++     +|+.|+|.|++..
T Consensus       194 ~C~~C~G~G~~i~~~~~C~~C~G~g~v~~  222 (421)
T PTZ00037        194 TCNSCNGQGKIIPESKKCKNCSGKGVKKT  222 (421)
T ss_pred             eCCCCCCcceeccccccCCcCCCcceeee
Confidence            99999999997     6999999998753

>PRK14292 chaperone protein DnaJ; Provisional

Probab=99.36  E-value=1.3e-12  Score=114.81  Aligned_cols=91  Identities=20%  Similarity=0.357  Sum_probs=78.7

Q ss_pred             cccEEEEEEeeeeeeeecceeEEEEeecCCCcccCcccccccCccccCCC-CccccCCCCCCcceEEEEe---CCCccce
Q 031276           51 QNTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLP-LQWLRCSFCMGTGSVTVEL---GGDEREF  126 (162)
Q Consensus        51 ~~T~~~i~i~~~eaa~G~~~~i~~~~~~~c~~~~~C~GsG~~~C~~~C~G-~G~~~C~~C~GtG~v~~~~---~g~~~~~  126 (162)
                      ++..+.+.|+|+|+++|..+++.+++.+.|   ..|+|+|..      .+ ....+|..|+|+|+++..+   .|.++..
T Consensus       113 ~d~~~~l~~sLee~~~G~~~~v~~~r~~~C---~~C~G~G~~------~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~  183 (371)
T PRK14292        113 DDLETEARITLEQARAGEEVEVEVDRLTEC---EHCHGSRTE------PGGKPPKTCPTCRGAGAVRAQARTIFGVVETQ  183 (371)
T ss_pred             CCeEEEEeccHHHHcCCeEEEEEEEeeecC---CCCcccccC------CCCCCCccCCCCCCccEEEEEEeccCceEEEe
Confidence            466888999999999999999999999999   999999985      33 2368999999999988665   2555667


Q ss_pred             eeCCCCCCCcee---cCCCCCCceeeC
Q 031276          127 SKCINCDGVGSL---TCTTCQGTGIQP  150 (162)
Q Consensus       127 ~~C~~C~G~G~v---~C~~C~G~G~v~  150 (162)
                      .+|+.|+|.|..   +|+.|.|.|++.
T Consensus       184 ~~C~~C~G~G~~~~~~C~~C~G~g~v~  210 (371)
T PRK14292        184 QPCPTCRGEGQIITDPCTVCRGRGRTL  210 (371)
T ss_pred             eecCCCcccceecCCCCCCCCCceEEe
Confidence            899999999998   899999999874

>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation

Probab=99.26  E-value=1e-11  Score=85.35  Aligned_cols=58  Identities=31%  Similarity=0.600  Sum_probs=46.8

Q ss_pred             cCcccccccCccccCCCCccccCCCCCCcceEEEEeC---CCccceeeCCCCCCCcee----cCCCCCCce
Q 031276           84 FPIFGAGQARKYSAMLPLQWLRCSFCMGTGSVTVELG---GDEREFSKCINCDGVGSL----TCTTCQGTG  147 (162)
Q Consensus        84 ~~C~GsG~~~C~~~C~G~G~~~C~~C~GtG~v~~~~~---g~~~~~~~C~~C~G~G~v----~C~~C~G~G  147 (162)
                      ..|+|+|++      .+..+.+|+.|+|+|++...++   +.++...+|+.|+|+|++    +|+.|+|.|
T Consensus         2 ~~C~G~G~~------~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i~~~~C~~C~G~g   66 (66)
T PF00684_consen    2 PKCNGTGAK------PGKKPKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKIIEKDPCKTCKGSG   66 (66)
T ss_dssp             CCCTTTSB-------STTT-EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE-TSSB-SSSTTSS
T ss_pred             CcCCCcccC------CCCCCcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEECCCCCCCCCCcC
Confidence            789999996      6788899999999999988763   556788999999999999    599999986

DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.

>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.81  E-value=4.6e-09  Score=92.84  Aligned_cols=91  Identities=22%  Similarity=0.375  Sum_probs=77.6

Q ss_pred             CcccEEEEEEeeeeeeeecceeEEEEeecCCCcccCcccccccCccccCCCCccccCCCCCCcceEEEEeCC---Cc-cc
Q 031276           50 DQNTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSFCMGTGSVTVELGG---DE-RE  125 (162)
Q Consensus        50 d~~T~~~i~i~~~eaa~G~~~~i~~~~~~~c~~~~~C~GsG~~~C~~~C~G~G~~~C~~C~GtG~v~~~~~g---~~-~~  125 (162)
                      -.++.+.|+|+|+|.+.|...++++.++..|   ..|+|+|-.      .++- ..|..|.|+|.....++.   .. +.
T Consensus       100 g~~~~~~~~~~Le~~y~G~s~kl~l~~~~iC---s~C~GsGgk------sg~~-~~C~~C~GsGv~~~~~~~gPg~~qs~  169 (337)
T KOG0712|consen  100 GKDVVHQLKVTLEELYMGKSKKLFLSRNFIC---SKCSGSGGK------SGSA-PKCTTCRGSGVQTRTRQMGPGMVQSP  169 (337)
T ss_pred             CCCceEEEEEEHHHhhcCCccceecccCccC---CcCCCCCCC------CCCC-CCCCCCCCCCceeEEEeccccccccc
Confidence            6789999999999999999999999999999   999999986      2322 479999999987766632   22 46


Q ss_pred             eeeCCCCCCCcee-----cCCCCCCceeeC
Q 031276          126 FSKCINCDGVGSL-----TCTTCQGTGIQP  150 (162)
Q Consensus       126 ~~~C~~C~G~G~v-----~C~~C~G~G~v~  150 (162)
                      +..|..|+|.|..     .|+.|.|.+++.
T Consensus       170 q~~C~~C~G~G~~~~~kd~C~~C~G~~~v~  199 (337)
T KOG0712|consen  170 QLVCDSCNGSGETISLKDRCKTCSGAKVVR  199 (337)
T ss_pred             eeEeccCCCccccccccccCcccccchhhh
Confidence            7899999999997     899999999763

>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]

Probab=98.70  E-value=6.4e-09  Score=92.07  Aligned_cols=88  Identities=24%  Similarity=0.423  Sum_probs=61.3

Q ss_pred             eeecceeEEEEeecCCCcccCcccccccCccccCCCCc--------cccCCCCCC-----cceEEEEeCCCccceeeCCC
Q 031276           65 AVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQ--------WLRCSFCMG-----TGSVTVELGGDEREFSKCIN  131 (162)
Q Consensus        65 a~G~~~~i~~~~~~~c~~~~~C~GsG~~~C~~~C~G~G--------~~~C~~C~G-----tG~v~~~~~g~~~~~~~C~~  131 (162)
                      ..|+.-++-+.....=.+|+.|+|.|+..|+. |+|.|        ...|..|-|     .|+-..-..-..++..+|++
T Consensus       172 f~~~~~~~~vphs~~v~~ch~c~gRG~~vc~g-c~g~G~~~y~~~~~m~c~sc~G~~~~k~gt~~~C~~C~G~G~~~C~t  250 (406)
T KOG2813|consen  172 FSGVAHPAVVPHSMIVTFCHACLGRGAMVCHG-CSGSGSNSYGIGTPMHCMSCTGVPPPKIGTHDLCYMCHGRGIKECHT  250 (406)
T ss_pred             ccccccceeccchHhhhhhhcccCCCceeccC-cCCCCccccccCcceecccccCCCCCCCCccchhhhccCCCcccCCc
Confidence            34444455555544434558888898888888 88888        778888877     11111000012347789999


Q ss_pred             CCCCceecCCCCCCceeeCccc
Q 031276          132 CDGVGSLTCTTCQGTGIQPRYL  153 (162)
Q Consensus       132 C~G~G~v~C~~C~G~G~v~~~l  153 (162)
                      |+|+|+++|.+|.|+|.+..|+
T Consensus       251 C~grG~k~C~TC~gtgsll~~t  272 (406)
T KOG2813|consen  251 CKGRGKKPCTTCSGTGSLLNYT  272 (406)
T ss_pred             ccCCCCcccccccCccceeeeE
Confidence            9999999999999999998886

>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.39  E-value=9.1e-08  Score=82.64  Aligned_cols=92  Identities=24%  Similarity=0.424  Sum_probs=78.9

Q ss_pred             CcccEEEEEEeeeeeeeecceeEEEEeecCCCcccCcccccccCccccCCCCccccCCCCCCcceEEEEeCCCccceeeC
Q 031276           50 DQNTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSFCMGTGSVTVELGGDEREFSKC  129 (162)
Q Consensus        50 d~~T~~~i~i~~~eaa~G~~~~i~~~~~~~c~~~~~C~GsG~~~C~~~C~G~G~~~C~~C~GtG~v~~~~~g~~~~~~~C  129 (162)
                      |.+..+...++|++|+.|..+.+.|.....|   ..|.|.|.+      .|.....|..|+|+|.+.....+.+... +|
T Consensus       137 ~~~~~~d~~~~f~~A~~g~~~~~~~~~~~~~---~t~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~f~~~-~~  206 (288)
T KOG0715|consen  137 DKDQYYDLSLDFKEAVRGSKKRISFNVLSDC---ETCFGSGAE------EGAKRESCKTCSGRGLVSNPKEDPFILY-TC  206 (288)
T ss_pred             CcccccccccCHHHHhhccccceEEEeeccc---ccccCcCcc------cccccccchhhhCcccccccccCCccee-ec
Confidence            4456788999999999999999999999998   999999976      7889999999999997765444555455 89


Q ss_pred             CCCCCCcee---cCCCCCCceeeCc
Q 031276          130 INCDGVGSL---TCTTCQGTGIQPR  151 (162)
Q Consensus       130 ~~C~G~G~v---~C~~C~G~G~v~~  151 (162)
                      ..|.|.|.+   .|..|.|.|++..
T Consensus       207 ~~c~~~~~~~~~~c~~~~g~~~v~~  231 (288)
T KOG0715|consen  207 SYCLGRGLVLRDNCQACSGAGQVRR  231 (288)
T ss_pred             ccccccceeccchHHHhhcchhhhh
Confidence            999999999   6999999996643

>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]

Probab=98.02  E-value=2e-06  Score=76.45  Aligned_cols=62  Identities=27%  Similarity=0.455  Sum_probs=48.1

Q ss_pred             ccccCccccCCCCccccCCCCCCcce--------EEEEeC-C----CccceeeCCCCCCCceecCCCCCCceeeCc
Q 031276           89 AGQARKYSAMLPLQWLRCSFCMGTGS--------VTVELG-G----DEREFSKCINCDGVGSLTCTTCQGTGIQPR  151 (162)
Q Consensus        89 sG~~~C~~~C~G~G~~~C~~C~GtG~--------v~~~~~-g----~~~~~~~C~~C~G~G~v~C~~C~G~G~v~~  151 (162)
                      .-.+.|+. |.|.|...|+.|+|+|.        +++..- |    .......|..|+|+|+.+|++|+|.|.++.
T Consensus       185 ~~v~~ch~-c~gRG~~vc~gc~g~G~~~y~~~~~m~c~sc~G~~~~k~gt~~~C~~C~G~G~~~C~tC~grG~k~C  259 (406)
T KOG2813|consen  185 MIVTFCHA-CLGRGAMVCHGCSGSGSNSYGIGTPMHCMSCTGVPPPKIGTHDLCYMCHGRGIKECHTCKGRGKKPC  259 (406)
T ss_pred             Hhhhhhhc-ccCCCceeccCcCCCCccccccCcceecccccCCCCCCCCccchhhhccCCCcccCCcccCCCCccc
Confidence            34456888 99999999999999993        333321 2    122456899999999999999999998865

>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]

Probab=97.88  E-value=6.7e-06  Score=77.70  Aligned_cols=65  Identities=26%  Similarity=0.314  Sum_probs=48.9

Q ss_pred             cccCcccccccCccccCCCCccccCCCCCCcceEEEEeC------------CCccceeeCCCCCCCcee----cCCCCCC
Q 031276           82 YDFPIFGAGQARKYSAMLPLQWLRCSFCMGTGSVTVELG------------GDEREFSKCINCDGVGSL----TCTTCQG  145 (162)
Q Consensus        82 ~~~~C~GsG~~~C~~~C~G~G~~~C~~C~GtG~v~~~~~------------g~~~~~~~C~~C~G~G~v----~C~~C~G  145 (162)
                      .|+.|+|.|..     |-  +...|+.|+|+|++....-            ++.....+|+.|+|.|.+    +|+.|.|
T Consensus         4 ~C~~C~g~G~i-----~v--~~e~c~vc~gtG~~~~~d~k~~~~~~~~~~D~~~~~~~pc~~c~gkG~V~v~~~c~~c~G   76 (715)
T COG1107           4 KCPECGGKGKI-----VV--GEEECPVCHGTGFSDDFDPKGVANLSRETVDLFASFEIPCPKCRGKGTVTVYDTCPECGG   76 (715)
T ss_pred             cccccCCCceE-----ee--eeeecccccccccccccChhhhhhhhhccccccccCCCCCCeeccceeEEEEeecccCCC
Confidence            34999999986     22  2378999999999853321            112235699999999999    7999999


Q ss_pred             ceeeCccc
Q 031276          146 TGIQPRYL  153 (162)
Q Consensus       146 ~G~v~~~l  153 (162)
                      +|.+..|-
T Consensus        77 ~gkv~~c~   84 (715)
T COG1107          77 TGKVLTCD   84 (715)
T ss_pred             ceeEEeec
Confidence            99987653

>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation

Probab=97.75  E-value=2.3e-05  Score=53.72  Aligned_cols=39  Identities=41%  Similarity=0.951  Sum_probs=28.0

Q ss_pred             CCCCCCcceEEEEeCCCccceeeCCCCCCCcee---------------cCCCCCCceeeC
Q 031276          106 CSFCMGTGSVTVELGGDEREFSKCINCDGVGSL---------------TCTTCQGTGIQP  150 (162)
Q Consensus       106 C~~C~GtG~v~~~~~g~~~~~~~C~~C~G~G~v---------------~C~~C~G~G~v~  150 (162)
                      |+.|+|+|...    +  ....+|+.|+|+|.+               +|+.|+|+|++.
T Consensus         1 C~~C~G~G~~~----~--~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i   54 (66)
T PF00684_consen    1 CPKCNGTGAKP----G--KKPKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKII   54 (66)
T ss_dssp             -CCCTTTSB-S----T--TT-EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE-
T ss_pred             CCcCCCcccCC----C--CCCcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEE
Confidence            78999999853    1  246799999999987               699999999874

DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.

>PLN03165 chaperone protein dnaJ-related; Provisional

Probab=97.61  E-value=9.9e-05  Score=56.33  Aligned_cols=44  Identities=30%  Similarity=0.510  Sum_probs=36.6

Q ss_pred             cccCcccccccCccccCCCCcc------------ccCCCCCCcceEEEEeCCCccceeeCCCCCCCcee
Q 031276           82 YDFPIFGAGQARKYSAMLPLQW------------LRCSFCMGTGSVTVELGGDEREFSKCINCDGVGSL  138 (162)
Q Consensus        82 ~~~~C~GsG~~~C~~~C~G~G~------------~~C~~C~GtG~v~~~~~g~~~~~~~C~~C~G~G~v  138 (162)
                      .|..|+|+|.+.|.. |.|+|.            .+|+.|+|+|++            .|..|.|.|.+
T Consensus        43 ~C~~C~GsG~~~C~~-C~G~G~v~~~~~g~~q~~~~C~~C~G~Gk~------------~C~~C~G~G~~   98 (111)
T PLN03165         43 PCFPCSGTGAQVCRF-CVGSGNVTVELGGGEKEVSKCINCDGAGSL------------TCTTCQGSGIQ   98 (111)
T ss_pred             CCCCCCCCCCcCCCC-CcCcCeEEEEeCCcEEEEEECCCCCCccee------------eCCCCCCCEEE
Confidence            349999999999999 999763            378889988863            39999999986

>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

Probab=97.39  E-value=8.5e-05  Score=66.80  Aligned_cols=42  Identities=40%  Similarity=0.911  Sum_probs=33.1

Q ss_pred             cccCCCCCCcceEEEEeCCCccceeeCCCCCCCcee-------------cCCCCCCceeeC
Q 031276          103 WLRCSFCMGTGSVTVELGGDEREFSKCINCDGVGSL-------------TCTTCQGTGIQP  150 (162)
Q Consensus       103 ~~~C~~C~GtG~v~~~~~g~~~~~~~C~~C~G~G~v-------------~C~~C~G~G~v~  150 (162)
                      ...|..|+|+|...    |  ....+|++|+|+|++             +|++|+|+|.+.
T Consensus       142 ~~~C~~C~GsGak~----g--t~~~tC~tC~G~G~v~~~~~~g~~~~~~~C~~C~G~G~~i  196 (371)
T COG0484         142 SVTCSTCHGSGAKP----G--TDPKTCPTCNGSGQVRTVQRTGFFSFQQTCPTCNGTGKII  196 (371)
T ss_pred             eeECCcCCCCCCCC----C--CCCCcCCCCCCcCeEEEEEeeeEEEEEEECCCCccceeEC
Confidence            47899999998764    2  246789999999964             699999999764

>PRK14279 chaperone protein DnaJ; Provisional

Probab=96.85  E-value=0.00052  Score=61.45  Aligned_cols=42  Identities=33%  Similarity=0.736  Sum_probs=34.0

Q ss_pred             cccCCCCCCcceEEEEeCCCccceeeCCCCCCCcee-----------cCCCCCCceeeC
Q 031276          103 WLRCSFCMGTGSVTVELGGDEREFSKCINCDGVGSL-----------TCTTCQGTGIQP  150 (162)
Q Consensus       103 ~~~C~~C~GtG~v~~~~~g~~~~~~~C~~C~G~G~v-----------~C~~C~G~G~v~  150 (162)
                      ...|+.|+|+|....      ....+|+.|+|+|.+           +|+.|+|+|++.
T Consensus       173 ~~~C~~C~G~G~~~~------~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~i  225 (392)
T PRK14279        173 PAPCTTCHGSGARPG------TSPKVCPTCNGSGVISRNQGAFGFSEPCTDCRGTGSII  225 (392)
T ss_pred             cccCCCCccccccCC------CCCCCCCCCcceEEEEEEecceEEEEecCCCCceeEEe
Confidence            368999999998541      134689999999975           699999999873

>PRK14296 chaperone protein DnaJ; Provisional

Probab=96.78  E-value=0.00068  Score=60.32  Aligned_cols=42  Identities=33%  Similarity=0.872  Sum_probs=33.6

Q ss_pred             cccCCCCCCcceEEEEeCCCccceeeCCCCCCCcee---------------cCCCCCCceeeC
Q 031276          103 WLRCSFCMGTGSVTVELGGDEREFSKCINCDGVGSL---------------TCTTCQGTGIQP  150 (162)
Q Consensus       103 ~~~C~~C~GtG~v~~~~~g~~~~~~~C~~C~G~G~v---------------~C~~C~G~G~v~  150 (162)
                      ...|..|+|+|...    +  ....+|+.|+|+|.+               +|+.|+|+|++.
T Consensus       149 ~~~C~~C~G~G~~~----~--~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~~  205 (372)
T PRK14296        149 LTNCSKCFGSGAES----N--SDIHICNNCHGTGEVLVQKNMGFFQFQQSAKCNVCNGAGKII  205 (372)
T ss_pred             eeccCCCCCCccCC----C--CCCccCCCCCCCceEEEEEeccceEEEEEecCCCcCCcceee
Confidence            36899999999753    1  134679999999964               799999999874

>PRK14284 chaperone protein DnaJ; Provisional

Probab=96.69  E-value=0.00093  Score=59.68  Aligned_cols=41  Identities=32%  Similarity=0.854  Sum_probs=33.3

Q ss_pred             cccCCCCCCcceEEEEeCCCccceeeCCCCCCCcee-----------cCCCCCCceee
Q 031276          103 WLRCSFCMGTGSVTVELGGDEREFSKCINCDGVGSL-----------TCTTCQGTGIQ  149 (162)
Q Consensus       103 ~~~C~~C~GtG~v~~~~~g~~~~~~~C~~C~G~G~v-----------~C~~C~G~G~v  149 (162)
                      ...|..|+|+|...    +  ....+|+.|+|+|.+           +|+.|+|+|++
T Consensus       158 ~~~C~~C~G~G~~~----~--~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~  209 (391)
T PRK14284        158 YKSCDACSGSGANS----S--QGIKVCDRCKGSGQVVQSRGFFSMASTCPECGGEGRV  209 (391)
T ss_pred             eccCCCCcccccCC----C--CCCeecCccCCeeEEEEEeceEEEEEECCCCCCCCcc
Confidence            36899999999743    1  135689999999983           79999999976

>PRK14300 chaperone protein DnaJ; Provisional

Probab=96.59  E-value=0.001  Score=59.10  Aligned_cols=42  Identities=38%  Similarity=0.897  Sum_probs=33.7

Q ss_pred             cccCCCCCCcceEEEEeCCCccceeeCCCCCCCcee-----------cCCCCCCceeeC
Q 031276          103 WLRCSFCMGTGSVTVELGGDEREFSKCINCDGVGSL-----------TCTTCQGTGIQP  150 (162)
Q Consensus       103 ~~~C~~C~GtG~v~~~~~g~~~~~~~C~~C~G~G~v-----------~C~~C~G~G~v~  150 (162)
                      ...|+.|+|+|...    +  ....+|+.|+|+|.+           +|+.|+|+|++.
T Consensus       145 ~~~C~~C~G~g~~~----~--~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~  197 (372)
T PRK14300        145 EVKCDTCHGSGSEK----G--ETVTTCDACSGVGATRMQQGFFTIEQACHKCQGNGQII  197 (372)
T ss_pred             ccccCCCCCcccCC----C--CCCccCCCccCeEEEEEeeceEEEEEeCCCCCccceEe
Confidence            37899999999743    1  134689999999975           699999999874

>PRK14298 chaperone protein DnaJ; Provisional

Probab=96.59  E-value=0.0012  Score=58.90  Aligned_cols=42  Identities=43%  Similarity=0.909  Sum_probs=33.2

Q ss_pred             cccCCCCCCcceEEEEeCCCccceeeCCCCCCCcee---------------cCCCCCCceeeC
Q 031276          103 WLRCSFCMGTGSVTVELGGDEREFSKCINCDGVGSL---------------TCTTCQGTGIQP  150 (162)
Q Consensus       103 ~~~C~~C~GtG~v~~~~~g~~~~~~~C~~C~G~G~v---------------~C~~C~G~G~v~  150 (162)
                      ...|..|+|+|...    +  ....+|+.|+|+|.+               +|+.|+|+|++.
T Consensus       141 ~~~C~~C~G~G~~~----~--~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~  197 (377)
T PRK14298        141 AERCSTCSGTGAKP----G--TSPKRCPTCGGTGQVTTTRSTPLGQFVTTTTCSTCHGRGQVI  197 (377)
T ss_pred             eccCCCCCCCcccC----C--CCCCcCCCCCCccEEEEEEecCceeEEEEEeCCCCCCCCccc
Confidence            36899999999753    1  134679999999964               699999999763

>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.59  E-value=0.003  Score=55.04  Aligned_cols=50  Identities=28%  Similarity=0.565  Sum_probs=42.7

Q ss_pred             CccccCCCCccccCCCCCCcceEEEEeCCCccceeeCCCCCCCceecCCCCC
Q 031276           93 RKYSAMLPLQWLRCSFCMGTGSVTVELGGDEREFSKCINCDGVGSLTCTTCQ  144 (162)
Q Consensus        93 ~C~~~C~G~G~~~C~~C~GtG~v~~~~~g~~~~~~~C~~C~G~G~v~C~~C~  144 (162)
                      .|.. |.|.....|..|||+=++.... .......+|+.|+=-|.++|+.|.
T Consensus       231 ~C~~-CGg~rFlpC~~C~GS~kv~~~~-~~~~~~~rC~~CNENGLvrCp~Cs  280 (281)
T KOG2824|consen  231 VCES-CGGARFLPCSNCHGSCKVHEEE-EDDGGVLRCLECNENGLVRCPVCS  280 (281)
T ss_pred             cCCC-cCCcceEecCCCCCceeeeeec-cCCCcEEECcccCCCCceeCCccC
Confidence            4777 9999999999999999888642 334467899999999999999995

>PRK10767 chaperone protein DnaJ; Provisional

Probab=96.56  E-value=0.0012  Score=58.41  Aligned_cols=42  Identities=33%  Similarity=0.797  Sum_probs=33.5

Q ss_pred             cccCCCCCCcceEEEEeCCCccceeeCCCCCCCcee-----------cCCCCCCceeeC
Q 031276          103 WLRCSFCMGTGSVTVELGGDEREFSKCINCDGVGSL-----------TCTTCQGTGIQP  150 (162)
Q Consensus       103 ~~~C~~C~GtG~v~~~~~g~~~~~~~C~~C~G~G~v-----------~C~~C~G~G~v~  150 (162)
                      ...|+.|+|+|....      .....|+.|+|+|.+           +|+.|+|+|++.
T Consensus       142 ~~~C~~C~G~G~~~~------~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~  194 (371)
T PRK10767        142 LVTCDTCHGSGAKPG------TSPKTCPTCHGAGQVRMQQGFFTVQQTCPTCHGRGKII  194 (371)
T ss_pred             cccCCCCCCcccCCC------CCCccCCCCCCeeEEEEeeceEEEEEeCCCCCCceeEC
Confidence            368999999997531      124589999999976           599999999873

>PRK14285 chaperone protein DnaJ; Provisional

Probab=96.56  E-value=0.001  Score=59.00  Aligned_cols=42  Identities=36%  Similarity=0.748  Sum_probs=33.0

Q ss_pred             cccCCCCCCcceEEEEeCCCccceeeCCCCCCCcee-----------cCCCCCCceeeC
Q 031276          103 WLRCSFCMGTGSVTVELGGDEREFSKCINCDGVGSL-----------TCTTCQGTGIQP  150 (162)
Q Consensus       103 ~~~C~~C~GtG~v~~~~~g~~~~~~~C~~C~G~G~v-----------~C~~C~G~G~v~  150 (162)
                      ...|..|+|+|...    +  ....+|+.|+|+|.+           +|+.|.|+|.+.
T Consensus       146 ~~~C~~C~G~G~~~----~--~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~  198 (365)
T PRK14285        146 NMLCESCLGKKSEK----G--TSPSICNMCNGSGRVMQGGGFFRVTTTCPKCYGNGKII  198 (365)
T ss_pred             cccCCCCCCcccCC----C--CCCccCCCccCceeEEecCceeEEeeecCCCCCccccc
Confidence            36899999999743    1  134579999999964           799999999773

>PRK14286 chaperone protein DnaJ; Provisional

Probab=96.55  E-value=0.0012  Score=58.76  Aligned_cols=42  Identities=36%  Similarity=0.849  Sum_probs=33.5

Q ss_pred             cccCCCCCCcceEEEEeCCCccceeeCCCCCCCcee-----------cCCCCCCceeeC
Q 031276          103 WLRCSFCMGTGSVTVELGGDEREFSKCINCDGVGSL-----------TCTTCQGTGIQP  150 (162)
Q Consensus       103 ~~~C~~C~GtG~v~~~~~g~~~~~~~C~~C~G~G~v-----------~C~~C~G~G~v~  150 (162)
                      ...|..|+|+|...    +  ....+|+.|+|+|.+           +|+.|+|+|++.
T Consensus       150 ~~~C~~C~G~G~~~----~--~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~  202 (372)
T PRK14286        150 LESCVDCNGSGASK----G--SSPTTCPDCGGSGQIRRTQGFFSVATTCPTCRGKGTVI  202 (372)
T ss_pred             cccCCCCcCCCcCC----C--CCCccCCCCcCeEEEEEEeceEEEEEeCCCCCceeeEe
Confidence            36899999999753    1  124679999999965           699999999874

>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]

Probab=96.55  E-value=0.0019  Score=61.54  Aligned_cols=47  Identities=32%  Similarity=0.699  Sum_probs=39.7

Q ss_pred             ccCCCCCCcceEEEEeCCCccceeeCCCCCCCcee------------------------cCCCCCCceeeCccccccc
Q 031276          104 LRCSFCMGTGSVTVELGGDEREFSKCINCDGVGSL------------------------TCTTCQGTGIQPRYLDRRE  157 (162)
Q Consensus       104 ~~C~~C~GtG~v~~~~~g~~~~~~~C~~C~G~G~v------------------------~C~~C~G~G~v~~~l~~r~  157 (162)
                      .+|+.|+|+|++..       +...|+.|+|+|..                        +|+.|+|+|.+.-|....+
T Consensus         3 ~~C~~C~g~G~i~v-------~~e~c~vc~gtG~~~~~d~k~~~~~~~~~~D~~~~~~~pc~~c~gkG~V~v~~~c~~   73 (715)
T COG1107           3 KKCPECGGKGKIVV-------GEEECPVCHGTGFSDDFDPKGVANLSRETVDLFASFEIPCPKCRGKGTVTVYDTCPE   73 (715)
T ss_pred             ccccccCCCceEee-------eeeecccccccccccccChhhhhhhhhccccccccCCCCCCeeccceeEEEEeeccc
Confidence            68999999999874       45789999999864                        7999999999988876553

>PRK14301 chaperone protein DnaJ; Provisional

Probab=96.54  E-value=0.0012  Score=58.81  Aligned_cols=41  Identities=29%  Similarity=0.762  Sum_probs=33.1

Q ss_pred             ccCCCCCCcceEEEEeCCCccceeeCCCCCCCcee-----------cCCCCCCceeeC
Q 031276          104 LRCSFCMGTGSVTVELGGDEREFSKCINCDGVGSL-----------TCTTCQGTGIQP  150 (162)
Q Consensus       104 ~~C~~C~GtG~v~~~~~g~~~~~~~C~~C~G~G~v-----------~C~~C~G~G~v~  150 (162)
                      ..|..|+|+|....      ....+|+.|+|+|.+           +|+.|+|.|++.
T Consensus       145 ~~C~~C~G~G~~~~------~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~  196 (373)
T PRK14301        145 VTCDDCGGSGAAPG------TSPETCRHCGGSGQVRQSQGFFQIAVPCPVCRGEGRVI  196 (373)
T ss_pred             ccCCCCCCcccCCC------CCCcccCCccCeeEEEEEeeeEEEEEeCCCCCceeeec
Confidence            68999999998531      124579999999975           799999999874

>PRK14278 chaperone protein DnaJ; Provisional

Probab=96.52  E-value=0.0014  Score=58.46  Aligned_cols=42  Identities=31%  Similarity=0.729  Sum_probs=33.3

Q ss_pred             cccCCCCCCcceEEEEeCCCccceeeCCCCCCCcee---------------cCCCCCCceeeC
Q 031276          103 WLRCSFCMGTGSVTVELGGDEREFSKCINCDGVGSL---------------TCTTCQGTGIQP  150 (162)
Q Consensus       103 ~~~C~~C~GtG~v~~~~~g~~~~~~~C~~C~G~G~v---------------~C~~C~G~G~v~  150 (162)
                      ...|..|+|+|...    +  ....+|+.|+|+|.+               +|..|+|+|.+.
T Consensus       139 ~~~C~~C~G~G~~~----~--~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~  195 (378)
T PRK14278        139 AVLCDRCHGKGTAG----D--SKPVTCDTCGGRGEVQTVQRSFLGQVMTSRPCPTCRGVGEVI  195 (378)
T ss_pred             eccCCCCcCccCCC----C--CCceecCCccCceEEEEEEeccceeEEEEEECCCCCccceee
Confidence            36899999999743    1  134689999999963               699999999873

>PRK14297 chaperone protein DnaJ; Provisional

Probab=96.50  E-value=0.0013  Score=58.55  Aligned_cols=41  Identities=37%  Similarity=0.846  Sum_probs=33.2

Q ss_pred             ccCCCCCCcceEEEEeCCCccceeeCCCCCCCcee---------------cCCCCCCceeeC
Q 031276          104 LRCSFCMGTGSVTVELGGDEREFSKCINCDGVGSL---------------TCTTCQGTGIQP  150 (162)
Q Consensus       104 ~~C~~C~GtG~v~~~~~g~~~~~~~C~~C~G~G~v---------------~C~~C~G~G~v~  150 (162)
                      ..|..|+|+|...    +.  ...+|+.|+|.|.+               +|..|+|+|.+.
T Consensus       149 ~~C~~C~G~G~~~----~~--~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~  204 (380)
T PRK14297        149 ENCETCNGTGAKP----GT--SPKTCDKCGGTGQIRVQRNTPLGSFVSTTTCDKCGGSGKVI  204 (380)
T ss_pred             ccCCCcccccccC----CC--cCccCCCccCeEEEEEEEEcCCceeEEEEeCCCCCCCceEc
Confidence            6899999999853    21  25689999999964               699999999874

>PRK14282 chaperone protein DnaJ; Provisional

Probab=96.49  E-value=0.0013  Score=58.24  Aligned_cols=41  Identities=41%  Similarity=0.978  Sum_probs=33.1

Q ss_pred             ccCCCCCCcceEEEEeCCCccceeeCCCCCCCcee---------------cCCCCCCceeeC
Q 031276          104 LRCSFCMGTGSVTVELGGDEREFSKCINCDGVGSL---------------TCTTCQGTGIQP  150 (162)
Q Consensus       104 ~~C~~C~GtG~v~~~~~g~~~~~~~C~~C~G~G~v---------------~C~~C~G~G~v~  150 (162)
                      ..|..|+|+|...    +  ....+|+.|+|+|.+               +|+.|+|+|++.
T Consensus       153 ~~C~~C~G~G~~~----~--~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~  208 (369)
T PRK14282        153 ETCPHCGGTGVEP----G--SGYVTCPKCHGTGRIREERRSFFGVFVSERTCERCGGTGKIP  208 (369)
T ss_pred             ccCCCCCccCCCC----C--CCCcCCCCCCCcCEEEEEEEccCcceEEEEECCCCCCcceeC
Confidence            6899999999753    1  134689999999975               599999999873

>PRK14295 chaperone protein DnaJ; Provisional

Probab=96.42  E-value=0.0015  Score=58.48  Aligned_cols=41  Identities=34%  Similarity=0.888  Sum_probs=33.3

Q ss_pred             ccCCCCCCcceEEEEeCCCccceeeCCCCCCCcee-----------cCCCCCCceeeC
Q 031276          104 LRCSFCMGTGSVTVELGGDEREFSKCINCDGVGSL-----------TCTTCQGTGIQP  150 (162)
Q Consensus       104 ~~C~~C~GtG~v~~~~~g~~~~~~~C~~C~G~G~v-----------~C~~C~G~G~v~  150 (162)
                      ..|..|+|+|...    +  ....+|+.|+|+|.+           +|+.|+|+|++.
T Consensus       167 ~~C~~C~G~G~~~----~--~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~  218 (389)
T PRK14295        167 APCPACSGTGAKN----G--TTPRVCPTCSGTGQVSRNSGGFSLSEPCPDCKGRGLIA  218 (389)
T ss_pred             ccCCCCcccccCC----C--CCCcCCCCCCCEeEEEEEecceEEEEecCCCcceeEEe
Confidence            6899999999854    1  134689999999974           799999999873

>PRK14276 chaperone protein DnaJ; Provisional

Probab=96.42  E-value=0.0016  Score=58.03  Aligned_cols=42  Identities=36%  Similarity=0.809  Sum_probs=33.2

Q ss_pred             cccCCCCCCcceEEEEeCCCccceeeCCCCCCCcee---------------cCCCCCCceeeC
Q 031276          103 WLRCSFCMGTGSVTVELGGDEREFSKCINCDGVGSL---------------TCTTCQGTGIQP  150 (162)
Q Consensus       103 ~~~C~~C~GtG~v~~~~~g~~~~~~~C~~C~G~G~v---------------~C~~C~G~G~v~  150 (162)
                      ...|..|+|+|...    +  ....+|+.|+|+|.+               +|+.|+|+|.+.
T Consensus       146 ~~~C~~C~G~G~~~----~--~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~  202 (380)
T PRK14276        146 EATCHTCNGSGAKP----G--TSPVTCGKCHGSGVITVDTQTPLGMMRRQVTCDVCHGTGKEI  202 (380)
T ss_pred             cccCCCCcCcccCC----C--CCCccCCCCCCeeEEEEEEecCCceEEEEEECCCCCCCCccc
Confidence            36899999999743    1  134689999999864               699999999773

>PTZ00037 DnaJ_C chaperone protein; Provisional

Probab=96.40  E-value=0.002  Score=58.55  Aligned_cols=41  Identities=34%  Similarity=0.800  Sum_probs=33.0

Q ss_pred             ccCCCCCCcceEEEEeCCCccceeeCCCCCCCce---------------ecCCCCCCceeeCc
Q 031276          104 LRCSFCMGTGSVTVELGGDEREFSKCINCDGVGS---------------LTCTTCQGTGIQPR  151 (162)
Q Consensus       104 ~~C~~C~GtG~v~~~~~g~~~~~~~C~~C~G~G~---------------v~C~~C~G~G~v~~  151 (162)
                      ..|..|+|+|...    +   ...+|+.|+|+|.               .+|+.|+|+|.+..
T Consensus       151 ~~C~~C~G~G~~~----~---~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~i~  206 (421)
T PTZ00037        151 VICANCEGHGGPK----D---AFVDCKLCNGQGIRVQIRQMGSMIHQTQSTCNSCNGQGKIIP  206 (421)
T ss_pred             ccccccCCCCCCC----C---CCccCCCCCCCCeEEEEEeecceeeEEEEeCCCCCCcceecc
Confidence            6899999999631    2   3468999999994               27999999998754

>PRK14280 chaperone protein DnaJ; Provisional

Probab=96.38  E-value=0.0015  Score=58.09  Aligned_cols=42  Identities=36%  Similarity=0.842  Sum_probs=33.1

Q ss_pred             cccCCCCCCcceEEEEeCCCccceeeCCCCCCCcee---------------cCCCCCCceeeC
Q 031276          103 WLRCSFCMGTGSVTVELGGDEREFSKCINCDGVGSL---------------TCTTCQGTGIQP  150 (162)
Q Consensus       103 ~~~C~~C~GtG~v~~~~~g~~~~~~~C~~C~G~G~v---------------~C~~C~G~G~v~  150 (162)
                      ...|+.|+|+|...    +  ....+|+.|+|+|.+               +|+.|+|+|.+.
T Consensus       143 ~~~C~~C~G~G~~~----~--~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~  199 (376)
T PRK14280        143 EETCDTCHGSGAKP----G--TSKETCSHCGGSGQVSVEQNTPFGRVVNRQTCPHCNGTGQEI  199 (376)
T ss_pred             eccCCCCCCcccCC----C--CCCccCCCCCCEEEEEEEeecCCceEEEEEEcCCCCCCCcee
Confidence            36899999999743    1  134679999999964               699999999863

>PRK14287 chaperone protein DnaJ; Provisional

Probab=96.31  E-value=0.0016  Score=57.79  Aligned_cols=41  Identities=37%  Similarity=0.872  Sum_probs=32.8

Q ss_pred             ccCCCCCCcceEEEEeCCCccceeeCCCCCCCcee---------------cCCCCCCceeeC
Q 031276          104 LRCSFCMGTGSVTVELGGDEREFSKCINCDGVGSL---------------TCTTCQGTGIQP  150 (162)
Q Consensus       104 ~~C~~C~GtG~v~~~~~g~~~~~~~C~~C~G~G~v---------------~C~~C~G~G~v~  150 (162)
                      ..|..|+|+|...    +  ....+|+.|+|+|.+               +|+.|.|+|++.
T Consensus       139 ~~C~~C~G~G~~~----~--~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~  194 (371)
T PRK14287        139 ETCGTCHGSGAKP----G--TKPETCSHCGGSGQLNVEQNTPFGRVVNRRVCHHCEGTGKII  194 (371)
T ss_pred             ccCCCCCCcccCC----C--CCCcccCCCCCEEEEEEEEecCCceEEEEEeCCCCCCCCccc
Confidence            6899999999753    1  234679999999964               699999999873

>PRK14294 chaperone protein DnaJ; Provisional

Probab=96.25  E-value=0.0024  Score=56.58  Aligned_cols=41  Identities=32%  Similarity=0.741  Sum_probs=32.7

Q ss_pred             ccCCCCCCcceEEEEeCCCccceeeCCCCCCCcee-----------cCCCCCCceeeC
Q 031276          104 LRCSFCMGTGSVTVELGGDEREFSKCINCDGVGSL-----------TCTTCQGTGIQP  150 (162)
Q Consensus       104 ~~C~~C~GtG~v~~~~~g~~~~~~~C~~C~G~G~v-----------~C~~C~G~G~v~  150 (162)
                      ..|..|+|+|....      ....+|+.|+|.|.+           +|+.|+|+|++.
T Consensus       145 ~~C~~C~G~G~~~~------~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~  196 (366)
T PRK14294        145 ETCEECHGSGCEPG------TSPTTCPQCGGSGQVTQSQGFFSIRTTCPRCRGMGKVI  196 (366)
T ss_pred             ccCCCCCCccccCC------CCcccCCCcCCeEEEEEEeeeEEEEeeCCCCCCcCeec
Confidence            68999999998531      124679999999964           699999999873

>PRK14277 chaperone protein DnaJ; Provisional

Probab=96.25  E-value=0.0022  Score=57.27  Aligned_cols=42  Identities=31%  Similarity=0.791  Sum_probs=33.5

Q ss_pred             cccCCCCCCcceEEEEeCCCccceeeCCCCCCCcee---------------cCCCCCCceeeC
Q 031276          103 WLRCSFCMGTGSVTVELGGDEREFSKCINCDGVGSL---------------TCTTCQGTGIQP  150 (162)
Q Consensus       103 ~~~C~~C~GtG~v~~~~~g~~~~~~~C~~C~G~G~v---------------~C~~C~G~G~v~  150 (162)
                      ...|..|+|+|....      ....+|+.|+|.|.+               +|..|+|+|++.
T Consensus       155 ~~~C~~C~G~G~~~~------~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~  211 (386)
T PRK14277        155 FEKCDVCKGSGAKPG------SKPVTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRCHGEGKII  211 (386)
T ss_pred             eccCCCCCCCCcCCC------CCCccCCCCCCEEEEEEEEeccCceEEEEEECCCCCcceeec
Confidence            368999999997531      134689999999875               599999999873

>PRK14288 chaperone protein DnaJ; Provisional

Probab=96.22  E-value=0.0026  Score=56.55  Aligned_cols=40  Identities=38%  Similarity=0.846  Sum_probs=31.1

Q ss_pred             ccCCCCCCcceEEEEeCCCccceeeCCCCCCCcee-----------cCCCCCCceeeC
Q 031276          104 LRCSFCMGTGSVTVELGGDEREFSKCINCDGVGSL-----------TCTTCQGTGIQP  150 (162)
Q Consensus       104 ~~C~~C~GtG~v~~~~~g~~~~~~~C~~C~G~G~v-----------~C~~C~G~G~v~  150 (162)
                      ..|..|+|+|...    +   ...+|+.|+|.|.+           +|+.|.|+|++.
T Consensus       141 ~~C~~C~G~G~~~----~---~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~  191 (369)
T PRK14288        141 SVCESCDGTGAKD----K---ALETCKQCNGQGQVFMRQGFMSFAQTCGACQGKGKII  191 (369)
T ss_pred             ccCCCCCCcccCC----C---CCcCCCCCCCCcEEEEEeceEEEEEecCCCCCCceEc
Confidence            5899999998643    1   24679999999965           599999999763

>TIGR02642 phage_xxxx uncharacterized phage protein

Probab=96.22  E-value=0.0026  Score=52.44  Aligned_cols=13  Identities=38%  Similarity=0.933  Sum_probs=6.9

Q ss_pred             ccCCCCCCcceEE
Q 031276          104 LRCSFCMGTGSVT  116 (162)
Q Consensus       104 ~~C~~C~GtG~v~  116 (162)
                      .+|+.|+|+|++.
T Consensus       100 ~~C~~C~G~G~~i  112 (186)
T TIGR02642       100 CKCPRCRGTGLIQ  112 (186)
T ss_pred             CcCCCCCCeeEEe
Confidence            4555555555543

This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.

>PRK14289 chaperone protein DnaJ; Provisional

Probab=96.13  E-value=0.0023  Score=56.97  Aligned_cols=42  Identities=40%  Similarity=0.875  Sum_probs=33.7

Q ss_pred             cccCCCCCCcceEEEEeCCCccceeeCCCCCCCcee---------------cCCCCCCceeeC
Q 031276          103 WLRCSFCMGTGSVTVELGGDEREFSKCINCDGVGSL---------------TCTTCQGTGIQP  150 (162)
Q Consensus       103 ~~~C~~C~GtG~v~~~~~g~~~~~~~C~~C~G~G~v---------------~C~~C~G~G~v~  150 (162)
                      ...|..|+|+|....      .....|+.|+|.|.+               +|+.|.|+|++.
T Consensus       154 ~~~C~~C~G~G~~~~------~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~  210 (386)
T PRK14289        154 YVPCSHCHGTGAEGN------NGSETCPTCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGKII  210 (386)
T ss_pred             ecccCCCCCCCCCCC------CCCCcCCCCcCeEEEEEEEecccceEEEEEecCCCCcccccc
Confidence            378999999997531      235679999999886               599999999764

>PRK14291 chaperone protein DnaJ; Provisional

Probab=96.11  E-value=0.0029  Score=56.34  Aligned_cols=41  Identities=37%  Similarity=0.825  Sum_probs=32.6

Q ss_pred             cccCCCCCCcceEEEEeCCCccceeeCCCCCCCcee-----------cCCCCCCceee
Q 031276          103 WLRCSFCMGTGSVTVELGGDEREFSKCINCDGVGSL-----------TCTTCQGTGIQ  149 (162)
Q Consensus       103 ~~~C~~C~GtG~v~~~~~g~~~~~~~C~~C~G~G~v-----------~C~~C~G~G~v  149 (162)
                      ...|..|+|+|....      ....+|+.|+|.|.+           +|+.|+|+|.+
T Consensus       156 ~~~C~~C~G~G~~~~------~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~  207 (382)
T PRK14291        156 YVPCEACGGTGYDPG------SGEKVCPTCGGSGEIYQRGGFFRISQTCPTCGGEGVL  207 (382)
T ss_pred             eccCCCCccccCCCC------CCCccCCCCCCceEEEEecceEEEEecCCCCCCceEE
Confidence            368999999997531      134679999999975           79999999964

>TIGR02349 DnaJ_bact chaperone protein DnaJ

Probab=96.08  E-value=0.0029  Score=55.51  Aligned_cols=41  Identities=37%  Similarity=0.791  Sum_probs=32.8

Q ss_pred             ccCCCCCCcceEEEEeCCCccceeeCCCCCCCcee---------------cCCCCCCceeeC
Q 031276          104 LRCSFCMGTGSVTVELGGDEREFSKCINCDGVGSL---------------TCTTCQGTGIQP  150 (162)
Q Consensus       104 ~~C~~C~GtG~v~~~~~g~~~~~~~C~~C~G~G~v---------------~C~~C~G~G~v~  150 (162)
                      ..|..|+|+|....      ....+|+.|+|.|.+               +|..|.|+|++.
T Consensus       144 ~~C~~C~G~G~~~~------~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~  199 (354)
T TIGR02349       144 ESCETCHGTGAKPG------TDPKTCPTCGGTGQVRRQQGTPFGFFQQQQTCPTCGGEGKII  199 (354)
T ss_pred             CcCCCCCCCCCCCC------CCCccCCCCCCeeEEEEEEeccCCceEEEEecCCCCCcceec
Confidence            68999999997531      125679999999853               699999999874

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.

>PRK14290 chaperone protein DnaJ; Provisional

Probab=96.08  E-value=0.0037  Score=55.33  Aligned_cols=40  Identities=43%  Similarity=0.956  Sum_probs=32.4

Q ss_pred             ccCCCCCCcceEEEEeCCCccceeeCCCCCCCce---------------ecCCCCCCceeeC
Q 031276          104 LRCSFCMGTGSVTVELGGDEREFSKCINCDGVGS---------------LTCTTCQGTGIQP  150 (162)
Q Consensus       104 ~~C~~C~GtG~v~~~~~g~~~~~~~C~~C~G~G~---------------v~C~~C~G~G~v~  150 (162)
                      ..|+.|+|+|...    +   ...+|+.|+|.|.               .+|+.|.|.|++.
T Consensus       150 ~~C~~C~G~g~~~----~---~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~~  204 (365)
T PRK14290        150 AMCPDCSGTGAKN----G---KLITCPTCHGTGQQRIVRGQGFFRMVTVTTCRTCGGRGRIP  204 (365)
T ss_pred             ccCCCCccccCCC----C---CCccCCCCCCcCEEEEEeccCeEEEEEEEeCCCCCCceeEc
Confidence            6899999999643    1   2458999999995               3799999999873

>TIGR02642 phage_xxxx uncharacterized phage protein

Probab=96.04  E-value=0.0041  Score=51.28  Aligned_cols=24  Identities=46%  Similarity=0.981  Sum_probs=14.4

Q ss_pred             eeeCCCCCCCcee-----cCCCCCCceee
Q 031276          126 FSKCINCDGVGSL-----TCTTCQGTGIQ  149 (162)
Q Consensus       126 ~~~C~~C~G~G~v-----~C~~C~G~G~v  149 (162)
                      ..+|+.|+|+|++     +|+.|+|+|++
T Consensus        99 ~~~C~~C~G~G~~i~~~~~C~~C~G~G~v  127 (186)
T TIGR02642        99 SCKCPRCRGTGLIQRRQRECDTCAGTGRF  127 (186)
T ss_pred             CCcCCCCCCeeEEecCCCCCCCCCCccEE
Confidence            4456666666665     26666666655

This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.

>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs

Probab=95.97  E-value=0.012  Score=46.64  Aligned_cols=48  Identities=23%  Similarity=0.428  Sum_probs=35.3

Q ss_pred             cCccccCCCCccccCCCCCCcceEEEEeCCCccceeeCCCCCCCceecC
Q 031276           92 ARKYSAMLPLQWLRCSFCMGTGSVTVELGGDEREFSKCINCDGVGSLTC  140 (162)
Q Consensus        92 ~~C~~~C~G~G~~~C~~C~GtG~v~~~~~g~~~~~~~C~~C~G~G~v~C  140 (162)
                      ..|.. |.|...+.|..|+|+=++............+|+.|+=-|.++|
T Consensus       100 ~~C~~-Cgg~rfv~C~~C~Gs~k~~~~~~~~~~~~~rC~~Cnengl~~c  147 (147)
T cd03031         100 GVCEG-CGGARFVPCSECNGSCKVFAENATAAGGFLRCPECNENGLVRC  147 (147)
T ss_pred             CCCCC-CCCcCeEECCCCCCcceEEeccCcccccEEECCCCCccccccC
Confidence            34666 8888889999999998887543212335678888888887776

This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.

>PRK14293 chaperone protein DnaJ; Provisional

Probab=95.96  E-value=0.0053  Score=54.54  Aligned_cols=41  Identities=34%  Similarity=0.804  Sum_probs=33.3

Q ss_pred             cccCCCCCCcceEEEEeCCCccceeeCCCCCCCcee---------------cCCCCCCceee
Q 031276          103 WLRCSFCMGTGSVTVELGGDEREFSKCINCDGVGSL---------------TCTTCQGTGIQ  149 (162)
Q Consensus       103 ~~~C~~C~GtG~v~~~~~g~~~~~~~C~~C~G~G~v---------------~C~~C~G~G~v  149 (162)
                      ...|..|+|+|....      ....+|+.|+|.|.+               +|..|.|.|++
T Consensus       143 ~~~C~~C~G~G~~~~------~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~  198 (374)
T PRK14293        143 LETCETCRGSGAKPG------TGPTTCSTCGGAGQVRRATRTPFGSFTQVSECPTCNGTGQV  198 (374)
T ss_pred             cccCCCCCCcCCCCC------CCCeeCCCCCCcceEEEEEecCcceEEEEeeCCCCCcceeE
Confidence            368999999997531      134689999999974               59999999987

>PRK14283 chaperone protein DnaJ; Provisional

Probab=95.96  E-value=0.0036  Score=55.63  Aligned_cols=41  Identities=37%  Similarity=0.883  Sum_probs=33.1

Q ss_pred             cccCCCCCCcceEEEEeCCCccceeeCCCCCCCcee---------------cCCCCCCceee
Q 031276          103 WLRCSFCMGTGSVTVELGGDEREFSKCINCDGVGSL---------------TCTTCQGTGIQ  149 (162)
Q Consensus       103 ~~~C~~C~GtG~v~~~~~g~~~~~~~C~~C~G~G~v---------------~C~~C~G~G~v  149 (162)
                      ...|+.|+|+|...    +  ....+|+.|+|.|.+               +|..|+|+|++
T Consensus       146 ~~~C~~C~G~G~~~----~--~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~  201 (378)
T PRK14283        146 TKKCPVCNGSRAEP----G--SEVKTCPTCGGTGQVKQVRNTILGQMMNVTTCPDCQGEGKI  201 (378)
T ss_pred             eccCCCCCccccCC----C--CCCccCCCcCCccEEEEEEeccCceEEEEEECCCCCcccee
Confidence            36899999999643    1  134679999999885               59999999987

>PRK14281 chaperone protein DnaJ; Provisional

Probab=95.80  E-value=0.0051  Score=55.15  Aligned_cols=40  Identities=43%  Similarity=0.911  Sum_probs=32.6

Q ss_pred             ccCCCCCCcceEEEEeCCCccceeeCCCCCCCcee---------------cCCCCCCceeeC
Q 031276          104 LRCSFCMGTGSVTVELGGDEREFSKCINCDGVGSL---------------TCTTCQGTGIQP  150 (162)
Q Consensus       104 ~~C~~C~GtG~v~~~~~g~~~~~~~C~~C~G~G~v---------------~C~~C~G~G~v~  150 (162)
                      ..|..|+|+|...    +   ...+|+.|+|.|.+               +|+.|+|+|.+.
T Consensus       164 ~~C~~C~G~G~~~----~---~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~  218 (397)
T PRK14281        164 VPCKECNGTGSKT----G---ATETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVV  218 (397)
T ss_pred             ecCCCCCCcccCC----C---CCccCCCCCCCcEEEEEEecccceEEEEEecCCCcceeeee
Confidence            6899999999753    2   24689999999964               599999999873

>PRK14292 chaperone protein DnaJ; Provisional

Probab=95.64  E-value=0.0058  Score=54.07  Aligned_cols=43  Identities=28%  Similarity=0.715  Sum_probs=33.4

Q ss_pred             cccCCCCCCcceEEEEeCCCccceeeCCCCCCCcee---------------cCCCCCCceeeC
Q 031276          103 WLRCSFCMGTGSVTVELGGDEREFSKCINCDGVGSL---------------TCTTCQGTGIQP  150 (162)
Q Consensus       103 ~~~C~~C~GtG~v~~~~~g~~~~~~~C~~C~G~G~v---------------~C~~C~G~G~v~  150 (162)
                      ...|..|+|+|....     -....+|+.|+|.|.+               +|..|+|.|+..
T Consensus       139 ~~~C~~C~G~G~~~~-----~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~  196 (371)
T PRK14292        139 LTECEHCHGSRTEPG-----GKPPKTCPTCRGAGAVRAQARTIFGVVETQQPCPTCRGEGQII  196 (371)
T ss_pred             eecCCCCcccccCCC-----CCCCccCCCCCCccEEEEEEeccCceEEEeeecCCCcccceec
Confidence            368999999997421     1134679999999975               599999999874

>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length

Probab=89.58  E-value=0.17  Score=43.46  Aligned_cols=29  Identities=41%  Similarity=0.639  Sum_probs=22.8

Q ss_pred             ceeeCCCCCCCceecCCCCCCceeeCccc
Q 031276          125 EFSKCINCDGVGSLTCTTCQGTGIQPRYL  153 (162)
Q Consensus       125 ~~~~C~~C~G~G~v~C~~C~G~G~v~~~l  153 (162)
                      ...++..-.|++.++|++|+|+|++++-.
T Consensus        26 ~~~py~e~~g~~~vtCPTCqGtGrIP~eq   54 (238)
T PF07092_consen   26 SSFPYVEFTGRDSVTCPTCQGTGRIPREQ   54 (238)
T ss_pred             ccCccccccCCCCCcCCCCcCCccCCccc
Confidence            34567777888888999999999988765

The function of this family is unknown.

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=84.96  E-value=0.74  Score=46.03  Aligned_cols=39  Identities=26%  Similarity=0.570  Sum_probs=20.9

Q ss_pred             ccCCCCCCcceEEEEeCCCccceeeCCCCCCCceecCCCCCCceeeCccc
Q 031276          104 LRCSFCMGTGSVTVELGGDEREFSKCINCDGVGSLTCTTCQGTGIQPRYL  153 (162)
Q Consensus       104 ~~C~~C~GtG~v~~~~~g~~~~~~~C~~C~G~G~v~C~~C~G~G~v~~~l  153 (162)
                      -.|+.|.|.|.+.... .++..          -.++|+.|+|+.+.+..|
T Consensus       737 G~C~~C~G~G~~~~~~-~f~~~----------~~~~C~~C~G~R~~~e~l  775 (924)
T TIGR00630       737 GRCEACQGDGVIKIEM-HFLPD----------VYVPCEVCKGKRYNRETL  775 (924)
T ss_pred             CCCCCCccceEEEEEc-cCCCC----------cccCCCCcCCceeChHHH
Confidence            3577777777776543 22111          123566666666554443

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed

Probab=80.13  E-value=1.4  Score=44.18  Aligned_cols=15  Identities=40%  Similarity=1.099  Sum_probs=10.8

Q ss_pred             cCCCCCCcceEEEEe
Q 031276          105 RCSFCMGTGSVTVEL  119 (162)
Q Consensus       105 ~C~~C~GtG~v~~~~  119 (162)
                      .|+.|.|.|.+....
T Consensus       740 ~C~~C~G~G~~~~~~  754 (943)
T PRK00349        740 RCEACQGDGVIKIEM  754 (943)
T ss_pred             CCCcccccceEEEEe
Confidence            577788887777554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	162
2ctt_A	104	DNAJ homolog subfamily A member 3; ZING finger, be	99.78
1nlt_A	248	Protein YDJ1, mitochondrial protein import protein	99.61
1exk_A	79	DNAJ protein; extended beta-hairpin, CXXCXGXG, zin	99.49
3pmq_A	669	Decaheme cytochrome C MTRF; greek KEY, C type cyto	98.1
1exk_A	79	DNAJ protein; extended beta-hairpin, CXXCXGXG, zin	98.08
2ctt_A	104	DNAJ homolog subfamily A member 3; ZING finger, be	97.65
3lcz_A	53	YCZA, inhibitor of trap, regulated by T-box (Trp)	97.45
2bx9_A	53	Anti-trap, AT, tryptophan RNA-binding attenuator p	97.11
1nlt_A	248	Protein YDJ1, mitochondrial protein import protein	97.06
2bx9_A	53	Anti-trap, AT, tryptophan RNA-binding attenuator p	96.82
3lcz_A	53	YCZA, inhibitor of trap, regulated by T-box (Trp)	96.82
3agx_A	181	DNAJ homolog subfamily B member 1; chaperone; 1.85	94.09
2q2g_A	180	HSP40 protein, heat shock 40 kDa protein, putative	91.21
1c3g_A	170	Heat shock protein 40; beta sheets, short helices,	86.69

>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.78  E-value=3.4e-20  Score=135.49  Aligned_cols=89  Identities=22%  Similarity=0.412  Sum_probs=80.9

Q ss_pred             ccEEEEEEeeeeeeeecceeEEEEeecCCCcccCcccccccCccccCCCCccccCCCCCCcceEEEEeCCCccceeeCCC
Q 031276           52 NTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSFCMGTGSVTVELGGDEREFSKCIN  131 (162)
Q Consensus        52 ~T~~~i~i~~~eaa~G~~~~i~~~~~~~c~~~~~C~GsG~~~C~~~C~G~G~~~C~~C~GtG~v~~~~~g~~~~~~~C~~  131 (162)
                      +..+.|+|+|+||++|++++|.|++.+.|   ..|+|+|++      .|+...+|+.|+|+|++...+ |.|+...+|+.
T Consensus         3 ~~~~~l~vslee~~~G~~~~i~~~~~~~C---~~C~G~G~~------~g~~~~~C~~C~G~G~~~~~~-G~~~~~~~C~~   72 (104)
T 2ctt_A            3 SGSSGMELTFNQAAKGVNKEFTVNIMDTC---ERCNGKGNE------PGTKVQHCHYCGGSGMETINT-GPFVMRSTCRR   72 (104)
T ss_dssp             CCCCCCCCCCSSCCSSSCTTCCSSCCEEC---SSSSSSSSC------TTCCCEECSSSSSSCEEEEEE-TTEEEEEECSS
T ss_pred             ceEEEEEEEHHHHcCCCEEEEEeeeeeEC---CCCcCCccC------CCCCCccCCCCCCCEEEEEEe-CCEEEEEECCc
Confidence            45778899999999999999999999999   999999986      677889999999999998776 77888899999


Q ss_pred             CCCCcee---cCCCCCCceeeC
Q 031276          132 CDGVGSL---TCTTCQGTGIQP  150 (162)
Q Consensus       132 C~G~G~v---~C~~C~G~G~v~  150 (162)
                      |+|.|++   +|+.|+|.|++.
T Consensus        73 C~G~G~~i~~~C~~C~G~G~v~   94 (104)
T 2ctt_A           73 CGGRGSIIISPCVVCRGAGQAK   94 (104)
T ss_dssp             SSSSSEECSSCCSSSSSCSEEC
T ss_pred             CCCcceECCCcCCCCCCeeEEE
Confidence            9999999   899999999763

>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1

Probab=99.61  E-value=3.5e-16  Score=129.82  Aligned_cols=90  Identities=24%  Similarity=0.395  Sum_probs=77.7

Q ss_pred             cccEEEEEEeeeeeeeecceeEEEEeecCCCcccCcccccccCccccCCCCccccCCCCCCcceEEEEeC-CCc--ccee
Q 031276           51 QNTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSFCMGTGSVTVELG-GDE--REFS  127 (162)
Q Consensus        51 ~~T~~~i~i~~~eaa~G~~~~i~~~~~~~c~~~~~C~GsG~~~C~~~C~G~G~~~C~~C~GtG~v~~~~~-g~~--~~~~  127 (162)
                      +|.++.++|+|+||++|.++++.|.+.+.|   ..|+|+|++      .|+ ..+|+.|+|+|++...++ |.|  +...
T Consensus        12 ~d~~~~l~vslee~~~G~~k~i~~~r~~~C---~~C~G~G~~------~g~-~~~C~~C~G~G~~~~~~~~g~~~~~~~~   81 (248)
T 1nlt_A           12 KDIKHEISASLEELYKGRTAKLALNKQILC---KECEGRGGK------KGA-VKKCTSCNGQGIKFVTRQMGPMIQRFQT   81 (248)
T ss_dssp             CCEEEEEEECTTHHHHCEEEEEEEEEEEEC---TTTTTCSBS------TTT-CCCCTTSSSSSCEEEEEESSSEEEEEEC
T ss_pred             CCEEEEEEecHHHhcCCceEEEEeeEEEeC---CCCcCccCC------CCC-CccCCCCCCCcEEEEEEecCceEEEEEE
Confidence            466899999999999999999999999999   999999997      566 499999999999876552 433  3678


Q ss_pred             eCCCCCCCcee-----cCCCCCCceeeC
Q 031276          128 KCINCDGVGSL-----TCTTCQGTGIQP  150 (162)
Q Consensus       128 ~C~~C~G~G~v-----~C~~C~G~G~v~  150 (162)
                      +|+.|+|+|++     +|+.|+|.|++.
T Consensus        82 ~C~~C~G~G~~i~~~~~C~~C~G~g~~~  109 (248)
T 1nlt_A           82 ECDVCHGTGDIIDPKDRCKSCNGKKVEN  109 (248)
T ss_dssp             SCTTCSSSSSCCCTTSBCSSSTTSCEEE
T ss_pred             cCCCCCCcCEEeccCCCCcccCCCceEe
Confidence            99999999965     799999999763

>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1

Probab=99.49  E-value=1.2e-14  Score=100.49  Aligned_cols=74  Identities=28%  Similarity=0.479  Sum_probs=65.3

Q ss_pred             ecceeEEEEeecCCCcccCcccccccCccccCCCCccccCCCCCCcceEEEEeCCCccceeeCCCCCCCcee---cCCCC
Q 031276           67 GIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSFCMGTGSVTVELGGDEREFSKCINCDGVGSL---TCTTC  143 (162)
Q Consensus        67 G~~~~i~~~~~~~c~~~~~C~GsG~~~C~~~C~G~G~~~C~~C~GtG~v~~~~~g~~~~~~~C~~C~G~G~v---~C~~C  143 (162)
                      |++++|.|.+.+.|   +.|+|+|+.      .+....+|+.|+|+|++...+ |.|+...+|+.|+|.|++   +|+.|
T Consensus         1 G~~~~i~~~~~~~C---~~C~G~G~~------~~~~~~~C~~C~G~G~~~~~~-g~~~~~~~C~~C~G~G~~~~~~C~~C   70 (79)
T 1exk_A            1 GVTKEIRIPTLEEC---DVCHGSGAK------PGTQPQTCPTCHGSGQVQMRQ-GFFAVQQTCPHCQGRGTLIKDPCNKC   70 (79)
T ss_dssp             CTTTSCCCCCEEEC---GGGTTTSBC------SSSCCEECTTTTTSSEEEEEE-TTEEEEEECTTTTTSSEECSSBCGGG
T ss_pred             CcEEEEEcccceEC---CCCcccccC------CCccCCCCCCCcCeEEEEEEc-CCCEEeeECcCCCCccEECCCcCCCC
Confidence            67788999999999   999999986      566668999999999988765 777778899999999999   89999


Q ss_pred             CCceeeC
Q 031276          144 QGTGIQP  150 (162)
Q Consensus       144 ~G~G~v~  150 (162)
                      +|.|++.
T Consensus        71 ~G~G~~~   77 (79)
T 1exk_A           71 HGHGRVE   77 (79)
T ss_dssp             TTSSEEE
T ss_pred             CCeEEEe
Confidence            9999874

>3pmq_A Decaheme cytochrome C MTRF; greek KEY, C type cytochrome, outer membrane, electron trans; HET: HEC; 3.20A {Shewanella oneidensis}

Probab=98.10  E-value=3.1e-08  Score=92.82  Aligned_cols=85  Identities=12%  Similarity=0.056  Sum_probs=64.6

Q ss_pred             EEEEEEeeeeeeeecceeEEEEeecCCCcccCcccccccCccccCCCC---ccccCCCCCCcceEEEEe-----------
Q 031276           54 VVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPL---QWLRCSFCMGTGSVTVEL-----------  119 (162)
Q Consensus        54 ~~~i~i~~~eaa~G~~~~i~~~~~~~c~~~~~C~GsG~~~C~~~C~G~---G~~~C~~C~GtG~v~~~~-----------  119 (162)
                      .+.++|+|+||++|+++++.+.+.+.|   ..|+|+|++      +|.   ...+|+.|||+.......           
T Consensus       168 ~~~l~i~feeA~~G~~k~i~v~~~~~C---~tCHGsGA~------~Gt~~~~~~tC~tCHGs~~~~~~~~~~~~~iH~iH  238 (669)
T 3pmq_A          168 ITNQHYDWQSSGNMLAYTRNLVSIDTC---NSCHSNLAF------HGGRYNQVETCVTCHNSKKVSNAADIFPQMIHSKH  238 (669)
T ss_dssp             SCCCEEEEECSSSSCCCCCCCCCSHHH---HHHHSSCCT------TTTTSCSSSCSTTTSSTTTCCCSSCSHHHHHHHHT
T ss_pred             eEEEEEEhHHhhCCCceEEEeccCCcC---CCCCCCCCc------CCccCcCCccCCCCCCCcccCCccccccceeeeee
Confidence            478899999999999999999999999   999999996      776   688999999994221110           


Q ss_pred             CC-CccceeeCCCCCCCce--------------ecCCCCCCce
Q 031276          120 GG-DEREFSKCINCDGVGS--------------LTCTTCQGTG  147 (162)
Q Consensus       120 ~g-~~~~~~~C~~C~G~G~--------------v~C~~C~G~G  147 (162)
                      .| +.+....|..|+..+.              ..|..|+...
T Consensus       239 ~G~fP~~~~~C~~CH~~~~~la~~~~w~~~ps~~aC~sCH~~~  281 (669)
T 3pmq_A          239 LTGFPQSISNCQTCHADNPDLADRQNWYRVPTMEACGACHTQI  281 (669)
T ss_dssp             TSSCSSCTTCCTTTSCCCTTCCSCSCTTTCCCHHHHHHHCCSC
T ss_pred             ccCCCCccCcchhhcCCccccccccccccCCchhhhhhccCCc
Confidence            01 1123457888888875              1588887543

>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1

Probab=98.08  E-value=1.3e-06  Score=59.74  Aligned_cols=42  Identities=33%  Similarity=0.812  Sum_probs=34.4

Q ss_pred             cccCCCCCCcceEEEEeCCCccceeeCCCCCCCcee-----------cCCCCCCceeeC
Q 031276          103 WLRCSFCMGTGSVTVELGGDEREFSKCINCDGVGSL-----------TCTTCQGTGIQP  150 (162)
Q Consensus       103 ~~~C~~C~GtG~v~~~~~g~~~~~~~C~~C~G~G~v-----------~C~~C~G~G~v~  150 (162)
                      ...|+.|+|+|...      .....+|+.|+|+|++           +|+.|+|.|++.
T Consensus        11 ~~~C~~C~G~G~~~------~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~   63 (79)
T 1exk_A           11 LEECDVCHGSGAKP------GTQPQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTLI   63 (79)
T ss_dssp             EEECGGGTTTSBCS------SSCCEECTTTTTSSEEEEEETTEEEEEECTTTTTSSEEC
T ss_pred             ceECCCCcccccCC------CccCCCCCCCcCeEEEEEEcCCCEEeeECcCCCCccEEC
Confidence            47999999999753      1235689999999975           799999999874

>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.65  E-value=2.1e-05  Score=56.74  Aligned_cols=42  Identities=33%  Similarity=0.729  Sum_probs=33.8

Q ss_pred             cccCCCCCCcceEEEEeCCCccceeeCCCCCCCcee-----------cCCCCCCceeeC
Q 031276          103 WLRCSFCMGTGSVTVELGGDEREFSKCINCDGVGSL-----------TCTTCQGTGIQP  150 (162)
Q Consensus       103 ~~~C~~C~GtG~v~~~~~g~~~~~~~C~~C~G~G~v-----------~C~~C~G~G~v~  150 (162)
                      ...|+.|+|+|...    +  ....+|+.|+|+|++           +|+.|+|.|.+.
T Consensus        28 ~~~C~~C~G~G~~~----g--~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i   80 (104)
T 2ctt_A           28 MDTCERCNGKGNEP----G--TKVQHCHYCGGSGMETINTGPFVMRSTCRRCGGRGSII   80 (104)
T ss_dssp             CEECSSSSSSSSCT----T--CCCEECSSSSSSCEEEEEETTEEEEEECSSSSSSSEEC
T ss_pred             eeECCCCcCCccCC----C--CCCccCCCCCCCEEEEEEeCCEEEEEECCcCCCcceEC
Confidence            47899999998642    2  235789999999965           799999999874

>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A

Probab=97.45  E-value=6.3e-05  Score=49.36  Aligned_cols=26  Identities=35%  Similarity=0.825  Sum_probs=19.5

Q ss_pred             ceeeCCCCCCCcee---cCCCCCCceeeC
Q 031276          125 EFSKCINCDGVGSL---TCTTCQGTGIQP  150 (162)
Q Consensus       125 ~~~~C~~C~G~G~v---~C~~C~G~G~v~  150 (162)
                      ...+|+.|+|+|++   +|+.|+|.|++.
T Consensus         8 ~~~~C~~C~GsG~~i~~~C~~C~G~G~v~   36 (53)
T 3lcz_A            8 LETTCPNCNGSGREEPEPCPKCLGKGVIL   36 (53)
T ss_dssp             HEEECTTTTTSCEETTEECTTTTTSSEEE
T ss_pred             eeccCcCCcccccCCCCcCCCCCCcEEEE
Confidence            35678888888876   788888888764

>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*

Probab=97.11  E-value=0.00027  Score=46.30  Aligned_cols=24  Identities=29%  Similarity=0.935  Sum_probs=12.4

Q ss_pred             eeCCCCCCCcee---cCCCCCCceeeC
Q 031276          127 SKCINCDGVGSL---TCTTCQGTGIQP  150 (162)
Q Consensus       127 ~~C~~C~G~G~v---~C~~C~G~G~v~  150 (162)
                      .+|+.|+|+|++   +|+.|+|.|++.
T Consensus        10 ~~C~~C~GsG~~~~~~C~~C~G~G~v~   36 (53)
T 2bx9_A           10 VACPKCERAGEIEGTPCPACSGKGVIL   36 (53)
T ss_dssp             EECTTTTTSSEETTEECTTTTTSSEEE
T ss_pred             ccCCCCcceeccCCCCCccCCCCccEE
Confidence            344444444444   566666666543

>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1

Probab=97.06  E-value=0.00014  Score=59.95  Aligned_cols=40  Identities=38%  Similarity=0.867  Sum_probs=29.9

Q ss_pred             ccCCCCCCcceEEEEeCCCccceeeCCCCCCCcee---------------cCCCCCCceeeC
Q 031276          104 LRCSFCMGTGSVTVELGGDEREFSKCINCDGVGSL---------------TCTTCQGTGIQP  150 (162)
Q Consensus       104 ~~C~~C~GtG~v~~~~~g~~~~~~~C~~C~G~G~v---------------~C~~C~G~G~v~  150 (162)
                      ..|+.|+|+|...    +.   ..+|+.|+|+|.+               +|+.|+|+|.+.
T Consensus        39 ~~C~~C~G~G~~~----g~---~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~i   93 (248)
T 1nlt_A           39 ILCKECEGRGGKK----GA---VKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDII   93 (248)
T ss_dssp             EECTTTTTCSBST----TT---CCCCTTSSSSSCEEEEEESSSEEEEEECSCTTCSSSSSCC
T ss_pred             EeCCCCcCccCCC----CC---CccCCCCCCCcEEEEEEecCceEEEEEEcCCCCCCcCEEe
Confidence            5789999888642    22   3689999998852               699999998665

>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*

Probab=96.82  E-value=0.00069  Score=44.34  Aligned_cols=26  Identities=27%  Similarity=0.747  Sum_probs=14.0

Q ss_pred             ccCCCCCCcceEEEEeCCCccceeeCCCCCCCcee
Q 031276          104 LRCSFCMGTGSVTVELGGDEREFSKCINCDGVGSL  138 (162)
Q Consensus       104 ~~C~~C~GtG~v~~~~~g~~~~~~~C~~C~G~G~v  138 (162)
                      .+|+.|+|+|.+.         ..+|+.|+|.|++
T Consensus        10 ~~C~~C~GsG~~~---------~~~C~~C~G~G~v   35 (53)
T 2bx9_A           10 VACPKCERAGEIE---------GTPCPACSGKGVI   35 (53)
T ss_dssp             EECTTTTTSSEET---------TEECTTTTTSSEE
T ss_pred             ccCCCCcceeccC---------CCCCccCCCCccE
Confidence            3555666655542         1356666666554

>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A

Probab=96.82  E-value=0.00069  Score=44.33  Aligned_cols=26  Identities=31%  Similarity=0.710  Sum_probs=15.8

Q ss_pred             ccCCCCCCcceEEEEeCCCccceeeCCCCCCCcee
Q 031276          104 LRCSFCMGTGSVTVELGGDEREFSKCINCDGVGSL  138 (162)
Q Consensus       104 ~~C~~C~GtG~v~~~~~g~~~~~~~C~~C~G~G~v  138 (162)
                      .+|+.|+|+|.+.         ..+|+.|+|.|.+
T Consensus        10 ~~C~~C~GsG~~i---------~~~C~~C~G~G~v   35 (53)
T 3lcz_A           10 TTCPNCNGSGREE---------PEPCPKCLGKGVI   35 (53)
T ss_dssp             EECTTTTTSCEET---------TEECTTTTTSSEE
T ss_pred             ccCcCCcccccCC---------CCcCCCCCCcEEE
Confidence            4666666666653         1456666666665

>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A

Probab=94.09  E-value=0.011  Score=46.30  Aligned_cols=26  Identities=12%  Similarity=0.070  Sum_probs=20.7

Q ss_pred             cccEEEEEEeeeeeeeecceeEEEEe
Q 031276           51 QNTVVAISVGLVSVAVGIGIPIFYET   76 (162)
Q Consensus        51 ~~T~~~i~i~~~eaa~G~~~~i~~~~   76 (162)
                      ++.++.+.|+|+||++|.++++.+.+
T Consensus         3 ~d~~~~l~islee~~~G~~k~i~i~~   28 (181)
T 3agx_A            3 PPVTHDLRVSLEEIYSGCTKKMKISH   28 (181)
T ss_dssp             ---CEEEEECHHHHHHCEEEEEEEEE
T ss_pred             CCEEEEEEEEHHHhcCCcEEEEEEec
Confidence            46688999999999999999997654

>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II}

Probab=91.21  E-value=0.048  Score=42.55  Aligned_cols=30  Identities=17%  Similarity=0.030  Sum_probs=27.3

Q ss_pred             cccEEEEEEeeeeeeeecceeEEEEeecCC
Q 031276           51 QNTVVAISVGLVSVAVGIGIPIFYETQIDN   80 (162)
Q Consensus        51 ~~T~~~i~i~~~eaa~G~~~~i~~~~~~~c   80 (162)
                      ++.++.++|+|+||++|.++++.+.+.+.|
T Consensus         4 ~d~~~~l~islee~~~G~~k~i~~~~~~~c   33 (180)
T 2q2g_A            4 RSHEVPLLVTLEELYLGKRKKIKVTRKRFI   33 (180)
T ss_dssp             CEEEEEEEECHHHHHHCEEEEEEEEEEEEE
T ss_pred             CCEEEEEEeeHHHhcCCcEEEEEEeEEEec
Confidence            467899999999999999999999998876

>1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB: 2b26_A

Probab=86.69  E-value=0.18  Score=38.93  Aligned_cols=26  Identities=19%  Similarity=0.179  Sum_probs=23.4

Q ss_pred             ccEEEEEEeeeeeeeecceeEEEEee
Q 031276           52 NTVVAISVGLVSVAVGIGIPIFYETQ   77 (162)
Q Consensus        52 ~T~~~i~i~~~eaa~G~~~~i~~~~~   77 (162)
                      |.++.++|+|+||++|.++++.+.+.
T Consensus         2 d~~~~l~islee~~~G~~k~i~~~~~   27 (170)
T 1c3g_A            2 TVQVNLPVSLEDLFVGKKKSFKIGRK   27 (170)
T ss_dssp             EEEEEEEECHHHHHHTCEEEEEEEEE
T ss_pred             CEEEEEEeEHHHhhCCcEEEEEEEEe
Confidence            56889999999999999999999865

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	162
d1exka_	79	Cysteine-rich domain of the chaperone protein DnaJ	99.6
d1nlta3	74	Mitochondrial protein import protein mas5 (Hsp40,	99.24
d1exka_	79	Cysteine-rich domain of the chaperone protein DnaJ	97.77
d1nlta3	74	Mitochondrial protein import protein mas5 (Hsp40,	97.61
d1m1qa_	90	Flavocytochrome c3 (respiratory fumarate reductase	96.89
d1nlta1	74	Mitochondrial protein import protein mas5 (Hsp40,	89.23
d1c3ga1	80	Heat shock protein 40 Sis1 {Baker's yeast (Sacchar	84.12

>d1exka_ g.54.1.1 (A:) Cysteine-rich domain of the chaperone protein DnaJ {Escherichia coli [TaxId: 562]}

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Cysteine-rich domain of the chaperone protein DnaJ
species: Escherichia coli [TaxId: 562]

Probab=99.60  E-value=1.6e-16  Score=109.98  Aligned_cols=74  Identities=28%  Similarity=0.479  Sum_probs=66.9

Q ss_pred             ecceeEEEEeecCCCcccCcccccccCccccCCCCccccCCCCCCcceEEEEeCCCccceeeCCCCCCCcee---cCCCC
Q 031276           67 GIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSFCMGTGSVTVELGGDEREFSKCINCDGVGSL---TCTTC  143 (162)
Q Consensus        67 G~~~~i~~~~~~~c~~~~~C~GsG~~~C~~~C~G~G~~~C~~C~GtG~v~~~~~g~~~~~~~C~~C~G~G~v---~C~~C  143 (162)
                      |++++|.|++++.|   +.|+|+|++      .+..+.+|+.|+|+|++.... +.++...+|+.|+|+|++   +|+.|
T Consensus         1 G~~k~i~i~~~~~C---~~C~G~G~~------~g~~~~~C~~C~G~G~v~~~~-g~~~~~~~C~~C~G~G~~i~~~C~~C   70 (79)
T d1exka_           1 GVTKEIRIPTLEEC---DVCHGSGAK------PGTQPQTCPTCHGSGQVQMRQ-GFFAVQQTCPHCQGRGTLIKDPCNKC   70 (79)
T ss_dssp             CTTTSCCCCCEEEC---GGGTTTSBC------SSSCCEECTTTTTSSEEEEEE-TTEEEEEECTTTTTSSEECSSBCGGG
T ss_pred             CceEEEEeeeeccC---CCCcCcccC------CCccceeCCCccceeEEEEec-ccceeeEECcccCcceeECCCCCCCC
Confidence            68899999999999   999999986      677889999999999987665 777788899999999998   89999


Q ss_pred             CCceeeC
Q 031276          144 QGTGIQP  150 (162)
Q Consensus       144 ~G~G~v~  150 (162)
                      +|+|++.
T Consensus        71 ~G~G~v~   77 (79)
T d1exka_          71 HGHGRVE   77 (79)
T ss_dssp             TTSSEEE
T ss_pred             CCceEee
Confidence            9999875

>d1nlta3 g.54.1.1 (A:139-212) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.24  E-value=3e-12  Score=87.26  Aligned_cols=64  Identities=28%  Similarity=0.524  Sum_probs=51.3

Q ss_pred             ecCCCcccCcccccccCccccCCCCccccCCCCCCcceEEEEeC-CC--ccceeeCCCCCCCcee-----cCCCCCCcee
Q 031276           77 QIDNAYDFPIFGAGQARKYSAMLPLQWLRCSFCMGTGSVTVELG-GD--EREFSKCINCDGVGSL-----TCTTCQGTGI  148 (162)
Q Consensus        77 ~~~c~~~~~C~GsG~~~C~~~C~G~G~~~C~~C~GtG~v~~~~~-g~--~~~~~~C~~C~G~G~v-----~C~~C~G~G~  148 (162)
                      .+.|   ..|+|+|++      .++ ..+|+.|+|+|++..... +.  ++...+|+.|+|.|++     +|+.|+|+|+
T Consensus         2 ~v~C---~~C~G~G~~------~~~-~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~i~~~~~C~~C~G~g~   71 (74)
T d1nlta3           2 QILC---KECEGRGGK------KGA-VKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDIIDPKDRCKSCNGKKV   71 (74)
T ss_dssp             EEEC---TTTTTCSBS------TTT-CCCCTTSSSSSCEEEEEESSSEEEEEECSCTTCSSSSSCCCTTSBCSSSTTSCE
T ss_pred             ccCC---cCCcccccC------CCC-CCCCCCCcceeeeeEEEEecCcEEEEEEECccCccceEEeCCCCCCCCCCCeeE
Confidence            4566   999999986      443 578999999999887652 32  3456789999999987     6999999997


Q ss_pred             eC
Q 031276          149 QP  150 (162)
Q Consensus       149 v~  150 (162)
                      +.
T Consensus        72 v~   73 (74)
T d1nlta3          72 EN   73 (74)
T ss_dssp             EE
T ss_pred             eC
Confidence            74

>d1exka_ g.54.1.1 (A:) Cysteine-rich domain of the chaperone protein DnaJ {Escherichia coli [TaxId: 562]}

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Cysteine-rich domain of the chaperone protein DnaJ
species: Escherichia coli [TaxId: 562]

Probab=97.77  E-value=4.1e-06  Score=56.56  Aligned_cols=42  Identities=36%  Similarity=0.870  Sum_probs=34.1

Q ss_pred             cccCCCCCCcceEEEEeCCCccceeeCCCCCCCcee-----------cCCCCCCceeeC
Q 031276          103 WLRCSFCMGTGSVTVELGGDEREFSKCINCDGVGSL-----------TCTTCQGTGIQP  150 (162)
Q Consensus       103 ~~~C~~C~GtG~v~~~~~g~~~~~~~C~~C~G~G~v-----------~C~~C~G~G~v~  150 (162)
                      ...|+.|+|+|...    +  ....+|+.|+|.|++           +|+.|+|+|++.
T Consensus        11 ~~~C~~C~G~G~~~----g--~~~~~C~~C~G~G~v~~~~g~~~~~~~C~~C~G~G~~i   63 (79)
T d1exka_          11 LEECDVCHGSGAKP----G--TQPQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTLI   63 (79)
T ss_dssp             EEECGGGTTTSBCS----S--SCCEECTTTTTSSEEEEEETTEEEEEECTTTTTSSEEC
T ss_pred             eccCCCCcCcccCC----C--ccceeCCCccceeEEEEecccceeeEECcccCcceeEC
Confidence            47899999999642    1  135689999999987           699999999874

>d1nlta3 g.54.1.1 (A:139-212) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.61  E-value=6.8e-06  Score=54.95  Aligned_cols=40  Identities=38%  Similarity=0.870  Sum_probs=32.0

Q ss_pred             ccCCCCCCcceEEEEeCCCccceeeCCCCCCCcee---------------cCCCCCCceeeC
Q 031276          104 LRCSFCMGTGSVTVELGGDEREFSKCINCDGVGSL---------------TCTTCQGTGIQP  150 (162)
Q Consensus       104 ~~C~~C~GtG~v~~~~~g~~~~~~~C~~C~G~G~v---------------~C~~C~G~G~v~  150 (162)
                      +.|+.|+|+|...    +   ...+|+.|+|+|.+               +|+.|+|+|++.
T Consensus         3 v~C~~C~G~G~~~----~---~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~i   57 (74)
T d1nlta3           3 ILCKECEGRGGKK----G---AVKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDII   57 (74)
T ss_dssp             EECTTTTTCSBST----T---TCCCCTTSSSSSCEEEEEESSSEEEEEECSCTTCSSSSSCC
T ss_pred             cCCcCCcccccCC----C---CCCCCCCCcceeeeeEEEEecCcEEEEEEECccCccceEEe
Confidence            6899999999642    2   23579999999964               699999999653

>d1m1qa_ a.138.1.3 (A:) Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain {Shewanella oneidensis [TaxId: 70863]}

class: All alpha proteins
fold: Multiheme cytochromes
superfamily: Multiheme cytochromes
family: Di-heme elbow motif
domain: Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain
species: Shewanella oneidensis [TaxId: 70863]

Probab=96.89  E-value=1.6e-05  Score=53.68  Aligned_cols=62  Identities=16%  Similarity=0.285  Sum_probs=44.1

Q ss_pred             ccCcccccccCccccCCCC---ccccCCCCCCcceEEEEeC---CCccceeeCCCCCCCcee---cCCCCCCceeeC
Q 031276           83 DFPIFGAGQARKYSAMLPL---QWLRCSFCMGTGSVTVELG---GDEREFSKCINCDGVGSL---TCTTCQGTGIQP  150 (162)
Q Consensus        83 ~~~C~GsG~~~C~~~C~G~---G~~~C~~C~GtG~v~~~~~---g~~~~~~~C~~C~G~G~v---~C~~C~G~G~v~  150 (162)
                      |..|+|.|..      ...   ....|..|||+|.......   +.+..-..|..|+|.|..   .|.+|++.|+.+
T Consensus        14 C~~CH~~~~~------~~~~~~~~~~C~~CHg~~~~~~~~~~~h~~~~~c~~CH~~H~~~~~~~~~C~~CH~~gr~~   84 (90)
T d1m1qa_          14 CESCHKDGTP------SADGAFEFAQCQSCHGKLSEMDAVHKPHDGNLVCADCHAVHDMNVGQKPTCESCHDDGRTS   84 (90)
T ss_dssp             GGGTSGGGCC------CSSSHHHHHHHHHHHCCGGGSCTTTGGGTTTCCGGGTCCTTTSBTTCCCCSTTTCSSCCCH
T ss_pred             CCCcCCCCcc------ccCCCCCCCcCcccCCCceeEeeccccccCccccccCccccCCCCcCCCccccccCCCccc
Confidence            4889888863      222   2357999999997654332   223355789999999876   799999999764

>d1nlta1 b.4.1.1 (A:110-138,A:213-257) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.23  E-value=0.06  Score=34.71  Aligned_cols=29  Identities=17%  Similarity=0.125  Sum_probs=24.5

Q ss_pred             cccEEEEEEeeeeeeeecceeEEEEeecC
Q 031276           51 QNTVVAISVGLVSVAVGIGIPIFYETQID   79 (162)
Q Consensus        51 ~~T~~~i~i~~~eaa~G~~~~i~~~~~~~   79 (162)
                      +|-.+.+.|+|+||+.|.++++.+.+...
T Consensus         5 ~di~~~l~isleea~~G~~~~~~~~~~~~   33 (74)
T d1nlta1           5 KDIKHEISASLEELYKGRTAKLALNRKIL   33 (74)
T ss_dssp             CCEEEEEEECTTHHHHCEEEEEEEEEEEE
T ss_pred             CCEEEEEEecHHHHHhhcccceeecCccE
Confidence            35688999999999999999999876543

>d1c3ga1 b.4.1.1 (A:180-259) Heat shock protein 40 Sis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Heat shock protein 40 Sis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.12  E-value=0.14  Score=33.17  Aligned_cols=25  Identities=20%  Similarity=0.179  Sum_probs=22.0

Q ss_pred             cEEEEEEeeeeeeeecceeEEEEee
Q 031276           53 TVVAISVGLVSVAVGIGIPIFYETQ   77 (162)
Q Consensus        53 T~~~i~i~~~eaa~G~~~~i~~~~~   77 (162)
                      =.+.+.|+|+|++.|..+++.+.+.
T Consensus         3 v~~~l~vtLee~~~G~~k~i~~~r~   27 (80)
T d1c3ga1           3 VQVNLPVSLEDLFVGKKKSFKIGRK   27 (80)
T ss_dssp             EEEEEEECHHHHHHTCEEEEEEEEE
T ss_pred             EEEEeEEEHHHHhCCCceEeeccee
Confidence            3688999999999999999988765