Citrus Sinensis ID: 031293

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160--
Protein Sequence
MLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARFAKV
Secondary Structure (PSIPRED)
cHHHHHccccEEEcccccccccccEEEEEcccEEEEEccccccccccHHHHHHHHHHHHHHHHcccccccEEEEEEccccccHHHHHHHHHHHHccccEEEEEEccccccHHHHHHHHHHHHHHHHHcccccccEEEEEccccccHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cHHHHHcHHHHccccccccccEEEEEEEEccccEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHcEEEEEEEccccccHHHHHHHHHHHHccccEEEEEEccccccccHHHHHHHHHHHHHHHccccccEEEEEEccccccHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
MLNALTRqwgvvrtsdkpgltqtINFFKLGTKlclvdlpgygfaYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIdtkwgvkprdHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKAnnslvqpvmmvssksgagiRSLRTVLSKIARFAKV
Flexible Loop (DISEMBL)
mlnaltrqwgvvrtsdkpgltqTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYvstrvslkrvcllidtkwgvkprdhELISlmersqtkyQVVLTKTDTVFPIDVARRAMQIEESlkannslvqpvmmvssksgagirslRTVLSKIARFAKV
Low Complexity Region (SEG)
MLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARFAKV
Disordered region (IsUnstruct)
******RQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIE*****************************VL*********
Disordered Region (DISOPRED)
MLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARFAKV
Disordered Region (DISEMBL)
MLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARFAKV
Disordered Region (DISPRO)
MLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARFAK*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARFAKV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	162	2.2.26 [Sep-21-2011]
Q1GJX8	216	Probable GTP-binding prot	yes	no	0.962	0.722	0.416	2e-30
Q3IYY4	217	Probable GTP-binding prot	yes	no	0.969	0.723	0.401	3e-29
Q5LW13	217	Probable GTP-binding prot	yes	no	0.962	0.718	0.397	7e-29
Q5FPX9	227	Probable GTP-binding prot	yes	no	0.962	0.687	0.391	8e-28
Q16AA3	216	Probable GTP-binding prot	yes	no	0.962	0.722	0.397	1e-27
C3MF47	217	Probable GTP-binding prot	yes	no	0.975	0.728	0.386	3e-27
Q92SF6	217	Probable GTP-binding prot	yes	no	0.944	0.705	0.382	8e-27
Q89BP9	217	Probable GTP-binding prot	yes	no	0.962	0.718	0.392	1e-26
A6U5K8	217	Probable GTP-binding prot	yes	no	0.944	0.705	0.376	2e-26
Q98D85	212	Probable GTP-binding prot	yes	no	0.944	0.721	0.388	3e-26

>sp|Q1GJX8|ENGB_RUEST Probable GTP-binding protein EngB OS=Ruegeria sp. (strain TM1040) GN=engB PE=3 SV=1

 Score =  131 bits (330), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 65/156 (41%), Positives = 102/156 (65%)

Query: 1   MLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 60
           ++NALT   G+ R S+ PG TQ INFF  G +L LVDLPGYG+A A   V + W+ L+K+
Sbjct: 60  LINALTGTKGLARASNTPGRTQEINFFTQGPELYLVDLPGYGYANAPLAVVEKWQRLLKQ 119

Query: 61  YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQ 120
           Y+S R +L+R  +LIDT+ GVK  D E++ L++ S   +QVV+TK D V   D A+   Q
Sbjct: 120 YLSGRQTLRRAFVLIDTRHGVKKVDEEIMKLLDTSAVTFQVVMTKADKVKEKDRAKILDQ 179

Query: 121 IEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKI 156
           + ++L  + +    +++ SS+ G GI +LR++++ +
Sbjct: 180 VRDALSKHPAAYPEIVLTSSEKGDGIATLRSIIAHL 215

Necessary for normal cell division and for the maintenance of normal septation.
Silicibacter sp. (strain TM1040) (taxid: 292414)

>sp|Q3IYY4|ENGB_RHOS4 Probable GTP-binding protein EngB OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=engB PE=3 SV=1

 Score =  127 bits (319), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 63/157 (40%), Positives = 100/157 (63%)

Query: 1   MLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 60
           ++NALT +  + R S+ PG TQ IN+F LG    LVDLPGYG+A A + +   W+ L+K 
Sbjct: 61  LINALTGRKALARASNTPGRTQEINYFALGPSRYLVDLPGYGYAEAPKPIVQRWQRLLKG 120

Query: 61  YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQ 120
           Y++ R +L+R  +LIDT+ GVK  D E+++L++RS   +QVV+TK D V   +      Q
Sbjct: 121 YLAGRQTLRRAFVLIDTRHGVKSVDEEILTLLDRSAVTFQVVMTKADKVSQAEREAVLDQ 180

Query: 121 IEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 157
           +  +LK + +    ++M SS+ G GI +LRT+++ + 
Sbjct: 181 VRGALKKHPAAYPELVMTSSEKGMGIETLRTIVATLG 217

Necessary for normal cell division and for the maintenance of normal septation.

Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) (taxid: 272943)

>sp|Q5LW13|ENGB_RUEPO Probable GTP-binding protein EngB OS=Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) GN=engB PE=3 SV=1

 Score =  126 bits (316), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 62/156 (39%), Positives = 100/156 (64%)

Query: 1   MLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 60
           ++NALT   G+ R S+ PG TQ INFF  G +L LVDLPGYG+A A  +V + W++L+K+
Sbjct: 61  LINALTGTKGLARASNTPGRTQEINFFTQGPELYLVDLPGYGYANAPLKVVEKWQKLLKQ 120

Query: 61  YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQ 120
           Y+S R +L+R  +LID + GVK  D E++ L++ S   +Q VLTK D V   +  +   Q
Sbjct: 121 YLSGRQTLRRAFVLIDARHGVKAVDDEIMKLLDTSAVTFQCVLTKADKVKAAERDKVLAQ 180

Query: 121 IEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKI 156
           +  +L  + +    +++ SS+ G GI +LR++++ +
Sbjct: 181 VRAALAKHPAAYPEIVLTSSEKGDGIATLRSIIAHL 216

Necessary for normal cell division and for the maintenance of normal septation.

Silicibacter pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) (taxid: 246200)

>sp|Q5FPX9|ENGB_GLUOX Probable GTP-binding protein EngB OS=Gluconobacter oxydans (strain 621H) GN=engB PE=3 SV=1

 Score =  122 bits (307), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 63/161 (39%), Positives = 105/161 (65%), Gaps = 5/161 (3%)

Query: 1   MLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 60
           ++NALT +  + R S +PG T+ +NFF L  +L LVD+PGYGFA A + VK+ W++++  
Sbjct: 58  IINALTGRRALARASSEPGRTKQLNFFNLADRLSLVDMPGYGFAKAAKSVKEDWQDMMFA 117

Query: 61  YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQ 120
           Y+  R +L+RV LL+D +  +K  D +++ L++R+   +Q+VLTK D V P  +A +  +
Sbjct: 118 YLRGRTTLERVILLLDARIELKASDKDVMELLDRAAVVFQIVLTKCDQVKPKALAAKIAE 177

Query: 121 IEESLKANNSLVQP-VMMVSSKSGAGIRSLRTVLSKIARFA 160
           + E+L   ++   P ++  SS++G GI  LR   ++IARFA
Sbjct: 178 V-EALALKHAAAYPRIIATSSETGFGIEDLR---AEIARFA 214

Necessary for normal cell division and for the maintenance of normal septation.

Gluconobacter oxydans (strain 621H) (taxid: 290633)

>sp|Q16AA3|ENGB_ROSDO Probable GTP-binding protein EngB OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=engB PE=3 SV=1

 Score =  122 bits (305), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 62/156 (39%), Positives = 99/156 (63%)

Query: 1   MLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 60
           ++NALT + G+ R S+ PG TQ INFF  G    LVDLPGYG+A A   V + W+ L+K+
Sbjct: 60  LINALTGRKGLARASNTPGRTQEINFFTAGESHYLVDLPGYGYANAPVPVVEKWQRLLKQ 119

Query: 61  YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQ 120
           Y+S R +L+R  +LID + GVK  D E++SL++ +   +QVVLTK D V   +  +   Q
Sbjct: 120 YLSGRQTLRRAFVLIDARHGVKKVDEEILSLLDSAAVTFQVVLTKADKVKEKEREKVLDQ 179

Query: 121 IEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKI 156
           +  +L  + +    +++ SS+ G GI +LR++++ +
Sbjct: 180 VRTALSKHPAAFPELVITSSEKGWGIPTLRSIITDL 215

Necessary for normal cell division and for the maintenance of normal septation.

Roseobacter denitrificans (strain ATCC 33942 / OCh 114) (taxid: 375451)

>sp|C3MF47|ENGB_RHISN Probable GTP-binding protein EngB OS=Rhizobium sp. (strain NGR234) GN=engB PE=3 SV=1

 Score =  120 bits (302), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 65/168 (38%), Positives = 99/168 (58%), Gaps = 10/168 (5%)

Query: 1   MLNALTRQWGVVRTSDKPGLTQTINFFKLG---------TKLCLVDLPGYGFAYAKEEVK 51
           ++NAL    G+ RTS+ PG TQ +N+F              + LVD+PGYG+A A +E  
Sbjct: 50  LINALVGHKGLARTSNTPGRTQELNYFVPDGYSGEADDLPPMALVDMPGYGYAQAPKEQV 109

Query: 52  DAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP 111
           DAW +LV +Y+  R +LKRV +LID + G+K  D E+++L++++   YQ+VLTKTD +  
Sbjct: 110 DAWTKLVFDYLRGRSTLKRVYVLIDARHGIKKNDEEVLALLDKAAVSYQIVLTKTDKIKA 169

Query: 112 IDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLR-TVLSKIAR 158
             V R   +  + +K   +    V+  SS+ GAGI  LR T+   +AR
Sbjct: 170 AGVPRLIAETLDKIKKRPAAYPEVLSTSSEKGAGIEDLRITIEQAVAR 217

Necessary for normal cell division and for the maintenance of normal septation.

Rhizobium sp. (strain NGR234) (taxid: 394)

>sp|Q92SF6|ENGB_RHIME Probable GTP-binding protein EngB OS=Rhizobium meliloti (strain 1021) GN=engB PE=3 SV=1

 Score =  119 bits (298), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 62/162 (38%), Positives = 96/162 (59%), Gaps = 9/162 (5%)

Query: 1   MLNALTRQWGVVRTSDKPGLTQTINFF-------KLG--TKLCLVDLPGYGFAYAKEEVK 51
           ++NAL    G+ RTS+ PG TQ +N+F       + G    + LVD+PGYG+A A +E  
Sbjct: 50  LINALVGHKGLARTSNTPGRTQELNYFVPDGYSGEAGDLPPMALVDMPGYGYAQAPKEQV 109

Query: 52  DAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP 111
           DAW +LV +Y+  R +LKRV +LID + G+K  D ++++L++++   YQ+VLTKTD +  
Sbjct: 110 DAWTKLVFDYLRGRSTLKRVYVLIDARHGIKKNDEDVLALLDKAAVSYQIVLTKTDKIKA 169

Query: 112 IDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVL 153
             V R   +  E +K   +    V+  SS+ G GI  LR  +
Sbjct: 170 AGVPRLVAETLEKIKKRPAAFPEVLSTSSEKGEGIEDLRAAI 211

Necessary for normal cell division and for the maintenance of normal septation.

Rhizobium meliloti (strain 1021) (taxid: 266834)

>sp|Q89BP9|ENGB_BRAJA Probable GTP-binding protein EngB OS=Bradyrhizobium japonicum (strain USDA 110) GN=engB PE=3 SV=1

 Score =  118 bits (296), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 62/158 (39%), Positives = 97/158 (61%), Gaps = 2/158 (1%)

Query: 1   MLNALTRQWGVVRTSDKPGLTQTINFFKLGTK--LCLVDLPGYGFAYAKEEVKDAWEELV 58
           ++NALT +  + RTS  PG TQ + FF++  K  L LVD+PGYG+A A +    +W EL+
Sbjct: 54  LINALTGRNALARTSHTPGRTQELIFFEVPGKKDLRLVDMPGYGYAKAPKSQVASWTELI 113

Query: 59  KEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRA 118
            +++  R SL RV +LID + G+K  D E++  ++RS   YQ+VLTK D V P ++A R 
Sbjct: 114 HKFLLGRASLARVYVLIDARHGLKDVDLEILGTLDRSAVSYQIVLTKADQVKPSELASRI 173

Query: 119 MQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKI 156
            + E +L  + +    V+  SS+S  G+  LR  ++K+
Sbjct: 174 AETEAALAKHPAAFPNVLATSSRSATGMAELRAAMAKL 211

Necessary for normal cell division and for the maintenance of normal septation.

Bradyrhizobium japonicum (strain USDA 110) (taxid: 224911)

>sp|A6U5K8|ENGB_SINMW Probable GTP-binding protein EngB OS=Sinorhizobium medicae (strain WSM419) GN=engB PE=3 SV=1

 Score =  118 bits (295), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 61/162 (37%), Positives = 94/162 (58%), Gaps = 9/162 (5%)

Query: 1   MLNALTRQWGVVRTSDKPGLTQTINFFKLG---------TKLCLVDLPGYGFAYAKEEVK 51
           ++NAL    G+ RTS+ PG TQ +N+F              + LVD+PGYG+A A +E  
Sbjct: 50  LINALVGHKGLARTSNTPGRTQELNYFVPDGYSGEADDLPPMALVDMPGYGYAQAPKEQV 109

Query: 52  DAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP 111
           DAW +LV +Y+  R +LKRV +LID + G+K  D E+++L++++   YQ+VLTKTD +  
Sbjct: 110 DAWTKLVFDYLRGRSTLKRVYVLIDARHGIKKNDEEVLALLDKAAVSYQIVLTKTDKIKA 169

Query: 112 IDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVL 153
             V R   +  E ++   +    V+  SS+ G GI  LR  +
Sbjct: 170 AGVPRLLAETLEKIRKRPAAFPEVLSTSSEKGEGIEELRAAI 211

Necessary for normal cell division and for the maintenance of normal septation.

Sinorhizobium medicae (strain WSM419) (taxid: 366394)

>sp|Q98D85|ENGB_RHILO Probable GTP-binding protein EngB OS=Rhizobium loti (strain MAFF303099) GN=engB PE=3 SV=1

 Score =  117 bits (294), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 63/162 (38%), Positives = 97/162 (59%), Gaps = 9/162 (5%)

Query: 1   MLNALTRQWGVVRTSDKPGLTQTINFF------KLGTKL---CLVDLPGYGFAYAKEEVK 51
           ++NAL  Q G+ RTS+ PG TQ +N+F        G  L    LVD+PGYG+A A +E  
Sbjct: 44  LINALVNQKGLARTSNTPGRTQELNYFVPDGFSGEGADLPPMALVDMPGYGYATAPKEKV 103

Query: 52  DAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP 111
           D W +LV +Y+  RV+LKRV +LID + G+K +D E++SL++++   YQ+VLTKTD +  
Sbjct: 104 DEWTKLVFDYLKGRVTLKRVYVLIDARHGIKAKDDEVLSLLDKAAVSYQIVLTKTDKIKV 163

Query: 112 IDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVL 153
             V R   +  + +K   +    V+  SS+ G G+  L+  +
Sbjct: 164 AGVPRLIEETLQKIKKRPAAFPFVLATSSEKGEGLEELQAAI 205

Necessary for normal cell division and for the maintenance of normal septation.

Rhizobium loti (strain MAFF303099) (taxid: 266835)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	162
255553339	489	GTP binding protein, putative [Ricinus c	1.0	0.331	0.840	3e-80
449439155	535	PREDICTED: uncharacterized protein LOC10	1.0	0.302	0.876	3e-80
224145468	305	predicted protein [Populus trichocarpa]	0.993	0.527	0.882	9e-79
449516736	373	PREDICTED: probable GTP-binding protein	1.0	0.434	0.858	7e-78
356537641	535	PREDICTED: uncharacterized protein LOC10	0.993	0.300	0.857	2e-77
356569473	540	PREDICTED: uncharacterized protein LOC10	0.993	0.298	0.850	5e-77
42573726	465	putative GTP-binding protein CGPA [Arabi	0.993	0.346	0.844	1e-76
297793371	467	predicted protein [Arabidopsis lyrata su	0.993	0.344	0.838	3e-76
343172533	343	putative GTP-binding protein, partial [S	0.993	0.469	0.850	2e-75
343172535	343	putative GTP-binding protein, partial [S	0.993	0.469	0.844	5e-75

>gi|255553339|ref|XP_002517711.1| GTP binding protein, putative [Ricinus communis] gi|223543109|gb|EEF44643.1| GTP binding protein, putative [Ricinus communis]

 Score =  302 bits (773), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 148/176 (84%), Positives = 155/176 (88%), Gaps = 14/176 (7%)

Query: 1   MLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 60
           +LNALTRQWGV RTSDKPGLTQTINFF LG KLCLVDLPGYGFAYAKEEVKDAWE+LVKE
Sbjct: 314 LLNALTRQWGVARTSDKPGLTQTINFFSLGPKLCLVDLPGYGFAYAKEEVKDAWEDLVKE 373

Query: 61  YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQ 120
           YVSTRV LKRVCLLIDTKWG+KPRDHELI+LMERSQTKYQ+VLTKTD VFPIDVARRAMQ
Sbjct: 374 YVSTRVGLKRVCLLIDTKWGMKPRDHELINLMERSQTKYQIVLTKTDVVFPIDVARRAMQ 433

Query: 121 IEESLKANNSLVQPV--------------MMVSSKSGAGIRSLRTVLSKIARFAKV 162
           IEESLKAN S+VQPV              MMVSSKSGAGIRSLRTVLSKIA FAK+
Sbjct: 434 IEESLKANKSIVQPVFFDVSQSNYVVFTQMMVSSKSGAGIRSLRTVLSKIAWFAKL 489

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449439155|ref|XP_004137353.1| PREDICTED: uncharacterized protein LOC101223165 [Cucumis sativus]

 Score =  302 bits (773), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 142/162 (87%), Positives = 152/162 (93%)

Query: 1   MLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 60
           +LNALTRQWGVVRTSDKPGLTQTINFF LG+KL LVDLPGYGFAYAKEEVKDAWEELVKE
Sbjct: 374 LLNALTRQWGVVRTSDKPGLTQTINFFNLGSKLSLVDLPGYGFAYAKEEVKDAWEELVKE 433

Query: 61  YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQ 120
           YVSTRV L+RVCLL+DTKWG+KPRD ELI LMERSQTKYQVVLTKTDTVFP+DVARRAMQ
Sbjct: 434 YVSTRVGLRRVCLLVDTKWGMKPRDQELIDLMERSQTKYQVVLTKTDTVFPMDVARRAMQ 493

Query: 121 IEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARFAKV 162
           IEE L  N S+VQP+MMVSSKSGAGIRSLR+VL+ IARFAKV
Sbjct: 494 IEERLTRNKSIVQPLMMVSSKSGAGIRSLRSVLATIARFAKV 535

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224145468|ref|XP_002325653.1| predicted protein [Populus trichocarpa] gi|222862528|gb|EEF00035.1| predicted protein [Populus trichocarpa]

 Score =  297 bits (761), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 143/162 (88%), Positives = 153/162 (94%), Gaps = 1/162 (0%)

Query: 1   MLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 60
           +LN+LTRQWGV RTSDKPGLTQTINFF+LG  +CLVDLPGYGFAYAKEEVKD+WEELVKE
Sbjct: 145 LLNSLTRQWGVARTSDKPGLTQTINFFELGN-VCLVDLPGYGFAYAKEEVKDSWEELVKE 203

Query: 61  YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQ 120
           YVS RV+LKRVCLLIDTKWG+KPRD ELI LMER QTKYQVV+TKTD VFPIDVARRAMQ
Sbjct: 204 YVSMRVNLKRVCLLIDTKWGMKPRDRELIDLMERYQTKYQVVMTKTDLVFPIDVARRAMQ 263

Query: 121 IEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARFAKV 162
           IEESLKAN SLVQPVMMVSSKSGAGIRS+RTVLSKIARFAK+
Sbjct: 264 IEESLKANKSLVQPVMMVSSKSGAGIRSVRTVLSKIARFAKL 305

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449516736|ref|XP_004165402.1| PREDICTED: probable GTP-binding protein EngB-like [Cucumis sativus]

 Score =  294 bits (753), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 139/162 (85%), Positives = 150/162 (92%)

Query: 1   MLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 60
           +LNALTRQWGVVRTSDKPGLTQ + FF LG+KL LVDLPGYGFAYAKEEVKDAWEELVKE
Sbjct: 212 LLNALTRQWGVVRTSDKPGLTQVLKFFNLGSKLSLVDLPGYGFAYAKEEVKDAWEELVKE 271

Query: 61  YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQ 120
           YVSTRV L+RVCLL+DTKWG+KPRD ELI LMERSQTKYQVVLTKTDTVFP+DVARRAMQ
Sbjct: 272 YVSTRVGLRRVCLLVDTKWGMKPRDQELIDLMERSQTKYQVVLTKTDTVFPMDVARRAMQ 331

Query: 121 IEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARFAKV 162
           IEE L  N S+VQP+MMVSSKSGAGIRSLR+VL+ IARFAKV
Sbjct: 332 IEERLTRNKSIVQPLMMVSSKSGAGIRSLRSVLATIARFAKV 373

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356537641|ref|XP_003537334.1| PREDICTED: uncharacterized protein LOC100801850 [Glycine max]

 Score =  293 bits (750), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 138/161 (85%), Positives = 149/161 (92%)

Query: 1   MLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 60
           +LNALTRQWGVVRTSDKPGLTQTINFF LGTK CLVDLPGYGFAYAKEEVK++WEELVKE
Sbjct: 373 LLNALTRQWGVVRTSDKPGLTQTINFFNLGTKHCLVDLPGYGFAYAKEEVKESWEELVKE 432

Query: 61  YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQ 120
           YVSTRV L+RVCLLIDTKWG+KPRD ELI LMERS+TKYQ+VLTKTD VFPIDVARRAMQ
Sbjct: 433 YVSTRVGLRRVCLLIDTKWGMKPRDLELIELMERSKTKYQIVLTKTDVVFPIDVARRAMQ 492

Query: 121 IEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARFAK 161
           IEESL  N S+V+PVMMVSSKSGAGIRSLRT L+ I RFA+
Sbjct: 493 IEESLFQNKSVVKPVMMVSSKSGAGIRSLRTALANITRFAR 533

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356569473|ref|XP_003552925.1| PREDICTED: uncharacterized protein LOC100799694 [Glycine max]

 Score =  291 bits (746), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 137/161 (85%), Positives = 149/161 (92%)

Query: 1   MLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 60
           +LNALTRQWGVVRTSDKPGLTQTINFF+LGTK CLVDLPGYGFAYAKEEVK++WEELVKE
Sbjct: 378 LLNALTRQWGVVRTSDKPGLTQTINFFQLGTKHCLVDLPGYGFAYAKEEVKESWEELVKE 437

Query: 61  YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQ 120
           YVSTRV LKRVCLLIDTKWG+KPRD ELI LMERS+TKYQ+VLTKTD VFPIDVARRAMQ
Sbjct: 438 YVSTRVGLKRVCLLIDTKWGMKPRDLELIELMERSKTKYQIVLTKTDMVFPIDVARRAMQ 497

Query: 121 IEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARFAK 161
           IEE+L  N S+V+PVMMVSS SGAGIRSLRT L+ I RFA+
Sbjct: 498 IEENLFQNKSVVKPVMMVSSNSGAGIRSLRTALANITRFAR 538

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42573726|ref|NP_974959.1| putative GTP-binding protein CGPA [Arabidopsis thaliana] gi|222423373|dbj|BAH19659.1| AT5G58370 [Arabidopsis thaliana] gi|332009661|gb|AED97044.1| putative GTP-binding protein CGPA [Arabidopsis thaliana]

 Score =  290 bits (743), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 136/161 (84%), Positives = 150/161 (93%)

Query: 1   MLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 60
           +LNALTRQWGVVRTSDKPGLTQTINFF LG K+ LVDLPGYGFA+AK+EVK+AWE+LVKE
Sbjct: 304 LLNALTRQWGVVRTSDKPGLTQTINFFGLGPKVRLVDLPGYGFAFAKDEVKEAWEDLVKE 363

Query: 61  YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQ 120
           YVSTR SLKRVCLL+DTKWG+KPRD ELI+LMERS TKYQ+VLTKTD VFPIDVARRAMQ
Sbjct: 364 YVSTRTSLKRVCLLVDTKWGMKPRDQELINLMERSNTKYQIVLTKTDVVFPIDVARRAMQ 423

Query: 121 IEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARFAK 161
           IEE LKAN S+VQP+MMVSS+SGAGI SLRT L+KIARFAK
Sbjct: 424 IEEKLKANRSIVQPLMMVSSRSGAGIGSLRTALAKIARFAK 464

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297793371|ref|XP_002864570.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297310405|gb|EFH40829.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  289 bits (740), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 135/161 (83%), Positives = 150/161 (93%)

Query: 1   MLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 60
           +LNALTRQWGVVRTSDKPGLTQTINFF LG K+ LVDLPGYGFA+AK+EVK+AWE+LVKE
Sbjct: 306 LLNALTRQWGVVRTSDKPGLTQTINFFGLGPKVRLVDLPGYGFAFAKDEVKEAWEDLVKE 365

Query: 61  YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQ 120
           YVSTR SLKRVCLL+DTKWG+KPRD ELI+LMERS TKYQ+VLTKTD VFP+DVARRAMQ
Sbjct: 366 YVSTRTSLKRVCLLVDTKWGMKPRDQELINLMERSNTKYQIVLTKTDVVFPMDVARRAMQ 425

Query: 121 IEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARFAK 161
           IEE LKAN S+VQP+MMVSS+SGAGI SLRT L+KIARFAK
Sbjct: 426 IEEKLKANRSIVQPLMMVSSRSGAGIGSLRTALAKIARFAK 466

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|343172533|gb|AEL98970.1| putative GTP-binding protein, partial [Silene latifolia]

 Score =  286 bits (732), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 137/161 (85%), Positives = 148/161 (91%)

Query: 1   MLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 60
           +LNALTRQWGVVRTSDKPG TQ+INFF LG+KL LVDLPGYGFAYAK+EVK+AWEELVKE
Sbjct: 183 LLNALTRQWGVVRTSDKPGHTQSINFFNLGSKLNLVDLPGYGFAYAKDEVKEAWEELVKE 242

Query: 61  YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQ 120
           YVSTRV LKRVCLLIDTKWG+KPRD ELI LMERSQTKYQVVLTKTD VFPIDVARRAMQ
Sbjct: 243 YVSTRVGLKRVCLLIDTKWGMKPRDIELIHLMERSQTKYQVVLTKTDVVFPIDVARRAMQ 302

Query: 121 IEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARFAK 161
           IEE+LK + S+VQPVMMVSSKSGAGIR LRT L K+AR+ K
Sbjct: 303 IEETLKEHKSIVQPVMMVSSKSGAGIRCLRTALVKMARYLK 343

Source: Silene latifolia

Species: Silene latifolia

Genus: Silene

Family: Caryophyllaceae

Order: Caryophyllales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|343172535|gb|AEL98971.1| putative GTP-binding protein, partial [Silene latifolia]

 Score =  285 bits (728), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 136/161 (84%), Positives = 148/161 (91%)

Query: 1   MLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 60
           +LNALTRQWGVVRTSDKPG TQ+INFF LG+KL LVDLPGYGFAYAK+EVK+AWEELVKE
Sbjct: 183 LLNALTRQWGVVRTSDKPGHTQSINFFNLGSKLNLVDLPGYGFAYAKDEVKEAWEELVKE 242

Query: 61  YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQ 120
           Y+STRV LKRVCLLIDTKWG+KPRD ELI LMERSQTKYQVVLTKTD VFPIDVARRAMQ
Sbjct: 243 YLSTRVGLKRVCLLIDTKWGMKPRDIELIHLMERSQTKYQVVLTKTDVVFPIDVARRAMQ 302

Query: 121 IEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARFAK 161
           IEE+LK + S+VQPVMMVSSKSGAGIR LRT L K+AR+ K
Sbjct: 303 IEETLKEHKSIVQPVMMVSSKSGAGIRCLRTALVKMARYLK 343

Source: Silene latifolia

Species: Silene latifolia

Genus: Silene

Family: Caryophyllaceae

Order: Caryophyllales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	162
TAIR|locus:2161243	465	AT5G58370 [Arabidopsis thalian	0.993	0.346	0.844	1.4e-69
UNIPROTKB|Q5LW13	217	engB "Probable GTP-binding pro	0.962	0.718	0.397	3.5e-27
TIGR_CMR|SPO_0530	217	SPO_0530 "GTP-binding protein"	0.962	0.718	0.397	3.5e-27
DICTYBASE|DDB_G0348940	743	DDB_G0348940 [Dictyostelium di	0.938	0.204	0.389	5.7e-26
UNIPROTKB|Q2GKS7	193	engB "Probable GTP-binding pro	0.956	0.803	0.354	1e-22
TIGR_CMR|APH_0421	193	APH_0421 "putative GTP-binding	0.956	0.803	0.354	1e-22
GENEDB_PFALCIPARUM|PF14_0400	1000	PF14_0400 "hypothetical protei	0.956	0.155	0.356	1.9e-21
UNIPROTKB|Q8IL49	1000	PF14_0400 "GTP binding protein	0.956	0.155	0.356	1.9e-21
DICTYBASE|DDB_G0268824	432	DDB_G0268824 [Dictyostelium di	0.956	0.358	0.314	1.1e-18
UNIPROTKB|Q9KVN0	220	engB "Probable GTP-binding pro	0.932	0.686	0.384	1.7e-18

TAIR|locus:2161243 AT5G58370 [Arabidopsis thaliana (taxid:3702)]

 Score = 705 (253.2 bits), Expect = 1.4e-69, P = 1.4e-69
 Identities = 136/161 (84%), Positives = 150/161 (93%)

Query:     1 MLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 60
             +LNALTRQWGVVRTSDKPGLTQTINFF LG K+ LVDLPGYGFA+AK+EVK+AWE+LVKE
Sbjct:   304 LLNALTRQWGVVRTSDKPGLTQTINFFGLGPKVRLVDLPGYGFAFAKDEVKEAWEDLVKE 363

Query:    61 YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQ 120
             YVSTR SLKRVCLL+DTKWG+KPRD ELI+LMERS TKYQ+VLTKTD VFPIDVARRAMQ
Sbjct:   364 YVSTRTSLKRVCLLVDTKWGMKPRDQELINLMERSNTKYQIVLTKTDVVFPIDVARRAMQ 423

Query:   121 IEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARFAK 161
             IEE LKAN S+VQP+MMVSS+SGAGI SLRT L+KIARFAK
Sbjct:   424 IEEKLKANRSIVQPLMMVSSRSGAGIGSLRTALAKIARFAK 464

GO:0000917 "barrier septum assembly" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0019243 "methylglyoxal catabolic process to D-lactate" evidence=RCA

UNIPROTKB|Q5LW13 engB "Probable GTP-binding protein EngB" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 305 (112.4 bits), Expect = 3.5e-27, P = 3.5e-27
 Identities = 62/156 (39%), Positives = 100/156 (64%)

Query:     1 MLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 60
             ++NALT   G+ R S+ PG TQ INFF  G +L LVDLPGYG+A A  +V + W++L+K+
Sbjct:    61 LINALTGTKGLARASNTPGRTQEINFFTQGPELYLVDLPGYGYANAPLKVVEKWQKLLKQ 120

Query:    61 YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQ 120
             Y+S R +L+R  +LID + GVK  D E++ L++ S   +Q VLTK D V   +  +   Q
Sbjct:   121 YLSGRQTLRRAFVLIDARHGVKAVDDEIMKLLDTSAVTFQCVLTKADKVKAAERDKVLAQ 180

Query:   121 IEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKI 156
             +  +L  + +    +++ SS+ G GI +LR++++ +
Sbjct:   181 VRAALAKHPAAYPEIVLTSSEKGDGIATLRSIIAHL 216

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|SPO_0530 SPO_0530 "GTP-binding protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 305 (112.4 bits), Expect = 3.5e-27, P = 3.5e-27
 Identities = 62/156 (39%), Positives = 100/156 (64%)

Query:     1 MLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 60
             ++NALT   G+ R S+ PG TQ INFF  G +L LVDLPGYG+A A  +V + W++L+K+
Sbjct:    61 LINALTGTKGLARASNTPGRTQEINFFTQGPELYLVDLPGYGYANAPLKVVEKWQKLLKQ 120

Query:    61 YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQ 120
             Y+S R +L+R  +LID + GVK  D E++ L++ S   +Q VLTK D V   +  +   Q
Sbjct:   121 YLSGRQTLRRAFVLIDARHGVKAVDDEIMKLLDTSAVTFQCVLTKADKVKAAERDKVLAQ 180

Query:   121 IEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKI 156
             +  +L  + +    +++ SS+ G GI +LR++++ +
Sbjct:   181 VRAALAKHPAAYPEIVLTSSEKGDGIATLRSIIAHL 216

GO:0005525 "GTP binding" evidence=ISS

GO:0008150 "biological_process" evidence=ND

DICTYBASE|DDB_G0348940 DDB_G0348940 [Dictyostelium discoideum (taxid:44689)]

 Score = 303 (111.7 bits), Expect = 5.7e-26, P = 5.7e-26
 Identities = 60/154 (38%), Positives = 100/154 (64%)

Query:     1 MLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 60
             ++NALT++ G+ +TSDKPG TQ+IN+F+LG+ L LVDLPGYGFA+AKE + + W ++   
Sbjct:   291 LINALTQR-GLAKTSDKPGQTQSINWFELGSTLYLVDLPGYGFAFAKETLVEQWSDITIH 349

Query:    61 YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQ 120
             Y++ R  +  V +LID++ G+K  D  L+  +++ + K  ++LTK D   P D+ +R   
Sbjct:   350 YLTERKCISCVFILIDSRHGLKDSDRNLLLELDKKKIKTHIILTKADLTKPEDLVKRISI 409

Query:   121 IEESLKANNSL-VQPVMMVSSKSGAGIRSLRTVL 153
               + ++ N      PV+ +SSK+ +GI  L  ++
Sbjct:   410 TNQEIQTNYRYSTTPVLPISSKNLSGISDLSKLI 443

GO:0005525 "GTP binding" evidence=IEA

GO:0000917 "barrier septum assembly" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|Q2GKS7 engB "Probable GTP-binding protein EngB" [Anaplasma phagocytophilum HZ (taxid:212042)]

 Score = 263 (97.6 bits), Expect = 1.0e-22, P = 1.0e-22
 Identities = 55/155 (35%), Positives = 91/155 (58%)

Query:     1 MLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 60
             ++NA+T      +TS  PG T+ INF+     + LVDLPGYG++ A +E    + ++++ 
Sbjct:    37 LINAITNNKKNAKTSSNPGSTRQINFYLNKGIVALVDLPGYGYSKASKEATRGYLDVMEH 96

Query:    61 YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQ 120
             Y+ +R +L+R+ LLID++ G+K  D + +  +E     Y +VLTK D +    +      
Sbjct:    97 YLMSREALQRLVLLIDSRIGLKEIDRDFLCWLEEHGIYYSIVLTKADKLSEQALGSMVSF 156

Query:   121 IEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSK 155
             ++   +  N L+QP+M VSSKSG GIR L   +S+
Sbjct:   157 VQNQAQGGNFLLQPIMWVSSKSGRGIRELAHEISR 191

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|APH_0421 APH_0421 "putative GTP-binding protein EngB" [Anaplasma phagocytophilum HZ (taxid:212042)]

 Score = 263 (97.6 bits), Expect = 1.0e-22, P = 1.0e-22
 Identities = 55/155 (35%), Positives = 91/155 (58%)

Query:     1 MLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 60
             ++NA+T      +TS  PG T+ INF+     + LVDLPGYG++ A +E    + ++++ 
Sbjct:    37 LINAITNNKKNAKTSSNPGSTRQINFYLNKGIVALVDLPGYGYSKASKEATRGYLDVMEH 96

Query:    61 YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQ 120
             Y+ +R +L+R+ LLID++ G+K  D + +  +E     Y +VLTK D +    +      
Sbjct:    97 YLMSREALQRLVLLIDSRIGLKEIDRDFLCWLEEHGIYYSIVLTKADKLSEQALGSMVSF 156

Query:   121 IEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSK 155
             ++   +  N L+QP+M VSSKSG GIR L   +S+
Sbjct:   157 VQNQAQGGNFLLQPIMWVSSKSGRGIRELAHEISR 191

GO:0005525 "GTP binding" evidence=ISS

GO:0008150 "biological_process" evidence=ND

GENEDB_PFALCIPARUM|PF14_0400 PF14_0400 "hypothetical protein, conserved" [Plasmodium falciparum (taxid:5833)]

 Score = 263 (97.6 bits), Expect = 1.9e-21, P = 1.9e-21
 Identities = 56/157 (35%), Positives = 91/157 (57%)

Query:     1 MLNALTRQWGVVRTSDKPGLTQTINFFKLGTK--LCLVDLPGYGFAYAKEEVKDAWEELV 58
             ++N L  +    + S  PG T+ I+F+K+G    +CLVDLPGYG+A  KEE++  W E  
Sbjct:   129 LINELCGRTNKAKVSKIPGCTKEIHFYKIGKPCLMCLVDLPGYGYAECKEELRLQWNEFT 188

Query:    59 KEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRA 118
               Y+  R +LK+V +LID + G+K  D EL+   +R   KYQ+VL+K D +   D+A + 
Sbjct:   189 LFYLKNRKNLKKVFVLIDCRVGLKTSDKELLHFFDRYNIKYQIVLSKCDLLNTKDLAIKI 248

Query:   119 MQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSK 155
               I + +    +L +P++ +SS     +  LR  ++K
Sbjct:   249 QIINQDILPFKNLEKPLIPLSSIKNQNLSELRNEIAK 285

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q8IL49 PF14_0400 "GTP binding protein, putative" [Plasmodium falciparum 3D7 (taxid:36329)]

 Score = 263 (97.6 bits), Expect = 1.9e-21, P = 1.9e-21
 Identities = 56/157 (35%), Positives = 91/157 (57%)

Query:     1 MLNALTRQWGVVRTSDKPGLTQTINFFKLGTK--LCLVDLPGYGFAYAKEEVKDAWEELV 58
             ++N L  +    + S  PG T+ I+F+K+G    +CLVDLPGYG+A  KEE++  W E  
Sbjct:   129 LINELCGRTNKAKVSKIPGCTKEIHFYKIGKPCLMCLVDLPGYGYAECKEELRLQWNEFT 188

Query:    59 KEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRA 118
               Y+  R +LK+V +LID + G+K  D EL+   +R   KYQ+VL+K D +   D+A + 
Sbjct:   189 LFYLKNRKNLKKVFVLIDCRVGLKTSDKELLHFFDRYNIKYQIVLSKCDLLNTKDLAIKI 248

Query:   119 MQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSK 155
               I + +    +L +P++ +SS     +  LR  ++K
Sbjct:   249 QIINQDILPFKNLEKPLIPLSSIKNQNLSELRNEIAK 285

GO:0008150 "biological_process" evidence=ND

DICTYBASE|DDB_G0268824 DDB_G0268824 [Dictyostelium discoideum (taxid:44689)]

 Score = 230 (86.0 bits), Expect = 1.1e-18, P = 1.1e-18
 Identities = 49/156 (31%), Positives = 86/156 (55%)

Query:     1 MLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 60
             +LN++ R+  +   S   G T+TINF+++  KL LVDLPGYGFA   ++    W   + E
Sbjct:   247 LLNSVLRR-DLAYVSKSAGCTKTINFYQIWEKLYLVDLPGYGFAKVSKKKSTVWGNAISE 305

Query:    61 YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQ 120
             ++ T  +L +V LLID++  +   D E +SL+++ +  +Q+VLTK D   P  +      
Sbjct:   306 FLLTSPNLFKVFLLIDSRNKIHKNDIEAMSLLDQHKVSFQIVLTKIDKTTPSMLRSLYGS 365

Query:   121 IEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKI 156
             ++E ++     +  ++  SS    GI  +RT +  +
Sbjct:   366 LKEEIQKTTCCLPTIIQTSSVDSKGIDDIRTTILNV 401

GO:0005525 "GTP binding" evidence=IEA

GO:0000917 "barrier septum assembly" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|Q9KVN0 engB "Probable GTP-binding protein EngB" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 223 (83.6 bits), Expect = 1.7e-18, P = 1.7e-18
 Identities = 60/156 (38%), Positives = 83/156 (53%)

Query:     2 LNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 61
             LN LT Q  + +TS  PG TQ IN FK+     +VDLPGYGFA    E+K  W+  + EY
Sbjct:    44 LNRLTNQKNLAKTSKTPGRTQLINLFKVADGCHIVDLPGYGFAQVPLEMKLKWQRALGEY 103

Query:    62 VSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRA--M 119
             +  R SLK + +L+D +  +K  D +LI          QV+LTK D +     AR+A  +
Sbjct:   104 LQKRQSLKGLVVLMDIRHPMKDLDQQLIIWAVECGIPVQVMLTKADKLK--SGARKAQVL 161

Query:   120 QIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSK 155
             ++ E  K     V  V   SS SG G+ +LR  L +
Sbjct:   162 KVREEAKTFGGDVA-VDAFSSLSGIGVDTLRAKLDE 196

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q2GKS7	ENGB_ANAPZ	No assigned EC number	0.3548	0.9567	0.8031	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	162
cd01876	170	cd01876, YihA_EngB, YihA (EngB) GTPase family	4e-51
PRK00454	196	PRK00454, engB, GTP-binding protein YsxC; Reviewed	4e-45
TIGR03598	178	TIGR03598, GTPase_YsxC, ribosome biogenesis GTP-bi	1e-40
COG0218	200	COG0218, COG0218, Predicted GTPase [General functi	8e-40
pfam01926	117	pfam01926, MMR_HSR1, 50S ribosome-binding GTPase	3e-11
cd04171	170	cd04171, SelB, SelB, the dedicated elongation fact	6e-08
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	6e-08
cd00880	161	cd00880, Era_like, E	4e-07
cd00881	183	cd00881, GTP_translation_factor, GTP translation f	1e-05
PRK04213	201	PRK04213, PRK04213, GTP-binding protein; Provision	3e-05
cd04163	168	cd04163, Era, E	2e-04
TIGR03918	391	TIGR03918, GTP_HydF, [FeFe] hydrogenase H-cluster	7e-04
COG1161	322	COG1161, COG1161, Predicted GTPases [General funct	0.001
COG3276	447	COG3276, SelB, Selenocysteine-specific translation	0.001
PRK00089	292	PRK00089, era, GTPase Era; Reviewed	0.001

>gnl|CDD|206665 cd01876, YihA_EngB, YihA (EngB) GTPase family

 Score =  160 bits (408), Expect = 4e-51
 Identities = 66/156 (42%), Positives = 97/156 (62%), Gaps = 1/156 (0%)

Query: 2   LNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 61
           +NALT +  + RTS  PG TQ INFF +G K  LVDLPGYG+A   +EV++ W +L++EY
Sbjct: 16  INALTNRKKLARTSKTPGRTQLINFFNVGDKFRLVDLPGYGYAKVSKEVREKWGKLIEEY 75

Query: 62  VSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQI 121
           +  R +LK V LLID + G  P D E++  +E     + +VLTK D +   ++A+   +I
Sbjct: 76  LENRENLKGVVLLIDARHGPTPIDLEMLEFLEELGIPFLIVLTKADKLKKSELAKVLKKI 135

Query: 122 EESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 157
           +E L   N L  PV++ SSK G GI  LR ++++  
Sbjct: 136 KEELNLFNIL-PPVILFSSKKGTGIDELRALIAEWL 170

The YihA (EngB) subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target. Length = 170

>gnl|CDD|234770 PRK00454, engB, GTP-binding protein YsxC; Reviewed

 Score =  146 bits (371), Expect = 4e-45
 Identities = 59/156 (37%), Positives = 94/156 (60%), Gaps = 3/156 (1%)

Query: 2   LNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 61
           +NALT +  + RTS  PG TQ INFF++  KL LVDLPGYG+A   +E K+ W++L++EY
Sbjct: 41  INALTNRKNLARTSKTPGRTQLINFFEVNDKLRLVDLPGYGYAKVSKEEKEKWQKLIEEY 100

Query: 62  VSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQI 121
           + TR +LK V LLID++  +K  D ++I  ++       +VLTK D +   +  ++  ++
Sbjct: 101 LRTRENLKGVVLLIDSRHPLKELDLQMIEWLKEYGIPVLIVLTKADKLKKGERKKQLKKV 160

Query: 122 EESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 157
            ++LK  +     V++ SS    GI  LR  ++K  
Sbjct: 161 RKALKFGDD---EVILFSSLKKQGIDELRAAIAKWL 193

Length = 196

>gnl|CDD|213835 TIGR03598, GTPase_YsxC, ribosome biogenesis GTP-binding protein YsxC/EngB

 Score =  134 bits (339), Expect = 1e-40
 Identities = 54/145 (37%), Positives = 85/145 (58%), Gaps = 2/145 (1%)

Query: 2   LNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 61
           +NALT +  + RTS  PG TQ INFF++     LVDLPGYG+A   +E K+ W++L++EY
Sbjct: 35  INALTNRKKLARTSKTPGRTQLINFFEVNDGFRLVDLPGYGYAKVSKEEKEKWQKLIEEY 94

Query: 62  VSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQI 121
           +  R +LK V LL+D +  +K  D E+I  +        +VLTK D +   ++ ++  +I
Sbjct: 95  LEKRENLKGVVLLMDIRHPLKELDLEMIEWLRERGIPVLIVLTKADKLKKSELNKQLKKI 154

Query: 122 EESLKANNSLVQPVMMVSSKSGAGI 146
           +++LK +      V + SS    GI
Sbjct: 155 KKALKKDADD--SVQLFSSLKKTGI 177

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes [Protein synthesis, Other]. Length = 178

>gnl|CDD|223296 COG0218, COG0218, Predicted GTPase [General function prediction only]

 Score =  132 bits (335), Expect = 8e-40
 Identities = 61/152 (40%), Positives = 88/152 (57%)

Query: 2   LNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 61
           +NALT Q  + RTS  PG TQ INFF++  +L LVDLPGYG+A   +EVK+ W++L++EY
Sbjct: 41  INALTNQKNLARTSKTPGRTQLINFFEVDDELRLVDLPGYGYAKVPKEVKEKWKKLIEEY 100

Query: 62  VSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQI 121
           +  R +LK V LLID +   K  D E+I  +        VVLTK D +   +  ++  ++
Sbjct: 101 LEKRANLKGVVLLIDARHPPKDLDREMIEFLLELGIPVIVVLTKADKLKKSERNKQLNKV 160

Query: 122 EESLKANNSLVQPVMMVSSKSGAGIRSLRTVL 153
            E LK      Q V++ SS    GI  L+  +
Sbjct: 161 AEELKKPPPDDQWVVLFSSLKKKGIDELKAKI 192

Length = 200

>gnl|CDD|216791 pfam01926, MMR_HSR1, 50S ribosome-binding GTPase

 Score = 56.9 bits (138), Expect = 3e-11
 Identities = 27/107 (25%), Positives = 45/107 (42%), Gaps = 8/107 (7%)

Query: 2   LNALTRQWGVVRTSDKPGLTQ--TINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVK 59
           +NALT    V   SD PG T+   +    LG ++ LVD PG      +   +    E   
Sbjct: 16  INALTGA-KVAIVSDYPGTTRDPILGVLGLGRQIILVDTPGLI----EGASEGKGVEGFN 70

Query: 60  EYVSTRVSLKRVCLLIDTKWGVKPRDHELIS-LMERSQTKYQVVLTK 105
            ++        + L++D   G+   D E++  L +  +    +VL K
Sbjct: 71  RFLEAIREADLILLVVDASEGLTEDDEEILEELEKLPKKPIILVLNK 117

The full-length GTPase protein is required for the complete activity of the protein of interacting with the 50S ribosome and binding of both adenine and guanine nucleotides, with a preference for guanine nucleotide. Length = 117

>gnl|CDD|206734 cd04171, SelB, SelB, the dedicated elongation factor for delivery of selenocysteinyl-tRNA to the ribosome

 Score = 49.1 bits (118), Expect = 6e-08
 Identities = 40/148 (27%), Positives = 65/148 (43%), Gaps = 22/148 (14%)

Query: 17  KPGLTQTINF----FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVC 72
           K G+T  + F       G +L  +D+PG+             E+ VK  ++    +  V 
Sbjct: 32  KRGITIDLGFAYLDLPDGKRLGFIDVPGH-------------EKFVKNMLAGAGGIDAVL 78

Query: 73  LLIDTKWGVKP--RDH-ELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANN 129
           L++    G+ P  R+H E++ L+   +    VVLTK D V    +     +I E L    
Sbjct: 79  LVVAADEGIMPQTREHLEILELLGIKKG--LVVLTKADLVDEDRLELVEEEILELLAGTF 136

Query: 130 SLVQPVMMVSSKSGAGIRSLRTVLSKIA 157
               P+  VSS +G GI  L+  L ++A
Sbjct: 137 LADAPIFPVSSVTGEGIEELKNYLDELA 164

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryotes, they do share a common feature. Unlike in E. coli, these SECIS elements are located in the 3' UTRs. This group contains bacterial SelBs, as well as, one from archaea. Length = 170

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score = 49.0 bits (117), Expect = 6e-08
 Identities = 36/156 (23%), Positives = 59/156 (37%), Gaps = 20/156 (12%)

Query: 2   LNALTRQWGVVRTSDKPGLTQTINFFKLGT-----KLCLVDLPGYGFAYAKEEVKDAWEE 56
           LNAL     V   SD PG T+  + +         KL LVD PG       +E      E
Sbjct: 14  LNALLGGE-VGEVSDVPGTTRDPDVYVKELDKGKVKLVLVDTPGL------DEFGGLGRE 66

Query: 57  LVKEYVSTRVSLKRVCLLID-TKWGVKPR-DHELISLMERSQTKYQVVLTKTDTVFPIDV 114
            +   +     L  + L++D T    +      ++  + +      +V  K D +   +V
Sbjct: 67  ELARLLLRGADL--ILLVVDSTDRESEEDAKLLILRRLRKEGIPIILVGNKIDLLEEREV 124

Query: 115 ARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLR 150
                ++    +    L  PV  VS+K+G G+  L 
Sbjct: 125 E----ELLRLEELAKILGVPVFEVSAKTGEGVDELF 156

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|206646 cd00880, Era_like, E

 Score = 46.9 bits (112), Expect = 4e-07
 Identities = 40/163 (24%), Positives = 64/163 (39%), Gaps = 22/163 (13%)

Query: 2   LNALTRQWGVVRTSDKPGLTQTIN----FFKLGTKLCLVDLPGY--GFAYAKEEVKDAWE 55
           LNAL  Q  V   S  PG T+              + L+D PG        +E V++A +
Sbjct: 14  LNALLGQN-VGIVSPIPGTTRDPVRKEWELLPLGPVVLIDTPGLDEEGGLGRERVEEARQ 72

Query: 56  ELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHEL-ISLMERSQTKYQVVLTKTDTVFPIDV 114
                    R  L  V L++D+   + P + E  + L+        +VL K D V   + 
Sbjct: 73  VA------DRADL--VLLVVDS--DLTPVEEEAKLGLLRERGKPVLLVLNKIDLVPESEE 122

Query: 115 ARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 157
                + +  L        PV+ VS+  G GI  LR  ++++ 
Sbjct: 123 EELLRERKLEL----LPDLPVIAVSALPGEGIDELRKKIAELL 161

coli Ras-like protein (Era)-like GTPase. The Era (E. coli Ras-like protein)-like family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngB), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Length = 161

>gnl|CDD|206647 cd00881, GTP_translation_factor, GTP translation factor family primarily contains translation initiation, elongation and release factors

 Score = 42.7 bits (101), Expect = 1e-05
 Identities = 30/143 (20%), Positives = 51/143 (35%), Gaps = 21/143 (14%)

Query: 19  GLTQTINFFKLGTKLC---LVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLI 75
           G+T      +          +D PG+             E+  KE V          L++
Sbjct: 47  GITIKTGVVEFEWPKRRINFIDTPGH-------------EDFSKETVRGLAQADGALLVV 93

Query: 76  DTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQ-- 133
           D   GV+P+  E +++         V + K D V   D      +I+E LK         
Sbjct: 94  DANEGVEPQTREHLNIALAGGLPIIVAVNKIDRVGEEDFDEVLREIKELLKLIGFTFLKG 153

Query: 134 ---PVMMVSSKSGAGIRSLRTVL 153
              P++ +S+ +G GI  L   +
Sbjct: 154 KDVPIIPISALTGEGIEELLDAI 176

The GTP translation factor family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function. Length = 183

>gnl|CDD|179790 PRK04213, PRK04213, GTP-binding protein; Provisional

 Score = 42.2 bits (100), Expect = 3e-05
 Identities = 17/52 (32%), Positives = 31/52 (59%), Gaps = 2/52 (3%)

Query: 12 VRTSDKPGLTQTINFFKLGTKLCLVDLPGYGF-AYAKEEVKDAWEELVKEYV 62
          VR   +PG+T+  N +  G  + L DLPG+GF +   +EV++  ++ +  Y+
Sbjct: 34 VRVGKRPGVTRKPNHYDWGDFI-LTDLPGFGFMSGVPKEVQEKIKDEIVRYI 84

Length = 201

>gnl|CDD|206726 cd04163, Era, E

 Score = 39.8 bits (94), Expect = 2e-04
 Identities = 15/87 (17%), Positives = 35/87 (40%), Gaps = 4/87 (4%)

Query: 71  VCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNS 130
           V  ++D    +   D  ++ L+++S+T   +VL K D V   +     ++  + L     
Sbjct: 86  VLFVVDASEWIGEGDEFILELLKKSKTPVILVLNKIDLVKDKEDLLPLLEKLKELHPF-- 143

Query: 131 LVQPVMMVSSKSGAGIRSLRTVLSKIA 157
               +  +S+  G  +  L   + +  
Sbjct: 144 --AEIFPISALKGENVDELLEYIVEYL 168

coli Ras-like protein (Era) is a multifunctional GTPase. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA. Length = 168

>gnl|CDD|234395 TIGR03918, GTP_HydF, [FeFe] hydrogenase H-cluster maturation GTPase HydF

 Score = 38.3 bits (90), Expect = 7e-04
 Identities = 18/85 (21%), Positives = 34/85 (40%), Gaps = 9/85 (10%)

Query: 73  LLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLV 132
           L++D   G    + ELI  ++  +  Y VV+ K D         +  +            
Sbjct: 91  LVVDAGVGPGEYELELIEELKERKIPYIVVINKIDLGEESAELEKLEKKFG--------- 141

Query: 133 QPVMMVSSKSGAGIRSLRTVLSKIA 157
            P + VS+ +G GI  L+  + ++ 
Sbjct: 142 LPPIFVSALTGEGIDELKEAIIELL 166

This model describes the family of the [Fe] hydrogenase maturation protein HypF as characterized in Chlamydomonas reinhardtii and found, in an operon with radical SAM proteins HydE and HydG, in numerous bacteria. It has GTPase activity, can bind an 4Fe-4S cluster, and is essential for hydrogenase activity [Protein fate, Protein modification and repair]. Length = 391

>gnl|CDD|224083 COG1161, COG1161, Predicted GTPases [General function prediction only]

 Score = 38.1 bits (89), Expect = 0.001
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)

Query: 2   LNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGF 43
           +N L  +  V +TS++PG T+ I + KL   + L+D PG   
Sbjct: 149 INRLLGK-KVAKTSNRPGTTKGIQWIKLDDGIYLLDTPGIIP 189

Length = 322

>gnl|CDD|225815 COG3276, SelB, Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

 Score = 38.1 bits (89), Expect = 0.001
 Identities = 31/145 (21%), Positives = 60/145 (41%), Gaps = 20/145 (13%)

Query: 17  KPGLTQTINF--FKLGTK-LCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCL 73
           K G+T  + F   KL    +  +D+PG+              + +   ++    +    L
Sbjct: 33  KRGITIDLGFYYRKLEDGVMGFIDVPGH-------------PDFISNLLAGLGGIDYALL 79

Query: 74  LIDTKWGVKPRDHELISLMERSQTKYQ-VVLTKTDTVFPIDVARRAMQIEESLKANNSLV 132
           ++    G+  +  E + +++    K   +VLTK D V   D AR   +I++ L   +   
Sbjct: 80  VVAADEGLMAQTGEHLLILDLLGIKNGIIVLTKADRV---DEARIEQKIKQILADLSLAN 136

Query: 133 QPVMMVSSKSGAGIRSLRTVLSKIA 157
             +   S+K+G GI  L+  L  + 
Sbjct: 137 AKIFKTSAKTGRGIEELKNELIDLL 161

Length = 447

>gnl|CDD|234624 PRK00089, era, GTPase Era; Reviewed

 Score = 37.7 bits (89), Expect = 0.001
 Identities = 17/87 (19%), Positives = 40/87 (45%), Gaps = 8/87 (9%)

Query: 71  VCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNS 130
           V  ++D    + P D  ++  +++ +T   +VL K D V   +      ++   L+  + 
Sbjct: 88  VLFVVDADEKIGPGDEFILEKLKKVKTPVILVLNKIDLVKDKE------ELLPLLEELSE 141

Query: 131 LVQP--VMMVSSKSGAGIRSLRTVLSK 155
           L+    ++ +S+  G  +  L  V++K
Sbjct: 142 LMDFAEIVPISALKGDNVDELLDVIAK 168

Length = 292

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	162
COG0218	200	Predicted GTPase [General function prediction only	100.0
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	99.91
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	99.9
COG1160	444	Predicted GTPases [General function prediction onl	99.9
COG1159	298	Era GTPase [General function prediction only]	99.89
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	99.89
COG1160	444	Predicted GTPases [General function prediction onl	99.89
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	99.87
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.87
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	99.87
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.86
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	99.86
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	99.86
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	99.85
PRK04213	201	GTP-binding protein; Provisional	99.85
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.85
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	99.84
PRK00093	435	GTP-binding protein Der; Reviewed	99.84
COG0486	454	ThdF Predicted GTPase [General function prediction	99.84
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	99.84
PRK03003	472	GTP-binding protein Der; Reviewed	99.83
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	99.83
PRK15494	339	era GTPase Era; Provisional	99.83
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	99.83
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	99.83
PRK00089	292	era GTPase Era; Reviewed	99.82
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	99.81
PRK12299	335	obgE GTPase CgtA; Reviewed	99.8
cd00881	189	GTP_translation_factor GTP translation factor fami	99.8
COG3276	447	SelB Selenocysteine-specific translation elongatio	99.8
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.79
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	99.79
PRK12298	390	obgE GTPase CgtA; Reviewed	99.79
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.79
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.78
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	99.78
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	99.78
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.78
PRK12297	424	obgE GTPase CgtA; Reviewed	99.78
PRK12736	394	elongation factor Tu; Reviewed	99.77
PRK12296	500	obgE GTPase CgtA; Reviewed	99.77
PRK12317	425	elongation factor 1-alpha; Reviewed	99.77
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	99.77
PRK04000	411	translation initiation factor IF-2 subunit gamma;	99.77
PRK03003	472	GTP-binding protein Der; Reviewed	99.77
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.76
KOG2486	320	consensus Predicted GTPase [General function predi	99.76
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	99.76
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	99.75
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.75
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	99.75
PRK12735	396	elongation factor Tu; Reviewed	99.75
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.75
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	99.75
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	99.75
PRK00093	435	GTP-binding protein Der; Reviewed	99.74
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	99.74
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	99.74
PLN03127	447	Elongation factor Tu; Provisional	99.74
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	99.74
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	99.74
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	99.74
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	99.74
PRK05306	787	infB translation initiation factor IF-2; Validated	99.74
CHL00071	409	tufA elongation factor Tu	99.74
CHL00189	742	infB translation initiation factor 2; Provisional	99.74
TIGR00485	394	EF-Tu translation elongation factor TU. This align	99.74
PTZ00141	446	elongation factor 1- alpha; Provisional	99.74
KOG1423	379	consensus Ras-like GTPase ERA [Cell cycle control,	99.74
COG5257	415	GCD11 Translation initiation factor 2, gamma subun	99.73
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	99.73
PRK00049	396	elongation factor Tu; Reviewed	99.73
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	99.73
cd01881	176	Obg_like The Obg-like subfamily consists of five w	99.71
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	99.71
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	99.71
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	99.7
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.7
KOG0462	650	consensus Elongation factor-type GTP-binding prote	99.7
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	99.7
PLN03126	478	Elongation factor Tu; Provisional	99.69
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	99.69
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	99.69
KOG1145	683	consensus Mitochondrial translation initiation fac	99.68
PLN00043	447	elongation factor 1-alpha; Provisional	99.68
PRK14845	1049	translation initiation factor IF-2; Provisional	99.68
PRK11058	426	GTPase HflX; Provisional	99.68
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	99.68
PRK04004	586	translation initiation factor IF-2; Validated	99.67
PRK05433	600	GTP-binding protein LepA; Provisional	99.67
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	99.67
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.66
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	99.65
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	99.65
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	99.65
PRK15467	158	ethanolamine utilization protein EutP; Provisional	99.64
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	99.64
smart00178	184	SAR Sar1p-like members of the Ras-family of small	99.63
KOG1191	531	consensus Mitochondrial GTPase [Translation, ribos	99.62
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	99.62
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	99.62
PRK09866	741	hypothetical protein; Provisional	99.61
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	99.61
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	99.61
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	99.61
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	99.61
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	99.6
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	99.6
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	99.6
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	99.6
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	99.6
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	99.59
KOG0461	522	consensus Selenocysteine-specific elongation facto	99.59
PRK10218	607	GTP-binding protein; Provisional	99.59
PLN00223	181	ADP-ribosylation factor; Provisional	99.59
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	99.59
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	99.59
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	99.59
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	99.58
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	99.58
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	99.58
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	99.58
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	99.58
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	99.58
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	99.57
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	99.57
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	99.57
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	99.57
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	99.57
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	99.57
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	99.57
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	99.57
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	99.57
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	99.57
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	99.57
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	99.56
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	99.56
COG2262	411	HflX GTPases [General function prediction only]	99.56
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	99.56
PLN03118	211	Rab family protein; Provisional	99.56
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	99.56
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	99.56
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.55
cd01896	233	DRG The developmentally regulated GTP-binding prot	99.55
COG0050	394	TufB GTPases - translation elongation factors [Tra	99.55
KOG1489	366	consensus Predicted GTP-binding protein (ODN super	99.55
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	99.55
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	99.55
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	99.55
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	99.55
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	99.55
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	99.55
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	99.54
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	99.54
PTZ00133	182	ADP-ribosylation factor; Provisional	99.54
PLN03110	216	Rab GTPase; Provisional	99.54
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	99.53
KOG0458	603	consensus Elongation factor 1 alpha [Translation,	99.53
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	99.53
COG1084	346	Predicted GTPase [General function prediction only	99.53
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	99.52
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	99.52
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	99.52
PRK12739	691	elongation factor G; Reviewed	99.52
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	99.52
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	99.52
PTZ00099	176	rab6; Provisional	99.52
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.52
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	99.51
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	99.51
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	99.51
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	99.51
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	99.51
COG3596	296	Predicted GTPase [General function prediction only	99.5
PTZ00369	189	Ras-like protein; Provisional	99.5
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	99.5
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	99.5
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	99.5
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	99.49
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	99.49
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	99.49
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	99.49
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	99.48
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	99.48
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	99.48
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	99.47
PRK00007	693	elongation factor G; Reviewed	99.47
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	99.47
PLN03108	210	Rab family protein; Provisional	99.46
KOG0466	466	consensus Translation initiation factor 2, gamma s	99.46
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	99.46
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	99.46
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	99.46
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	99.45
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	99.45
PRK13768	253	GTPase; Provisional	99.44
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	99.44
KOG0460	449	consensus Mitochondrial translation elongation fac	99.44
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	99.44
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	99.43
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	99.43
COG0536	369	Obg Predicted GTPase [General function prediction	99.43
PRK00741	526	prfC peptide chain release factor 3; Provisional	99.43
KOG1144	1064	consensus Translation initiation factor 5B (eIF-5B	99.43
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	99.43
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	99.43
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	99.43
COG2229	187	Predicted GTPase [General function prediction only	99.42
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	99.42
KOG0078	207	consensus GTP-binding protein SEC4, small G protei	99.42
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	99.42
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	99.42
PRK12740	668	elongation factor G; Reviewed	99.42
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	99.41
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	99.41
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	99.41
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	99.41
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	99.41
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	99.41
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	99.41
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	99.4
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	99.4
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	99.4
TIGR00503	527	prfC peptide chain release factor 3. This translat	99.39
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	99.39
PRK13351	687	elongation factor G; Reviewed	99.38
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	99.38
KOG0092	200	consensus GTPase Rab5/YPT51 and related small G pr	99.38
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	99.38
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	99.37
KOG0084	205	consensus GTPase Rab1/YPT1, small G protein superf	99.37
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	99.37
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	99.37
COG5258	527	GTPBP1 GTPase [General function prediction only]	99.37
COG1163	365	DRG Predicted GTPase [General function prediction	99.37
COG1217	603	TypA Predicted membrane GTPase involved in stress	99.36
PRK09563	287	rbgA GTPase YlqF; Reviewed	99.35
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	99.35
cd04105	203	SR_beta Signal recognition particle receptor, beta	99.35
KOG1532	366	consensus GTPase XAB1, interacts with DNA repair p	99.34
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	99.34
KOG0094	221	consensus GTPase Rab6/YPT6/Ryh1, small G protein s	99.34
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	99.33
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	99.32
KOG0073	185	consensus GTP-binding ADP-ribosylation factor-like	99.32
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	99.32
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	99.32
KOG0098	216	consensus GTPase Rab2, small G protein superfamily	99.32
KOG0070	181	consensus GTP-binding ADP-ribosylation factor Arf1	99.31
PF05049	376	IIGP: Interferon-inducible GTPase (IIGP); InterPro	99.29
KOG1143	591	consensus Predicted translation elongation factor	99.28
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	99.27
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	99.25
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	99.24
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	99.24
PTZ00416	836	elongation factor 2; Provisional	99.24
KOG1490	620	consensus GTP-binding protein CRFG/NOG1 (ODN super	99.23
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	99.22
COG4108	528	PrfC Peptide chain release factor RF-3 [Translatio	99.21
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	99.21
PRK09435	332	membrane ATPase/protein kinase; Provisional	99.21
KOG0076	197	consensus GTP-binding ADP-ribosylation factor-like	99.2
KOG0072	182	consensus GTP-binding ADP-ribosylation factor-like	99.2
KOG0394	210	consensus Ras-related GTPase [General function pre	99.18
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	99.17
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	99.16
KOG0090	238	consensus Signal recognition particle receptor, be	99.16
KOG0075	186	consensus GTP-binding ADP-ribosylation factor-like	99.15
PRK07560	731	elongation factor EF-2; Reviewed	99.15
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	99.15
COG0480	697	FusA Translation elongation factors (GTPases) [Tra	99.14
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	99.14
KOG0071	180	consensus GTP-binding ADP-ribosylation factor Arf6	99.13
KOG0463	641	consensus GTP-binding protein GP-1 [General functi	99.13
PLN00116	843	translation elongation factor EF-2 subunit; Provis	99.1
KOG0083	192	consensus GTPase Rab26/Rab37, small G protein supe	99.1
KOG0091	213	consensus GTPase Rab39, small G protein superfamil	99.1
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	99.09
KOG0093	193	consensus GTPase Rab3, small G protein superfamily	99.08
KOG0087	222	consensus GTPase Rab11/YPT3, small G protein super	99.08
KOG0088	218	consensus GTPase Rab21, small G protein superfamil	99.06
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	99.05
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	99.03
PF00735	281	Septin: Septin; InterPro: IPR000038 Septins consti	99.03
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	99.03
PF09439	181	SRPRB: Signal recognition particle receptor beta s	99.02
PRK09602	396	translation-associated GTPase; Reviewed	99.0
KOG0081	219	consensus GTPase Rab27, small G protein superfamil	98.99
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	98.98
PRK12289	352	GTPase RsgA; Reviewed	98.98
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	98.96
KOG2655	366	consensus Septin family protein (P-loop GTPase) [C	98.96
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	98.95
KOG0095	213	consensus GTPase Rab30, small G protein superfamil	98.93
PTZ00258	390	GTP-binding protein; Provisional	98.93
KOG0086	214	consensus GTPase Rab4, small G protein superfamily	98.92
COG5019	373	CDC3 Septin family protein [Cell division and chro	98.92
KOG0097	215	consensus GTPase Rab14, small G protein superfamil	98.92
PRK00098	298	GTPase RsgA; Reviewed	98.92
KOG1547	336	consensus Septin CDC10 and related P-loop GTPases	98.89
TIGR02836	492	spore_IV_A stage IV sporulation protein A. A compa	98.89
KOG0079	198	consensus GTP-binding protein H-ray, small G prote	98.89
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.89
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	98.88
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	98.87
KOG0459	501	consensus Polypeptide release factor 3 [Translatio	98.87
KOG0074	185	consensus GTP-binding ADP-ribosylation factor-like	98.87
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	98.86
KOG0080	209	consensus GTPase Rab18, small G protein superfamil	98.86
PRK13796	365	GTPase YqeH; Provisional	98.85
PRK12288	347	GTPase RsgA; Reviewed	98.84
COG1100	219	GTPase SAR1 and related small G proteins [General	98.83
PRK01889	356	GTPase RsgA; Reviewed	98.81
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	98.77
KOG0465	721	consensus Mitochondrial elongation factor [Transla	98.74
KOG0395	196	consensus Ras-related GTPase [General function pre	98.73
KOG0468	971	consensus U5 snRNP-specific protein [Translation,	98.73
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	98.73
KOG0467	887	consensus Translation elongation factor 2/ribosome	98.65
PLN00023	334	GTP-binding protein; Provisional	98.65
PF04670	232	Gtr1_RagA: Gtr1/RagA G protein conserved region; I	98.57
TIGR00993	763	3a0901s04IAP86 chloroplast protein import componen	98.57
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	98.56
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	98.53
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	98.53
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.49
KOG0464	753	consensus Elongation factor G [Translation, riboso	98.48
COG1161	322	Predicted GTPases [General function prediction onl	98.47
KOG3859	406	consensus Septins (P-loop GTPases) [Cell cycle con	98.45
KOG4252	246	consensus GTP-binding protein [Signal transduction	98.44
KOG2485	335	consensus Conserved ATP/GTP binding protein [Gener	98.38
KOG2484	435	consensus GTPase [General function prediction only	98.38
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	98.35
cd01900	274	YchF YchF subfamily. YchF is a member of the Obg f	98.31
TIGR00101	199	ureG urease accessory protein UreG. This model rep	98.3
COG1162	301	Predicted GTPases [General function prediction onl	98.24
PRK09601	364	GTP-binding protein YchF; Reviewed	98.2
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	98.2
KOG0410	410	consensus Predicted GTP binding protein [General f	98.13
cd00066	317	G-alpha G protein alpha subunit. The alpha subunit	98.09
COG1161	322	Predicted GTPases [General function prediction onl	98.07
smart00275	342	G_alpha G protein alpha subunit. Subunit of G prot	98.07
KOG1424	562	consensus Predicted GTP-binding protein MMR1 [Gene	98.06
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	98.05
KOG0393	198	consensus Ras-related small GTPase, Rho type [Gene	98.01
COG0012	372	Predicted GTPase, probable translation factor [Tra	97.96
PRK09563	287	rbgA GTPase YlqF; Reviewed	97.89
KOG0077	193	consensus Vesicle coat complex COPII, GTPase subun	97.83
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	97.79
KOG1673	205	consensus Ras GTPases [General function prediction	97.78
PF06858	58	NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte	97.76
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	97.71
KOG2423	572	consensus Nucleolar GTPase [General function predi	97.71
KOG1954	532	consensus Endocytosis/signaling protein EHD1 [Sign	97.7
KOG3883	198	consensus Ras family small GTPase [Signal transduc	97.64
KOG0082	354	consensus G-protein alpha subunit (small G protein	97.62
KOG0469	842	consensus Elongation factor 2 [Translation, riboso	97.61
KOG1486	364	consensus GTP-binding protein DRG2 (ODN superfamil	97.6
cd03110	179	Fer4_NifH_child This protein family's function is	97.59
KOG1534	273	consensus Putative transcription factor FET5 [Tran	97.53
PRK13796	365	GTPase YqeH; Provisional	97.52
KOG0448	749	consensus Mitofusin 1 GTPase, involved in mitochon	97.51
TIGR00064	272	ftsY signal recognition particle-docking protein F	97.48
KOG0096	216	consensus GTPase Ran/TC4/GSP1 (nuclear protein tra	97.44
KOG3886	295	consensus GTP-binding protein [Signal transduction	97.34
PRK10416	318	signal recognition particle-docking protein FtsY;	97.34
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	97.34
PRK14974	336	cell division protein FtsY; Provisional	97.33
KOG1424	562	consensus Predicted GTP-binding protein MMR1 [Gene	97.3
COG3640	255	CooC CO dehydrogenase maturation factor [Cell divi	97.26
KOG1487	358	consensus GTP-binding protein DRG1 (ODN superfamil	97.18
PF00503	389	G-alpha: G-protein alpha subunit; InterPro: IPR001	97.15
PRK12288	347	GTPase RsgA; Reviewed	97.13
PRK12289	352	GTPase RsgA; Reviewed	97.02
COG5192	1077	BMS1 GTP-binding protein required for 40S ribosome	96.79
KOG4423	229	consensus GTP-binding protein-like, RAS superfamil	96.74
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	96.7
KOG0447	980	consensus Dynamin-like GTP binding protein [Genera	96.67
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	96.62
COG1149	284	MinD superfamily P-loop ATPase containing an inser	96.45
KOG3905	473	consensus Dynein light intermediate chain [Cell mo	96.31
PRK00771	437	signal recognition particle protein Srp54; Provisi	96.27
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	96.27
cd03114	148	ArgK-like The function of this protein family is u	96.18
PF05783	472	DLIC: Dynein light intermediate chain (DLIC); Inte	96.15
cd02038	139	FleN-like FleN is a member of the Fer4_NifH superf	96.14
TIGR00092	368	GTP-binding protein YchF. This predicted GTP-bindi	96.14
cd03112	158	CobW_like The function of this protein family is u	96.11
TIGR03348	1169	VI_IcmF type VI secretion protein IcmF. Members of	96.06
PRK00098	298	GTPase RsgA; Reviewed	96.06
KOG2484	435	consensus GTPase [General function prediction only	95.98
COG1162	301	Predicted GTPases [General function prediction onl	95.91
cd03115	173	SRP The signal recognition particle (SRP) mediates	95.72
TIGR00959	428	ffh signal recognition particle protein. This mode	95.69
COG0523	323	Putative GTPases (G3E family) [General function pr	95.66
PRK10867	433	signal recognition particle protein; Provisional	95.6
PRK06731	270	flhF flagellar biosynthesis regulator FlhF; Valida	95.44
KOG0446	657	consensus Vacuolar sorting protein VPS1, dynamin,	95.39
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	95.33
cd01851	224	GBP Guanylate-binding protein (GBP), N-terminal do	95.28
cd02036	179	MinD Bacterial cell division requires the formatio	95.22
KOG0099	379	consensus G protein subunit Galphas, small G prote	95.2
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	95.15
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	95.14
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	95.12
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	95.06
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	95.05
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	95.01
PF10609	81	ParA: ParA/MinD ATPase like; InterPro: IPR019591 T	95.0
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	94.98
KOG2485	335	consensus Conserved ATP/GTP binding protein [Gener	94.63
KOG1491	391	consensus Predicted GTP-binding protein (ODN super	94.62
TIGR01969	251	minD_arch cell division ATPase MinD, archaeal. Thi	94.55
KOG0052	391	consensus Translation elongation factor EF-1 alpha	94.54
cd02037	169	MRP-like MRP (Multiple Resistance and pH adaptatio	94.52
cd03111	106	CpaE_like This protein family consists of proteins	94.47
KOG2423	572	consensus Nucleolar GTPase [General function predi	94.35
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	94.27
COG0541	451	Ffh Signal recognition particle GTPase [Intracellu	94.11
TIGR01007	204	eps_fam capsular exopolysaccharide family. This mo	94.1
KOG3887	347	consensus Predicted small GTPase involved in nucle	93.96
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	93.94
KOG0085	359	consensus G protein subunit Galphaq/Galphay, small	93.83
PF14331	266	ImcF-related_N: ImcF-related N-terminal domain	93.72
KOG0780	483	consensus Signal recognition particle, subunit Srp	93.63
PRK13505	557	formate--tetrahydrofolate ligase; Provisional	93.61
PHA02518	211	ParA-like protein; Provisional	93.16
COG3523	1188	IcmF Type VI protein secretion system component Va	92.88
TIGR01968	261	minD_bact septum site-determining protein MinD. Th	92.78
TIGR02475	341	CobW cobalamin biosynthesis protein CobW. A broade	92.77
cd02035	217	ArsA ArsA ATPase functionas as an efflux pump loca	92.76
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	92.74
PF01656	195	CbiA: CobQ/CobB/MinD/ParA nucleotide binding domai	92.11
COG0552	340	FtsY Signal recognition particle GTPase [Intracell	92.03
CHL00175	281	minD septum-site determining protein; Validated	91.8
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	91.6
PRK13849	231	putative crown gall tumor protein VirC1; Provision	91.3
PF07015	231	VirC1: VirC1 protein; InterPro: IPR009744 This fam	91.16
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	90.1
cd00550	254	ArsA_ATPase Oxyanion-translocating ATPase (ArsA).	90.07
TIGR03371	246	cellulose_yhjQ cellulose synthase operon protein Y	89.61
cd02032	267	Bchl_like This family of proteins contains bchL an	89.59
PF06564	243	YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ p	89.4
TIGR01005	754	eps_transp_fam exopolysaccharide transport protein	88.79
PF02492	178	cobW: CobW/HypB/UreG, nucleotide-binding domain; I	88.25
PRK10818	270	cell division inhibitor MinD; Provisional	87.98
PF08438	109	MMR_HSR1_C: GTPase of unknown function C-terminal;	87.65
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	87.63
PRK11519	719	tyrosine kinase; Provisional	86.42
COG4963	366	CpaE Flp pilus assembly protein, ATPase CpaE [Intr	85.69
cd02117	212	NifH_like This family contains the NifH (iron prot	85.47
PF09547	492	Spore_IV_A: Stage IV sporulation protein A (spore_	84.9
COG0455	262	flhG Antiactivator of flagellar biosynthesis FleN,	84.65
PRK11670	369	antiporter inner membrane protein; Provisional	84.28
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	83.96
KOG1533	290	consensus Predicted GTPase [General function predi	83.86
TIGR03029	274	EpsG chain length determinant protein tyrosine kin	83.64
PRK11537	318	putative GTP-binding protein YjiA; Provisional	83.33
COG0489	265	Mrp ATPases involved in chromosome partitioning [C	82.46
PRK13705	388	plasmid-partitioning protein SopA; Provisional	82.33
KOG2743	391	consensus Cobalamin synthesis protein [Coenzyme tr	82.27
TIGR03815	322	CpaE_hom_Actino helicase/secretion neighborhood Cp	82.07
cd00477	524	FTHFS Formyltetrahydrofolate synthetase (FTHFS) ca	81.44
PRK09841	726	cryptic autophosphorylating protein tyrosine kinas	81.35
CHL00072	290	chlL photochlorophyllide reductase subunit L	80.76
PRK13507	587	formate--tetrahydrofolate ligase; Provisional	80.47

>COG0218 Predicted GTPase [General function prediction only]

Probab=100.00  E-value=5.6e-32  Score=179.47  Aligned_cols=158  Identities=39%  Similarity=0.567  Sum_probs=143.7

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEeCCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCC
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG   80 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~   80 (162)
                      |||+|+++.+.+++|.+||.|+.+++|.++.++.+||.||||...++...++.|..++.+|+....+...+++++|++.+
T Consensus        40 lIN~l~~~k~LArtSktPGrTq~iNff~~~~~~~lVDlPGYGyAkv~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~  119 (200)
T COG0218          40 LINALTNQKNLARTSKTPGRTQLINFFEVDDELRLVDLPGYGYAKVPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHP  119 (200)
T ss_pred             HHHHHhCCcceeecCCCCCccceeEEEEecCcEEEEeCCCcccccCCHHHHHHHHHHHHHHHhhchhheEEEEEEECCCC
Confidence            68999998788999999999999999999988999999999999999999999999999999999889999999999999


Q ss_pred             CCccHHHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293           81 VKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR  158 (162)
Q Consensus        81 ~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~  158 (162)
                      +...|.++++++...++|+++++||+|.+...+....+..+.+.+........-++.+|+.++.|+++++..|.+.+.
T Consensus       120 ~~~~D~em~~~l~~~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~  197 (200)
T COG0218         120 PKDLDREMIEFLLELGIPVIVVLTKADKLKKSERNKQLNKVAEELKKPPPDDQWVVLFSSLKKKGIDELKAKILEWLK  197 (200)
T ss_pred             CcHHHHHHHHHHHHcCCCeEEEEEccccCChhHHHHHHHHHHHHhcCCCCccceEEEEecccccCHHHHHHHHHHHhh
Confidence            999999999999999999999999999998888887777787766655442223899999999999999999988764

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=99.91  E-value=7.1e-23  Score=137.84  Aligned_cols=146  Identities=36%  Similarity=0.598  Sum_probs=119.1

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEeCCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCC
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG   80 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~   80 (162)
                      |+|+|++......+++.+|+|++..++..+..+.++||||++........++.+...+..+++....++++++|+|++.+
T Consensus        34 lin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~  113 (179)
T TIGR03598        34 LINALTNRKKLARTSKTPGRTQLINFFEVNDGFRLVDLPGYGYAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHP  113 (179)
T ss_pred             HHHHHhCCCCcccccCCCCcceEEEEEEeCCcEEEEeCCCCccccCChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCC
Confidence            58999988446778899999999888877677999999999876555555667777777888777778999999999988


Q ss_pred             CCccHHHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHH
Q 031293           81 VKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIR  147 (162)
Q Consensus        81 ~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~  147 (162)
                      +...+.+++..+...++|+++++||+|+.+..+.....+.+++.+...+. .++++++||++|+|++
T Consensus       114 ~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~-~~~v~~~Sa~~g~gi~  179 (179)
T TIGR03598       114 LKELDLEMLEWLRERGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDAD-DPSVQLFSSLKKTGID  179 (179)
T ss_pred             CCHHHHHHHHHHHHcCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccC-CCceEEEECCCCCCCC
Confidence            88888877788887889999999999998766666677778777776532 2489999999999974

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=99.90  E-value=4.1e-24  Score=139.11  Aligned_cols=137  Identities=26%  Similarity=0.317  Sum_probs=95.0

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEe---CCceEEEcCCCCccc-ccCHHHHHHHHHHHHHHHhcCcccceeEEEee
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFA-YAKEEVKDAWEELVKEYVSTRVSLKRVCLLID   76 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~---~~~~~ivDtpG~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid   76 (162)
                      |||+|+|+  ..+++++||+|++.....+   +..+.++|+||.... ..+.+     +....+++. ....|+++.|+|
T Consensus        16 LfN~Ltg~--~~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~e-----e~v~~~~l~-~~~~D~ii~VvD   87 (156)
T PF02421_consen   16 LFNALTGA--KQKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEE-----ERVARDYLL-SEKPDLIIVVVD   87 (156)
T ss_dssp             HHHHHHTT--SEEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHH-----HHHHHHHHH-HTSSSEEEEEEE
T ss_pred             HHHHHHCC--CceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcH-----HHHHHHHHh-hcCCCEEEEECC
Confidence            69999999  4889999999998876433   456999999996333 22221     334455554 234699999999


Q ss_pred             cCCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHH
Q 031293           77 TKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVL  153 (162)
Q Consensus        77 ~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i  153 (162)
                      ++..  ..+..++..+.+.++|+++|+||+|...+....-..+.+.+.++      .|++++||.+++|+++|+++|
T Consensus        88 a~~l--~r~l~l~~ql~e~g~P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg------~pvi~~sa~~~~g~~~L~~~I  156 (156)
T PF02421_consen   88 ATNL--ERNLYLTLQLLELGIPVVVVLNKMDEAERKGIEIDAEKLSERLG------VPVIPVSARTGEGIDELKDAI  156 (156)
T ss_dssp             GGGH--HHHHHHHHHHHHTTSSEEEEEETHHHHHHTTEEE-HHHHHHHHT------S-EEEEBTTTTBTHHHHHHHH
T ss_pred             CCCH--HHHHHHHHHHHHcCCCEEEEEeCHHHHHHcCCEECHHHHHHHhC------CCEEEEEeCCCcCHHHHHhhC
Confidence            9862  44566667788889999999999998644332222234444443      599999999999999999875

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.90  E-value=4.4e-23  Score=151.47  Aligned_cols=143  Identities=20%  Similarity=0.298  Sum_probs=112.2

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT   77 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~   77 (162)
                      |||+|+++ ..+.|++.||+|||..+...   +.+|.++||+|+..... .   +....+..+...+...+|+++||+|+
T Consensus        19 LFNRL~g~-r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~-~---~l~~~i~~Qa~~Ai~eADvilfvVD~   93 (444)
T COG1160          19 LFNRLTGR-RIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDE-D---ELQELIREQALIAIEEADVILFVVDG   93 (444)
T ss_pred             HHHHHhCC-eeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCc-h---HHHHHHHHHHHHHHHhCCEEEEEEeC
Confidence            69999999 78999999999999987433   67799999999943211 1   12234455666666778999999999


Q ss_pred             CCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293           78 KWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  157 (162)
Q Consensus        78 ~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~  157 (162)
                      +++++..|.++.++|+..++|+++|+||+|......      ...++. ..  ..-+++++||..|.|+.+|++++.+.+
T Consensus        94 ~~Git~~D~~ia~~Lr~~~kpviLvvNK~D~~~~e~------~~~efy-sl--G~g~~~~ISA~Hg~Gi~dLld~v~~~l  164 (444)
T COG1160          94 REGITPADEEIAKILRRSKKPVILVVNKIDNLKAEE------LAYEFY-SL--GFGEPVPISAEHGRGIGDLLDAVLELL  164 (444)
T ss_pred             CCCCCHHHHHHHHHHHhcCCCEEEEEEcccCchhhh------hHHHHH-hc--CCCCceEeehhhccCHHHHHHHHHhhc
Confidence            999999999999999988899999999999863221      111111 12  235899999999999999999999876

>COG1159 Era GTPase [General function prediction only]

Probab=99.89  E-value=4.1e-22  Score=139.44  Aligned_cols=147  Identities=21%  Similarity=0.261  Sum_probs=114.1

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEE--EEe-CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINF--FKL-GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT   77 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~--~~~-~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~   77 (162)
                      |+|+|.|+ ..+.+|++|.|||....  +.. +.++.++||||+....     ....+.+.+.+..+...+|+++||+|+
T Consensus        22 LlN~l~G~-KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk-----~~l~~~m~~~a~~sl~dvDlilfvvd~   95 (298)
T COG1159          22 LLNALVGQ-KISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPK-----HALGELMNKAARSALKDVDLILFVVDA   95 (298)
T ss_pred             HHHHHhcC-ceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcc-----hHHHHHHHHHHHHHhccCcEEEEEEec
Confidence            68999999 68999999999996554  333 6679999999985441     112234556666777888999999999


Q ss_pred             CCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcHH-HHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHh
Q 031293           78 KWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPID-VARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKI  156 (162)
Q Consensus        78 ~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~  156 (162)
                      .+++...+..+++.++..+.|+++++||+|.++... .....+.    +..... ...++++||++|.|++.|.+.+...
T Consensus        96 ~~~~~~~d~~il~~lk~~~~pvil~iNKID~~~~~~~l~~~~~~----~~~~~~-f~~ivpiSA~~g~n~~~L~~~i~~~  170 (298)
T COG1159          96 DEGWGPGDEFILEQLKKTKTPVILVVNKIDKVKPKTVLLKLIAF----LKKLLP-FKEIVPISALKGDNVDTLLEIIKEY  170 (298)
T ss_pred             cccCCccHHHHHHHHhhcCCCeEEEEEccccCCcHHHHHHHHHH----HHhhCC-cceEEEeeccccCCHHHHHHHHHHh
Confidence            999999998899999887789999999999987665 3332222    222222 2499999999999999999999887


Q ss_pred             hh
Q 031293          157 AR  158 (162)
Q Consensus       157 ~~  158 (162)
                      ++
T Consensus       171 Lp  172 (298)
T COG1159         171 LP  172 (298)
T ss_pred             CC
Confidence            65

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=99.89  E-value=3.6e-21  Score=131.14  Aligned_cols=155  Identities=38%  Similarity=0.597  Sum_probs=122.8

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEeCCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCC
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG   80 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~   80 (162)
                      |+|+|++....+.+++.+|+|+.+.++..+.++.++||||++........++.+...+..++.....++++++++|+..+
T Consensus        40 li~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~  119 (196)
T PRK00454         40 LINALTNRKNLARTSKTPGRTQLINFFEVNDKLRLVDLPGYGYAKVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHP  119 (196)
T ss_pred             HHHHHhCCCCcccccCCCCceeEEEEEecCCeEEEeCCCCCCCcCCCchHHHHHHHHHHHHHHhCccceEEEEEEecCCC
Confidence            58899987446788999999999888877778999999998765444445666777778888877778899999998877


Q ss_pred             CCccHHHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293           81 VKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR  158 (162)
Q Consensus        81 ~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~  158 (162)
                      ....+.++..++...++|+++++||+|+.+..+.+...+.+...+...   ..+++++||+++.|++++++.|...+.
T Consensus       120 ~~~~~~~i~~~l~~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~---~~~~~~~Sa~~~~gi~~l~~~i~~~~~  194 (196)
T PRK00454        120 LKELDLQMIEWLKEYGIPVLIVLTKADKLKKGERKKQLKKVRKALKFG---DDEVILFSSLKKQGIDELRAAIAKWLA  194 (196)
T ss_pred             CCHHHHHHHHHHHHcCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhc---CCceEEEEcCCCCCHHHHHHHHHHHhc
Confidence            766666667777777899999999999987665555555565555543   258999999999999999999987764

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.89  E-value=1.7e-22  Score=148.36  Aligned_cols=153  Identities=22%  Similarity=0.276  Sum_probs=120.1

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT   77 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~   77 (162)
                      |+|+|+++ ..+.+++.||||++.....+   +.+|.++||+|......-....|.+.  +.+.+.+...++++++|+|+
T Consensus       194 LiN~ilge-eR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~S--v~rt~~aI~~a~vvllviDa  270 (444)
T COG1160         194 LINAILGE-ERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYS--VARTLKAIERADVVLLVIDA  270 (444)
T ss_pred             HHHHhccC-ceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEe--ehhhHhHHhhcCEEEEEEEC
Confidence            68999999 78999999999998876444   66799999999955422111112121  33445555667999999999


Q ss_pred             CCCCCccHHHHHHHHHHhCCceEEEEeccCCCCc--HHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHH
Q 031293           78 KWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP--IDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSK  155 (162)
Q Consensus        78 ~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~  155 (162)
                      +++++.++..++.++.+.+.++++|+||+|++++  ....+..+.++..+...  .+.+++++||++|.|++++++.+.+
T Consensus       271 ~~~~~~qD~~ia~~i~~~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l--~~a~i~~iSA~~~~~i~~l~~~i~~  348 (444)
T COG1160         271 TEGISEQDLRIAGLIEEAGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFL--DFAPIVFISALTGQGLDKLFEAIKE  348 (444)
T ss_pred             CCCchHHHHHHHHHHHHcCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccc--cCCeEEEEEecCCCChHHHHHHHHH
Confidence            9999999999999999999999999999999876  44555556666655444  4579999999999999999999987


Q ss_pred             hhh
Q 031293          156 IAR  158 (162)
Q Consensus       156 ~~~  158 (162)
                      ...
T Consensus       349 ~~~  351 (444)
T COG1160         349 IYE  351 (444)
T ss_pred             HHH
Confidence            654

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=99.87  E-value=5.9e-21  Score=148.64  Aligned_cols=145  Identities=21%  Similarity=0.345  Sum_probs=117.6

Q ss_pred             ChhcccCCC-CceeccCCCCcceEEEEEEe----CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEe
Q 031293            1 MLNALTRQW-GVVRTSDKPGLTQTINFFKL----GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLI   75 (162)
Q Consensus         1 lin~L~~~~-~~~~~~~~~g~t~~~~~~~~----~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vi   75 (162)
                      |+|+|+|.+ .....+..+|.|.++.+..+    +..+.+||||||             +++++.++.+...+|++++|+
T Consensus        16 Li~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGh-------------e~fi~~m~~g~~~~D~~lLVV   82 (614)
T PRK10512         16 LLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGH-------------EKFLSNMLAGVGGIDHALLVV   82 (614)
T ss_pred             HHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCH-------------HHHHHHHHHHhhcCCEEEEEE
Confidence            578998863 12335567899998876544    445899999999             788888888889999999999


Q ss_pred             ecCCCCCccHHHHHHHHHHhCCc-eEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHH
Q 031293           76 DTKWGVKPRDHELISLMERSQTK-YQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLS  154 (162)
Q Consensus        76 d~~~~~~~~~~~~~~~l~~~~~~-~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~  154 (162)
                      |+.+++..++.+++..+...++| +++|+||+|+.++.......+.+.+.+...+....+++++||++|.|+++|+++|.
T Consensus        83 da~eg~~~qT~ehl~il~~lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~~L~~~L~  162 (614)
T PRK10512         83 ACDDGVMAQTREHLAILQLTGNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRGIDALREHLL  162 (614)
T ss_pred             ECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHH
Confidence            99999999999999888888888 57999999998766666666677777665554446899999999999999999998


Q ss_pred             Hhhh
Q 031293          155 KIAR  158 (162)
Q Consensus       155 ~~~~  158 (162)
                      +...
T Consensus       163 ~~~~  166 (614)
T PRK10512        163 QLPE  166 (614)
T ss_pred             Hhhc
Confidence            7543

>TIGR00436 era GTP-binding protein Era

Probab=99.87  E-value=9.2e-21  Score=135.15  Aligned_cols=146  Identities=15%  Similarity=0.146  Sum_probs=102.1

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEE--EE-eCCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINF--FK-LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT   77 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~--~~-~~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~   77 (162)
                      |+|+|++. ..+.++++|++|++...  .. .+.++.++||||+.....  .   ....+.+.+......+|++++|+|+
T Consensus        16 Lln~L~~~-~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~--~---l~~~~~~~~~~~l~~aDvvl~VvD~   89 (270)
T TIGR00436        16 LLNQLHGQ-KISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKH--S---LNRLMMKEARSAIGGVDLILFVVDS   89 (270)
T ss_pred             HHHHHhCC-cEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcc--h---HHHHHHHHHHHHHhhCCEEEEEEEC
Confidence            68999999 57889999999986542  11 245699999999854311  1   1122334444455678999999999


Q ss_pred             CCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293           78 KWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  157 (162)
Q Consensus        78 ~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~  157 (162)
                      +...... ..++..+...+.|+++|+||+|+..+.....   .+........  ..+++++||++|.|+++++++|.+.+
T Consensus        90 ~~~~~~~-~~i~~~l~~~~~p~ilV~NK~Dl~~~~~~~~---~~~~~~~~~~--~~~v~~iSA~~g~gi~~L~~~l~~~l  163 (270)
T TIGR00436        90 DQWNGDG-EFVLTKLQNLKRPVVLTRNKLDNKFKDKLLP---LIDKYAILED--FKDIVPISALTGDNTSFLAAFIEVHL  163 (270)
T ss_pred             CCCCchH-HHHHHHHHhcCCCEEEEEECeeCCCHHHHHH---HHHHHHhhcC--CCceEEEecCCCCCHHHHHHHHHHhC
Confidence            8754332 4556677777899999999999975443322   2222222221  23899999999999999999998876


Q ss_pred             h
Q 031293          158 R  158 (162)
Q Consensus       158 ~  158 (162)
                      +
T Consensus       164 ~  164 (270)
T TIGR00436       164 P  164 (270)
T ss_pred             C
Confidence            4

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=99.87  E-value=6.4e-21  Score=129.29  Aligned_cols=128  Identities=25%  Similarity=0.424  Sum_probs=102.4

Q ss_pred             CCCcceEEEEEE-----eCCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHH
Q 031293           17 KPGLTQTINFFK-----LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISL   91 (162)
Q Consensus        17 ~~g~t~~~~~~~-----~~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~   91 (162)
                      ..|.|.......     .+..++++||||+             ..++++..++...+|++++|+|+.+++.....+++..
T Consensus        51 ~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~-------------~~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~  117 (188)
T PF00009_consen   51 ERGITIDLSFISFEKNENNRKITLIDTPGH-------------EDFIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKI  117 (188)
T ss_dssp             HCTSSSSSEEEEEEBTESSEEEEEEEESSS-------------HHHHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHH
T ss_pred             hcccccccccccccccccccceeecccccc-------------cceeecccceecccccceeeeeccccccccccccccc
Confidence            456666544432     2456999999999             7788888888889999999999999999999999999


Q ss_pred             HHHhCCceEEEEeccCCCCcHHHHHHHHHHH-HHHHhcCCC---CCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293           92 MERSQTKYQVVLTKTDTVFPIDVARRAMQIE-ESLKANNSL---VQPVMMVSSKSGAGIRSLRTVLSKIAR  158 (162)
Q Consensus        92 l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~-~~~~~~~~~---~~~i~~~Sa~~~~g~~~l~~~i~~~~~  158 (162)
                      +...++|+++|+||+|+. .....+..+.+. ..++..+..   ..|++++||++|.|+++|++.|.+.++
T Consensus       118 ~~~~~~p~ivvlNK~D~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P  187 (188)
T PF00009_consen  118 LRELGIPIIVVLNKMDLI-EKELEEIIEEIKEKLLKEYGENGEEIVPVIPISALTGDGIDELLEALVELLP  187 (188)
T ss_dssp             HHHTT-SEEEEEETCTSS-HHHHHHHHHHHHHHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred             ccccccceEEeeeeccch-hhhHHHHHHHHHHHhccccccCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence            999999999999999999 555666666666 334444322   468999999999999999999998765

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>cd04171 SelB SelB subfamily

Probab=99.86  E-value=4.8e-20  Score=121.95  Aligned_cols=141  Identities=28%  Similarity=0.391  Sum_probs=97.1

Q ss_pred             ChhcccCCCCcee--ccCCCCcceEEEEEEe----CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEE
Q 031293            1 MLNALTRQWGVVR--TSDKPGLTQTINFFKL----GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLL   74 (162)
Q Consensus         1 lin~L~~~~~~~~--~~~~~g~t~~~~~~~~----~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v   74 (162)
                      |+|+|++.. ...  ....+++|.+..+...    +.++.+|||||+             +.+...+......+|++++|
T Consensus        16 l~~~l~~~~-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~-------------~~~~~~~~~~~~~ad~ii~V   81 (164)
T cd04171          16 LIKALTGIE-TDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGH-------------EKFIKNMLAGAGGIDLVLLV   81 (164)
T ss_pred             HHHHHhCcc-cccchhhhccCceEEeeeEEEEecCCcEEEEEECCCh-------------HHHHHHHHhhhhcCCEEEEE
Confidence            578888762 222  2335677776654322    456899999999             45555555556678999999


Q ss_pred             eecCCCCCccHHHHHHHHHHhCC-ceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHH
Q 031293           75 IDTKWGVKPRDHELISLMERSQT-KYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVL  153 (162)
Q Consensus        75 id~~~~~~~~~~~~~~~l~~~~~-~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i  153 (162)
                      +|+++++.....+.+..+...+. |+++++||+|+..........+.+.+.+...+....+++++||++|+|+++++.++
T Consensus        82 ~d~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l  161 (164)
T cd04171          82 VAADEGIMPQTREHLEILELLGIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGEGIEELKEYL  161 (164)
T ss_pred             EECCCCccHhHHHHHHHHHHhCCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcCHHHHHHHH
Confidence            99987655555555555555555 89999999999865433334445555555432234699999999999999999988


Q ss_pred             HH
Q 031293          154 SK  155 (162)
Q Consensus       154 ~~  155 (162)
                      ..
T Consensus       162 ~~  163 (164)
T cd04171         162 DE  163 (164)
T ss_pred             hh
Confidence            64

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=99.86  E-value=1.6e-19  Score=119.67  Aligned_cols=155  Identities=41%  Similarity=0.670  Sum_probs=121.3

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEeCCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCC
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG   80 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~   80 (162)
                      |+|+|++.......+.+++.|.....+..+..+.++||||++....+...++.+...+..++....+++.+++++|....
T Consensus        15 L~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~   94 (170)
T cd01876          15 LINALTNRKKLARTSKTPGKTQLINFFNVNDKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENRENLKGVVLLIDSRHG   94 (170)
T ss_pred             HHHHHhcCCceeeecCCCCcceeEEEEEccCeEEEecCCCccccccCHHHHHHHHHHHHHHHHhChhhhEEEEEEEcCcC
Confidence            57888854356778889999988888777778999999999887666666666777788888887788999999999877


Q ss_pred             CCccHHHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHh
Q 031293           81 VKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKI  156 (162)
Q Consensus        81 ~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~  156 (162)
                      ......++..++...+.|+++++||+|+.+..............+.. .....+++++||+++.|+++++++|.+.
T Consensus        95 ~~~~~~~~~~~l~~~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~Sa~~~~~~~~l~~~l~~~  169 (170)
T cd01876          95 PTEIDLEMLDWLEELGIPFLVVLTKADKLKKSELAKALKEIKKELKL-FEIDPPIILFSSLKGQGIDELRALIEKW  169 (170)
T ss_pred             CCHhHHHHHHHHHHcCCCEEEEEEchhcCChHHHHHHHHHHHHHHHh-ccCCCceEEEecCCCCCHHHHHHHHHHh
Confidence            66666777788888889999999999998665554444444444431 1223589999999999999999999875

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>cd01889 SelB_euk SelB subfamily

Probab=99.86  E-value=2.3e-20  Score=126.98  Aligned_cols=145  Identities=23%  Similarity=0.332  Sum_probs=101.6

Q ss_pred             ChhcccCCC-----CceeccCCCCcceEEEEEEe-----------------CCceEEEcCCCCcccccCHHHHHHHHHHH
Q 031293            1 MLNALTRQW-----GVVRTSDKPGLTQTINFFKL-----------------GTKLCLVDLPGYGFAYAKEEVKDAWEELV   58 (162)
Q Consensus         1 lin~L~~~~-----~~~~~~~~~g~t~~~~~~~~-----------------~~~~~ivDtpG~~~~~~~~~~~~~~~~~~   58 (162)
                      |+|+|++..     .....+..+|+|.+..+...                 +..+.++||||+             ..++
T Consensus        16 Li~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~-------------~~~~   82 (192)
T cd01889          16 LAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGH-------------ASLI   82 (192)
T ss_pred             HHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCc-------------HHHH
Confidence            456666521     12234557788876664211                 346899999999             5667


Q ss_pred             HHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHH----hcCCCCCC
Q 031293           59 KEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLK----ANNSLVQP  134 (162)
Q Consensus        59 ~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~~~  134 (162)
                      ..+..+...+|++++|+|+..+....+.+.+......+.|+++++||+|+......+...+.+++.+.    ..+....+
T Consensus        83 ~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  162 (192)
T cd01889          83 RTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEILCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKTRFKNSP  162 (192)
T ss_pred             HHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhcCcCCCC
Confidence            77777777789999999998876655555555555567899999999999865544444444444332    22223468


Q ss_pred             eEEeecCCCCCHHHHHHHHHHhhh
Q 031293          135 VMMVSSKSGAGIRSLRTVLSKIAR  158 (162)
Q Consensus       135 i~~~Sa~~~~g~~~l~~~i~~~~~  158 (162)
                      ++++||++|.|+++|++++.+++.
T Consensus       163 vi~iSa~~g~gi~~L~~~l~~~~~  186 (192)
T cd01889         163 IIPVSAKPGGGEAELGKDLNNLIV  186 (192)
T ss_pred             EEEEeccCCCCHHHHHHHHHhccc
Confidence            999999999999999999998764

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=99.85  E-value=3.2e-20  Score=144.04  Aligned_cols=145  Identities=24%  Similarity=0.368  Sum_probs=114.0

Q ss_pred             ChhcccCCCC-ceeccCCCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEee
Q 031293            1 MLNALTRQWG-VVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLID   76 (162)
Q Consensus         1 lin~L~~~~~-~~~~~~~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid   76 (162)
                      |+|+|++.+. .......+|+|.+..+..+   +..+.+||+|||             +.+++.++.+..++|++++|+|
T Consensus        16 Li~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGh-------------e~f~~~~~~g~~~aD~aILVVD   82 (581)
T TIGR00475        16 LLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGH-------------EKFISNAIAGGGGIDAALLVVD   82 (581)
T ss_pred             HHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCH-------------HHHHHHHHhhhccCCEEEEEEE
Confidence            5788987631 1223457889988876443   346899999999             7888888888889999999999


Q ss_pred             cCCCCCccHHHHHHHHHHhCCc-eEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCC-CCCeEEeecCCCCCHHHHHHHHH
Q 031293           77 TKWGVKPRDHELISLMERSQTK-YQVVLTKTDTVFPIDVARRAMQIEESLKANNSL-VQPVMMVSSKSGAGIRSLRTVLS  154 (162)
Q Consensus        77 ~~~~~~~~~~~~~~~l~~~~~~-~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~Sa~~~~g~~~l~~~i~  154 (162)
                      +.+++..++.+++..+...++| +++|+||+|+.++.......+.+.+.+...+.. ..+++++||++|.|+++++.+|.
T Consensus        83 a~~G~~~qT~ehl~il~~lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~GI~eL~~~L~  162 (581)
T TIGR00475        83 ADEGVMTQTGEHLAVLDLLGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTGQGIGELKKELK  162 (581)
T ss_pred             CCCCCcHHHHHHHHHHHHcCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCCCCchhHHHHHH
Confidence            9998888888888888888999 999999999987665555555666655544322 46999999999999999999998


Q ss_pred             Hhhh
Q 031293          155 KIAR  158 (162)
Q Consensus       155 ~~~~  158 (162)
                      +.++
T Consensus       163 ~l~~  166 (581)
T TIGR00475       163 NLLE  166 (581)
T ss_pred             HHHH
Confidence            7654

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>PRK04213 GTP-binding protein; Provisional

Probab=99.85  E-value=1.6e-19  Score=123.61  Aligned_cols=153  Identities=25%  Similarity=0.396  Sum_probs=105.5

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEeCCceEEEcCCCCccccc-CHHHHHHHHHHHHHHHh-cCcccceeEEEeecC
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYA-KEEVKDAWEELVKEYVS-TRVSLKRVCLLIDTK   78 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~ivDtpG~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~vi~vid~~   78 (162)
                      |+|+|++. . ..++..||+|+....+..+ ++.+|||||+|.... +...++.+...+..++. +...++++++|+|+.
T Consensus        25 Lin~l~~~-~-~~~~~~~~~t~~~~~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~  101 (201)
T PRK04213         25 LVRELTGK-K-VRVGKRPGVTRKPNHYDWG-DFILTDLPGFGFMSGVPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGK  101 (201)
T ss_pred             HHHHHhCC-C-CccCCCCceeeCceEEeec-ceEEEeCCccccccccCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCc
Confidence            58999887 2 5578899999887766666 599999999866432 33335666666666665 556779999999986


Q ss_pred             CCC-----------CccHHHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCC-C--CCCeEEeecCCCC
Q 031293           79 WGV-----------KPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNS-L--VQPVMMVSSKSGA  144 (162)
Q Consensus        79 ~~~-----------~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~-~--~~~i~~~Sa~~~~  144 (162)
                      ...           ...+.+++..+...++|+++|+||+|+....  .+..+.+.+.++.... .  ..+++++||++| 
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g-  178 (201)
T PRK04213        102 SFIEIIERWEGRGEIPIDVEMFDFLRELGIPPIVAVNKMDKIKNR--DEVLDEIAERLGLYPPWRQWQDIIAPISAKKG-  178 (201)
T ss_pred             cccccccccccCCCcHHHHHHHHHHHHcCCCeEEEEECccccCcH--HHHHHHHHHHhcCCccccccCCcEEEEecccC-
Confidence            421           1123455666666789999999999997543  2223344433332100 0  126899999999 


Q ss_pred             CHHHHHHHHHHhhhh
Q 031293          145 GIRSLRTVLSKIARF  159 (162)
Q Consensus       145 g~~~l~~~i~~~~~~  159 (162)
                      |+++++++|.+.+..
T Consensus       179 gi~~l~~~l~~~~~~  193 (201)
T PRK04213        179 GIEELKEAIRKRLHE  193 (201)
T ss_pred             CHHHHHHHHHHhhcC
Confidence            999999999987653

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.85  E-value=9.1e-20  Score=137.87  Aligned_cols=153  Identities=20%  Similarity=0.240  Sum_probs=109.1

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT   77 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~   77 (162)
                      |+|+|++. ....+++.||+|++.....+   +.++.++||||+.....-....+.+.  ..+.+...+.+|++++|+|+
T Consensus       188 Lin~l~~~-~~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~--~~~~~~~~~~ad~~ilV~D~  264 (429)
T TIGR03594       188 LVNALLGE-ERVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYS--VLRTLKAIERADVVLLVLDA  264 (429)
T ss_pred             HHHHHHCC-CeeecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHH--HHHHHHHHHhCCEEEEEEEC
Confidence            57999988 56778999999987654322   45699999999854422111111111  22333444567999999999


Q ss_pred             CCCCCccHHHHHHHHHHhCCceEEEEeccCCC-CcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHh
Q 031293           78 KWGVKPRDHELISLMERSQTKYQVVLTKTDTV-FPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKI  156 (162)
Q Consensus        78 ~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~  156 (162)
                      .++.+..+..++..+...++|+++|+||+|+. +........+.++..+...  ...+++++||++|.|++++++++.+.
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~--~~~~vi~~SA~~g~~v~~l~~~i~~~  342 (429)
T TIGR03594       265 TEGITEQDLRIAGLILEAGKALVIVVNKWDLVKDEKTREEFKKELRRKLPFL--DFAPIVFISALTGQGVDKLLDAIDEV  342 (429)
T ss_pred             CCCccHHHHHHHHHHHHcCCcEEEEEECcccCCCHHHHHHHHHHHHHhcccC--CCCceEEEeCCCCCCHHHHHHHHHHH
Confidence            99988888888888877789999999999998 3333444444444433322  23699999999999999999999876


Q ss_pred             hh
Q 031293          157 AR  158 (162)
Q Consensus       157 ~~  158 (162)
                      +.
T Consensus       343 ~~  344 (429)
T TIGR03594       343 YE  344 (429)
T ss_pred             HH
Confidence            54

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=99.84  E-value=4e-20  Score=139.42  Aligned_cols=114  Identities=18%  Similarity=0.225  Sum_probs=95.0

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCC-CCccHHHHHHHHHHhCCc-eEEEEeccCCC
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG-VKPRDHELISLMERSQTK-YQVVLTKTDTV  109 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~-~~~~~~~~~~~l~~~~~~-~ivv~nK~Dl~  109 (162)
                      .+.++|||||             +.++++++.+...+|.+++|+|+.++ ...+..+++..+...+++ +++|+||+|+.
T Consensus       118 ~i~~IDtPGH-------------~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lgi~~iIVvlNKiDlv  184 (460)
T PTZ00327        118 HVSFVDCPGH-------------DILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMKLKHIIILQNKIDLV  184 (460)
T ss_pred             eEeeeeCCCH-------------HHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcCCCcEEEEEeccccc
Confidence            5899999999             88999999999999999999999986 567777888777777765 78999999998


Q ss_pred             CcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293          110 FPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR  158 (162)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~  158 (162)
                      +.....+..+.+++.+........+++++||++|.|++.|+++|.+.++
T Consensus       185 ~~~~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp  233 (460)
T PTZ00327        185 KEAQAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIP  233 (460)
T ss_pred             CHHHHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCC
Confidence            7666666667777766544444579999999999999999999996554

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.84  E-value=2.2e-19  Score=136.01  Aligned_cols=153  Identities=21%  Similarity=0.228  Sum_probs=111.6

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT   77 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~   77 (162)
                      |+|+|++. ....++..||+|++.....+   +.++.++||||+.....-....+.+.  ....+...+.+|++++|+|+
T Consensus       189 lin~ll~~-~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~--~~~~~~~~~~ad~~ilViD~  265 (435)
T PRK00093        189 LINALLGE-ERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYS--VIRTLKAIERADVVLLVIDA  265 (435)
T ss_pred             HHHHHhCC-CceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHH--HHHHHHHHHHCCEEEEEEeC
Confidence            58999988 56788999999997654322   55699999999855422111112111  23334445667999999999


Q ss_pred             CCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293           78 KWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  157 (162)
Q Consensus        78 ~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~  157 (162)
                      ..+.+..+..++..+...++|+++|+||+|+.++....+..+.+...+...  ...+++++||++|.|++++++.+.+..
T Consensus       266 ~~~~~~~~~~i~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~~--~~~~i~~~SA~~~~gv~~l~~~i~~~~  343 (435)
T PRK00093        266 TEGITEQDLRIAGLALEAGRALVIVVNKWDLVDEKTMEEFKKELRRRLPFL--DYAPIVFISALTGQGVDKLLEAIDEAY  343 (435)
T ss_pred             CCCCCHHHHHHHHHHHHcCCcEEEEEECccCCCHHHHHHHHHHHHHhcccc--cCCCEEEEeCCCCCCHHHHHHHHHHHH
Confidence            999988888888888777899999999999986555555445555444322  336999999999999999999987654


Q ss_pred             h
Q 031293          158 R  158 (162)
Q Consensus       158 ~  158 (162)
                      .
T Consensus       344 ~  344 (435)
T PRK00093        344 E  344 (435)
T ss_pred             H
Confidence            3

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=99.84  E-value=2.3e-20  Score=137.64  Aligned_cols=142  Identities=23%  Similarity=0.277  Sum_probs=109.6

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT   77 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~   77 (162)
                      |+|+|+++ ..+.|++.||||||+....+   |..+.++||+|..+.   .+..|  ..-+++.......+|++++|+|+
T Consensus       233 LLNaL~~~-d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet---~d~VE--~iGIeRs~~~i~~ADlvL~v~D~  306 (454)
T COG0486         233 LLNALLGR-DRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRET---DDVVE--RIGIERAKKAIEEADLVLFVLDA  306 (454)
T ss_pred             HHHHHhcC-CceEecCCCCCccceEEEEEEECCEEEEEEecCCcccC---ccHHH--HHHHHHHHHHHHhCCEEEEEEeC
Confidence            68999999 68999999999999987655   667999999999654   22222  22366666777788999999999


Q ss_pred             CCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293           78 KWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  157 (162)
Q Consensus        78 ~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~  157 (162)
                      +.+.+..+..++. +...+.|+++|+||+|+.++.....        .. .. ...+++.+|+++|+|++.|.++|.+.+
T Consensus       307 ~~~~~~~d~~~~~-~~~~~~~~i~v~NK~DL~~~~~~~~--------~~-~~-~~~~~i~iSa~t~~Gl~~L~~~i~~~~  375 (454)
T COG0486         307 SQPLDKEDLALIE-LLPKKKPIIVVLNKADLVSKIELES--------EK-LA-NGDAIISISAKTGEGLDALREAIKQLF  375 (454)
T ss_pred             CCCCchhhHHHHH-hcccCCCEEEEEechhcccccccch--------hh-cc-CCCceEEEEecCccCHHHHHHHHHHHH
Confidence            9987777777777 4445789999999999986554221        11 11 113799999999999999999999876


Q ss_pred             hh
Q 031293          158 RF  159 (162)
Q Consensus       158 ~~  159 (162)
                      ..
T Consensus       376 ~~  377 (454)
T COG0486         376 GK  377 (454)
T ss_pred             hh
Confidence            53

>cd01894 EngA1 EngA1 subfamily

Probab=99.84  E-value=3.2e-19  Score=117.15  Aligned_cols=141  Identities=20%  Similarity=0.308  Sum_probs=100.7

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT   77 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~   77 (162)
                      |+|+|++. ....++..|++|++......   +..+.++||||++....  ...   ..+...+......+|++++++|+
T Consensus        13 l~~~l~~~-~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~--~~~---~~~~~~~~~~~~~~d~ii~v~d~   86 (157)
T cd01894          13 LFNRLTGR-RDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDE--GIS---KEIREQAELAIEEADVILFVVDG   86 (157)
T ss_pred             HHHHHhCC-cEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchh--HHH---HHHHHHHHHHHHhCCEEEEEEec
Confidence            57899988 45677888999876655433   45689999999955321  111   22233333344557999999999


Q ss_pred             CCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHh
Q 031293           78 KWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKI  156 (162)
Q Consensus        78 ~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~  156 (162)
                      ..+.+..+.++.+++...+.|+++|+||+|+......   ...    +...+  ..+++++|+++|.|++++++++.+.
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~---~~~----~~~~~--~~~~~~~Sa~~~~gv~~l~~~l~~~  156 (157)
T cd01894          87 REGLTPADEEIAKYLRKSKKPVILVVNKVDNIKEEDE---AAE----FYSLG--FGEPIPISAEHGRGIGDLLDAILEL  156 (157)
T ss_pred             cccCCccHHHHHHHHHhcCCCEEEEEECcccCChHHH---HHH----HHhcC--CCCeEEEecccCCCHHHHHHHHHhh
Confidence            8877777777778888778999999999999864432   111    22222  2378999999999999999999865

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.83  E-value=2.5e-19  Score=136.60  Aligned_cols=153  Identities=18%  Similarity=0.174  Sum_probs=106.3

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEE--Ee-CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFF--KL-GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT   77 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~--~~-~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~   77 (162)
                      |+|+|++. ....++..||+|++....  .. +..+.+|||||+..........+.+....  .....+.+|++++|+|+
T Consensus       227 Lin~l~~~-~~~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~--~~~~i~~ad~vilV~Da  303 (472)
T PRK03003        227 LLNKLAGE-ERSVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLR--THAAIEAAEVAVVLIDA  303 (472)
T ss_pred             HHHHHhCC-CcccccCCCCccCCcceEEEEECCEEEEEEECCCccccccccchHHHHHHHH--HHHHHhcCCEEEEEEeC
Confidence            68999998 467789999999876532  22 55689999999844321111122222211  11223457999999999


Q ss_pred             CCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293           78 KWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  157 (162)
Q Consensus        78 ~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~  157 (162)
                      .++.+..+..++..+...++|+++|+||+|+.+........+.+.+.+...  ...+++++||++|.|+++++..+.+.+
T Consensus       304 ~~~~s~~~~~~~~~~~~~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~--~~~~~~~~SAk~g~gv~~lf~~i~~~~  381 (472)
T PRK03003        304 SEPISEQDQRVLSMVIEAGRALVLAFNKWDLVDEDRRYYLEREIDRELAQV--PWAPRVNISAKTGRAVDKLVPALETAL  381 (472)
T ss_pred             CCCCCHHHHHHHHHHHHcCCCEEEEEECcccCChhHHHHHHHHHHHhcccC--CCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            998888888887777777899999999999985433222223333333322  236899999999999999999998876


Q ss_pred             h
Q 031293          158 R  158 (162)
Q Consensus       158 ~  158 (162)
                      +
T Consensus       382 ~  382 (472)
T PRK03003        382 E  382 (472)
T ss_pred             H
Confidence            5

>cd04165 GTPBP1_like GTPBP1-like

Probab=99.83  E-value=2.4e-19  Score=124.31  Aligned_cols=114  Identities=20%  Similarity=0.259  Sum_probs=94.8

Q ss_pred             CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCc--ccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccC
Q 031293           30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRV--SLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTD  107 (162)
Q Consensus        30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~D  107 (162)
                      +..++++||||+             +++.+.++.+..  .+|++++|+|+..+....+.+++.++...++|+++|+||+|
T Consensus        83 ~~~i~liDtpG~-------------~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~ip~ivvvNK~D  149 (224)
T cd04165          83 SKLVTFIDLAGH-------------ERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIPVFVVVTKID  149 (224)
T ss_pred             CcEEEEEECCCc-------------HHHHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEECcc
Confidence            456999999999             677777776664  68999999999999999999999999999999999999999


Q ss_pred             CCCcHHHHHHHHHHHHHHHh-----------------------cCCCCCCeEEeecCCCCCHHHHHHHHHHh
Q 031293          108 TVFPIDVARRAMQIEESLKA-----------------------NNSLVQPVMMVSSKSGAGIRSLRTVLSKI  156 (162)
Q Consensus       108 l~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~  156 (162)
                      +.++.......+.+.+.+..                       ......|++++||++|+|+++|+..|..+
T Consensus       150 ~~~~~~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~l  221 (224)
T cd04165         150 LAPANILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNLL  221 (224)
T ss_pred             ccCHHHHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHhc
Confidence            98777777777777776652                       12234699999999999999999998754

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>PRK15494 era GTPase Era; Provisional

Probab=99.83  E-value=1.9e-19  Score=131.88  Aligned_cols=146  Identities=21%  Similarity=0.189  Sum_probs=104.4

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEE--EEe-CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINF--FKL-GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT   77 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~--~~~-~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~   77 (162)
                      |+|+|++. ..+.++++|++|++...  +.. +.++.++||||+......     ....+.+.+......+|++++|+|+
T Consensus        68 Lin~l~~~-k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~-----l~~~~~r~~~~~l~~aDvil~VvD~  141 (339)
T PRK15494         68 LLNRIIGE-KLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGS-----LEKAMVRCAWSSLHSADLVLLIIDS  141 (339)
T ss_pred             HHHHHhCC-ceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCccc-----HHHHHHHHHHHHhhhCCEEEEEEEC
Confidence            68999998 57789999999986543  233 557999999998432211     1123344444455678999999999


Q ss_pred             CCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293           78 KWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  157 (162)
Q Consensus        78 ~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~  157 (162)
                      ..++...+..++..+...+.|.++|+||+|+.+. ..    ..+.+.+.... ...+++++||++|.|+++++++|.+.+
T Consensus       142 ~~s~~~~~~~il~~l~~~~~p~IlViNKiDl~~~-~~----~~~~~~l~~~~-~~~~i~~iSAktg~gv~eL~~~L~~~l  215 (339)
T PRK15494        142 LKSFDDITHNILDKLRSLNIVPIFLLNKIDIESK-YL----NDIKAFLTENH-PDSLLFPISALSGKNIDGLLEYITSKA  215 (339)
T ss_pred             CCCCCHHHHHHHHHHHhcCCCEEEEEEhhcCccc-cH----HHHHHHHHhcC-CCcEEEEEeccCccCHHHHHHHHHHhC
Confidence            8877776667777777778888899999998643 22    22333333222 124799999999999999999998866


Q ss_pred             h
Q 031293          158 R  158 (162)
Q Consensus       158 ~  158 (162)
                      +
T Consensus       216 ~  216 (339)
T PRK15494        216 K  216 (339)
T ss_pred             C
Confidence            4

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=99.83  E-value=4.4e-19  Score=121.64  Aligned_cols=115  Identities=22%  Similarity=0.227  Sum_probs=89.7

Q ss_pred             CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCC-CCccHHHHHHHHHHhCC-ceEEEEeccCC
Q 031293           31 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG-VKPRDHELISLMERSQT-KYQVVLTKTDT  108 (162)
Q Consensus        31 ~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~-~~~~~~~~~~~l~~~~~-~~ivv~nK~Dl  108 (162)
                      .++.+|||||+             ..++..++.+...+|++++|+|+..+ ......+.+..+...++ |+++|+||+|+
T Consensus        83 ~~i~~iDtPG~-------------~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvNK~Dl  149 (203)
T cd01888          83 RHVSFVDCPGH-------------EILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKIDL  149 (203)
T ss_pred             cEEEEEECCCh-------------HHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEEchhc
Confidence            56899999999             77888888888899999999999874 44455566666655565 68999999999


Q ss_pred             CCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293          109 VFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR  158 (162)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~  158 (162)
                      .+........+.+++.+........+++++||++|.|+++|+++|.+.++
T Consensus       150 ~~~~~~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~  199 (203)
T cd01888         150 VKEEQALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIP  199 (203)
T ss_pred             cCHHHHHHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCC
Confidence            86555555556666665543333468999999999999999999988764

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>cd01884 EF_Tu EF-Tu subfamily

Probab=99.83  E-value=6.3e-19  Score=119.87  Aligned_cols=129  Identities=19%  Similarity=0.224  Sum_probs=99.6

Q ss_pred             cCCCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHH
Q 031293           15 SDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISL   91 (162)
Q Consensus        15 ~~~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~   91 (162)
                      ...+|+|.+.....+   +.++.++||||+             ..++..+..+...+|++++|+|+.+++...+.+++..
T Consensus        46 E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~-------------~~~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~  112 (195)
T cd01884          46 EKARGITINTAHVEYETANRHYAHVDCPGH-------------ADYIKNMITGAAQMDGAILVVSATDGPMPQTREHLLL  112 (195)
T ss_pred             hhhcCccEEeeeeEecCCCeEEEEEECcCH-------------HHHHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHH
Confidence            347888887765444   456999999999             7788888888889999999999999988888889998


Q ss_pred             HHHhCCc-eEEEEeccCCCCcHHH-HHHHHHHHHHHHhcCC--CCCCeEEeecCCCCCH----------HHHHHHHHHh
Q 031293           92 MERSQTK-YQVVLTKTDTVFPIDV-ARRAMQIEESLKANNS--LVQPVMMVSSKSGAGI----------RSLRTVLSKI  156 (162)
Q Consensus        92 l~~~~~~-~ivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~--~~~~i~~~Sa~~~~g~----------~~l~~~i~~~  156 (162)
                      +...++| +++++||+|++...+. +...+++++.+...+.  ...+++++||++|.+.          ..|+++|.+.
T Consensus       113 ~~~~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~~v~iipiSa~~g~n~~~~~~w~~~~~~l~~~l~~~  191 (195)
T cd01884         113 ARQVGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGDNTPIVRGSALKALEGDDPNKWVKKILELLDALDSY  191 (195)
T ss_pred             HHHcCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccccCCeEEEeeCccccCCCCCCcchhcHhHHHHHHHhC
Confidence            9888887 7899999999754443 3344566666665432  3479999999999874          4666666543

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>PRK00089 era GTPase Era; Reviewed

Probab=99.82  E-value=6.5e-19  Score=127.07  Aligned_cols=147  Identities=21%  Similarity=0.239  Sum_probs=105.5

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEE--EEe-CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINF--FKL-GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT   77 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~--~~~-~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~   77 (162)
                      |+|+|+|. ..+.+++.|++|+....  ... +.++.++||||+.....  ...   ..+...+......+|++++++|+
T Consensus        21 Lin~L~g~-~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~--~l~---~~~~~~~~~~~~~~D~il~vvd~   94 (292)
T PRK00089         21 LLNALVGQ-KISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKR--ALN---RAMNKAAWSSLKDVDLVLFVVDA   94 (292)
T ss_pred             HHHHHhCC-ceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchh--HHH---HHHHHHHHHHHhcCCEEEEEEeC
Confidence            68999999 67889999999986543  222 35799999999854321  111   12233334445667999999999


Q ss_pred             CCCCCccHHHHHHHHHHhCCceEEEEeccCCC-CcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHh
Q 031293           78 KWGVKPRDHELISLMERSQTKYQVVLTKTDTV-FPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKI  156 (162)
Q Consensus        78 ~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~  156 (162)
                      ..++...+..++..+...+.|+++|+||+|+. +........+.+.+   ..  ...+++++||+++.|+++++++|.+.
T Consensus        95 ~~~~~~~~~~i~~~l~~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~---~~--~~~~i~~iSA~~~~gv~~L~~~L~~~  169 (292)
T PRK00089         95 DEKIGPGDEFILEKLKKVKTPVILVLNKIDLVKDKEELLPLLEELSE---LM--DFAEIVPISALKGDNVDELLDVIAKY  169 (292)
T ss_pred             CCCCChhHHHHHHHHhhcCCCEEEEEECCcCCCCHHHHHHHHHHHHh---hC--CCCeEEEecCCCCCCHHHHHHHHHHh
Confidence            88777777777777776679999999999998 33444433333332   12  23589999999999999999999887


Q ss_pred             hh
Q 031293          157 AR  158 (162)
Q Consensus       157 ~~  158 (162)
                      ++
T Consensus       170 l~  171 (292)
T PRK00089        170 LP  171 (292)
T ss_pred             CC
Confidence            63

>cd01895 EngA2 EngA2 subfamily

Probab=99.81  E-value=2.7e-18  Score=114.30  Aligned_cols=151  Identities=23%  Similarity=0.276  Sum_probs=102.3

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEE--EEe-CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINF--FKL-GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT   77 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~--~~~-~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~   77 (162)
                      |+|+|++. .....+..|++|+....  +.. +..+.+|||||++.........+.+.  ....+.....+|++++|+|+
T Consensus        18 li~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~--~~~~~~~~~~~d~vi~v~d~   94 (174)
T cd01895          18 LVNALLGE-ERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYS--VLRTLKAIERADVVLLVIDA   94 (174)
T ss_pred             HHHHHhCc-cceeccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHH--HHHHHHHHhhcCeEEEEEeC
Confidence            57889887 45667778888875532  223 45689999999865422111111111  12223334567999999999


Q ss_pred             CCCCCccHHHHHHHHHHhCCceEEEEeccCCCCc--HHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHH
Q 031293           78 KWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP--IDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSK  155 (162)
Q Consensus        78 ~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~  155 (162)
                      ..+.+.....++..+...+.|+++++||+|+.+.  .......+.+++.+...  ...+++++||+++.|++++++++.+
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~~i~~~~~~l~~  172 (174)
T cd01895          95 TEGITEQDLRIAGLILEEGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFL--DYAPIVFISALTGQGVDKLFDAIDE  172 (174)
T ss_pred             CCCcchhHHHHHHHHHhcCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccc--cCCceEEEeccCCCCHHHHHHHHHH
Confidence            8887776666666666678999999999999865  33444444444433322  2358999999999999999999886


Q ss_pred             h
Q 031293          156 I  156 (162)
Q Consensus       156 ~  156 (162)
                      +
T Consensus       173 ~  173 (174)
T cd01895         173 V  173 (174)
T ss_pred             h
Confidence            5

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.80  E-value=4.2e-18  Score=124.29  Aligned_cols=148  Identities=18%  Similarity=0.216  Sum_probs=98.2

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEE--Ee--CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEee
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFF--KL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLID   76 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~--~~--~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid   76 (162)
                      |+|+|++.  ..+++++|++|+....-  ..  +.++.++|+||+.+.....      ..+...+++..+.++++++|+|
T Consensus       174 Lln~ls~a--~~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~------~gLg~~flrhie~a~vlI~ViD  245 (335)
T PRK12299        174 LISAVSAA--KPKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEG------AGLGHRFLKHIERTRLLLHLVD  245 (335)
T ss_pred             HHHHHHcC--CCccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCcc------ccHHHHHHHHhhhcCEEEEEEc
Confidence            68999987  46789999999977653  33  3469999999985432110      1223344555566799999999


Q ss_pred             cCCCCCccHH-HHHHHHHH-----hCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHH
Q 031293           77 TKWGVKPRDH-ELISLMER-----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLR  150 (162)
Q Consensus        77 ~~~~~~~~~~-~~~~~l~~-----~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~  150 (162)
                      ++..-+..+. .+...+..     .++|+++|+||+|+.+......  +..+......+   .+++++||++++|+++++
T Consensus       246 ~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~--~~~~~~~~~~~---~~i~~iSAktg~GI~eL~  320 (335)
T PRK12299        246 IEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEERE--KRAALELAALG---GPVFLISAVTGEGLDELL  320 (335)
T ss_pred             CCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHH--HHHHHHHHhcC---CCEEEEEcCCCCCHHHHH
Confidence            8754322222 23344433     2689999999999975443221  11222222222   589999999999999999


Q ss_pred             HHHHHhhhhhc
Q 031293          151 TVLSKIARFAK  161 (162)
Q Consensus       151 ~~i~~~~~~~k  161 (162)
                      ++|.+.++.++
T Consensus       321 ~~L~~~l~~~~  331 (335)
T PRK12299        321 RALWELLEEAR  331 (335)
T ss_pred             HHHHHHHHhhh
Confidence            99998876543

>cd00881 GTP_translation_factor GTP translation factor family

Probab=99.80  E-value=1.8e-18  Score=116.89  Aligned_cols=128  Identities=21%  Similarity=0.309  Sum_probs=91.2

Q ss_pred             CCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHH
Q 031293           18 PGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMER   94 (162)
Q Consensus        18 ~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~   94 (162)
                      +|+|....+...   +..+.++||||+             ..+..........+|++++|+|+..+......+++..+..
T Consensus        46 ~~~~~~~~~~~~~~~~~~~~liDtpG~-------------~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~  112 (189)
T cd00881          46 RGITIKSGVATFEWPDRRVNFIDTPGH-------------EDFSSEVIRGLSVSDGAILVVDANEGVQPQTREHLRIARE  112 (189)
T ss_pred             cCCCeecceEEEeeCCEEEEEEeCCCc-------------HHHHHHHHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHH
Confidence            445554433322   446899999998             2222222222345699999999998776666677777776


Q ss_pred             hCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcC-----------CCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293           95 SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANN-----------SLVQPVMMVSSKSGAGIRSLRTVLSKIAR  158 (162)
Q Consensus        95 ~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-----------~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~  158 (162)
                      .++|+++|+||+|+..+.......+.+++.+...+           ....+++++||++|.|+++++.++.+.++
T Consensus       113 ~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~  187 (189)
T cd00881         113 GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHLP  187 (189)
T ss_pred             CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence            78999999999999865555555566666655433           23579999999999999999999987654

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.80  E-value=2.3e-18  Score=126.07  Aligned_cols=141  Identities=22%  Similarity=0.340  Sum_probs=118.9

Q ss_pred             ChhcccCCC-CceeccCCCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEee
Q 031293            1 MLNALTRQW-GVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLID   76 (162)
Q Consensus         1 lin~L~~~~-~~~~~~~~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid   76 (162)
                      |+.+|++.. ...+...+.|+|.|+.++..   +....++|.|||             ++++..++.+...+|.++++++
T Consensus        16 L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh-------------~~~i~~miag~~~~d~alLvV~   82 (447)
T COG3276          16 LLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGH-------------PDFISNLLAGLGGIDYALLVVA   82 (447)
T ss_pred             hhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCc-------------HHHHHHHHhhhcCCceEEEEEe
Confidence            345666653 23457778999999999876   446999999999             9999999999999999999999


Q ss_pred             cCCCCCccHHHHHHHHHHhCCce-EEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHH
Q 031293           77 TKWGVKPRDHELISLMERSQTKY-QVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSK  155 (162)
Q Consensus        77 ~~~~~~~~~~~~~~~l~~~~~~~-ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~  155 (162)
                      +.+++..++.+++..++..+++- ++|+||+|..++...++..+.+.+.+.   ....+++.+|+.+|+|+++|...|.+
T Consensus        83 ~deGl~~qtgEhL~iLdllgi~~giivltk~D~~d~~r~e~~i~~Il~~l~---l~~~~i~~~s~~~g~GI~~Lk~~l~~  159 (447)
T COG3276          83 ADEGLMAQTGEHLLILDLLGIKNGIIVLTKADRVDEARIEQKIKQILADLS---LANAKIFKTSAKTGRGIEELKNELID  159 (447)
T ss_pred             CccCcchhhHHHHHHHHhcCCCceEEEEeccccccHHHHHHHHHHHHhhcc---cccccccccccccCCCHHHHHHHHHH
Confidence            99999999999999999999885 999999999987776666555554444   34468999999999999999999998


Q ss_pred             hh
Q 031293          156 IA  157 (162)
Q Consensus       156 ~~  157 (162)
                      +.
T Consensus       160 L~  161 (447)
T COG3276         160 LL  161 (447)
T ss_pred             hh
Confidence            76

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.79  E-value=4.6e-18  Score=135.18  Aligned_cols=153  Identities=15%  Similarity=0.133  Sum_probs=106.6

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEE--Ee-CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFF--KL-GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT   77 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~--~~-~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~   77 (162)
                      |+|+|++. ....++..||+|++....  .. +.++.++||||+..........+.+.. + ......+.+|++++|+|+
T Consensus       466 Lin~l~~~-~~~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~-~-r~~~~i~~advvilViDa  542 (712)
T PRK09518        466 LLNQLTHE-ERAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSS-L-RTQAAIERSELALFLFDA  542 (712)
T ss_pred             HHHHHhCc-cccccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHH-H-HHHHHhhcCCEEEEEEEC
Confidence            68999998 467789999999876532  22 556899999998443221111222221 1 122334567999999999


Q ss_pred             CCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293           78 KWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  157 (162)
Q Consensus        78 ~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~  157 (162)
                      ..+.+..+..++..+...++|+++|+||+|+.+....+...+.+...+.  .....+++++||++|.|++++++.+.+..
T Consensus       543 t~~~s~~~~~i~~~~~~~~~piIiV~NK~DL~~~~~~~~~~~~~~~~l~--~~~~~~ii~iSAktg~gv~~L~~~i~~~~  620 (712)
T PRK09518        543 SQPISEQDLKVMSMAVDAGRALVLVFNKWDLMDEFRRQRLERLWKTEFD--RVTWARRVNLSAKTGWHTNRLAPAMQEAL  620 (712)
T ss_pred             CCCCCHHHHHHHHHHHHcCCCEEEEEEchhcCChhHHHHHHHHHHHhcc--CCCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            9988888887777777778999999999999864433322223332222  22346889999999999999999998876


Q ss_pred             h
Q 031293          158 R  158 (162)
Q Consensus       158 ~  158 (162)
                      +
T Consensus       621 ~  621 (712)
T PRK09518        621 E  621 (712)
T ss_pred             H
Confidence            5

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=99.79  E-value=3.8e-18  Score=112.24  Aligned_cols=142  Identities=23%  Similarity=0.286  Sum_probs=95.7

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEE--EEe-CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINF--FKL-GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT   77 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~--~~~-~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~   77 (162)
                      |+|+|++.  ...++..||+|.+...  +.. +..+.++||||+........    ...+...++.. ..+|++++|+|+
T Consensus        12 l~~~~~~~--~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~----~~~~~~~~~~~-~~~d~vi~v~d~   84 (158)
T cd01879          12 LFNALTGA--RQKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSE----DEKVARDFLLG-EKPDLIVNVVDA   84 (158)
T ss_pred             HHHHHhcC--cccccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCCh----hHHHHHHHhcC-CCCcEEEEEeeC
Confidence            57889888  3677888998886643  233 45699999999854321110    02234445443 567999999999


Q ss_pred             CCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293           78 KWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  157 (162)
Q Consensus        78 ~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~  157 (162)
                      ...  .....+...+...++|+++|+||+|+.+........+.+.+.   .+   .+++++||.+|.|+++++.++.+..
T Consensus        85 ~~~--~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~---~~---~~~~~iSa~~~~~~~~l~~~l~~~~  156 (158)
T cd01879          85 TNL--ERNLYLTLQLLELGLPVVVALNMIDEAEKRGIKIDLDKLSEL---LG---VPVVPTSARKGEGIDELKDAIAELA  156 (158)
T ss_pred             Ccc--hhHHHHHHHHHHcCCCEEEEEehhhhcccccchhhHHHHHHh---hC---CCeEEEEccCCCCHHHHHHHHHHHh
Confidence            864  223344455566789999999999997654333222222222   22   4899999999999999999998764

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=99.79  E-value=3.6e-18  Score=126.88  Aligned_cols=146  Identities=20%  Similarity=0.208  Sum_probs=97.1

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEe--C--CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEee
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKL--G--TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLID   76 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~--~--~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid   76 (162)
                      |+|+|++.  ..+++++|+||+......+  +  ..+.++||||+.......      ..+...+++....++++++|+|
T Consensus       175 Lln~Lt~~--k~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~------~~Lg~~~l~~i~radvlL~VVD  246 (390)
T PRK12298        175 FIRAVSAA--KPKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEG------AGLGIRFLKHLERCRVLLHLID  246 (390)
T ss_pred             HHHHHhCC--cccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccch------hhHHHHHHHHHHhCCEEEEEec
Confidence            68999998  3589999999997776433  3  359999999985532110      1122334445566799999999


Q ss_pred             cCC----CCCccHHHHHHHHHHh-----CCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHH
Q 031293           77 TKW----GVKPRDHELISLMERS-----QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIR  147 (162)
Q Consensus        77 ~~~----~~~~~~~~~~~~l~~~-----~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~  147 (162)
                      +..    ........+++.+...     ++|+++|+||+|+.......+.++.+.+.   ... ..+++++||+++.|++
T Consensus       247 ~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el~~~l~~l~~~---~~~-~~~Vi~ISA~tg~GId  322 (390)
T PRK12298        247 IAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAKAIVEA---LGW-EGPVYLISAASGLGVK  322 (390)
T ss_pred             cCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHHHHHHHHHHHH---hCC-CCCEEEEECCCCcCHH
Confidence            762    1112223344444432     58999999999998655443333333222   211 1378999999999999


Q ss_pred             HHHHHHHHhhh
Q 031293          148 SLRTVLSKIAR  158 (162)
Q Consensus       148 ~l~~~i~~~~~  158 (162)
                      +++++|.+.++
T Consensus       323 eLl~~I~~~L~  333 (390)
T PRK12298        323 ELCWDLMTFIE  333 (390)
T ss_pred             HHHHHHHHHhh
Confidence            99999988764

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.79  E-value=3.7e-18  Score=129.11  Aligned_cols=143  Identities=20%  Similarity=0.258  Sum_probs=105.7

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT   77 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~   77 (162)
                      |+|+|++. ..+.+++.||+|++......   +.++.++||||++...  ...++.+   ..........+|++++|+|+
T Consensus        15 L~n~l~~~-~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~--~~~~~~~---~~~~~~~~~~ad~vl~vvD~   88 (429)
T TIGR03594        15 LFNRLTGK-RDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDD--DGLDKQI---REQAEIAIEEADVILFVVDG   88 (429)
T ss_pred             HHHHHhCC-CcceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcc--hhHHHHH---HHHHHHHHhhCCEEEEEEeC
Confidence            68999998 46789999999997765433   5679999999985321  1122222   23333344556999999999


Q ss_pred             CCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293           78 KWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  157 (162)
Q Consensus        78 ~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~  157 (162)
                      +.+.+..+.++.+++++.++|+++|+||+|+.+.....      .+ +...  ...+++++||..|.|++++++++.+.+
T Consensus        89 ~~~~~~~d~~i~~~l~~~~~piilVvNK~D~~~~~~~~------~~-~~~l--g~~~~~~vSa~~g~gv~~ll~~i~~~l  159 (429)
T TIGR03594        89 REGLTPEDEEIAKWLRKSGKPVILVANKIDGKKEDAVA------AE-FYSL--GFGEPIPISAEHGRGIGDLLDAILELL  159 (429)
T ss_pred             CCCCCHHHHHHHHHHHHhCCCEEEEEECccCCcccccH------HH-HHhc--CCCCeEEEeCCcCCChHHHHHHHHHhc
Confidence            99988888888899988899999999999987543211      11 1112  224799999999999999999998765


Q ss_pred             h
Q 031293          158 R  158 (162)
Q Consensus       158 ~  158 (162)
                      .
T Consensus       160 ~  160 (429)
T TIGR03594       160 P  160 (429)
T ss_pred             C
Confidence            3

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.78  E-value=9.5e-18  Score=111.44  Aligned_cols=142  Identities=22%  Similarity=0.294  Sum_probs=92.7

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEe------CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEE
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKL------GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLL   74 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~------~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v   74 (162)
                      |+|+|++. . ......+++|++...+..      +..+.++||||+.          .+..+...   ....+|++++|
T Consensus        16 li~~l~~~-~-~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~----------~~~~~~~~---~~~~~d~il~v   80 (168)
T cd01887          16 LLDKIRKT-N-VAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHE----------AFTNMRAR---GASLTDIAILV   80 (168)
T ss_pred             HHHHHHhc-c-cccccCCCeEEeeccEEEecccCCcceEEEEeCCCcH----------HHHHHHHH---HHhhcCEEEEE
Confidence            57888776 2 233455677776654333      3469999999982          11222222   23456999999


Q ss_pred             eecCCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHh---cCCCCCCeEEeecCCCCCHHHHHH
Q 031293           75 IDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKA---NNSLVQPVMMVSSKSGAGIRSLRT  151 (162)
Q Consensus        75 id~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~---~~~~~~~i~~~Sa~~~~g~~~l~~  151 (162)
                      +|+.++........+..+...++|+++|+||+|+..... ......+......   ......+++++||++|.|++++++
T Consensus        81 ~d~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  159 (168)
T cd01887          81 VAADDGVMPQTIEAIKLAKAANVPFIVALNKIDKPNANP-ERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDLLE  159 (168)
T ss_pred             EECCCCccHHHHHHHHHHHHcCCCEEEEEEceecccccH-HHHHHHHHHhhccccccccCcCcEEEeecccCCCHHHHHH
Confidence            999877655566666777777899999999999874321 1111222211110   111236899999999999999999


Q ss_pred             HHHHhhh
Q 031293          152 VLSKIAR  158 (162)
Q Consensus       152 ~i~~~~~  158 (162)
                      +|.+..+
T Consensus       160 ~l~~~~~  166 (168)
T cd01887         160 AILLLAE  166 (168)
T ss_pred             HHHHhhh
Confidence            9987653

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=99.78  E-value=2.1e-18  Score=125.68  Aligned_cols=143  Identities=19%  Similarity=0.230  Sum_probs=94.3

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEE--e-C-CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEee
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFK--L-G-TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLID   76 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~--~-~-~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid   76 (162)
                      |+|+|++.  ..+++++|++|+......  + + .++.++||||+.+.....      ..+...+++....++++++|+|
T Consensus       173 Ll~~lt~~--~~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~------~gLg~~flrhierad~ll~VvD  244 (329)
T TIGR02729       173 LISAVSAA--KPKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEG------AGLGHRFLKHIERTRVLLHLID  244 (329)
T ss_pred             HHHHHhcC--CccccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCccc------ccHHHHHHHHHHhhCEEEEEEc
Confidence            68899988  467899999998666533  3 2 579999999984431110      1223344444556799999999


Q ss_pred             cCCC---CCccH-HHHHHHHHH-----hCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHH
Q 031293           77 TKWG---VKPRD-HELISLMER-----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIR  147 (162)
Q Consensus        77 ~~~~---~~~~~-~~~~~~l~~-----~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~  147 (162)
                      +...   -...+ ..+.+.+..     .++|+++|+||+|+.+.....+..+.+.+   ..+   .+++++||++++|++
T Consensus       245 ~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~~~~~~~~l~~---~~~---~~vi~iSAktg~GI~  318 (329)
T TIGR02729       245 ISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEELAELLKELKK---ALG---KPVFPISALTGEGLD  318 (329)
T ss_pred             CccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHHHHHHHHHHHH---HcC---CcEEEEEccCCcCHH
Confidence            8753   11111 123333332     26899999999999865444333333322   222   489999999999999


Q ss_pred             HHHHHHHHhh
Q 031293          148 SLRTVLSKIA  157 (162)
Q Consensus       148 ~l~~~i~~~~  157 (162)
                      +++++|.+.+
T Consensus       319 eL~~~I~~~l  328 (329)
T TIGR02729       319 ELLYALAELL  328 (329)
T ss_pred             HHHHHHHHHh
Confidence            9999998765

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=99.78  E-value=6.4e-18  Score=126.73  Aligned_cols=115  Identities=23%  Similarity=0.276  Sum_probs=90.2

Q ss_pred             CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCC-CccHHHHHHHHHHhCC-ceEEEEeccCC
Q 031293           31 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV-KPRDHELISLMERSQT-KYQVVLTKTDT  108 (162)
Q Consensus        31 ~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~-~~~~~~~~~~l~~~~~-~~ivv~nK~Dl  108 (162)
                      ..+.++|||||             +.+...++.+...+|++++|+|++++. ..+..+++..+...++ |+++|+||+|+
T Consensus        80 ~~i~liDtPGh-------------~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~gi~~iIVvvNK~Dl  146 (406)
T TIGR03680        80 RRVSFVDAPGH-------------ETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIGIKNIVIVQNKIDL  146 (406)
T ss_pred             cEEEEEECCCH-------------HHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcCCCeEEEEEEcccc
Confidence            46899999999             778888888888899999999999876 6677777777776665 58999999999


Q ss_pred             CCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293          109 VFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR  158 (162)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~  158 (162)
                      .+........+.+.+.+........+++++||++|.|+++|+++|...++
T Consensus       147 ~~~~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~  196 (406)
T TIGR03680       147 VSKEKALENYEEIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIP  196 (406)
T ss_pred             CCHHHHHHHHHHHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence            86554444445555555433223468999999999999999999987543

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>cd01898 Obg Obg subfamily

Probab=99.78  E-value=2.4e-18  Score=114.62  Aligned_cols=143  Identities=20%  Similarity=0.224  Sum_probs=91.7

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEE--Ee-CC-ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEee
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFF--KL-GT-KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLID   76 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~--~~-~~-~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid   76 (162)
                      |+|+|++.  ...++..|++|+.....  .. +. ++.++||||+......      ...+...+++....+|++++|+|
T Consensus        16 l~~~l~~~--~~~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~------~~~~~~~~~~~~~~~d~vi~v~D   87 (170)
T cd01898          16 LLSAISNA--KPKIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASE------GKGLGHRFLRHIERTRLLLHVID   87 (170)
T ss_pred             HHHHHhcC--CccccCCCccccCCcceEEEcCCCCeEEEEecCcccCcccc------cCCchHHHHHHHHhCCEEEEEEe
Confidence            57899887  34678888888755432  22 33 6999999998432110      01223334444456799999999


Q ss_pred             cCCC-CCccH-HHHHHHHHH-----hCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHH
Q 031293           77 TKWG-VKPRD-HELISLMER-----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSL  149 (162)
Q Consensus        77 ~~~~-~~~~~-~~~~~~l~~-----~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l  149 (162)
                      ++.+ -+... ..+.+.+..     .++|+++|+||+|+.+........   .......  ...+++++||+++.|++++
T Consensus        88 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~---~~~~~~~--~~~~~~~~Sa~~~~gi~~l  162 (170)
T cd01898          88 LSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELL---KELLKEL--WGKPVFPISALTGEGLDEL  162 (170)
T ss_pred             cCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhHHHH---HHHHhhC--CCCCEEEEecCCCCCHHHH
Confidence            9865 11111 223344433     258899999999998655543322   2223321  1258999999999999999


Q ss_pred             HHHHHHh
Q 031293          150 RTVLSKI  156 (162)
Q Consensus       150 ~~~i~~~  156 (162)
                      +++|.++
T Consensus       163 ~~~i~~~  169 (170)
T cd01898         163 LRKLAEL  169 (170)
T ss_pred             HHHHHhh
Confidence            9998765

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=99.78  E-value=1e-17  Score=125.28  Aligned_cols=141  Identities=15%  Similarity=0.151  Sum_probs=96.8

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEe----CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEee
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKL----GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLID   76 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~----~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid   76 (162)
                      |+|+|++.  .++++++|++|+.++...+    +..+.++|+||+.....      ....+...+++....++++++|+|
T Consensus       174 LLn~Lt~a--k~kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~------~~~gLg~~fLrhier~~llI~VID  245 (424)
T PRK12297        174 LLSVVSNA--KPKIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGAS------EGVGLGHQFLRHIERTRVIVHVID  245 (424)
T ss_pred             HHHHHHcC--CCccccCCcceeceEEEEEEEeCCceEEEEECCCCccccc------ccchHHHHHHHHHhhCCEEEEEEe
Confidence            68999988  4678999999998876544    45799999999965311      112344556666667899999999


Q ss_pred             cCCC----CCccHHHHHHHHHH-----hCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHH
Q 031293           77 TKWG----VKPRDHELISLMER-----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIR  147 (162)
Q Consensus        77 ~~~~----~~~~~~~~~~~l~~-----~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~  147 (162)
                      ++..    .......+...|..     .++|+++|+||+|+....   +..+.+.+.+   .   .+++++||++++|++
T Consensus       246 ~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~~---e~l~~l~~~l---~---~~i~~iSA~tgeGI~  316 (424)
T PRK12297        246 MSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEAE---ENLEEFKEKL---G---PKVFPISALTGQGLD  316 (424)
T ss_pred             CCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCCH---HHHHHHHHHh---C---CcEEEEeCCCCCCHH
Confidence            8642    11112233444543     368999999999985322   1122332222   2   489999999999999


Q ss_pred             HHHHHHHHhhh
Q 031293          148 SLRTVLSKIAR  158 (162)
Q Consensus       148 ~l~~~i~~~~~  158 (162)
                      +|+++|.+.+.
T Consensus       317 eL~~~L~~~l~  327 (424)
T PRK12297        317 ELLYAVAELLE  327 (424)
T ss_pred             HHHHHHHHHHH
Confidence            99999987664

>PRK12736 elongation factor Tu; Reviewed

Probab=99.77  E-value=2e-17  Score=123.65  Aligned_cols=132  Identities=20%  Similarity=0.238  Sum_probs=102.8

Q ss_pred             ccCCCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHH
Q 031293           14 TSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELIS   90 (162)
Q Consensus        14 ~~~~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~   90 (162)
                      .+..+|+|.+.....+   +.++.++|||||             +.++..++.+...+|++++|+|+.+++..++.+++.
T Consensus        55 ~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh-------------~~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~  121 (394)
T PRK12736         55 EEKERGITINTAHVEYETEKRHYAHVDCPGH-------------ADYVKNMITGAAQMDGAILVVAATDGPMPQTREHIL  121 (394)
T ss_pred             HHHhcCccEEEEeeEecCCCcEEEEEECCCH-------------HHHHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHH
Confidence            3447899988876555   456899999999             788888888888999999999999998888889998


Q ss_pred             HHHHhCCc-eEEEEeccCCCCcHHHH-HHHHHHHHHHHhcCC--CCCCeEEeecCCCC--------CHHHHHHHHHHhhh
Q 031293           91 LMERSQTK-YQVVLTKTDTVFPIDVA-RRAMQIEESLKANNS--LVQPVMMVSSKSGA--------GIRSLRTVLSKIAR  158 (162)
Q Consensus        91 ~l~~~~~~-~ivv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~--~~~~i~~~Sa~~~~--------g~~~l~~~i~~~~~  158 (162)
                      .+...++| +++++||+|+.+..+.. ...+.+++.+...+.  ...+++++||++|.        ++++|++.+.+.++
T Consensus       122 ~~~~~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp  201 (394)
T PRK12736        122 LARQVGVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP  201 (394)
T ss_pred             HHHHcCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence            88888999 67899999998544332 233466666654432  23689999999983        67888888877553

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=99.77  E-value=9.8e-18  Score=126.95  Aligned_cols=144  Identities=22%  Similarity=0.239  Sum_probs=95.7

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT   77 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~   77 (162)
                      |||+|++.  ..+++++|++|+.++...+   +.++.++||||+..... .     ...+-..+++....++++++|+|+
T Consensus       175 Lln~Ls~a--kpkIadypfTTl~P~lGvv~~~~~~f~laDtPGliegas-~-----g~gLg~~fLrhieradvLv~VVD~  246 (500)
T PRK12296        175 LISALSAA--KPKIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGAS-E-----GKGLGLDFLRHIERCAVLVHVVDC  246 (500)
T ss_pred             HHHHHhcC--CccccccCcccccceEEEEEECCeEEEEEECCCCccccc-h-----hhHHHHHHHHHHHhcCEEEEEECC
Confidence            68999988  4678999999998776433   44699999999843211 0     012233445555677999999998


Q ss_pred             CCC------CCccHHHHHHHH--------------HHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEE
Q 031293           78 KWG------VKPRDHELISLM--------------ERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMM  137 (162)
Q Consensus        78 ~~~------~~~~~~~~~~~l--------------~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  137 (162)
                      ...      +.... .+...|              ...++|.++|+||+|+.+.....   +.+.+.+...+   +++++
T Consensus       247 s~~e~~rdp~~d~~-~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~---e~l~~~l~~~g---~~Vf~  319 (500)
T PRK12296        247 ATLEPGRDPLSDID-ALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELA---EFVRPELEARG---WPVFE  319 (500)
T ss_pred             cccccccCchhhHH-HHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHH---HHHHHHHHHcC---CeEEE
Confidence            641      11111 111222              12368999999999997443322   22333333332   58999


Q ss_pred             eecCCCCCHHHHHHHHHHhhhh
Q 031293          138 VSSKSGAGIRSLRTVLSKIARF  159 (162)
Q Consensus       138 ~Sa~~~~g~~~l~~~i~~~~~~  159 (162)
                      +||+++.|+++|+.+|.+.++.
T Consensus       320 ISA~tgeGLdEL~~~L~ell~~  341 (500)
T PRK12296        320 VSAASREGLRELSFALAELVEE  341 (500)
T ss_pred             EECCCCCCHHHHHHHHHHHHHh
Confidence            9999999999999999887753

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=99.77  E-value=5.3e-18  Score=128.01  Aligned_cols=121  Identities=21%  Similarity=0.256  Sum_probs=91.9

Q ss_pred             cCCCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCC--CCCccHHHHH
Q 031293           15 SDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW--GVKPRDHELI   89 (162)
Q Consensus        15 ~~~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~--~~~~~~~~~~   89 (162)
                      +..+|+|++..+..+   +.++.++||||+             +.+.+.+..+...+|++++|+|+.+  ++...+.+++
T Consensus        65 Er~rG~T~d~~~~~~~~~~~~i~liDtpG~-------------~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~  131 (425)
T PRK12317         65 ERERGVTIDLAHKKFETDKYYFTIVDCPGH-------------RDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHV  131 (425)
T ss_pred             HhhcCccceeeeEEEecCCeEEEEEECCCc-------------ccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHH
Confidence            347999999887655   556999999999             6666677777778999999999998  7777777777


Q ss_pred             HHHHHhCC-ceEEEEeccCCCCc--HHHHHHHHHHHHHHHhcCCC--CCCeEEeecCCCCCHHH
Q 031293           90 SLMERSQT-KYQVVLTKTDTVFP--IDVARRAMQIEESLKANNSL--VQPVMMVSSKSGAGIRS  148 (162)
Q Consensus        90 ~~l~~~~~-~~ivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~--~~~i~~~Sa~~~~g~~~  148 (162)
                      ..+...++ |+++++||+|+.+.  .......+.+++.+...+..  ..+++++||++|.|+++
T Consensus       132 ~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~  195 (425)
T PRK12317        132 FLARTLGINQLIVAINKMDAVNYDEKRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVK  195 (425)
T ss_pred             HHHHHcCCCeEEEEEEccccccccHHHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccc
Confidence            77777776 58999999999752  22334445565555544321  35899999999999986

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=99.77  E-value=1.3e-17  Score=115.55  Aligned_cols=121  Identities=17%  Similarity=0.242  Sum_probs=88.1

Q ss_pred             ccCCCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCC-------CCc
Q 031293           14 TSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG-------VKP   83 (162)
Q Consensus        14 ~~~~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~-------~~~   83 (162)
                      .+..+|+|++.....+   +.++.++||||+             ..+...++.+...+|++++|+|+..+       ...
T Consensus        57 ~E~~rg~T~d~~~~~~~~~~~~i~liDtpG~-------------~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~  123 (219)
T cd01883          57 EERERGVTIDVGLAKFETEKYRFTILDAPGH-------------RDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGG  123 (219)
T ss_pred             HHhhCccCeecceEEEeeCCeEEEEEECCCh-------------HHHHHHHHHHhhhCCEEEEEEECCCCcccccccccc
Confidence            4557889988776555   567999999999             66667777777788999999999873       334


Q ss_pred             cHHHHHHHHHHhC-CceEEEEeccCCCC----cHHHHHHHHHHHHHHHhcCC--CCCCeEEeecCCCCCHH
Q 031293           84 RDHELISLMERSQ-TKYQVVLTKTDTVF----PIDVARRAMQIEESLKANNS--LVQPVMMVSSKSGAGIR  147 (162)
Q Consensus        84 ~~~~~~~~l~~~~-~~~ivv~nK~Dl~~----~~~~~~~~~~~~~~~~~~~~--~~~~i~~~Sa~~~~g~~  147 (162)
                      ...+.+..+...+ .|+++++||+|+..    +.......+.++..+...+.  ..++++++||++|.|++
T Consensus       124 ~~~~~~~~~~~~~~~~iiivvNK~Dl~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~  194 (219)
T cd01883         124 QTREHALLARTLGVKQLIVAVNKMDDVTVNWSEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI  194 (219)
T ss_pred             chHHHHHHHHHcCCCeEEEEEEccccccccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence            4555555555556 57899999999973    33345555666655655432  23689999999999986

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=99.77  E-value=1.3e-17  Score=125.05  Aligned_cols=115  Identities=21%  Similarity=0.247  Sum_probs=89.9

Q ss_pred             CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCC-CccHHHHHHHHHHhCC-ceEEEEeccCC
Q 031293           31 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV-KPRDHELISLMERSQT-KYQVVLTKTDT  108 (162)
Q Consensus        31 ~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~-~~~~~~~~~~l~~~~~-~~ivv~nK~Dl  108 (162)
                      .++.++||||+             ..++..++.+...+|++++|+|++++. ...+.+.+..+...++ |+++|+||+|+
T Consensus        85 ~~i~liDtPG~-------------~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~i~~iiVVlNK~Dl  151 (411)
T PRK04000         85 RRVSFVDAPGH-------------ETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIGIKNIVIVQNKIDL  151 (411)
T ss_pred             cEEEEEECCCH-------------HHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEEeecc
Confidence            46899999999             778889999888999999999999876 5666677777766665 58999999999


Q ss_pred             CCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293          109 VFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR  158 (162)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~  158 (162)
                      .++.......+.+.+.+........+++++||++|.|+++|+++|.+.++
T Consensus       152 ~~~~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~  201 (411)
T PRK04000        152 VSKERALENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIP  201 (411)
T ss_pred             ccchhHHHHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCC
Confidence            87555444445555555433223468999999999999999999987543

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.77  E-value=3.7e-17  Score=124.80  Aligned_cols=143  Identities=16%  Similarity=0.189  Sum_probs=100.7

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT   77 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~   77 (162)
                      |+|+|++. ..+.++..||+|++......   +..+.++||||+....  ....+.+......   ....+|++++|+|+
T Consensus        54 L~nrl~~~-~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~--~~~~~~~~~~~~~---~~~~aD~il~VvD~  127 (472)
T PRK03003         54 LVNRILGR-REAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDA--KGLQASVAEQAEV---AMRTADAVLFVVDA  127 (472)
T ss_pred             HHHHHhCc-CcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcc--hhHHHHHHHHHHH---HHHhCCEEEEEEEC
Confidence            68999988 46778999999998776543   5569999999984221  1111222222222   33456999999999


Q ss_pred             CCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293           78 KWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  157 (162)
Q Consensus        78 ~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~  157 (162)
                      +.+.+..+..+...+...++|+++|+||+|+.....  .    ..+... .+.  ..++++||++|.|+++++++|.+.+
T Consensus       128 ~~~~s~~~~~i~~~l~~~~~piilV~NK~Dl~~~~~--~----~~~~~~-~g~--~~~~~iSA~~g~gi~eL~~~i~~~l  198 (472)
T PRK03003        128 TVGATATDEAVARVLRRSGKPVILAANKVDDERGEA--D----AAALWS-LGL--GEPHPVSALHGRGVGDLLDAVLAAL  198 (472)
T ss_pred             CCCCCHHHHHHHHHHHHcCCCEEEEEECccCCccch--h----hHHHHh-cCC--CCeEEEEcCCCCCcHHHHHHHHhhc
Confidence            988777777788888888899999999999864221  1    111111 121  2457999999999999999998765


Q ss_pred             h
Q 031293          158 R  158 (162)
Q Consensus       158 ~  158 (162)
                      .
T Consensus       199 ~  199 (472)
T PRK03003        199 P  199 (472)
T ss_pred             c
Confidence            3

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.76  E-value=2.8e-17  Score=130.79  Aligned_cols=143  Identities=17%  Similarity=0.227  Sum_probs=103.3

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT   77 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~   77 (162)
                      |+|+|++. ..+.+++.||+|++......   +..+.+|||||+.....  ...   ..+..........+|++++|+|+
T Consensus       291 L~n~l~~~-~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~--~~~---~~~~~~~~~~~~~aD~iL~VvDa  364 (712)
T PRK09518        291 LVNRILGR-REAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVE--GID---SAIASQAQIAVSLADAVVFVVDG  364 (712)
T ss_pred             HHHHHhCC-CceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCc--cHH---HHHHHHHHHHHHhCCEEEEEEEC
Confidence            68999998 46789999999998776543   45699999999853211  111   12233333334567999999999


Q ss_pred             CCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293           78 KWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  157 (162)
Q Consensus        78 ~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~  157 (162)
                      +.++...+.++...++..++|+++|+||+|+......      ..+... .+.  ..++++||++|.|+++++++|.+.+
T Consensus       365 ~~~~~~~d~~i~~~Lr~~~~pvIlV~NK~D~~~~~~~------~~~~~~-lg~--~~~~~iSA~~g~GI~eLl~~i~~~l  435 (712)
T PRK09518        365 QVGLTSTDERIVRMLRRAGKPVVLAVNKIDDQASEYD------AAEFWK-LGL--GEPYPISAMHGRGVGDLLDEALDSL  435 (712)
T ss_pred             CCCCCHHHHHHHHHHHhcCCCEEEEEECcccccchhh------HHHHHH-cCC--CCeEEEECCCCCCchHHHHHHHHhc
Confidence            9888888888888888889999999999998643211      111111 121  3568999999999999999998765


Q ss_pred             h
Q 031293          158 R  158 (162)
Q Consensus       158 ~  158 (162)
                      .
T Consensus       436 ~  436 (712)
T PRK09518        436 K  436 (712)
T ss_pred             c
Confidence            3

>KOG2486 consensus Predicted GTPase [General function prediction only]

Probab=99.76  E-value=1.1e-18  Score=120.84  Aligned_cols=158  Identities=29%  Similarity=0.406  Sum_probs=126.2

Q ss_pred             ChhcccCCCCceeccC-CCCcceEEEEEEeCCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCC
Q 031293            1 MLNALTRQWGVVRTSD-KPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW   79 (162)
Q Consensus         1 lin~L~~~~~~~~~~~-~~g~t~~~~~~~~~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~   79 (162)
                      |+|.++.....+..+. ++|.|+.++++..+..|+++|.||+|....+......|..+.+.|+.+.++.-.+++++|+..
T Consensus       152 Lln~~~r~k~~~~t~k~K~g~Tq~in~f~v~~~~~~vDlPG~~~a~y~~~~~~d~~~~t~~Y~leR~nLv~~FLLvd~sv  231 (320)
T KOG2486|consen  152 LLNDLVRVKNIADTSKSKNGKTQAINHFHVGKSWYEVDLPGYGRAGYGFELPADWDKFTKSYLLERENLVRVFLLVDASV  231 (320)
T ss_pred             HHhhhhhhhhhhhhcCCCCccceeeeeeeccceEEEEecCCcccccCCccCcchHhHhHHHHHHhhhhhheeeeeeeccC
Confidence            5788888866676666 999999999999999999999999988866666667788999999999999899999999999


Q ss_pred             CCCccHHHHHHHHHHhCCceEEEEeccCCCCcHH------HHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHH
Q 031293           80 GVKPRDHELISLMERSQTKYQVVLTKTDTVFPID------VARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVL  153 (162)
Q Consensus        80 ~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~------~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i  153 (162)
                      ++...|....+++.+.++|+.+|+||+|......      ...+...+............|-+.+|+.++.|.+.|+-.|
T Consensus       232 ~i~~~D~~~i~~~ge~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i  311 (320)
T KOG2486|consen  232 PIQPTDNPEIAWLGENNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIRGVFLVDLPWIYVSSVTSLGRDLLLLHI  311 (320)
T ss_pred             CCCCCChHHHHHHhhcCCCeEEeeehhhhhhhccccccCccccceeehhhccccceeccCCceeeecccccCceeeeeeh
Confidence            9999999999999999999999999999752221      1122222333333333334566789999999999999888


Q ss_pred             HHhhh
Q 031293          154 SKIAR  158 (162)
Q Consensus       154 ~~~~~  158 (162)
                      .+...
T Consensus       312 ~q~~~  316 (320)
T KOG2486|consen  312 AQLRG  316 (320)
T ss_pred             hhhhc
Confidence            76543

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=99.76  E-value=3.1e-17  Score=122.99  Aligned_cols=122  Identities=15%  Similarity=0.139  Sum_probs=93.4

Q ss_pred             ccCCCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHH
Q 031293           14 TSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELIS   90 (162)
Q Consensus        14 ~~~~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~   90 (162)
                      .+...|.|.+..+..+   +.++.++|||||             +++...+..+...+|++++|+|+.+++..++.+++.
T Consensus        60 eE~~rgiTid~~~~~~~~~~~~~~liDtPGh-------------~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~  126 (406)
T TIGR02034        60 AEREQGITIDVAYRYFSTDKRKFIVADTPGH-------------EQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSY  126 (406)
T ss_pred             HHhcCCcCeEeeeEEEccCCeEEEEEeCCCH-------------HHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHH
Confidence            4456788888776544   457999999999             777888888888999999999999999888888888


Q ss_pred             HHHHhCCc-eEEEEeccCCCCcH--HHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHH
Q 031293           91 LMERSQTK-YQVVLTKTDTVFPI--DVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRS  148 (162)
Q Consensus        91 ~l~~~~~~-~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~  148 (162)
                      .+...++| +++++||+|+.+..  ......+.+.+.+...+....+++++||++|.|+++
T Consensus       127 ~~~~~~~~~iivviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~  187 (406)
T TIGR02034       127 IASLLGIRHVVLAVNKMDLVDYDEEVFENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS  187 (406)
T ss_pred             HHHHcCCCcEEEEEEecccccchHHHHHHHHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence            77777765 78899999997422  233344455444444443346899999999999885

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=99.75  E-value=1.1e-17  Score=128.27  Aligned_cols=142  Identities=21%  Similarity=0.274  Sum_probs=104.6

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEe---CCceEEEcCCCCcccc-cCHHHHHHHHHHHHHHHhcCcccceeEEEee
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAY-AKEEVKDAWEELVKEYVSTRVSLKRVCLLID   76 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid   76 (162)
                      |||+|||.  ..+|++.||+|.+.....+   +.++.++|.||..... .+.+     +...++|+.+. .+|+++.|+|
T Consensus        19 lFN~LTG~--~q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~D-----E~Var~~ll~~-~~D~ivnVvD   90 (653)
T COG0370          19 LFNALTGA--NQKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSED-----EKVARDFLLEG-KPDLIVNVVD   90 (653)
T ss_pred             HHHHHhcc--CceecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCch-----HHHHHHHHhcC-CCCEEEEEcc
Confidence            68999999  6899999999998776444   5569999999974442 2221     44566666533 4599999999


Q ss_pred             cCCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHh
Q 031293           77 TKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKI  156 (162)
Q Consensus        77 ~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~  156 (162)
                      |..-  .....+.-.+.+.++|+++++|++|...+....--.+.+++.++      .|++++||++|.|++++++++.+.
T Consensus        91 AtnL--eRnLyltlQLlE~g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~LG------vPVv~tvA~~g~G~~~l~~~i~~~  162 (653)
T COG0370          91 ATNL--ERNLYLTLQLLELGIPMILALNMIDEAKKRGIRIDIEKLSKLLG------VPVVPTVAKRGEGLEELKRAIIEL  162 (653)
T ss_pred             cchH--HHHHHHHHHHHHcCCCeEEEeccHhhHHhcCCcccHHHHHHHhC------CCEEEEEeecCCCHHHHHHHHHHh
Confidence            9752  23344445566789999999999998754444333345555554      699999999999999999999865


Q ss_pred             hh
Q 031293          157 AR  158 (162)
Q Consensus       157 ~~  158 (162)
                      .+
T Consensus       163 ~~  164 (653)
T COG0370         163 AE  164 (653)
T ss_pred             cc
Confidence            43

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.75  E-value=3.3e-17  Score=108.92  Aligned_cols=144  Identities=19%  Similarity=0.170  Sum_probs=89.6

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT   77 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~   77 (162)
                      |+|+|++..  ..+++.|++|........   +.++.++||||+.......  +..+......++.  ...|++++|+|+
T Consensus        16 li~~l~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~--~~~~~~~~~~~~~--~~~d~~l~v~d~   89 (168)
T cd01897          16 LVNKLTRAK--PEVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEE--RNTIEMQAITALA--HLRAAVLFLFDP   89 (168)
T ss_pred             HHHHHhcCC--CccCCCCCcccceeEEEEccCceEEEEEECCCcCCccccC--CchHHHHHHHHHH--hccCcEEEEEeC
Confidence            578888873  346677888876664333   3469999999984321110  0111111111111  124889999999


Q ss_pred             CCCCC---ccHHHHHHHHHHh--CCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHH
Q 031293           78 KWGVK---PRDHELISLMERS--QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTV  152 (162)
Q Consensus        78 ~~~~~---~~~~~~~~~l~~~--~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~  152 (162)
                      .....   .....++..+...  ++|+++|+||+|+........    .++....   ...+++++||++|.|+++++++
T Consensus        90 ~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~----~~~~~~~---~~~~~~~~Sa~~~~gi~~l~~~  162 (168)
T cd01897          90 SETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLTFEDLSE----IEEEEEL---EGEEVLKISTLTEEGVDEVKNK  162 (168)
T ss_pred             CcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccCchhhHHH----HHHhhhh---ccCceEEEEecccCCHHHHHHH
Confidence            76432   1122345555544  789999999999976554432    2222221   2358999999999999999999


Q ss_pred             HHHhh
Q 031293          153 LSKIA  157 (162)
Q Consensus       153 i~~~~  157 (162)
                      +.+.+
T Consensus       163 l~~~~  167 (168)
T cd01897         163 ACELL  167 (168)
T ss_pred             HHHHh
Confidence            98754

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=99.75  E-value=5.5e-17  Score=106.39  Aligned_cols=137  Identities=24%  Similarity=0.306  Sum_probs=94.2

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT   77 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~   77 (162)
                      |+|+|++. ..+.++..|++|.+......   +.++.++||||++...... ...    ...........+|++++++|+
T Consensus        17 li~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~-~~~----~~~~~~~~~~~~~~~v~v~d~   90 (157)
T cd04164          17 LLNALAGR-DRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEI-EKI----GIERAREAIEEADLVLFVIDA   90 (157)
T ss_pred             HHHHHHCC-ceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchH-HHH----HHHHHHHHHhhCCEEEEEEEC
Confidence            57889888 56778889999987654322   4468999999986543211 111    122222333467999999999


Q ss_pred             CCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293           78 KWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  157 (162)
Q Consensus        78 ~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~  157 (162)
                      ..+.+..+...+..  ..+.|+++|+||+|+.+....         .   ......+++++||+++.|+++++++|.+.+
T Consensus        91 ~~~~~~~~~~~~~~--~~~~~vi~v~nK~D~~~~~~~---------~---~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~  156 (157)
T cd04164          91 SRGLDEEDLEILEL--PADKPIIVVLNKSDLLPDSEL---------L---SLLAGKPIIAISAKTGEGLDELKEALLELA  156 (157)
T ss_pred             CCCCCHHHHHHHHh--hcCCCEEEEEEchhcCCcccc---------c---cccCCCceEEEECCCCCCHHHHHHHHHHhh
Confidence            97655544444333  457899999999999854432         1   111235899999999999999999998764

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>PRK12735 elongation factor Tu; Reviewed

Probab=99.75  E-value=4.5e-17  Score=121.80  Aligned_cols=131  Identities=21%  Similarity=0.263  Sum_probs=100.4

Q ss_pred             ccCCCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHH
Q 031293           14 TSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELIS   90 (162)
Q Consensus        14 ~~~~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~   90 (162)
                      .+..+|+|.+.....+   +.++.++|||||             +.++..+..+...+|++++|+|+.+++..++.+++.
T Consensus        55 ~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh-------------~~f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~  121 (396)
T PRK12735         55 EEKARGITINTSHVEYETANRHYAHVDCPGH-------------ADYVKNMITGAAQMDGAILVVSAADGPMPQTREHIL  121 (396)
T ss_pred             hHHhcCceEEEeeeEEcCCCcEEEEEECCCH-------------HHHHHHHHhhhccCCEEEEEEECCCCCchhHHHHHH
Confidence            3447888888765544   446999999999             788888888888999999999999888888888888


Q ss_pred             HHHHhCCceE-EEEeccCCCCcHH-HHHHHHHHHHHHHhcCC--CCCCeEEeecCCCC----------CHHHHHHHHHHh
Q 031293           91 LMERSQTKYQ-VVLTKTDTVFPID-VARRAMQIEESLKANNS--LVQPVMMVSSKSGA----------GIRSLRTVLSKI  156 (162)
Q Consensus        91 ~l~~~~~~~i-vv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~--~~~~i~~~Sa~~~~----------g~~~l~~~i~~~  156 (162)
                      .+...++|.+ +++||+|+.+..+ .+...+.+++.+...+.  ...+++++||.+|.          ++..|++.|.+.
T Consensus       122 ~~~~~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~  201 (396)
T PRK12735        122 LARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSY  201 (396)
T ss_pred             HHHHcCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhc
Confidence            8888889965 6799999985433 23333456666655432  23689999999983          788888888875


Q ss_pred             h
Q 031293          157 A  157 (162)
Q Consensus       157 ~  157 (162)
                      +
T Consensus       202 ~  202 (396)
T PRK12735        202 I  202 (396)
T ss_pred             C
Confidence            4

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.75  E-value=3.3e-17  Score=120.46  Aligned_cols=138  Identities=19%  Similarity=0.216  Sum_probs=91.3

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEe----CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEee
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKL----GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLID   76 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~----~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid   76 (162)
                      |+|+|++. . ..+++.|++|++.....+    +..+.++||||+-.. .+....+.+    +..+.....+|++++|+|
T Consensus       205 Lln~L~~~-~-~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~-l~~~lie~f----~~tle~~~~ADlil~VvD  277 (351)
T TIGR03156       205 LFNALTGA-D-VYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRD-LPHELVAAF----RATLEEVREADLLLHVVD  277 (351)
T ss_pred             HHHHHhCC-c-eeeccCCccccCCEEEEEEeCCCceEEEEecCccccc-CCHHHHHHH----HHHHHHHHhCCEEEEEEE
Confidence            68999998 3 678889999987765322    457999999998221 112222223    233334456799999999


Q ss_pred             cCCCCCccHHH-HHHHHHH---hCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHH
Q 031293           77 TKWGVKPRDHE-LISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTV  152 (162)
Q Consensus        77 ~~~~~~~~~~~-~~~~l~~---~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~  152 (162)
                      ++.+....... +...+..   .++|+++|+||+|+.+.....    ..   .. .   ..+++++||++|.|+++|+++
T Consensus       278 ~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~~v~----~~---~~-~---~~~~i~iSAktg~GI~eL~~~  346 (351)
T TIGR03156       278 ASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEPRIE----RL---EE-G---YPEAVFVSAKTGEGLDLLLEA  346 (351)
T ss_pred             CCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChHhHH----HH---Hh-C---CCCEEEEEccCCCCHHHHHHH
Confidence            98765433321 2233333   368999999999997543221    11   11 1   136899999999999999999


Q ss_pred             HHHh
Q 031293          153 LSKI  156 (162)
Q Consensus       153 i~~~  156 (162)
                      |.+.
T Consensus       347 I~~~  350 (351)
T TIGR03156       347 IAER  350 (351)
T ss_pred             HHhh
Confidence            8764

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=99.75  E-value=5.6e-17  Score=111.64  Aligned_cols=121  Identities=17%  Similarity=0.168  Sum_probs=86.1

Q ss_pred             cCCCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHH
Q 031293           15 SDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISL   91 (162)
Q Consensus        15 ~~~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~   91 (162)
                      +..+|+|++......   +.++.++||||+             ..+...+......+|++++|+|+..+....+..+...
T Consensus        58 e~~rg~T~~~~~~~~~~~~~~~~liDTpG~-------------~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~  124 (208)
T cd04166          58 EREQGITIDVAYRYFSTPKRKFIIADTPGH-------------EQYTRNMVTGASTADLAILLVDARKGVLEQTRRHSYI  124 (208)
T ss_pred             hhcCCcCeecceeEEecCCceEEEEECCcH-------------HHHHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHH
Confidence            445888887765433   557999999999             4555555556677899999999998876666666666


Q ss_pred             HHHhCCc-eEEEEeccCCCCc--HHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHH
Q 031293           92 MERSQTK-YQVVLTKTDTVFP--IDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRS  148 (162)
Q Consensus        92 l~~~~~~-~ivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~  148 (162)
                      +...+.| +++|+||+|+...  .........+++.+...+....+++++||++|.|+++
T Consensus       125 ~~~~~~~~iIvviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~  184 (208)
T cd04166         125 LSLLGIRHVVVAVNKMDLVDYSEEVFEEIVADYLAFAAKLGIEDITFIPISALDGDNVVS  184 (208)
T ss_pred             HHHcCCCcEEEEEEchhcccCCHHHHHHHHHHHHHHHHHcCCCCceEEEEeCCCCCCCcc
Confidence            6666655 6779999999742  2233444555555555543345799999999999875

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=99.75  E-value=2.4e-17  Score=117.72  Aligned_cols=120  Identities=15%  Similarity=0.139  Sum_probs=102.7

Q ss_pred             cCCCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHH
Q 031293           15 SDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISL   91 (162)
Q Consensus        15 ~~~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~   91 (162)
                      +...|+|.++-+..+   +++|.+.|||||             +++.+++..+.+-||.+++++|++.++..++..+.-.
T Consensus        67 EREQGITIDVAYRyFsT~KRkFIiADTPGH-------------eQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I  133 (431)
T COG2895          67 EREQGITIDVAYRYFSTEKRKFIIADTPGH-------------EQYTRNMATGASTADLAILLVDARKGVLEQTRRHSFI  133 (431)
T ss_pred             HHhcCceEEEEeeecccccceEEEecCCcH-------------HHHhhhhhcccccccEEEEEEecchhhHHHhHHHHHH
Confidence            445788888886433   678999999999             9999999999999999999999999998888888777


Q ss_pred             HHHhCCc-eEEEEeccCCCC--cHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHH
Q 031293           92 MERSQTK-YQVVLTKTDTVF--PIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIR  147 (162)
Q Consensus        92 l~~~~~~-~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~  147 (162)
                      ....+++ +++++|||||++  +...+++..++..+....+.....++|+||+.|.|+-
T Consensus       134 ~sLLGIrhvvvAVNKmDLvdy~e~~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~  192 (431)
T COG2895         134 ASLLGIRHVVVAVNKMDLVDYSEEVFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVV  192 (431)
T ss_pred             HHHhCCcEEEEEEeeecccccCHHHHHHHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence            7777887 799999999994  5557788888888888888777899999999998865

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.74  E-value=3.8e-17  Score=123.86  Aligned_cols=140  Identities=19%  Similarity=0.267  Sum_probs=101.1

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT   77 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~   77 (162)
                      |+|+|++. ..+.++..||+|++......   +..+.++||||+....  ....   ..+...+......+|++++|+|+
T Consensus        17 L~n~l~~~-~~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~--~~~~---~~~~~~~~~~~~~ad~il~vvd~   90 (435)
T PRK00093         17 LFNRLTGK-RDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDD--DGFE---KQIREQAELAIEEADVILFVVDG   90 (435)
T ss_pred             HHHHHhCC-CceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcc--hhHH---HHHHHHHHHHHHhCCEEEEEEEC
Confidence            68999998 46778999999987765433   5679999999995421  1111   22222233334567999999999


Q ss_pred             CCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHH
Q 031293           78 KWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSK  155 (162)
Q Consensus        78 ~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~  155 (162)
                      +.+.+..+.++..++...++|+++|+||+|+.+...      ...+... .+  ..+++++||.+|.|++++++++.+
T Consensus        91 ~~~~~~~~~~~~~~l~~~~~piilv~NK~D~~~~~~------~~~~~~~-lg--~~~~~~iSa~~g~gv~~l~~~I~~  159 (435)
T PRK00093         91 RAGLTPADEEIAKILRKSNKPVILVVNKVDGPDEEA------DAYEFYS-LG--LGEPYPISAEHGRGIGDLLDAILE  159 (435)
T ss_pred             CCCCCHHHHHHHHHHHHcCCcEEEEEECccCccchh------hHHHHHh-cC--CCCCEEEEeeCCCCHHHHHHHHHh
Confidence            998888888888888888999999999999754221      1111111 22  235899999999999999999976

>cd04163 Era Era subfamily

Probab=99.74  E-value=1.3e-16  Score=105.31  Aligned_cols=145  Identities=23%  Similarity=0.260  Sum_probs=97.5

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT   77 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~   77 (162)
                      |+|+|++. ..+..++.+++++.......   +..+.++||||++.....  ..+.   +...+......+|.+++++|+
T Consensus        19 l~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~--~~~~---~~~~~~~~~~~~d~i~~v~d~   92 (168)
T cd04163          19 LLNALVGQ-KISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKK--LGER---MVKAAWSALKDVDLVLFVVDA   92 (168)
T ss_pred             HHHHHhCC-ceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHH--HHHH---HHHHHHHHHHhCCEEEEEEEC
Confidence            57888888 56667777777664443222   346899999998543211  1111   222223334556999999999


Q ss_pred             CCCCCccHHHHHHHHHHhCCceEEEEeccCCCC-cHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHh
Q 031293           78 KWGVKPRDHELISLMERSQTKYQVVLTKTDTVF-PIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKI  156 (162)
Q Consensus        78 ~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~  156 (162)
                      ..+.......+.+.+...+.|+++|+||+|+.. ........+.+..   ..  ...+++++|++++.|+++++.+|.+.
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~---~~--~~~~~~~~s~~~~~~~~~l~~~l~~~  167 (168)
T cd04163          93 SEPIGEGDEFILELLKKSKTPVILVLNKIDLVKDKEDLLPLLEKLKE---LG--PFAEIFPISALKGENVDELLEEIVKY  167 (168)
T ss_pred             CCccCchHHHHHHHHHHhCCCEEEEEEchhccccHHHHHHHHHHHHh---cc--CCCceEEEEeccCCChHHHHHHHHhh
Confidence            987666666777777777899999999999973 3333333333222   11  13589999999999999999999865

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=99.74  E-value=3.9e-17  Score=126.72  Aligned_cols=139  Identities=21%  Similarity=0.267  Sum_probs=96.9

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEe---CC-ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEee
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKL---GT-KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLID   76 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~---~~-~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid   76 (162)
                      |+|+|.+. ..+ ....+|+|+++..+.+   +. ++.++|||||             ..+.....++...+|++++|+|
T Consensus       103 Ll~~l~~~-~v~-~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGh-------------e~F~~~r~rga~~aDiaILVVd  167 (587)
T TIGR00487       103 LLDSIRKT-KVA-QGEAGGITQHIGAYHVENEDGKMITFLDTPGH-------------EAFTSMRARGAKVTDIVVLVVA  167 (587)
T ss_pred             HHHHHHhC-Ccc-cccCCceeecceEEEEEECCCcEEEEEECCCC-------------cchhhHHHhhhccCCEEEEEEE
Confidence            56777766 333 3456788888776543   33 6999999999             4443344455677899999999


Q ss_pred             cCCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHH--HHhcCCCCCCeEEeecCCCCCHHHHHHHHH
Q 031293           77 TKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEES--LKANNSLVQPVMMVSSKSGAGIRSLRTVLS  154 (162)
Q Consensus        77 ~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~  154 (162)
                      +.++...++.+.+..+...++|+++++||+|+.+.. .+...+.+.+.  ....+....+++++||++|.|+++++++|.
T Consensus       168 a~dgv~~qT~e~i~~~~~~~vPiIVviNKiDl~~~~-~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGeGI~eLl~~I~  246 (587)
T TIGR00487       168 ADDGVMPQTIEAISHAKAANVPIIVAINKIDKPEAN-PDRVKQELSEYGLVPEDWGGDTIFVPVSALTGDGIDELLDMIL  246 (587)
T ss_pred             CCCCCCHhHHHHHHHHHHcCCCEEEEEECcccccCC-HHHHHHHHHHhhhhHHhcCCCceEEEEECCCCCChHHHHHhhh
Confidence            998888888888887777899999999999986422 12222222211  111111225799999999999999999986


Q ss_pred             H
Q 031293          155 K  155 (162)
Q Consensus       155 ~  155 (162)
                      .
T Consensus       247 ~  247 (587)
T TIGR00487       247 L  247 (587)
T ss_pred             h
Confidence            4

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>PLN03127 Elongation factor Tu; Provisional

Probab=99.74  E-value=8.6e-17  Score=121.54  Aligned_cols=131  Identities=21%  Similarity=0.258  Sum_probs=98.7

Q ss_pred             ccCCCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHH
Q 031293           14 TSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELIS   90 (162)
Q Consensus        14 ~~~~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~   90 (162)
                      .+..+|+|.+.....+   +.++.++|||||             .+++..+..+...+|++++|+|+.+++..++.+++.
T Consensus       104 ~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh-------------~~f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~  170 (447)
T PLN03127        104 EEKARGITIATAHVEYETAKRHYAHVDCPGH-------------ADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHIL  170 (447)
T ss_pred             hHhhcCceeeeeEEEEcCCCeEEEEEECCCc-------------cchHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHH
Confidence            4556999998876655   446999999999             667888888878899999999999998888999999


Q ss_pred             HHHHhCCc-eEEEEeccCCCCcHHHHHH-HHHHHHHHHhcC--CCCCCeEEeecC---CCCC-------HHHHHHHHHHh
Q 031293           91 LMERSQTK-YQVVLTKTDTVFPIDVARR-AMQIEESLKANN--SLVQPVMMVSSK---SGAG-------IRSLRTVLSKI  156 (162)
Q Consensus        91 ~l~~~~~~-~ivv~nK~Dl~~~~~~~~~-~~~~~~~~~~~~--~~~~~i~~~Sa~---~~~g-------~~~l~~~i~~~  156 (162)
                      .+...++| +++++||+|+++..+..+. .+.+++.+...+  ....+++++||.   +|.|       +.+|++++.+.
T Consensus       171 ~~~~~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~  250 (447)
T PLN03127        171 LARQVGVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEY  250 (447)
T ss_pred             HHHHcCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHh
Confidence            99988999 5789999999864443332 235555554322  124688888876   4444       67888888775


Q ss_pred             h
Q 031293          157 A  157 (162)
Q Consensus       157 ~  157 (162)
                      +
T Consensus       251 l  251 (447)
T PLN03127        251 I  251 (447)
T ss_pred             C
Confidence            4

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=99.74  E-value=3.9e-17  Score=127.17  Aligned_cols=142  Identities=23%  Similarity=0.267  Sum_probs=95.9

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEE--e-CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFK--L-GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT   77 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~--~-~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~   77 (162)
                      |+|+|++.  ...+++.||+|.+.....  . +.++.++||||+...... +..   +...+.++.. ..+|++++|+|+
T Consensus        10 L~N~Ltg~--~~~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~-s~~---e~v~~~~l~~-~~aDvvI~VvDa   82 (591)
T TIGR00437        10 LFNALTGA--NQTVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTF-SLE---EEVARDYLLN-EKPDLVVNVVDA   82 (591)
T ss_pred             HHHHHhCC--CCeecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCcc-chH---HHHHHHHHhh-cCCCEEEEEecC
Confidence            68999998  357899999998776432  2 456999999998543211 111   2233444332 356999999999


Q ss_pred             CCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293           78 KWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  157 (162)
Q Consensus        78 ~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~  157 (162)
                      +..  .........+.+.++|+++|+||+|+.++.......+.+.+.   .+   .+++++||++|+|++++++++.+..
T Consensus        83 t~l--er~l~l~~ql~~~~~PiIIVlNK~Dl~~~~~i~~d~~~L~~~---lg---~pvv~tSA~tg~Gi~eL~~~i~~~~  154 (591)
T TIGR00437        83 SNL--ERNLYLTLQLLELGIPMILALNLVDEAEKKGIRIDEEKLEER---LG---VPVVPTSATEGRGIERLKDAIRKAI  154 (591)
T ss_pred             Ccc--hhhHHHHHHHHhcCCCEEEEEehhHHHHhCCChhhHHHHHHH---cC---CCEEEEECCCCCCHHHHHHHHHHHh
Confidence            763  223344445556789999999999986433222222233222   22   4899999999999999999998754

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=99.74  E-value=5.6e-17  Score=129.14  Aligned_cols=143  Identities=20%  Similarity=0.207  Sum_probs=98.5

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEe---CCceEEEcCCCCcccccC---HHHHHHHHHHHHHHHhcCcccceeEEE
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAK---EEVKDAWEELVKEYVSTRVSLKRVCLL   74 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~vi~v   74 (162)
                      |+|+|+|.  ..++++.||+|.+......   +.++.++||||+......   .+..   +.....++. ...+|++++|
T Consensus        19 LfN~Ltg~--~~~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~---E~i~~~~l~-~~~aD~vI~V   92 (772)
T PRK09554         19 LFNQLTGA--RQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLD---EQIACHYIL-SGDADLLINV   92 (772)
T ss_pred             HHHHHhCC--CCccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHH---HHHHHHHHh-ccCCCEEEEE
Confidence            68999998  3579999999987664322   456999999998543211   1111   223344433 2356999999


Q ss_pred             eecCCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHH
Q 031293           75 IDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLS  154 (162)
Q Consensus        75 id~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~  154 (162)
                      +|+....  ....+...+.+.++|+++|+||+|+.++.......+.+++.+   +   .|++++||.+|+|++++++.+.
T Consensus        93 vDat~le--r~l~l~~ql~e~giPvIvVlNK~Dl~~~~~i~id~~~L~~~L---G---~pVvpiSA~~g~GIdeL~~~I~  164 (772)
T PRK09554         93 VDASNLE--RNLYLTLQLLELGIPCIVALNMLDIAEKQNIRIDIDALSARL---G---CPVIPLVSTRGRGIEALKLAID  164 (772)
T ss_pred             ecCCcch--hhHHHHHHHHHcCCCEEEEEEchhhhhccCcHHHHHHHHHHh---C---CCEEEEEeecCCCHHHHHHHHH
Confidence            9997632  233444566677999999999999875444333333443333   2   4899999999999999999997


Q ss_pred             Hhh
Q 031293          155 KIA  157 (162)
Q Consensus       155 ~~~  157 (162)
                      +..
T Consensus       165 ~~~  167 (772)
T PRK09554        165 RHQ  167 (772)
T ss_pred             Hhh
Confidence            754

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=99.74  E-value=2.9e-17  Score=124.43  Aligned_cols=137  Identities=25%  Similarity=0.293  Sum_probs=95.0

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT   77 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~   77 (162)
                      |+|+|++. ..+.+++.||+|++.....+   +.++.++||||+....   ...+.  ..++........+|++++|+|+
T Consensus       231 Lln~L~~~-~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~---~~ie~--~gi~~~~~~~~~aD~il~VvD~  304 (449)
T PRK05291        231 LLNALLGE-ERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETD---DEVEK--IGIERSREAIEEADLVLLVLDA  304 (449)
T ss_pred             HHHHHhCC-CCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCc---cHHHH--HHHHHHHHHHHhCCEEEEEecC
Confidence            68999998 56788999999987764332   5579999999985321   11111  1123333445567999999999


Q ss_pred             CCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293           78 KWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  157 (162)
Q Consensus        78 ~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~  157 (162)
                      +.+.+..+...+..  ..++|+++|+||+|+.+.....          ..   ...+++++||++|.|+++++++|.+.+
T Consensus       305 s~~~s~~~~~~l~~--~~~~piiiV~NK~DL~~~~~~~----------~~---~~~~~i~iSAktg~GI~~L~~~L~~~l  369 (449)
T PRK05291        305 SEPLTEEDDEILEE--LKDKPVIVVLNKADLTGEIDLE----------EE---NGKPVIRISAKTGEGIDELREAIKELA  369 (449)
T ss_pred             CCCCChhHHHHHHh--cCCCCcEEEEEhhhccccchhh----------hc---cCCceEEEEeeCCCCHHHHHHHHHHHH
Confidence            87665444433332  3478999999999997543221          11   124899999999999999999998765


Q ss_pred             h
Q 031293          158 R  158 (162)
Q Consensus       158 ~  158 (162)
                      .
T Consensus       370 ~  370 (449)
T PRK05291        370 F  370 (449)
T ss_pred             h
Confidence            3

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.74  E-value=8.6e-17  Score=120.42  Aligned_cols=129  Identities=20%  Similarity=0.250  Sum_probs=100.4

Q ss_pred             CCCCcceEEEEEEe--C----CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHH
Q 031293           16 DKPGLTQTINFFKL--G----TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELI   89 (162)
Q Consensus        16 ~~~g~t~~~~~~~~--~----~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~   89 (162)
                      .--|.|+.+.-|..  +    ..++|+|||||             +.|...-.++..-+|++++|+++.+++.+++.+-.
T Consensus        34 EaGGITQhIGA~~v~~~~~~~~~itFiDTPGH-------------eAFt~mRaRGa~vtDIaILVVa~dDGv~pQTiEAI  100 (509)
T COG0532          34 EAGGITQHIGAYQVPLDVIKIPGITFIDTPGH-------------EAFTAMRARGASVTDIAILVVAADDGVMPQTIEAI  100 (509)
T ss_pred             cCCceeeEeeeEEEEeccCCCceEEEEcCCcH-------------HHHHHHHhcCCccccEEEEEEEccCCcchhHHHHH
Confidence            34568998887654  2    46999999999             77776667788889999999999999999999999


Q ss_pred             HHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHH--HHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293           90 SLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEES--LKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR  158 (162)
Q Consensus        90 ~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~  158 (162)
                      +.++..+.|+++++||+|.++.... .....+.+.  ..+.+.....++++||++|+|+++|+..+..+.+
T Consensus       101 ~hak~a~vP~iVAiNKiDk~~~np~-~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~Gi~eLL~~ill~ae  170 (509)
T COG0532         101 NHAKAAGVPIVVAINKIDKPEANPD-KVKQELQEYGLVPEEWGGDVIFVPVSAKTGEGIDELLELILLLAE  170 (509)
T ss_pred             HHHHHCCCCEEEEEecccCCCCCHH-HHHHHHHHcCCCHhhcCCceEEEEeeccCCCCHHHHHHHHHHHHH
Confidence            9999999999999999999843322 222222221  1122334478999999999999999999876654

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=99.74  E-value=3.4e-17  Score=130.01  Aligned_cols=139  Identities=23%  Similarity=0.287  Sum_probs=98.5

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT   77 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~   77 (162)
                      |+++|.+. ... .+..+|+|.++..+.+   +.++++||||||             ..+.....++...+|++++|+|+
T Consensus       306 Ll~~Lr~~-~v~-~~e~~GIT~~iga~~v~~~~~~ItfiDTPGh-------------e~F~~m~~rga~~aDiaILVVdA  370 (787)
T PRK05306        306 LLDAIRKT-NVA-AGEAGGITQHIGAYQVETNGGKITFLDTPGH-------------EAFTAMRARGAQVTDIVVLVVAA  370 (787)
T ss_pred             HHHHHHhC-Ccc-ccccCceeeeccEEEEEECCEEEEEEECCCC-------------ccchhHHHhhhhhCCEEEEEEEC
Confidence            56777665 232 3556788887776544   456999999999             33444444556677999999999


Q ss_pred             CCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHH---HHhcCCCCCCeEEeecCCCCCHHHHHHHHH
Q 031293           78 KWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEES---LKANNSLVQPVMMVSSKSGAGIRSLRTVLS  154 (162)
Q Consensus        78 ~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~---~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~  154 (162)
                      .++....+.+.+..+...++|+++++||+|+.... .......+.+.   ....+ ...+++++||++|.|+++|+++|.
T Consensus       371 ddGv~~qT~e~i~~a~~~~vPiIVviNKiDl~~a~-~e~V~~eL~~~~~~~e~~g-~~vp~vpvSAktG~GI~eLle~I~  448 (787)
T PRK05306        371 DDGVMPQTIEAINHAKAAGVPIIVAINKIDKPGAN-PDRVKQELSEYGLVPEEWG-GDTIFVPVSAKTGEGIDELLEAIL  448 (787)
T ss_pred             CCCCCHhHHHHHHHHHhcCCcEEEEEECccccccC-HHHHHHHHHHhcccHHHhC-CCceEEEEeCCCCCCchHHHHhhh
Confidence            99888888888888888899999999999996422 11222222211   11111 236899999999999999999987


Q ss_pred             Hh
Q 031293          155 KI  156 (162)
Q Consensus       155 ~~  156 (162)
                      ..
T Consensus       449 ~~  450 (787)
T PRK05306        449 LQ  450 (787)
T ss_pred             hh
Confidence            53

>CHL00071 tufA elongation factor Tu

Probab=99.74  E-value=1.1e-16  Score=120.26  Aligned_cols=118  Identities=19%  Similarity=0.242  Sum_probs=92.2

Q ss_pred             ccCCCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHH
Q 031293           14 TSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELIS   90 (162)
Q Consensus        14 ~~~~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~   90 (162)
                      .+..+|+|.+.....+   +.++.++|||||             ..++..+..+...+|++++|+|+.+++..++.+++.
T Consensus        55 ~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh-------------~~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~  121 (409)
T CHL00071         55 EEKARGITINTAHVEYETENRHYAHVDCPGH-------------ADYVKNMITGAAQMDGAILVVSAADGPMPQTKEHIL  121 (409)
T ss_pred             hhhcCCEeEEccEEEEccCCeEEEEEECCCh-------------HHHHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHH
Confidence            3445889887765444   446899999999             678888888888899999999999999888999999


Q ss_pred             HHHHhCCc-eEEEEeccCCCCcHHH-HHHHHHHHHHHHhcCC--CCCCeEEeecCCCC
Q 031293           91 LMERSQTK-YQVVLTKTDTVFPIDV-ARRAMQIEESLKANNS--LVQPVMMVSSKSGA  144 (162)
Q Consensus        91 ~l~~~~~~-~ivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~--~~~~i~~~Sa~~~~  144 (162)
                      .+...++| +++++||+|+++..+. +...+.+.+.+...+.  ...+++++||.+|.
T Consensus       122 ~~~~~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ii~~Sa~~g~  179 (409)
T CHL00071        122 LAKQVGVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYDFPGDDIPIVSGSALLAL  179 (409)
T ss_pred             HHHHcCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhCCCCCcceEEEcchhhcc
Confidence            88888999 7789999999864443 3334566666665432  23689999999886

>CHL00189 infB translation initiation factor 2; Provisional

Probab=99.74  E-value=4.3e-17  Score=128.47  Aligned_cols=141  Identities=21%  Similarity=0.314  Sum_probs=97.8

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEe-------CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEE
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKL-------GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCL   73 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~-------~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~   73 (162)
                      |+++|.+.. .+ .+..+|+|+++..+..       +.+++++|||||             ..+.....++...+|++++
T Consensus       260 Lld~L~~~~-~~-~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGh-------------e~F~~mr~rg~~~aDiaIL  324 (742)
T CHL00189        260 LLDKIRKTQ-IA-QKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGH-------------EAFSSMRSRGANVTDIAIL  324 (742)
T ss_pred             HHHHHHhcc-Cc-cccCCccccccceEEEEEEecCCceEEEEEECCcH-------------HHHHHHHHHHHHHCCEEEE
Confidence            467776652 22 3455778876665432       256999999999             4444444455567799999


Q ss_pred             EeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHH--HHhcCCCCCCeEEeecCCCCCHHHHHH
Q 031293           74 LIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEES--LKANNSLVQPVMMVSSKSGAGIRSLRT  151 (162)
Q Consensus        74 vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~Sa~~~~g~~~l~~  151 (162)
                      |+|+..+...++.+.+..+...++|+++++||+|+.... .....+.+...  +........+++++||++|.|+++|++
T Consensus       325 VVDA~dGv~~QT~E~I~~~k~~~iPiIVViNKiDl~~~~-~e~v~~eL~~~~ll~e~~g~~vpvv~VSAktG~GIdeLle  403 (742)
T CHL00189        325 IIAADDGVKPQTIEAINYIQAANVPIIVAINKIDKANAN-TERIKQQLAKYNLIPEKWGGDTPMIPISASQGTNIDKLLE  403 (742)
T ss_pred             EEECcCCCChhhHHHHHHHHhcCceEEEEEECCCccccC-HHHHHHHHHHhccchHhhCCCceEEEEECCCCCCHHHHHH
Confidence            999998888888888888887899999999999997432 22222222211  111111236899999999999999999


Q ss_pred             HHHHhh
Q 031293          152 VLSKIA  157 (162)
Q Consensus       152 ~i~~~~  157 (162)
                      +|....
T Consensus       404 ~I~~l~  409 (742)
T CHL00189        404 TILLLA  409 (742)
T ss_pred             hhhhhh
Confidence            997654

>TIGR00485 EF-Tu translation elongation factor TU

Probab=99.74  E-value=1.1e-16  Score=119.78  Aligned_cols=129  Identities=21%  Similarity=0.278  Sum_probs=97.6

Q ss_pred             ccCCCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHH
Q 031293           14 TSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELIS   90 (162)
Q Consensus        14 ~~~~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~   90 (162)
                      .+..+|+|.+.....+   +.++.++|||||             ++++..++.+...+|++++|+|+.+++..++.+++.
T Consensus        55 ~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh-------------~~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~  121 (394)
T TIGR00485        55 EEKARGITINTAHVEYETENRHYAHVDCPGH-------------ADYVKNMITGAAQMDGAILVVSATDGPMPQTREHIL  121 (394)
T ss_pred             HHHhcCcceeeEEEEEcCCCEEEEEEECCch-------------HHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHH
Confidence            3446899988776555   445999999999             778888888888999999999999988888888888


Q ss_pred             HHHHhCCceE-EEEeccCCCCcHHH-HHHHHHHHHHHHhcCCC--CCCeEEeecCCCC--------CHHHHHHHHHH
Q 031293           91 LMERSQTKYQ-VVLTKTDTVFPIDV-ARRAMQIEESLKANNSL--VQPVMMVSSKSGA--------GIRSLRTVLSK  155 (162)
Q Consensus        91 ~l~~~~~~~i-vv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~--~~~i~~~Sa~~~~--------g~~~l~~~i~~  155 (162)
                      .+...++|.+ +++||+|+.+..+. +...+.+++.+...+..  ..+++++||++|.        ++..+++++.+
T Consensus       122 ~~~~~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~~~~~~~~ii~vSa~~g~~g~~~~~~~~~~ll~~l~~  198 (394)
T TIGR00485       122 LARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYDFPGDDTPIIRGSALKALEGDAEWEAKILELMDAVDE  198 (394)
T ss_pred             HHHHcCCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcCCCccCccEEECccccccccCCchhHhHHHHHHHHHh
Confidence            8888899865 68999999864432 33334566666655432  2689999999874        34556665554

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=99.74  E-value=7.9e-17  Score=121.85  Aligned_cols=122  Identities=17%  Similarity=0.223  Sum_probs=97.5

Q ss_pred             ccCCCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCC-------Cc
Q 031293           14 TSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV-------KP   83 (162)
Q Consensus        14 ~~~~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~-------~~   83 (162)
                      .+...|+|.++.++.+   +..++++|||||             .+++.+++.+...+|.+++|+|+.++.       ..
T Consensus        65 ~Er~rGiTid~~~~~~~~~~~~i~lIDtPGh-------------~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~  131 (446)
T PTZ00141         65 AERERGITIDIALWKFETPKYYFTIIDAPGH-------------RDFIKNMITGTSQADVAILVVASTAGEFEAGISKDG  131 (446)
T ss_pred             HHHhcCEeEEeeeEEEccCCeEEEEEECCCh-------------HHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCc
Confidence            3456788888877655   446899999999             888999999999999999999999876       36


Q ss_pred             cHHHHHHHHHHhCCc-eEEEEeccCCC----CcHHHHHHHHHHHHHHHhcCC--CCCCeEEeecCCCCCHHH
Q 031293           84 RDHELISLMERSQTK-YQVVLTKTDTV----FPIDVARRAMQIEESLKANNS--LVQPVMMVSSKSGAGIRS  148 (162)
Q Consensus        84 ~~~~~~~~l~~~~~~-~ivv~nK~Dl~----~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~Sa~~~~g~~~  148 (162)
                      ++.+++..+...++| +|+++||+|..    ++...++..+.+++.+...+.  ...+++++||.+|.|+.+
T Consensus       132 qT~eh~~~~~~~gi~~iiv~vNKmD~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~  203 (446)
T PTZ00141        132 QTREHALLAFTLGVKQMIVCINKMDDKTVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE  203 (446)
T ss_pred             cHHHHHHHHHHcCCCeEEEEEEccccccchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence            788888888888988 67999999943    234566777777777765443  247899999999999864

>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.74  E-value=9.6e-17  Score=112.77  Aligned_cols=156  Identities=19%  Similarity=0.215  Sum_probs=108.6

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT   77 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~   77 (162)
                      |.|.+.|+ .++.+|.++.||+.-...-+   ..++.+.||||.-..... ........++.++..+...+|+++++.|+
T Consensus        88 LtN~mig~-kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~-r~~~l~~s~lq~~~~a~q~AD~vvVv~Da  165 (379)
T KOG1423|consen   88 LTNQMIGQ-KVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMH-RRHHLMMSVLQNPRDAAQNADCVVVVVDA  165 (379)
T ss_pred             hhhHhhCC-ccccccccccceeeeeeEEEecCceEEEEecCCcccccchh-hhHHHHHHhhhCHHHHHhhCCEEEEEEec
Confidence            57999999 78999999999996665333   567999999998322111 11122234556677777889999999999


Q ss_pred             CCCCCccHHHHHHHHHHh-CCceEEEEeccCCCCcHHHH-HH------------HHHHHHHHHhc-----------CCCC
Q 031293           78 KWGVKPRDHELISLMERS-QTKYQVVLTKTDTVFPIDVA-RR------------AMQIEESLKAN-----------NSLV  132 (162)
Q Consensus        78 ~~~~~~~~~~~~~~l~~~-~~~~ivv~nK~Dl~~~~~~~-~~------------~~~~~~~~~~~-----------~~~~  132 (162)
                      ...-.......+..+.+. ++|-++|+||+|...+...- ..            .-.+++.+...           +..+
T Consensus       166 s~tr~~l~p~vl~~l~~ys~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~~f~~~p~~~~~~~~~gwshf  245 (379)
T KOG1423|consen  166 SATRTPLHPRVLHMLEEYSKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQEKFTDVPSDEKWRTICGWSHF  245 (379)
T ss_pred             cCCcCccChHHHHHHHHHhcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHHHHhccCCcccccccccCcccc
Confidence            876556667777777765 69999999999987544321 00            11122222111           1223


Q ss_pred             CCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293          133 QPVMMVSSKSGAGIRSLRTVLSKIAR  158 (162)
Q Consensus       133 ~~i~~~Sa~~~~g~~~l~~~i~~~~~  158 (162)
                      ..+|++||++|+|++++.++|...++
T Consensus       246 e~vF~vSaL~G~GikdlkqyLmsqa~  271 (379)
T KOG1423|consen  246 ERVFMVSALYGEGIKDLKQYLMSQAP  271 (379)
T ss_pred             eeEEEEecccccCHHHHHHHHHhcCC
Confidence            46999999999999999999988764

>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.73  E-value=5.1e-17  Score=114.85  Aligned_cols=115  Identities=23%  Similarity=0.281  Sum_probs=102.2

Q ss_pred             CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCC-CccHHHHHHHHHHhCCc-eEEEEeccCC
Q 031293           31 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV-KPRDHELISLMERSQTK-YQVVLTKTDT  108 (162)
Q Consensus        31 ~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~-~~~~~~~~~~l~~~~~~-~ivv~nK~Dl  108 (162)
                      +++.|+|.|||             +-++..++.+....|.+++|+.++++. ++++.+++..|.-.++. +++|.||+|+
T Consensus        86 R~VSfVDaPGH-------------e~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIigik~iiIvQNKIDl  152 (415)
T COG5257          86 RRVSFVDAPGH-------------ETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIGIKNIIIVQNKIDL  152 (415)
T ss_pred             EEEEEeeCCch-------------HHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhccceEEEEecccce
Confidence            36899999999             888999999999999999999999864 67788888888777755 8999999999


Q ss_pred             CCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293          109 VFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR  158 (162)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~  158 (162)
                      ++++...+..+.+.++++.......|++++||..+.|++.|+++|.+.++
T Consensus       153 V~~E~AlE~y~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~Ip  202 (415)
T COG5257         153 VSRERALENYEQIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIP  202 (415)
T ss_pred             ecHHHHHHHHHHHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCC
Confidence            99988888888999999888777789999999999999999999998664

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.73  E-value=7.9e-17  Score=117.31  Aligned_cols=123  Identities=20%  Similarity=0.254  Sum_probs=98.1

Q ss_pred             eccCCCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCC-------CC
Q 031293           13 RTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG-------VK   82 (162)
Q Consensus        13 ~~~~~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~-------~~   82 (162)
                      +.+...|.|.+.....+   ...++++|+|||             +.++++++.+.+++|+.++|+|++.+       ..
T Consensus        64 keERerGvTi~~~~~~fet~k~~~tIiDaPGH-------------rdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~  130 (428)
T COG5256          64 KEERERGVTIDVAHSKFETDKYNFTIIDAPGH-------------RDFVKNMITGASQADVAVLVVDARDGEFEAGFGVG  130 (428)
T ss_pred             hhHHhcceEEEEEEEEeecCCceEEEeeCCch-------------HHHHHHhhcchhhccEEEEEEECCCCccccccccC
Confidence            45667888887776544   456999999999             99999999999999999999999886       67


Q ss_pred             ccHHHHHHHHHHhCCc-eEEEEeccCCC--CcHHHHHHHHHHHHHHHhcCCC--CCCeEEeecCCCCCHHH
Q 031293           83 PRDHELISLMERSQTK-YQVVLTKTDTV--FPIDVARRAMQIEESLKANNSL--VQPVMMVSSKSGAGIRS  148 (162)
Q Consensus        83 ~~~~~~~~~l~~~~~~-~ivv~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~Sa~~~~g~~~  148 (162)
                      .++.+++-..+..++. +|+++||+|++  ++...++..+.+..+++..+..  ..+++|+|+..|+|+.+
T Consensus       131 gQtrEH~~La~tlGi~~lIVavNKMD~v~wde~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~  201 (428)
T COG5256         131 GQTREHAFLARTLGIKQLIVAVNKMDLVSWDEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTK  201 (428)
T ss_pred             CchhHHHHHHHhcCCceEEEEEEcccccccCHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccc
Confidence            7888887777777766 89999999999  4555666666666655544433  47899999999998764

>PRK00049 elongation factor Tu; Reviewed

Probab=99.73  E-value=2.4e-16  Score=117.89  Aligned_cols=130  Identities=21%  Similarity=0.259  Sum_probs=101.1

Q ss_pred             cCCCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHH
Q 031293           15 SDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISL   91 (162)
Q Consensus        15 ~~~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~   91 (162)
                      +..+|+|.+.....+   +.++.++|||||             ..++..+..+...+|++++|+|+..++...+.+++.+
T Consensus        56 E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~-------------~~f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~  122 (396)
T PRK00049         56 EKARGITINTAHVEYETEKRHYAHVDCPGH-------------ADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILL  122 (396)
T ss_pred             HHhcCeEEeeeEEEEcCCCeEEEEEECCCH-------------HHHHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHH
Confidence            347899988776555   456999999999             7788888888889999999999999988888899998


Q ss_pred             HHHhCCceE-EEEeccCCCCcHH-HHHHHHHHHHHHHhcCC--CCCCeEEeecCCCC----------CHHHHHHHHHHhh
Q 031293           92 MERSQTKYQ-VVLTKTDTVFPID-VARRAMQIEESLKANNS--LVQPVMMVSSKSGA----------GIRSLRTVLSKIA  157 (162)
Q Consensus        92 l~~~~~~~i-vv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~--~~~~i~~~Sa~~~~----------g~~~l~~~i~~~~  157 (162)
                      +...++|.+ +++||+|+.+..+ .+...+.+++.+...+.  ...+++++||++|.          |+..|+++|.+.+
T Consensus       123 ~~~~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~  202 (396)
T PRK00049        123 ARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYI  202 (396)
T ss_pred             HHHcCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcC
Confidence            888899975 6899999985333 23334456666654332  34689999999874          5778888888754

>cd01890 LepA LepA subfamily

Probab=99.73  E-value=1.5e-16  Score=106.80  Aligned_cols=109  Identities=24%  Similarity=0.261  Sum_probs=74.7

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCCCc
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP  111 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~  111 (162)
                      .+.++||||+.          .+...+..++   ..+|++++|+|+..+....+...+..+...++|+++|+||+|+.+.
T Consensus        68 ~~~l~Dt~G~~----------~~~~~~~~~~---~~ad~~i~v~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~  134 (179)
T cd01890          68 LLNLIDTPGHV----------DFSYEVSRSL---AACEGALLLVDATQGVEAQTLANFYLALENNLEIIPVINKIDLPSA  134 (179)
T ss_pred             EEEEEECCCCh----------hhHHHHHHHH---HhcCeEEEEEECCCCccHhhHHHHHHHHHcCCCEEEEEECCCCCcC
Confidence            47899999992          2233333343   4569999999998876555555555555568999999999998643


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293          112 IDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  157 (162)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~  157 (162)
                      .. ....+.+.+.++   ....+++++||++|.|+++++++|.+.+
T Consensus       135 ~~-~~~~~~~~~~~~---~~~~~~~~~Sa~~g~gi~~l~~~l~~~~  176 (179)
T cd01890         135 DP-ERVKQQIEDVLG---LDPSEAILVSAKTGLGVEDLLEAIVERI  176 (179)
T ss_pred             CH-HHHHHHHHHHhC---CCcccEEEeeccCCCCHHHHHHHHHhhC
Confidence            21 222233333322   2223689999999999999999998765

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=99.71  E-value=8.5e-17  Score=107.58  Aligned_cols=143  Identities=19%  Similarity=0.224  Sum_probs=89.4

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEE--Ee--CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEee
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFF--KL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLID   76 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~--~~--~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid   76 (162)
                      |+|+|++.. . .++..+++|......  ..  +.++.++||||+.......      +.+...+......+|++++|+|
T Consensus        12 ll~~l~~~~-~-~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~------~~~~~~~~~~~~~~d~ii~v~d   83 (176)
T cd01881          12 LLNALTNAK-P-KVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEG------RGLGNQFLAHIRRADAILHVVD   83 (176)
T ss_pred             HHHHHhcCC-c-cccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcC------CCccHHHHHHHhccCEEEEEEe
Confidence            578999883 3 677888888765542  22  4668999999984321100      1112233333445799999999


Q ss_pred             cCCCC-----Cc-cH-HHHHHHHH----------HhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEee
Q 031293           77 TKWGV-----KP-RD-HELISLME----------RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVS  139 (162)
Q Consensus        77 ~~~~~-----~~-~~-~~~~~~l~----------~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S  139 (162)
                      +....     .. .+ ..+...+.          ..++|+++|+||+|+.+........  ...... .  ...+++++|
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~--~~~~~~-~--~~~~~~~~S  158 (176)
T cd01881          84 ASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEEL--VRELAL-E--EGAEVVPIS  158 (176)
T ss_pred             ccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHH--HHHHhc-C--CCCCEEEEe
Confidence            97652     11 11 11222222          1368999999999998655443321  111111 1  235899999


Q ss_pred             cCCCCCHHHHHHHHHHh
Q 031293          140 SKSGAGIRSLRTVLSKI  156 (162)
Q Consensus       140 a~~~~g~~~l~~~i~~~  156 (162)
                      |+++.|++++++++...
T Consensus       159 a~~~~gl~~l~~~l~~~  175 (176)
T cd01881         159 AKTEEGLDELIRAIYEL  175 (176)
T ss_pred             hhhhcCHHHHHHHHHhh
Confidence            99999999999998754

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=99.71  E-value=3.6e-16  Score=119.14  Aligned_cols=123  Identities=18%  Similarity=0.165  Sum_probs=90.6

Q ss_pred             ccCCCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHH
Q 031293           14 TSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELIS   90 (162)
Q Consensus        14 ~~~~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~   90 (162)
                      .+...|.|.+..+..+   +.++.++|||||             ..+...+..+...+|++++|+|+.+++..++.+++.
T Consensus        87 eEr~rgiTid~~~~~~~~~~~~i~~iDTPGh-------------~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~  153 (474)
T PRK05124         87 AEREQGITIDVAYRYFSTEKRKFIIADTPGH-------------EQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSF  153 (474)
T ss_pred             HHhhcCCCeEeeEEEeccCCcEEEEEECCCc-------------HHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHH
Confidence            3445777877775444   457999999999             677777777788899999999999998887777777


Q ss_pred             HHHHhCC-ceEEEEeccCCCCcH--HHHHHHHHHHHHHHhcC-CCCCCeEEeecCCCCCHHHH
Q 031293           91 LMERSQT-KYQVVLTKTDTVFPI--DVARRAMQIEESLKANN-SLVQPVMMVSSKSGAGIRSL  149 (162)
Q Consensus        91 ~l~~~~~-~~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~-~~~~~i~~~Sa~~~~g~~~l  149 (162)
                      .+...++ |+++++||+|+.+..  ......+.+...+...+ ....+++++||++|.|++++
T Consensus       154 l~~~lg~~~iIvvvNKiD~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~  216 (474)
T PRK05124        154 IATLLGIKHLVVAVNKMDLVDYSEEVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ  216 (474)
T ss_pred             HHHHhCCCceEEEEEeeccccchhHHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence            7766664 588999999998422  23444445544444332 23468999999999998764

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=99.71  E-value=4.6e-16  Score=120.68  Aligned_cols=112  Identities=21%  Similarity=0.306  Sum_probs=77.3

Q ss_pred             eEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcH
Q 031293           33 LCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPI  112 (162)
Q Consensus        33 ~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~  112 (162)
                      +.++|||||             +.+........+.+|++++|+|+.++....+.+.+..+...++|+++++||+|+....
T Consensus        71 l~~iDTpG~-------------e~f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~~vpiIVv~NK~Dl~~~~  137 (590)
T TIGR00491        71 LLFIDTPGH-------------EAFTNLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYKTPFVVAANKIDRIPGW  137 (590)
T ss_pred             EEEEECCCc-------------HhHHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHcCCCEEEEEECCCccchh
Confidence            889999999             3332223334456799999999998888888888888887899999999999997421


Q ss_pred             H--------------HHHHHHH-------HHHHHHhc------------CCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293          113 D--------------VARRAMQ-------IEESLKAN------------NSLVQPVMMVSSKSGAGIRSLRTVLSKIA  157 (162)
Q Consensus       113 ~--------------~~~~~~~-------~~~~~~~~------------~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~  157 (162)
                      .              .....+.       +...+...            .....+++++||++|+|+++|..+|....
T Consensus       138 ~~~~~~~f~e~sak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~  215 (590)
T TIGR00491       138 RSHEGRPFMESFSKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLA  215 (590)
T ss_pred             hhccCchHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHH
Confidence            0              0000000       11111211            11236999999999999999999987544

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>cd00880 Era_like Era (E

Probab=99.70  E-value=1.4e-15  Score=99.52  Aligned_cols=147  Identities=24%  Similarity=0.242  Sum_probs=97.0

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEe----CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEee
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKL----GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLID   76 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~----~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid   76 (162)
                      |+|+|++. .....+..+++|........    ...+.++||||++........   .......+   ...+|.+++++|
T Consensus        12 l~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~---~~~~~~~~---~~~~d~il~v~~   84 (163)
T cd00880          12 LLNALLGQ-EVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGRE---REELARRV---LERADLILFVVD   84 (163)
T ss_pred             HHHHHhCc-cccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhh---HHHHHHHH---HHhCCEEEEEEe
Confidence            47888887 44557777877765554333    456999999999665321110   01122222   244699999999


Q ss_pred             cCCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHh
Q 031293           77 TKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKI  156 (162)
Q Consensus        77 ~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~  156 (162)
                      +..+.......+.......+.|+++|+||+|+..........+... ... ......+++++||.++.|+++++.++.+.
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~sa~~~~~v~~l~~~l~~~  162 (163)
T cd00880          85 ADLRADEEEEKLLELLRERGKPVLLVLNKIDLLPEEEEEELLELRL-LIL-LLLLGLPVIAVSALTGEGIDELREALIEA  162 (163)
T ss_pred             CCCCCCHHHHHHHHHHHhcCCeEEEEEEccccCChhhHHHHHHHHH-hhc-ccccCCceEEEeeeccCCHHHHHHHHHhh
Confidence            9987666555545555566899999999999986654443221111 111 12234699999999999999999999865

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.70  E-value=8.8e-17  Score=106.78  Aligned_cols=113  Identities=16%  Similarity=0.175  Sum_probs=70.2

Q ss_pred             CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHH-HHH---HhCCceEEEEe
Q 031293           30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELIS-LME---RSQTKYQVVLT  104 (162)
Q Consensus        30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~-~l~---~~~~~~ivv~n  104 (162)
                      +.++.++||||+.          .+......+   .+.++++++|+|+..+.+... ..++. .+.   ..++|+++++|
T Consensus        49 ~~~~~l~Dt~G~~----------~~~~~~~~~---~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~N  115 (167)
T cd04160          49 NARLKFWDLGGQE----------SLRSLWDKY---YAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILAN  115 (167)
T ss_pred             CEEEEEEECCCCh----------hhHHHHHHH---hCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEE
Confidence            4568999999982          122233333   345699999999876421111 11222 222   23689999999


Q ss_pred             ccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHH
Q 031293          105 KTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSK  155 (162)
Q Consensus       105 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~  155 (162)
                      |+|+.......+..+.+.......+....+++++||++|.|+++++.+|.+
T Consensus       116 K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~  166 (167)
T cd04160         116 KQDLPDALSVEEIKEVFQDKAEEIGRRDCLVLPVSALEGTGVREGIEWLVE  166 (167)
T ss_pred             ccccccCCCHHHHHHHhccccccccCCceEEEEeeCCCCcCHHHHHHHHhc
Confidence            999875433333323332222222223358999999999999999999864

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]

Probab=99.70  E-value=1.2e-16  Score=119.56  Aligned_cols=128  Identities=21%  Similarity=0.225  Sum_probs=97.0

Q ss_pred             ccCCCCcceEEEEEEe------CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHH
Q 031293           14 TSDKPGLTQTINFFKL------GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHE   87 (162)
Q Consensus        14 ~~~~~g~t~~~~~~~~------~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~   87 (162)
                      ++...|+|.......+      +..+.++|||||             .+|-.+..+....|+++++|+||.+++..++..
T Consensus       102 vERERGITIkaQtasify~~~~~ylLNLIDTPGH-------------vDFs~EVsRslaac~G~lLvVDA~qGvqAQT~a  168 (650)
T KOG0462|consen  102 VERERGITIKAQTASIFYKDGQSYLLNLIDTPGH-------------VDFSGEVSRSLAACDGALLVVDASQGVQAQTVA  168 (650)
T ss_pred             hhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCc-------------ccccceehehhhhcCceEEEEEcCcCchHHHHH
Confidence            5667888875443222      255889999999             445555555566679999999999999888877


Q ss_pred             HHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293           88 LISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR  158 (162)
Q Consensus        88 ~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~  158 (162)
                      -+-..-+.+..+|.|+||+|+... +.++....+.+.+....   .+++.+||++|.|+++++++|.+.++
T Consensus       169 nf~lAfe~~L~iIpVlNKIDlp~a-dpe~V~~q~~~lF~~~~---~~~i~vSAK~G~~v~~lL~AII~rVP  235 (650)
T KOG0462|consen  169 NFYLAFEAGLAIIPVLNKIDLPSA-DPERVENQLFELFDIPP---AEVIYVSAKTGLNVEELLEAIIRRVP  235 (650)
T ss_pred             HHHHHHHcCCeEEEeeeccCCCCC-CHHHHHHHHHHHhcCCc---cceEEEEeccCccHHHHHHHHHhhCC
Confidence            666666678999999999999843 33444455655565444   49999999999999999999998764

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=99.70  E-value=7.5e-16  Score=116.41  Aligned_cols=122  Identities=18%  Similarity=0.290  Sum_probs=89.8

Q ss_pred             ccCCCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCC---CCccHHH
Q 031293           14 TSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG---VKPRDHE   87 (162)
Q Consensus        14 ~~~~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~---~~~~~~~   87 (162)
                      .+..+|+|.+..+..+   +..+.++|||||             +.+++.+..+...+|++++|+|+..+   ......+
T Consensus        65 ~e~~rg~Tid~~~~~~~~~~~~i~iiDtpGh-------------~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~  131 (426)
T TIGR00483        65 EERERGVTIDVAHWKFETDKYEVTIVDCPGH-------------RDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTRE  131 (426)
T ss_pred             HHhhcCceEEEEEEEEccCCeEEEEEECCCH-------------HHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHH
Confidence            3456788988887555   446999999999             67778888777889999999999887   4455555


Q ss_pred             HHHHHHHhCC-ceEEEEeccCCCC--cHHHHHHHHHHHHHHHhcCC--CCCCeEEeecCCCCCHHH
Q 031293           88 LISLMERSQT-KYQVVLTKTDTVF--PIDVARRAMQIEESLKANNS--LVQPVMMVSSKSGAGIRS  148 (162)
Q Consensus        88 ~~~~l~~~~~-~~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~--~~~~i~~~Sa~~~~g~~~  148 (162)
                      ++..+...+. |+++|+||+|+.+  +.......+.+++.+...+.  ...+++++||++|.|+++
T Consensus       132 ~~~~~~~~~~~~iIVviNK~Dl~~~~~~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~  197 (426)
T TIGR00483       132 HAFLARTLGINQLIVAINKMDSVNYDEEEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIK  197 (426)
T ss_pred             HHHHHHHcCCCeEEEEEEChhccCccHHHHHHHHHHHHHHHHHcCCCcccceEEEeeccccccccc
Confidence            5555555554 5899999999974  33344455566666655442  236899999999999985

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>PLN03126 Elongation factor Tu; Provisional

Probab=99.69  E-value=1.2e-15  Score=116.07  Aligned_cols=118  Identities=19%  Similarity=0.233  Sum_probs=92.7

Q ss_pred             ccCCCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHH
Q 031293           14 TSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELIS   90 (162)
Q Consensus        14 ~~~~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~   90 (162)
                      .+..+|+|.+.....+   +.++.++|||||             ++++.+++.+...+|++++|+|+.++...++.+++.
T Consensus       124 ~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh-------------~~f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~  190 (478)
T PLN03126        124 EERARGITINTATVEYETENRHYAHVDCPGH-------------ADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHIL  190 (478)
T ss_pred             hHHhCCeeEEEEEEEEecCCcEEEEEECCCH-------------HHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHH
Confidence            3556788877665433   557999999999             888889989889999999999999999888889999


Q ss_pred             HHHHhCCc-eEEEEeccCCCCcHH-HHHHHHHHHHHHHhcCC--CCCCeEEeecCCCC
Q 031293           91 LMERSQTK-YQVVLTKTDTVFPID-VARRAMQIEESLKANNS--LVQPVMMVSSKSGA  144 (162)
Q Consensus        91 ~l~~~~~~-~ivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~--~~~~i~~~Sa~~~~  144 (162)
                      .+...++| +++++||+|+.+..+ .+...+.+++.+...+.  ...+++++||.+|.
T Consensus       191 ~~~~~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~vp~Sa~~g~  248 (478)
T PLN03126        191 LAKQVGVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEFPGDDIPIISGSALLAL  248 (478)
T ss_pred             HHHHcCCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCCCcCcceEEEEEccccc
Confidence            88888999 788999999986443 33344466666665432  34789999998874

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=99.69  E-value=6.8e-16  Score=121.60  Aligned_cols=119  Identities=14%  Similarity=0.160  Sum_probs=88.9

Q ss_pred             CCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHH
Q 031293           17 KPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLME   93 (162)
Q Consensus        17 ~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~   93 (162)
                      ..|+|.+..+..+   +.++.++|||||             +.+.+.+..+...+|++++|+|+..++..++.+++..+.
T Consensus        87 ~rg~Tid~~~~~~~~~~~~~~liDtPG~-------------~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~  153 (632)
T PRK05506         87 EQGITIDVAYRYFATPKRKFIVADTPGH-------------EQYTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIAS  153 (632)
T ss_pred             hCCcCceeeeeEEccCCceEEEEECCCh-------------HHHHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHH
Confidence            4666766665433   456999999999             667777777788899999999999988888878877777


Q ss_pred             HhCC-ceEEEEeccCCCC--cHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHH
Q 031293           94 RSQT-KYQVVLTKTDTVF--PIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRS  148 (162)
Q Consensus        94 ~~~~-~~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~  148 (162)
                      ..++ ++++++||+|+.+  +.........+.+.+...+....+++++||++|.|+++
T Consensus       154 ~~~~~~iivvvNK~D~~~~~~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~  211 (632)
T PRK05506        154 LLGIRHVVLAVNKMDLVDYDQEVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT  211 (632)
T ss_pred             HhCCCeEEEEEEecccccchhHHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence            6764 5888999999974  33344444555555544444446899999999999873

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=99.69  E-value=8.6e-16  Score=116.00  Aligned_cols=138  Identities=20%  Similarity=0.218  Sum_probs=92.2

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT   77 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~   77 (162)
                      |+|+|++. ..+.+++.||+|++.....+   +..+.++||||+....   ...+.+  .+..+....+.+|++++|+|+
T Consensus       219 LiN~L~~~-~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~---~~ie~~--gi~~~~~~~~~aD~il~V~D~  292 (442)
T TIGR00450       219 LLNALLKQ-DRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHA---DFVERL--GIEKSFKAIKQADLVIYVLDA  292 (442)
T ss_pred             HHHHHhCC-CCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccch---hHHHHH--HHHHHHHHHhhCCEEEEEEEC
Confidence            68999998 56789999999998765433   4568999999985431   111111  122333444567999999999


Q ss_pred             CCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293           78 KWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  157 (162)
Q Consensus        78 ~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~  157 (162)
                      +.+.+..+. ++..+...++|+++|+||+|+... ..    +.+   ....+   .+++.+||++ .|++++++.+.+.+
T Consensus       293 s~~~s~~~~-~l~~~~~~~~piIlV~NK~Dl~~~-~~----~~~---~~~~~---~~~~~vSak~-~gI~~~~~~L~~~i  359 (442)
T TIGR00450       293 SQPLTKDDF-LIIDLNKSKKPFILVLNKIDLKIN-SL----EFF---VSSKV---LNSSNLSAKQ-LKIKALVDLLTQKI  359 (442)
T ss_pred             CCCCChhHH-HHHHHhhCCCCEEEEEECccCCCc-ch----hhh---hhhcC---CceEEEEEec-CCHHHHHHHHHHHH
Confidence            876654444 445555557899999999999643 11    111   11121   3788999998 57888777776654

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.68  E-value=9.2e-16  Score=115.05  Aligned_cols=128  Identities=19%  Similarity=0.237  Sum_probs=100.2

Q ss_pred             cCCCCcceEEEEEEe----CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHH
Q 031293           15 SDKPGLTQTINFFKL----GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELIS   90 (162)
Q Consensus        15 ~~~~g~t~~~~~~~~----~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~   90 (162)
                      +..-|+|+.+.-|..    |..++|.|||||             ..|...--++....|++++|+.+.+++.+++.+..+
T Consensus       181 ~E~GGITQhIGAF~V~~p~G~~iTFLDTPGH-------------aAF~aMRaRGA~vtDIvVLVVAadDGVmpQT~EaIk  247 (683)
T KOG1145|consen  181 GEAGGITQHIGAFTVTLPSGKSITFLDTPGH-------------AAFSAMRARGANVTDIVVLVVAADDGVMPQTLEAIK  247 (683)
T ss_pred             hhcCCccceeceEEEecCCCCEEEEecCCcH-------------HHHHHHHhccCccccEEEEEEEccCCccHhHHHHHH
Confidence            445689999998766    677999999999             666666667888899999999999999999999999


Q ss_pred             HHHHhCCceEEEEeccCCCCcHHHHHHHHHHHH---HHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293           91 LMERSQTKYQVVLTKTDTVFPIDVARRAMQIEE---SLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  157 (162)
Q Consensus        91 ~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~---~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~  157 (162)
                      ..+..++|+++++||+|...... +..+..+.+   .+...+ ..++++++||++|+|++.|-+++.-++
T Consensus       248 hAk~A~VpiVvAinKiDkp~a~p-ekv~~eL~~~gi~~E~~G-GdVQvipiSAl~g~nl~~L~eaill~A  315 (683)
T KOG1145|consen  248 HAKSANVPIVVAINKIDKPGANP-EKVKRELLSQGIVVEDLG-GDVQVIPISALTGENLDLLEEAILLLA  315 (683)
T ss_pred             HHHhcCCCEEEEEeccCCCCCCH-HHHHHHHHHcCccHHHcC-CceeEEEeecccCCChHHHHHHHHHHH
Confidence            99989999999999999874332 222222221   122233 237999999999999999999886544

>PLN00043 elongation factor 1-alpha; Provisional

Probab=99.68  E-value=1.1e-15  Score=115.61  Aligned_cols=121  Identities=18%  Similarity=0.219  Sum_probs=94.4

Q ss_pred             ccCCCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCC-------Cc
Q 031293           14 TSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV-------KP   83 (162)
Q Consensus        14 ~~~~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~-------~~   83 (162)
                      .+...|+|.+..++.+   +..++++|||||             ++|+.++..+.+.+|++++|+|+..+.       ..
T Consensus        65 ~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh-------------~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~  131 (447)
T PLN00043         65 AERERGITIDIALWKFETTKYYCTVIDAPGH-------------RDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDG  131 (447)
T ss_pred             hHHhcCceEEEEEEEecCCCEEEEEEECCCH-------------HHHHHHHHhhhhhccEEEEEEEcccCceecccCCCc
Confidence            4556788888776555   456999999999             889999999999999999999998752       24


Q ss_pred             cHHHHHHHHHHhCCc-eEEEEeccCCCC----cHHHHHHHHHHHHHHHhcCCC--CCCeEEeecCCCCCHH
Q 031293           84 RDHELISLMERSQTK-YQVVLTKTDTVF----PIDVARRAMQIEESLKANNSL--VQPVMMVSSKSGAGIR  147 (162)
Q Consensus        84 ~~~~~~~~l~~~~~~-~ivv~nK~Dl~~----~~~~~~~~~~~~~~~~~~~~~--~~~i~~~Sa~~~~g~~  147 (162)
                      +..+++..++..++| +++++||+|+.+    +....+..+.++..+...+..  ..+++++||++|.|+.
T Consensus       132 qT~eh~~~~~~~gi~~iIV~vNKmD~~~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~  202 (447)
T PLN00043        132 QTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMI  202 (447)
T ss_pred             hHHHHHHHHHHcCCCcEEEEEEcccCCchhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEecccccccc
Confidence            667777778888986 688999999863    233456667777777765532  3689999999999985

>PRK14845 translation initiation factor IF-2; Provisional

Probab=99.68  E-value=1.8e-15  Score=122.90  Aligned_cols=143  Identities=22%  Similarity=0.323  Sum_probs=97.4

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEeC---------------------CceEEEcCCCCcccccCHHHHHHHHHHHH
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKLG---------------------TKLCLVDLPGYGFAYAKEEVKDAWEELVK   59 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~~---------------------~~~~ivDtpG~~~~~~~~~~~~~~~~~~~   59 (162)
                      |+.+|.+. +++ .+..-|.|+++..+.+.                     +.+.++|||||             +.+..
T Consensus       477 LLD~iR~t-~v~-~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGh-------------e~F~~  541 (1049)
T PRK14845        477 LLDKIRKT-RVA-KKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGH-------------EAFTS  541 (1049)
T ss_pred             HHHHHhCC-Ccc-cccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCc-------------HHHHH
Confidence            34556666 332 34456789988875441                     12799999999             44433


Q ss_pred             HHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcHH--------------HHHHHHHHH---
Q 031293           60 EYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPID--------------VARRAMQIE---  122 (162)
Q Consensus        60 ~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~--------------~~~~~~~~~---  122 (162)
                      ....+...+|++++|+|+.+++..++.+.+..+...++|+++|+||+|+.....              .+...+.+.   
T Consensus       542 lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l  621 (1049)
T PRK14845        542 LRKRGGSLADLAVLVVDINEGFKPQTIEAINILRQYKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKL  621 (1049)
T ss_pred             HHHhhcccCCEEEEEEECcccCCHhHHHHHHHHHHcCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHH
Confidence            333455668999999999998888888888888888999999999999963210              011111111   


Q ss_pred             ----HHHHhc------------CCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293          123 ----ESLKAN------------NSLVQPVMMVSSKSGAGIRSLRTVLSKIAR  158 (162)
Q Consensus       123 ----~~~~~~------------~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~  158 (162)
                          ..+...            .....+++++||++|+|+++|+.+|..+.+
T Consensus       622 ~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~~  673 (1049)
T PRK14845        622 YELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLAQ  673 (1049)
T ss_pred             HHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhhH
Confidence                111211            123479999999999999999999875543

>PRK11058 GTPase HflX; Provisional

Probab=99.68  E-value=1.3e-15  Score=114.40  Aligned_cols=141  Identities=16%  Similarity=0.177  Sum_probs=91.1

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEE--e-C-CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEee
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFK--L-G-TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLID   76 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~--~-~-~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid   76 (162)
                      |+|+|++. ... +++.||+|.+.....  + + ..+.++||||+-.. .+.+.   ++. +...+.....+|++++|+|
T Consensus       213 LlN~Lt~~-~~~-v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~-lp~~l---ve~-f~~tl~~~~~ADlIL~VvD  285 (426)
T PRK11058        213 LFNRITEA-RVY-AADQLFATLDPTLRRIDVADVGETVLADTVGFIRH-LPHDL---VAA-FKATLQETRQATLLLHVVD  285 (426)
T ss_pred             HHHHHhCC-cee-eccCCCCCcCCceEEEEeCCCCeEEEEecCccccc-CCHHH---HHH-HHHHHHHhhcCCEEEEEEe
Confidence            68999998 334 788999998766432  2 2 36899999998221 12222   222 2233445567899999999


Q ss_pred             cCCCCCccHH----HHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHH
Q 031293           77 TKWGVKPRDH----ELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTV  152 (162)
Q Consensus        77 ~~~~~~~~~~----~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~  152 (162)
                      ++++......    .++..+...++|+++|+||+|+.+....     ....  ...+.  ..++++||++|.|+++|+++
T Consensus       286 aS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~~-----~~~~--~~~~~--~~~v~ISAktG~GIdeL~e~  356 (426)
T PRK11058        286 AADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFEP-----RIDR--DEENK--PIRVWLSAQTGAGIPLLFQA  356 (426)
T ss_pred             CCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchhH-----HHHH--HhcCC--CceEEEeCCCCCCHHHHHHH
Confidence            9876433332    2233333346899999999999753211     1111  11111  23588999999999999999


Q ss_pred             HHHhh
Q 031293          153 LSKIA  157 (162)
Q Consensus       153 i~~~~  157 (162)
                      |.+.+
T Consensus       357 I~~~l  361 (426)
T PRK11058        357 LTERL  361 (426)
T ss_pred             HHHHh
Confidence            98766

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=99.68  E-value=1.5e-15  Score=103.43  Aligned_cols=116  Identities=22%  Similarity=0.204  Sum_probs=72.5

Q ss_pred             CCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHH
Q 031293           18 PGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMER   94 (162)
Q Consensus        18 ~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~   94 (162)
                      .|+|.......+   +.++.++||||+          +.+......+   .+.+|++++|+|+.++.......++..+..
T Consensus        49 ~g~t~~~~~~~~~~~~~~~~l~DtpG~----------~~~~~~~~~~---~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~  115 (194)
T cd01891          49 RGITILAKNTAVTYKDTKINIVDTPGH----------ADFGGEVERV---LSMVDGVLLLVDASEGPMPQTRFVLKKALE  115 (194)
T ss_pred             cccccccceeEEEECCEEEEEEECCCc----------HHHHHHHHHH---HHhcCEEEEEEECCCCccHHHHHHHHHHHH
Confidence            555543332222   446899999999          2223333333   345699999999987654555555666666


Q ss_pred             hCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhc----CCCCCCeEEeecCCCCCHH
Q 031293           95 SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKAN----NSLVQPVMMVSSKSGAGIR  147 (162)
Q Consensus        95 ~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~----~~~~~~i~~~Sa~~~~g~~  147 (162)
                      .++|+++|+||+|+..... ....+.+.+.+...    .....+++++||++|.|+.
T Consensus       116 ~~~p~iiv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~iv~~Sa~~g~~~~  171 (194)
T cd01891         116 LGLKPIVVINKIDRPDARP-EEVVDEVFDLFIELGATEEQLDFPVLYASAKNGWASL  171 (194)
T ss_pred             cCCCEEEEEECCCCCCCCH-HHHHHHHHHHHHHhCCccccCccCEEEeehhcccccc
Confidence            6899999999999974322 22233344433221    1113589999999997764

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>PRK04004 translation initiation factor IF-2; Validated

Probab=99.67  E-value=2.7e-15  Score=116.73  Aligned_cols=112  Identities=24%  Similarity=0.358  Sum_probs=78.4

Q ss_pred             eEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcH
Q 031293           33 LCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPI  112 (162)
Q Consensus        33 ~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~  112 (162)
                      +.++||||+             +.+.....++...+|++++|+|+..++...+.+.+..+...++|+++++||+|+....
T Consensus        73 i~~iDTPG~-------------e~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~~vpiIvviNK~D~~~~~  139 (586)
T PRK04004         73 LLFIDTPGH-------------EAFTNLRKRGGALADIAILVVDINEGFQPQTIEAINILKRRKTPFVVAANKIDRIPGW  139 (586)
T ss_pred             EEEEECCCh-------------HHHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCchhh
Confidence            789999999             4443333344566799999999998888888888888887899999999999985211


Q ss_pred             H---------------------HHHHHHHHHHHHHhcC------------CCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293          113 D---------------------VARRAMQIEESLKANN------------SLVQPVMMVSSKSGAGIRSLRTVLSKIA  157 (162)
Q Consensus       113 ~---------------------~~~~~~~~~~~~~~~~------------~~~~~i~~~Sa~~~~g~~~l~~~i~~~~  157 (162)
                      .                     ..+....+...+...+            ....+++++||++|.|+++|++.+....
T Consensus       140 ~~~~~~~~~e~~~~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~  217 (586)
T PRK04004        140 KSTEDAPFLESIEKQSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLA  217 (586)
T ss_pred             hhhcCchHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHH
Confidence            0                     0111111222222222            1236899999999999999998886543

>PRK05433 GTP-binding protein LepA; Provisional

Probab=99.67  E-value=1.6e-15  Score=118.31  Aligned_cols=111  Identities=22%  Similarity=0.249  Sum_probs=79.8

Q ss_pred             CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCCC
Q 031293           31 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF  110 (162)
Q Consensus        31 ~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~  110 (162)
                      ..+.+|||||+             ..+.....+..+.+|++++|+|+..+....+...+..+...++|+++|+||+|+..
T Consensus        74 ~~lnLiDTPGh-------------~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~~~lpiIvViNKiDl~~  140 (600)
T PRK05433         74 YILNLIDTPGH-------------VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENDLEIIPVLNKIDLPA  140 (600)
T ss_pred             EEEEEEECCCc-------------HHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCc
Confidence            45899999999             33433333444567999999999988877776666666667899999999999864


Q ss_pred             cHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293          111 PIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR  158 (162)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~  158 (162)
                      .. .....+.+.+.++   ....+++++||++|.|+++++++|.+.++
T Consensus       141 a~-~~~v~~ei~~~lg---~~~~~vi~iSAktG~GI~~Ll~~I~~~lp  184 (600)
T PRK05433        141 AD-PERVKQEIEDVIG---IDASDAVLVSAKTGIGIEEVLEAIVERIP  184 (600)
T ss_pred             cc-HHHHHHHHHHHhC---CCcceEEEEecCCCCCHHHHHHHHHHhCc
Confidence            32 2223334443332   22236899999999999999999987654

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=99.67  E-value=6e-16  Score=102.07  Aligned_cols=139  Identities=16%  Similarity=0.166  Sum_probs=78.7

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEeCCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCC
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG   80 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~   80 (162)
                      |+|+|++. ......+..|.+.......-+..+.++||||..          .+......++   ..+|++++|+|+.++
T Consensus        15 l~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~l~i~D~~G~~----------~~~~~~~~~~---~~~~~iv~v~D~~~~   80 (160)
T cd04156          15 LLYKLKHA-ELVTTIPTVGFNVEMLQLEKHLSLTVWDVGGQE----------KMRTVWKCYL---ENTDGLVYVVDSSDE   80 (160)
T ss_pred             HHHHHhcC-CcccccCccCcceEEEEeCCceEEEEEECCCCH----------hHHHHHHHHh---ccCCEEEEEEECCcH
Confidence            46778777 333334444433221111113458999999981          1223333333   345999999999865


Q ss_pred             C--CccHHHHHHHHHH---hCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhc-CCCCCCeEEeecCCCCCHHHHHHHHH
Q 031293           81 V--KPRDHELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKAN-NSLVQPVMMVSSKSGAGIRSLRTVLS  154 (162)
Q Consensus        81 ~--~~~~~~~~~~l~~---~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~Sa~~~~g~~~l~~~i~  154 (162)
                      .  .....++...+..   .+.|+++|+||+|+.......+....+.  .... .....+++++||++|+|+++++++|.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~--~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~i~  158 (160)
T cd04156          81 ARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAEEITRRFK--LKKYCSDRDWYVQPCSAVTGEGLAEAFRKLA  158 (160)
T ss_pred             HHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcCHHHHHHHcC--CcccCCCCcEEEEecccccCCChHHHHHHHh
Confidence            3  1122222233322   3689999999999864221222111111  0111 11124689999999999999999986


Q ss_pred             H
Q 031293          155 K  155 (162)
Q Consensus       155 ~  155 (162)
                      +
T Consensus       159 ~  159 (160)
T cd04156         159 S  159 (160)
T ss_pred             c
Confidence            4

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>cd01878 HflX HflX subfamily

Probab=99.66  E-value=3.6e-15  Score=102.31  Aligned_cols=139  Identities=18%  Similarity=0.217  Sum_probs=85.7

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEe---C-CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEee
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKL---G-TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLID   76 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~---~-~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid   76 (162)
                      |+|+|++. . ..++..++.|.+......   + ..+.++||||+..... ....+.+.    ..+.....+|++++|+|
T Consensus        57 Ll~~l~~~-~-~~~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-~~~~~~~~----~~~~~~~~~d~ii~v~D  129 (204)
T cd01878          57 LFNALTGA-D-VYAEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLP-HQLVEAFR----STLEEVAEADLLLHVVD  129 (204)
T ss_pred             HHHHHhcc-h-hccCCccceeccceeEEEEecCCceEEEeCCCccccCCC-HHHHHHHH----HHHHHHhcCCeEEEEEE
Confidence            57888887 2 334555665654433222   2 2699999999843211 11111121    22222345699999999


Q ss_pred             cCCCCCccHH-HHHHHHHH---hCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHH
Q 031293           77 TKWGVKPRDH-ELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTV  152 (162)
Q Consensus        77 ~~~~~~~~~~-~~~~~l~~---~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~  152 (162)
                      ++.+....+. .+..++..   .++|+++|+||+|+.......       .....   ...+++++||+++.|+++++.+
T Consensus       130 ~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~~-------~~~~~---~~~~~~~~Sa~~~~gi~~l~~~  199 (204)
T cd01878         130 ASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEELE-------ERLEA---GRPDAVFISAKTGEGLDELLEA  199 (204)
T ss_pred             CCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHHH-------HHhhc---CCCceEEEEcCCCCCHHHHHHH
Confidence            9876544332 23344433   358999999999997654332       11221   2258999999999999999999


Q ss_pred             HHHh
Q 031293          153 LSKI  156 (162)
Q Consensus       153 i~~~  156 (162)
                      |...
T Consensus       200 L~~~  203 (204)
T cd01878         200 IEEL  203 (204)
T ss_pred             HHhh
Confidence            8764

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>cd04154 Arl2 Arl2 subfamily

Probab=99.65  E-value=1.3e-15  Score=101.84  Aligned_cols=135  Identities=19%  Similarity=0.226  Sum_probs=80.9

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEe-CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCC
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKL-GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW   79 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~-~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~   79 (162)
                      |+|+|++. ......++.|....  .... +.++.++||||+          +.+..+...++   +.+|++++|+|+..
T Consensus        30 L~~~l~~~-~~~~~~~t~g~~~~--~~~~~~~~l~l~D~~G~----------~~~~~~~~~~~---~~~d~~i~v~d~~~   93 (173)
T cd04154          30 ILKKLLGE-DIDTISPTLGFQIK--TLEYEGYKLNIWDVGGQ----------KTLRPYWRNYF---ESTDALIWVVDSSD   93 (173)
T ss_pred             HHHHHccC-CCCCcCCccccceE--EEEECCEEEEEEECCCC----------HHHHHHHHHHh---CCCCEEEEEEECCC
Confidence            46777776 34444444443221  1222 445899999998          22233444444   35699999999876


Q ss_pred             CC--CccHHHHHHHHH---HhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhc--CCCCCCeEEeecCCCCCHHHHHHH
Q 031293           80 GV--KPRDHELISLME---RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKAN--NSLVQPVMMVSSKSGAGIRSLRTV  152 (162)
Q Consensus        80 ~~--~~~~~~~~~~l~---~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~Sa~~~~g~~~l~~~  152 (162)
                      +-  .....++...+.   ..++|+++|+||+|+......+    .+.+.+...  .....+++++||++|.|+++++++
T Consensus        94 ~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~----~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~  169 (173)
T cd04154          94 RLRLDDCKRELKELLQEERLAGATLLILANKQDLPGALSEE----EIREALELDKISSHHWRIQPCSAVTGEGLLQGIDW  169 (173)
T ss_pred             HHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCCCHH----HHHHHhCccccCCCceEEEeccCCCCcCHHHHHHH
Confidence            42  111112222222   2468999999999997533222    222223221  122358999999999999999999


Q ss_pred             HHH
Q 031293          153 LSK  155 (162)
Q Consensus       153 i~~  155 (162)
                      +.+
T Consensus       170 l~~  172 (173)
T cd04154         170 LVD  172 (173)
T ss_pred             Hhc
Confidence            853

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=99.65  E-value=3.5e-15  Score=116.16  Aligned_cols=129  Identities=20%  Similarity=0.217  Sum_probs=93.5

Q ss_pred             CCCCcceEEEEE--Ee-CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHH
Q 031293           16 DKPGLTQTINFF--KL-GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLM   92 (162)
Q Consensus        16 ~~~g~t~~~~~~--~~-~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l   92 (162)
                      ...|+|......  .+ +.++.++|||||             .++..+..+..+.+|++++|+|+.++...++..++..+
T Consensus        46 rerGiTI~~~~~~v~~~~~kinlIDTPGh-------------~DF~~ev~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a  112 (594)
T TIGR01394        46 RERGITILAKNTAIRYNGTKINIVDTPGH-------------ADFGGEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKA  112 (594)
T ss_pred             HhCCccEEeeeEEEEECCEEEEEEECCCH-------------HHHHHHHHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHH
Confidence            356777654432  22 567999999999             55555555556677999999999988888888888888


Q ss_pred             HHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCC----CCCCeEEeecCCCC----------CHHHHHHHHHHhhh
Q 031293           93 ERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNS----LVQPVMMVSSKSGA----------GIRSLRTVLSKIAR  158 (162)
Q Consensus        93 ~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~----~~~~i~~~Sa~~~~----------g~~~l~~~i~~~~~  158 (162)
                      ...++|+++|+||+|+.... ..+..+.+.+.+...+.    ..+|++++||++|.          |++.+++.|.+.++
T Consensus       113 ~~~~ip~IVviNKiD~~~a~-~~~v~~ei~~l~~~~g~~~e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP  191 (594)
T TIGR01394       113 LELGLKPIVVINKIDRPSAR-PDEVVDEVFDLFAELGADDEQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVP  191 (594)
T ss_pred             HHCCCCEEEEEECCCCCCcC-HHHHHHHHHHHHHhhccccccccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCC
Confidence            88899999999999986432 22333444444432211    13589999999995          79999999887664

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>TIGR01393 lepA GTP-binding protein LepA

Probab=99.65  E-value=3.3e-15  Score=116.49  Aligned_cols=126  Identities=21%  Similarity=0.263  Sum_probs=85.9

Q ss_pred             CCCCcceEEEEEEe-----C---CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHH
Q 031293           16 DKPGLTQTINFFKL-----G---TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHE   87 (162)
Q Consensus        16 ~~~g~t~~~~~~~~-----~---~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~   87 (162)
                      ...|.|.......+     +   .++.+|||||+             .++........+.+|++++|+|+.++....+..
T Consensus        47 rerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~-------------~dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~  113 (595)
T TIGR01393        47 RERGITIKAQAVRLNYKAKDGETYVLNLIDTPGH-------------VDFSYEVSRSLAACEGALLLVDAAQGIEAQTLA  113 (595)
T ss_pred             HhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCc-------------HHHHHHHHHHHHhCCEEEEEecCCCCCCHhHHH
Confidence            34577765433211     2   35899999999             344334444455679999999999887777766


Q ss_pred             HHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293           88 LISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR  158 (162)
Q Consensus        88 ~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~  158 (162)
                      .+..+...++|+++|+||+|+.+.. .....+.+.+.++   ....+++++||++|.|+++++++|.+.++
T Consensus       114 ~~~~~~~~~ipiIiViNKiDl~~~~-~~~~~~el~~~lg---~~~~~vi~vSAktG~GI~~Lle~I~~~lp  180 (595)
T TIGR01393       114 NVYLALENDLEIIPVINKIDLPSAD-PERVKKEIEEVIG---LDASEAILASAKTGIGIEEILEAIVKRVP  180 (595)
T ss_pred             HHHHHHHcCCCEEEEEECcCCCccC-HHHHHHHHHHHhC---CCcceEEEeeccCCCCHHHHHHHHHHhCC
Confidence            5555555689999999999986432 2222334433332   21236899999999999999999987654

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=99.64  E-value=5.8e-15  Score=97.42  Aligned_cols=107  Identities=16%  Similarity=0.184  Sum_probs=70.6

Q ss_pred             EEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcHHH
Q 031293           35 LVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDV  114 (162)
Q Consensus        35 ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~  114 (162)
                      +|||||+....         ..+..........+|++++++|+..+.+....+++..  ..+.|+++++||+|+.+.. .
T Consensus        41 ~iDtpG~~~~~---------~~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~--~~~~~ii~v~nK~Dl~~~~-~  108 (158)
T PRK15467         41 DIDTPGEYFSH---------PRWYHALITTLQDVDMLIYVHGANDPESRLPAGLLDI--GVSKRQIAVISKTDMPDAD-V  108 (158)
T ss_pred             cccCCccccCC---------HHHHHHHHHHHhcCCEEEEEEeCCCcccccCHHHHhc--cCCCCeEEEEEccccCccc-H
Confidence            79999974331         1223333334566799999999987654433333332  1367899999999986422 2


Q ss_pred             HHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293          115 ARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR  158 (162)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~  158 (162)
                      .    .+.+.+...+. ..|++++||++|+|++++++++.+...
T Consensus       109 ~----~~~~~~~~~~~-~~p~~~~Sa~~g~gi~~l~~~l~~~~~  147 (158)
T PRK15467        109 A----ATRKLLLETGF-EEPIFELNSHDPQSVQQLVDYLASLTK  147 (158)
T ss_pred             H----HHHHHHHHcCC-CCCEEEEECCCccCHHHHHHHHHHhch
Confidence            2    23333333332 259999999999999999999987663

>cd04157 Arl6 Arl6 subfamily

Probab=99.64  E-value=3e-15  Score=98.82  Aligned_cols=136  Identities=13%  Similarity=0.193  Sum_probs=80.2

Q ss_pred             ChhcccCCCC-ceeccCCCCcceEEEEEEe-CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecC
Q 031293            1 MLNALTRQWG-VVRTSDKPGLTQTINFFKL-GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTK   78 (162)
Q Consensus         1 lin~L~~~~~-~~~~~~~~g~t~~~~~~~~-~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~   78 (162)
                      |+|+|++... .....++.|.+...  +.. +.++.++||||.          +.+......++   ..+|++++|+|++
T Consensus        15 l~~~l~~~~~~~~~~~~t~g~~~~~--~~~~~~~~~l~Dt~G~----------~~~~~~~~~~~---~~~d~ii~v~D~~   79 (162)
T cd04157          15 IINQLKPENAQSQIIVPTVGFNVES--FEKGNLSFTAFDMSGQ----------GKYRGLWEHYY---KNIQGIIFVIDSS   79 (162)
T ss_pred             HHHHHcccCCCcceecCccccceEE--EEECCEEEEEEECCCC----------HhhHHHHHHHH---ccCCEEEEEEeCC
Confidence            4677777521 23344555544322  222 445899999998          22233444444   3569999999998


Q ss_pred             CCCCccH-HHHHHHH-H-----HhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhc--CCCCCCeEEeecCCCCCHHHH
Q 031293           79 WGVKPRD-HELISLM-E-----RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKAN--NSLVQPVMMVSSKSGAGIRSL  149 (162)
Q Consensus        79 ~~~~~~~-~~~~~~l-~-----~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~Sa~~~~g~~~l  149 (162)
                      .+.+-.. ...+..+ .     ..++|+++|+||+|+.+.....    .+...++..  .....+++++||++|.|++++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~----~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~~  155 (162)
T cd04157          80 DRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTAV----KITQLLGLENIKDKPWHIFASNALTGEGLDEG  155 (162)
T ss_pred             cHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCHH----HHHHHhCCccccCceEEEEEeeCCCCCchHHH
Confidence            6432111 1122222 2     1368999999999987532221    122222211  112246899999999999999


Q ss_pred             HHHHHH
Q 031293          150 RTVLSK  155 (162)
Q Consensus       150 ~~~i~~  155 (162)
                      +++|.+
T Consensus       156 ~~~l~~  161 (162)
T cd04157         156 VQWLQA  161 (162)
T ss_pred             HHHHhc
Confidence            999864

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=99.63  E-value=3.9e-15  Score=100.61  Aligned_cols=136  Identities=18%  Similarity=0.186  Sum_probs=79.7

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEe-CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCC
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKL-GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW   79 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~-~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~   79 (162)
                      |+|+|.+. ..+.+.+..+.+  ...... +.++.++|+||+.          .+......++   ..++++++|+|+..
T Consensus        33 li~~l~~~-~~~~~~~t~~~~--~~~~~~~~~~~~~~D~~G~~----------~~~~~~~~~~---~~ad~ii~vvD~~~   96 (184)
T smart00178       33 LLHMLKND-RLAQHQPTQHPT--SEELAIGNIKFTTFDLGGHQ----------QARRLWKDYF---PEVNGIVYLVDAYD   96 (184)
T ss_pred             HHHHHhcC-CCcccCCccccc--eEEEEECCEEEEEEECCCCH----------HHHHHHHHHh---CCCCEEEEEEECCc
Confidence            45667665 233332222222  222222 4468999999982          2233344444   35699999999976


Q ss_pred             CC--CccHHHHHHHHH---HhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhc---------CCCCCCeEEeecCCCCC
Q 031293           80 GV--KPRDHELISLME---RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKAN---------NSLVQPVMMVSSKSGAG  145 (162)
Q Consensus        80 ~~--~~~~~~~~~~l~---~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~---------~~~~~~i~~~Sa~~~~g  145 (162)
                      +-  .....++...+.   ..++|+++|+||+|+......+    .+++.++..         +.+...++++||++|+|
T Consensus        97 ~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~----~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa~~~~g  172 (184)
T smart00178       97 KERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASED----ELRYALGLTNTTGSKGKVGVRPLEVFMCSVVRRMG  172 (184)
T ss_pred             HHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCHH----HHHHHcCCCcccccccccCCceeEEEEeecccCCC
Confidence            42  111112222322   1468999999999986322222    222222211         12346799999999999


Q ss_pred             HHHHHHHHHHh
Q 031293          146 IRSLRTVLSKI  156 (162)
Q Consensus       146 ~~~l~~~i~~~  156 (162)
                      ++++++||.+.
T Consensus       173 ~~~~~~wl~~~  183 (184)
T smart00178      173 YGEGFKWLSQY  183 (184)
T ss_pred             hHHHHHHHHhh
Confidence            99999999764

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]

Probab=99.62  E-value=1.3e-15  Score=112.99  Aligned_cols=150  Identities=22%  Similarity=0.240  Sum_probs=105.2

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT   77 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~   77 (162)
                      |+|+|.+. .++.||+.||||||.....+   |.++.++||+|..+....  .-+  ..-+.+..+....+|++++|+|+
T Consensus       284 LlNaL~~~-drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~--~iE--~~gI~rA~k~~~~advi~~vvda  358 (531)
T KOG1191|consen  284 LLNALSRE-DRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESND--GIE--ALGIERARKRIERADVILLVVDA  358 (531)
T ss_pred             HHHHHhcC-CceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCC--hhH--HHhHHHHHHHHhhcCEEEEEecc
Confidence            68999999 79999999999998876544   778999999999662111  111  22366666677788999999999


Q ss_pred             CCCCCccHHHHHHHHHHh------------CCceEEEEeccCCCCcH-HHHHHHHHHHHHHHhcCCCCCC-eEEeecCCC
Q 031293           78 KWGVKPRDHELISLMERS------------QTKYQVVLTKTDTVFPI-DVARRAMQIEESLKANNSLVQP-VMMVSSKSG  143 (162)
Q Consensus        78 ~~~~~~~~~~~~~~l~~~------------~~~~ivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~-i~~~Sa~~~  143 (162)
                      .+..+..+..+...+...            ..|+++++||+|+..+- +.......   .....+....+ +..+||+++
T Consensus       359 ~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~---~~~~~~~~~~~i~~~vs~~tk  435 (531)
T KOG1191|consen  359 EESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVV---YPSAEGRSVFPIVVEVSCTTK  435 (531)
T ss_pred             cccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCcee---ccccccCcccceEEEeeechh
Confidence            887777777777766542            25789999999998652 22110111   11111112234 445999999


Q ss_pred             CCHHHHHHHHHHhhh
Q 031293          144 AGIRSLRTVLSKIAR  158 (162)
Q Consensus       144 ~g~~~l~~~i~~~~~  158 (162)
                      +|++.|...+-+.+.
T Consensus       436 eg~~~L~~all~~~~  450 (531)
T KOG1191|consen  436 EGCERLSTALLNIVE  450 (531)
T ss_pred             hhHHHHHHHHHHHHH
Confidence            999999999987654

>cd01864 Rab19 Rab19 subfamily

Probab=99.62  E-value=2e-14  Score=95.36  Aligned_cols=108  Identities=16%  Similarity=0.146  Sum_probs=69.5

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHHHHHH---hCCceEEEEeccC
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTD  107 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~~l~~---~~~~~ivv~nK~D  107 (162)
                      ++.++||||+          +.+......++   +.+|++++++|+..+.+-.. ..++..+..   .++|+++|+||+|
T Consensus        53 ~l~i~D~~G~----------~~~~~~~~~~~---~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D  119 (165)
T cd01864          53 KLQIWDTAGQ----------ERFRTITQSYY---RSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCD  119 (165)
T ss_pred             EEEEEECCCh----------HHHHHHHHHHh---ccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcc
Confidence            5889999998          22333344443   34699999999987532222 233443433   3588999999999


Q ss_pred             CCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHh
Q 031293          108 TVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKI  156 (162)
Q Consensus       108 l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~  156 (162)
                      +.......  .+...+.....+  ...++++||++|.|+++++.++.+.
T Consensus       120 l~~~~~~~--~~~~~~~~~~~~--~~~~~e~Sa~~~~~v~~~~~~l~~~  164 (165)
T cd01864         120 LEEQREVL--FEEACTLAEKNG--MLAVLETSAKESQNVEEAFLLMATE  164 (165)
T ss_pred             cccccccC--HHHHHHHHHHcC--CcEEEEEECCCCCCHHHHHHHHHHh
Confidence            97443211  112223333332  2478999999999999999998754

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=99.62  E-value=5.5e-15  Score=99.02  Aligned_cols=135  Identities=19%  Similarity=0.186  Sum_probs=77.1

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEe-CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCC
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKL-GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW   79 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~-~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~   79 (162)
                      |+++|++.. .....++.|.+.  ..+.. +.++.++|+||.          +.+......++   ..+|++++|+|+.+
T Consensus        31 l~~~l~~~~-~~~~~~t~~~~~--~~~~~~~~~~~l~D~~G~----------~~~~~~~~~~~---~~~d~vi~V~D~s~   94 (174)
T cd04153          31 ILYQFLLGE-VVHTSPTIGSNV--EEIVYKNIRFLMWDIGGQ----------ESLRSSWNTYY---TNTDAVILVIDSTD   94 (174)
T ss_pred             HHHHHccCC-CCCcCCccccce--EEEEECCeEEEEEECCCC----------HHHHHHHHHHh---hcCCEEEEEEECCC
Confidence            356665442 222333333332  22223 446899999998          12223333333   45699999999976


Q ss_pred             CCC--ccHHHHHHHHHH---hCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhc--CCCCCCeEEeecCCCCCHHHHHHH
Q 031293           80 GVK--PRDHELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKAN--NSLVQPVMMVSSKSGAGIRSLRTV  152 (162)
Q Consensus        80 ~~~--~~~~~~~~~l~~---~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~Sa~~~~g~~~l~~~  152 (162)
                      +..  ....++...+..   .++|+++++||+|+......++    +.+.+...  .....+++++||++|.|+++++.+
T Consensus        95 ~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~~~~----i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e~~~~  170 (174)
T cd04153          95 RERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTPAE----ISESLGLTSIRDHTWHIQGCCALTGEGLPEGLDW  170 (174)
T ss_pred             HHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCCHHH----HHHHhCcccccCCceEEEecccCCCCCHHHHHHH
Confidence            421  111223333332   2589999999999864222222    22222211  112247899999999999999999


Q ss_pred             HHH
Q 031293          153 LSK  155 (162)
Q Consensus       153 i~~  155 (162)
                      |.+
T Consensus       171 l~~  173 (174)
T cd04153         171 IAS  173 (174)
T ss_pred             Hhc
Confidence            864

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>PRK09866 hypothetical protein; Provisional

Probab=99.61  E-value=2.2e-14  Score=110.45  Aligned_cols=118  Identities=19%  Similarity=0.097  Sum_probs=82.6

Q ss_pred             CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhC--CceEEEEeccC
Q 031293           30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQ--TKYQVVLTKTD  107 (162)
Q Consensus        30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~--~~~ivv~nK~D  107 (162)
                      ..++.++||||+.....     ......+.+.   ...+|.|++|+|+..+....+..+++.+...+  .|+++|+||+|
T Consensus       229 ~~QIIFVDTPGIhk~~~-----~~L~k~M~eq---L~eADvVLFVVDat~~~s~~DeeIlk~Lkk~~K~~PVILVVNKID  300 (741)
T PRK09866        229 PGQLTLLDTPGPNEAGQ-----PHLQKMLNQQ---LARASAVLAVLDYTQLKSISDEEVREAILAVGQSVPLYVLVNKFD  300 (741)
T ss_pred             cCCEEEEECCCCCCccc-----hHHHHHHHHH---HhhCCEEEEEEeCCCCCChhHHHHHHHHHhcCCCCCEEEEEEccc
Confidence            46799999999853211     1112223333   44569999999999878888888888888777  49999999999


Q ss_pred             CCCcHH--HHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHH
Q 031293          108 TVFPID--VARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSK  155 (162)
Q Consensus       108 l~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~  155 (162)
                      +.++..  .+...+.+...+.........++++||++|.|++.+++.|..
T Consensus       301 l~dreeddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~  350 (741)
T PRK09866        301 QQDRNSDDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN  350 (741)
T ss_pred             CCCcccchHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence            975322  223333333333332333468999999999999999999976

>cd01866 Rab2 Rab2 subfamily

Probab=99.61  E-value=2.6e-14  Score=95.18  Aligned_cols=139  Identities=14%  Similarity=0.094  Sum_probs=82.7

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEeC---CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKLG---TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT   77 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~~---~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~   77 (162)
                      |+|++++...........|.+........+   ..+.++||||.          +.+......++   +.+|++++++|+
T Consensus        20 Ll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~----------~~~~~~~~~~~---~~~d~il~v~d~   86 (168)
T cd01866          20 LLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQ----------ESFRSITRSYY---RGAAGALLVYDI   86 (168)
T ss_pred             HHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCc----------HHHHHHHHHHh---ccCCEEEEEEEC
Confidence            466776662212223334444333333333   25889999997          22233344443   456999999998


Q ss_pred             CCCCCccH-HHHHHHHHH---hCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHH
Q 031293           78 KWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVL  153 (162)
Q Consensus        78 ~~~~~~~~-~~~~~~l~~---~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i  153 (162)
                      ..+.+-.+ ..++..+..   .++|+++|.||+|+..+....  .+..+......+   .+++++||+.+.|+++++.++
T Consensus        87 ~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~--~~~~~~~~~~~~---~~~~e~Sa~~~~~i~~~~~~~  161 (168)
T cd01866          87 TRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVS--YEEGEAFAKEHG---LIFMETSAKTASNVEEAFINT  161 (168)
T ss_pred             CCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCC--HHHHHHHHHHcC---CEEEEEeCCCCCCHHHHHHHH
Confidence            75322222 123333333   258899999999987432211  122333333333   489999999999999999998


Q ss_pred             HHhh
Q 031293          154 SKIA  157 (162)
Q Consensus       154 ~~~~  157 (162)
                      .+.+
T Consensus       162 ~~~~  165 (168)
T cd01866         162 AKEI  165 (168)
T ss_pred             HHHH
Confidence            8765

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=99.61  E-value=8e-15  Score=96.51  Aligned_cols=137  Identities=16%  Similarity=0.132  Sum_probs=80.9

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEe-CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCC
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKL-GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW   79 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~-~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~   79 (162)
                      |+|++++.. .....+..|.+...  ... +..+.++|+||+.          .+......++.   .+|++++|+|+..
T Consensus        15 li~~~~~~~-~~~~~~t~~~~~~~--~~~~~~~~~i~D~~G~~----------~~~~~~~~~~~---~~~~~i~v~D~~~   78 (158)
T cd00878          15 ILYKLKLGE-VVTTIPTIGFNVET--VEYKNVSFTVWDVGGQD----------KIRPLWKHYYE---NTNGIIFVVDSSD   78 (158)
T ss_pred             HHHHHhcCC-CCCCCCCcCcceEE--EEECCEEEEEEECCCCh----------hhHHHHHHHhc---cCCEEEEEEECCC
Confidence            577888773 33333344433322  222 4469999999982          22333444433   3599999999986


Q ss_pred             CC--CccHHHHHHHHH---HhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHH
Q 031293           80 GV--KPRDHELISLME---RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLS  154 (162)
Q Consensus        80 ~~--~~~~~~~~~~l~---~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~  154 (162)
                      +-  ......+...+.   ..+.|+++|+||+|+.......+..+.+....  ......+++++||++|.|+++++.+|.
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Sa~~~~gv~~~~~~l~  156 (158)
T cd00878          79 RERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALSVSELIEKLGLEK--ILGRRWHIQPCSAVTGDGLDEGLDWLL  156 (158)
T ss_pred             HHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccCHHHHHHhhChhh--ccCCcEEEEEeeCCCCCCHHHHHHHHh
Confidence            42  111111222222   23689999999999975442322222221110  122346899999999999999999986


Q ss_pred             H
Q 031293          155 K  155 (162)
Q Consensus       155 ~  155 (162)
                      +
T Consensus       157 ~  157 (158)
T cd00878         157 Q  157 (158)
T ss_pred             h
Confidence            4

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=99.61  E-value=1.2e-14  Score=96.06  Aligned_cols=108  Identities=15%  Similarity=0.163  Sum_probs=69.4

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHHHHH----HhCCceEEEEecc
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLME----RSQTKYQVVLTKT  106 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~~l~----~~~~~~ivv~nK~  106 (162)
                      ++.++||||+          +.+..+...++.   .+|++++|+|+.+..+-.. ..+...+.    ..++|+++|+||+
T Consensus        51 ~~~i~Dt~G~----------~~~~~~~~~~~~---~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~  117 (164)
T cd04145          51 ILDILDTAGQ----------EEFSAMREQYMR---TGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKA  117 (164)
T ss_pred             EEEEEECCCC----------cchhHHHHHHHh---hCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCc
Confidence            4789999998          223444555554   3589999999876432111 11222222    2368999999999


Q ss_pred             CCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293          107 DTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  157 (162)
Q Consensus       107 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~  157 (162)
                      |+.++.....  +...+.....+   .+++++||++|.|++++++++.+.+
T Consensus       118 Dl~~~~~~~~--~~~~~~~~~~~---~~~~~~Sa~~~~~i~~l~~~l~~~~  163 (164)
T cd04145         118 DLEHQRKVSR--EEGQELARKLK---IPYIETSAKDRLNVDKAFHDLVRVI  163 (164)
T ss_pred             cccccceecH--HHHHHHHHHcC---CcEEEeeCCCCCCHHHHHHHHHHhh
Confidence            9875432211  12233333332   4899999999999999999998765

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=99.61  E-value=1.2e-14  Score=96.06  Aligned_cols=111  Identities=15%  Similarity=0.165  Sum_probs=67.3

Q ss_pred             CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCC--CccHHHHHHHHHH---hCCceEEEEe
Q 031293           30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV--KPRDHELISLMER---SQTKYQVVLT  104 (162)
Q Consensus        30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~--~~~~~~~~~~l~~---~~~~~ivv~n  104 (162)
                      +.++.++||||+.          .+......++   +.+|++++|+|+.+..  .....++...+..   .+.|++++.|
T Consensus        43 ~~~~~l~D~~G~~----------~~~~~~~~~~---~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~N  109 (159)
T cd04150          43 NISFTVWDVGGQD----------KIRPLWRHYF---QNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFAN  109 (159)
T ss_pred             CEEEEEEECCCCH----------hHHHHHHHHh---cCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEE
Confidence            3458999999982          2233344443   4459999999997632  2222222233322   2589999999


Q ss_pred             ccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHH
Q 031293          105 KTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSK  155 (162)
Q Consensus       105 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~  155 (162)
                      |+|+.+.....+..+.+.  +.....+.+.++++||++|.|+++++++|.+
T Consensus       110 K~Dl~~~~~~~~i~~~~~--~~~~~~~~~~~~~~Sak~g~gv~~~~~~l~~  158 (159)
T cd04150         110 KQDLPNAMSAAEVTDKLG--LHSLRNRNWYIQATCATSGDGLYEGLDWLSN  158 (159)
T ss_pred             CCCCCCCCCHHHHHHHhC--ccccCCCCEEEEEeeCCCCCCHHHHHHHHhc
Confidence            999864322222112210  1111122346788999999999999999864

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>cd04151 Arl1 Arl1 subfamily

Probab=99.60  E-value=1.4e-14  Score=95.52  Aligned_cols=109  Identities=18%  Similarity=0.200  Sum_probs=67.6

Q ss_pred             CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCC--ccHHHHHHHHHH---hCCceEEEEe
Q 031293           30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVK--PRDHELISLMER---SQTKYQVVLT  104 (162)
Q Consensus        30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~--~~~~~~~~~l~~---~~~~~ivv~n  104 (162)
                      +.++.++||||+          +.+......++   ..++++++|+|+..+.+  ....++...++.   .++|+++|+|
T Consensus        42 ~~~~~i~Dt~G~----------~~~~~~~~~~~---~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~n  108 (158)
T cd04151          42 NLKFQVWDLGGQ----------TSIRPYWRCYY---SNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFAN  108 (158)
T ss_pred             CEEEEEEECCCC----------HHHHHHHHHHh---cCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEe
Confidence            345899999998          12233333443   34699999999876421  112223333332   3689999999


Q ss_pred             ccCCCCcHHHHHHHHHHHHHHHhc--CCCCCCeEEeecCCCCCHHHHHHHHHH
Q 031293          105 KTDTVFPIDVARRAMQIEESLKAN--NSLVQPVMMVSSKSGAGIRSLRTVLSK  155 (162)
Q Consensus       105 K~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~Sa~~~~g~~~l~~~i~~  155 (162)
                      |+|+.......+    +.+.+...  .....+++++||++|.|+++++++|.+
T Consensus       109 K~Dl~~~~~~~~----i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  157 (158)
T cd04151         109 KQDMPGALSEAE----ISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMDWLVN  157 (158)
T ss_pred             CCCCCCCCCHHH----HHHHhCccccCCCcEEEEEeeccCCCCHHHHHHHHhc
Confidence            999864321211    22222211  111246999999999999999999864

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>cd01861 Rab6 Rab6 subfamily

Probab=99.60  E-value=1.9e-14  Score=94.88  Aligned_cols=136  Identities=15%  Similarity=0.155  Sum_probs=82.3

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEE--EEeC---CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEe
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINF--FKLG---TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLI   75 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~--~~~~---~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vi   75 (162)
                      |+|+|++. ... .+..|+.+.+...  ...+   .++.++||||.          +.+..++..++   +.++++++|+
T Consensus        16 li~~l~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~----------~~~~~~~~~~~---~~~~~ii~v~   80 (161)
T cd01861          16 IITRFMYD-TFD-NQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQ----------ERFRSLIPSYI---RDSSVAVVVY   80 (161)
T ss_pred             HHHHHHcC-CCC-ccCCCceeeeEEEEEEEECCEEEEEEEEECCCc----------HHHHHHHHHHh---ccCCEEEEEE
Confidence            57888877 333 2445555554433  2222   24889999998          22333444444   3459999999


Q ss_pred             ecCCCCCccH-HHHHHHH-HHh--CCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHH
Q 031293           76 DTKWGVKPRD-HELISLM-ERS--QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRT  151 (162)
Q Consensus        76 d~~~~~~~~~-~~~~~~l-~~~--~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~  151 (162)
                      |+..+.+-.. ..++..+ ...  +.|+++++||+|+........  +.........+   .+++++||+++.|+++++.
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~--~~~~~~~~~~~---~~~~~~Sa~~~~~v~~l~~  155 (161)
T cd01861          81 DITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVST--EEGEKKAKELN---AMFIETSAKAGHNVKELFR  155 (161)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCH--HHHHHHHHHhC---CEEEEEeCCCCCCHHHHHH
Confidence            9876422111 2233333 233  389999999999953322111  12222222222   5899999999999999999


Q ss_pred             HHHHh
Q 031293          152 VLSKI  156 (162)
Q Consensus       152 ~i~~~  156 (162)
                      ++.+.
T Consensus       156 ~i~~~  160 (161)
T cd01861         156 KIASA  160 (161)
T ss_pred             HHHHh
Confidence            99764

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>cd04149 Arf6 Arf6 subfamily

Probab=99.60  E-value=1.1e-14  Score=96.99  Aligned_cols=109  Identities=20%  Similarity=0.200  Sum_probs=68.2

Q ss_pred             CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCC--CccHHHHHHHHHH---hCCceEEEEe
Q 031293           30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV--KPRDHELISLMER---SQTKYQVVLT  104 (162)
Q Consensus        30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~--~~~~~~~~~~l~~---~~~~~ivv~n  104 (162)
                      +.++.++||||.          +.+......++.   .+|++++|+|+.+..  .....++.+.+..   .++|+++|.|
T Consensus        52 ~~~~~l~Dt~G~----------~~~~~~~~~~~~---~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~N  118 (168)
T cd04149          52 NVKFNVWDVGGQ----------DKIRPLWRHYYT---GTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFAN  118 (168)
T ss_pred             CEEEEEEECCCC----------HHHHHHHHHHhc---cCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEE
Confidence            345899999999          222333344433   469999999997642  2222222233332   2589999999


Q ss_pred             ccCCCCcHHHHHHHHHHHHHHHhc--CCCCCCeEEeecCCCCCHHHHHHHHHH
Q 031293          105 KTDTVFPIDVARRAMQIEESLKAN--NSLVQPVMMVSSKSGAGIRSLRTVLSK  155 (162)
Q Consensus       105 K~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~Sa~~~~g~~~l~~~i~~  155 (162)
                      |+|+.+....+    .+++.++..  .....+++++||++|.|+++++.+|.+
T Consensus       119 K~Dl~~~~~~~----~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~~~~~l~~  167 (168)
T cd04149         119 KQDLPDAMKPH----EIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLSS  167 (168)
T ss_pred             CcCCccCCCHH----HHHHHcCCCccCCCcEEEEEeeCCCCCChHHHHHHHhc
Confidence            99986422111    233332211  112347899999999999999999864

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>cd04124 RabL2 RabL2 subfamily

Probab=99.60  E-value=7.6e-14  Score=92.29  Aligned_cols=106  Identities=16%  Similarity=0.167  Sum_probs=70.8

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHHHHHHh--CCceEEEEeccCC
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS--QTKYQVVLTKTDT  108 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~~l~~~--~~~~ivv~nK~Dl  108 (162)
                      .+.++||||+          +.+..+...++.   .+|++++|+|+..+.+-.+ ..++..+...  ++|+++|+||+|+
T Consensus        50 ~~~i~Dt~G~----------~~~~~~~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl  116 (161)
T cd04124          50 LVDFWDTAGQ----------ERFQTMHASYYH---KAHACILVFDVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDL  116 (161)
T ss_pred             EEEEEeCCCc----------hhhhhhhHHHhC---CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccC
Confidence            4789999998          333444455543   4599999999876543222 2344555443  6899999999998


Q ss_pred             CCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293          109 VFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR  158 (162)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~  158 (162)
                      ... ...    ...+.....+   .+++++||++|.|++++++.+.+.+.
T Consensus       117 ~~~-~~~----~~~~~~~~~~---~~~~~~Sa~~~~gv~~l~~~l~~~~~  158 (161)
T cd04124         117 DPS-VTQ----KKFNFAEKHN---LPLYYVSAADGTNVVKLFQDAIKLAV  158 (161)
T ss_pred             chh-HHH----HHHHHHHHcC---CeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            532 111    1112222222   58999999999999999999987654

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>cd04158 ARD1 ARD1 subfamily

Probab=99.60  E-value=8.4e-15  Score=97.66  Aligned_cols=112  Identities=20%  Similarity=0.232  Sum_probs=69.0

Q ss_pred             CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCC--CCccHHHHHHHHHH---hCCceEEEEe
Q 031293           30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG--VKPRDHELISLMER---SQTKYQVVLT  104 (162)
Q Consensus        30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~--~~~~~~~~~~~l~~---~~~~~ivv~n  104 (162)
                      +.++.++||||...          +......++   +.+|++++|+|+..+  +.....++...+..   .+.|+++|.|
T Consensus        42 ~~~i~l~Dt~G~~~----------~~~~~~~~~---~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~N  108 (169)
T cd04158          42 NLKFTIWDVGGKHK----------LRPLWKHYY---LNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFAN  108 (169)
T ss_pred             CEEEEEEECCCChh----------cchHHHHHh---ccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEe
Confidence            44588999999822          122333443   345999999998764  22222222233322   2478999999


Q ss_pred             ccCCCCcHHHHHHHHHHHHHHHhcC---CCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293          105 KTDTVFPIDVARRAMQIEESLKANN---SLVQPVMMVSSKSGAGIRSLRTVLSKIAR  158 (162)
Q Consensus       105 K~Dl~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~  158 (162)
                      |+|+......++    +++.+....   .+...++++||++|.|+++++.+|.+.+.
T Consensus       109 K~Dl~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~l~~~~~  161 (169)
T cd04158         109 KQDVAGALSVEE----MTELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQLV  161 (169)
T ss_pred             CcCcccCCCHHH----HHHHhCCccccCCCcEEEEeCcCCCCCCHHHHHHHHHHHHh
Confidence            999864322222    222222111   11236788999999999999999987553

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>cd04168 TetM_like Tet(M)-like subfamily

Probab=99.59  E-value=2.7e-14  Score=99.98  Aligned_cols=115  Identities=24%  Similarity=0.309  Sum_probs=83.4

Q ss_pred             CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCC
Q 031293           30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV  109 (162)
Q Consensus        30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~  109 (162)
                      +.++.++||||+             ..+........+.+|++++|+|+..+.......++..+...++|+++++||+|+.
T Consensus        63 ~~~i~liDTPG~-------------~~f~~~~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~~~P~iivvNK~D~~  129 (237)
T cd04168          63 DTKVNLIDTPGH-------------MDFIAEVERSLSVLDGAILVISAVEGVQAQTRILWRLLRKLNIPTIIFVNKIDRA  129 (237)
T ss_pred             CEEEEEEeCCCc-------------cchHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccc
Confidence            557999999999             3333333444456699999999998887777777888888899999999999987


Q ss_pred             CcHHHHHHHHHHHHHHHhc----------------------------------------------------------CCC
Q 031293          110 FPIDVARRAMQIEESLKAN----------------------------------------------------------NSL  131 (162)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~----------------------------------------------------------~~~  131 (162)
                      ... ..+.++.+++.++..                                                          ...
T Consensus       130 ~a~-~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~~~  208 (237)
T cd04168         130 GAD-LEKVYQEIKEKLSSDIVPMQKVGLAPNICETNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAKRK  208 (237)
T ss_pred             CCC-HHHHHHHHHHHHCCCeEEEECCcEeeeeeeeeeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCC
Confidence            422 234444444433220                                                          112


Q ss_pred             CCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293          132 VQPVMMVSSKSGAGIRSLRTVLSKIAR  158 (162)
Q Consensus       132 ~~~i~~~Sa~~~~g~~~l~~~i~~~~~  158 (162)
                      ..|+++.||.++.|+..|++.|...++
T Consensus       209 ~~Pv~~gsa~~~~Gv~~ll~~~~~~~p  235 (237)
T cd04168         209 VFPVYHGSALKGIGIEELLEGITKLFP  235 (237)
T ss_pred             eEEEEEccccCCcCHHHHHHHHHHhcC
Confidence            368888899999999999999987654

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.59  E-value=5.3e-14  Score=100.75  Aligned_cols=131  Identities=24%  Similarity=0.338  Sum_probs=102.6

Q ss_pred             ccCCCCcceEEEEEEe----C--------CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCC
Q 031293           14 TSDKPGLTQTINFFKL----G--------TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV   81 (162)
Q Consensus        14 ~~~~~g~t~~~~~~~~----~--------~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~   81 (162)
                      .|...|.|.|+.+-.+    .        -++++||+|||             ..+++..+.+...+|.+++|+|...+.
T Consensus        41 qS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGH-------------asLIRtiiggaqiiDlm~lviDv~kG~  107 (522)
T KOG0461|consen   41 QSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGH-------------ASLIRTIIGGAQIIDLMILVIDVQKGK  107 (522)
T ss_pred             cccccceeEeecceeeecccccccCccccceeEEEeCCCc-------------HHHHHHHHhhhheeeeeeEEEehhccc
Confidence            5667888988887544    1        14799999999             889999999999999999999999999


Q ss_pred             CccHHHHHHHHHHhCCceEEEEeccCCCCcHHHHHH----HHHHHHHHHhcCC-CCCCeEEeecCCC----CCHHHHHHH
Q 031293           82 KPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARR----AMQIEESLKANNS-LVQPVMMVSSKSG----AGIRSLRTV  152 (162)
Q Consensus        82 ~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~----~~~~~~~~~~~~~-~~~~i~~~Sa~~~----~g~~~l~~~  152 (162)
                      ..+.-+++-.-.......++|+||+|...+......    ...+++-++..+. ...|++++||..|    +++.+|.+.
T Consensus       108 QtQtAEcLiig~~~c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~  187 (522)
T KOG0461|consen  108 QTQTAECLIIGELLCKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLESTGFDGNSPIVEVSAADGYFKEEMIQELKEA  187 (522)
T ss_pred             ccccchhhhhhhhhccceEEEEeccccccchhhhhHHHHHHHHHHHHHHhcCcCCCCceeEEecCCCccchhHHHHHHHH
Confidence            888888876666667789999999999876544333    3344444444332 3379999999999    889999998


Q ss_pred             HHHhh
Q 031293          153 LSKIA  157 (162)
Q Consensus       153 i~~~~  157 (162)
                      +.+.+
T Consensus       188 l~s~i  192 (522)
T KOG0461|consen  188 LESRI  192 (522)
T ss_pred             HHHhh
Confidence            88765

>PRK10218 GTP-binding protein; Provisional

Probab=99.59  E-value=4e-14  Score=110.33  Aligned_cols=129  Identities=18%  Similarity=0.156  Sum_probs=89.9

Q ss_pred             CCCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHH
Q 031293           16 DKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLM   92 (162)
Q Consensus        16 ~~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l   92 (162)
                      ...|.|.......+   +.++.+|||||+             ..+........+.+|++++|+|+.++...++..++..+
T Consensus        50 ~erGiTi~~~~~~i~~~~~~inliDTPG~-------------~df~~~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a  116 (607)
T PRK10218         50 KERGITILAKNTAIKWNDYRINIVDTPGH-------------ADFGGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKA  116 (607)
T ss_pred             ccCceEEEEEEEEEecCCEEEEEEECCCc-------------chhHHHHHHHHHhCCEEEEEEecccCccHHHHHHHHHH
Confidence            45667665544333   457999999999             33333333344567999999999988877777788887


Q ss_pred             HHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhc----CCCCCCeEEeecCCCC----------CHHHHHHHHHHhhh
Q 031293           93 ERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKAN----NSLVQPVMMVSSKSGA----------GIRSLRTVLSKIAR  158 (162)
Q Consensus        93 ~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~----~~~~~~i~~~Sa~~~~----------g~~~l~~~i~~~~~  158 (162)
                      ...++|.++++||+|+... .....++.+.+.+...    ....+|++++||.+|.          |+..|++.|.+.++
T Consensus       117 ~~~gip~IVviNKiD~~~a-~~~~vl~ei~~l~~~l~~~~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP  195 (607)
T PRK10218        117 FAYGLKPIVVINKVDRPGA-RPDWVVDQVFDLFVNLDATDEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVP  195 (607)
T ss_pred             HHcCCCEEEEEECcCCCCC-chhHHHHHHHHHHhccCccccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCC
Confidence            7789999999999998642 2333344454444321    1123689999999998          58888888877654

>PLN00223 ADP-ribosylation factor; Provisional

Probab=99.59  E-value=2.1e-14  Score=96.84  Aligned_cols=111  Identities=16%  Similarity=0.199  Sum_probs=70.3

Q ss_pred             CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCc--cHHHHHHHHHH---hCCceEEEEe
Q 031293           30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKP--RDHELISLMER---SQTKYQVVLT  104 (162)
Q Consensus        30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~--~~~~~~~~l~~---~~~~~ivv~n  104 (162)
                      +..+.++|+||+          +.+..+...+++   .+|++++|+|+++..+-  ...++...+..   .++|+++|+|
T Consensus        60 ~~~~~i~D~~Gq----------~~~~~~~~~~~~---~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~N  126 (181)
T PLN00223         60 NISFTVWDVGGQ----------DKIRPLWRHYFQ---NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFAN  126 (181)
T ss_pred             CEEEEEEECCCC----------HHHHHHHHHHhc---cCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEE
Confidence            345899999998          223444455543   45999999999864211  11122222222   2589999999


Q ss_pred             ccCCCCcHHHHHHHHHHHHHHHhcC--CCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293          105 KTDTVFPIDVARRAMQIEESLKANN--SLVQPVMMVSSKSGAGIRSLRTVLSKIA  157 (162)
Q Consensus       105 K~Dl~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~Sa~~~~g~~~l~~~i~~~~  157 (162)
                      |+|+.+....    +.+.+.++...  .+.+.++++||++|+|+++++++|.+.+
T Consensus       127 K~Dl~~~~~~----~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~  177 (181)
T PLN00223        127 KQDLPNAMNA----AEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI  177 (181)
T ss_pred             CCCCCCCCCH----HHHHHHhCccccCCCceEEEeccCCCCCCHHHHHHHHHHHH
Confidence            9998754332    23333333221  1223466799999999999999998765

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=99.59  E-value=4.3e-15  Score=109.93  Aligned_cols=128  Identities=23%  Similarity=0.296  Sum_probs=93.1

Q ss_pred             ccCCCCcceEEEEE----Ee--C--CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH
Q 031293           14 TSDKPGLTQTINFF----KL--G--TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD   85 (162)
Q Consensus        14 ~~~~~g~t~~~~~~----~~--~--~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~   85 (162)
                      .+..+|.|...+..    ..  +  ..+.++|||||             -+|..+..+.+..|.++++|+||..++..++
T Consensus        51 iERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGH-------------VDFsYEVSRSLAACEGalLvVDAsQGveAQT  117 (603)
T COG0481          51 IERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGH-------------VDFSYEVSRSLAACEGALLVVDASQGVEAQT  117 (603)
T ss_pred             hHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCc-------------cceEEEehhhHhhCCCcEEEEECccchHHHH
Confidence            45668888655532    22  1  34889999999             5555666666677799999999999987766


Q ss_pred             HHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293           86 HELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR  158 (162)
Q Consensus        86 ~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~  158 (162)
                      ..-.-..-+.+.-++-|+||+|+.. .+.+...+.+++.++..   ....+.+||++|.|+++++++|.+.++
T Consensus       118 lAN~YlAle~~LeIiPViNKIDLP~-Adpervk~eIe~~iGid---~~dav~~SAKtG~gI~~iLe~Iv~~iP  186 (603)
T COG0481         118 LANVYLALENNLEIIPVLNKIDLPA-ADPERVKQEIEDIIGID---ASDAVLVSAKTGIGIEDVLEAIVEKIP  186 (603)
T ss_pred             HHHHHHHHHcCcEEEEeeecccCCC-CCHHHHHHHHHHHhCCC---cchheeEecccCCCHHHHHHHHHhhCC
Confidence            5533233345788999999999984 33445556666665533   248899999999999999999988764

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=99.59  E-value=6.8e-14  Score=95.56  Aligned_cols=149  Identities=21%  Similarity=0.191  Sum_probs=93.4

Q ss_pred             ChhcccCCCCceeccCCCC---cceEEEEEEe--CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEe
Q 031293            1 MLNALTRQWGVVRTSDKPG---LTQTINFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLI   75 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g---~t~~~~~~~~--~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vi   75 (162)
                      |+|+|++.......+...|   +|+....+..  ...+.++||||++......      +.+++..  ....+|+++++.
T Consensus        17 Lin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~------~~~l~~~--~~~~~d~~l~v~   88 (197)
T cd04104          17 FINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPP------DDYLEEM--KFSEYDFFIIIS   88 (197)
T ss_pred             HHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCH------HHHHHHh--CccCcCEEEEEe
Confidence            5899988632111121222   3444443432  2368999999997643221      2222221  234568888874


Q ss_pred             ecCCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcHH---------HHHHHHHHH----HHHHhcCCCCCCeEEeecC-
Q 031293           76 DTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPID---------VARRAMQIE----ESLKANNSLVQPVMMVSSK-  141 (162)
Q Consensus        76 d~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~---------~~~~~~~~~----~~~~~~~~~~~~i~~~Sa~-  141 (162)
                      +  .+++..+..+++.+...+.|+++|+||+|+.....         .++.++.++    +.+...+....+++.+|+. 
T Consensus        89 ~--~~~~~~d~~~~~~l~~~~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~p~v~~vS~~~  166 (197)
T cd04104          89 S--TRFSSNDVKLAKAIQCMGKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAGVSEPPVFLVSNFD  166 (197)
T ss_pred             C--CCCCHHHHHHHHHHHHhCCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCC
Confidence            3  35777888888888888899999999999863222         123333333    3343334455699999998 


Q ss_pred             -CCCCHHHHHHHHHHhhhh
Q 031293          142 -SGAGIRSLRTVLSKIARF  159 (162)
Q Consensus       142 -~~~g~~~l~~~i~~~~~~  159 (162)
                       .+.|+..|.+.|...++.
T Consensus       167 ~~~~~~~~l~~~~~~~l~~  185 (197)
T cd04104         167 PSDYDFPKLRETLLKDLPA  185 (197)
T ss_pred             hhhcChHHHHHHHHHHhhH
Confidence             679999999999887763

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>cd01860 Rab5_related Rab5-related subfamily

Probab=99.59  E-value=4.1e-14  Score=93.51  Aligned_cols=139  Identities=15%  Similarity=0.139  Sum_probs=82.6

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT   77 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~   77 (162)
                      |+|+|++........+.+|.+........   +.++.++|+||.          +.+......++   +.+|++++++|+
T Consensus        17 li~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~----------~~~~~~~~~~~---~~~~~~i~v~d~   83 (163)
T cd01860          17 LVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQ----------ERYRSLAPMYY---RGAAAAIVVYDI   83 (163)
T ss_pred             HHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCch----------HHHHHHHHHHh---ccCCEEEEEEEC
Confidence            56888877322224445554332222233   335889999998          22233333333   346999999998


Q ss_pred             CCCCCc-cHHHHHHHHHHh---CCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHH
Q 031293           78 KWGVKP-RDHELISLMERS---QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVL  153 (162)
Q Consensus        78 ~~~~~~-~~~~~~~~l~~~---~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i  153 (162)
                      ..+.+- ....++..+...   ++|+++++||+|+.+.....  .+...+.....+   .+++++||++|.|++++++++
T Consensus        84 ~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~--~~~~~~~~~~~~---~~~~~~Sa~~~~~v~~l~~~l  158 (163)
T cd01860          84 TSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVS--TEEAQEYADENG---LLFFETSAKTGENVNELFTEI  158 (163)
T ss_pred             cCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCC--HHHHHHHHHHcC---CEEEEEECCCCCCHHHHHHHH
Confidence            754211 112233333322   47899999999987422111  112223333333   589999999999999999999


Q ss_pred             HHhh
Q 031293          154 SKIA  157 (162)
Q Consensus       154 ~~~~  157 (162)
                      .+.+
T Consensus       159 ~~~l  162 (163)
T cd01860         159 AKKL  162 (163)
T ss_pred             HHHh
Confidence            8764

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>cd01893 Miro1 Miro1 subfamily

Probab=99.58  E-value=3.5e-14  Score=94.38  Aligned_cols=114  Identities=11%  Similarity=0.064  Sum_probs=69.8

Q ss_pred             CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHH--HHHHHHHH--hCCceEEEEec
Q 031293           30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDH--ELISLMER--SQTKYQVVLTK  105 (162)
Q Consensus        30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~--~~~~~l~~--~~~~~ivv~nK  105 (162)
                      +.++.++||||.+..          ...+..++   ..+|++++++|...+.+-...  .+...+..  .+.|+++|+||
T Consensus        46 ~~~~~i~Dt~G~~~~----------~~~~~~~~---~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK  112 (166)
T cd01893          46 RVPTTIVDTSSRPQD----------RANLAAEI---RKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNK  112 (166)
T ss_pred             eEEEEEEeCCCchhh----------hHHHhhhc---ccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEc
Confidence            345889999998321          22223333   456999999998765433221  23344433  26899999999


Q ss_pred             cCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293          106 TDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  157 (162)
Q Consensus       106 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~  157 (162)
                      +|+.+........+.+........ ...+++++||++|.|++++++.+...+
T Consensus       113 ~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~Sa~~~~~v~~lf~~~~~~~  163 (166)
T cd01893         113 SDLRDGSSQAGLEEEMLPIMNEFR-EIETCVECSAKTLINVSEVFYYAQKAV  163 (166)
T ss_pred             hhcccccchhHHHHHHHHHHHHHh-cccEEEEeccccccCHHHHHHHHHHHh
Confidence            999754432111111211111111 113799999999999999999988654

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04127 Rab27A Rab27a subfamily

Probab=99.58  E-value=5.9e-14  Score=94.32  Aligned_cols=108  Identities=15%  Similarity=0.146  Sum_probs=70.1

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHH-HHHHHHHH----hCCceEEEEecc
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDH-ELISLMER----SQTKYQVVLTKT  106 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~-~~~~~l~~----~~~~~ivv~nK~  106 (162)
                      ++.+|||||.          +.+......++   +.+|++++|.|.....+-.+. .++..+..    .+.|+++|.||+
T Consensus        64 ~~~i~Dt~G~----------~~~~~~~~~~~---~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~  130 (180)
T cd04127          64 HLQLWDTAGQ----------ERFRSLTTAFF---RDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKA  130 (180)
T ss_pred             EEEEEeCCCh----------HHHHHHHHHHh---CCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCc
Confidence            4789999998          23344444454   356999999998764222221 23333333    257899999999


Q ss_pred             CCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293          107 DTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  157 (162)
Q Consensus       107 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~  157 (162)
                      |+.+......  +...+.....+   .+++++||++|.|+++++++|.+.+
T Consensus       131 Dl~~~~~v~~--~~~~~~~~~~~---~~~~e~Sak~~~~v~~l~~~l~~~~  176 (180)
T cd04127         131 DLEDQRQVSE--EQAKALADKYG---IPYFETSAATGTNVEKAVERLLDLV  176 (180)
T ss_pred             cchhcCccCH--HHHHHHHHHcC---CeEEEEeCCCCCCHHHHHHHHHHHH
Confidence            9975332211  12333333333   4899999999999999999998754

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>cd04106 Rab23_lke Rab23-like subfamily

Probab=99.58  E-value=5.6e-14  Score=92.78  Aligned_cols=107  Identities=19%  Similarity=0.189  Sum_probs=68.8

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHHHHHH--hCCceEEEEeccCC
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER--SQTKYQVVLTKTDT  108 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~~l~~--~~~~~ivv~nK~Dl  108 (162)
                      ++.++||||.          +.+......+++   .++++++|.|..++-+-.. ..++..+..  .++|+++|+||+|+
T Consensus        52 ~~~i~D~~G~----------~~~~~~~~~~~~---~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl  118 (162)
T cd04106          52 RLMLWDTAGQ----------EEFDAITKAYYR---GAQACILVFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDL  118 (162)
T ss_pred             EEEEeeCCch----------HHHHHhHHHHhc---CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhc
Confidence            5889999997          333444455543   4589999999875422111 122233322  36899999999999


Q ss_pred             CCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHh
Q 031293          109 VFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKI  156 (162)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~  156 (162)
                      ..+.....  +.........+   .+++++||++|.|+++++++|.+.
T Consensus       119 ~~~~~v~~--~~~~~~~~~~~---~~~~~~Sa~~~~~v~~l~~~l~~~  161 (162)
T cd04106         119 LDQAVITN--EEAEALAKRLQ---LPLFRTSVKDDFNVTELFEYLAEK  161 (162)
T ss_pred             ccccCCCH--HHHHHHHHHcC---CeEEEEECCCCCCHHHHHHHHHHh
Confidence            75433211  12222333332   489999999999999999998753

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=99.58  E-value=7.8e-14  Score=92.57  Aligned_cols=108  Identities=14%  Similarity=0.161  Sum_probs=69.2

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHHHHHH---hCCceEEEEeccC
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTD  107 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~~l~~---~~~~~ivv~nK~D  107 (162)
                      ++.++||||+          +.+......++   +.+|++++++|+.+.-+-.. ..++..+..   .+.|+++|.||+|
T Consensus        52 ~~~i~D~~G~----------~~~~~~~~~~~---~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~D  118 (166)
T cd01869          52 KLQIWDTAGQ----------ERFRTITSSYY---RGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCD  118 (166)
T ss_pred             EEEEEECCCc----------HhHHHHHHHHh---CcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChh
Confidence            5889999998          22333444443   35699999999876321111 122333332   2579999999999


Q ss_pred             CCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293          108 TVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  157 (162)
Q Consensus       108 l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~  157 (162)
                      +........  +.........+   .+++++||++|.|+++++.+|.+.+
T Consensus       119 l~~~~~~~~--~~~~~~~~~~~---~~~~~~Sa~~~~~v~~~~~~i~~~~  163 (166)
T cd01869         119 LTDKRVVDY--SEAQEFADELG---IPFLETSAKNATNVEQAFMTMAREI  163 (166)
T ss_pred             cccccCCCH--HHHHHHHHHcC---CeEEEEECCCCcCHHHHHHHHHHHH
Confidence            864332211  12222233222   4899999999999999999998765

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=99.58  E-value=7.3e-14  Score=91.99  Aligned_cols=107  Identities=16%  Similarity=0.150  Sum_probs=67.5

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHH-HHHHHHH----HhCCceEEEEecc
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDH-ELISLME----RSQTKYQVVLTKT  106 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~-~~~~~l~----~~~~~~ivv~nK~  106 (162)
                      .+.+|||||.          +.+..+...++..   ++++++++|.....+-... .+...+.    ..++|+++|+||+
T Consensus        50 ~~~i~Dt~G~----------~~~~~l~~~~~~~---~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~  116 (162)
T cd04138          50 LLDILDTAGQ----------EEYSAMRDQYMRT---GEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKC  116 (162)
T ss_pred             EEEEEECCCC----------cchHHHHHHHHhc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECc
Confidence            3678999998          2334555556544   4888888887643211111 1222222    2368999999999


Q ss_pred             CCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293          107 DTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  157 (162)
Q Consensus       107 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~  157 (162)
                      |+........   ...+.....+   .+++++||++|.|++++++++.+.+
T Consensus       117 Dl~~~~~~~~---~~~~~~~~~~---~~~~~~Sa~~~~gi~~l~~~l~~~~  161 (162)
T cd04138         117 DLAARTVSSR---QGQDLAKSYG---IPYIETSAKTRQGVEEAFYTLVREI  161 (162)
T ss_pred             ccccceecHH---HHHHHHHHhC---CeEEEecCCCCCCHHHHHHHHHHHh
Confidence            9975322211   2222223222   4899999999999999999998654

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>cd01868 Rab11_like Rab11-like

Probab=99.58  E-value=1e-13  Score=91.88  Aligned_cols=139  Identities=14%  Similarity=0.120  Sum_probs=80.7

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEeC---CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKLG---TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT   77 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~~---~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~   77 (162)
                      |+|+|++........+..|.+........+   .++.++|+||.          +.+......++   +.+++++++.|+
T Consensus        19 li~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~----------~~~~~~~~~~~---~~~~~~i~v~d~   85 (165)
T cd01868          19 LLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQ----------ERYRAITSAYY---RGAVGALLVYDI   85 (165)
T ss_pred             HHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCh----------HHHHHHHHHHH---CCCCEEEEEEEC
Confidence            577887773222223333322222222222   24889999998          22344444444   345899999998


Q ss_pred             CCCCCccH-HHHHHHHHH---hCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHH
Q 031293           78 KWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVL  153 (162)
Q Consensus        78 ~~~~~~~~-~~~~~~l~~---~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i  153 (162)
                      .++.+-.. ..++..+..   .+.|+++|+||+|+.......  .+...+.....+   .+++++||++|.|++++++++
T Consensus        86 ~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~--~~~~~~~~~~~~---~~~~~~Sa~~~~~v~~l~~~l  160 (165)
T cd01868          86 TKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVP--TEEAKAFAEKNG---LSFIETSALDGTNVEEAFKQL  160 (165)
T ss_pred             cCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCC--HHHHHHHHHHcC---CEEEEEECCCCCCHHHHHHHH
Confidence            75332211 123333332   248999999999987432211  112333333222   489999999999999999998


Q ss_pred             HHhh
Q 031293          154 SKIA  157 (162)
Q Consensus       154 ~~~~  157 (162)
                      .+.+
T Consensus       161 ~~~i  164 (165)
T cd01868         161 LTEI  164 (165)
T ss_pred             HHHh
Confidence            7653

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=99.57  E-value=3.5e-14  Score=95.89  Aligned_cols=110  Identities=16%  Similarity=0.184  Sum_probs=67.4

Q ss_pred             CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHH----HHHHHhCCceEEEEec
Q 031293           31 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELI----SLMERSQTKYQVVLTK  105 (162)
Q Consensus        31 ~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~----~~l~~~~~~~ivv~nK  105 (162)
                      ..+.++||||.          +.+......++   +++|++++|+|+..+-+... ...+    ......++|+++|+||
T Consensus        52 ~~l~l~Dt~G~----------~~~~~~~~~~~---~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK  118 (183)
T cd04152          52 ITFHFWDVGGQ----------EKLRPLWKSYT---RCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANK  118 (183)
T ss_pred             eEEEEEECCCc----------HhHHHHHHHHh---ccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEEC
Confidence            35899999998          22233333443   45699999999876421111 1111    2222346899999999


Q ss_pred             cCCCCcHHHHHHHHHHHHHHHhc---CCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293          106 TDTVFPIDVARRAMQIEESLKAN---NSLVQPVMMVSSKSGAGIRSLRTVLSKIA  157 (162)
Q Consensus       106 ~Dl~~~~~~~~~~~~~~~~~~~~---~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~  157 (162)
                      +|+.......    .+...+...   .....+++++||++|.|+++++.+|.+.+
T Consensus       119 ~D~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~l~~~l  169 (183)
T cd04152         119 QDLPNALSVS----EVEKLLALHELSASTPWHVQPACAIIGEGLQEGLEKLYEMI  169 (183)
T ss_pred             cCccccCCHH----HHHHHhCccccCCCCceEEEEeecccCCCHHHHHHHHHHHH
Confidence            9986321111    122222211   11124688999999999999999998755

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>cd04120 Rab12 Rab12 subfamily

Probab=99.57  E-value=1.1e-13  Score=94.66  Aligned_cols=109  Identities=17%  Similarity=0.174  Sum_probs=71.3

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHH-HHHHHHHH---hCCceEEEEeccC
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDH-ELISLMER---SQTKYQVVLTKTD  107 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~-~~~~~l~~---~~~~~ivv~nK~D  107 (162)
                      ++.+|||||.          +.+..+...|++   ++|++++|.|....-+-... .++..+..   .++|+++|.||+|
T Consensus        50 ~l~iwDtaGq----------e~~~~l~~~y~~---~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~D  116 (202)
T cd04120          50 RLQIWDTAGQ----------ERFNSITSAYYR---SAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLD  116 (202)
T ss_pred             EEEEEeCCCc----------hhhHHHHHHHhc---CCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcc
Confidence            4789999998          334455556654   45999999998764322221 23344443   2588999999999


Q ss_pred             CCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293          108 TVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  157 (162)
Q Consensus       108 l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~  157 (162)
                      +....++..  +..++......  ..+++.+||++|.|+++++.++.+.+
T Consensus       117 L~~~~~v~~--~~~~~~a~~~~--~~~~~etSAktg~gV~e~F~~l~~~~  162 (202)
T cd04120         117 CETDREISR--QQGEKFAQQIT--GMRFCEASAKDNFNVDEIFLKLVDDI  162 (202)
T ss_pred             cccccccCH--HHHHHHHHhcC--CCEEEEecCCCCCCHHHHHHHHHHHH
Confidence            964333221  12222222221  14799999999999999999998754

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=99.57  E-value=3.2e-14  Score=101.30  Aligned_cols=111  Identities=20%  Similarity=0.220  Sum_probs=80.3

Q ss_pred             CCCCcceEEEEEE--e-CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHH
Q 031293           16 DKPGLTQTINFFK--L-GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLM   92 (162)
Q Consensus        16 ~~~g~t~~~~~~~--~-~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l   92 (162)
                      ..+|+|.+.....  + +.++.++||||+             ..+..+.....+.+|++++|+|+..+....+..++..+
T Consensus        46 ~~rgiti~~~~~~~~~~~~~i~liDTPG~-------------~df~~~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~  112 (270)
T cd01886          46 RERGITIQSAATTCFWKDHRINIIDTPGH-------------VDFTIEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQA  112 (270)
T ss_pred             cCCCcCeeccEEEEEECCEEEEEEECCCc-------------HHHHHHHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHH
Confidence            4667777655433  2 567999999999             45555666666777999999999998888888888888


Q ss_pred             HHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCC
Q 031293           93 ERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKS  142 (162)
Q Consensus        93 ~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~  142 (162)
                      ...++|+++++||+|+.... .....+.+++.++..  ....++|+|+..
T Consensus       113 ~~~~~p~ivviNK~D~~~a~-~~~~~~~l~~~l~~~--~~~~~~Pisa~~  159 (270)
T cd01886         113 DRYNVPRIAFVNKMDRTGAD-FFRVVEQIREKLGAN--PVPLQLPIGEED  159 (270)
T ss_pred             HHcCCCEEEEEECCCCCCCC-HHHHHHHHHHHhCCC--ceEEEeccccCC
Confidence            88899999999999987432 334455666655433  223567777753

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=99.57  E-value=1e-13  Score=92.58  Aligned_cols=111  Identities=15%  Similarity=0.117  Sum_probs=69.2

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCcc-HHHHHHHHHHh----CCceEEEEecc
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPR-DHELISLMERS----QTKYQVVLTKT  106 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~-~~~~~~~l~~~----~~~~ivv~nK~  106 (162)
                      ++.++||||.          +.+......++   +.+|++++|.|+...-+-. ...++..+...    ..|+++|.||+
T Consensus        50 ~l~i~Dt~G~----------~~~~~~~~~~~---~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~  116 (170)
T cd04108          50 SLQLWDTAGQ----------ERFKCIASTYY---RGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKK  116 (170)
T ss_pred             EEEEEeCCCh----------HHHHhhHHHHh---cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEECh
Confidence            5889999998          22333333443   4569999999997532111 12233333222    25689999999


Q ss_pred             CCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293          107 DTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR  158 (162)
Q Consensus       107 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~  158 (162)
                      |+.+........+...+.....+   .+++++||++|.|+++++..|.+++.
T Consensus       117 Dl~~~~~~~~~~~~~~~~~~~~~---~~~~e~Sa~~g~~v~~lf~~l~~~~~  165 (170)
T cd04108         117 DLSSPAQYALMEQDAIKLAAEMQ---AEYWSVSALSGENVREFFFRVAALTF  165 (170)
T ss_pred             hcCccccccccHHHHHHHHHHcC---CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            98654332111122222233222   47899999999999999999988764

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=99.57  E-value=1.1e-13  Score=91.74  Aligned_cols=108  Identities=16%  Similarity=0.131  Sum_probs=67.8

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHHHHHH--------hCCceEEE
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER--------SQTKYQVV  102 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~~l~~--------~~~~~ivv  102 (162)
                      .+.++||||.          +.+......++   +.++++++++|.+.+.+-.. ..++..+..        .+.|+++|
T Consensus        50 ~l~i~Dt~G~----------~~~~~~~~~~~---~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv  116 (168)
T cd04119          50 RVNFFDLSGH----------PEYLEVRNEFY---KDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVC  116 (168)
T ss_pred             EEEEEECCcc----------HHHHHHHHHHh---ccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEE
Confidence            5889999998          22233344443   34699999999876422111 123333322        24789999


Q ss_pred             EeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293          103 LTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  157 (162)
Q Consensus       103 ~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~  157 (162)
                      +||+|+..+.....  +..+......+   .+++++||++|.|+++++++|.+.+
T Consensus       117 ~nK~Dl~~~~~~~~--~~~~~~~~~~~---~~~~~~Sa~~~~gi~~l~~~l~~~l  166 (168)
T cd04119         117 ANKIDLTKHRAVSE--DEGRLWAESKG---FKYFETSACTGEGVNEMFQTLFSSI  166 (168)
T ss_pred             EEchhcccccccCH--HHHHHHHHHcC---CeEEEEECCCCCCHHHHHHHHHHHH
Confidence            99999973221111  11222223222   4899999999999999999998653

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=99.57  E-value=6e-14  Score=94.10  Aligned_cols=111  Identities=19%  Similarity=0.193  Sum_probs=69.0

Q ss_pred             CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCC--CccHHHHHHHHHH---hCCceEEEEe
Q 031293           30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV--KPRDHELISLMER---SQTKYQVVLT  104 (162)
Q Consensus        30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~--~~~~~~~~~~l~~---~~~~~ivv~n  104 (162)
                      +.++.++||||.          +.+......++   +.+|++++|+|+.++.  .....++...+..   .++|+++|+|
T Consensus        56 ~~~l~l~D~~G~----------~~~~~~~~~~~---~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~N  122 (175)
T smart00177       56 NISFTVWDVGGQ----------DKIRPLWRHYY---TNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFAN  122 (175)
T ss_pred             CEEEEEEECCCC----------hhhHHHHHHHh---CCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEe
Confidence            345889999998          22233444554   3459999999987642  1112222223322   2579999999


Q ss_pred             ccCCCCcHHHHHHHHHHHHHHHhc--CCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293          105 KTDTVFPIDVARRAMQIEESLKAN--NSLVQPVMMVSSKSGAGIRSLRTVLSKIA  157 (162)
Q Consensus       105 K~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~  157 (162)
                      |.|+.+.....    .+.+.++..  ..+.+.++++||++|.|+++++++|.+.+
T Consensus       123 K~Dl~~~~~~~----~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~  173 (175)
T smart00177      123 KQDLPDAMKAA----EITEKLGLHSIRDRNWYIQPTCATSGDGLYEGLTWLSNNL  173 (175)
T ss_pred             CcCcccCCCHH----HHHHHhCccccCCCcEEEEEeeCCCCCCHHHHHHHHHHHh
Confidence            99986432222    222222211  12234577899999999999999998764

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>cd00154 Rab Rab family

Probab=99.57  E-value=6.3e-14  Score=91.73  Aligned_cols=136  Identities=15%  Similarity=0.115  Sum_probs=80.4

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT   77 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~   77 (162)
                      |+|+|++........+..+.+........   ...+.++|+||+          +.+......++   ..+|++++++|+
T Consensus        16 l~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~----------~~~~~~~~~~~---~~~d~ii~v~d~   82 (159)
T cd00154          16 LLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQ----------ERFRSITPSYY---RGAHGAILVYDI   82 (159)
T ss_pred             HHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCCh----------HHHHHHHHHHh---cCCCEEEEEEEC
Confidence            46777766322222334444333333332   235889999998          22233344443   346999999999


Q ss_pred             CCCCCccH-HHHHHHHHHh---CCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHH
Q 031293           78 KWGVKPRD-HELISLMERS---QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVL  153 (162)
Q Consensus        78 ~~~~~~~~-~~~~~~l~~~---~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i  153 (162)
                      ..+.+... ..++..+...   +.|+++++||+|+..+....  .+.+++.....   ..+++.+||.++.|+++++.+|
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~--~~~~~~~~~~~---~~~~~~~sa~~~~~i~~~~~~i  157 (159)
T cd00154          83 TNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVS--TEEAQQFAKEN---GLLFFETSAKTGENVEELFQSL  157 (159)
T ss_pred             CCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEccccccccccc--HHHHHHHHHHc---CCeEEEEecCCCCCHHHHHHHH
Confidence            76321111 2233344333   48999999999996222111  12333333332   2589999999999999999988


Q ss_pred             H
Q 031293          154 S  154 (162)
Q Consensus       154 ~  154 (162)
                      .
T Consensus       158 ~  158 (159)
T cd00154         158 A  158 (159)
T ss_pred             h
Confidence            5

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>smart00175 RAB Rab subfamily of small GTPases

Probab=99.57  E-value=9.8e-14  Score=91.68  Aligned_cols=108  Identities=15%  Similarity=0.148  Sum_probs=69.9

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHH-HHHHHHHH---hCCceEEEEeccC
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDH-ELISLMER---SQTKYQVVLTKTD  107 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~-~~~~~l~~---~~~~~ivv~nK~D  107 (162)
                      ++.++|+||.          +.+......++   +.+|++++++|+..+.+.... .++..+..   .++|+++|+||+|
T Consensus        50 ~~~l~D~~G~----------~~~~~~~~~~~---~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D  116 (164)
T smart00175       50 KLQIWDTAGQ----------ERFRSITSSYY---RGAVGALLVYDITNRESFENLKNWLKELREYADPNVVIMLVGNKSD  116 (164)
T ss_pred             EEEEEECCCh----------HHHHHHHHHHh---CCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchh
Confidence            5789999998          22333344444   346999999999764322221 13333322   3589999999999


Q ss_pred             CCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293          108 TVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  157 (162)
Q Consensus       108 l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~  157 (162)
                      +.......  .+..++.....+   .+++++||.+|.|+++++++|.+.+
T Consensus       117 ~~~~~~~~--~~~~~~~~~~~~---~~~~e~Sa~~~~~i~~l~~~i~~~~  161 (164)
T smart00175      117 LEDQRQVS--REEAEAFAEEHG---LPFFETSAKTNTNVEEAFEELAREI  161 (164)
T ss_pred             cccccCCC--HHHHHHHHHHcC---CeEEEEeCCCCCCHHHHHHHHHHHH
Confidence            87432211  112222333333   4799999999999999999998765

Rab GTPases are implicated in vesicle trafficking.

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=99.57  E-value=1.2e-13  Score=94.59  Aligned_cols=109  Identities=16%  Similarity=0.158  Sum_probs=70.4

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHH-HHHHHHH-------HhCCceEEEE
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDH-ELISLME-------RSQTKYQVVL  103 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~-~~~~~l~-------~~~~~~ivv~  103 (162)
                      .+.+|||||.          +.+..+...+++   +++++++|+|...+.+-... .++..+.       ..++|+++|+
T Consensus        51 ~l~l~Dt~G~----------~~~~~~~~~~~~---~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~  117 (201)
T cd04107          51 RLQLWDIAGQ----------ERFGGMTRVYYR---GAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLA  117 (201)
T ss_pred             EEEEEECCCc----------hhhhhhHHHHhC---CCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEE
Confidence            4789999998          223444455543   45999999998764221111 1222222       1358999999


Q ss_pred             eccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293          104 TKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  157 (162)
Q Consensus       104 nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~  157 (162)
                      ||+|+.+.....  .+.+.+.+...+  ..+++++||++|.|+++++.+|.+.+
T Consensus       118 NK~Dl~~~~~~~--~~~~~~~~~~~~--~~~~~e~Sak~~~~v~e~f~~l~~~l  167 (201)
T cd04107         118 NKCDLKKRLAKD--GEQMDQFCKENG--FIGWFETSAKEGINIEEAMRFLVKNI  167 (201)
T ss_pred             ECCCcccccccC--HHHHHHHHHHcC--CceEEEEeCCCCCCHHHHHHHHHHHH
Confidence            999996322111  123334444443  24899999999999999999998755

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04113 Rab4 Rab4 subfamily

Probab=99.57  E-value=5.7e-14  Score=92.73  Aligned_cols=107  Identities=14%  Similarity=0.119  Sum_probs=69.4

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHHHHH---HhCCceEEEEeccC
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLME---RSQTKYQVVLTKTD  107 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~~l~---~~~~~~ivv~nK~D  107 (162)
                      .+.++|+||+          +.+......++   +.+|++++++|+.++.+... ..++..+.   ..++|+++|.||+|
T Consensus        50 ~l~l~D~~G~----------~~~~~~~~~~~---~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D  116 (161)
T cd04113          50 KLQIWDTAGQ----------ERFRSVTRSYY---RGAAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSD  116 (161)
T ss_pred             EEEEEECcch----------HHHHHhHHHHh---cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchh
Confidence            4789999998          22233334443   45699999999987432222 22333332   23689999999999


Q ss_pred             CCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHh
Q 031293          108 TVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKI  156 (162)
Q Consensus       108 l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~  156 (162)
                      +.......  .+.........+   .+++.+||+++.|++++++++.+.
T Consensus       117 ~~~~~~~~--~~~~~~~~~~~~---~~~~~~Sa~~~~~i~~~~~~~~~~  160 (161)
T cd04113         117 LADQREVT--FLEASRFAQENG---LLFLETSALTGENVEEAFLKCARS  160 (161)
T ss_pred             cchhccCC--HHHHHHHHHHcC---CEEEEEECCCCCCHHHHHHHHHHh
Confidence            97432211  122233333333   589999999999999999998764

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>cd01863 Rab18 Rab18 subfamily

Probab=99.57  E-value=1.1e-13  Score=91.25  Aligned_cols=137  Identities=15%  Similarity=0.123  Sum_probs=82.4

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEeC---CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKLG---TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT   77 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~~---~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~   77 (162)
                      |+|+|++........+.++.+........+   .++.++||||.          +.+......++   +.+|++++++|+
T Consensus        16 li~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~----------~~~~~~~~~~~---~~~d~~i~v~d~   82 (161)
T cd01863          16 LLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQ----------ERFRTLTSSYY---RGAQGVILVYDV   82 (161)
T ss_pred             HHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCc----------hhhhhhhHHHh---CCCCEEEEEEEC
Confidence            467787763323345555555444433332   34889999998          12222333333   456999999998


Q ss_pred             CCCCCccH-HHHHHHHHH----hCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHH
Q 031293           78 KWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTV  152 (162)
Q Consensus        78 ~~~~~~~~-~~~~~~l~~----~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~  152 (162)
                      ..+.+-.. ..++..+..    .+.|+++|+||+|+.......+   ...+.....+   .+++++||++|.|++++++.
T Consensus        83 ~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~~---~~~~~~~~~~---~~~~~~Sa~~~~gi~~~~~~  156 (161)
T cd01863          83 TRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREVTRE---EGLKFARKHN---MLFIETSAKTRDGVQQAFEE  156 (161)
T ss_pred             CCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccccCHH---HHHHHHHHcC---CEEEEEecCCCCCHHHHHHH
Confidence            75432111 112333322    3588999999999973322111   2222333232   58999999999999999998


Q ss_pred             HHHh
Q 031293          153 LSKI  156 (162)
Q Consensus       153 i~~~  156 (162)
                      +.+.
T Consensus       157 ~~~~  160 (161)
T cd01863         157 LVEK  160 (161)
T ss_pred             HHHh
Confidence            8754

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>cd04122 Rab14 Rab14 subfamily

Probab=99.56  E-value=1.5e-13  Score=91.30  Aligned_cols=108  Identities=15%  Similarity=0.140  Sum_probs=69.0

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHHHHHH---hCCceEEEEeccC
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTD  107 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~~l~~---~~~~~ivv~nK~D  107 (162)
                      ++.++||||.          +.+......++   ++++++++|.|...+.+-.. ..++..+..   .+.|+++|.||+|
T Consensus        52 ~l~i~Dt~G~----------~~~~~~~~~~~---~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~D  118 (166)
T cd04122          52 KLQIWDTAGQ----------ERFRAVTRSYY---RGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKAD  118 (166)
T ss_pred             EEEEEECCCc----------HHHHHHHHHHh---cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcc
Confidence            4789999998          23344444454   35699999999876422111 122222222   2578999999999


Q ss_pred             CCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293          108 TVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  157 (162)
Q Consensus       108 l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~  157 (162)
                      +.......  .+..++.....+   .+++++||++|.|+++++..+...+
T Consensus       119 l~~~~~~~--~~~~~~~~~~~~---~~~~e~Sa~~~~~i~e~f~~l~~~~  163 (166)
T cd04122         119 LEAQRDVT--YEEAKQFADENG---LLFLECSAKTGENVEDAFLETAKKI  163 (166)
T ss_pred             cccccCcC--HHHHHHHHHHcC---CEEEEEECCCCCCHHHHHHHHHHHH
Confidence            97543221  112223333332   4899999999999999998887654

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>cd01862 Rab7 Rab7 subfamily

Probab=99.56  E-value=1.7e-13  Score=91.21  Aligned_cols=110  Identities=14%  Similarity=0.108  Sum_probs=68.5

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHH-HHHHH-HHH------hCCceEEEE
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDH-ELISL-MER------SQTKYQVVL  103 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~-~~~~~-l~~------~~~~~ivv~  103 (162)
                      .+.++|+||+          +.+..+...++   +.+|++++++|+..+.+-... .+... +..      .++|+++|+
T Consensus        50 ~~~~~D~~g~----------~~~~~~~~~~~---~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~  116 (172)
T cd01862          50 TLQIWDTAGQ----------ERFQSLGVAFY---RGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLG  116 (172)
T ss_pred             EEEEEeCCCh----------HHHHhHHHHHh---cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEE
Confidence            3679999998          22233333343   456999999998764321111 12221 221      268999999


Q ss_pred             eccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293          104 TKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR  158 (162)
Q Consensus       104 nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~  158 (162)
                      ||+|+..+....  .+..+..+...+  ..+++++||.+|.|++++++++.+.+.
T Consensus       117 nK~Dl~~~~~~~--~~~~~~~~~~~~--~~~~~~~Sa~~~~gv~~l~~~i~~~~~  167 (172)
T cd01862         117 NKIDLEEKRQVS--TKKAQQWCQSNG--NIPYFETSAKEAINVEQAFETIARKAL  167 (172)
T ss_pred             ECcccccccccC--HHHHHHHHHHcC--CceEEEEECCCCCCHHHHHHHHHHHHH
Confidence            999997422110  122233333332  258999999999999999999987553

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>COG2262 HflX GTPases [General function prediction only]

Probab=99.56  E-value=1e-13  Score=101.25  Aligned_cols=141  Identities=20%  Similarity=0.210  Sum_probs=94.0

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEE--e--CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEee
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFK--L--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLID   76 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~--~--~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid   76 (162)
                      |+|+|++.  ...+.+....|.+.....  +  +.++.+.||-|+-.. .+....+.|    +..+.+...+|+++.|+|
T Consensus       208 L~N~LT~~--~~~~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~-LP~~LV~AF----ksTLEE~~~aDlllhVVD  280 (411)
T COG2262         208 LFNALTGA--DVYVADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRD-LPHPLVEAF----KSTLEEVKEADLLLHVVD  280 (411)
T ss_pred             HHHHHhcc--CeeccccccccccCceeEEEeCCCceEEEecCccCccc-CChHHHHHH----HHHHHHhhcCCEEEEEee
Confidence            68999988  456677777776555432  2  567999999998332 233333344    344445566799999999


Q ss_pred             cCCCCCccHHH-HHHHHHH---hCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHH
Q 031293           77 TKWGVKPRDHE-LISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTV  152 (162)
Q Consensus        77 ~~~~~~~~~~~-~~~~l~~---~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~  152 (162)
                      ++++......+ ....|.+   ..+|+|.|+||+|++....   ...    .+....   ...+++||++|.|++.|++.
T Consensus       281 aSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~---~~~----~~~~~~---~~~v~iSA~~~~gl~~L~~~  350 (411)
T COG2262         281 ASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEE---ILA----ELERGS---PNPVFISAKTGEGLDLLRER  350 (411)
T ss_pred             cCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchh---hhh----hhhhcC---CCeEEEEeccCcCHHHHHHH
Confidence            99873222222 2233333   4689999999999885543   111    122121   26899999999999999999


Q ss_pred             HHHhhh
Q 031293          153 LSKIAR  158 (162)
Q Consensus       153 i~~~~~  158 (162)
                      |.+.+.
T Consensus       351 i~~~l~  356 (411)
T COG2262         351 IIELLS  356 (411)
T ss_pred             HHHHhh
Confidence            998765

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=99.56  E-value=3.1e-14  Score=94.75  Aligned_cols=138  Identities=17%  Similarity=0.203  Sum_probs=80.7

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEe-CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCC
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKL-GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW   79 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~-~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~   79 (162)
                      |+|+|++. ......++.|.+..  .+.. +.++.++|+||.          +.+......|+   ++++++++|+|+..
T Consensus        15 l~~~l~~~-~~~~~~~t~g~~~~--~~~~~~~~~~i~D~~G~----------~~~~~~~~~~~---~~a~~ii~V~D~s~   78 (167)
T cd04161          15 LVSALQGE-IPKKVAPTVGFTPT--KLRLDKYEVCIFDLGGG----------ANFRGIWVNYY---AEAHGLVFVVDSSD   78 (167)
T ss_pred             HHHHHhCC-CCccccCcccceEE--EEEECCEEEEEEECCCc----------HHHHHHHHHHH---cCCCEEEEEEECCc
Confidence            46777765 33334455554422  2222 446899999998          22233344454   45699999999876


Q ss_pred             CCCccH-HHHHHHHH-H---hCCceEEEEeccCCCCcHHHHHHHHHH--HHHHHhcCCCCCCeEEeecCCC------CCH
Q 031293           80 GVKPRD-HELISLME-R---SQTKYQVVLTKTDTVFPIDVARRAMQI--EESLKANNSLVQPVMMVSSKSG------AGI  146 (162)
Q Consensus        80 ~~~~~~-~~~~~~l~-~---~~~~~ivv~nK~Dl~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~Sa~~~------~g~  146 (162)
                      ..+-.. ..++..+. .   .++|+++|+||+|+.+........+.+  ....... ...++++++||++|      .|+
T Consensus        79 ~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~-~~~~~~~~~Sa~~g~~~~~~~g~  157 (167)
T cd04161          79 DDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNEN-KSLCHIEPCSAIEGLGKKIDPSI  157 (167)
T ss_pred             hhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCC-CceEEEEEeEceeCCCCccccCH
Confidence            431111 12233222 1   368999999999987543222222221  1111111 12357888999998      899


Q ss_pred             HHHHHHHHH
Q 031293          147 RSLRTVLSK  155 (162)
Q Consensus       147 ~~l~~~i~~  155 (162)
                      .+.++||.+
T Consensus       158 ~~~~~wl~~  166 (167)
T cd04161         158 VEGLRWLLA  166 (167)
T ss_pred             HHHHHHHhc
Confidence            999999964

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>PLN03118 Rab family protein; Provisional

Probab=99.56  E-value=1.7e-13  Score=94.55  Aligned_cols=138  Identities=17%  Similarity=0.144  Sum_probs=83.0

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEeC---CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKLG---TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT   77 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~~---~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~   77 (162)
                      |+|+|++. .....++..|.+.....+.++   ..+.++||||.          +.+......+++   .+|++++|+|+
T Consensus        30 li~~l~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~----------~~~~~~~~~~~~---~~d~~vlv~D~   95 (211)
T PLN03118         30 LLVSFISS-SVEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQ----------ERFRTLTSSYYR---NAQGIILVYDV   95 (211)
T ss_pred             HHHHHHhC-CCCCcCCCceeEEEEEEEEECCEEEEEEEEECCCc----------hhhHHHHHHHHh---cCCEEEEEEEC
Confidence            46777766 334444444444333333333   25789999998          223344444543   45999999998


Q ss_pred             CCCCCccHH--HHHHHHHH----hCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHH
Q 031293           78 KWGVKPRDH--ELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRT  151 (162)
Q Consensus        78 ~~~~~~~~~--~~~~~l~~----~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~  151 (162)
                      ....+-...  .+...+..    .+.|+++|.||+|+........  +.........+   .+++++||+++.|++++++
T Consensus        96 ~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~--~~~~~~~~~~~---~~~~e~SAk~~~~v~~l~~  170 (211)
T PLN03118         96 TRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSR--EEGMALAKEHG---CLFLECSAKTRENVEQCFE  170 (211)
T ss_pred             CCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCH--HHHHHHHHHcC---CEEEEEeCCCCCCHHHHHH
Confidence            764222221  12222322    2468999999999974332211  12222233232   4789999999999999999


Q ss_pred             HHHHhh
Q 031293          152 VLSKIA  157 (162)
Q Consensus       152 ~i~~~~  157 (162)
                      +|...+
T Consensus       171 ~l~~~~  176 (211)
T PLN03118        171 ELALKI  176 (211)
T ss_pred             HHHHHH
Confidence            998654

>cd01865 Rab3 Rab3 subfamily

Probab=99.56  E-value=1.8e-13  Score=90.80  Aligned_cols=108  Identities=14%  Similarity=0.099  Sum_probs=68.2

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHHHHHHh---CCceEEEEeccC
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS---QTKYQVVLTKTD  107 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~~l~~~---~~~~ivv~nK~D  107 (162)
                      .+.++||||+          +.+......+   .+++++++++.|.....+-.. .+++..+...   ..|+++|+||+|
T Consensus        51 ~~~l~Dt~g~----------~~~~~~~~~~---~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D  117 (165)
T cd01865          51 KLQIWDTAGQ----------ERYRTITTAY---YRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCD  117 (165)
T ss_pred             EEEEEECCCh----------HHHHHHHHHH---ccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcc
Confidence            4889999998          2223333333   355699999999875321111 2233344332   578999999999


Q ss_pred             CCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293          108 TVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  157 (162)
Q Consensus       108 l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~  157 (162)
                      +.......  .+...+.....+   .+++++||++|.|+++++++|.+.+
T Consensus       118 l~~~~~~~--~~~~~~~~~~~~---~~~~~~Sa~~~~gv~~l~~~l~~~~  162 (165)
T cd01865         118 MEDERVVS--SERGRQLADQLG---FEFFEASAKENINVKQVFERLVDII  162 (165)
T ss_pred             cCcccccC--HHHHHHHHHHcC---CEEEEEECCCCCCHHHHHHHHHHHH
Confidence            97533211  112222222222   3799999999999999999998754

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>cd04112 Rab26 Rab26 subfamily

Probab=99.56  E-value=2.1e-13  Score=92.69  Aligned_cols=109  Identities=19%  Similarity=0.192  Sum_probs=69.6

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHHHHHH---hCCceEEEEeccC
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTD  107 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~~l~~---~~~~~ivv~nK~D  107 (162)
                      .+.+|||||.          +.+......++   +.+|++++|+|+....+-.. ..++..+..   .++|+++|+||+|
T Consensus        51 ~~~i~Dt~G~----------~~~~~~~~~~~---~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~D  117 (191)
T cd04112          51 KLQIWDTAGQ----------ERFRSVTHAYY---RDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKAD  117 (191)
T ss_pred             EEEEEeCCCc----------HHHHHhhHHHc---cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEccc
Confidence            5889999998          22233333443   44699999999876422111 223333333   2589999999999


Q ss_pred             CCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293          108 TVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR  158 (162)
Q Consensus       108 l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~  158 (162)
                      +..+.....  +.........+   .+++++||++|.|+++++.+|.+.+.
T Consensus       118 l~~~~~~~~--~~~~~l~~~~~---~~~~e~Sa~~~~~v~~l~~~l~~~~~  163 (191)
T cd04112         118 MSGERVVKR--EDGERLAKEYG---VPFMETSAKTGLNVELAFTAVAKELK  163 (191)
T ss_pred             chhccccCH--HHHHHHHHHcC---CeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            864322111  12222233232   48999999999999999999987654

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.55  E-value=5.5e-14  Score=91.02  Aligned_cols=104  Identities=17%  Similarity=0.142  Sum_probs=66.4

Q ss_pred             EEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcHH
Q 031293           34 CLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPID  113 (162)
Q Consensus        34 ~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~  113 (162)
                      .++||||...      ..   ......+....+++|++++|+|+..+.+.....+...   ...|+++|+||+|+.+...
T Consensus        38 ~~iDt~G~~~------~~---~~~~~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~---~~~p~ilv~NK~Dl~~~~~  105 (142)
T TIGR02528        38 GAIDTPGEYV------EN---RRLYSALIVTAADADVIALVQSATDPESRFPPGFASI---FVKPVIGLVTKIDLAEADV  105 (142)
T ss_pred             eeecCchhhh------hh---HHHHHHHHHHhhcCCEEEEEecCCCCCcCCChhHHHh---ccCCeEEEEEeeccCCccc
Confidence            6899999711      01   1122222233567799999999987665544444332   2459999999999874322


Q ss_pred             HHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHH
Q 031293          114 VARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLS  154 (162)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~  154 (162)
                      ..   +..++.+...+  ..+++++||++|.|++++++++.
T Consensus       106 ~~---~~~~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l~  141 (142)
T TIGR02528       106 DI---ERAKELLETAG--AEPIFEISSVDEQGLEALVDYLN  141 (142)
T ss_pred             CH---HHHHHHHHHcC--CCcEEEEecCCCCCHHHHHHHHh
Confidence            11   22223333332  24799999999999999998874

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=99.55  E-value=7.3e-14  Score=97.66  Aligned_cols=142  Identities=15%  Similarity=0.151  Sum_probs=90.8

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEE--Ee-CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFF--KL-GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT   77 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~--~~-~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~   77 (162)
                      |+|+|++.  ...++..|++|.+....  .. +.++.++||||+.......      ..+....+...+++|++++|+|+
T Consensus        16 Ll~~Ltg~--~~~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~------~~~~~~~l~~~~~ad~il~V~D~   87 (233)
T cd01896          16 LLSKLTNT--KSEVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADG------KGRGRQVIAVARTADLILMVLDA   87 (233)
T ss_pred             HHHHHHCC--CccccCCCCccccceEEEEEECCeEEEEEECCCcccccccc------hhHHHHHHHhhccCCEEEEEecC
Confidence            58999988  35678889988755432  23 5568999999983321100      11223334455677999999997


Q ss_pred             CCCCCc------------------------------------------cHHH-HHHHHHHh-------------------
Q 031293           78 KWGVKP------------------------------------------RDHE-LISLMERS-------------------   95 (162)
Q Consensus        78 ~~~~~~------------------------------------------~~~~-~~~~l~~~-------------------   95 (162)
                      ..+...                                          .+.+ ....|++.                   
T Consensus        88 t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~~~~~~~~~  167 (233)
T cd01896          88 TKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIREDITVDDLI  167 (233)
T ss_pred             CcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEccCCCHHHHH
Confidence            542210                                          0111 11122211                   


Q ss_pred             --------CCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhhhhcC
Q 031293           96 --------QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARFAKV  162 (162)
Q Consensus        96 --------~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~~~k~  162 (162)
                              .+|+++|+||+|+.+..+..       ....     ..+++++||.+|.|++++++.|.+.+...+|
T Consensus       168 ~~~~~~~~y~p~iiV~NK~Dl~~~~~~~-------~~~~-----~~~~~~~SA~~g~gi~~l~~~i~~~L~~irv  230 (233)
T cd01896         168 DVIEGNRVYIPCLYVYNKIDLISIEELD-------LLAR-----QPNSVVISAEKGLNLDELKERIWDKLGLIRV  230 (233)
T ss_pred             HHHhCCceEeeEEEEEECccCCCHHHHH-------HHhc-----CCCEEEEcCCCCCCHHHHHHHHHHHhCcEEE
Confidence                    25899999999998654432       1111     1378999999999999999999998876654

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]

Probab=99.55  E-value=1.6e-13  Score=96.37  Aligned_cols=131  Identities=21%  Similarity=0.279  Sum_probs=98.8

Q ss_pred             eccCCCCcceEEEE--EEe-CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHH
Q 031293           13 RTSDKPGLTQTINF--FKL-GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELI   89 (162)
Q Consensus        13 ~~~~~~g~t~~~~~--~~~-~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~   89 (162)
                      ......|+|.....  |.. ++.+..||+|||             .+++++++.+..+.|..++|+.|.++..+++.+++
T Consensus        54 PeEk~rGITIntahveyet~~rhyahVDcPGH-------------aDYvKNMItgAaqmDgAILVVsA~dGpmPqTrEHi  120 (394)
T COG0050          54 PEEKARGITINTAHVEYETANRHYAHVDCPGH-------------ADYVKNMITGAAQMDGAILVVAATDGPMPQTREHI  120 (394)
T ss_pred             chHhhcCceeccceeEEecCCceEEeccCCCh-------------HHHHHHHhhhHHhcCccEEEEEcCCCCCCcchhhh
Confidence            34556777764432  333 667999999999             99999999999999999999999999999999998


Q ss_pred             HHHHHhCCc-eEEEEeccCCCCcHH-HHHHHHHHHHHHHhcCCC--CCCeEEeecCCC-CC-------HHHHHHHHHHh
Q 031293           90 SLMERSQTK-YQVVLTKTDTVFPID-VARRAMQIEESLKANNSL--VQPVMMVSSKSG-AG-------IRSLRTVLSKI  156 (162)
Q Consensus        90 ~~l~~~~~~-~ivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~--~~~i~~~Sa~~~-~g-------~~~l~~~i~~~  156 (162)
                      ...+..+.| +++++||+|+++..+ .+......++++..++..  ..|++.-||+.. +|       +.+|++++.+.
T Consensus       121 LlarqvGvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y~f~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~y  199 (394)
T COG0050         121 LLARQVGVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEYGFPGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSY  199 (394)
T ss_pred             hhhhhcCCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHcCCCCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhc
Confidence            888888997 788999999997554 444456677777776532  457777776552 22       45555555543

>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=99.55  E-value=7.2e-14  Score=98.87  Aligned_cols=141  Identities=19%  Similarity=0.196  Sum_probs=91.3

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEe----CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEee
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKL----GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLID   76 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~----~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid   76 (162)
                      |+|+|+..  .++++.++.||.....-..    -.++++-|.||+-......      ..+-.++++..+.++.+++|+|
T Consensus       212 LL~als~A--KpkVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~n------kGlG~~FLrHiER~~~l~fVvD  283 (366)
T KOG1489|consen  212 LLNALSRA--KPKVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMN------KGLGYKFLRHIERCKGLLFVVD  283 (366)
T ss_pred             HHHHhhcc--CCcccccceeeeccccceeeccccceeEeccCcccccccccc------CcccHHHHHHHHhhceEEEEEE
Confidence            57899988  5699999999986665333    3349999999984432111      2223345555566799999999


Q ss_pred             cCCCCCc---cHHHHH-HHHHH-----hCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHH
Q 031293           77 TKWGVKP---RDHELI-SLMER-----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIR  147 (162)
Q Consensus        77 ~~~~~~~---~~~~~~-~~l~~-----~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~  147 (162)
                      .+.+...   .+.+.+ .++..     ...|.++|+||+|+.+  ..+..++.+.+.+.   .  ..++++||++++|++
T Consensus       284 ~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~e--ae~~~l~~L~~~lq---~--~~V~pvsA~~~egl~  356 (366)
T KOG1489|consen  284 LSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPE--AEKNLLSSLAKRLQ---N--PHVVPVSAKSGEGLE  356 (366)
T ss_pred             CCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchh--HHHHHHHHHHHHcC---C--CcEEEeeeccccchH
Confidence            8765211   112221 22222     2578999999999852  22222233333322   1  369999999999999


Q ss_pred             HHHHHHHHh
Q 031293          148 SLRTVLSKI  156 (162)
Q Consensus       148 ~l~~~i~~~  156 (162)
                      +|+..|.+.
T Consensus       357 ~ll~~lr~~  365 (366)
T KOG1489|consen  357 ELLNGLREL  365 (366)
T ss_pred             HHHHHHhhc
Confidence            999998764

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=99.55  E-value=9.7e-14  Score=90.60  Aligned_cols=139  Identities=21%  Similarity=0.188  Sum_probs=82.6

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEE--EEeC---CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEe
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINF--FKLG---TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLI   75 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~--~~~~---~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vi   75 (162)
                      |+|+|++. . ...+..++++.+...  +..+   ..+.++|+||+...      ...+....+.+......+|.++.+.
T Consensus        17 l~~~l~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~------~~~~~~~~~~~~~~i~~~d~~~~v~   88 (161)
T TIGR00231        17 LLNRLLGN-K-FITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDY------RAIRRLYYRAVESSLRVFDIVILVL   88 (161)
T ss_pred             HHHHHhCC-C-CcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccc------hHHHHHHHhhhhEEEEEEEEeeeeh
Confidence            57888888 3 556677777776655  3333   45889999997221      1112223444433334455555555


Q ss_pred             ecCCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHH
Q 031293           76 DTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLS  154 (162)
Q Consensus        76 d~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~  154 (162)
                      ++..........+..... .+.|+++++||+|+......    ......+...+.  .+++++||.+|.|+++++++|.
T Consensus        89 ~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~----~~~~~~~~~~~~--~~~~~~sa~~~~gv~~~~~~l~  160 (161)
T TIGR00231        89 DVEEILEKQTKEIIHHAE-SNVPIILVGNKIDLRDAKLK----THVAFLFAKLNG--EPIIPLSAETGKNIDSAFKIVE  160 (161)
T ss_pred             hhhhHhHHHHHHHHHhcc-cCCcEEEEEEcccCCcchhh----HHHHHHHhhccC--CceEEeecCCCCCHHHHHHHhh
Confidence            554432222222222222 27899999999999754311    222333333322  4799999999999999999875

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=99.55  E-value=1.5e-13  Score=91.42  Aligned_cols=108  Identities=16%  Similarity=0.110  Sum_probs=69.0

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHHHHHH---hCCceEEEEeccC
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTD  107 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~~l~~---~~~~~ivv~nK~D  107 (162)
                      ++.++||||.          +.+......++   +.+|+++++.|+..+.+-.. ..++..+..   .+.|+++|.||+|
T Consensus        53 ~l~l~D~~g~----------~~~~~~~~~~~---~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D  119 (167)
T cd01867          53 KLQIWDTAGQ----------ERFRTITTAYY---RGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCD  119 (167)
T ss_pred             EEEEEeCCch----------HHHHHHHHHHh---CCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcc
Confidence            5789999997          22233344443   45699999999876432111 123333332   3579999999999


Q ss_pred             CCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293          108 TVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  157 (162)
Q Consensus       108 l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~  157 (162)
                      +.+.....  .+...+.....+   .+++++||++|.|+++++.++.+.+
T Consensus       120 l~~~~~~~--~~~~~~~~~~~~---~~~~~~Sa~~~~~v~~~~~~i~~~~  164 (167)
T cd01867         120 MEEKRVVS--KEEGEALADEYG---IKFLETSAKANINVEEAFFTLAKDI  164 (167)
T ss_pred             cccccCCC--HHHHHHHHHHcC---CEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            97432211  112223333222   4899999999999999999998765

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>cd04155 Arl3 Arl3 subfamily

Probab=99.55  E-value=3.9e-14  Score=94.58  Aligned_cols=136  Identities=19%  Similarity=0.210  Sum_probs=78.8

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEeCCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCC
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG   80 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~   80 (162)
                      |+|+|.+. ......+..|.+...... .+..+.++|+||..          .+...+..++   ..++++++++|+.+.
T Consensus        30 Ll~~l~~~-~~~~~~~t~g~~~~~i~~-~~~~~~~~D~~G~~----------~~~~~~~~~~---~~~~~ii~v~D~~~~   94 (173)
T cd04155          30 ILKQLASE-DISHITPTQGFNIKTVQS-DGFKLNVWDIGGQR----------AIRPYWRNYF---ENTDCLIYVIDSADK   94 (173)
T ss_pred             HHHHHhcC-CCcccCCCCCcceEEEEE-CCEEEEEEECCCCH----------HHHHHHHHHh---cCCCEEEEEEeCCCH
Confidence            46677766 333344444433222111 15568899999981          1223333443   456899999998753


Q ss_pred             CC--ccHHHHHHHH---HHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHh--cCCCCCCeEEeecCCCCCHHHHHHHH
Q 031293           81 VK--PRDHELISLM---ERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKA--NNSLVQPVMMVSSKSGAGIRSLRTVL  153 (162)
Q Consensus        81 ~~--~~~~~~~~~l---~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~Sa~~~~g~~~l~~~i  153 (162)
                      ..  ....++...+   ...++|+++++||+|+.+.....+..    +.++.  ...+.++++++||++|.|++++++||
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~i~----~~l~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l  170 (173)
T cd04155          95 KRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPAEEIA----EALNLHDLRDRTWHIQACSAKTGEGLQEGMNWV  170 (173)
T ss_pred             HHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCCHHHHH----HHcCCcccCCCeEEEEEeECCCCCCHHHHHHHH
Confidence            21  1111221222   22468999999999987543332222    22221  11223467899999999999999998


Q ss_pred             HH
Q 031293          154 SK  155 (162)
Q Consensus       154 ~~  155 (162)
                      .+
T Consensus       171 ~~  172 (173)
T cd04155         171 CK  172 (173)
T ss_pred             hc
Confidence            64

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>cd04121 Rab40 Rab40 subfamily

Probab=99.55  E-value=2.5e-13  Score=92.07  Aligned_cols=108  Identities=19%  Similarity=0.181  Sum_probs=72.4

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHHHHHH--hCCceEEEEeccCC
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER--SQTKYQVVLTKTDT  108 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~~l~~--~~~~~ivv~nK~Dl  108 (162)
                      ++.++||||.          +.+..+...+++   .+|++++|.|...+.+-.. ..++..+..  .+.|+++|.||+|+
T Consensus        56 ~l~iwDt~G~----------~~~~~l~~~~~~---~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL  122 (189)
T cd04121          56 KLQLWDTSGQ----------GRFCTIFRSYSR---GAQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHL  122 (189)
T ss_pred             EEEEEeCCCc----------HHHHHHHHHHhc---CCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccc
Confidence            5789999999          333445555543   5599999999876432222 224444443  36899999999998


Q ss_pred             CCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293          109 VFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  157 (162)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~  157 (162)
                      .....+.  .+..++.....+   .+++++||++|.|++++++++.+.+
T Consensus       123 ~~~~~v~--~~~~~~~a~~~~---~~~~e~SAk~g~~V~~~F~~l~~~i  166 (189)
T cd04121         123 AFKRQVA--TEQAQAYAERNG---MTFFEVSPLCNFNITESFTELARIV  166 (189)
T ss_pred             hhccCCC--HHHHHHHHHHcC---CEEEEecCCCCCCHHHHHHHHHHHH
Confidence            6432221  122333344333   4899999999999999999998654

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>cd00879 Sar1 Sar1 subfamily

Probab=99.55  E-value=3.7e-14  Score=96.17  Aligned_cols=136  Identities=18%  Similarity=0.185  Sum_probs=78.1

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEe-CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCC
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKL-GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW   79 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~-~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~   79 (162)
                      |+|+|.+.. .....+..+.+.  ..... +..+.++|+||+.          .+......++   ..++++++|+|+.+
T Consensus        35 Li~~l~~~~-~~~~~~T~~~~~--~~i~~~~~~~~l~D~~G~~----------~~~~~~~~~~---~~ad~iilV~D~~~   98 (190)
T cd00879          35 LLHMLKDDR-LAQHVPTLHPTS--EELTIGNIKFKTFDLGGHE----------QARRLWKDYF---PEVDGIVFLVDAAD   98 (190)
T ss_pred             HHHHHhcCC-CcccCCccCcce--EEEEECCEEEEEEECCCCH----------HHHHHHHHHh---ccCCEEEEEEECCc
Confidence            466776652 222222222221  12222 4468899999981          1122333443   34599999999875


Q ss_pred             CC--CccHHHHHHHHH---HhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhc-------------CCCCCCeEEeecC
Q 031293           80 GV--KPRDHELISLME---RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKAN-------------NSLVQPVMMVSSK  141 (162)
Q Consensus        80 ~~--~~~~~~~~~~l~---~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-------------~~~~~~i~~~Sa~  141 (162)
                      .-  .....++...+.   ..+.|+++++||+|+......+    .+++.++..             .....+++++||+
T Consensus        99 ~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  174 (190)
T cd00879          99 PERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAVSEE----ELRQALGLYGTTTGKGVSLKVSGIRPIEVFMCSVV  174 (190)
T ss_pred             HHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCHH----HHHHHhCcccccccccccccccCceeEEEEEeEec
Confidence            31  111122222232   2358999999999986432222    233333211             1123578999999


Q ss_pred             CCCCHHHHHHHHHHh
Q 031293          142 SGAGIRSLRTVLSKI  156 (162)
Q Consensus       142 ~~~g~~~l~~~i~~~  156 (162)
                      +|+|+++++++|.+.
T Consensus       175 ~~~gv~e~~~~l~~~  189 (190)
T cd00879         175 KRQGYGEAFRWLSQY  189 (190)
T ss_pred             CCCChHHHHHHHHhh
Confidence            999999999999764

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=99.55  E-value=1.5e-13  Score=87.99  Aligned_cols=116  Identities=22%  Similarity=0.238  Sum_probs=79.9

Q ss_pred             CCCcceEEEEEEeCCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhC
Q 031293           17 KPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQ   96 (162)
Q Consensus        17 ~~g~t~~~~~~~~~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~   96 (162)
                      ....|+.+.++.     .++||||-....         ..+....+.....+|.|+++.|+.++.......+...   ..
T Consensus        27 ~~~KTq~i~~~~-----~~IDTPGEyiE~---------~~~y~aLi~ta~dad~V~ll~dat~~~~~~pP~fa~~---f~   89 (143)
T PF10662_consen   27 RYKKTQAIEYYD-----NTIDTPGEYIEN---------PRFYHALIVTAQDADVVLLLQDATEPRSVFPPGFASM---FN   89 (143)
T ss_pred             CcCccceeEecc-----cEEECChhheeC---------HHHHHHHHHHHhhCCEEEEEecCCCCCccCCchhhcc---cC
Confidence            344566666442     469999952211         3445555555567899999999988665555455443   36


Q ss_pred             CceEEEEeccCCC-CcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHH
Q 031293           97 TKYQVVLTKTDTV-FPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSK  155 (162)
Q Consensus        97 ~~~ivv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~  155 (162)
                      .|+|-|+||+|+. +....+    ..++.+...+.  .+++.+|+.+|+|+++|.++|.+
T Consensus        90 ~pvIGVITK~Dl~~~~~~i~----~a~~~L~~aG~--~~if~vS~~~~eGi~eL~~~L~~  143 (143)
T PF10662_consen   90 KPVIGVITKIDLPSDDANIE----RAKKWLKNAGV--KEIFEVSAVTGEGIEELKDYLEE  143 (143)
T ss_pred             CCEEEEEECccCccchhhHH----HHHHHHHHcCC--CCeEEEECCCCcCHHHHHHHHhC
Confidence            8999999999998 333333    44445555554  47899999999999999999864

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=99.54  E-value=5.3e-13  Score=91.08  Aligned_cols=152  Identities=11%  Similarity=0.117  Sum_probs=98.6

Q ss_pred             ChhcccCCCCceecc-CCCCcceEEEEEE--e-CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEee
Q 031293            1 MLNALTRQWGVVRTS-DKPGLTQTINFFK--L-GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLID   76 (162)
Q Consensus         1 lin~L~~~~~~~~~~-~~~g~t~~~~~~~--~-~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid   76 (162)
                      |+|+|+|+. ...++ ..++.|+....+.  . +.++.++||||+++........  ...+.+.+.....+++++++|++
T Consensus        16 l~N~ilg~~-~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~--~~~i~~~~~~~~~g~~~illVi~   92 (196)
T cd01852          16 TGNTILGRE-VFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQL--SKEIVRCLSLSAPGPHAFLLVVP   92 (196)
T ss_pred             HHHHhhCCC-ccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHH--HHHHHHHHHhcCCCCEEEEEEEE
Confidence            589999984 44333 3567777655432  2 6679999999998764322111  12233333334567899999999


Q ss_pred             cCCCCCccHHHHHHHHHHh-C----CceEEEEeccCCCCcHHHHHHH----HHHHHHHHhcCCCCCCeEEee-----cCC
Q 031293           77 TKWGVKPRDHELISLMERS-Q----TKYQVVLTKTDTVFPIDVARRA----MQIEESLKANNSLVQPVMMVS-----SKS  142 (162)
Q Consensus        77 ~~~~~~~~~~~~~~~l~~~-~----~~~ivv~nK~Dl~~~~~~~~~~----~~~~~~~~~~~~~~~~i~~~S-----a~~  142 (162)
                      +.. ++..+...++.+.+. +    .++++++|+.|.+.....++.+    ..++..+...+.   .++.++     +..
T Consensus        93 ~~~-~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~---r~~~f~~~~~~~~~  168 (196)
T cd01852          93 LGR-FTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGG---RYVAFNNKAKGEEQ  168 (196)
T ss_pred             CCC-cCHHHHHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCC---eEEEEeCCCCcchh
Confidence            987 777777777777653 2    5789999999987544333221    344445554443   333443     566


Q ss_pred             CCCHHHHHHHHHHhhhh
Q 031293          143 GAGIRSLRTVLSKIARF  159 (162)
Q Consensus       143 ~~g~~~l~~~i~~~~~~  159 (162)
                      +.++++|++.|.+.++.
T Consensus       169 ~~q~~~Ll~~i~~~~~~  185 (196)
T cd01852         169 EQQVKELLAKVESMVKE  185 (196)
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            88899999999987764

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.54  E-value=3e-13  Score=92.46  Aligned_cols=106  Identities=14%  Similarity=0.068  Sum_probs=70.2

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHH-HHHHHHHH--hCCceEEEEeccCC
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDH-ELISLMER--SQTKYQVVLTKTDT  108 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~-~~~~~l~~--~~~~~ivv~nK~Dl  108 (162)
                      ++.+|||||.          +.+..+...|++   +++++++|+|.....+-... .+...+..  .++|+++|.||+|+
T Consensus        45 ~l~iwDt~G~----------e~~~~l~~~~~~---~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl  111 (200)
T smart00176       45 RFNVWDTAGQ----------EKFGGLRDGYYI---QGQCAIIMFDVTARVTYKNVPNWHRDLVRVCENIPIVLCGNKVDV  111 (200)
T ss_pred             EEEEEECCCc----------hhhhhhhHHHhc---CCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCEEEEEECccc
Confidence            5889999999          333444555544   45899999998765322222 23444443  36899999999998


Q ss_pred             CCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293          109 VFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  157 (162)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~  157 (162)
                      .......+   .. +.....   ..+++++||++|.|+++++.+|...+
T Consensus       112 ~~~~v~~~---~~-~~~~~~---~~~~~e~SAk~~~~v~~~F~~l~~~i  153 (200)
T smart00176      112 KDRKVKAK---SI-TFHRKK---NLQYYDISAKSNYNFEKPFLWLARKL  153 (200)
T ss_pred             ccccCCHH---HH-HHHHHc---CCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            53221111   11 122222   25899999999999999999998755

Ran is involved in the active transport of proteins through nuclear pores.

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=99.54  E-value=1.1e-13  Score=93.43  Aligned_cols=111  Identities=15%  Similarity=0.159  Sum_probs=68.8

Q ss_pred             CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCC--CccHHHHHHHHHH---hCCceEEEEe
Q 031293           30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV--KPRDHELISLMER---SQTKYQVVLT  104 (162)
Q Consensus        30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~--~~~~~~~~~~l~~---~~~~~ivv~n  104 (162)
                      +..+.++||||.          +.+......+++   .+|++++|+|+.+.-  .....++.+.+..   .+.|+++|+|
T Consensus        60 ~~~~~l~D~~G~----------~~~~~~~~~~~~---~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~N  126 (182)
T PTZ00133         60 NLKFTMWDVGGQ----------DKLRPLWRHYYQ---NTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFAN  126 (182)
T ss_pred             CEEEEEEECCCC----------HhHHHHHHHHhc---CCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEe
Confidence            345899999998          222334444543   459999999987532  2222223333332   2578999999


Q ss_pred             ccCCCCcHHHHHHHHHHHHHHHhc--CCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293          105 KTDTVFPIDVARRAMQIEESLKAN--NSLVQPVMMVSSKSGAGIRSLRTVLSKIA  157 (162)
Q Consensus       105 K~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~  157 (162)
                      |.|+.+.....+    +...++..  ..+.+.++++||++|.|+++++++|.+.+
T Consensus       127 K~Dl~~~~~~~~----i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~e~~~~l~~~i  177 (182)
T PTZ00133        127 KQDLPNAMSTTE----VTEKLGLHSVRQRNWYIQGCCATTAQGLYEGLDWLSANI  177 (182)
T ss_pred             CCCCCCCCCHHH----HHHHhCCCcccCCcEEEEeeeCCCCCCHHHHHHHHHHHH
Confidence            999864322221    22222221  11223567899999999999999998755

>PLN03110 Rab GTPase; Provisional

Probab=99.54  E-value=2.8e-13  Score=93.77  Aligned_cols=109  Identities=11%  Similarity=0.050  Sum_probs=70.5

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHHHHHH---hCCceEEEEeccC
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTD  107 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~~l~~---~~~~~ivv~nK~D  107 (162)
                      ++.+|||||.          +.+......+++   .++++++++|+....+-.. ..++..+..   .++|+++|.||+|
T Consensus        62 ~l~l~Dt~G~----------~~~~~~~~~~~~---~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D  128 (216)
T PLN03110         62 KAQIWDTAGQ----------ERYRAITSAYYR---GAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSD  128 (216)
T ss_pred             EEEEEECCCc----------HHHHHHHHHHhC---CCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChh
Confidence            5889999998          333444444543   4699999999876432222 123333433   3689999999999


Q ss_pred             CCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293          108 TVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR  158 (162)
Q Consensus       108 l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~  158 (162)
                      +........  +..+......   ..+++++||++|.|++++++++.+.+.
T Consensus       129 l~~~~~~~~--~~~~~l~~~~---~~~~~e~SA~~g~~v~~lf~~l~~~i~  174 (216)
T PLN03110        129 LNHLRSVAE--EDGQALAEKE---GLSFLETSALEATNVEKAFQTILLEIY  174 (216)
T ss_pred             cccccCCCH--HHHHHHHHHc---CCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            864332211  1122222222   258999999999999999999977553

>cd04110 Rab35 Rab35 subfamily

Probab=99.53  E-value=3.7e-13  Score=92.07  Aligned_cols=108  Identities=14%  Similarity=0.148  Sum_probs=69.6

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHHHHHHh--CCceEEEEeccCC
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS--QTKYQVVLTKTDT  108 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~~l~~~--~~~~ivv~nK~Dl  108 (162)
                      .+.++||||.          +.+......++   +.++++++|+|+.++.+-.. ..++..+...  ..|+++|+||+|+
T Consensus        56 ~l~l~D~~G~----------~~~~~~~~~~~---~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl  122 (199)
T cd04110          56 KLQIWDTAGQ----------ERFRTITSTYY---RGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDD  122 (199)
T ss_pred             EEEEEeCCCc----------hhHHHHHHHHh---CCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccc
Confidence            4789999998          22233444454   34589999999876432111 1233333332  4789999999999


Q ss_pred             CCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293          109 VFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  157 (162)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~  157 (162)
                      .......  .+.........+   .+++++||++|.|+++++.+|...+
T Consensus       123 ~~~~~~~--~~~~~~~~~~~~---~~~~e~Sa~~~~gi~~lf~~l~~~~  166 (199)
T cd04110         123 PERKVVE--TEDAYKFAGQMG---ISLFETSAKENINVEEMFNCITELV  166 (199)
T ss_pred             ccccccC--HHHHHHHHHHcC---CEEEEEECCCCcCHHHHHHHHHHHH
Confidence            7543221  112222333332   5899999999999999999998755

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]

Probab=99.53  E-value=1.3e-13  Score=104.16  Aligned_cols=123  Identities=16%  Similarity=0.204  Sum_probs=97.3

Q ss_pred             eccCCCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCC-------CC
Q 031293           13 RTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG-------VK   82 (162)
Q Consensus        13 ~~~~~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~-------~~   82 (162)
                      +.+...|+|.++....+   ...++++|+|||             ..|+.+++.+...+|..++|+|++.+       ..
T Consensus       234 ~eERerGvTm~v~~~~fes~~~~~tliDaPGh-------------kdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~  300 (603)
T KOG0458|consen  234 KEERERGVTMDVKTTWFESKSKIVTLIDAPGH-------------KDFIPNMISGASQADVAVLVVDASTGEFESGFDPG  300 (603)
T ss_pred             hhhhhcceeEEeeeEEEecCceeEEEecCCCc-------------cccchhhhccccccceEEEEEECCcchhhhccCCC
Confidence            45667888887776444   335999999999             88999999999999999999998642       35


Q ss_pred             ccHHHHHHHHHHhCCc-eEEEEeccCCC--CcHHHHHHHHHHHHHH-HhcCC--CCCCeEEeecCCCCCHHH
Q 031293           83 PRDHELISLMERSQTK-YQVVLTKTDTV--FPIDVARRAMQIEESL-KANNS--LVQPVMMVSSKSGAGIRS  148 (162)
Q Consensus        83 ~~~~~~~~~l~~~~~~-~ivv~nK~Dl~--~~~~~~~~~~~~~~~~-~~~~~--~~~~i~~~Sa~~~~g~~~  148 (162)
                      .+..+++..++.+++. ++|++||+|++  ++...+++...+..++ ...+.  ..+.++|+|+..|+|+-+
T Consensus       301 gQtrEha~llr~Lgi~qlivaiNKmD~V~Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k  372 (603)
T KOG0458|consen  301 GQTREHALLLRSLGISQLIVAINKMDLVSWSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIK  372 (603)
T ss_pred             CchHHHHHHHHHcCcceEEEEeecccccCccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCcccc
Confidence            6677888888888876 89999999999  4556677777777777 43333  335899999999999764

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=99.53  E-value=7.9e-14  Score=92.27  Aligned_cols=109  Identities=15%  Similarity=0.103  Sum_probs=67.9

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHHHHHH----hCCceEEEEecc
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKT  106 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~~l~~----~~~~~ivv~nK~  106 (162)
                      ++.++||||+.          .+..+...++.   .+++++++.|+..+.+-.. ..+...+..    .+.|+++|.||+
T Consensus        49 ~l~i~Dt~g~~----------~~~~~~~~~~~---~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~  115 (164)
T smart00173       49 LLDILDTAGQE----------EFSAMRDQYMR---TGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKC  115 (164)
T ss_pred             EEEEEECCCcc----------cchHHHHHHHh---hCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECc
Confidence            47799999982          22333444443   3489999999875322111 112222222    258999999999


Q ss_pred             CCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293          107 DTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR  158 (162)
Q Consensus       107 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~  158 (162)
                      |+.+......  +...+.....+   .+++++||++|.|+++++++|.+.+.
T Consensus       116 Dl~~~~~~~~--~~~~~~~~~~~---~~~~~~Sa~~~~~i~~l~~~l~~~~~  162 (164)
T smart00173      116 DLESERVVST--EEGKELARQWG---CPFLETSAKERVNVDEAFYDLVREIR  162 (164)
T ss_pred             cccccceEcH--HHHHHHHHHcC---CEEEEeecCCCCCHHHHHHHHHHHHh
Confidence            9875322111  12222233222   58999999999999999999987653

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>COG1084 Predicted GTPase [General function prediction only]

Probab=99.53  E-value=3.7e-13  Score=95.81  Aligned_cols=144  Identities=17%  Similarity=0.206  Sum_probs=91.6

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEE--EEeCC-ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINF--FKLGT-KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT   77 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~--~~~~~-~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~   77 (162)
                      |+++|++.  ...+.++|.||..++.  +..+. ++.++||||+=+-.  .+.+...+..--.+++..  .++|+|++|+
T Consensus       184 lv~~lT~A--kpEvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRP--l~ErN~IE~qAi~AL~hl--~~~IlF~~D~  257 (346)
T COG1084         184 LVRKLTTA--KPEVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRP--LEERNEIERQAILALRHL--AGVILFLFDP  257 (346)
T ss_pred             HHHHHhcC--CCccCCCCccccceeEeeeecCCceEEEecCCcccCCC--hHHhcHHHHHHHHHHHHh--cCeEEEEEcC
Confidence            46788888  5679999999997765  44333 69999999983321  222222222222233333  4899999999


Q ss_pred             CCC--CCccH-HHHHHHHHH-hCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHH
Q 031293           78 KWG--VKPRD-HELISLMER-SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVL  153 (162)
Q Consensus        78 ~~~--~~~~~-~~~~~~l~~-~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i  153 (162)
                      ++.  .+... ..++..++. .+.|+++|+||+|..+....++....+    ...+.  .....+++..+.+.+.+...+
T Consensus       258 Se~cgy~lE~Q~~L~~eIk~~f~~p~v~V~nK~D~~~~e~~~~~~~~~----~~~~~--~~~~~~~~~~~~~~d~~~~~v  331 (346)
T COG1084         258 SETCGYSLEEQISLLEEIKELFKAPIVVVINKIDIADEEKLEEIEASV----LEEGG--EEPLKISATKGCGLDKLREEV  331 (346)
T ss_pred             ccccCCCHHHHHHHHHHHHHhcCCCeEEEEecccccchhHHHHHHHHH----Hhhcc--ccccceeeeehhhHHHHHHHH
Confidence            763  33222 234455544 357899999999998776665544332    22221  245678888999999888777


Q ss_pred             HHh
Q 031293          154 SKI  156 (162)
Q Consensus       154 ~~~  156 (162)
                      ...
T Consensus       332 ~~~  334 (346)
T COG1084         332 RKT  334 (346)
T ss_pred             HHH
Confidence            654

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=99.52  E-value=6.1e-14  Score=87.88  Aligned_cols=99  Identities=19%  Similarity=0.340  Sum_probs=72.0

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEE--Ee-CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFF--KL-GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT   77 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~--~~-~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~   77 (162)
                      |+|+|++. ..+.++..+++|+.....  .. +..+.++||||+........    +......+++....+|++++|+|+
T Consensus        15 lin~l~~~-~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~----~~~~~~~~~~~~~~~d~ii~vv~~   89 (116)
T PF01926_consen   15 LINALTGK-KLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDN----DGKEIRKFLEQISKSDLIIYVVDA   89 (116)
T ss_dssp             HHHHHHTS-TSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHH----HHHHHHHHHHHHCTESEEEEEEET
T ss_pred             HHHHHhcc-ccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhH----HHHHHHHHHHHHHHCCEEEEEEEC
Confidence            68999997 578899999999988442  33 44579999999965422111    112344555555677999999998


Q ss_pred             CCCCCccHHHHHHHHHHhCCceEEEEec
Q 031293           78 KWGVKPRDHELISLMERSQTKYQVVLTK  105 (162)
Q Consensus        78 ~~~~~~~~~~~~~~l~~~~~~~ivv~nK  105 (162)
                      ..+....+.+++++++ .+.|+++|+||
T Consensus        90 ~~~~~~~~~~~~~~l~-~~~~~i~v~NK  116 (116)
T PF01926_consen   90 SNPITEDDKNILRELK-NKKPIILVLNK  116 (116)
T ss_dssp             TSHSHHHHHHHHHHHH-TTSEEEEEEES
T ss_pred             CCCCCHHHHHHHHHHh-cCCCEEEEEcC
Confidence            8754555667778886 78999999998

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>cd04136 Rap_like Rap-like subfamily

Probab=99.52  E-value=2e-13  Score=90.14  Aligned_cols=108  Identities=17%  Similarity=0.125  Sum_probs=67.4

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHHHHHH----hCCceEEEEecc
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKT  106 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~~l~~----~~~~~ivv~nK~  106 (162)
                      .+.++||||..          .+..+...+++   .+++++++.|.....+-.. ..+...+..    .++|+++|+||+
T Consensus        50 ~l~i~Dt~G~~----------~~~~~~~~~~~---~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~  116 (163)
T cd04136          50 MLEILDTAGTE----------QFTAMRDLYIK---NGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKC  116 (163)
T ss_pred             EEEEEECCCcc----------ccchHHHHHhh---cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECc
Confidence            46789999982          22333444443   4589999999865422111 122333332    258999999999


Q ss_pred             CCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293          107 DTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  157 (162)
Q Consensus       107 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~  157 (162)
                      |+........  +.........+   .+++++||++|.|+++++.++.+.+
T Consensus       117 Dl~~~~~~~~--~~~~~~~~~~~---~~~~~~Sa~~~~~v~~l~~~l~~~~  162 (163)
T cd04136         117 DLEDERVVSR--EEGQALARQWG---CPFYETSAKSKINVDEVFADLVRQI  162 (163)
T ss_pred             cccccceecH--HHHHHHHHHcC---CeEEEecCCCCCCHHHHHHHHHHhc
Confidence            9864332211  11222222222   5899999999999999999998653

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd04142 RRP22 RRP22 subfamily

Probab=99.52  E-value=7.1e-13  Score=90.57  Aligned_cols=117  Identities=15%  Similarity=0.019  Sum_probs=68.8

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHHHHH------HhCCceEEEEe
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLME------RSQTKYQVVLT  104 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~~l~------~~~~~~ivv~n  104 (162)
                      ++.++||||....... ...+ +...   .......+|++++|+|+..+.+-.. ..+.+.+.      ..++|+++|.|
T Consensus        50 ~l~i~Dt~G~~~~~~~-~~~e-~~~~---~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgN  124 (198)
T cd04142          50 DLHILDVPNMQRYPGT-AGQE-WMDP---RFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGN  124 (198)
T ss_pred             EEEEEeCCCcccCCcc-chhH-HHHH---HHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEE
Confidence            4779999997432111 1111 1111   1222356799999999976432221 12223222      13589999999


Q ss_pred             ccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293          105 KTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  157 (162)
Q Consensus       105 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~  157 (162)
                      |+|+........  +..+......  ...+++++||++|.|++++++.+...+
T Consensus       125 K~Dl~~~~~~~~--~~~~~~~~~~--~~~~~~e~Sak~g~~v~~lf~~i~~~~  173 (198)
T cd04142         125 KRDQQRHRFAPR--HVLSVLVRKS--WKCGYLECSAKYNWHILLLFKELLISA  173 (198)
T ss_pred             CccccccccccH--HHHHHHHHHh--cCCcEEEecCCCCCCHHHHHHHHHHHh
Confidence            999964322211  1222222211  125899999999999999999987643

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>PRK12739 elongation factor G; Reviewed

Probab=99.52  E-value=2.1e-13  Score=108.58  Aligned_cols=83  Identities=19%  Similarity=0.274  Sum_probs=68.2

Q ss_pred             CCCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHH
Q 031293           16 DKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLM   92 (162)
Q Consensus        16 ~~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l   92 (162)
                      ..+|+|.+.....+   +.++.++||||+             .++..+...+.+.+|++++|+|+.+++..++..++..+
T Consensus        55 ~~rgiti~~~~~~~~~~~~~i~liDTPG~-------------~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~  121 (691)
T PRK12739         55 QERGITITSAATTCFWKGHRINIIDTPGH-------------VDFTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQA  121 (691)
T ss_pred             hhcCCCccceeEEEEECCEEEEEEcCCCH-------------HHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHH
Confidence            36788876654333   667999999999             55666677777788999999999999988888888888


Q ss_pred             HHhCCceEEEEeccCCCCc
Q 031293           93 ERSQTKYQVVLTKTDTVFP  111 (162)
Q Consensus        93 ~~~~~~~ivv~nK~Dl~~~  111 (162)
                      ...++|+++++||+|+...
T Consensus       122 ~~~~~p~iv~iNK~D~~~~  140 (691)
T PRK12739        122 DKYGVPRIVFVNKMDRIGA  140 (691)
T ss_pred             HHcCCCEEEEEECCCCCCC
Confidence            8889999999999999843

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=99.52  E-value=3.7e-13  Score=93.25  Aligned_cols=66  Identities=18%  Similarity=0.244  Sum_probs=54.6

Q ss_pred             CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCC
Q 031293           31 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV  109 (162)
Q Consensus        31 ~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~  109 (162)
                      ..+.++||||+             ..+........+.+|++++|+|+.++....+..++..+...++|+++|+||+|+.
T Consensus        73 ~~i~iiDTPG~-------------~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~~~p~ilviNKiD~~  138 (222)
T cd01885          73 YLINLIDSPGH-------------VDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKERVKPVLVINKIDRL  138 (222)
T ss_pred             eEEEEECCCCc-------------cccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCcc
Confidence            45889999999             4555555666677899999999999888888778777777789999999999975

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>cd04109 Rab28 Rab28 subfamily

Probab=99.52  E-value=4.7e-13  Score=92.62  Aligned_cols=108  Identities=20%  Similarity=0.201  Sum_probs=69.3

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHHHHHHh------CCceEEEEe
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS------QTKYQVVLT  104 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~~l~~~------~~~~ivv~n  104 (162)
                      .+.++||||.          +.+..+...++   +.+|++++|+|...+-+-.. ..+...+...      +.|+++|.|
T Consensus        51 ~~~i~Dt~G~----------~~~~~l~~~~~---~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgN  117 (215)
T cd04109          51 TLQVWDIGGQ----------SIGGKMLDKYI---YGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGN  117 (215)
T ss_pred             EEEEEECCCc----------HHHHHHHHHHh---hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEE
Confidence            4789999998          22344455554   34699999999876422222 1233333322      357899999


Q ss_pred             ccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293          105 KTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  157 (162)
Q Consensus       105 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~  157 (162)
                      |+|+........  +..++.....+   .+++++||++|.|++++++++.+.+
T Consensus       118 K~DL~~~~~v~~--~~~~~~~~~~~---~~~~~iSAktg~gv~~lf~~l~~~l  165 (215)
T cd04109         118 KTDLEHNRTVKD--DKHARFAQANG---MESCLVSAKTGDRVNLLFQQLAAEL  165 (215)
T ss_pred             CcccccccccCH--HHHHHHHHHcC---CEEEEEECCCCCCHHHHHHHHHHHH
Confidence            999974322211  12223333333   4789999999999999999998765

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>PTZ00099 rab6; Provisional

Probab=99.52  E-value=1.7e-13  Score=91.92  Aligned_cols=108  Identities=18%  Similarity=0.147  Sum_probs=70.0

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCC--CccHHHHHHHH-HH--hCCceEEEEecc
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV--KPRDHELISLM-ER--SQTKYQVVLTKT  106 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~--~~~~~~~~~~l-~~--~~~~~ivv~nK~  106 (162)
                      ++.+|||||+          +.+..+...++   +.+|++++|.|...+.  .... .++..+ ..  .+.|+++|.||+
T Consensus        30 ~l~iwDt~G~----------e~~~~~~~~~~---~~ad~~ilv~D~t~~~sf~~~~-~w~~~i~~~~~~~~piilVgNK~   95 (176)
T PTZ00099         30 RLQLWDTAGQ----------ERFRSLIPSYI---RDSAAAIVVYDITNRQSFENTT-KWIQDILNERGKDVIIALVGNKT   95 (176)
T ss_pred             EEEEEECCCh----------HHhhhccHHHh---CCCcEEEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCeEEEEEECc
Confidence            5889999999          23344455554   4569999999987642  2222 233333 32  247889999999


Q ss_pred             CCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293          107 DTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR  158 (162)
Q Consensus       107 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~  158 (162)
                      |+.+...+..  +.........+   ..++++||++|.|+++++++|.+.+.
T Consensus        96 DL~~~~~v~~--~e~~~~~~~~~---~~~~e~SAk~g~nV~~lf~~l~~~l~  142 (176)
T PTZ00099         96 DLGDLRKVTY--EEGMQKAQEYN---TMFHETSAKAGHNIKVLFKKIAAKLP  142 (176)
T ss_pred             ccccccCCCH--HHHHHHHHHcC---CEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            9964322111  11222223232   36889999999999999999998764

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.52  E-value=4.2e-13  Score=87.85  Aligned_cols=138  Identities=17%  Similarity=0.173  Sum_probs=78.3

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEe-CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCC
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKL-GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW   79 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~-~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~   79 (162)
                      |+|+|++.. .. ....|....+...... +..+.++|+||+          ..+......++   ..+|++++|+|+..
T Consensus        15 l~~~l~~~~-~~-~~~~~t~~~~~~~~~~~~~~~~~~D~~g~----------~~~~~~~~~~~---~~~d~ii~v~d~~~   79 (159)
T cd04159          15 LVNVIAGGQ-FS-EDTIPTVGFNMRKVTKGNVTLKVWDLGGQ----------PRFRSMWERYC---RGVNAIVYVVDAAD   79 (159)
T ss_pred             HHHHHccCC-CC-cCccCCCCcceEEEEECCEEEEEEECCCC----------HhHHHHHHHHH---hcCCEEEEEEECCC
Confidence            467777762 22 2223322222222222 335889999998          22233344443   34599999999875


Q ss_pred             CCCc--cHHHHHHHHH---HhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHH
Q 031293           80 GVKP--RDHELISLME---RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLS  154 (162)
Q Consensus        80 ~~~~--~~~~~~~~l~---~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~  154 (162)
                      ...-  ...++...+.   ..++|+++|+||+|+.+.....+..+.+.  +........+++++|+++|.|+++++.+|.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  157 (159)
T cd04159          80 RTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQMN--LKSITDREVSCYSISCKEKTNIDIVLDWLI  157 (159)
T ss_pred             HHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHHHHHHHhC--cccccCCceEEEEEEeccCCChHHHHHHHh
Confidence            3211  1111222222   13689999999999875433222221211  111112235789999999999999999987


Q ss_pred             H
Q 031293          155 K  155 (162)
Q Consensus       155 ~  155 (162)
                      +
T Consensus       158 ~  158 (159)
T cd04159         158 K  158 (159)
T ss_pred             h
Confidence            5

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>cd04140 ARHI_like ARHI subfamily

Probab=99.51  E-value=2.7e-13  Score=89.96  Aligned_cols=107  Identities=13%  Similarity=0.098  Sum_probs=66.4

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHHHHHH------hCCceEEEEe
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER------SQTKYQVVLT  104 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~~l~~------~~~~~ivv~n  104 (162)
                      .+.++||||...          +..+...++   ..++++++|.|.....+-.. ..++..+..      .++|+++|.|
T Consensus        50 ~l~i~Dt~G~~~----------~~~~~~~~~---~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~n  116 (165)
T cd04140          50 TLQITDTTGSHQ----------FPAMQRLSI---SKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGN  116 (165)
T ss_pred             EEEEEECCCCCc----------chHHHHHHh---hcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEE
Confidence            478999999822          122233333   34589999999876432211 223333433      3589999999


Q ss_pred             ccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHh
Q 031293          105 KTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKI  156 (162)
Q Consensus       105 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~  156 (162)
                      |+|+....++..  +.........   ..+++++||++|.|+++++++|.+.
T Consensus       117 K~Dl~~~~~v~~--~~~~~~~~~~---~~~~~e~SA~~g~~v~~~f~~l~~~  163 (165)
T cd04140         117 KCDESHKREVSS--NEGAACATEW---NCAFMETSAKTNHNVQELFQELLNL  163 (165)
T ss_pred             CccccccCeecH--HHHHHHHHHh---CCcEEEeecCCCCCHHHHHHHHHhc
Confidence            999965222211  1111122222   2488999999999999999998753

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>cd04175 Rap1 Rap1 subgroup

Probab=99.51  E-value=2e-13  Score=90.42  Aligned_cols=108  Identities=14%  Similarity=0.092  Sum_probs=67.4

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHHHHH----HhCCceEEEEecc
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLME----RSQTKYQVVLTKT  106 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~~l~----~~~~~~ivv~nK~  106 (162)
                      .+.++||||.          +.+..+...+++.   +|+++++.|.....+-.. ..++..+.    ..+.|+++|+||+
T Consensus        50 ~l~i~Dt~G~----------~~~~~~~~~~~~~---~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~  116 (164)
T cd04175          50 MLEILDTAGT----------EQFTAMRDLYMKN---GQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKC  116 (164)
T ss_pred             EEEEEECCCc----------ccchhHHHHHHhh---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECC
Confidence            4679999998          2234444555443   489999999765322111 12233322    1358999999999


Q ss_pred             CCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293          107 DTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  157 (162)
Q Consensus       107 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~  157 (162)
                      |+........  +...+.....+   .+++++||++|.|+++++.++.+.+
T Consensus       117 Dl~~~~~~~~--~~~~~~~~~~~---~~~~~~Sa~~~~~v~~~~~~l~~~l  162 (164)
T cd04175         117 DLEDERVVGK--EQGQNLARQWG---CAFLETSAKAKINVNEIFYDLVRQI  162 (164)
T ss_pred             cchhccEEcH--HHHHHHHHHhC---CEEEEeeCCCCCCHHHHHHHHHHHh
Confidence            9964322111  11122222222   4899999999999999999998755

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>cd04144 Ras2 Ras2 subfamily

Probab=99.51  E-value=4.7e-13  Score=90.88  Aligned_cols=108  Identities=13%  Similarity=0.156  Sum_probs=68.2

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHHHHHH------hCCceEEEEe
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER------SQTKYQVVLT  104 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~~l~~------~~~~~ivv~n  104 (162)
                      .+.+|||||.          +.+..+...++.   .+|++++|.|.....+-.. ..++..+..      .++|+++|+|
T Consensus        48 ~l~i~Dt~G~----------~~~~~~~~~~~~---~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgN  114 (190)
T cd04144          48 MLEVLDTAGQ----------EEYTALRDQWIR---EGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGN  114 (190)
T ss_pred             EEEEEECCCc----------hhhHHHHHHHHH---hCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEE
Confidence            3789999998          222333444443   4599999999865432111 223333322      3579999999


Q ss_pred             ccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293          105 KTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  157 (162)
Q Consensus       105 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~  157 (162)
                      |+|+........  +...+.....+   .+++++||++|.|+++++.++.+.+
T Consensus       115 K~Dl~~~~~v~~--~~~~~~~~~~~---~~~~e~SAk~~~~v~~l~~~l~~~l  162 (190)
T cd04144         115 KCDKVYEREVST--EEGAALARRLG---CEFIEASAKTNVNVERAFYTLVRAL  162 (190)
T ss_pred             ChhccccCccCH--HHHHHHHHHhC---CEEEEecCCCCCCHHHHHHHHHHHH
Confidence            999964332211  11222222222   4799999999999999999998754

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=99.51  E-value=3.3e-13  Score=89.11  Aligned_cols=108  Identities=13%  Similarity=0.080  Sum_probs=67.8

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCC--ccHHHHHHHHHH---hCCceEEEEecc
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVK--PRDHELISLMER---SQTKYQVVLTKT  106 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~--~~~~~~~~~l~~---~~~~~ivv~nK~  106 (162)
                      .+.++||||+          +.+......+++   .++++++++|...+-+  ....++..+...   .++|+++|+||+
T Consensus        49 ~~~i~D~~g~----------~~~~~~~~~~~~---~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~  115 (164)
T cd04139          49 QLNILDTAGQ----------EDYAAIRDNYHR---SGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKC  115 (164)
T ss_pred             EEEEEECCCh----------hhhhHHHHHHhh---cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEcc
Confidence            4889999998          222334444443   4488888888765321  112222223332   469999999999


Q ss_pred             CCCCcH-HHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293          107 DTVFPI-DVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR  158 (162)
Q Consensus       107 Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~  158 (162)
                      |+.... ....   .........+   .+++++||++|.|+++++.++.+.+.
T Consensus       116 D~~~~~~~~~~---~~~~~~~~~~---~~~~~~Sa~~~~gi~~l~~~l~~~~~  162 (164)
T cd04139         116 DLEDKRQVSSE---EAANLARQWG---VPYVETSAKTRQNVEKAFYDLVREIR  162 (164)
T ss_pred             ccccccccCHH---HHHHHHHHhC---CeEEEeeCCCCCCHHHHHHHHHHHHH
Confidence            997522 1111   1222222222   48999999999999999999987653

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.51  E-value=4.7e-13  Score=89.00  Aligned_cols=106  Identities=13%  Similarity=0.040  Sum_probs=67.9

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHH-HHHHHHHHh--CCceEEEEeccCC
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDH-ELISLMERS--QTKYQVVLTKTDT  108 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~-~~~~~l~~~--~~~~ivv~nK~Dl  108 (162)
                      .+.++||||...          +..+...++   ..+|++++|+|...+.+-... .++..+...  ++|+++|.||+|+
T Consensus        50 ~l~i~Dt~G~~~----------~~~~~~~~~---~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl  116 (166)
T cd00877          50 RFNVWDTAGQEK----------FGGLRDGYY---IGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDI  116 (166)
T ss_pred             EEEEEECCCChh----------hccccHHHh---cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhc
Confidence            588999999822          122223333   346999999998764322222 233334322  6999999999999


Q ss_pred             CCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293          109 VFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  157 (162)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~  157 (162)
                      .... ....   ..+....   ...+++++||++|.|+++++.+|.+.+
T Consensus       117 ~~~~-~~~~---~~~~~~~---~~~~~~e~Sa~~~~~v~~~f~~l~~~~  158 (166)
T cd00877         117 KDRK-VKAK---QITFHRK---KNLQYYEISAKSNYNFEKPFLWLARKL  158 (166)
T ss_pred             cccc-CCHH---HHHHHHH---cCCEEEEEeCCCCCChHHHHHHHHHHH
Confidence            7322 1111   1112222   235899999999999999999998755

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>COG3596 Predicted GTPase [General function prediction only]

Probab=99.50  E-value=3.7e-13  Score=93.81  Aligned_cols=150  Identities=25%  Similarity=0.254  Sum_probs=96.4

Q ss_pred             ChhcccCCCCceeccCCCCcc----eEEEEEEeCCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEee
Q 031293            1 MLNALTRQWGVVRTSDKPGLT----QTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLID   76 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t----~~~~~~~~~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid   76 (162)
                      |||+|++. +...++..+-.|    +....+. +..+++|||||+|+....+   ..+...+.+++.+   .|+++++++
T Consensus        55 liNALF~~-~~~~v~~vg~~t~~~~~~~~~~~-~~~l~lwDtPG~gdg~~~D---~~~r~~~~d~l~~---~DLvL~l~~  126 (296)
T COG3596          55 LINALFQG-EVKEVSKVGVGTDITTRLRLSYD-GENLVLWDTPGLGDGKDKD---AEHRQLYRDYLPK---LDLVLWLIK  126 (296)
T ss_pred             HHHHHHhc-cCceeeecccCCCchhhHHhhcc-ccceEEecCCCcccchhhh---HHHHHHHHHHhhh---ccEEEEecc
Confidence            68999976 456666554333    2333333 3569999999998864322   1223444455444   499999999


Q ss_pred             cCCCCCccHHHHHHHHHH--hCCceEEEEeccCCCCcH-HH--------HHHHHHHHHH---HHhcCCCCCCeEEeecCC
Q 031293           77 TKWGVKPRDHELISLMER--SQTKYQVVLTKTDTVFPI-DV--------ARRAMQIEES---LKANNSLVQPVMMVSSKS  142 (162)
Q Consensus        77 ~~~~~~~~~~~~~~~l~~--~~~~~ivv~nK~Dl~~~~-~~--------~~~~~~~~~~---~~~~~~~~~~i~~~Sa~~  142 (162)
                      +.++.-..+..++..+..  .+.|+++++|.+|...+. ++        ..+.+.+++.   +.......-|++..|...
T Consensus       127 ~~draL~~d~~f~~dVi~~~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~~q~V~pV~~~~~r~  206 (296)
T COG3596         127 ADDRALGTDEDFLRDVIILGLDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGRLFQEVKPVVAVSGRL  206 (296)
T ss_pred             CCCccccCCHHHHHHHHHhccCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHhhcCCeEEecccc
Confidence            988776777776654432  247899999999976442 11        1222222221   222222345888888899


Q ss_pred             CCCHHHHHHHHHHhhh
Q 031293          143 GAGIRSLRTVLSKIAR  158 (162)
Q Consensus       143 ~~g~~~l~~~i~~~~~  158 (162)
                      +.|++++..++.++++
T Consensus       207 ~wgl~~l~~ali~~lp  222 (296)
T COG3596         207 PWGLKELVRALITALP  222 (296)
T ss_pred             CccHHHHHHHHHHhCc
Confidence            9999999999998776

>PTZ00369 Ras-like protein; Provisional

Probab=99.50  E-value=2.1e-13  Score=92.52  Aligned_cols=108  Identities=14%  Similarity=0.094  Sum_probs=67.6

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHHHHHH----hCCceEEEEecc
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKT  106 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~~l~~----~~~~~ivv~nK~  106 (162)
                      .+.++||||+.          .+..+...++.   .++++++|.|+..+-+-.. ..+...+..    .++|+++|.||+
T Consensus        54 ~l~i~Dt~G~~----------~~~~l~~~~~~---~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~  120 (189)
T PTZ00369         54 LLDILDTAGQE----------EYSAMRDQYMR---TGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKC  120 (189)
T ss_pred             EEEEEeCCCCc----------cchhhHHHHhh---cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECc
Confidence            47799999982          22444444543   4599999999876432111 122222221    267999999999


Q ss_pred             CCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293          107 DTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  157 (162)
Q Consensus       107 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~  157 (162)
                      |+........  +...+.....+   .+++++||++|.|+++++.+|.+.+
T Consensus       121 Dl~~~~~i~~--~~~~~~~~~~~---~~~~e~Sak~~~gi~~~~~~l~~~l  166 (189)
T PTZ00369        121 DLDSERQVST--GEGQELAKSFG---IPFLETSAKQRVNVDEAFYELVREI  166 (189)
T ss_pred             ccccccccCH--HHHHHHHHHhC---CEEEEeeCCCCCCHHHHHHHHHHHH
Confidence            9864322211  11122222222   4899999999999999999998654

>cd04116 Rab9 Rab9 subfamily

Probab=99.50  E-value=1.1e-12  Score=87.35  Aligned_cols=107  Identities=11%  Similarity=0.046  Sum_probs=66.7

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCC--CccHHHHHHHHH------HhCCceEEEE
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV--KPRDHELISLME------RSQTKYQVVL  103 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~--~~~~~~~~~~l~------~~~~~~ivv~  103 (162)
                      ++.++||||+          +.+..+...+++   .+|+++++.|...+-  .....+....+.      ..++|+++|+
T Consensus        55 ~l~i~D~~G~----------~~~~~~~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~  121 (170)
T cd04116          55 TLQIWDTAGQ----------ERFRSLRTPFYR---GSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLG  121 (170)
T ss_pred             EEEEEeCCCh----------HHHHHhHHHHhc---CCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEE
Confidence            4779999998          333444555543   458888888876432  221111111221      1257999999


Q ss_pred             eccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHh
Q 031293          104 TKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKI  156 (162)
Q Consensus       104 nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~  156 (162)
                      ||+|+.......   +.+++.+...+  ..+++++||++|.|++++++.+.+.
T Consensus       122 nK~Dl~~~~~~~---~~~~~~~~~~~--~~~~~e~Sa~~~~~v~~~~~~~~~~  169 (170)
T cd04116         122 NKNDIPERQVST---EEAQAWCRENG--DYPYFETSAKDATNVAAAFEEAVRR  169 (170)
T ss_pred             ECccccccccCH---HHHHHHHHHCC--CCeEEEEECCCCCCHHHHHHHHHhh
Confidence            999986322111   23333344333  2489999999999999999998754

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>cd04118 Rab24 Rab24 subfamily

Probab=99.50  E-value=6.9e-13  Score=90.16  Aligned_cols=110  Identities=15%  Similarity=0.095  Sum_probs=68.7

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHHHHHHh--CCceEEEEeccCC
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS--QTKYQVVLTKTDT  108 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~~l~~~--~~~~ivv~nK~Dl  108 (162)
                      .+.+|||||..          .+..+...++   +.+|++++|+|.....+-.. ..++..+...  +.|+++|+||+|+
T Consensus        51 ~l~i~D~~G~~----------~~~~~~~~~~---~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl  117 (193)
T cd04118          51 TLGIWDTAGSE----------RYEAMSRIYY---RGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDL  117 (193)
T ss_pred             EEEEEECCCch----------hhhhhhHhhc---CCCCEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEcccc
Confidence            36799999982          2233333333   34699999999876422111 2244444433  5899999999998


Q ss_pred             CCcHHH--HHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293          109 VFPIDV--ARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  157 (162)
Q Consensus       109 ~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~  157 (162)
                      ......  ....+.+.+.....+   .+++++||++|.|++++++++.+.+
T Consensus       118 ~~~~~~~~~v~~~~~~~~~~~~~---~~~~~~Sa~~~~gv~~l~~~i~~~~  165 (193)
T cd04118         118 IEQDRSLRQVDFHDVQDFADEIK---AQHFETSSKTGQNVDELFQKVAEDF  165 (193)
T ss_pred             cccccccCccCHHHHHHHHHHcC---CeEEEEeCCCCCCHHHHHHHHHHHH
Confidence            643211  000122333333222   4789999999999999999998755

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>cd04128 Spg1 Spg1p

Probab=99.50  E-value=2.2e-12  Score=87.01  Aligned_cols=110  Identities=14%  Similarity=0.110  Sum_probs=67.7

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHH-HHHHHHHH---hCCceEEEEeccC
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDH-ELISLMER---SQTKYQVVLTKTD  107 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~-~~~~~l~~---~~~~~ivv~nK~D  107 (162)
                      .+.+|||+|.          +.+..+...+   .+.+|++++|.|..+..+-... .++..+..   ...| ++|.||+|
T Consensus        50 ~l~iwDt~G~----------~~~~~~~~~~---~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~D  115 (182)
T cd04128          50 TFSIWDLGGQ----------REFINMLPLV---CNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYD  115 (182)
T ss_pred             EEEEEeCCCc----------hhHHHhhHHH---CcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchh
Confidence            4889999998          2223333333   3456999999998764322221 23333433   2355 67899999


Q ss_pred             CCCc---HHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293          108 TVFP---IDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR  158 (162)
Q Consensus       108 l~~~---~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~  158 (162)
                      +...   .......+..++.....+   .+++++||++|.|+++++.++.+.+.
T Consensus       116 l~~~~~~~~~~~~~~~~~~~a~~~~---~~~~e~SAk~g~~v~~lf~~l~~~l~  166 (182)
T cd04128         116 LFADLPPEEQEEITKQARKYAKAMK---APLIFCSTSHSINVQKIFKIVLAKAF  166 (182)
T ss_pred             ccccccchhhhhhHHHHHHHHHHcC---CEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            9621   111111223333333333   48999999999999999999987553

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>cd04123 Rab21 Rab21 subfamily

Probab=99.49  E-value=7.1e-13  Score=87.26  Aligned_cols=108  Identities=21%  Similarity=0.187  Sum_probs=68.3

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHH-HHHHHHHHh---CCceEEEEeccC
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDH-ELISLMERS---QTKYQVVLTKTD  107 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~-~~~~~l~~~---~~~~ivv~nK~D  107 (162)
                      .+.++|+||.          +.+......++   ..+|++++|+|+.++.+-... .++..+...   ++|+++|+||+|
T Consensus        50 ~~~~~D~~g~----------~~~~~~~~~~~---~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D  116 (162)
T cd04123          50 DLAIWDTAGQ----------ERYHALGPIYY---RDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKID  116 (162)
T ss_pred             EEEEEECCch----------HHHHHhhHHHh---ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcc
Confidence            4889999997          22233333333   346999999998764322111 222333322   589999999999


Q ss_pred             CCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293          108 TVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  157 (162)
Q Consensus       108 l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~  157 (162)
                      +........  +.+.+.....+   .+++++||+++.|+++++.++.+.+
T Consensus       117 ~~~~~~~~~--~~~~~~~~~~~---~~~~~~s~~~~~gi~~~~~~l~~~~  161 (162)
T cd04123         117 LERQRVVSK--SEAEEYAKSVG---AKHFETSAKTGKGIEELFLSLAKRM  161 (162)
T ss_pred             cccccCCCH--HHHHHHHHHcC---CEEEEEeCCCCCCHHHHHHHHHHHh
Confidence            874332211  12223333332   4789999999999999999997653

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=99.49  E-value=6.8e-13  Score=88.73  Aligned_cols=108  Identities=15%  Similarity=0.089  Sum_probs=70.2

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHH-HHHHHHHH----hCCceEEEEecc
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDH-ELISLMER----SQTKYQVVLTKT  106 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~-~~~~~l~~----~~~~~ivv~nK~  106 (162)
                      .+.++||||.          +.+..+...++.   .+|++++|.|..++.+-... ++...+..    .++|+++|.||+
T Consensus        51 ~l~i~Dt~G~----------~~~~~l~~~~~~---~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~  117 (172)
T cd04141          51 LLDILDTAGQ----------AEFTAMRDQYMR---CGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKV  117 (172)
T ss_pred             EEEEEeCCCc----------hhhHHHhHHHhh---cCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEECh
Confidence            4889999998          223444555544   45999999998765433222 22233332    358999999999


Q ss_pred             CCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293          107 DTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  157 (162)
Q Consensus       107 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~  157 (162)
                      |+.+...+..  +...+.....+   .+++++||++|.|++++++++.+.+
T Consensus       118 Dl~~~~~v~~--~~~~~~a~~~~---~~~~e~Sa~~~~~v~~~f~~l~~~~  163 (172)
T cd04141         118 DLESQRQVTT--EEGRNLAREFN---CPFFETSAALRHYIDDAFHGLVREI  163 (172)
T ss_pred             hhhhcCccCH--HHHHHHHHHhC---CEEEEEecCCCCCHHHHHHHHHHHH
Confidence            9864332211  12222333332   4899999999999999999998654

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>cd04147 Ras_dva Ras-dva subfamily

Probab=99.49  E-value=4.9e-13  Score=91.36  Aligned_cols=110  Identities=14%  Similarity=0.046  Sum_probs=67.1

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHH-HHHHHHHH----hCCceEEEEecc
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDH-ELISLMER----SQTKYQVVLTKT  106 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~-~~~~~l~~----~~~~~ivv~nK~  106 (162)
                      ++.++|+||+.          .+..+...+   ...+|++++|+|+.++.+-... .++..+..    .++|+++|+||+
T Consensus        48 ~l~i~D~~G~~----------~~~~~~~~~---~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~  114 (198)
T cd04147          48 TLDILDTSGSY----------SFPAMRKLS---IQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKA  114 (198)
T ss_pred             EEEEEECCCch----------hhhHHHHHH---hhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEcc
Confidence            58899999981          122222333   2456999999998764222111 12222222    368999999999


Q ss_pred             CCCCc-HHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293          107 DTVFP-IDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR  158 (162)
Q Consensus       107 Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~  158 (162)
                      |+... .....  +...+.....  ...+++++||++|.|++++++++.+.+.
T Consensus       115 Dl~~~~~~v~~--~~~~~~~~~~--~~~~~~~~Sa~~g~gv~~l~~~l~~~~~  163 (198)
T cd04147         115 DSLEEERQVPA--KDALSTVELD--WNCGFVETSAKDNENVLEVFKELLRQAN  163 (198)
T ss_pred             ccccccccccH--HHHHHHHHhh--cCCcEEEecCCCCCCHHHHHHHHHHHhh
Confidence            98752 21111  1111122111  1147899999999999999999987654

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04125 RabA_like RabA-like subfamily

Probab=99.49  E-value=1.3e-12  Score=88.46  Aligned_cols=138  Identities=19%  Similarity=0.176  Sum_probs=79.3

Q ss_pred             ChhcccCCCCcee-ccCCCCcceEEEEEEeCC---ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEee
Q 031293            1 MLNALTRQWGVVR-TSDKPGLTQTINFFKLGT---KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLID   76 (162)
Q Consensus         1 lin~L~~~~~~~~-~~~~~g~t~~~~~~~~~~---~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid   76 (162)
                      |+|++.+. .... ..+..|.+........+.   .+.++||||.          +.+......++   +.+|++++|.|
T Consensus        16 li~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~----------~~~~~~~~~~~---~~~d~iilv~d   81 (188)
T cd04125          16 LLKRFTED-EFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQ----------ERFRSLNNSYY---RGAHGYLLVYD   81 (188)
T ss_pred             HHHHHhcC-CCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCc----------HHHHhhHHHHc---cCCCEEEEEEE
Confidence            46777666 2221 233333333223333322   4679999998          22233333343   45699999999


Q ss_pred             cCCCCCccH-HHHHHHHHH---hCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHH
Q 031293           77 TKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTV  152 (162)
Q Consensus        77 ~~~~~~~~~-~~~~~~l~~---~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~  152 (162)
                      ...+-+-.. ..++..+..   ...|+++++||+|+.+......  +.........+   .+++++||++|.|+++++.+
T Consensus        82 ~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~--~~~~~~~~~~~---~~~~evSa~~~~~i~~~f~~  156 (188)
T cd04125          82 VTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDS--NIAKSFCDSLN---IPFFETSAKQSINVEEAFIL  156 (188)
T ss_pred             CcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCH--HHHHHHHHHcC---CeEEEEeCCCCCCHHHHHHH
Confidence            876422111 113333332   2478999999999874332211  11112222222   38999999999999999999


Q ss_pred             HHHhh
Q 031293          153 LSKIA  157 (162)
Q Consensus       153 i~~~~  157 (162)
                      +.+.+
T Consensus       157 l~~~~  161 (188)
T cd04125         157 LVKLI  161 (188)
T ss_pred             HHHHH
Confidence            98765

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=99.48  E-value=2.5e-13  Score=90.14  Aligned_cols=110  Identities=13%  Similarity=0.131  Sum_probs=67.0

Q ss_pred             CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCcc-HHHHH-HHHHH-hCCceEEEEecc
Q 031293           30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPR-DHELI-SLMER-SQTKYQVVLTKT  106 (162)
Q Consensus        30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~-~~~~~-~~l~~-~~~~~ivv~nK~  106 (162)
                      +.++.++||||...          +......++   +++|++++|+|+....+-. ...++ ..+.. .++|+++|.||+
T Consensus        43 ~~~l~i~Dt~G~~~----------~~~~~~~~~---~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~~~~piilv~NK~  109 (164)
T cd04162          43 DAIMELLEIGGSQN----------LRKYWKRYL---SGSQGLIFVVDSADSERLPLARQELHQLLQHPPDLPLVVLANKQ  109 (164)
T ss_pred             CeEEEEEECCCCcc----------hhHHHHHHH---hhCCEEEEEEECCCHHHHHHHHHHHHHHHhCCCCCcEEEEEeCc
Confidence            44689999999822          133333443   3459999999987643111 11122 22222 468999999999


Q ss_pred             CCCCcHHHHHHHHHH--HHHHHhcCCCCCCeEEeecCC------CCCHHHHHHHHHH
Q 031293          107 DTVFPIDVARRAMQI--EESLKANNSLVQPVMMVSSKS------GAGIRSLRTVLSK  155 (162)
Q Consensus       107 Dl~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~Sa~~------~~g~~~l~~~i~~  155 (162)
                      |+......+...+..  ......   ..++++++||++      ++|+.++++.+.+
T Consensus       110 Dl~~~~~~~~i~~~~~~~~~~~~---~~~~~~~~Sa~~~~s~~~~~~v~~~~~~~~~  163 (164)
T cd04162         110 DLPAARSVQEIHKELELEPIARG---RRWILQGTSLDDDGSPSRMEAVKDLLSQLIN  163 (164)
T ss_pred             CCcCCCCHHHHHHHhCChhhcCC---CceEEEEeeecCCCChhHHHHHHHHHHHHhc
Confidence            987544333222121  111111   235788899888      9999999988764

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=99.48  E-value=1.2e-12  Score=86.61  Aligned_cols=108  Identities=18%  Similarity=0.186  Sum_probs=69.6

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHHHHHHh--CCceEEEEeccCC
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS--QTKYQVVLTKTDT  108 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~~l~~~--~~~~ivv~nK~Dl  108 (162)
                      ++.++||||.          +.+..+...++   ..+|++++|+|.+...+-.. ..++..+...  ++|+++|+||+|+
T Consensus        53 ~l~i~Dt~G~----------~~~~~~~~~~~---~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl  119 (164)
T cd04101          53 ELFIFDSAGQ----------ELYSDMVSNYW---ESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDL  119 (164)
T ss_pred             EEEEEECCCH----------HHHHHHHHHHh---CCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccc
Confidence            5889999998          33344444444   45699999999876422111 2233444333  5899999999999


Q ss_pred             CCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293          109 VFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  157 (162)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~  157 (162)
                      .+.......  ..+......+   .+++++||++|.|++++++.+.+.+
T Consensus       120 ~~~~~~~~~--~~~~~~~~~~---~~~~~~Sa~~~~gi~~l~~~l~~~~  163 (164)
T cd04101         120 ADKAEVTDA--QAQAFAQANQ---LKFFKTSALRGVGYEEPFESLARAF  163 (164)
T ss_pred             ccccCCCHH--HHHHHHHHcC---CeEEEEeCCCCCChHHHHHHHHHHh
Confidence            654322211  1111222222   4789999999999999999998754

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=99.48  E-value=7e-13  Score=91.98  Aligned_cols=106  Identities=13%  Similarity=0.074  Sum_probs=68.0

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHHHHHH--hCCceEEEEeccCC
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER--SQTKYQVVLTKTDT  108 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~~l~~--~~~~~ivv~nK~Dl  108 (162)
                      ++.+|||||..          .+..+...++   +.++++++|+|.....+-.. ..++..+..  .++|+++|.||+|+
T Consensus        63 ~l~i~Dt~G~~----------~~~~~~~~~~---~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~~~piilvgNK~Dl  129 (219)
T PLN03071         63 RFYCWDTAGQE----------KFGGLRDGYY---IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDV  129 (219)
T ss_pred             EEEEEECCCch----------hhhhhhHHHc---ccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhh
Confidence            58899999982          2233344443   34589999999876432222 123333332  35899999999998


Q ss_pred             CCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293          109 VFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  157 (162)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~  157 (162)
                      .......+   .+ +.....   ..+++++||++|.|+++++.+|.+.+
T Consensus       130 ~~~~v~~~---~~-~~~~~~---~~~~~e~SAk~~~~i~~~f~~l~~~~  171 (219)
T PLN03071        130 KNRQVKAK---QV-TFHRKK---NLQYYEISAKSNYNFEKPFLYLARKL  171 (219)
T ss_pred             hhccCCHH---HH-HHHHhc---CCEEEEcCCCCCCCHHHHHHHHHHHH
Confidence            53221111   11 222222   25889999999999999999998655

>cd04114 Rab30 Rab30 subfamily

Probab=99.47  E-value=1.1e-12  Score=87.11  Aligned_cols=107  Identities=19%  Similarity=0.171  Sum_probs=67.1

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHHHHHH---hCCceEEEEeccC
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTD  107 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~~l~~---~~~~~ivv~nK~D  107 (162)
                      .+.++|+||+          +.+......++   ..+|++++++|+..+.+... ..++..+..   .+.|+++|+||+|
T Consensus        57 ~~~~~D~~g~----------~~~~~~~~~~~---~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D  123 (169)
T cd04114          57 KLQIWDTAGQ----------ERFRSITQSYY---RSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKID  123 (169)
T ss_pred             EEEEEECCCc----------HHHHHHHHHHh---cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcc
Confidence            4788999998          22233334443   34699999999875422111 123333332   3588999999999


Q ss_pred             CCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHh
Q 031293          108 TVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKI  156 (162)
Q Consensus       108 l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~  156 (162)
                      +.+..+....   ..+.+.....  .+++++||++|.|+++++.+|.+.
T Consensus       124 ~~~~~~i~~~---~~~~~~~~~~--~~~~~~Sa~~~~gv~~l~~~i~~~  167 (169)
T cd04114         124 LAERREVSQQ---RAEEFSDAQD--MYYLETSAKESDNVEKLFLDLACR  167 (169)
T ss_pred             cccccccCHH---HHHHHHHHcC--CeEEEeeCCCCCCHHHHHHHHHHH
Confidence            8754332211   1111222211  589999999999999999999864

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>PRK00007 elongation factor G; Reviewed

Probab=99.47  E-value=3.8e-13  Score=107.10  Aligned_cols=112  Identities=19%  Similarity=0.228  Sum_probs=85.4

Q ss_pred             CCCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHH
Q 031293           16 DKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLM   92 (162)
Q Consensus        16 ~~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l   92 (162)
                      ..+|+|.+.....+   +.++.++||||+             ..+..+...+.+.+|++++|+|+.+++..++..++..+
T Consensus        57 ~~rg~ti~~~~~~~~~~~~~~~liDTPG~-------------~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~  123 (693)
T PRK00007         57 QERGITITSAATTCFWKDHRINIIDTPGH-------------VDFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQA  123 (693)
T ss_pred             HhCCCCEeccEEEEEECCeEEEEEeCCCc-------------HHHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHH
Confidence            46788876554322   667999999999             55666677777788999999999999999999999999


Q ss_pred             HHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCC
Q 031293           93 ERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSG  143 (162)
Q Consensus        93 ~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~  143 (162)
                      ...++|.++++||+|+.... .....+.+++.+....  ....+++|+..+
T Consensus       124 ~~~~~p~iv~vNK~D~~~~~-~~~~~~~i~~~l~~~~--~~~~ipisa~~~  171 (693)
T PRK00007        124 DKYKVPRIAFVNKMDRTGAD-FYRVVEQIKDRLGANP--VPIQLPIGAEDD  171 (693)
T ss_pred             HHcCCCEEEEEECCCCCCCC-HHHHHHHHHHHhCCCe--eeEEecCccCCc
Confidence            98999999999999998544 4455566666655321  245667777665

>cd00157 Rho Rho (Ras homology) family

Probab=99.47  E-value=5.9e-13  Score=88.55  Aligned_cols=109  Identities=14%  Similarity=0.006  Sum_probs=68.5

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCc--cHHHHHHHHHHh--CCceEEEEeccC
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKP--RDHELISLMERS--QTKYQVVLTKTD  107 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~--~~~~~~~~l~~~--~~~~ivv~nK~D  107 (162)
                      .+.++||||+...          ......+   .+.+|++++++|+..+.+-  ....++..+...  ++|+++|+||+|
T Consensus        49 ~l~~~D~~g~~~~----------~~~~~~~---~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D  115 (171)
T cd00157          49 NLGLWDTAGQEEY----------DRLRPLS---YPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKID  115 (171)
T ss_pred             EEEEEeCCCcccc----------cccchhh---cCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHH
Confidence            4889999998321          1112222   2456999999998763221  122234444333  499999999999


Q ss_pred             CCCcHHHHH---------HHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHH
Q 031293          108 TVFPIDVAR---------RAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSK  155 (162)
Q Consensus       108 l~~~~~~~~---------~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~  155 (162)
                      +........         ..+...+.....+  ..+++++||++|.|+++++.+|.+
T Consensus       116 l~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~i~~  170 (171)
T cd00157         116 LRDDENTLKKLEKGKEPITPEEGEKLAKEIG--AIGYMECSALTQEGVKEVFEEAIR  170 (171)
T ss_pred             hhhchhhhhhcccCCCccCHHHHHHHHHHhC--CeEEEEeecCCCCCHHHHHHHHhh
Confidence            975543211         0122223333332  248999999999999999999875

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>PLN03108 Rab family protein; Provisional

Probab=99.46  E-value=2.7e-12  Score=88.54  Aligned_cols=108  Identities=14%  Similarity=0.119  Sum_probs=67.7

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHH-HHHHHHHH---hCCceEEEEeccC
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDH-ELISLMER---SQTKYQVVLTKTD  107 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~-~~~~~l~~---~~~~~ivv~nK~D  107 (162)
                      .+.++||||.          +.+......++   +.+|++++|.|+....+-... .++..+..   .++|+++|.||+|
T Consensus        56 ~l~l~Dt~G~----------~~~~~~~~~~~---~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~D  122 (210)
T PLN03108         56 KLQIWDTAGQ----------ESFRSITRSYY---RGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCD  122 (210)
T ss_pred             EEEEEeCCCc----------HHHHHHHHHHh---ccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcc
Confidence            4789999998          22233333443   346999999998764322221 22322222   2589999999999


Q ss_pred             CCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293          108 TVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  157 (162)
Q Consensus       108 l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~  157 (162)
                      +.+.....  .+..++.....+   .+++++||+++.|+++++.++...+
T Consensus       123 l~~~~~~~--~~~~~~~~~~~~---~~~~e~Sa~~~~~v~e~f~~l~~~~  167 (210)
T PLN03108        123 LAHRRAVS--TEEGEQFAKEHG---LIFMEASAKTAQNVEEAFIKTAAKI  167 (210)
T ss_pred             CccccCCC--HHHHHHHHHHcC---CEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            87532211  112223333332   4899999999999999998887644

>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.46  E-value=4.6e-13  Score=94.63  Aligned_cols=116  Identities=16%  Similarity=0.211  Sum_probs=97.3

Q ss_pred             CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCC-CCccHHHHHHHHHHhCC-ceEEEEeccC
Q 031293           30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG-VKPRDHELISLMERSQT-KYQVVLTKTD  107 (162)
Q Consensus        30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~-~~~~~~~~~~~l~~~~~-~~ivv~nK~D  107 (162)
                      -+.+.+||+|||             ..++..++.+....|.+++++.++++ +++++.+++..+.-+.. .++++.||+|
T Consensus       124 vRHVSfVDCPGH-------------DiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~LkhiiilQNKiD  190 (466)
T KOG0466|consen  124 VRHVSFVDCPGH-------------DILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMKLKHIIILQNKID  190 (466)
T ss_pred             EEEEEeccCCch-------------HHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhhhceEEEEechhh
Confidence            345899999999             78888898888888999999999875 45677778776665553 4899999999


Q ss_pred             CCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293          108 TVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR  158 (162)
Q Consensus       108 l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~  158 (162)
                      ++.++...++.+.+.+++........|++++||.-+.+++.+.++|...++
T Consensus       191 li~e~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIP  241 (466)
T KOG0466|consen  191 LIKESQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIP  241 (466)
T ss_pred             hhhHHHHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCC
Confidence            998888888888888888877666789999999999999999999987653

>cd04126 Rab20 Rab20 subfamily

Probab=99.46  E-value=1.5e-12  Score=90.17  Aligned_cols=114  Identities=17%  Similarity=0.131  Sum_probs=68.5

Q ss_pred             CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH--HHHHHHHHH--hCCceEEEEecc
Q 031293           31 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMER--SQTKYQVVLTKT  106 (162)
Q Consensus        31 ~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~--~~~~~~l~~--~~~~~ivv~nK~  106 (162)
                      .++.+|||||+.          .+..+...++   +.++++++|+|.....+-..  .++......  .++|+++|.||+
T Consensus        44 ~~l~iwDt~G~e----------~~~~l~~~~~---~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~  110 (220)
T cd04126          44 YNISIWDTAGRE----------QFHGLGSMYC---RGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKL  110 (220)
T ss_pred             EEEEEEeCCCcc----------cchhhHHHHh---ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECc
Confidence            348899999982          2233344443   35699999999876432222  222222222  257899999999


Q ss_pred             CCCCcH-----------------HHHHHHHHHHHHHHhcC-----------CCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293          107 DTVFPI-----------------DVARRAMQIEESLKANN-----------SLVQPVMMVSSKSGAGIRSLRTVLSKIA  157 (162)
Q Consensus       107 Dl~~~~-----------------~~~~~~~~~~~~~~~~~-----------~~~~~i~~~Sa~~~~g~~~l~~~i~~~~  157 (162)
                      |+....                 ...-..+...+.....+           ....+++++||++|.|+++++..+.+.+
T Consensus       111 DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~  189 (220)
T cd04126         111 DLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLV  189 (220)
T ss_pred             ccccccccccccccccccccccccccCCHHHHHHHHHHhCccccccccccccccceEEEeeCCCCCCHHHHHHHHHHHH
Confidence            996410                 00000112222222221           1125799999999999999999998654

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>cd04132 Rho4_like Rho4-like subfamily

Probab=99.46  E-value=6.7e-13  Score=89.76  Aligned_cols=112  Identities=14%  Similarity=0.075  Sum_probs=69.0

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHH--HHHHHHHH--hCCceEEEEeccC
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDH--ELISLMER--SQTKYQVVLTKTD  107 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~--~~~~~l~~--~~~~~ivv~nK~D  107 (162)
                      .+.++||||.          +.+..+...+   .+.+|++++|.|.....+-...  .++..+..  .+.|+++|.||+|
T Consensus        50 ~l~i~Dt~G~----------~~~~~~~~~~---~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D  116 (187)
T cd04132          50 ELALWDTAGQ----------EEYDRLRPLS---YPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTD  116 (187)
T ss_pred             EEEEEECCCc----------hhHHHHHHHh---CCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChh
Confidence            4789999998          2223322233   3456999999998764322221  12333322  3689999999999


Q ss_pred             CCCcHHHH--HHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293          108 TVFPIDVA--RRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR  158 (162)
Q Consensus       108 l~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~  158 (162)
                      +.......  -..+..++.....+  ..+++++||++|.|+++++..+.+.+.
T Consensus       117 l~~~~~~~~~v~~~~~~~~~~~~~--~~~~~e~Sa~~~~~v~~~f~~l~~~~~  167 (187)
T cd04132         117 LRKDKNLDRKVTPAQAESVAKKQG--AFAYLECSAKTMENVEEVFDTAIEEAL  167 (187)
T ss_pred             hhhCccccCCcCHHHHHHHHHHcC--CcEEEEccCCCCCCHHHHHHHHHHHHH
Confidence            86432100  00112222333332  237899999999999999999987654

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd01874 Cdc42 Cdc42 subfamily

Probab=99.46  E-value=2.4e-12  Score=86.31  Aligned_cols=110  Identities=11%  Similarity=0.031  Sum_probs=68.4

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHH--HHHHHHHH--hCCceEEEEeccC
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDH--ELISLMER--SQTKYQVVLTKTD  107 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~--~~~~~l~~--~~~~~ivv~nK~D  107 (162)
                      ++.+|||||..          .+..+...++   +.+|+++++.|...+.+-...  .++..+..  .++|+++|.||+|
T Consensus        50 ~l~i~Dt~G~~----------~~~~~~~~~~---~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~D  116 (175)
T cd01874          50 TLGLFDTAGQE----------DYDRLRPLSY---PQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQID  116 (175)
T ss_pred             EEEEEECCCcc----------chhhhhhhhc---ccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHh
Confidence            47899999982          1222233333   346999999998764322222  24444433  2689999999999


Q ss_pred             CCCcHHHHHHH----------HHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHh
Q 031293          108 TVFPIDVARRA----------MQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKI  156 (162)
Q Consensus       108 l~~~~~~~~~~----------~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~  156 (162)
                      +.+..+..+..          +..++.....+  ..+++++||++|.|++++++.+..+
T Consensus       117 l~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~--~~~~~e~SA~tg~~v~~~f~~~~~~  173 (175)
T cd01874         117 LRDDPSTIEKLAKNKQKPITPETGEKLARDLK--AVKYVECSALTQKGLKNVFDEAILA  173 (175)
T ss_pred             hhhChhhHHHhhhccCCCcCHHHHHHHHHHhC--CcEEEEecCCCCCCHHHHHHHHHHH
Confidence            86543221111          11111222222  2589999999999999999998764

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>cd04134 Rho3 Rho3 subfamily

Probab=99.45  E-value=2.2e-12  Score=87.52  Aligned_cols=112  Identities=15%  Similarity=0.076  Sum_probs=69.4

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH--HHHHHHHHHh--CCceEEEEeccC
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMERS--QTKYQVVLTKTD  107 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~--~~~~~~l~~~--~~~~ivv~nK~D  107 (162)
                      .+.++||||..          .+..+...+   ...+++++++.|....-+-..  ..++..+...  +.|+++|.||+|
T Consensus        49 ~l~i~Dt~G~~----------~~~~l~~~~---~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~D  115 (189)
T cd04134          49 ELSLWDTAGQE----------EFDRLRSLS---YADTDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCD  115 (189)
T ss_pred             EEEEEECCCCh----------hcccccccc---ccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChh
Confidence            58899999981          112222223   245689998888765422222  2244444432  689999999999


Q ss_pred             CCCcHHHHHHH----------HHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293          108 TVFPIDVARRA----------MQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR  158 (162)
Q Consensus       108 l~~~~~~~~~~----------~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~  158 (162)
                      +.+.....+..          +...+.....+  ..+++++||++|.|+++++.++.+.+-
T Consensus       116 l~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~~~~~e~SAk~~~~v~e~f~~l~~~~~  174 (189)
T cd04134         116 LREARNERDDLQRYGKHTISYEEGLAVAKRIN--ALRYLECSAKLNRGVNEAFTEAARVAL  174 (189)
T ss_pred             hccChhhHHHHhhccCCCCCHHHHHHHHHHcC--CCEEEEccCCcCCCHHHHHHHHHHHHh
Confidence            97544322111          11222222222  257899999999999999999987653

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04117 Rab15 Rab15 subfamily

Probab=99.45  E-value=3.6e-12  Score=84.28  Aligned_cols=107  Identities=15%  Similarity=0.172  Sum_probs=67.0

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHHHHHH---hCCceEEEEeccC
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTD  107 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~~l~~---~~~~~ivv~nK~D  107 (162)
                      ++.++||||.          +.+......+.   +.+|+++++.|....-+-.. ..++..+..   .++|+++|.||.|
T Consensus        50 ~l~i~D~~g~----------~~~~~~~~~~~---~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~D  116 (161)
T cd04117          50 RIQIWDTAGQ----------ERYQTITKQYY---RRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKAD  116 (161)
T ss_pred             EEEEEeCCCc----------HhHHhhHHHHh---cCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcc
Confidence            4789999997          22233344443   35699999999865321111 122333322   2578999999999


Q ss_pred             CCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHh
Q 031293          108 TVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKI  156 (162)
Q Consensus       108 l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~  156 (162)
                      +.....+..  +.........+   .+++++||++|.|+++++.+|.+.
T Consensus       117 l~~~~~v~~--~~~~~~~~~~~---~~~~e~Sa~~~~~v~~~f~~l~~~  160 (161)
T cd04117         117 EEQKRQVGD--EQGNKLAKEYG---MDFFETSACTNSNIKESFTRLTEL  160 (161)
T ss_pred             cccccCCCH--HHHHHHHHHcC---CEEEEEeCCCCCCHHHHHHHHHhh
Confidence            864332211  12222222222   478999999999999999999764

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>PRK13768 GTPase; Provisional

Probab=99.44  E-value=3.1e-12  Score=90.45  Aligned_cols=123  Identities=25%  Similarity=0.298  Sum_probs=79.6

Q ss_pred             CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHH-----HhCCceEEEEec
Q 031293           31 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLME-----RSQTKYQVVLTK  105 (162)
Q Consensus        31 ~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~-----~~~~~~ivv~nK  105 (162)
                      ..+.++||||.-....   .+..+..+.+.. .... .+++++|+|++......+.....++.     ..++|+++|+||
T Consensus        97 ~~~~~~d~~g~~~~~~---~~~~~~~~~~~l-~~~~-~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK  171 (253)
T PRK13768         97 ADYVLVDTPGQMELFA---FRESGRKLVERL-SGSS-KSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNK  171 (253)
T ss_pred             CCEEEEeCCcHHHHHh---hhHHHHHHHHHH-HhcC-CeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEh
Confidence            3699999999722211   122223333333 2222 69999999998766555544443332     458999999999


Q ss_pred             cCCCCcHHHHHHHHHHHH------------------------HHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhhh
Q 031293          106 TDTVFPIDVARRAMQIEE------------------------SLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARF  159 (162)
Q Consensus       106 ~Dl~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~~  159 (162)
                      +|+.+..+.+...+.+..                        .+...+. ..+++++|++++.|+++++++|.+.+..
T Consensus       172 ~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~-~~~vi~iSa~~~~gl~~L~~~I~~~l~~  248 (253)
T PRK13768        172 ADLLSEEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGL-PVRVIPVSAKTGEGFDELYAAIQEVFCG  248 (253)
T ss_pred             HhhcCchhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCC-CCcEEEEECCCCcCHHHHHHHHHHHcCC
Confidence            999977665444333331                        1122221 2489999999999999999999987653

>cd04111 Rab39 Rab39 subfamily

Probab=99.44  E-value=1.4e-12  Score=89.95  Aligned_cols=108  Identities=19%  Similarity=0.211  Sum_probs=68.2

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHHHHHH----hCCceEEEEecc
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKT  106 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~~l~~----~~~~~ivv~nK~  106 (162)
                      ++.++||||+          +.+......++   +.+|++++|.|...+-+-.. ..++..+..    ...|+++|.||+
T Consensus        53 ~l~i~Dt~G~----------~~~~~~~~~~~---~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~  119 (211)
T cd04111          53 KLQLWDTAGQ----------ERFRSITRSYY---RNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKC  119 (211)
T ss_pred             EEEEEeCCcc----------hhHHHHHHHHh---cCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEcc
Confidence            4789999998          23344444454   34599999999876421111 122332222    246689999999


Q ss_pred             CCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293          107 DTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  157 (162)
Q Consensus       107 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~  157 (162)
                      |+........  +...+.....+   .+++++||++|.|+++++++|.+.+
T Consensus       120 Dl~~~~~v~~--~~~~~~~~~~~---~~~~e~Sak~g~~v~e~f~~l~~~~  165 (211)
T cd04111         120 DLESQRQVTR--EEAEKLAKDLG---MKYIETSARTGDNVEEAFELLTQEI  165 (211)
T ss_pred             ccccccccCH--HHHHHHHHHhC---CEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            9875332211  11222233232   5899999999999999999998754

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]

Probab=99.44  E-value=5.6e-12  Score=90.27  Aligned_cols=118  Identities=19%  Similarity=0.235  Sum_probs=92.3

Q ss_pred             eeccCCCCcceEEE---EEEeCCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHH
Q 031293           12 VRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHEL   88 (162)
Q Consensus        12 ~~~~~~~g~t~~~~---~~~~~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~   88 (162)
                      +..+...|+|...-   +.+-.+.+.-+|+|||             .+++++++.+..+-|+.++|+.+.++..+++.++
T Consensus        95 APEEkaRGITIn~aHveYeTa~RhYaH~DCPGH-------------ADYIKNMItGaaqMDGaILVVaatDG~MPQTrEH  161 (449)
T KOG0460|consen   95 APEEKARGITINAAHVEYETAKRHYAHTDCPGH-------------ADYIKNMITGAAQMDGAILVVAATDGPMPQTREH  161 (449)
T ss_pred             ChhhhhccceEeeeeeeeeccccccccCCCCch-------------HHHHHHhhcCccccCceEEEEEcCCCCCcchHHH
Confidence            34556678876433   3344778999999999             9999999999999999999999999999999999


Q ss_pred             HHHHHHhCCc-eEEEEeccCCCCcHH-HHHHHHHHHHHHHhcCC--CCCCeEEeecCC
Q 031293           89 ISLMERSQTK-YQVVLTKTDTVFPID-VARRAMQIEESLKANNS--LVQPVMMVSSKS  142 (162)
Q Consensus        89 ~~~l~~~~~~-~ivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~--~~~~i~~~Sa~~  142 (162)
                      +-..+..+++ +++.+||.|++++.+ .+-....+++.+..++.  ...|++.=||+.
T Consensus       162 lLLArQVGV~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf~Gd~~PvI~GSAL~  219 (449)
T KOG0460|consen  162 LLLARQVGVKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGFDGDNTPVIRGSALC  219 (449)
T ss_pred             HHHHHHcCCceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCCCCCCCCeeecchhh
Confidence            9988888988 788999999995444 44444566777766542  246888877653

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=99.44  E-value=2e-12  Score=86.36  Aligned_cols=111  Identities=15%  Similarity=0.021  Sum_probs=68.4

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH--HHHHHHHHHh--CCceEEEEeccC
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMERS--QTKYQVVLTKTD  107 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~--~~~~~~l~~~--~~~~ivv~nK~D  107 (162)
                      .+.++||||...          +..+...+   .+.+|+++++.|.....+-..  ..++..+...  ++|+++|.||+|
T Consensus        47 ~~~i~Dt~G~~~----------~~~~~~~~---~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D  113 (174)
T smart00174       47 ELGLWDTAGQED----------YDRLRPLS---YPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTPIILVGTKLD  113 (174)
T ss_pred             EEEEEECCCCcc----------cchhchhh---cCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChh
Confidence            488999999821          12222222   345699999999875422211  1234444332  689999999999


Q ss_pred             CCCcHHHH-H---------HHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293          108 TVFPIDVA-R---------RAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  157 (162)
Q Consensus       108 l~~~~~~~-~---------~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~  157 (162)
                      +....... .         ..+...+.....+  ..+++++||++|.|++++++.+.+.+
T Consensus       114 l~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~~~~~e~Sa~~~~~v~~lf~~l~~~~  171 (174)
T smart00174      114 LREDKSTLRELSKQKQEPVTYEQGEALAKRIG--AVKYLECSALTQEGVREVFEEAIRAA  171 (174)
T ss_pred             hhhChhhhhhhhcccCCCccHHHHHHHHHHcC--CcEEEEecCCCCCCHHHHHHHHHHHh
Confidence            87432210 0         0111222333332  24789999999999999999988654

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>cd01856 YlqF YlqF

Probab=99.43  E-value=1.3e-12  Score=87.34  Aligned_cols=94  Identities=18%  Similarity=0.282  Sum_probs=67.2

Q ss_pred             HHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCC
Q 031293           55 EELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQP  134 (162)
Q Consensus        55 ~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (162)
                      .+.+.+.......+|++++|+|++.+....+..++..+  .++|.++|+||+|+.++.......    +.+....   .+
T Consensus         7 ~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~~i~~~~--~~k~~ilVlNK~Dl~~~~~~~~~~----~~~~~~~---~~   77 (171)
T cd01856           7 AKALRQIKEKLKLVDLVIEVRDARIPLSSRNPLLEKIL--GNKPRIIVLNKADLADPKKTKKWL----KYFESKG---EK   77 (171)
T ss_pred             HHHHHHHHHHHhhCCEEEEEeeccCccCcCChhhHhHh--cCCCEEEEEehhhcCChHHHHHHH----HHHHhcC---Ce
Confidence            45566666677788999999999887665555554544  267999999999997543322222    2222222   37


Q ss_pred             eEEeecCCCCCHHHHHHHHHHhh
Q 031293          135 VMMVSSKSGAGIRSLRTVLSKIA  157 (162)
Q Consensus       135 i~~~Sa~~~~g~~~l~~~i~~~~  157 (162)
                      ++++||+++.|++++.+.+.+.+
T Consensus        78 vi~iSa~~~~gi~~L~~~l~~~l  100 (171)
T cd01856          78 VLFVNAKSGKGVKKLLKAAKKLL  100 (171)
T ss_pred             EEEEECCCcccHHHHHHHHHHHH
Confidence            89999999999999999998754

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=99.43  E-value=5.3e-12  Score=84.17  Aligned_cols=108  Identities=19%  Similarity=0.202  Sum_probs=67.2

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHH-HHHHHHHhcCcccceeEEEeecCCCCCccHH-HHHHHHHH----hCCceEEEEec
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWE-ELVKEYVSTRVSLKRVCLLIDTKWGVKPRDH-ELISLMER----SQTKYQVVLTK  105 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~-~~~~~l~~----~~~~~ivv~nK  105 (162)
                      .+.++||||.          +.+. .+...++   +.+|++++++|+..+.+-... .++..+..    .++|+++|+||
T Consensus        52 ~~~i~Dt~G~----------~~~~~~~~~~~~---~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK  118 (170)
T cd04115          52 KVQLWDTAGQ----------ERFRKSMVQHYY---RNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNK  118 (170)
T ss_pred             EEEEEeCCCh----------HHHHHhhHHHhh---cCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEEC
Confidence            5889999998          1122 2233333   456999999999764322222 23333332    25899999999


Q ss_pred             cCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCC---CCCHHHHHHHHHHhh
Q 031293          106 TDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKS---GAGIRSLRTVLSKIA  157 (162)
Q Consensus       106 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~---~~g~~~l~~~i~~~~  157 (162)
                      +|+........  +...+......   .+++++||++   +.++++++..+.+.+
T Consensus       119 ~Dl~~~~~~~~--~~~~~~~~~~~---~~~~e~Sa~~~~~~~~i~~~f~~l~~~~  168 (170)
T cd04115         119 CDLREQIQVPT--DLAQRFADAHS---MPLFETSAKDPSENDHVEAIFMTLAHKL  168 (170)
T ss_pred             ccchhhcCCCH--HHHHHHHHHcC---CcEEEEeccCCcCCCCHHHHHHHHHHHh
Confidence            99864332211  11222222222   5899999999   888999888887654

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=99.43  E-value=5.6e-12  Score=90.30  Aligned_cols=145  Identities=17%  Similarity=0.179  Sum_probs=91.0

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEE--EEe--CCceEEEcCCCCcccc-cCHHHHHHHHHHHHHHHhcCcccceeEEEe
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINF--FKL--GTKLCLVDLPGYGFAY-AKEEVKDAWEELVKEYVSTRVSLKRVCLLI   75 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~--~~~--~~~~~ivDtpG~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~vi~vi   75 (162)
                      |||+++..  ..+++++|.||...+.  ...  +..|++-|.||+-+.. ....       +-.++++..+++.++++||
T Consensus       175 lls~vS~A--kPKIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~G-------LG~~FLrHIERt~vL~hvi  245 (369)
T COG0536         175 LLSAVSAA--KPKIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVG-------LGLRFLRHIERTRVLLHVI  245 (369)
T ss_pred             HHHHHhhc--CCcccCCccccccCcccEEEecCCCcEEEecCcccccccccCCC-------ccHHHHHHHHhhheeEEEE
Confidence            57778777  6899999999986654  232  4459999999985442 1211       2223344445558999999


Q ss_pred             ecCCCCC---ccH-HHHHHHHHHh-----CCceEEEEeccCCC-CcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCC
Q 031293           76 DTKWGVK---PRD-HELISLMERS-----QTKYQVVLTKTDTV-FPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAG  145 (162)
Q Consensus        76 d~~~~~~---~~~-~~~~~~l~~~-----~~~~ivv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g  145 (162)
                      |....-.   ..+ ..+...|..+     ++|.++|+||+|++ +++..+...+.+.+.   ..+  ...+++||.+++|
T Consensus       246 D~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~---~~~--~~~~~ISa~t~~g  320 (369)
T COG0536         246 DLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEA---LGW--EVFYLISALTREG  320 (369)
T ss_pred             ecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHh---cCC--CcceeeehhcccC
Confidence            9764221   111 2223344433     68999999999955 334444333333222   211  2333399999999


Q ss_pred             HHHHHHHHHHhhhh
Q 031293          146 IRSLRTVLSKIARF  159 (162)
Q Consensus       146 ~~~l~~~i~~~~~~  159 (162)
                      +++|...+.+.++.
T Consensus       321 ~~~L~~~~~~~l~~  334 (369)
T COG0536         321 LDELLRALAELLEE  334 (369)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999877653

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=99.43  E-value=2.8e-12  Score=98.92  Aligned_cols=68  Identities=22%  Similarity=0.338  Sum_probs=54.4

Q ss_pred             CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCC
Q 031293           30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV  109 (162)
Q Consensus        30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~  109 (162)
                      +.++.++||||+             ..+........+.+|++++|+|+..+.......++......++|+++++||+|+.
T Consensus        78 ~~~inliDTPG~-------------~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~iPiiv~iNK~D~~  144 (526)
T PRK00741         78 DCLINLLDTPGH-------------EDFSEDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLRDTPIFTFINKLDRD  144 (526)
T ss_pred             CEEEEEEECCCc-------------hhhHHHHHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHhcCCCEEEEEECCccc
Confidence            556999999999             4444444444566799999999998887777777777777899999999999986


Q ss_pred             C
Q 031293          110 F  110 (162)
Q Consensus       110 ~  110 (162)
                      .
T Consensus       145 ~  145 (526)
T PRK00741        145 G  145 (526)
T ss_pred             c
Confidence            4

>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]

Probab=99.43  E-value=1.5e-12  Score=101.07  Aligned_cols=114  Identities=23%  Similarity=0.336  Sum_probs=87.5

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCCC-
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF-  110 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~-  110 (162)
                      .+.++|||||             +.|..--.++.+.||++|+|+|...++.+++++.+..|+..+.||||++||+|.+- 
T Consensus       541 g~lvIdtpgh-------------EsFtnlRsrgsslC~~aIlvvdImhGlepqtiESi~lLR~rktpFivALNKiDRLYg  607 (1064)
T KOG1144|consen  541 GLLVIDTPGH-------------ESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESINLLRMRKTPFIVALNKIDRLYG  607 (1064)
T ss_pred             eeEEecCCCc-------------hhhhhhhhccccccceEEEEeehhccCCcchhHHHHHHHhcCCCeEEeehhhhhhcc
Confidence            4889999999             77777777888999999999999999999999999999999999999999999641 


Q ss_pred             -----cHHH---------------HHHHHHHHHHHHhc------------CCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293          111 -----PIDV---------------ARRAMQIEESLKAN------------NSLVQPVMMVSSKSGAGIRSLRTVLSKIAR  158 (162)
Q Consensus       111 -----~~~~---------------~~~~~~~~~~~~~~------------~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~  158 (162)
                           ...+               ...+..+...+...            -...+.++|+||.+|+|+.+|+.+|.++.+
T Consensus       608 wk~~p~~~i~~~lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQ  687 (1064)
T KOG1144|consen  608 WKSCPNAPIVEALKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQ  687 (1064)
T ss_pred             cccCCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHH
Confidence                 1111               11111111112111            112468999999999999999999988764

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=99.43  E-value=1.2e-12  Score=87.49  Aligned_cols=109  Identities=11%  Similarity=0.066  Sum_probs=67.2

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH--HHHHHHHHH--hCCceEEEEeccC
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMER--SQTKYQVVLTKTD  107 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~--~~~~~~l~~--~~~~~ivv~nK~D  107 (162)
                      ++.+|||||..          .+..+...   ..+.+|+++++.|..++.+-..  ..++..+..  .++|+++|.||+|
T Consensus        49 ~~~i~Dt~G~~----------~~~~~~~~---~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~D  115 (173)
T cd04130          49 RLQLCDTAGQD----------EFDKLRPL---CYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQAD  115 (173)
T ss_pred             EEEEEECCCCh----------hhcccccc---ccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChh
Confidence            47899999981          11222222   2346699999999876432222  234444443  3589999999999


Q ss_pred             CCCcHHHH----------HHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHH
Q 031293          108 TVFPIDVA----------RRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSK  155 (162)
Q Consensus       108 l~~~~~~~----------~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~  155 (162)
                      +.......          -..+.........+  ..+++++||++|.|++++++.+.-
T Consensus       116 l~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~--~~~~~e~Sa~~~~~v~~lf~~~~~  171 (173)
T cd04130         116 LRTDVNVLIQLARYGEKPVSQSRAKALAEKIG--ACEYIECSALTQKNLKEVFDTAIL  171 (173)
T ss_pred             hccChhHHHHHhhcCCCCcCHHHHHHHHHHhC--CCeEEEEeCCCCCCHHHHHHHHHh
Confidence            86432110          00112222333232  248999999999999999998763

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>cd01882 BMS1 Bms1

Probab=99.43  E-value=3.8e-12  Score=88.61  Aligned_cols=125  Identities=15%  Similarity=0.199  Sum_probs=79.3

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEeCCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCC
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG   80 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~   80 (162)
                      |+|+|.+......++...|+. .+ ....+.++.++||||+             -   ...+.....+|++++++|+..+
T Consensus        55 l~~~l~~~~~~~~~~~~~g~i-~i-~~~~~~~i~~vDtPg~-------------~---~~~l~~ak~aDvVllviDa~~~  116 (225)
T cd01882          55 LIKSLVKNYTKQNISDIKGPI-TV-VTGKKRRLTFIECPND-------------I---NAMIDIAKVADLVLLLIDASFG  116 (225)
T ss_pred             HHHHHHhhcccCccccccccE-EE-EecCCceEEEEeCCch-------------H---HHHHHHHHhcCEEEEEEecCcC
Confidence            355565542223334444431 11 1123567999999987             1   1222223456999999999988


Q ss_pred             CCccHHHHHHHHHHhCCce-EEEEeccCCCCcH-HHHHHHHHHHHHHHhcCCCCCCeEEeecCCC
Q 031293           81 VKPRDHELISLMERSQTKY-QVVLTKTDTVFPI-DVARRAMQIEESLKANNSLVQPVMMVSSKSG  143 (162)
Q Consensus        81 ~~~~~~~~~~~l~~~~~~~-ivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~  143 (162)
                      +...+..++..+...+.|. ++|+||+|++... ...+..+.+++.+........+++++||++.
T Consensus       117 ~~~~~~~i~~~l~~~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~  181 (225)
T cd01882         117 FEMETFEFLNILQVHGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVH  181 (225)
T ss_pred             CCHHHHHHHHHHHHcCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccC
Confidence            8888888888888778885 5599999998433 2444455565544322223469999999886

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>cd04148 RGK RGK subfamily

Probab=99.43  E-value=3.9e-12  Score=88.40  Aligned_cols=109  Identities=11%  Similarity=0.013  Sum_probs=68.3

Q ss_pred             CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCcc-HHHHHHHHHH----hCCceEEEEec
Q 031293           31 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPR-DHELISLMER----SQTKYQVVLTK  105 (162)
Q Consensus        31 ~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~-~~~~~~~l~~----~~~~~ivv~nK  105 (162)
                      ..+.++||||..             ..+....... .+|++++|+|+.++-+-. ..+++..+..    .++|+++|.||
T Consensus        50 ~~l~i~Dt~G~~-------------~~~~~~~~~~-~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK  115 (221)
T cd04148          50 STLVVIDHWEQE-------------MWTEDSCMQY-QGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNK  115 (221)
T ss_pred             EEEEEEeCCCcc-------------hHHHhHHhhc-CCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEC
Confidence            358899999992             1111211110 569999999987642211 1233444433    35899999999


Q ss_pred             cCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293          106 TDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR  158 (162)
Q Consensus       106 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~  158 (162)
                      +|+........  +..++.....+   .+++++||++|.|++++++++.+.+.
T Consensus       116 ~Dl~~~~~v~~--~~~~~~a~~~~---~~~~e~SA~~~~gv~~l~~~l~~~~~  163 (221)
T cd04148         116 SDLARSREVSV--QEGRACAVVFD---CKFIETSAGLQHNVDELLEGIVRQIR  163 (221)
T ss_pred             hhccccceecH--HHHHHHHHHcC---CeEEEecCCCCCCHHHHHHHHHHHHH
Confidence            99875432211  11222222222   47899999999999999999987663

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>COG2229 Predicted GTPase [General function prediction only]

Probab=99.42  E-value=8e-12  Score=82.12  Aligned_cols=108  Identities=21%  Similarity=0.292  Sum_probs=80.4

Q ss_pred             CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhC-CceEEEEeccCCC
Q 031293           31 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQ-TKYQVVLTKTDTV  109 (162)
Q Consensus        31 ~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~-~~~ivv~nK~Dl~  109 (162)
                      ..+.++|||||          +++.-++.-+.++   +.++++++|++.+.+.....++.++...+ +|++|++||.|+.
T Consensus        68 ~~v~LfgtPGq----------~RF~fm~~~l~~g---a~gaivlVDss~~~~~~a~~ii~f~~~~~~ip~vVa~NK~DL~  134 (187)
T COG2229          68 TGVHLFGTPGQ----------ERFKFMWEILSRG---AVGAIVLVDSSRPITFHAEEIIDFLTSRNPIPVVVAINKQDLF  134 (187)
T ss_pred             ceEEEecCCCc----------HHHHHHHHHHhCC---cceEEEEEecCCCcchHHHHHHHHHhhccCCCEEEEeeccccC
Confidence            57999999999          3444445555444   68999999999887776677888888777 9999999999998


Q ss_pred             CcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHh
Q 031293          110 FPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKI  156 (162)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~  156 (162)
                      +....++    +++.+.... ...+++..+|..++|..+.+..+...
T Consensus       135 ~a~ppe~----i~e~l~~~~-~~~~vi~~~a~e~~~~~~~L~~ll~~  176 (187)
T COG2229         135 DALPPEK----IREALKLEL-LSVPVIEIDATEGEGARDQLDVLLLK  176 (187)
T ss_pred             CCCCHHH----HHHHHHhcc-CCCceeeeecccchhHHHHHHHHHhh
Confidence            6544433    333333331 23699999999999999888877654

>cd04177 RSR1 RSR1 subgroup

Probab=99.42  E-value=1.8e-12  Score=86.27  Aligned_cols=109  Identities=14%  Similarity=0.096  Sum_probs=66.8

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHHHHH----HhCCceEEEEecc
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLME----RSQTKYQVVLTKT  106 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~~l~----~~~~~~ivv~nK~  106 (162)
                      ++.++||||+.          .+..+...++..   ++.+++++|...+.+-.. ..+...+.    ..+.|++++.||+
T Consensus        50 ~~~i~Dt~G~~----------~~~~~~~~~~~~---~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~  116 (168)
T cd04177          50 DLEILDTAGTE----------QFTAMRELYIKS---GQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKA  116 (168)
T ss_pred             EEEEEeCCCcc----------cchhhhHHHHhh---CCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEECh
Confidence            57899999982          223344444433   488888888765321111 11222222    2368999999999


Q ss_pred             CCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293          107 DTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  157 (162)
Q Consensus       107 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~  157 (162)
                      |+........  +...+.....+  ..+++++||++|.|+++++.++...+
T Consensus       117 D~~~~~~~~~--~~~~~~~~~~~--~~~~~~~SA~~~~~i~~~f~~i~~~~  163 (168)
T cd04177         117 DLEDDRQVSR--EDGVSLSQQWG--NVPFYETSARKRTNVDEVFIDLVRQI  163 (168)
T ss_pred             hccccCccCH--HHHHHHHHHcC--CceEEEeeCCCCCCHHHHHHHHHHHH
Confidence            9864332211  11222222222  25899999999999999999997643

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.42  E-value=3.6e-12  Score=85.44  Aligned_cols=108  Identities=16%  Similarity=0.106  Sum_probs=77.7

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCc-cHHHHHHHHHHh---CCceEEEEeccC
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKP-RDHELISLMERS---QTKYQVVLTKTD  107 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~-~~~~~~~~l~~~---~~~~ivv~nK~D  107 (162)
                      ++.+|||+|+          +++..+...|++++   .++++|.|-....+- ....++..+++.   ++|.++|.||+|
T Consensus        62 ~lQiWDtaGQ----------erf~ti~~sYyrgA---~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D  128 (207)
T KOG0078|consen   62 KLQIWDTAGQ----------ERFRTITTAYYRGA---MGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCD  128 (207)
T ss_pred             EEEEEEcccc----------hhHHHHHHHHHhhc---CeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeecccc
Confidence            5889999999          55677788887765   777777776443211 122355666554   588999999999


Q ss_pred             CCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293          108 TVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  157 (162)
Q Consensus       108 l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~  157 (162)
                      +-++..+..  +.-+++..+++.   +++++||++|.|+++.+..|.+.+
T Consensus       129 ~~~~R~V~~--e~ge~lA~e~G~---~F~EtSAk~~~NI~eaF~~La~~i  173 (207)
T KOG0078|consen  129 LEEKRQVSK--ERGEALAREYGI---KFFETSAKTNFNIEEAFLSLARDI  173 (207)
T ss_pred             ccccccccH--HHHHHHHHHhCC---eEEEccccCCCCHHHHHHHHHHHH
Confidence            976444332  345555666654   999999999999999999988755

>cd04143 Rhes_like Rhes_like subfamily

Probab=99.42  E-value=4.5e-12  Score=89.37  Aligned_cols=109  Identities=15%  Similarity=0.176  Sum_probs=67.8

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHHHHHH------------hCCc
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER------------SQTK   98 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~~l~~------------~~~~   98 (162)
                      .+.+|||||..          .+..+...++   ..+|++++|.|....-+-.. ..+++.+..            .++|
T Consensus        49 ~l~I~Dt~G~~----------~~~~~~~~~~---~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~p  115 (247)
T cd04143          49 QLDILDTSGNH----------PFPAMRRLSI---LTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIP  115 (247)
T ss_pred             EEEEEECCCCh----------hhhHHHHHHh---ccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCc
Confidence            47799999981          1222222222   34599999999875321111 122333321            2589


Q ss_pred             eEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293           99 YQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  157 (162)
Q Consensus        99 ~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~  157 (162)
                      +++|+||+|+......  ..+.+.+.+...  ...+++++||++|.|+++++++|.+..
T Consensus       116 iIivgNK~Dl~~~~~v--~~~ei~~~~~~~--~~~~~~evSAktg~gI~elf~~L~~~~  170 (247)
T cd04143         116 MVICGNKADRDFPREV--QRDEVEQLVGGD--ENCAYFEVSAKKNSNLDEMFRALFSLA  170 (247)
T ss_pred             EEEEEECccchhcccc--CHHHHHHHHHhc--CCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence            9999999999642221  112343433322  125799999999999999999998765

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>cd01850 CDC_Septin CDC/Septin

Probab=99.42  E-value=1.4e-11  Score=88.18  Aligned_cols=105  Identities=21%  Similarity=0.417  Sum_probs=71.3

Q ss_pred             ceEEEcCCCCcccccCHH----H----HHHHHHHHHHHHhc-------CcccceeEEEeecCC-CCCccHHHHHHHHHHh
Q 031293           32 KLCLVDLPGYGFAYAKEE----V----KDAWEELVKEYVST-------RVSLKRVCLLIDTKW-GVKPRDHELISLMERS   95 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~----~----~~~~~~~~~~~~~~-------~~~~~~vi~vid~~~-~~~~~~~~~~~~l~~~   95 (162)
                      +++++||||+|+......    .    .+.+..++.+..+-       -..+|++++++++.. ++...+.++++.+.. 
T Consensus        64 ~l~iiDTpGfgd~~~~~~~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l~~-  142 (276)
T cd01850          64 KLTVIDTPGFGDNINNSDCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRLSK-  142 (276)
T ss_pred             EEEEEecCCccccccchhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHHhc-
Confidence            599999999987632211    1    11222222222111       124788999998764 677778888888875 


Q ss_pred             CCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeec
Q 031293           96 QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSS  140 (162)
Q Consensus        96 ~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa  140 (162)
                      ++|+++|+||+|++.+.+.....+.+++.+..++.   +++.++.
T Consensus       143 ~v~vi~VinK~D~l~~~e~~~~k~~i~~~l~~~~i---~~~~~~~  184 (276)
T cd01850         143 RVNIIPVIAKADTLTPEELKEFKQRIMEDIEEHNI---KIYKFPE  184 (276)
T ss_pred             cCCEEEEEECCCcCCHHHHHHHHHHHHHHHHHcCC---ceECCCC
Confidence            79999999999998877777777778888877664   6665554

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>PRK12740 elongation factor G; Reviewed

Probab=99.42  E-value=2.7e-12  Score=102.11  Aligned_cols=81  Identities=20%  Similarity=0.256  Sum_probs=60.0

Q ss_pred             CCCcceEEEEEE--e-CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHH
Q 031293           17 KPGLTQTINFFK--L-GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLME   93 (162)
Q Consensus        17 ~~g~t~~~~~~~--~-~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~   93 (162)
                      .+|.|.......  + +.++.++||||+             ..+..........+|++++++|+..+....+..++..+.
T Consensus        43 ~rgiTi~~~~~~~~~~~~~i~liDtPG~-------------~~~~~~~~~~l~~aD~vllvvd~~~~~~~~~~~~~~~~~  109 (668)
T PRK12740         43 ERGISITSAATTCEWKGHKINLIDTPGH-------------VDFTGEVERALRVLDGAVVVVCAVGGVEPQTETVWRQAE  109 (668)
T ss_pred             hcCCCeeeceEEEEECCEEEEEEECCCc-------------HHHHHHHHHHHHHhCeEEEEEeCCCCcCHHHHHHHHHHH
Confidence            456665444322  2 567999999999             334444444455679999999999888777777777777


Q ss_pred             HhCCceEEEEeccCCCC
Q 031293           94 RSQTKYQVVLTKTDTVF  110 (162)
Q Consensus        94 ~~~~~~ivv~nK~Dl~~  110 (162)
                      ..++|+++|+||+|+..
T Consensus       110 ~~~~p~iiv~NK~D~~~  126 (668)
T PRK12740        110 KYGVPRIIFVNKMDRAG  126 (668)
T ss_pred             HcCCCEEEEEECCCCCC
Confidence            77899999999999873

>cd04167 Snu114p Snu114p subfamily

Probab=99.41  E-value=4.3e-12  Score=87.70  Aligned_cols=113  Identities=19%  Similarity=0.198  Sum_probs=72.9

Q ss_pred             CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCCC
Q 031293           31 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF  110 (162)
Q Consensus        31 ~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~  110 (162)
                      ..+.++||||+             ..+..........+|++++|+|+..+.......++..+...++|+++|+||+|++.
T Consensus        71 ~~i~iiDtpG~-------------~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~~  137 (213)
T cd04167          71 YLFNIIDTPGH-------------VNFMDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAILEGLPIVLVINKIDRLI  137 (213)
T ss_pred             EEEEEEECCCC-------------cchHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCc
Confidence            35899999999             33333344444566999999999887766555566666556799999999999861


Q ss_pred             ------cH----HHHHHHHHHHHHHHhcCC--------CCCCeEEeecCCCCCHH--------HHHHHHHHh
Q 031293          111 ------PI----DVARRAMQIEESLKANNS--------LVQPVMMVSSKSGAGIR--------SLRTVLSKI  156 (162)
Q Consensus       111 ------~~----~~~~~~~~~~~~~~~~~~--------~~~~i~~~Sa~~~~g~~--------~l~~~i~~~  156 (162)
                            ..    ...+.++.+...+.....        ....+++.|++.+.++.        +|++.|.+.
T Consensus       138 ~~~~l~~~~~~~~l~~~i~~~n~~~~~~~~~~~~~~~p~~~nv~~~s~~~~w~~~~~~~~~~~~~~~~~~~~  209 (213)
T cd04167         138 LELKLPPNDAYFKLRHIIDEVNNIIASFSTTLSFLFSPENGNVCFASSKFGFCFTLESFAKKYGLVDSIVSN  209 (213)
T ss_pred             ccccCCHHHHHHHHHHHHHHHHHHHHHhcCCCceEeccCCCeEEEEecCCCeEEecHHHHhhhhHHHHHHhh
Confidence                  11    123333444444433321        12248889999987765        555555543

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>cd01859 MJ1464 MJ1464

Probab=99.41  E-value=5.4e-12  Score=83.05  Aligned_cols=95  Identities=23%  Similarity=0.316  Sum_probs=67.5

Q ss_pred             HHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCC
Q 031293           54 WEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQ  133 (162)
Q Consensus        54 ~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  133 (162)
                      |+++++..+++   +|++++|+|++.+....+.++...+...++|+++|+||+|+.+......    +.......   ..
T Consensus         2 ~~~~~~~i~~~---aD~vl~V~D~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~~~~~~----~~~~~~~~---~~   71 (156)
T cd01859           2 WKRLVRRIIKE---SDVVLEVLDARDPELTRSRKLERYVLELGKKLLIVLNKADLVPKEVLEK----WKSIKESE---GI   71 (156)
T ss_pred             HHHHHHHHHhh---CCEEEEEeeCCCCcccCCHHHHHHHHhCCCcEEEEEEhHHhCCHHHHHH----HHHHHHhC---CC
Confidence            34555555443   4999999999887666666666666666899999999999975433222    11111212   24


Q ss_pred             CeEEeecCCCCCHHHHHHHHHHhhh
Q 031293          134 PVMMVSSKSGAGIRSLRTVLSKIAR  158 (162)
Q Consensus       134 ~i~~~Sa~~~~g~~~l~~~i~~~~~  158 (162)
                      +++++||+++.|+++|++.+.+.++
T Consensus        72 ~~~~iSa~~~~gi~~L~~~l~~~~~   96 (156)
T cd01859          72 PVVYVSAKERLGTKILRRTIKELAK   96 (156)
T ss_pred             cEEEEEccccccHHHHHHHHHHHHh
Confidence            7899999999999999999987654

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=99.41  E-value=2e-12  Score=86.85  Aligned_cols=109  Identities=13%  Similarity=0.123  Sum_probs=66.7

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHH-HHHH---hCCceEEEEecc
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELIS-LMER---SQTKYQVVLTKT  106 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~-~l~~---~~~~~ivv~nK~  106 (162)
                      .+.++||||+.          .+..+...+..   .+++++++.|.....+-.. ..++. .++.   .+.|+++|+||+
T Consensus        50 ~~~l~D~~g~~----------~~~~~~~~~~~---~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~  116 (180)
T cd04137          50 HLEIVDTAGQD----------EYSILPQKYSI---GIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKS  116 (180)
T ss_pred             EEEEEECCChH----------hhHHHHHHHHh---hCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEch
Confidence            47899999982          22223333332   3588899988875321111 11222 2222   357999999999


Q ss_pred             CCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293          107 DTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR  158 (162)
Q Consensus       107 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~  158 (162)
                      |+........  +.........+   .+++++||+++.|+++++.++.+.+.
T Consensus       117 Dl~~~~~~~~--~~~~~~~~~~~---~~~~~~Sa~~~~gv~~l~~~l~~~~~  163 (180)
T cd04137         117 DLHTQRQVST--EEGKELAESWG---AAFLESSARENENVEEAFELLIEEIE  163 (180)
T ss_pred             hhhhcCccCH--HHHHHHHHHcC---CeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            9864322211  12222223222   48999999999999999999987654

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>cd04135 Tc10 TC10 subfamily

Probab=99.41  E-value=7e-12  Score=83.73  Aligned_cols=111  Identities=14%  Similarity=0.018  Sum_probs=67.4

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH--HHHHHHHHH--hCCceEEEEeccC
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMER--SQTKYQVVLTKTD  107 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~--~~~~~~l~~--~~~~~ivv~nK~D  107 (162)
                      .+.++||||....          ......+   .+.+++++++.|...+-+-..  ..+...+..  .++|+++|+||+|
T Consensus        49 ~~~i~Dt~G~~~~----------~~~~~~~---~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~D  115 (174)
T cd04135          49 LLGLYDTAGQEDY----------DRLRPLS---YPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQID  115 (174)
T ss_pred             EEEEEeCCCcccc----------ccccccc---CCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchh
Confidence            3679999998321          1111122   345689999999875422111  223344433  3689999999999


Q ss_pred             CCCcHHHHHH----------HHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293          108 TVFPIDVARR----------AMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  157 (162)
Q Consensus       108 l~~~~~~~~~----------~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~  157 (162)
                      +.+.......          .+..+......+  ..+++++||++|.|++++++.+.+.+
T Consensus       116 l~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~~~~~e~Sa~~~~gi~~~f~~~~~~~  173 (174)
T cd04135         116 LRDDPKTLARLNDMKEKPVTVEQGQKLAKEIG--AHCYVECSALTQKGLKTVFDEAILAI  173 (174)
T ss_pred             hhcChhhHHHHhhccCCCCCHHHHHHHHHHcC--CCEEEEecCCcCCCHHHHHHHHHHHh
Confidence            8654322110          011222223232  24789999999999999999987653

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>cd00876 Ras Ras family

Probab=99.41  E-value=4.1e-12  Score=83.46  Aligned_cols=135  Identities=11%  Similarity=0.044  Sum_probs=79.8

Q ss_pred             ChhcccCCCCceeccCCCCcceEEE--EEEeC---CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEe
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTIN--FFKLG---TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLI   75 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~--~~~~~---~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vi   75 (162)
                      |+|+|++..   ..+..++++.+..  .+..+   .++.++|+||+.          .+......++.   .+|++++++
T Consensus        15 li~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~----------~~~~~~~~~~~---~~~~~i~v~   78 (160)
T cd00876          15 ITIQFVKGT---FVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQE----------EFSAMRDLYIR---QGDGFILVY   78 (160)
T ss_pred             HHHHHHhCC---CCcCcCCChhHeEEEEEEECCEEEEEEEEECCChH----------HHHHHHHHHHh---cCCEEEEEE
Confidence            467777662   2344444443222  23333   347899999982          22333444433   359999999


Q ss_pred             ecCCCCCccH-HHHHHHH-HH---hCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHH
Q 031293           76 DTKWGVKPRD-HELISLM-ER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLR  150 (162)
Q Consensus        76 d~~~~~~~~~-~~~~~~l-~~---~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~  150 (162)
                      |...+.+... ..+...+ ..   ...|+++|+||+|+.......  .+.........+   .+++++||+++.|+++++
T Consensus        79 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~--~~~~~~~~~~~~---~~~~~~S~~~~~~i~~l~  153 (160)
T cd00876          79 SITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVS--KEEGKALAKEWG---CPFIETSAKDNINIDEVF  153 (160)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceec--HHHHHHHHHHcC---CcEEEeccCCCCCHHHHH
Confidence            9865321111 1222222 22   258999999999997532221  123333333332   489999999999999999


Q ss_pred             HHHHHh
Q 031293          151 TVLSKI  156 (162)
Q Consensus       151 ~~i~~~  156 (162)
                      ++|.+.
T Consensus       154 ~~l~~~  159 (160)
T cd00876         154 KLLVRE  159 (160)
T ss_pred             HHHHhh
Confidence            999764

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=99.41  E-value=4.3e-12  Score=90.94  Aligned_cols=102  Identities=15%  Similarity=0.214  Sum_probs=75.1

Q ss_pred             EcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcHHHH
Q 031293           36 VDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVA  115 (162)
Q Consensus        36 vDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~  115 (162)
                      -+.|||            +.+.+++.......+|++++|+|++.+.+.....+.+.+.  +.|+++|+||+|+.++....
T Consensus         2 ~WfpgH------------m~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~~i~~~l~--~kp~IiVlNK~DL~~~~~~~   67 (276)
T TIGR03596         2 QWFPGH------------MAKARREIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIRG--NKPRLIVLNKADLADPAVTK   67 (276)
T ss_pred             ccChHH------------HHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCChhHHHHHC--CCCEEEEEEccccCCHHHHH
Confidence            368898            3455666666677789999999999888777766666553  68999999999997654333


Q ss_pred             HHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293          116 RRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR  158 (162)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~  158 (162)
                      .+.+.    +...+   .+++++||.++.|+++|.+.+.+.++
T Consensus        68 ~~~~~----~~~~~---~~vi~iSa~~~~gi~~L~~~i~~~~~  103 (276)
T TIGR03596        68 QWLKY----FEEKG---IKALAINAKKGKGVKKIIKAAKKLLK  103 (276)
T ss_pred             HHHHH----HHHcC---CeEEEEECCCcccHHHHHHHHHHHHH
Confidence            32222    22222   37899999999999999999887654

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>cd04176 Rap2 Rap2 subgroup

Probab=99.41  E-value=2.3e-12  Score=85.21  Aligned_cols=108  Identities=15%  Similarity=0.116  Sum_probs=67.2

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHHHHHH----hCCceEEEEecc
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKT  106 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~~l~~----~~~~~ivv~nK~  106 (162)
                      .+.++||||..          .+......+++   .+|+++++.|..+.-+-.. ..+...+..    .++|+++|+||+
T Consensus        50 ~l~i~Dt~G~~----------~~~~~~~~~~~---~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~  116 (163)
T cd04176          50 VLEILDTAGTE----------QFASMRDLYIK---NGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKV  116 (163)
T ss_pred             EEEEEECCCcc----------cccchHHHHHh---hCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECc
Confidence            47799999972          22334444443   3599999999876422111 223333332    368999999999


Q ss_pred             CCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293          107 DTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  157 (162)
Q Consensus       107 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~  157 (162)
                      |+..+.....  +.........+   .+++++||++|.|+++++.++.+.+
T Consensus       117 Dl~~~~~~~~--~~~~~~~~~~~---~~~~~~Sa~~~~~v~~l~~~l~~~l  162 (163)
T cd04176         117 DLESEREVSS--AEGRALAEEWG---CPFMETSAKSKTMVNELFAEIVRQM  162 (163)
T ss_pred             cchhcCccCH--HHHHHHHHHhC---CEEEEecCCCCCCHHHHHHHHHHhc
Confidence            9864322211  11122222222   4889999999999999999997654

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=99.40  E-value=8.2e-12  Score=89.17  Aligned_cols=69  Identities=20%  Similarity=0.351  Sum_probs=53.9

Q ss_pred             CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCC
Q 031293           30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV  109 (162)
Q Consensus        30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~  109 (162)
                      +.++.++||||+             ..+..........+|++++|+|+..+.......++..+...++|.++++||+|..
T Consensus        63 ~~~i~liDtPG~-------------~~f~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~~~p~iivvNK~D~~  129 (268)
T cd04170          63 GHKINLIDTPGY-------------ADFVGETRAALRAADAALVVVSAQSGVEVGTEKLWEFADEAGIPRIIFINKMDRE  129 (268)
T ss_pred             CEEEEEEECcCH-------------HHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCccC
Confidence            457999999999             3333444444556799999999998877766777777777899999999999987


Q ss_pred             Cc
Q 031293          110 FP  111 (162)
Q Consensus       110 ~~  111 (162)
                      ..
T Consensus       130 ~~  131 (268)
T cd04170         130 RA  131 (268)
T ss_pred             CC
Confidence            43

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=99.40  E-value=6.8e-12  Score=81.03  Aligned_cols=108  Identities=19%  Similarity=0.070  Sum_probs=68.8

Q ss_pred             CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHH-----HHHHHhCCceEEEEe
Q 031293           30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELI-----SLMERSQTKYQVVLT  104 (162)
Q Consensus        30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~-----~~l~~~~~~~ivv~n  104 (162)
                      +..+.++|+||+.             ............+|.+++|+|+..+........+     ......++|+++++|
T Consensus        44 ~~~~~l~D~~g~~-------------~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~n  110 (157)
T cd00882          44 KVKLQIWDTAGQE-------------RFRSLRRLYYRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGN  110 (157)
T ss_pred             EEEEEEEecCChH-------------HHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEe
Confidence            4458999999982             2222222233456999999999875433332211     222334789999999


Q ss_pred             ccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHH
Q 031293          105 KTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLS  154 (162)
Q Consensus       105 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~  154 (162)
                      |+|+.......... ... .....  ...+++.+|+..+.|+++++++|.
T Consensus       111 k~D~~~~~~~~~~~-~~~-~~~~~--~~~~~~~~s~~~~~~i~~~~~~l~  156 (157)
T cd00882         111 KIDLPEERVVSEEE-LAE-QLAKE--LGVPYFETSAKTGENVEELFEELA  156 (157)
T ss_pred             ccccccccchHHHH-HHH-HHHhh--cCCcEEEEecCCCCChHHHHHHHh
Confidence            99997554433211 011 11111  236999999999999999999875

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>cd01870 RhoA_like RhoA-like subfamily

Probab=99.40  E-value=9.8e-12  Score=83.08  Aligned_cols=111  Identities=14%  Similarity=0.072  Sum_probs=66.8

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCC--ccHHHHHHHHHH--hCCceEEEEeccC
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVK--PRDHELISLMER--SQTKYQVVLTKTD  107 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~--~~~~~~~~~l~~--~~~~~ivv~nK~D  107 (162)
                      ++.++||||..          .+..+...   ....+|+++++.|....-+  .....+...+..  .+.|+++|.||+|
T Consensus        50 ~l~i~Dt~G~~----------~~~~~~~~---~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D  116 (175)
T cd01870          50 ELALWDTAGQE----------DYDRLRPL---SYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD  116 (175)
T ss_pred             EEEEEeCCCch----------hhhhcccc---ccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChh
Confidence            47899999981          12222222   2355689998888764321  111123333333  3689999999999


Q ss_pred             CCCcHHHHHHH----------HHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293          108 TVFPIDVARRA----------MQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  157 (162)
Q Consensus       108 l~~~~~~~~~~----------~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~  157 (162)
                      +.+.....+..          ...++.....  ...+++++||++|.|+++++.++.+.+
T Consensus       117 l~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~--~~~~~~~~Sa~~~~~v~~lf~~l~~~~  174 (175)
T cd01870         117 LRNDEHTRRELAKMKQEPVKPEEGRDMANKI--GAFGYMECSAKTKEGVREVFEMATRAA  174 (175)
T ss_pred             cccChhhhhhhhhccCCCccHHHHHHHHHHc--CCcEEEEeccccCcCHHHHHHHHHHHh
Confidence            87543221111          1112222222  234899999999999999999998654

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>TIGR00503 prfC peptide chain release factor 3

Probab=99.39  E-value=9.2e-12  Score=96.11  Aligned_cols=67  Identities=22%  Similarity=0.346  Sum_probs=54.0

Q ss_pred             CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCC
Q 031293           30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV  109 (162)
Q Consensus        30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~  109 (162)
                      +.++.++||||+             ..+..........+|++++|+|+..++......+++.+...++|+++++||+|+.
T Consensus        79 ~~~inliDTPG~-------------~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~~PiivviNKiD~~  145 (527)
T TIGR00503        79 DCLVNLLDTPGH-------------EDFSEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRLRDTPIFTFMNKLDRD  145 (527)
T ss_pred             CeEEEEEECCCh-------------hhHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECcccc
Confidence            557999999999             4444444455566799999999998877777777777777789999999999985

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>cd01875 RhoG RhoG subfamily

Probab=99.39  E-value=4.1e-12  Score=86.36  Aligned_cols=111  Identities=13%  Similarity=0.049  Sum_probs=69.6

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHH--HHHHHHHH--hCCceEEEEeccC
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDH--ELISLMER--SQTKYQVVLTKTD  107 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~--~~~~~l~~--~~~~~ivv~nK~D  107 (162)
                      .+.+|||||.          +.+..+...++   +++|++++|.|....-+-...  .+...+..  .++|+++|.||.|
T Consensus        52 ~l~i~Dt~G~----------e~~~~l~~~~~---~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~D  118 (191)
T cd01875          52 SLNLWDTAGQ----------EEYDRLRTLSY---PQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKD  118 (191)
T ss_pred             EEEEEECCCc----------hhhhhhhhhhc---cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChh
Confidence            4889999999          33344444443   346999999998654322222  13333332  3689999999999


Q ss_pred             CCCcHHHHHH----------HHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293          108 TVFPIDVARR----------AMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  157 (162)
Q Consensus       108 l~~~~~~~~~----------~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~  157 (162)
                      +.+.....+.          .+..++.....+  ..+++++||++|.|+++++.++.+.+
T Consensus       119 L~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~--~~~~~e~SAk~g~~v~e~f~~l~~~~  176 (191)
T cd01875         119 LRNDADTLKKLKEQGQAPITPQQGGALAKQIH--AVKYLECSALNQDGVKEVFAEAVRAV  176 (191)
T ss_pred             hhcChhhHHHHhhccCCCCCHHHHHHHHHHcC--CcEEEEeCCCCCCCHHHHHHHHHHHH
Confidence            9643221100          011222222222  24899999999999999999998755

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>PRK13351 elongation factor G; Reviewed

Probab=99.38  E-value=5.2e-12  Score=100.77  Aligned_cols=68  Identities=21%  Similarity=0.307  Sum_probs=54.3

Q ss_pred             CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCC
Q 031293           30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV  109 (162)
Q Consensus        30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~  109 (162)
                      +.++.++||||+             ..+........+.+|++++|+|+..+.......++..+...++|+++++||+|+.
T Consensus        72 ~~~i~liDtPG~-------------~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~  138 (687)
T PRK13351         72 NHRINLIDTPGH-------------IDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRYGIPRLIFINKMDRV  138 (687)
T ss_pred             CEEEEEEECCCc-------------HHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEECCCCC
Confidence            557999999999             3344444444556699999999998887777777777877899999999999987


Q ss_pred             C
Q 031293          110 F  110 (162)
Q Consensus       110 ~  110 (162)
                      .
T Consensus       139 ~  139 (687)
T PRK13351        139 G  139 (687)
T ss_pred             C
Confidence            4

>cd04133 Rop_like Rop subfamily

Probab=99.38  E-value=7.9e-12  Score=83.87  Aligned_cols=111  Identities=16%  Similarity=0.070  Sum_probs=70.5

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHH--HHHHHHHH--hCCceEEEEeccC
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDH--ELISLMER--SQTKYQVVLTKTD  107 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~--~~~~~l~~--~~~~~ivv~nK~D  107 (162)
                      ++.++||+|..          .+..+...++   +++++++++.|.....+-...  .++..+..  .+.|+++|.||+|
T Consensus        50 ~l~i~Dt~G~~----------~~~~~~~~~~---~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~D  116 (176)
T cd04133          50 NLGLWDTAGQE----------DYNRLRPLSY---RGADVFVLAFSLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLD  116 (176)
T ss_pred             EEEEEECCCCc----------cccccchhhc---CCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChh
Confidence            58899999982          2233333443   356999999998764332222  34444442  3689999999999


Q ss_pred             CCCcHHH--------HHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293          108 TVFPIDV--------ARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  157 (162)
Q Consensus       108 l~~~~~~--------~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~  157 (162)
                      +.++...        .-..+..++.....+.  .+++++||++|.|+++++..+.+.+
T Consensus       117 l~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~--~~~~E~SAk~~~nV~~~F~~~~~~~  172 (176)
T cd04133         117 LRDDKQYLADHPGASPITTAQGEELRKQIGA--AAYIECSSKTQQNVKAVFDAAIKVV  172 (176)
T ss_pred             hccChhhhhhccCCCCCCHHHHHHHHHHcCC--CEEEECCCCcccCHHHHHHHHHHHH
Confidence            9643210        0001222333333322  3689999999999999999998754

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.38  E-value=1.7e-12  Score=85.71  Aligned_cols=109  Identities=13%  Similarity=0.176  Sum_probs=74.0

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCC-ccHHHHHHHHHHhCCc---eEEEEeccC
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVK-PRDHELISLMERSQTK---YQVVLTKTD  107 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~-~~~~~~~~~l~~~~~~---~ivv~nK~D  107 (162)
                      ++.||||+|+          |+++.+...|+++.   +.+++|.|....-+ .....+.+.|.+..-|   +.+|.||+|
T Consensus        55 kfeIWDTAGQ----------ERy~slapMYyRgA---~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~D  121 (200)
T KOG0092|consen   55 KFEIWDTAGQ----------ERYHSLAPMYYRGA---NAAIVVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKAD  121 (200)
T ss_pred             EEEEEEcCCc----------ccccccccceecCC---cEEEEEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhh
Confidence            5889999999          55566666776554   78888888764211 1123344555543223   677999999


Q ss_pred             CCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293          108 TVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR  158 (162)
Q Consensus       108 l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~  158 (162)
                      +.....++.  ++........+   ..++.+||++|.|+++++..|.+.+.
T Consensus       122 L~~~R~V~~--~ea~~yAe~~g---ll~~ETSAKTg~Nv~~if~~Ia~~lp  167 (200)
T KOG0092|consen  122 LLERREVEF--EEAQAYAESQG---LLFFETSAKTGENVNEIFQAIAEKLP  167 (200)
T ss_pred             hhhcccccH--HHHHHHHHhcC---CEEEEEecccccCHHHHHHHHHHhcc
Confidence            986443322  33444444444   49999999999999999999988764

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.38  E-value=2.4e-12  Score=86.33  Aligned_cols=111  Identities=22%  Similarity=0.226  Sum_probs=71.5

Q ss_pred             CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCC--CccHHHHHHHHHH---hCCceEEEEe
Q 031293           30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV--KPRDHELISLMER---SQTKYQVVLT  104 (162)
Q Consensus        30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~--~~~~~~~~~~l~~---~~~~~ivv~n  104 (162)
                      +..+.++|.+|....          ..+.+.|+.   .+++++||+|+.+.-  .....++...+..   .++|+++++|
T Consensus        57 ~~~~~~~d~gG~~~~----------~~~w~~y~~---~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~N  123 (175)
T PF00025_consen   57 GYSLTIWDLGGQESF----------RPLWKSYFQ---NADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILAN  123 (175)
T ss_dssp             TEEEEEEEESSSGGG----------GGGGGGGHT---TESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEE
T ss_pred             cEEEEEEeccccccc----------cccceeecc---ccceeEEEEecccceeecccccchhhhcchhhcccceEEEEec
Confidence            446999999998221          233444443   459999999998632  1111222233331   2589999999


Q ss_pred             ccCCCCcHHHHHHHHHHHHHHH--hc-CCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293          105 KTDTVFPIDVARRAMQIEESLK--AN-NSLVQPVMMVSSKSGAGIRSLRTVLSKIA  157 (162)
Q Consensus       105 K~Dl~~~~~~~~~~~~~~~~~~--~~-~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~  157 (162)
                      |.|+.+.....+    +.+.+.  .. ..+.+.++.+||.+|+|+.+.++||.+.+
T Consensus       124 K~D~~~~~~~~~----i~~~l~l~~l~~~~~~~v~~~sa~~g~Gv~e~l~WL~~~~  175 (175)
T PF00025_consen  124 KQDLPDAMSEEE----IKEYLGLEKLKNKRPWSVFSCSAKTGEGVDEGLEWLIEQI  175 (175)
T ss_dssp             STTSTTSSTHHH----HHHHTTGGGTTSSSCEEEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred             cccccCcchhhH----HHhhhhhhhcccCCceEEEeeeccCCcCHHHHHHHHHhcC
Confidence            999875433332    222222  12 23456899999999999999999998753

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>TIGR00484 EF-G translation elongation factor EF-G

Probab=99.37  E-value=4.4e-12  Score=101.12  Aligned_cols=111  Identities=21%  Similarity=0.267  Sum_probs=77.4

Q ss_pred             CCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHH
Q 031293           17 KPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLME   93 (162)
Q Consensus        17 ~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~   93 (162)
                      .+|+|.+.....+   +.++.++||||+.             .+........+.+|++++|+|+.++....+..++..+.
T Consensus        58 ~rgiti~~~~~~~~~~~~~i~liDTPG~~-------------~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~  124 (689)
T TIGR00484        58 ERGITITSAATTVFWKGHRINIIDTPGHV-------------DFTVEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQAN  124 (689)
T ss_pred             hcCCCEecceEEEEECCeEEEEEECCCCc-------------chhHHHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHH
Confidence            4677776554332   6679999999992             23333334445569999999999988888888888888


Q ss_pred             HhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCC
Q 031293           94 RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSG  143 (162)
Q Consensus        94 ~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~  143 (162)
                      ..++|+++++||+|+.... .....+.+++.++...  ...++++|+..+
T Consensus       125 ~~~~p~ivviNK~D~~~~~-~~~~~~~i~~~l~~~~--~~~~ipis~~~~  171 (689)
T TIGR00484       125 RYEVPRIAFVNKMDKTGAN-FLRVVNQIKQRLGANA--VPIQLPIGAEDN  171 (689)
T ss_pred             HcCCCEEEEEECCCCCCCC-HHHHHHHHHHHhCCCc--eeEEeccccCCC
Confidence            8899999999999998533 4445556665554321  124666776655

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.37  E-value=8.9e-12  Score=82.67  Aligned_cols=110  Identities=15%  Similarity=0.136  Sum_probs=76.4

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCC--CCCccHHHHHHHHHHh---CCceEEEEecc
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW--GVKPRDHELISLMERS---QTKYQVVLTKT  106 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~--~~~~~~~~~~~~l~~~---~~~~ivv~nK~  106 (162)
                      ++.+|||+|+          +++..++..|.++   ++++++|.|-..  .+.... .+++.++..   ++|.++|.||+
T Consensus        59 KlQIWDTAGQ----------ERFrtit~syYR~---ahGii~vyDiT~~~SF~~v~-~Wi~Ei~~~~~~~v~~lLVGNK~  124 (205)
T KOG0084|consen   59 KLQIWDTAGQ----------ERFRTITSSYYRG---AHGIIFVYDITKQESFNNVK-RWIQEIDRYASENVPKLLVGNKC  124 (205)
T ss_pred             EEEeeecccc----------HHHhhhhHhhccC---CCeEEEEEEcccHHHhhhHH-HHHHHhhhhccCCCCeEEEeecc
Confidence            5999999999          5566667777655   488999988754  233322 244444443   57999999999


Q ss_pred             CCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhhh
Q 031293          107 DTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARF  159 (162)
Q Consensus       107 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~~  159 (162)
                      |+.+...+..  +..+++...++.  ..++++||+++.++++.+..|...+..
T Consensus       125 Dl~~~~~v~~--~~a~~fa~~~~~--~~f~ETSAK~~~NVe~~F~~la~~lk~  173 (205)
T KOG0084|consen  125 DLTEKRVVST--EEAQEFADELGI--PIFLETSAKDSTNVEDAFLTLAKELKQ  173 (205)
T ss_pred             ccHhheecCH--HHHHHHHHhcCC--cceeecccCCccCHHHHHHHHHHHHHH
Confidence            9975544332  233444555543  239999999999999999999876543

>cd01871 Rac1_like Rac1-like subfamily

Probab=99.37  E-value=5.5e-12  Score=84.50  Aligned_cols=110  Identities=14%  Similarity=0.029  Sum_probs=67.8

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHH--HHHHHHHHh--CCceEEEEeccC
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDH--ELISLMERS--QTKYQVVLTKTD  107 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~--~~~~~l~~~--~~~~ivv~nK~D  107 (162)
                      ++.++||||.          +.+..+...++   +++|++++|.|...+-+-...  .++..+...  +.|+++|.||+|
T Consensus        50 ~l~i~Dt~G~----------~~~~~~~~~~~---~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~D  116 (174)
T cd01871          50 NLGLWDTAGQ----------EDYDRLRPLSY---PQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLD  116 (174)
T ss_pred             EEEEEECCCc----------hhhhhhhhhhc---CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChh
Confidence            4889999998          22233333333   456999999998764322222  233333322  589999999999


Q ss_pred             CCCcHH-HHHH---------HHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHh
Q 031293          108 TVFPID-VARR---------AMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKI  156 (162)
Q Consensus       108 l~~~~~-~~~~---------~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~  156 (162)
                      +.+... .+..         .+..++.....+  ..+++++||++|.|++++++.+.+.
T Consensus       117 l~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~~~~~e~Sa~~~~~i~~~f~~l~~~  173 (174)
T cd01871         117 LRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG--AVKYLECSALTQKGLKTVFDEAIRA  173 (174)
T ss_pred             hccChhhHHHHhhccCCCCCHHHHHHHHHHcC--CcEEEEecccccCCHHHHHHHHHHh
Confidence            964321 1100         112222233232  2488999999999999999988753

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>cd01892 Miro2 Miro2 subfamily

Probab=99.37  E-value=1.3e-11  Score=82.35  Aligned_cols=108  Identities=19%  Similarity=0.071  Sum_probs=65.2

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHHHHH-HhCCceEEEEeccCCC
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLME-RSQTKYQVVLTKTDTV  109 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~~l~-~~~~~~ivv~nK~Dl~  109 (162)
                      .+.++|++|....          ..+...++   ..+|++++|+|+.++.+-.. .+++..+. ..++|+++|+||+|+.
T Consensus        55 ~l~~~d~~g~~~~----------~~~~~~~~---~~~d~~llv~d~~~~~s~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~  121 (169)
T cd01892          55 YLILREVGEDEVA----------ILLNDAEL---AACDVACLVYDSSDPKSFSYCAEVYKKYFMLGEIPCLFVAAKADLD  121 (169)
T ss_pred             EEEEEecCCcccc----------cccchhhh---hcCCEEEEEEeCCCHHHHHHHHHHHHHhccCCCCeEEEEEEccccc
Confidence            4778999987322          22222332   34699999999876421111 12222221 1268999999999986


Q ss_pred             CcHHH-HHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293          110 FPIDV-ARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  157 (162)
Q Consensus       110 ~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~  157 (162)
                      +.... ....+.+   ....+.  .+++++||++|.|++++++.+.+.+
T Consensus       122 ~~~~~~~~~~~~~---~~~~~~--~~~~~~Sa~~~~~v~~lf~~l~~~~  165 (169)
T cd01892         122 EQQQRYEVQPDEF---CRKLGL--PPPLHFSSKLGDSSNELFTKLATAA  165 (169)
T ss_pred             ccccccccCHHHH---HHHcCC--CCCEEEEeccCccHHHHHHHHHHHh
Confidence            43221 1111222   222222  2568999999999999999998765

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>COG5258 GTPBP1 GTPase [General function prediction only]

Probab=99.37  E-value=1.8e-11  Score=89.08  Aligned_cols=110  Identities=22%  Similarity=0.221  Sum_probs=92.0

Q ss_pred             eEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCc--ccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCCC
Q 031293           33 LCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRV--SLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF  110 (162)
Q Consensus        33 ~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~  110 (162)
                      +.++||.||             +.+++..++++-  ..|..++++.|.++++....+++-.+...+.|+++|+||+|+.+
T Consensus       203 VsfVDtvGH-------------EpwLrTtirGL~gqk~dYglLvVaAddG~~~~tkEHLgi~~a~~lPviVvvTK~D~~~  269 (527)
T COG5258         203 VSFVDTVGH-------------EPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEHLGIALAMELPVIVVVTKIDMVP  269 (527)
T ss_pred             EEEEecCCc-------------cHHHHHHHHHHhccccceEEEEEEccCCcchhhhHhhhhhhhhcCCEEEEEEecccCc
Confidence            789999999             777888888763  47999999999999999999999999899999999999999998


Q ss_pred             cHHHHHHHHHHHHHHHhc----------------------CCCCCCeEEeecCCCCCHHHHHHHHHH
Q 031293          111 PIDVARRAMQIEESLKAN----------------------NSLVQPVMMVSSKSGAGIRSLRTVLSK  155 (162)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~----------------------~~~~~~i~~~Sa~~~~g~~~l~~~i~~  155 (162)
                      .+..+...+.+.+.++..                      +....|++.+|+.+|+|++-|.+.+..
T Consensus       270 ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f~~  336 (527)
T COG5258         270 DDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFFLL  336 (527)
T ss_pred             HHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHHHh
Confidence            888877777777666531                      223579999999999999877666543

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=99.37  E-value=3.1e-12  Score=90.99  Aligned_cols=142  Identities=18%  Similarity=0.207  Sum_probs=93.0

Q ss_pred             ChhcccCCCCceeccCCCCcceEEE--EEEe-CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTIN--FFKL-GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT   77 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~--~~~~-~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~   77 (162)
                      |+|+||+.  .+.++.+|.||....  .... +-++.++|+||+-....+..      .--++.+...++||.+++|+|.
T Consensus        79 LL~~LTnt--~seva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~------grG~~vlsv~R~ADlIiiVld~  150 (365)
T COG1163          79 LLNKLTNT--KSEVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGR------GRGRQVLSVARNADLIIIVLDV  150 (365)
T ss_pred             HHHHHhCC--CccccccCceecccccceEeecCceEEEEcCcccccCcccCC------CCcceeeeeeccCCEEEEEEec
Confidence            68999999  688999999998655  3333 56799999999743311110      0013345555677888888887


Q ss_pred             CCCC------------------------------------------CccHHHH-HHHHHHh-------------------
Q 031293           78 KWGV------------------------------------------KPRDHEL-ISLMERS-------------------   95 (162)
Q Consensus        78 ~~~~------------------------------------------~~~~~~~-~~~l~~~-------------------   95 (162)
                      .++.                                          +..+... -..|++.                   
T Consensus       151 ~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~Ir~dvTlDd~i  230 (365)
T COG1163         151 FEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLIREDVTLDDLI  230 (365)
T ss_pred             CCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEEEecCCcHHHHH
Confidence            5322                                          1112221 1222221                   


Q ss_pred             --------CCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhhhhcC
Q 031293           96 --------QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARFAKV  162 (162)
Q Consensus        96 --------~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~~~k~  162 (162)
                              -+|.++|+||+|+++.++...    +.+        ..+.+++||..+.|+++|.+.|-+.+.+.+|
T Consensus       231 d~l~~nrvY~p~l~v~NKiD~~~~e~~~~----l~~--------~~~~v~isa~~~~nld~L~e~i~~~L~liRV  293 (365)
T COG1163         231 DALEGNRVYKPALYVVNKIDLPGLEELER----LAR--------KPNSVPISAKKGINLDELKERIWDVLGLIRV  293 (365)
T ss_pred             HHHhhcceeeeeEEEEecccccCHHHHHH----HHh--------ccceEEEecccCCCHHHHHHHHHHhhCeEEE
Confidence                    258999999999997544332    211        1388999999999999999999988876543

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=99.36  E-value=9.3e-12  Score=92.40  Aligned_cols=115  Identities=20%  Similarity=0.213  Sum_probs=78.9

Q ss_pred             CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCC
Q 031293           30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV  109 (162)
Q Consensus        30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~  109 (162)
                      +.++.++|||||-+...      ..+..+..       .|.+++++||.++..+++.-.++..-+.+.+.|+|+||+|..
T Consensus        67 ~~~INIvDTPGHADFGG------EVERvl~M-------VDgvlLlVDA~EGpMPQTrFVlkKAl~~gL~PIVVvNKiDrp  133 (603)
T COG1217          67 GTRINIVDTPGHADFGG------EVERVLSM-------VDGVLLLVDASEGPMPQTRFVLKKALALGLKPIVVINKIDRP  133 (603)
T ss_pred             CeEEEEecCCCcCCccc------hhhhhhhh-------cceEEEEEEcccCCCCchhhhHHHHHHcCCCcEEEEeCCCCC
Confidence            56799999999932211      11222322       499999999999999999888877777799999999999987


Q ss_pred             CcHHHHHHHHHHHHHHHhc----CCCCCCeEEeecCCC----------CCHHHHHHHHHHhhh
Q 031293          110 FPIDVARRAMQIEESLKAN----NSLVQPVMMVSSKSG----------AGIRSLRTVLSKIAR  158 (162)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~----~~~~~~i~~~Sa~~~----------~g~~~l~~~i~~~~~  158 (162)
                      +... .+.....-.++...    ..-.+|+++.|+..|          ..+..|++.|.+.++
T Consensus       134 ~Arp-~~Vvd~vfDLf~~L~A~deQLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp  195 (603)
T COG1217         134 DARP-DEVVDEVFDLFVELGATDEQLDFPIVYASARNGTASLDPEDEADDMAPLFETILDHVP  195 (603)
T ss_pred             CCCH-HHHHHHHHHHHHHhCCChhhCCCcEEEeeccCceeccCccccccchhHHHHHHHHhCC
Confidence            5332 22222222222221    123479999999886          457888888887764

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=99.35  E-value=9.8e-12  Score=89.52  Aligned_cols=103  Identities=14%  Similarity=0.229  Sum_probs=75.5

Q ss_pred             EEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcHHH
Q 031293           35 LVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDV  114 (162)
Q Consensus        35 ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~  114 (162)
                      +-+.|||            +.+.+++.......+|++++|+|++.+....+..+.+.+.  +.|+++|+||+|+.+....
T Consensus         4 ~~wfpgH------------m~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~~~l~~~~~--~kp~iiVlNK~DL~~~~~~   69 (287)
T PRK09563          4 IQWFPGH------------MAKARREIKENLKLVDVVIEVLDARIPLSSENPMIDKIIG--NKPRLLILNKSDLADPEVT   69 (287)
T ss_pred             CcCcHHH------------HHHHHHHHHHHhhhCCEEEEEEECCCCCCCCChhHHHHhC--CCCEEEEEEchhcCCHHHH
Confidence            5578998            3455666666677789999999999888776666655553  7899999999999754333


Q ss_pred             HHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293          115 ARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR  158 (162)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~  158 (162)
                      ..+    .+.+...+   .+++++||.++.|++++.+.+.+.++
T Consensus        70 ~~~----~~~~~~~~---~~vi~vSa~~~~gi~~L~~~l~~~l~  106 (287)
T PRK09563         70 KKW----IEYFEEQG---IKALAINAKKGQGVKKILKAAKKLLK  106 (287)
T ss_pred             HHH----HHHHHHcC---CeEEEEECCCcccHHHHHHHHHHHHH
Confidence            222    22222222   47899999999999999999887654

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=99.35  E-value=2.7e-11  Score=84.56  Aligned_cols=111  Identities=15%  Similarity=0.055  Sum_probs=70.1

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH--HHHHHHHHHh--CCceEEEEeccC
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMERS--QTKYQVVLTKTD  107 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~--~~~~~~l~~~--~~~~ivv~nK~D  107 (162)
                      .+.+|||||.          +.+..+...++   ++++++++|.|.....+-..  ..++..+...  +.|+++|.||+|
T Consensus        62 ~l~iwDTaG~----------e~~~~~~~~~~---~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~D  128 (232)
T cd04174          62 ELSLWDTSGS----------PYYDNVRPLCY---SDSDAVLLCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTD  128 (232)
T ss_pred             EEEEEeCCCc----------hhhHHHHHHHc---CCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcc
Confidence            4889999998          33344444443   45699999999876433222  2344444432  578999999999


Q ss_pred             CCCcHH----------HHHHHHHHHHHHHhcCCCCCCeEEeecCCCC-CHHHHHHHHHHhh
Q 031293          108 TVFPID----------VARRAMQIEESLKANNSLVQPVMMVSSKSGA-GIRSLRTVLSKIA  157 (162)
Q Consensus       108 l~~~~~----------~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~-g~~~l~~~i~~~~  157 (162)
                      +.....          ..-..+..++.....+.  .+++++||++|. |++++|..+...+
T Consensus       129 L~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~--~~~~EtSAktg~~~V~e~F~~~~~~~  187 (232)
T cd04174         129 LRTDLSTLMELSNQKQAPISYEQGCALAKQLGA--EVYLECSAFTSEKSIHSIFRSASLLC  187 (232)
T ss_pred             cccccchhhhhccccCCcCCHHHHHHHHHHcCC--CEEEEccCCcCCcCHHHHHHHHHHHH
Confidence            853100          00011233444444432  258999999998 8999999987643

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=99.35  E-value=3.3e-11  Score=82.67  Aligned_cols=113  Identities=19%  Similarity=0.190  Sum_probs=64.6

Q ss_pred             CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCccc-ceeEEEeecCCCCCc---cHHHHHHHHHH-----hCCceE
Q 031293           30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSL-KRVCLLIDTKWGVKP---RDHELISLMER-----SQTKYQ  100 (162)
Q Consensus        30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~vi~vid~~~~~~~---~~~~~~~~l~~-----~~~~~i  100 (162)
                      +..+.+|||||+.          .+......++   +.+ +++++|+|+......   ....+...+..     .++|++
T Consensus        47 ~~~~~l~D~pG~~----------~~~~~~~~~~---~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvl  113 (203)
T cd04105          47 GKKFRLVDVPGHP----------KLRDKLLETL---KNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVL  113 (203)
T ss_pred             CceEEEEECCCCH----------HHHHHHHHHH---hccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEE
Confidence            3469999999992          1222233333   344 999999999764211   11112222221     368999


Q ss_pred             EEEeccCCCCcHHHHHHHHHHHHHHHhc---------------------------------CCCCCCeEEeecCCCC-CH
Q 031293          101 VVLTKTDTVFPIDVARRAMQIEESLKAN---------------------------------NSLVQPVMMVSSKSGA-GI  146 (162)
Q Consensus       101 vv~nK~Dl~~~~~~~~~~~~~~~~~~~~---------------------------------~~~~~~i~~~Sa~~~~-g~  146 (162)
                      +++||+|+..........+.+++.+...                                 ....+.++.+|+..+. |+
T Consensus       114 iv~NK~Dl~~a~~~~~i~~~le~ei~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~f~f~~~~~~v~~~~~s~~~~~~~~  193 (203)
T cd04105         114 IACNKQDLFTAKPAKKIKEQLEKELNTLRESRSKSLSSLDGDEGSKESLGDKGGKSFEFDQLEGKVEFLEGSVKVDGGGI  193 (203)
T ss_pred             EEecchhhcccCCHHHHHHHHHHHHHHHHHHHhccccccccccccccccccccCcceeeccCceeEEEEEeEEecCCCCh
Confidence            9999999874333323333333222110                                 0012456777777765 69


Q ss_pred             HHHHHHHHH
Q 031293          147 RSLRTVLSK  155 (162)
Q Consensus       147 ~~l~~~i~~  155 (162)
                      +++.+||.+
T Consensus       194 ~~~~~w~~~  202 (203)
T cd04105         194 DGWEEWIDE  202 (203)
T ss_pred             HhHHHHHhh
Confidence            999998875

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]

Probab=99.34  E-value=2.3e-11  Score=84.93  Aligned_cols=120  Identities=19%  Similarity=0.176  Sum_probs=83.0

Q ss_pred             ceEEEcCCCCccc--ccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCC-----CCccHHHHHHHHHHhCCceEEEEe
Q 031293           32 KLCLVDLPGYGFA--YAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG-----VKPRDHELISLMERSQTKYQVVLT  104 (162)
Q Consensus        32 ~~~ivDtpG~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~-----~~~~~~~~~~~l~~~~~~~ivv~n  104 (162)
                      ++.++||||+-+.  +...      ..++-+.++... .-++++++|+...     +.........+|.+...|+|+|+|
T Consensus       117 ~~~liDTPGQIE~FtWSAs------GsIIte~lass~-ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyktklp~ivvfN  189 (366)
T KOG1532|consen  117 DYVLIDTPGQIEAFTWSAS------GSIITETLASSF-PTVVVYVVDTPRSTSPTTFMSNMLYACSILYKTKLPFIVVFN  189 (366)
T ss_pred             CEEEEcCCCceEEEEecCC------ccchHhhHhhcC-CeEEEEEecCCcCCCchhHHHHHHHHHHHHHhccCCeEEEEe
Confidence            4999999998665  2221      344555555443 3678888886432     122223334677888999999999


Q ss_pred             ccCCCCcHHHHHHHHHHHHHHHhc---------------------CCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293          105 KTDTVFPIDVARRAMQIEESLKAN---------------------NSLVQPVMMVSSKSGAGIRSLRTVLSKIAR  158 (162)
Q Consensus       105 K~Dl~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~  158 (162)
                      |+|+.+.....+++.+++.+-...                     .-+....+.+|+.+|.|+++++.++.+.+.
T Consensus       190 K~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vd  264 (366)
T KOG1532|consen  190 KTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVD  264 (366)
T ss_pred             cccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHH
Confidence            999998888777776665543221                     112368899999999999999999987654

>cd01873 RhoBTB RhoBTB subfamily

Probab=99.34  E-value=1.1e-11  Score=84.49  Aligned_cols=107  Identities=13%  Similarity=-0.033  Sum_probs=67.8

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHH--HHHHHHHH--hCCceEEEEeccC
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDH--ELISLMER--SQTKYQVVLTKTD  107 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~--~~~~~l~~--~~~~~ivv~nK~D  107 (162)
                      ++.+|||||.             +..+..  ...+.+|+++++.|.....+-...  .+...+..  .+.|+++|.||+|
T Consensus        67 ~l~iwDTaG~-------------~~~~~~--~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~D  131 (195)
T cd01873          67 SLRLWDTFGD-------------HDKDRR--FAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLD  131 (195)
T ss_pred             EEEEEeCCCC-------------hhhhhc--ccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchh
Confidence            4889999998             221111  123567999999998765332222  24444443  2589999999999


Q ss_pred             CCCcHH-----------------HHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHh
Q 031293          108 TVFPID-----------------VARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKI  156 (162)
Q Consensus       108 l~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~  156 (162)
                      +.+...                 ..-..+..++.....+   .+++++||++|.|++++++.+.+.
T Consensus       132 L~~~~~~~~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~---~~~~E~SAkt~~~V~e~F~~~~~~  194 (195)
T cd01873         132 LRYADLDEVNRARRPLARPIKNADILPPETGRAVAKELG---IPYYETSVVTQFGVKDVFDNAIRA  194 (195)
T ss_pred             ccccccchhhhcccccccccccCCccCHHHHHHHHHHhC---CEEEEcCCCCCCCHHHHHHHHHHh
Confidence            863100                 0001123333344333   389999999999999999988754

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.34  E-value=2.5e-11  Score=80.46  Aligned_cols=108  Identities=19%  Similarity=0.199  Sum_probs=75.4

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCC--CCCccHHHHHHHH-HHhC---CceEEEEec
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW--GVKPRDHELISLM-ERSQ---TKYQVVLTK  105 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~--~~~~~~~~~~~~l-~~~~---~~~ivv~nK  105 (162)
                      ++.+|||+|+          |++..++..|++..   .++++|.|-..  .+.... .+++.+ ++.+   .-+.+|.||
T Consensus        72 rLQlWDTAGQ----------ERFrslipsY~Rds---~vaviVyDit~~~Sfe~t~-kWi~dv~~e~gs~~viI~LVGnK  137 (221)
T KOG0094|consen   72 RLQLWDTAGQ----------ERFRSLIPSYIRDS---SVAVIVYDITDRNSFENTS-KWIEDVRRERGSDDVIIFLVGNK  137 (221)
T ss_pred             EEEEEecccH----------HHHhhhhhhhccCC---eEEEEEEeccccchHHHHH-HHHHHHHhccCCCceEEEEEccc
Confidence            5889999999          77788899998776   56666666543  232222 334333 3332   457899999


Q ss_pred             cCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293          106 TDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR  158 (162)
Q Consensus       106 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~  158 (162)
                      .||.++.++....  -.....+.+   ..++.+||+.|.|+.+++..|...++
T Consensus       138 tDL~dkrqvs~eE--g~~kAkel~---a~f~etsak~g~NVk~lFrrIaa~l~  185 (221)
T KOG0094|consen  138 TDLSDKRQVSIEE--GERKAKELN---AEFIETSAKAGENVKQLFRRIAAALP  185 (221)
T ss_pred             ccccchhhhhHHH--HHHHHHHhC---cEEEEecccCCCCHHHHHHHHHHhcc
Confidence            9999887664322  223344444   38899999999999999999987654

>cd04169 RF3 RF3 subfamily

Probab=99.33  E-value=2.9e-11  Score=86.16  Aligned_cols=83  Identities=22%  Similarity=0.275  Sum_probs=60.2

Q ss_pred             CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCC
Q 031293           30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV  109 (162)
Q Consensus        30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~  109 (162)
                      +.++.++||||+             ..+..+.....+.+|++++|+|+..+.......+++.+...++|+++++||+|+.
T Consensus        70 ~~~i~liDTPG~-------------~df~~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~~~~P~iivvNK~D~~  136 (267)
T cd04169          70 DCVINLLDTPGH-------------EDFSEDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIPIITFINKLDRE  136 (267)
T ss_pred             CEEEEEEECCCc-------------hHHHHHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHhcCCCEEEEEECCccC
Confidence            557999999999             4444444444566799999999988776666667777777789999999999986


Q ss_pred             CcHHHHHHHHHHHHHHH
Q 031293          110 FPIDVARRAMQIEESLK  126 (162)
Q Consensus       110 ~~~~~~~~~~~~~~~~~  126 (162)
                      ... ..+.++.+++.++
T Consensus       137 ~a~-~~~~~~~l~~~l~  152 (267)
T cd04169         137 GRD-PLELLDEIEEELG  152 (267)
T ss_pred             CCC-HHHHHHHHHHHHC
Confidence            443 2234456665554

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>cd01858 NGP_1 NGP-1

Probab=99.32  E-value=9.9e-12  Score=81.92  Aligned_cols=88  Identities=19%  Similarity=0.141  Sum_probs=63.6

Q ss_pred             cCcccceeEEEeecCCCCCccHHHHHHHHHHh--CCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecC
Q 031293           64 TRVSLKRVCLLIDTKWGVKPRDHELISLMERS--QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSK  141 (162)
Q Consensus        64 ~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~--~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~  141 (162)
                      ....+|++++|+|++.+....+..+.+.+...  ++|+++|+||+|+.++.....+.+.    +.....  ..++++||+
T Consensus         5 ~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~~~~~~p~ilVlNKiDl~~~~~~~~~~~~----~~~~~~--~~~~~iSa~   78 (157)
T cd01858           5 VIDSSDVVIQVLDARDPMGTRCKHVEEYLKKEKPHKHLIFVLNKCDLVPTWVTARWVKI----LSKEYP--TIAFHASIN   78 (157)
T ss_pred             hhhhCCEEEEEEECCCCccccCHHHHHHHHhccCCCCEEEEEEchhcCCHHHHHHHHHH----HhcCCc--EEEEEeecc
Confidence            34567999999999988766666777777643  4899999999999865543332222    222211  236889999


Q ss_pred             CCCCHHHHHHHHHHhh
Q 031293          142 SGAGIRSLRTVLSKIA  157 (162)
Q Consensus       142 ~~~g~~~l~~~i~~~~  157 (162)
                      ++.|+++|++.+.+..
T Consensus        79 ~~~~~~~L~~~l~~~~   94 (157)
T cd01858          79 NPFGKGSLIQLLRQFS   94 (157)
T ss_pred             ccccHHHHHHHHHHHH
Confidence            9999999999998754

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=99.32  E-value=1.4e-10  Score=74.90  Aligned_cols=110  Identities=15%  Similarity=0.166  Sum_probs=70.5

Q ss_pred             CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHH----HHH---hCCceEEE
Q 031293           30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISL----MER---SQTKYQVV  102 (162)
Q Consensus        30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~----l~~---~~~~~ivv  102 (162)
                      +..+.++|..|+      ...    ..+.++|+...   |++++|+|+.....  ..++...    +.+   .+.|++++
T Consensus        59 ~~~L~iwDvGGq------~~l----r~~W~nYfest---dglIwvvDssD~~r--~~e~~~~L~~lL~eerlaG~~~Lvl  123 (185)
T KOG0073|consen   59 GYTLNIWDVGGQ------KTL----RSYWKNYFEST---DGLIWVVDSSDRMR--MQECKQELTELLVEERLAGAPLLVL  123 (185)
T ss_pred             ceEEEEEEcCCc------chh----HHHHHHhhhcc---CeEEEEEECchHHH--HHHHHHHHHHHHhhhhhcCCceEEE
Confidence            456999999999      333    44555555433   99999999975421  1122222    222   26899999


Q ss_pred             EeccCCCCcHHHHHHH--HHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293          103 LTKTDTVFPIDVARRA--MQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  157 (162)
Q Consensus       103 ~nK~Dl~~~~~~~~~~--~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~  157 (162)
                      .||.|+...-....+.  -.+.+..+.   ..++++.|||.+|+++.+-++|+...+
T Consensus       124 ank~dl~~~l~~~~i~~~~~L~~l~ks---~~~~l~~cs~~tge~l~~gidWL~~~l  177 (185)
T KOG0073|consen  124 ANKQDLPGALSLEEISKALDLEELAKS---HHWRLVKCSAVTGEDLLEGIDWLCDDL  177 (185)
T ss_pred             EecCcCccccCHHHHHHhhCHHHhccc---cCceEEEEeccccccHHHHHHHHHHHH
Confidence            9999987322222211  233333232   336999999999999999999987644

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=99.32  E-value=2.5e-11  Score=81.87  Aligned_cols=110  Identities=15%  Similarity=0.065  Sum_probs=69.1

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH--HHHHHHHHHh--CCceEEEEeccC
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMERS--QTKYQVVLTKTD  107 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~--~~~~~~l~~~--~~~~ivv~nK~D  107 (162)
                      ++.+|||+|.          +.+..+...+   .+++|+++++.|...+.+-..  ..+...+...  +.|+++|.||+|
T Consensus        54 ~l~iwDtaG~----------e~~~~~~~~~---~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~D  120 (182)
T cd04172          54 ELSLWDTSGS----------PYYDNVRPLS---YPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSD  120 (182)
T ss_pred             EEEEEECCCc----------hhhHhhhhhh---cCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChh
Confidence            4889999998          2233333334   345699999999876532222  1333444432  578999999999


Q ss_pred             CCCcHHH----------HHHHHHHHHHHHhcCCCCCCeEEeecCCCCC-HHHHHHHHHHh
Q 031293          108 TVFPIDV----------ARRAMQIEESLKANNSLVQPVMMVSSKSGAG-IRSLRTVLSKI  156 (162)
Q Consensus       108 l~~~~~~----------~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g-~~~l~~~i~~~  156 (162)
                      +.+....          .-..+..++.....+.  .+++++||++|.| +++++..+.+.
T Consensus       121 L~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~--~~~~E~SAk~~~n~v~~~F~~~~~~  178 (182)
T cd04172         121 LRTDLTTLVELSNHRQTPVSYDQGANMAKQIGA--ATYIECSALQSENSVRDIFHVATLA  178 (182)
T ss_pred             hhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCC--CEEEECCcCCCCCCHHHHHHHHHHH
Confidence            8532100          0011233334443332  3799999999998 99999988764

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=99.32  E-value=8.7e-12  Score=82.63  Aligned_cols=109  Identities=17%  Similarity=0.104  Sum_probs=66.3

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHHHHHH-----hCCceEEEEec
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER-----SQTKYQVVLTK  105 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~~l~~-----~~~~~ivv~nK  105 (162)
                      .+.++||||+....         ......++   +.+|++++++|+..+.+-.. ..++..+..     .+.|+++|+||
T Consensus        48 ~~~i~D~~g~~~~~---------~~~~~~~~---~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK  115 (165)
T cd04146          48 SLEILDTAGQQQAD---------TEQLERSI---RWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNK  115 (165)
T ss_pred             EEEEEECCCCcccc---------cchHHHHH---HhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEC
Confidence            37899999984210         11122333   34599999999976432211 123333332     26899999999


Q ss_pred             cCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCC-CCHHHHHHHHHHhh
Q 031293          106 TDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSG-AGIRSLRTVLSKIA  157 (162)
Q Consensus       106 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~-~g~~~l~~~i~~~~  157 (162)
                      +|+.....+..  +...+.....+   .+++++||++| .|+++++..+.+.+
T Consensus       116 ~Dl~~~~~v~~--~~~~~~~~~~~---~~~~e~Sa~~~~~~v~~~f~~l~~~~  163 (165)
T cd04146         116 ADLLHYRQVST--EEGEKLASELG---CLFFEVSAAEDYDGVHSVFHELCREV  163 (165)
T ss_pred             CchHHhCccCH--HHHHHHHHHcC---CEEEEeCCCCCchhHHHHHHHHHHHH
Confidence            99853222111  11222222222   48999999999 49999999998754

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.32  E-value=2.4e-11  Score=79.99  Aligned_cols=106  Identities=15%  Similarity=0.141  Sum_probs=74.0

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec--CCCCCccHHHHHHHHHH--hCCceEEEEeccC
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT--KWGVKPRDHELISLMER--SQTKYQVVLTKTD  107 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~--~~~~~~~~~~~~~~l~~--~~~~~ivv~nK~D  107 (162)
                      ++.+|||+|+          +.+......|.+..   -++++|.|-  ++.+...+.++.+.-+.  .++-++++.||+|
T Consensus        56 KlqiwDtaGq----------e~frsv~~syYr~a---~GalLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsD  122 (216)
T KOG0098|consen   56 KLQIWDTAGQ----------ESFRSVTRSYYRGA---AGALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSD  122 (216)
T ss_pred             EEEEEecCCc----------HHHHHHHHHHhccC---cceEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhh
Confidence            5999999999          55677788887776   455666554  44454444333333222  2466899999999


Q ss_pred             CCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHH
Q 031293          108 TVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSK  155 (162)
Q Consensus       108 l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~  155 (162)
                      +..+.++..  +.-+.+..+++.   .++.+||++++|+++.+.....
T Consensus       123 L~~rR~Vs~--EEGeaFA~ehgL---ifmETSakt~~~VEEaF~nta~  165 (216)
T KOG0098|consen  123 LEARREVSK--EEGEAFAREHGL---IFMETSAKTAENVEEAFINTAK  165 (216)
T ss_pred             hhccccccH--HHHHHHHHHcCc---eeehhhhhhhhhHHHHHHHHHH
Confidence            986665543  455666676665   7889999999999998877654

>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.31  E-value=2.5e-11  Score=79.85  Aligned_cols=115  Identities=17%  Similarity=0.182  Sum_probs=77.9

Q ss_pred             CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCC--CCccHHHHHHHHHHh---CCceEEEEe
Q 031293           30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG--VKPRDHELISLMERS---QTKYQVVLT  104 (162)
Q Consensus        30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~--~~~~~~~~~~~l~~~---~~~~ivv~n  104 (162)
                      +-.+.+||..|+          ++++.+.+.|...   .++++||+|+.+.  +.....++...+...   +.|+++..|
T Consensus        60 n~~f~vWDvGGq----------~k~R~lW~~Y~~~---t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aN  126 (181)
T KOG0070|consen   60 NISFTVWDVGGQ----------EKLRPLWKHYFQN---TQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFAN  126 (181)
T ss_pred             ceEEEEEecCCC----------cccccchhhhccC---CcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEec
Confidence            456999999999          2224455666543   3899999999763  333334444455433   588999999


Q ss_pred             ccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhhh
Q 031293          105 KTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARF  159 (162)
Q Consensus       105 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~~  159 (162)
                      |.|+.......++.+.+.  +.....+.+.+..++|.+|+|+.+.++|+.+.++.
T Consensus       127 KqD~~~als~~ei~~~L~--l~~l~~~~w~iq~~~a~~G~GL~egl~wl~~~~~~  179 (181)
T KOG0070|consen  127 KQDLPGALSAAEITNKLG--LHSLRSRNWHIQSTCAISGEGLYEGLDWLSNNLKK  179 (181)
T ss_pred             hhhccccCCHHHHHhHhh--hhccCCCCcEEeeccccccccHHHHHHHHHHHHhc
Confidence            999875443333222221  22233355789999999999999999999987753

>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence

Probab=99.29  E-value=4.3e-11  Score=88.05  Aligned_cols=151  Identities=21%  Similarity=0.117  Sum_probs=84.9

Q ss_pred             ChhcccCCCCceeccCCC---CcceEEEEEEe--CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEe
Q 031293            1 MLNALTRQWGVVRTSDKP---GLTQTINFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLI   75 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~---g~t~~~~~~~~--~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vi   75 (162)
                      |||+|.|-.+...-+...   .+|.....|..  -.++++||.||.|...-+.      ..+++++  +....|+++++.
T Consensus        51 fINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~pnv~lWDlPG~gt~~f~~------~~Yl~~~--~~~~yD~fiii~  122 (376)
T PF05049_consen   51 FINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKFPNVTLWDLPGIGTPNFPP------EEYLKEV--KFYRYDFFIIIS  122 (376)
T ss_dssp             HHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS-TTEEEEEE--GGGSS--H------HHHHHHT--TGGG-SEEEEEE
T ss_pred             HHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCCCCCeEEeCCCCCCCCCCH------HHHHHHc--cccccCEEEEEe
Confidence            589997753222222222   35666666655  2469999999998753221      3333332  344558755554


Q ss_pred             ecCCCCCccHHHHHHHHHHhCCceEEEEeccCCC------------CcH-HHHHHHHHHHHHHHhcCCCCCCeEEeecCC
Q 031293           76 DTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV------------FPI-DVARRAMQIEESLKANNSLVQPVMMVSSKS  142 (162)
Q Consensus        76 d~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~------------~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~  142 (162)
                      +  +.++..+.+++..+...++|+.+|-+|+|.-            ++. ..+++.+++.+.+...+...+++|.+|+..
T Consensus       123 s--~rf~~ndv~La~~i~~~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k~gv~~P~VFLVS~~d  200 (376)
T PF05049_consen  123 S--ERFTENDVQLAKEIQRMGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQKAGVSEPQVFLVSSFD  200 (376)
T ss_dssp             S--SS--HHHHHHHHHHHHTT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHCTT-SS--EEEB-TTT
T ss_pred             C--CCCchhhHHHHHHHHHcCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHHcCCCcCceEEEeCCC
Confidence            3  4577888899999999999999999999961            111 134445556666666666667999999877


Q ss_pred             C--CCHHHHHHHHHHhhhhhc
Q 031293          143 G--AGIRSLRTVLSKIARFAK  161 (162)
Q Consensus       143 ~--~g~~~l~~~i~~~~~~~k  161 (162)
                      -  .+...|.+.|...++.+|
T Consensus       201 l~~yDFp~L~~tL~~dLp~~K  221 (376)
T PF05049_consen  201 LSKYDFPKLEETLEKDLPAHK  221 (376)
T ss_dssp             TTSTTHHHHHHHHHHHS-GGG
T ss_pred             cccCChHHHHHHHHHHhHHHH
Confidence            4  568889999987776544

IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.

>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.28  E-value=6.2e-11  Score=86.12  Aligned_cols=109  Identities=25%  Similarity=0.389  Sum_probs=91.9

Q ss_pred             eEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcc--cceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCCC
Q 031293           33 LCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVS--LKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF  110 (162)
Q Consensus        33 ~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~  110 (162)
                      ++++|.+|+             .++.+..+.++.+  .++.++++.|..+++....+++..+...++|+.++++|+|+.+
T Consensus       251 vTfiDLAGh-------------~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTrEHLgl~~AL~iPfFvlvtK~Dl~~  317 (591)
T KOG1143|consen  251 VTFIDLAGH-------------AKYQKTTIHGLTGYTPHFACLVVSADRGITWTTREHLGLIAALNIPFFVLVTKMDLVD  317 (591)
T ss_pred             EEEeecccc-------------hhhheeeeeecccCCCceEEEEEEcCCCCccccHHHHHHHHHhCCCeEEEEEeecccc
Confidence            889999999             7888877776654  6999999999999999999999999999999999999999998


Q ss_pred             cHHHHHHHHHHHHHHHhc-----------------------CCCCCCeEEeecCCCCCHHHHHHHHH
Q 031293          111 PIDVARRAMQIEESLKAN-----------------------NSLVQPVMMVSSKSGAGIRSLRTVLS  154 (162)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~-----------------------~~~~~~i~~~Sa~~~~g~~~l~~~i~  154 (162)
                      +...+...+++.+.+...                       ..+..|++.+|+.+|+|++-+...+.
T Consensus       318 ~~~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~fLn  384 (591)
T KOG1143|consen  318 RQGLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRTFLN  384 (591)
T ss_pred             chhHHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHHHHh
Confidence            877777777776665442                       33457999999999999998877765

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=99.27  E-value=4.3e-11  Score=78.72  Aligned_cols=82  Identities=17%  Similarity=0.226  Sum_probs=59.5

Q ss_pred             ceeEEEeecCCCCCccHHHHH-HHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHH
Q 031293           69 KRVCLLIDTKWGVKPRDHELI-SLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIR  147 (162)
Q Consensus        69 ~~vi~vid~~~~~~~~~~~~~-~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~  147 (162)
                      |++++|+|++.+.......+. ..+...++|+++|+||+|+.++.....++..+    ....  ..+++++||.+|.|++
T Consensus         1 Dvvl~VvD~~~p~~~~~~~i~~~~~~~~~~p~IiVlNK~Dl~~~~~~~~~~~~~----~~~~--~~~ii~vSa~~~~gi~   74 (155)
T cd01849           1 DVILEVLDARDPLGTRSPDIERVLIKEKGKKLILVLNKADLVPKEVLRKWLAYL----RHSY--PTIPFKISATNGQGIE   74 (155)
T ss_pred             CEEEEEEeccCCccccCHHHHHHHHhcCCCCEEEEEechhcCCHHHHHHHHHHH----HhhC--CceEEEEeccCCcChh
Confidence            688999999887766655555 45666689999999999998654433322222    2111  2478999999999999


Q ss_pred             HHHHHHHHh
Q 031293          148 SLRTVLSKI  156 (162)
Q Consensus       148 ~l~~~i~~~  156 (162)
                      +|.+.+.+.
T Consensus        75 ~L~~~i~~~   83 (155)
T cd01849          75 KKESAFTKQ   83 (155)
T ss_pred             hHHHHHHHH
Confidence            999988654

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>cd04131 Rnd Rnd subfamily

Probab=99.25  E-value=5.2e-11  Score=80.10  Aligned_cols=110  Identities=15%  Similarity=0.056  Sum_probs=68.2

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH--HHHHHHHHHh--CCceEEEEeccC
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMERS--QTKYQVVLTKTD  107 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~--~~~~~~l~~~--~~~~ivv~nK~D  107 (162)
                      ++.+|||||.          +.+..+...+   .+++++++++.|...+-+-..  ..+...+...  +.|+++|.||+|
T Consensus        50 ~l~iwDt~G~----------~~~~~~~~~~---~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~D  116 (178)
T cd04131          50 ELSLWDTSGS----------PYYDNVRPLC---YPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTD  116 (178)
T ss_pred             EEEEEECCCc----------hhhhhcchhh---cCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChh
Confidence            4789999998          2223333333   345699999999876433222  2344444432  588999999999


Q ss_pred             CCCcHHH----------HHHHHHHHHHHHhcCCCCCCeEEeecCCCCC-HHHHHHHHHHh
Q 031293          108 TVFPIDV----------ARRAMQIEESLKANNSLVQPVMMVSSKSGAG-IRSLRTVLSKI  156 (162)
Q Consensus       108 l~~~~~~----------~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g-~~~l~~~i~~~  156 (162)
                      +.+....          .-..+..++.....+.  .+++++||++|+| +++++..+.++
T Consensus       117 L~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~--~~~~E~SA~~~~~~v~~~F~~~~~~  174 (178)
T cd04131         117 LRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGA--EIYLECSAFTSEKSVRDIFHVATMA  174 (178)
T ss_pred             hhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCC--CEEEECccCcCCcCHHHHHHHHHHH
Confidence            8532100          0001223333333332  3789999999995 99999998874

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd01899 Ygr210 Ygr210 subfamily

Probab=99.24  E-value=1.7e-10  Score=83.94  Aligned_cols=55  Identities=15%  Similarity=0.048  Sum_probs=39.0

Q ss_pred             CCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHH-HHHHhhh
Q 031293           96 QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRT-VLSKIAR  158 (162)
Q Consensus        96 ~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~-~i~~~~~  158 (162)
                      .+|+++|+||+|+.+..+..   +.+..  . .  ...+++++||+.+.++++|.+ .+.+.++
T Consensus       214 ~KPvI~VlNK~Dl~~~~~~~---~~l~~--~-~--~~~~iI~iSA~~e~~L~~L~~~~i~~~lP  269 (318)
T cd01899         214 SKPMVIAANKADIPDAENNI---SKLRL--K-Y--PDEIVVPTSAEAELALRRAAKQGLIKYDP  269 (318)
T ss_pred             CCcEEEEEEHHHccChHHHH---HHHHh--h-C--CCCeEEEEeCcccccHHHHHHhhHHHhCC
Confidence            46999999999986443322   22221  1 1  235899999999999999997 5877654

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>cd01855 YqeH YqeH

Probab=99.24  E-value=1.3e-10  Score=78.95  Aligned_cols=90  Identities=17%  Similarity=0.043  Sum_probs=58.3

Q ss_pred             cccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHH-H-HHHhcCCCCCCeEEeecCCC
Q 031293           66 VSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIE-E-SLKANNSLVQPVMMVSSKSG  143 (162)
Q Consensus        66 ~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~-~-~~~~~~~~~~~i~~~Sa~~~  143 (162)
                      ..+|++++|+|+++........+  .....++|+++|+||+|+.+........+.+. . .....+....+++++||++|
T Consensus        33 ~~ad~il~VvD~~~~~~~~~~~l--~~~~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vSA~~~  110 (190)
T cd01855          33 PKKALVVHVVDIFDFPGSLIPRL--RLFGGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLGLKPKDVILISAKKG  110 (190)
T ss_pred             cCCcEEEEEEECccCCCccchhH--HHhcCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcCCCcccEEEEECCCC
Confidence            45699999999987543433333  12234689999999999975433222222222 1 11222222247899999999


Q ss_pred             CCHHHHHHHHHHhh
Q 031293          144 AGIRSLRTVLSKIA  157 (162)
Q Consensus       144 ~g~~~l~~~i~~~~  157 (162)
                      .|+++|+++|.+.+
T Consensus       111 ~gi~eL~~~l~~~l  124 (190)
T cd01855         111 WGVEELINAIKKLA  124 (190)
T ss_pred             CCHHHHHHHHHHHh
Confidence            99999999998765

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>PTZ00416 elongation factor 2; Provisional

Probab=99.24  E-value=1.7e-10  Score=93.69  Aligned_cols=83  Identities=13%  Similarity=0.202  Sum_probs=67.9

Q ss_pred             CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCC-
Q 031293           31 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV-  109 (162)
Q Consensus        31 ~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~-  109 (162)
                      ..+.++|||||             ..+..+...+.+.+|++++|+|+.+++..++..++..+...++|+++++||+|+. 
T Consensus        92 ~~i~liDtPG~-------------~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~~~~p~iv~iNK~D~~~  158 (836)
T PTZ00416         92 FLINLIDSPGH-------------VDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQERIRPVLFINKVDRAI  158 (836)
T ss_pred             eEEEEEcCCCH-------------HhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHHcCCCEEEEEEChhhhh
Confidence            35899999999             6777788888888999999999999999999889888888889999999999986 


Q ss_pred             ---C--c----HHHHHHHHHHHHHHH
Q 031293          110 ---F--P----IDVARRAMQIEESLK  126 (162)
Q Consensus       110 ---~--~----~~~~~~~~~~~~~~~  126 (162)
                         .  .    ....+.++.++..+.
T Consensus       159 ~~~~~~~~~~~~~~~~ii~~in~~l~  184 (836)
T PTZ00416        159 LELQLDPEEIYQNFVKTIENVNVIIA  184 (836)
T ss_pred             hhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence               1  1    334566666665554

>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]

Probab=99.23  E-value=7.9e-11  Score=88.21  Aligned_cols=146  Identities=17%  Similarity=0.148  Sum_probs=92.3

Q ss_pred             hhcccCCCCceeccCCCCcceEEEEEEeCC---ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecC
Q 031293            2 LNALTRQWGVVRTSDKPGLTQTINFFKLGT---KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTK   78 (162)
Q Consensus         2 in~L~~~~~~~~~~~~~g~t~~~~~~~~~~---~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~   78 (162)
                      +|.++..  ...+-+++.||+.+..-.+..   +|.++||||+-+-  +...+...+...-.+++.++  -+|+++.|-+
T Consensus       185 ~~~vtra--dvevqpYaFTTksL~vGH~dykYlrwQViDTPGILD~--plEdrN~IEmqsITALAHLr--aaVLYfmDLS  258 (620)
T KOG1490|consen  185 NNKVTRA--DDEVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDR--PEEDRNIIEMQIITALAHLR--SAVLYFMDLS  258 (620)
T ss_pred             ccccccc--ccccCCcccccchhhhhhhhhheeeeeecCCccccCc--chhhhhHHHHHHHHHHHHhh--hhheeeeech
Confidence            4555555  345777888888666533322   4899999998332  22222223333334455555  4778888876


Q ss_pred             CC--CCcc-HHHHHHHHHHh--CCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHH
Q 031293           79 WG--VKPR-DHELISLMERS--QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVL  153 (162)
Q Consensus        79 ~~--~~~~-~~~~~~~l~~~--~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i  153 (162)
                      +.  .+.. ...++..++..  +.|.|+|+||+|+...+...+.-+.+.+.+...+.  ++++..|+.+.+|+.++...-
T Consensus       259 e~CGySva~QvkLfhsIKpLFaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~--v~v~~tS~~~eegVm~Vrt~A  336 (620)
T KOG1490|consen  259 EMCGYSVAAQVKLYHSIKPLFANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGN--VKVVQTSCVQEEGVMDVRTTA  336 (620)
T ss_pred             hhhCCCHHHHHHHHHHhHHHhcCCceEEEeecccccCccccCHHHHHHHHHHHhccC--ceEEEecccchhceeeHHHHH
Confidence            53  2221 23344555543  68999999999999777665555555555554443  699999999999998877665


Q ss_pred             HH
Q 031293          154 SK  155 (162)
Q Consensus       154 ~~  155 (162)
                      .+
T Consensus       337 Ce  338 (620)
T KOG1490|consen  337 CE  338 (620)
T ss_pred             HH
Confidence            54

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=99.22  E-value=9e-10  Score=76.48  Aligned_cols=110  Identities=15%  Similarity=0.061  Sum_probs=66.6

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHH--HHHHHHHH--hCCceEEEEeccC
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDH--ELISLMER--SQTKYQVVLTKTD  107 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~--~~~~~l~~--~~~~~ivv~nK~D  107 (162)
                      .+.+|||+|.          +.+..+...+   ...+|+++++.|..++-+-...  .+...+..  .+.|+++|.||+|
T Consensus        50 ~L~iwDt~G~----------e~~~~l~~~~---~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~D  116 (222)
T cd04173          50 ELNMWDTSGS----------SYYDNVRPLA---YPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLD  116 (222)
T ss_pred             EEEEEeCCCc----------HHHHHHhHHh---ccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcc
Confidence            4789999998          2223333333   3456999999998765222111  12223332  2589999999999


Q ss_pred             CCCcHH-HHH---------HHHHHHHHHHhcCCCCCCeEEeecCCCC-CHHHHHHHHHHh
Q 031293          108 TVFPID-VAR---------RAMQIEESLKANNSLVQPVMMVSSKSGA-GIRSLRTVLSKI  156 (162)
Q Consensus       108 l~~~~~-~~~---------~~~~~~~~~~~~~~~~~~i~~~Sa~~~~-g~~~l~~~i~~~  156 (162)
                      +..... ...         ..+.........+.  .+++++||+++. |++++|......
T Consensus       117 L~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~--~~y~E~SAk~~~~~V~~~F~~~~~~  174 (222)
T cd04173         117 MRTDLATLRELSKQRLIPVTHEQGTVLAKQVGA--VSYVECSSRSSERSVRDVFHVATVA  174 (222)
T ss_pred             cccchhhhhhhhhccCCccCHHHHHHHHHHcCC--CEEEEcCCCcCCcCHHHHHHHHHHH
Confidence            864211 100         01122222333332  489999999988 599999988764

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]

Probab=99.21  E-value=1.8e-10  Score=85.07  Aligned_cols=97  Identities=21%  Similarity=0.311  Sum_probs=71.1

Q ss_pred             cCCCCcceEEEE--EEe-CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHH
Q 031293           15 SDKPGLTQTINF--FKL-GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISL   91 (162)
Q Consensus        15 ~~~~g~t~~~~~--~~~-~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~   91 (162)
                      ++..|++..-..  |.. +..+.+.|||||             +++-+..++.+..+|.++-|||+-.++..++..+++-
T Consensus        62 EkqRGISVtsSVMqF~Y~~~~iNLLDTPGH-------------eDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~KLfeV  128 (528)
T COG4108          62 EKQRGISVTSSVMQFDYADCLVNLLDTPGH-------------EDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTLKLFEV  128 (528)
T ss_pred             HHhcCceEEeeEEEeccCCeEEeccCCCCc-------------cccchhHHHHHHhhheeeEEEecccCccHHHHHHHHH
Confidence            334665443333  333 556999999999             6666666666677799999999999999999999998


Q ss_pred             HHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHH
Q 031293           92 MERSQTKYQVVLTKTDTVFPIDVARRAMQIEESL  125 (162)
Q Consensus        92 l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~  125 (162)
                      ++..++|++-++||+|...+... +.+..+++.+
T Consensus       129 crlR~iPI~TFiNKlDR~~rdP~-ELLdEiE~~L  161 (528)
T COG4108         129 CRLRDIPIFTFINKLDREGRDPL-ELLDEIEEEL  161 (528)
T ss_pred             HhhcCCceEEEeeccccccCChH-HHHHHHHHHh
Confidence            88889999999999998654433 2333444443

>cd04103 Centaurin_gamma Centaurin gamma

Probab=99.21  E-value=1.2e-10  Score=76.90  Aligned_cols=103  Identities=10%  Similarity=0.045  Sum_probs=64.6

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHHHHHH----hCCceEEEEecc
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKT  106 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~~l~~----~~~~~ivv~nK~  106 (162)
                      .+.++||+|..             .  ..+.   +.+|++++|.|..+.-+-.. ..++..+..    .++|+++|.||.
T Consensus        48 ~l~i~D~~g~~-------------~--~~~~---~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~  109 (158)
T cd04103          48 LLLIRDEGGAP-------------D--AQFA---SWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQD  109 (158)
T ss_pred             EEEEEECCCCC-------------c--hhHH---hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHH
Confidence            47899999982             1  1222   24589999999876432222 223344432    247999999999


Q ss_pred             CCCC--cHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHh
Q 031293          107 DTVF--PIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKI  156 (162)
Q Consensus       107 Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~  156 (162)
                      |+..  +..+..  +..++......  ..+++++||++|.|+++++..+.+.
T Consensus       110 Dl~~~~~~~v~~--~~~~~~~~~~~--~~~~~e~SAk~~~~i~~~f~~~~~~  157 (158)
T cd04103         110 AISESNPRVIDD--ARARQLCADMK--RCSYYETCATYGLNVERVFQEAAQK  157 (158)
T ss_pred             HhhhcCCcccCH--HHHHHHHHHhC--CCcEEEEecCCCCCHHHHHHHHHhh
Confidence            9842  222221  12222232221  2589999999999999999998754

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=99.21  E-value=6e-10  Score=81.31  Aligned_cols=110  Identities=20%  Similarity=0.183  Sum_probs=72.5

Q ss_pred             CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCC
Q 031293           30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV  109 (162)
Q Consensus        30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~  109 (162)
                      +..+.++||+|.|...          ..+.      ..+|.+++++++..+   .+.+.... ....+.-++|+||+|+.
T Consensus       148 g~d~viieT~Gv~qs~----------~~i~------~~aD~vlvv~~p~~g---d~iq~~k~-gi~E~aDIiVVNKaDl~  207 (332)
T PRK09435        148 GYDVILVETVGVGQSE----------TAVA------GMVDFFLLLQLPGAG---DELQGIKK-GIMELADLIVINKADGD  207 (332)
T ss_pred             CCCEEEEECCCCccch----------hHHH------HhCCEEEEEecCCch---HHHHHHHh-hhhhhhheEEeehhccc
Confidence            4579999999997431          1121      135999999763322   22222111 01233348999999998


Q ss_pred             CcHHHHHHHHHHHHHHHhcC----CCCCCeEEeecCCCCCHHHHHHHHHHhhhh
Q 031293          110 FPIDVARRAMQIEESLKANN----SLVQPVMMVSSKSGAGIRSLRTVLSKIARF  159 (162)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~----~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~~  159 (162)
                      ...........++..+....    ....|++++||+++.|+++|++.|.+..++
T Consensus       208 ~~~~a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~~  261 (332)
T PRK09435        208 NKTAARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRAA  261 (332)
T ss_pred             chhHHHHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            76656666666766665422    122589999999999999999999987654

>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.20  E-value=3.7e-10  Score=73.64  Aligned_cols=117  Identities=17%  Similarity=0.155  Sum_probs=79.3

Q ss_pred             CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCC--CCccHHHHHHHHH---HhCCceEEEEe
Q 031293           30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG--VKPRDHELISLME---RSQTKYQVVLT  104 (162)
Q Consensus        30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~--~~~~~~~~~~~l~---~~~~~~ivv~n  104 (162)
                      +..+.+||..|+      ...++.|..+...+       +++++++||..+  +......+-..+.   ..+.|+++.+|
T Consensus        68 ~~~l~fwdlgGQ------e~lrSlw~~yY~~~-------H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lan  134 (197)
T KOG0076|consen   68 NAPLSFWDLGGQ------ESLRSLWKKYYWLA-------HGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLAN  134 (197)
T ss_pred             cceeEEEEcCCh------HHHHHHHHHHHHHh-------ceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcc
Confidence            556999999999      55555555555444       899999999762  2111111111111   13799999999


Q ss_pred             ccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhhhh
Q 031293          105 KTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARFA  160 (162)
Q Consensus       105 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~~~  160 (162)
                      |.|+.+..+..+....+.. ......+..++.++||++|+|+++-..|+...++..
T Consensus       135 kqd~q~~~~~~El~~~~~~-~e~~~~rd~~~~pvSal~gegv~egi~w~v~~~~kn  189 (197)
T KOG0076|consen  135 KQDLQNAMEAAELDGVFGL-AELIPRRDNPFQPVSALTGEGVKEGIEWLVKKLEKN  189 (197)
T ss_pred             hhhhhhhhhHHHHHHHhhh-hhhcCCccCccccchhhhcccHHHHHHHHHHHHhhc
Confidence            9999766555544433332 344445567999999999999999999998877643

>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.20  E-value=2.1e-10  Score=72.62  Aligned_cols=114  Identities=17%  Similarity=0.187  Sum_probs=75.9

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCC--CCCccHHHHHHHHHHh---CCceEEEEecc
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW--GVKPRDHELISLMERS---QTKYQVVLTKT  106 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~--~~~~~~~~~~~~l~~~---~~~~ivv~nK~  106 (162)
                      ++.++|..|.+.      .    ..+.+-|...   .|.+++|+|+.+  .++....++..+|.+.   +..+++++||.
T Consensus        63 k~~vwdLggqtS------i----rPyWRcYy~d---t~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKq  129 (182)
T KOG0072|consen   63 KFQVWDLGGQTS------I----RPYWRCYYAD---TDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQ  129 (182)
T ss_pred             cceeeEccCccc------c----cHHHHHHhcc---cceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccc
Confidence            588888888732      2    3444455433   399999999865  3444555666666543   45689999999


Q ss_pred             CCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhhhh
Q 031293          107 DTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARFA  160 (162)
Q Consensus       107 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~~~  160 (162)
                      |........+....+.  +.....+.+.++..||.+|.|+++..+|+.+-++..
T Consensus       130 D~~~~~t~~E~~~~L~--l~~Lk~r~~~Iv~tSA~kg~Gld~~~DWL~~~l~~~  181 (182)
T KOG0072|consen  130 DYSGALTRSEVLKMLG--LQKLKDRIWQIVKTSAVKGEGLDPAMDWLQRPLKSR  181 (182)
T ss_pred             cchhhhhHHHHHHHhC--hHHHhhheeEEEeeccccccCCcHHHHHHHHHHhcc
Confidence            9764333333222221  222233457999999999999999999999877643

>KOG0394 consensus Ras-related GTPase [General function prediction only]

Probab=99.18  E-value=2.9e-10  Score=74.80  Aligned_cols=109  Identities=11%  Similarity=0.096  Sum_probs=71.3

Q ss_pred             eEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCC--CCCccHHHHHHHHHHh------CCceEEEEe
Q 031293           33 LCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW--GVKPRDHELISLMERS------QTKYQVVLT  104 (162)
Q Consensus        33 ~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~--~~~~~~~~~~~~l~~~------~~~~ivv~n  104 (162)
                      +.+|||+|+          +++..+-..+   .+++|+++++.|-..  .+...+.+.-+++...      ..|++++.|
T Consensus        60 lQiWDTAGQ----------ERFqsLg~aF---YRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGN  126 (210)
T KOG0394|consen   60 LQIWDTAGQ----------ERFQSLGVAF---YRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGN  126 (210)
T ss_pred             EEEEecccH----------HHhhhcccce---ecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcc
Confidence            779999999          4444443333   355699999977543  2333344444444432      478999999


Q ss_pred             ccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHh
Q 031293          105 KTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKI  156 (162)
Q Consensus       105 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~  156 (162)
                      |+|+..........+..++-++..+.  .|++.+||+...++++.+..+...
T Consensus       127 KiD~~~~~~r~VS~~~Aq~WC~s~gn--ipyfEtSAK~~~NV~~AFe~ia~~  176 (210)
T KOG0394|consen  127 KIDVDGGKSRQVSEKKAQTWCKSKGN--IPYFETSAKEATNVDEAFEEIARR  176 (210)
T ss_pred             cccCCCCccceeeHHHHHHHHHhcCC--ceeEEecccccccHHHHHHHHHHH
Confidence            99996532221122333444555544  799999999999999999887653

>cd04129 Rho2 Rho2 subfamily

Probab=99.17  E-value=1.5e-10  Score=78.43  Aligned_cols=111  Identities=16%  Similarity=0.057  Sum_probs=65.2

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH--HHHHHHHHHh--CCceEEEEeccC
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMERS--QTKYQVVLTKTD  107 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~--~~~~~~l~~~--~~~~ivv~nK~D  107 (162)
                      .+.++||||....          ......   ..+.+++++++.|....-+-..  ..++..+...  ++|+++|.||+|
T Consensus        50 ~l~i~Dt~g~~~~----------~~~~~~---~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~D  116 (187)
T cd04129          50 QLALWDTAGQEEY----------ERLRPL---SYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKD  116 (187)
T ss_pred             EEEEEECCCChhc----------cccchh---hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChh
Confidence            4789999997211          111111   2245688888888764322211  2244444332  589999999999


Q ss_pred             CCCcHHH--------HHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293          108 TVFPIDV--------ARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  157 (162)
Q Consensus       108 l~~~~~~--------~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~  157 (162)
                      +.+....        ....+.........+  ..+++++||++|.|++++++++.+.+
T Consensus       117 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~e~Sa~~~~~v~~~f~~l~~~~  172 (187)
T cd04129         117 LRQDAVAKEEYRTQRFVPIQQGKRVAKEIG--AKKYMECSALTGEGVDDVFEAATRAA  172 (187)
T ss_pred             hhhCcccccccccCCcCCHHHHHHHHHHhC--CcEEEEccCCCCCCHHHHHHHHHHHH
Confidence            8532100        000011222222222  24799999999999999999998654

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=99.16  E-value=2.2e-10  Score=74.21  Aligned_cols=78  Identities=15%  Similarity=0.112  Sum_probs=56.1

Q ss_pred             HHhcCcccceeEEEeecCCCCCccHHHHHHHHHHh--CCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEe
Q 031293           61 YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERS--QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMV  138 (162)
Q Consensus        61 ~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~--~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  138 (162)
                      ..+....+|++++|+|++.+....+..+..++...  ++|+++|+||+|+.++....    .+.+.+...+   .+++++
T Consensus         5 ~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~~~k~~iivlNK~DL~~~~~~~----~~~~~~~~~~---~~ii~i   77 (141)
T cd01857           5 LWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEVDPRKKNILLLNKADLLTEEQRK----AWAEYFKKEG---IVVVFF   77 (141)
T ss_pred             HHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhccCCCcEEEEEechhcCCHHHHH----HHHHHHHhcC---CeEEEE
Confidence            33444566999999999988877777777777765  79999999999997654433    2233333333   478999


Q ss_pred             ecCCCCC
Q 031293          139 SSKSGAG  145 (162)
Q Consensus       139 Sa~~~~g  145 (162)
                      ||.++.+
T Consensus        78 Sa~~~~~   84 (141)
T cd01857          78 SALKENA   84 (141)
T ss_pred             EecCCCc
Confidence            9988653

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.16  E-value=3.7e-09  Score=71.37  Aligned_cols=116  Identities=17%  Similarity=0.238  Sum_probs=70.3

Q ss_pred             CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCC---CccHHHHHHHHHH-----hCCceEE
Q 031293           30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV---KPRDHELISLMER-----SQTKYQV  101 (162)
Q Consensus        30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~---~~~~~~~~~~l~~-----~~~~~iv  101 (162)
                      +....+||.|||          .+...-+.+++.....+..++||+|+....   .....-+++.+..     ...|+++
T Consensus        81 s~~~~LVD~PGH----------~rlR~kl~e~~~~~~~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLI  150 (238)
T KOG0090|consen   81 SENVTLVDLPGH----------SRLRRKLLEYLKHNYSAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLI  150 (238)
T ss_pred             CcceEEEeCCCc----------HHHHHHHHHHccccccceeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEE
Confidence            334799999999          222334555656556789999999986422   1112222333322     2477999


Q ss_pred             EEeccCCCCcHHHHHHHHHHHHHHHhc---------------------------------CCCCCCeEEeecCCCCCHHH
Q 031293          102 VLTKTDTVFPIDVARRAMQIEESLKAN---------------------------------NSLVQPVMMVSSKSGAGIRS  148 (162)
Q Consensus       102 v~nK~Dl~~~~~~~~~~~~~~~~~~~~---------------------------------~~~~~~i~~~Sa~~~~g~~~  148 (162)
                      +.||.|+......+.+.+.++++++..                                 ....+.+.+.|++.+ ++++
T Consensus       151 aCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~  229 (238)
T KOG0090|consen  151 ACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDIAKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQ  229 (238)
T ss_pred             EecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhccccccccccccccccccccchhhcccceeEEeecccCcC-ChHH
Confidence            999999874333333333333333210                                 111245677788887 8999


Q ss_pred             HHHHHHHh
Q 031293          149 LRTVLSKI  156 (162)
Q Consensus       149 l~~~i~~~  156 (162)
                      +.+||.+.
T Consensus       230 ~~~wi~~~  237 (238)
T KOG0090|consen  230 WESWIREA  237 (238)
T ss_pred             HHHHHHHh
Confidence            99999875

>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]

Probab=99.15  E-value=1.3e-09  Score=69.30  Aligned_cols=123  Identities=16%  Similarity=0.159  Sum_probs=81.0

Q ss_pred             ceEEEEEEeC---CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCC--CCccHHHHHHHHHH-
Q 031293           21 TQTINFFKLG---TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG--VKPRDHELISLMER-   94 (162)
Q Consensus        21 t~~~~~~~~~---~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~--~~~~~~~~~~~l~~-   94 (162)
                      |+..+++.+.   -...++|.||+..          +..+.+.|.++   ++.+++++||.++  ++....++.+.|.. 
T Consensus        52 tvGfnmrk~tkgnvtiklwD~gGq~r----------frsmWerycR~---v~aivY~VDaad~~k~~~sr~EL~~LL~k~  118 (186)
T KOG0075|consen   52 TVGFNMRKVTKGNVTIKLWDLGGQPR----------FRSMWERYCRG---VSAIVYVVDAADPDKLEASRSELHDLLDKP  118 (186)
T ss_pred             cccceeEEeccCceEEEEEecCCCcc----------HHHHHHHHhhc---CcEEEEEeecCCcccchhhHHHHHHHhcch
Confidence            4444444441   1367999999932          35556666554   4899999999763  34444555555543 


Q ss_pred             --hCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293           95 --SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR  158 (162)
Q Consensus        95 --~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~  158 (162)
                        .++|+++..||.|+.+.-.-....+..  -+.....+.+-.+.+||+...+++.+++||.++..
T Consensus       119 ~l~gip~LVLGnK~d~~~AL~~~~li~rm--gL~sitdREvcC~siScke~~Nid~~~~Wli~hsk  182 (186)
T KOG0075|consen  119 SLTGIPLLVLGNKIDLPGALSKIALIERM--GLSSITDREVCCFSISCKEKVNIDITLDWLIEHSK  182 (186)
T ss_pred             hhcCCcEEEecccccCcccccHHHHHHHh--CccccccceEEEEEEEEcCCccHHHHHHHHHHHhh
Confidence              379999999999987433222222111  12233345567888999999999999999998764

>PRK07560 elongation factor EF-2; Reviewed

Probab=99.15  E-value=4.3e-10  Score=90.34  Aligned_cols=67  Identities=18%  Similarity=0.299  Sum_probs=55.5

Q ss_pred             CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCC
Q 031293           30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV  109 (162)
Q Consensus        30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~  109 (162)
                      +..+.++|||||             .++..+...+++.+|++++|+|+.+++...+..++..+...++|.++++||+|..
T Consensus        86 ~~~i~liDtPG~-------------~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~~~~~~iv~iNK~D~~  152 (731)
T PRK07560         86 EYLINLIDTPGH-------------VDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALRERVKPVLFINKVDRL  152 (731)
T ss_pred             cEEEEEEcCCCc-------------cChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHHcCCCeEEEEECchhh
Confidence            345889999999             4555566666677899999999999988888888887776788999999999975

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=99.15  E-value=2.7e-09  Score=75.26  Aligned_cols=108  Identities=19%  Similarity=0.139  Sum_probs=70.0

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT   77 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~   77 (162)
                      |+|+|++. ..+.++..++.|+....+..   +.++.++||||+++........+.....+.+++.. ..+++++++...
T Consensus        47 liNaLlg~-~~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I~~~l~~-~~idvIL~V~rl  124 (249)
T cd01853          47 TINSIFGE-RKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSSIKRYLKK-KTPDVVLYVDRL  124 (249)
T ss_pred             HHHHHhCC-CCcccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHHHHHHHHhc-cCCCEEEEEEcC
Confidence            58999999 56777887777776665433   55799999999987632221222222334555543 246888888655


Q ss_pred             CC-CCCccHHHHHHHHHHh-C----CceEEEEeccCCCC
Q 031293           78 KW-GVKPRDHELISLMERS-Q----TKYQVVLTKTDTVF  110 (162)
Q Consensus        78 ~~-~~~~~~~~~~~~l~~~-~----~~~ivv~nK~Dl~~  110 (162)
                      .. .....+..+++.+... +    .++++|+||+|...
T Consensus       125 D~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~  163 (249)
T cd01853         125 DMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSP  163 (249)
T ss_pred             CCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCC
Confidence            43 3455556677666542 2    56999999999873

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

Probab=99.14  E-value=1.9e-10  Score=90.88  Aligned_cols=98  Identities=20%  Similarity=0.269  Sum_probs=74.3

Q ss_pred             cCCCCcceEEE---EEEeC-CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHH
Q 031293           15 SDKPGLTQTIN---FFKLG-TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELIS   90 (162)
Q Consensus        15 ~~~~g~t~~~~---~~~~~-~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~   90 (162)
                      +...|.|....   ++.-+ .+++++|||||             -+|..+..++++.+|++++|+|+.+++..+....++
T Consensus        56 EqeRGITI~saa~s~~~~~~~~iNlIDTPGH-------------VDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~r  122 (697)
T COG0480          56 EQERGITITSAATTLFWKGDYRINLIDTPGH-------------VDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWR  122 (697)
T ss_pred             HHhcCCEEeeeeeEEEEcCceEEEEeCCCCc-------------cccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHH
Confidence            34566665333   23333 68999999999             677777777788889999999999999999999999


Q ss_pred             HHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHH
Q 031293           91 LMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLK  126 (162)
Q Consensus        91 ~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~  126 (162)
                      .+...++|.++++||+|.+..+ .....+.+...+.
T Consensus       123 qa~~~~vp~i~fiNKmDR~~a~-~~~~~~~l~~~l~  157 (697)
T COG0480         123 QADKYGVPRILFVNKMDRLGAD-FYLVVEQLKERLG  157 (697)
T ss_pred             HHhhcCCCeEEEEECccccccC-hhhhHHHHHHHhC
Confidence            9999999999999999987433 3333344444444

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.14  E-value=4.6e-10  Score=74.00  Aligned_cols=109  Identities=17%  Similarity=0.170  Sum_probs=69.4

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHHHHHHh---CCceEEEEeccC
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS---QTKYQVVLTKTD  107 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~~l~~~---~~~~ivv~nK~D  107 (162)
                      .+.++|++|...          +..+...++   +.+|+++++.|....-+-.. ..++..+...   +.|++++.||.|
T Consensus        49 ~l~i~D~~g~~~----------~~~~~~~~~---~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D  115 (162)
T PF00071_consen   49 NLEIWDTSGQER----------FDSLRDIFY---RNSDAIIIVFDVTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSD  115 (162)
T ss_dssp             EEEEEEETTSGG----------GHHHHHHHH---TTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTT
T ss_pred             cccccccccccc----------ccccccccc---cccccccccccccccccccccccccccccccccccccceeeecccc
Confidence            488999999821          233333333   34589999998765321111 1233443322   478999999999


Q ss_pred             CCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293          108 TVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR  158 (162)
Q Consensus       108 l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~  158 (162)
                      +.+...+..  +..++.....+   .+++.+||+++.|+.+++..+.+.+.
T Consensus       116 ~~~~~~v~~--~~~~~~~~~~~---~~~~e~Sa~~~~~v~~~f~~~i~~i~  161 (162)
T PF00071_consen  116 LSDEREVSV--EEAQEFAKELG---VPYFEVSAKNGENVKEIFQELIRKIL  161 (162)
T ss_dssp             GGGGSSSCH--HHHHHHHHHTT---SEEEEEBTTTTTTHHHHHHHHHHHHH
T ss_pred             ccccccchh--hHHHHHHHHhC---CEEEEEECCCCCCHHHHHHHHHHHHh
Confidence            875332221  23344444443   59999999999999999999987653

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.13  E-value=6.3e-10  Score=70.17  Aligned_cols=114  Identities=17%  Similarity=0.190  Sum_probs=78.0

Q ss_pred             CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCC--CCccHHHHHHHHHHh---CCceEEEEe
Q 031293           30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG--VKPRDHELISLMERS---QTKYQVVLT  104 (162)
Q Consensus        30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~--~~~~~~~~~~~l~~~---~~~~ivv~n  104 (162)
                      +-+|..+|..|.          +..+.+...|..+.   ..++||+|+...  +.....++...+...   ..++++..|
T Consensus        60 N~kfNvwdvGGq----------d~iRplWrhYy~gt---qglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlAN  126 (180)
T KOG0071|consen   60 NVKFNVWDVGGQ----------DKIRPLWRHYYTGT---QGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILAN  126 (180)
T ss_pred             eeEEeeeeccCc----------hhhhHHHHhhccCC---ceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEec
Confidence            446999999998          33356667776655   789999998643  223333444444432   478999999


Q ss_pred             ccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293          105 KTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR  158 (162)
Q Consensus       105 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~  158 (162)
                      |.|+.+....+++...++  +.....+.+-+.++||.+|.|+.+-+.|+.+.++
T Consensus       127 kQDlp~A~~pqei~d~le--Le~~r~~~W~vqp~~a~~gdgL~eglswlsnn~~  178 (180)
T KOG0071|consen  127 KQDLPDAMKPQEIQDKLE--LERIRDRNWYVQPSCALSGDGLKEGLSWLSNNLK  178 (180)
T ss_pred             CcccccccCHHHHHHHhc--cccccCCccEeeccccccchhHHHHHHHHHhhcc
Confidence            999986554444333332  2223345578999999999999999999987664

>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]

Probab=99.13  E-value=1.4e-09  Score=79.29  Aligned_cols=111  Identities=23%  Similarity=0.243  Sum_probs=92.6

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcc--cceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCC
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVS--LKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV  109 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~  109 (162)
                      -++++|.+||             +++++..+-++.+  .|...+++.++.++-....+++......++|+.+|++|+|+.
T Consensus       220 viTFIDLAGH-------------EkYLKTTvFGMTGH~PDf~MLMiGaNaGIiGmTKEHLgLALaL~VPVfvVVTKIDMC  286 (641)
T KOG0463|consen  220 VITFIDLAGH-------------EKYLKTTVFGMTGHMPDFTMLMIGANAGIIGMTKEHLGLALALHVPVFVVVTKIDMC  286 (641)
T ss_pred             eEEEEeccch-------------hhhhheeeeccccCCCCceEEEecccccceeccHHhhhhhhhhcCcEEEEEEeeccC
Confidence            3889999999             8888887666644  799999999999988888899888888899999999999999


Q ss_pred             CcHHHHHHHHHHHHHHHhc-----------------------CCCCCCeEEeecCCCCCHHHHHHHHHH
Q 031293          110 FPIDVARRAMQIEESLKAN-----------------------NSLVQPVMMVSSKSGAGIRSLRTVLSK  155 (162)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~i~~~Sa~~~~g~~~l~~~i~~  155 (162)
                      ...-.++.++.+...+...                       ..+..|+|.+|..+|++++-|..++.-
T Consensus       287 PANiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLkmFLNl  355 (641)
T KOG0463|consen  287 PANILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLKMFLNL  355 (641)
T ss_pred             cHHHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHHHHHhh
Confidence            8777888777777777652                       223579999999999999988877753

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=99.10  E-value=1.3e-09  Score=88.68  Aligned_cols=66  Identities=15%  Similarity=0.184  Sum_probs=60.3

Q ss_pred             CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCC
Q 031293           31 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV  109 (162)
Q Consensus        31 ~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~  109 (162)
                      ..++++|||||             .++..+...+.+.+|++++|+|+.+++...+..++..+...++|+++++||+|..
T Consensus        98 ~~inliDtPGh-------------~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~~~~p~i~~iNK~D~~  163 (843)
T PLN00116         98 YLINLIDSPGH-------------VDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC  163 (843)
T ss_pred             eEEEEECCCCH-------------HHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHHCCCCEEEEEECCccc
Confidence            34789999999             8888888888899999999999999999999888888888899999999999987

>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]

Probab=99.10  E-value=1.2e-09  Score=68.30  Aligned_cols=111  Identities=18%  Similarity=0.178  Sum_probs=75.7

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHHHHHHh---CCceEEEEeccC
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS---QTKYQVVLTKTD  107 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~~l~~~---~~~~ivv~nK~D  107 (162)
                      ++.+|||+|+          +++......|.+..   |..+++.|.....+-.. ..++..+.+.   .+.+.++.||+|
T Consensus        48 klqiwdtagq----------erfrsvt~ayyrda---~allllydiankasfdn~~~wlsei~ey~k~~v~l~llgnk~d  114 (192)
T KOG0083|consen   48 KLQIWDTAGQ----------ERFRSVTHAYYRDA---DALLLLYDIANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCD  114 (192)
T ss_pred             EEEEeeccch----------HHHhhhhHhhhccc---ceeeeeeecccchhHHHHHHHHHHHHHHHHhhHhHhhhccccc
Confidence            5889999999          55666667776554   88888888654322222 2244444443   366889999999


Q ss_pred             CCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhhhh
Q 031293          108 TVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARFA  160 (162)
Q Consensus       108 l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~~~  160 (162)
                      +.++..+..  ++-++....++.   |++.+||++|.+++-.+-.|.+.+...
T Consensus       115 ~a~er~v~~--ddg~kla~~y~i---pfmetsaktg~nvd~af~~ia~~l~k~  162 (192)
T KOG0083|consen  115 LAHERAVKR--DDGEKLAEAYGI---PFMETSAKTGFNVDLAFLAIAEELKKL  162 (192)
T ss_pred             cchhhcccc--chHHHHHHHHCC---CceeccccccccHhHHHHHHHHHHHHh
Confidence            975443321  334445555654   999999999999999999988766543

>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]

Probab=99.10  E-value=2.5e-09  Score=69.18  Aligned_cols=108  Identities=19%  Similarity=0.196  Sum_probs=74.4

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHH-HHHHHHH-HhC---Cc-eEEEEec
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDH-ELISLME-RSQ---TK-YQVVLTK  105 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~-~~~~~l~-~~~---~~-~ivv~nK  105 (162)
                      ++.+|||+|+          +++..+.+.|.++.   -++++|.|.....+-... .++.... ...   ++ +.+|..|
T Consensus        59 klqlwdtagq----------erfrsitksyyrns---vgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhK  125 (213)
T KOG0091|consen   59 KLQLWDTAGQ----------ERFRSITKSYYRNS---VGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHK  125 (213)
T ss_pred             EEEEeeccch----------HHHHHHHHHHhhcc---cceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccc
Confidence            5899999999          67788888887655   688888887543211111 1222211 112   23 7999999


Q ss_pred             cCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293          106 TDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  157 (162)
Q Consensus       106 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~  157 (162)
                      +|+.+..++..  +..+++...++.   .++.+||++|.|+++.+..+.+.+
T Consensus       126 sDL~SqRqVt~--EEaEklAa~hgM---~FVETSak~g~NVeEAF~mlaqeI  172 (213)
T KOG0091|consen  126 SDLQSQRQVTA--EEAEKLAASHGM---AFVETSAKNGCNVEEAFDMLAQEI  172 (213)
T ss_pred             cchhhhccccH--HHHHHHHHhcCc---eEEEecccCCCcHHHHHHHHHHHH
Confidence            99986554432  445556666665   899999999999999999887654

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=99.09  E-value=1.3e-09  Score=76.42  Aligned_cols=118  Identities=22%  Similarity=0.254  Sum_probs=59.3

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcC--cccceeEEEeecCCCCCccH--HH---HHHHHHHhCCceEEEEe
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTR--VSLKRVCLLIDTKWGVKPRD--HE---LISLMERSQTKYQVVLT  104 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~vi~vid~~~~~~~~~--~~---~~~~l~~~~~~~ivv~n  104 (162)
                      .+.++||||+-+..      - +...+...+..+  ...-++++++|+...-....  ..   .+..+.+.+.|++.|+|
T Consensus        92 ~y~l~DtPGQiElf------~-~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvls  164 (238)
T PF03029_consen   92 DYLLFDTPGQIELF------T-HSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLS  164 (238)
T ss_dssp             SEEEEE--SSHHHH------H-HSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE-
T ss_pred             cEEEEeCCCCEEEE------E-echhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeee
Confidence            59999999992221      1 111122222222  23468899999864322111  11   11233446899999999


Q ss_pred             ccCCCCcHHHHHHHHH---------------------HHHHHHhcCCCCC-CeEEeecCCCCCHHHHHHHHHHhhhh
Q 031293          105 KTDTVFPIDVARRAMQ---------------------IEESLKANNSLVQ-PVMMVSSKSGAGIRSLRTVLSKIARF  159 (162)
Q Consensus       105 K~Dl~~~~~~~~~~~~---------------------~~~~~~~~~~~~~-~i~~~Sa~~~~g~~~l~~~i~~~~~~  159 (162)
                      |+|++++. .+..+++                     +.+.+...+  .. +++++|+.+++|+++|+..+.+++++
T Consensus       165 K~Dl~~~~-~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~--~~~~f~pls~~~~~~~~~L~~~id~a~~y  238 (238)
T PF03029_consen  165 KIDLLSKY-LEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFG--LVIRFIPLSSKDGEGMEELLAAIDKANQY  238 (238)
T ss_dssp             -GGGS-HH-HHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCS--SS---EE-BTTTTTTHHHHHHHHHHHHH-
T ss_pred             ccCcccch-hHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcC--CCceEEEEECCChHHHHHHHHHHHHHhcC
Confidence            99999733 2111111                     111111122  24 89999999999999999999988764

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.08  E-value=1.1e-09  Score=69.58  Aligned_cols=108  Identities=14%  Similarity=0.116  Sum_probs=72.8

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHH-HHHHHHH---hCCceEEEEeccC
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHE-LISLMER---SQTKYQVVLTKTD  107 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~-~~~~l~~---~~~~~ivv~nK~D  107 (162)
                      ++.++||+|.          |.+..+...|+++   +++.+++.|....-+-...+ +...+..   .+.|+|+|.||+|
T Consensus        71 klQiwDTagq----------EryrtiTTayyRg---amgfiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCD  137 (193)
T KOG0093|consen   71 KLQIWDTAGQ----------ERYRTITTAYYRG---AMGFILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCD  137 (193)
T ss_pred             EEEEEecccc----------hhhhHHHHHHhhc---cceEEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccC
Confidence            5889999999          4445555555554   48999999986532222222 2222222   3689999999999


Q ss_pred             CCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293          108 TVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  157 (162)
Q Consensus       108 l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~  157 (162)
                      +-++..+..  +..+.+..+.+   +.++.+||+.+-++.++++.+...+
T Consensus       138 md~eRvis~--e~g~~l~~~LG---fefFEtSaK~NinVk~~Fe~lv~~I  182 (193)
T KOG0093|consen  138 MDSERVISH--ERGRQLADQLG---FEFFETSAKENINVKQVFERLVDII  182 (193)
T ss_pred             CccceeeeH--HHHHHHHHHhC---hHHhhhcccccccHHHHHHHHHHHH
Confidence            976554322  34444455454   3899999999999999999887654

>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.08  E-value=6.2e-10  Score=74.76  Aligned_cols=107  Identities=10%  Similarity=0.031  Sum_probs=71.2

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCc-cHHHHHHHHHHh---CCceEEEEeccC
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKP-RDHELISLMERS---QTKYQVVLTKTD  107 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~-~~~~~~~~l~~~---~~~~ivv~nK~D  107 (162)
                      +..||||+|+          ++++.....|.++.   .++++|.|-....+- .-..|+..|+..   ++++++|.||+|
T Consensus        64 kaqIWDTAGQ----------ERyrAitSaYYrgA---vGAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~D  130 (222)
T KOG0087|consen   64 KAQIWDTAGQ----------ERYRAITSAYYRGA---VGALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSD  130 (222)
T ss_pred             EEeeecccch----------hhhccccchhhccc---ceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchh
Confidence            3689999999          55555566666555   677888886543222 223456666543   588999999999


Q ss_pred             CCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHh
Q 031293          108 TVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKI  156 (162)
Q Consensus       108 l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~  156 (162)
                      |.+...+..  +..+......+   ..++.+||+.+.++++.+..+...
T Consensus       131 L~~lraV~t--e~~k~~Ae~~~---l~f~EtSAl~~tNVe~aF~~~l~~  174 (222)
T KOG0087|consen  131 LNHLRAVPT--EDGKAFAEKEG---LFFLETSALDATNVEKAFERVLTE  174 (222)
T ss_pred             hhhccccch--hhhHhHHHhcC---ceEEEecccccccHHHHHHHHHHH
Confidence            975332221  23333333333   489999999999999998777543

>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]

Probab=99.06  E-value=6.7e-10  Score=71.46  Aligned_cols=106  Identities=17%  Similarity=0.150  Sum_probs=67.3

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCC--CCccHHHHHHHHHH---hCCceEEEEecc
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG--VKPRDHELISLMER---SQTKYQVVLTKT  106 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~--~~~~~~~~~~~l~~---~~~~~ivv~nK~  106 (162)
                      ++.||||+|+          ++++.+-.-|.++.   +++++|.|..+.  +...-. +...++.   ..+-+++|.||+
T Consensus        63 ~L~IWDTAGQ----------ErfHALGPIYYRgS---nGalLVyDITDrdSFqKVKn-WV~Elr~mlGnei~l~IVGNKi  128 (218)
T KOG0088|consen   63 DLHIWDTAGQ----------ERFHALGPIYYRGS---NGALLVYDITDRDSFQKVKN-WVLELRTMLGNEIELLIVGNKI  128 (218)
T ss_pred             eeeeeeccch----------HhhhccCceEEeCC---CceEEEEeccchHHHHHHHH-HHHHHHHHhCCeeEEEEecCcc
Confidence            4889999999          44444444455554   777888776542  222122 2222322   346789999999


Q ss_pred             CCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHh
Q 031293          107 DTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKI  156 (162)
Q Consensus       107 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~  156 (162)
                      |+-.  +.+-..+.........+.   .++.+||+.+.|+.++|+.+...
T Consensus       129 DLEe--eR~Vt~qeAe~YAesvGA---~y~eTSAk~N~Gi~elFe~Lt~~  173 (218)
T KOG0088|consen  129 DLEE--ERQVTRQEAEAYAESVGA---LYMETSAKDNVGISELFESLTAK  173 (218)
T ss_pred             cHHH--hhhhhHHHHHHHHHhhch---hheecccccccCHHHHHHHHHHH
Confidence            9843  332223334444444443   78999999999999999988654

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=99.05  E-value=4.4e-09  Score=72.66  Aligned_cols=150  Identities=15%  Similarity=0.211  Sum_probs=85.9

Q ss_pred             ChhcccCCCCceecc-CCCCcceEEEEE--Ee-CCceEEEcCCCCcccccCHHHHHHHHHHHHHH-HhcCcccceeEEEe
Q 031293            1 MLNALTRQWGVVRTS-DKPGLTQTINFF--KL-GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY-VSTRVSLKRVCLLI   75 (162)
Q Consensus         1 lin~L~~~~~~~~~~-~~~g~t~~~~~~--~~-~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~vi~vi   75 (162)
                      ++|.|+|.+ ....+ ...+.|+.....  .. +..++++||||+++......  + ....+.++ .....+++++++|+
T Consensus        16 ~~N~ilg~~-~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~--~-~~~~i~~~l~~~~~g~ha~llVi   91 (212)
T PF04548_consen   16 LGNSILGKE-VFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDE--E-IIREIKRCLSLCSPGPHAFLLVI   91 (212)
T ss_dssp             HHHHHHTSS--SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEHH--H-HHHHHHHHHHHTTT-ESEEEEEE
T ss_pred             HHHHHhccc-ceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccHH--H-HHHHHHHHHHhccCCCeEEEEEE
Confidence            468899984 44433 223344433322  23 66799999999976643221  1 12223333 23456789999999


Q ss_pred             ecCCCCCccHHHHHHHHHHh-C----CceEEEEeccCCCCcHHHHHHHH-----HHHHHHHhcCCCCCCeEEeecC----
Q 031293           76 DTKWGVKPRDHELISLMERS-Q----TKYQVVLTKTDTVFPIDVARRAM-----QIEESLKANNSLVQPVMMVSSK----  141 (162)
Q Consensus        76 d~~~~~~~~~~~~~~~l~~~-~----~~~ivv~nK~Dl~~~~~~~~~~~-----~~~~~~~~~~~~~~~i~~~Sa~----  141 (162)
                      +.. .++..+...++.+... +    ..+++|+|..|......++..++     .+++.+...+.   .++.++..    
T Consensus        92 ~~~-r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~---R~~~f~n~~~~~  167 (212)
T PF04548_consen   92 PLG-RFTEEDREVLELLQEIFGEEIWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGG---RYHVFNNKTKDK  167 (212)
T ss_dssp             ETT-B-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTT---CEEECCTTHHHH
T ss_pred             ecC-cchHHHHHHHHHHHHHccHHHHhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCC---EEEEEeccccch
Confidence            988 7787777777766542 2    34899999999876554433332     35555665554   66666655    


Q ss_pred             --CCCCHHHHHHHHHHhhh
Q 031293          142 --SGAGIRSLRTVLSKIAR  158 (162)
Q Consensus       142 --~~~g~~~l~~~i~~~~~  158 (162)
                        ...-+.+|+..|.+..+
T Consensus       168 ~~~~~qv~~Ll~~ie~mv~  186 (212)
T PF04548_consen  168 EKDESQVSELLEKIEEMVQ  186 (212)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHH
Confidence              22457788888877654

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>smart00053 DYNc Dynamin, GTPase

Probab=99.03  E-value=8e-09  Score=72.31  Aligned_cols=80  Identities=18%  Similarity=0.250  Sum_probs=61.8

Q ss_pred             CceEEEcCCCCcccc---cCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHHHHHHhCCceEEEEecc
Q 031293           31 TKLCLVDLPGYGFAY---AKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERSQTKYQVVLTKT  106 (162)
Q Consensus        31 ~~~~ivDtpG~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~~l~~~~~~~ivv~nK~  106 (162)
                      ..++++||||+....   .+......+..++..|+...+  +++++|+|++.++...+ .++.+.++..+.|.++|+||+
T Consensus       125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~--~IIL~Vvda~~d~~~~d~l~ia~~ld~~~~rti~ViTK~  202 (240)
T smart00053      125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEE--CLILAVTPANVDLANSDALKLAKEVDPQGERTIGVITKL  202 (240)
T ss_pred             CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCcc--CeEEEEEECCCCCCchhHHHHHHHHHHcCCcEEEEEECC
Confidence            469999999994331   124455667777888877543  69999999998887766 578888888899999999999


Q ss_pred             CCCCcH
Q 031293          107 DTVFPI  112 (162)
Q Consensus       107 Dl~~~~  112 (162)
                      |..++.
T Consensus       203 D~~~~~  208 (240)
T smart00053      203 DLMDEG  208 (240)
T ss_pred             CCCCcc
Confidence            998644

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []

Probab=99.03  E-value=5.2e-09  Score=75.05  Aligned_cols=98  Identities=23%  Similarity=0.434  Sum_probs=65.5

Q ss_pred             ceEEEcCCCCcccccC----HH----HHHHHHHHHHHHHhcC------cccceeEEEeecC-CCCCccHHHHHHHHHHhC
Q 031293           32 KLCLVDLPGYGFAYAK----EE----VKDAWEELVKEYVSTR------VSLKRVCLLIDTK-WGVKPRDHELISLMERSQ   96 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~----~~----~~~~~~~~~~~~~~~~------~~~~~vi~vid~~-~~~~~~~~~~~~~l~~~~   96 (162)
                      +++++||||+|+..-.    ..    ..+.+..++.+-..-.      ..+|++++.+++. .++...|.+.++.|.. .
T Consensus        64 ~LtiiDTpGfGd~i~n~~~~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~Ls~-~  142 (281)
T PF00735_consen   64 NLTIIDTPGFGDNIDNSDCWEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRLSK-R  142 (281)
T ss_dssp             EEEEEEEC-CSSSSTHCHHHHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHHTT-T
T ss_pred             EEEEEeCCCccccccchhhhHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHhcc-c
Confidence            5899999999976211    11    2233333333322211      3579999999985 4677888877777764 4


Q ss_pred             CceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCC
Q 031293           97 TKYQVVLTKTDTVFPIDVARRAMQIEESLKANNS  130 (162)
Q Consensus        97 ~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~  130 (162)
                      +++|-|+.|+|.+...+.....+.+.+.+..++.
T Consensus       143 vNvIPvIaKaD~lt~~el~~~k~~i~~~l~~~~I  176 (281)
T PF00735_consen  143 VNVIPVIAKADTLTPEELQAFKQRIREDLEENNI  176 (281)
T ss_dssp             SEEEEEESTGGGS-HHHHHHHHHHHHHHHHHTT-
T ss_pred             ccEEeEEecccccCHHHHHHHHHHHHHHHHHcCc
Confidence            7899999999999999999888999998887765

Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=99.03  E-value=5.3e-09  Score=77.65  Aligned_cols=100  Identities=18%  Similarity=0.117  Sum_probs=66.4

Q ss_pred             HHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcHH-HHHHHHHHHHHHHhcCC
Q 031293           52 DAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPID-VARRAMQIEESLKANNS  130 (162)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~  130 (162)
                      +.+..++..+..   .++++++|+|+.+.......++.+.+.  +.|+++|+||+|+.++.. .+...+++++.+...+.
T Consensus        51 e~f~~~l~~~~~---~~~~Il~VvD~~d~~~s~~~~l~~~~~--~~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~~g~  125 (360)
T TIGR03597        51 DDFLNLLNSLGD---SNALIVYVVDIFDFEGSLIPELKRFVG--GNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKELGL  125 (360)
T ss_pred             HHHHHHHhhccc---CCcEEEEEEECcCCCCCccHHHHHHhC--CCCEEEEEEchhhCCCCCCHHHHHHHHHHHHHHcCC
Confidence            344555555533   348999999987655444444444432  689999999999975432 23333344444554443


Q ss_pred             CCCCeEEeecCCCCCHHHHHHHHHHh
Q 031293          131 LVQPVMMVSSKSGAGIRSLRTVLSKI  156 (162)
Q Consensus       131 ~~~~i~~~Sa~~~~g~~~l~~~i~~~  156 (162)
                      ....++.+||++|.|++++++.|.+.
T Consensus       126 ~~~~i~~vSAk~g~gv~eL~~~l~~~  151 (360)
T TIGR03597       126 KPVDIILVSAKKGNGIDELLDKIKKA  151 (360)
T ss_pred             CcCcEEEecCCCCCCHHHHHHHHHHH
Confidence            33469999999999999999999754

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=99.02  E-value=6.8e-10  Score=74.19  Aligned_cols=86  Identities=17%  Similarity=0.237  Sum_probs=46.4

Q ss_pred             CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHH----H-----hCCceE
Q 031293           30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLME----R-----SQTKYQ  100 (162)
Q Consensus        30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~----~-----~~~~~i  100 (162)
                      +..+.+||+|||+...         ..++.. +.....+.+++||+|+.. ....-.+..++|.    .     ..+|++
T Consensus        48 ~~~~~lvD~PGH~rlr---------~~~~~~-~~~~~~~k~IIfvvDSs~-~~~~~~~~Ae~Ly~iL~~~~~~~~~~piL  116 (181)
T PF09439_consen   48 GKKLRLVDIPGHPRLR---------SKLLDE-LKYLSNAKGIIFVVDSST-DQKELRDVAEYLYDILSDTEVQKNKPPIL  116 (181)
T ss_dssp             GTCECEEEETT-HCCC---------HHHHHH-HHHHGGEEEEEEEEETTT-HHHHHHHHHHHHHHHHHHHHCCTT--EEE
T ss_pred             CCEEEEEECCCcHHHH---------HHHHHh-hhchhhCCEEEEEEeCcc-chhhHHHHHHHHHHHHHhhhhccCCCCEE
Confidence            4469999999994432         122222 122455799999999974 1111122222222    1     357899


Q ss_pred             EEEeccCCCCcHHHHHHHHHHHHHHH
Q 031293          101 VVLTKTDTVFPIDVARRAMQIEESLK  126 (162)
Q Consensus       101 vv~nK~Dl~~~~~~~~~~~~~~~~~~  126 (162)
                      |+.||.|+........+...+++++.
T Consensus       117 IacNK~Dl~~A~~~~~Ik~~LE~Ei~  142 (181)
T PF09439_consen  117 IACNKQDLFTAKPPKKIKKLLEKEID  142 (181)
T ss_dssp             EEEE-TTSTT---HHHHHHHHHHHHH
T ss_pred             EEEeCccccccCCHHHHHHHHHHHHH
Confidence            99999999865544555555555543

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>PRK09602 translation-associated GTPase; Reviewed

Probab=99.00  E-value=6.5e-09  Score=77.89  Aligned_cols=70  Identities=17%  Similarity=0.109  Sum_probs=47.1

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEE-----------------------e----CCceEEEcCCCCcccccCHHHHHH
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFK-----------------------L----GTKLCLVDLPGYGFAYAKEEVKDA   53 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~-----------------------~----~~~~~ivDtpG~~~~~~~~~~~~~   53 (162)
                      |||+|++.  .+.++++|++|.+.+...                       .    ..++.++|+||......      .
T Consensus        17 lfn~Lt~~--~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aGl~~ga~------~   88 (396)
T PRK09602         17 FFNAATLA--DVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAGLVPGAH------E   88 (396)
T ss_pred             HHHHHhCC--cccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCCcCCCcc------c
Confidence            68999998  356789999997666421                       0    12377999999833210      0


Q ss_pred             HHHHHHHHHhcCcccceeEEEeecC
Q 031293           54 WEELVKEYVSTRVSLKRVCLLIDTK   78 (162)
Q Consensus        54 ~~~~~~~~~~~~~~~~~vi~vid~~   78 (162)
                      ...+-..++...+.+|++++|+|+.
T Consensus        89 g~glg~~fL~~ir~ad~ll~Vvd~~  113 (396)
T PRK09602         89 GRGLGNQFLDDLRQADALIHVVDAS  113 (396)
T ss_pred             hhhHHHHHHHHHHHCCEEEEEEeCC
Confidence            1233445555667779999999986

>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.99  E-value=1.5e-08  Score=65.35  Aligned_cols=106  Identities=15%  Similarity=0.147  Sum_probs=66.9

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCC--CCccHHHHHHHHHHh---CCc-eEEEEec
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG--VKPRDHELISLMERS---QTK-YQVVLTK  105 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~--~~~~~~~~~~~l~~~---~~~-~ivv~nK  105 (162)
                      .+.+|||+|+          +++..+...+.+..   -+.+++.|-...  +-. ...++..|+..   .-| ++++.||
T Consensus        68 hLQlWDTAGQ----------ERFRSLTTAFfRDA---MGFlLiFDlT~eqSFLn-vrnWlSQL~~hAYcE~PDivlcGNK  133 (219)
T KOG0081|consen   68 HLQLWDTAGQ----------ERFRSLTTAFFRDA---MGFLLIFDLTSEQSFLN-VRNWLSQLQTHAYCENPDIVLCGNK  133 (219)
T ss_pred             EEeeeccccH----------HHHHHHHHHHHHhh---ccceEEEeccchHHHHH-HHHHHHHHHHhhccCCCCEEEEcCc
Confidence            3789999999          55555555555543   355666665432  211 12233333321   234 9999999


Q ss_pred             cCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHh
Q 031293          106 TDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKI  156 (162)
Q Consensus       106 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~  156 (162)
                      +|+.+...+.+  ....+....++.   |++.+||-+|.++++..+.+..+
T Consensus       134 ~DL~~~R~Vs~--~qa~~La~kygl---PYfETSA~tg~Nv~kave~Lldl  179 (219)
T KOG0081|consen  134 ADLEDQRVVSE--DQAAALADKYGL---PYFETSACTGTNVEKAVELLLDL  179 (219)
T ss_pred             cchhhhhhhhH--HHHHHHHHHhCC---CeeeeccccCcCHHHHHHHHHHH
Confidence            99986665543  334455666665   99999999999988876665543

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=98.98  E-value=2e-08  Score=69.44  Aligned_cols=106  Identities=15%  Similarity=0.074  Sum_probs=65.3

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHH-HHHHHHHH--hCCceEEEEeccCC
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDH-ELISLMER--SQTKYQVVLTKTDT  108 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~-~~~~~l~~--~~~~~ivv~nK~Dl  108 (162)
                      .+.++||||.          +.+..+...+..   .+++++++.|..+..+-... .++..+..  .++|++++.||+|+
T Consensus        59 ~i~~~Dt~g~----------~~~~~~~~~~~~---~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl  125 (215)
T PTZ00132         59 CFNVWDTAGQ----------EKFGGLRDGYYI---KGQCAIIMFDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDV  125 (215)
T ss_pred             EEEEEECCCc----------hhhhhhhHHHhc---cCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccC
Confidence            5889999997          122333333433   34889999998764322111 22222221  25889999999998


Q ss_pred             CCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293          109 VFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  157 (162)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~  157 (162)
                      .+.....+..    ......+   ..++.+||++|.|+++.+.+|.+.+
T Consensus       126 ~~~~~~~~~~----~~~~~~~---~~~~e~Sa~~~~~v~~~f~~ia~~l  167 (215)
T PTZ00132        126 KDRQVKARQI----TFHRKKN---LQYYDISAKSNYNFEKPFLWLARRL  167 (215)
T ss_pred             ccccCCHHHH----HHHHHcC---CEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            6432111111    1222222   4789999999999999999988654

>PRK12289 GTPase RsgA; Reviewed

Probab=98.98  E-value=7.3e-09  Score=76.41  Aligned_cols=84  Identities=17%  Similarity=0.264  Sum_probs=58.3

Q ss_pred             CcccceeEEEeecCCCC-CccH-HHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCC
Q 031293           65 RVSLKRVCLLIDTKWGV-KPRD-HELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKS  142 (162)
Q Consensus        65 ~~~~~~vi~vid~~~~~-~~~~-~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~  142 (162)
                      ..++|.+++|+|..++. .... ..++..+...++|+++|+||+|++++.+...    +.+.+...+   .+++++||.+
T Consensus        87 ~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~~~ip~ILVlNK~DLv~~~~~~~----~~~~~~~~g---~~v~~iSA~t  159 (352)
T PRK12289         87 VANADQILLVFALAEPPLDPWQLSRFLVKAESTGLEIVLCLNKADLVSPTEQQQ----WQDRLQQWG---YQPLFISVET  159 (352)
T ss_pred             hhcCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEchhcCChHHHHH----HHHHHHhcC---CeEEEEEcCC
Confidence            35579999999987543 2211 2344444556899999999999986544332    223333333   3789999999


Q ss_pred             CCCHHHHHHHHHH
Q 031293          143 GAGIRSLRTVLSK  155 (162)
Q Consensus       143 ~~g~~~l~~~i~~  155 (162)
                      +.|+++|+..+..
T Consensus       160 g~GI~eL~~~L~~  172 (352)
T PRK12289        160 GIGLEALLEQLRN  172 (352)
T ss_pred             CCCHHHHhhhhcc
Confidence            9999999998865

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=98.96  E-value=1e-08  Score=72.29  Aligned_cols=85  Identities=18%  Similarity=0.269  Sum_probs=57.9

Q ss_pred             CcccceeEEEeecCCCC-CccH-HHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCC
Q 031293           65 RVSLKRVCLLIDTKWGV-KPRD-HELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKS  142 (162)
Q Consensus        65 ~~~~~~vi~vid~~~~~-~~~~-~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~  142 (162)
                      .+++|.+++|.|..++. +... ..++..+...++|+++|+||+|+.++.....  +.. +.....+   .+++.+||++
T Consensus        34 ~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~~~i~~vIV~NK~DL~~~~~~~~--~~~-~~~~~~g---~~v~~~SAkt  107 (245)
T TIGR00157        34 VANIDQIVIVSSAVLPELSLNQLDRFLVVAEAQNIEPIIVLNKIDLLDDEDMEK--EQL-DIYRNIG---YQVLMTSSKN  107 (245)
T ss_pred             cccCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECcccCCCHHHHH--HHH-HHHHHCC---CeEEEEecCC
Confidence            34569999999988644 2222 2234445556899999999999976544331  112 2222232   4899999999


Q ss_pred             CCCHHHHHHHHHH
Q 031293          143 GAGIRSLRTVLSK  155 (162)
Q Consensus       143 ~~g~~~l~~~i~~  155 (162)
                      |.|++++++.+.+
T Consensus       108 g~gi~eLf~~l~~  120 (245)
T TIGR00157       108 QDGLKELIEALQN  120 (245)
T ss_pred             chhHHHHHhhhcC
Confidence            9999999998864

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.96  E-value=1.3e-08  Score=74.42  Aligned_cols=104  Identities=19%  Similarity=0.346  Sum_probs=72.3

Q ss_pred             ceEEEcCCCCccccc--------CHHHHHHHHHHHHHHHhcC------cccceeEEEeecC-CCCCccHHHHHHHHHHhC
Q 031293           32 KLCLVDLPGYGFAYA--------KEEVKDAWEELVKEYVSTR------VSLKRVCLLIDTK-WGVKPRDHELISLMERSQ   96 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~--------~~~~~~~~~~~~~~~~~~~------~~~~~vi~vid~~-~~~~~~~~~~~~~l~~~~   96 (162)
                      +++++||||+|+..-        ..-..+.+..++.+-.+-.      .+++++++.|.+. .++.+.|.+.++.+.. .
T Consensus        80 ~LtvidtPGfGD~vdns~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk~l~~-~  158 (366)
T KOG2655|consen   80 NLTVIDTPGFGDAVDNSNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFMKKLSK-K  158 (366)
T ss_pred             eeEEeccCCCcccccccccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHHHHHhc-c
Confidence            589999999999721        1112333343333321111      2578888888875 4688888888777763 6


Q ss_pred             CceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEee
Q 031293           97 TKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVS  139 (162)
Q Consensus        97 ~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S  139 (162)
                      +.+|-|+.|+|.+.+.+.....+.+++.+..+..   +++...
T Consensus       159 vNiIPVI~KaD~lT~~El~~~K~~I~~~i~~~nI---~vf~fp  198 (366)
T KOG2655|consen  159 VNLIPVIAKADTLTKDELNQFKKRIRQDIEEHNI---KVFDFP  198 (366)
T ss_pred             ccccceeeccccCCHHHHHHHHHHHHHHHHHcCc---ceecCC
Confidence            7789999999999999999888999888887654   444443

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=98.95  E-value=4.6e-09  Score=65.08  Aligned_cols=105  Identities=16%  Similarity=0.181  Sum_probs=71.9

Q ss_pred             EEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcHH
Q 031293           34 CLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPID  113 (162)
Q Consensus        34 ~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~  113 (162)
                      ..+||||-...         ........+.....+|+++++..+.++.+....-++..   ...|+|-|++|+|+.+..+
T Consensus        40 ~~IDTPGEy~~---------~~~~Y~aL~tt~~dadvi~~v~~and~~s~f~p~f~~~---~~k~vIgvVTK~DLaed~d  107 (148)
T COG4917          40 GDIDTPGEYFE---------HPRWYHALITTLQDADVIIYVHAANDPESRFPPGFLDI---GVKKVIGVVTKADLAEDAD  107 (148)
T ss_pred             cccCCchhhhh---------hhHHHHHHHHHhhccceeeeeecccCccccCCcccccc---cccceEEEEecccccchHh
Confidence            47899996221         02334444444556799999988887765544444332   3567999999999986555


Q ss_pred             HHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHh
Q 031293          114 VARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKI  156 (162)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~  156 (162)
                      ++....+    +.+-+.  .+||.+|+.+..|+++|++.+...
T Consensus       108 I~~~~~~----L~eaGa--~~IF~~s~~d~~gv~~l~~~L~~~  144 (148)
T COG4917         108 ISLVKRW----LREAGA--EPIFETSAVDNQGVEELVDYLASL  144 (148)
T ss_pred             HHHHHHH----HHHcCC--cceEEEeccCcccHHHHHHHHHhh
Confidence            5544333    333443  599999999999999999999764

>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.93  E-value=4.5e-08  Score=62.54  Aligned_cols=106  Identities=17%  Similarity=0.164  Sum_probs=70.9

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCc-cHHHHHHHHHHh---CCceEEEEeccC
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKP-RDHELISLMERS---QTKYQVVLTKTD  107 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~-~~~~~~~~l~~~---~~~~ivv~nK~D  107 (162)
                      ++.+|||+|+          +++..+...|.+..   +.++++.|.+...+- --.+++..+...   ++--|+|.||+|
T Consensus        57 klqiwdtagq----------erfrsitqsyyrsa---halilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d  123 (213)
T KOG0095|consen   57 KLQIWDTAGQ----------ERFRSITQSYYRSA---HALILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKID  123 (213)
T ss_pred             EEEEeeccch----------HHHHHHHHHHhhhc---ceEEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccc
Confidence            5899999999          66677788887655   778888786543211 123455555433   344699999999


Q ss_pred             CCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHH
Q 031293          108 TVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSK  155 (162)
Q Consensus       108 l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~  155 (162)
                      +.++.++.+.+   -+.+.....  .-+..+||+..+++++|+..+.-
T Consensus       124 ~~drrevp~qi---geefs~~qd--myfletsakea~nve~lf~~~a~  166 (213)
T KOG0095|consen  124 LADRREVPQQI---GEEFSEAQD--MYFLETSAKEADNVEKLFLDLAC  166 (213)
T ss_pred             hhhhhhhhHHH---HHHHHHhhh--hhhhhhcccchhhHHHHHHHHHH
Confidence            98776665432   222222111  35678999999999999987753

>PTZ00258 GTP-binding protein; Provisional

Probab=98.93  E-value=2.5e-08  Score=74.25  Aligned_cols=70  Identities=20%  Similarity=0.217  Sum_probs=48.7

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEe--------------------CCceEEEcCCCCcccccCHHHHHHHHHHHHH
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKL--------------------GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE   60 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~--------------------~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~   60 (162)
                      |||+|++.  .+.++++|++|++.+....                    ..++.++||||+.......      ..+..+
T Consensus        37 LfnaLt~~--~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ga~~g------~gLg~~  108 (390)
T PTZ00258         37 TFNALCKQ--QVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKGASEG------EGLGNA  108 (390)
T ss_pred             HHHHHhcC--cccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcCCcch------hHHHHH
Confidence            68999988  4689999999987665322                    1248999999984331110      223345


Q ss_pred             HHhcCcccceeEEEeecC
Q 031293           61 YVSTRVSLKRVCLLIDTK   78 (162)
Q Consensus        61 ~~~~~~~~~~vi~vid~~   78 (162)
                      ++...+.+|++++|+|+.
T Consensus       109 fL~~Ir~aD~il~VVd~f  126 (390)
T PTZ00258        109 FLSHIRAVDGIYHVVRAF  126 (390)
T ss_pred             HHHHHHHCCEEEEEEeCC
Confidence            555567789999999984

>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.92  E-value=8.1e-09  Score=66.15  Aligned_cols=105  Identities=12%  Similarity=0.135  Sum_probs=66.7

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCC--CCCccHHHHHH---HHHHhCCceEEEEecc
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW--GVKPRDHELIS---LMERSQTKYQVVLTKT  106 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~--~~~~~~~~~~~---~l~~~~~~~ivv~nK~  106 (162)
                      ++.+|||+|+          +++....+.|.++..   +.++|.|...  .+..... ++.   .+...++-++++.||.
T Consensus        59 KLQIWDTAGQ----------ErFRSVtRsYYRGAA---GAlLVYD~TsrdsfnaLtn-WL~DaR~lAs~nIvviL~GnKk  124 (214)
T KOG0086|consen   59 KLQIWDTAGQ----------ERFRSVTRSYYRGAA---GALLVYDITSRDSFNALTN-WLTDARTLASPNIVVILCGNKK  124 (214)
T ss_pred             EEEEeecccH----------HHHHHHHHHHhcccc---ceEEEEeccchhhHHHHHH-HHHHHHhhCCCcEEEEEeCChh
Confidence            4889999999          677788888888774   5566666543  3322222 222   2233345588899999


Q ss_pred             CCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHH
Q 031293          107 DTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSK  155 (162)
Q Consensus       107 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~  155 (162)
                      |+-...++.-  .....++.+.   ......+||++|+++++.+-...+
T Consensus       125 DL~~~R~Vtf--lEAs~FaqEn---el~flETSa~TGeNVEEaFl~c~~  168 (214)
T KOG0086|consen  125 DLDPEREVTF--LEASRFAQEN---ELMFLETSALTGENVEEAFLKCAR  168 (214)
T ss_pred             hcChhhhhhH--HHHHhhhccc---ceeeeeecccccccHHHHHHHHHH
Confidence            9965444321  1222333332   247888999999999987766544

>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]

Probab=98.92  E-value=7e-08  Score=70.26  Aligned_cols=125  Identities=22%  Similarity=0.343  Sum_probs=81.5

Q ss_pred             ceEEEcCCCCcccc---c-CHHH----HHHHHHHHHHHHhcC-------cccceeEEEeecC-CCCCccHHHHHHHHHHh
Q 031293           32 KLCLVDLPGYGFAY---A-KEEV----KDAWEELVKEYVSTR-------VSLKRVCLLIDTK-WGVKPRDHELISLMERS   95 (162)
Q Consensus        32 ~~~ivDtpG~~~~~---~-~~~~----~~~~~~~~~~~~~~~-------~~~~~vi~vid~~-~~~~~~~~~~~~~l~~~   95 (162)
                      +++++||||+|+..   . -...    .+.+..++.+-.+-.       .+++++++.+.+. .++...+.+.+..+.. 
T Consensus        83 ~l~vIDtpGfGD~idNs~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~ls~-  161 (373)
T COG5019          83 NLTVIDTPGFGDFIDNSKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKRLSK-  161 (373)
T ss_pred             EEEEeccCCccccccccccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHHHHhc-
Confidence            58999999999872   1 1222    233333333322211       3468888888864 5788888888777763 


Q ss_pred             CCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeE-EeecCCC-CCHHHHHHHHHHhhhhh
Q 031293           96 QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVM-MVSSKSG-AGIRSLRTVLSKIARFA  160 (162)
Q Consensus        96 ~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~Sa~~~-~g~~~l~~~i~~~~~~~  160 (162)
                      .+.+|-|+.|+|.....+.....+.+++.+..+..   ++| |.+.-.. .-.-+.-..+.++++|+
T Consensus       162 ~vNlIPVI~KaD~lT~~El~~~K~~I~~~i~~~nI---~vf~pyd~e~~~~e~~e~~~~l~~~~PFA  225 (373)
T COG5019         162 RVNLIPVIAKADTLTDDELAEFKERIREDLEQYNI---PVFDPYDPEDDEDESLEENQDLRSLIPFA  225 (373)
T ss_pred             ccCeeeeeeccccCCHHHHHHHHHHHHHHHHHhCC---ceeCCCCccccchhhHHHHHHHhhcCCeE
Confidence            56789999999999999999999999988887765   444 3332221 12334455566666654

>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.92  E-value=1.4e-08  Score=64.29  Aligned_cols=104  Identities=14%  Similarity=0.142  Sum_probs=64.9

Q ss_pred             CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHHHHHHhCCc---eEEEEec
Q 031293           30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERSQTK---YQVVLTK  105 (162)
Q Consensus        30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~~l~~~~~~---~ivv~nK  105 (162)
                      +-++.+|||+|+          +++....+.|.++..   +.+.|.|....-+-.. ..++...+....|   ++++.||
T Consensus        59 kiklqiwdtagq----------erfravtrsyyrgaa---galmvyditrrstynhlsswl~dar~ltnpnt~i~lignk  125 (215)
T KOG0097|consen   59 KIKLQIWDTAGQ----------ERFRAVTRSYYRGAA---GALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNK  125 (215)
T ss_pred             EEEEEEeecccH----------HHHHHHHHHHhcccc---ceeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecch
Confidence            446899999999          666777888887765   4455555433211111 1233333333334   7888999


Q ss_pred             cCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHH
Q 031293          106 TDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRT  151 (162)
Q Consensus       106 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~  151 (162)
                      .|+-+..++.  .+..+++..+++.   .+..+||++|+++++.+-
T Consensus       126 adle~qrdv~--yeeak~faeengl---~fle~saktg~nvedafl  166 (215)
T KOG0097|consen  126 ADLESQRDVT--YEEAKEFAEENGL---MFLEASAKTGQNVEDAFL  166 (215)
T ss_pred             hhhhhcccCc--HHHHHHHHhhcCe---EEEEecccccCcHHHHHH
Confidence            9996544322  2344445555554   889999999999987553

>PRK00098 GTPase RsgA; Reviewed

Probab=98.92  E-value=1.1e-08  Score=74.16  Aligned_cols=84  Identities=23%  Similarity=0.301  Sum_probs=57.7

Q ss_pred             cccceeEEEeecCCCCCccH--HHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCC
Q 031293           66 VSLKRVCLLIDTKWGVKPRD--HELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSG  143 (162)
Q Consensus        66 ~~~~~vi~vid~~~~~~~~~--~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~  143 (162)
                      .++|.+++|+|+.++.....  ..++..+...++|+++|+||+|+.+....   .+.+.+.....+   .+++++||+++
T Consensus        79 aniD~vllV~d~~~p~~~~~~idr~L~~~~~~~ip~iIVlNK~DL~~~~~~---~~~~~~~~~~~g---~~v~~vSA~~g  152 (298)
T PRK00098         79 ANVDQAVLVFAAKEPDFSTDLLDRFLVLAEANGIKPIIVLNKIDLLDDLEE---ARELLALYRAIG---YDVLELSAKEG  152 (298)
T ss_pred             ecCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEhHHcCCCHHH---HHHHHHHHHHCC---CeEEEEeCCCC
Confidence            56799999999976532222  23445556678999999999999743321   112222333333   48999999999


Q ss_pred             CCHHHHHHHHHH
Q 031293          144 AGIRSLRTVLSK  155 (162)
Q Consensus       144 ~g~~~l~~~i~~  155 (162)
                      .|+++|++.+..
T Consensus       153 ~gi~~L~~~l~g  164 (298)
T PRK00098        153 EGLDELKPLLAG  164 (298)
T ss_pred             ccHHHHHhhccC
Confidence            999999988754

>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]

Probab=98.89  E-value=6.9e-08  Score=66.63  Aligned_cols=128  Identities=19%  Similarity=0.271  Sum_probs=84.8

Q ss_pred             CceEEEcCCCCcccc------cC--HHHHHHHHHHHHHHHhcC-------cccceeEEEeecC-CCCCccHHHHHHHHHH
Q 031293           31 TKLCLVDLPGYGFAY------AK--EEVKDAWEELVKEYVSTR-------VSLKRVCLLIDTK-WGVKPRDHELISLMER   94 (162)
Q Consensus        31 ~~~~ivDtpG~~~~~------~~--~~~~~~~~~~~~~~~~~~-------~~~~~vi~vid~~-~~~~~~~~~~~~~l~~   94 (162)
                      -+++++||||+|+.-      .+  .-..+.+++++++.+...       ...+|+++.+.+. ..+...|.++++.|.+
T Consensus       104 lkltviDTPGfGDqInN~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrLt~  183 (336)
T KOG1547|consen  104 LKLTVIDTPGFGDQINNDNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRLTE  183 (336)
T ss_pred             EEEEEecCCCcccccCccchhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHHHhh
Confidence            368999999999861      11  123556666666644322       3467887777764 4577888888887764


Q ss_pred             hCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCH-HHHHHHHHHhhhhhcC
Q 031293           95 SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGI-RSLRTVLSKIARFAKV  162 (162)
Q Consensus        95 ~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~-~~l~~~i~~~~~~~k~  162 (162)
                       -+.++-|+-|+|.+.-++.....+.+++.+..++.   .+++--+-...-= ..+-+++.+.++|+.|
T Consensus       184 -vvNvvPVIakaDtlTleEr~~FkqrI~~el~~~~i---~vYPq~~fded~ed~~lN~kvR~~iPFAVV  248 (336)
T KOG1547|consen  184 -VVNVVPVIAKADTLTLEERSAFKQRIRKELEKHGI---DVYPQDSFDEDLEDKTLNDKVRESIPFAVV  248 (336)
T ss_pred             -hheeeeeEeecccccHHHHHHHHHHHHHHHHhcCc---ccccccccccchhHHHHHHHHHhhCCeEEe
Confidence             35678888999998777777888889888888775   5555544433221 2345566666666543

>TIGR02836 spore_IV_A stage IV sporulation protein A

Probab=98.89  E-value=3e-08  Score=73.74  Aligned_cols=132  Identities=17%  Similarity=0.227  Sum_probs=80.8

Q ss_pred             ChhcccCC----CCce-----------eccCCCC---cceEEEEE-----Ee------CCceEEEcCCCCccccc-C-HH
Q 031293            1 MLNALTRQ----WGVV-----------RTSDKPG---LTQTINFF-----KL------GTKLCLVDLPGYGFAYA-K-EE   49 (162)
Q Consensus         1 lin~L~~~----~~~~-----------~~~~~~g---~t~~~~~~-----~~------~~~~~ivDtpG~~~~~~-~-~~   49 (162)
                      |||+++++    + .+           .+++.+|   +|++..+.     .+      .-++.++||+|+..... + .+
T Consensus        33 fIn~fm~q~VlP~-i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~VrlIDcvG~~v~GalG~~r  111 (492)
T TIGR02836        33 FIKKFMELLVLPN-ISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRLVDCVGYTVKGALGYME  111 (492)
T ss_pred             HHHHHHhhhcccc-ccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEEEECCCcccCCCcccee
Confidence            57777777    3 34           6888999   88888771     11      24699999999955421 1 11


Q ss_pred             -----------------HHHHHHHHHHHHHhcCcccceeEEEe-ecC------CCCCccHHHHHHHHHHhCCceEEEEec
Q 031293           50 -----------------VKDAWEELVKEYVSTRVSLKRVCLLI-DTK------WGVKPRDHELISLMERSQTKYQVVLTK  105 (162)
Q Consensus        50 -----------------~~~~~~~~~~~~~~~~~~~~~vi~vi-d~~------~~~~~~~~~~~~~l~~~~~~~ivv~nK  105 (162)
                                       ..+.-+.-.++.+..  .+++.++|. |++      +........+...|++.++|+++++||
T Consensus       112 ~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~d--hstIgivVtTDgsi~dI~Re~y~~aEe~~i~eLk~~~kPfiivlN~  189 (492)
T TIGR02836       112 EDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQE--HSTIGVVVTTDGTITDIPREDYVEAEERVIEELKELNKPFIILLNS  189 (492)
T ss_pred             ccccccccCCcccccCchhhhhhhhHHHHHHh--cCcEEEEEEcCCCccccccccchHHHHHHHHHHHhcCCCEEEEEEC
Confidence                             111111123344431  247777777 774      455666777889999999999999999


Q ss_pred             cCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCC
Q 031293          106 TDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKS  142 (162)
Q Consensus       106 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~  142 (162)
                      .|-..+. ..+..+.+.   ..++   .+++++||.+
T Consensus       190 ~dp~~~e-t~~l~~~l~---eky~---vpvl~v~c~~  219 (492)
T TIGR02836       190 THPYHPE-TEALRQELE---EKYD---VPVLAMDVES  219 (492)
T ss_pred             cCCCCch-hHHHHHHHH---HHhC---CceEEEEHHH
Confidence            9943222 222222222   2222   5888888755

A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.

>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]

Probab=98.89  E-value=2.3e-08  Score=63.79  Aligned_cols=108  Identities=14%  Similarity=0.134  Sum_probs=74.1

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCC-ccHHHHHHHHHHh--CCceEEEEeccCC
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVK-PRDHELISLMERS--QTKYQVVLTKTDT  108 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~-~~~~~~~~~l~~~--~~~~ivv~nK~Dl  108 (162)
                      ++.||||+|.          +++..+...|.++-   +++++|.|...+.+ ..-..+++.++..  ..|-++|.||.|.
T Consensus        58 kLqIwDtAGq----------ErFrtitstyyrgt---hgv~vVYDVTn~ESF~Nv~rWLeei~~ncdsv~~vLVGNK~d~  124 (198)
T KOG0079|consen   58 KLQIWDTAGQ----------ERFRTITSTYYRGT---HGVIVVYDVTNGESFNNVKRWLEEIRNNCDSVPKVLVGNKNDD  124 (198)
T ss_pred             EEEEeecccH----------HHHHHHHHHHccCC---ceEEEEEECcchhhhHhHHHHHHHHHhcCccccceecccCCCC
Confidence            4889999999          66677777777665   77788878654321 1223455666543  3778999999999


Q ss_pred             CCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293          109 VFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  157 (162)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~  157 (162)
                      .++..+..  ++.+.....-+   ...|.+||+...+++..+.-|.+++
T Consensus       125 ~~RrvV~t--~dAr~~A~~mg---ie~FETSaKe~~NvE~mF~cit~qv  168 (198)
T KOG0079|consen  125 PERRVVDT--EDARAFALQMG---IELFETSAKENENVEAMFHCITKQV  168 (198)
T ss_pred             ccceeeeh--HHHHHHHHhcC---chheehhhhhcccchHHHHHHHHHH
Confidence            86554322  23333333333   4889999999999999888887654

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.89  E-value=2.2e-08  Score=72.23  Aligned_cols=84  Identities=23%  Similarity=0.271  Sum_probs=58.3

Q ss_pred             CcccceeEEEeecCCCC-CccH-HHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCC
Q 031293           65 RVSLKRVCLLIDTKWGV-KPRD-HELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKS  142 (162)
Q Consensus        65 ~~~~~~vi~vid~~~~~-~~~~-~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~  142 (162)
                      ..++|.+++|+|+.++. +... ..++..+...++|+++|+||+|+.++.....    ........+   .+++++||++
T Consensus        76 ~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~~ip~iIVlNK~DL~~~~~~~~----~~~~~~~~g---~~v~~vSA~~  148 (287)
T cd01854          76 AANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAAGIEPVIVLTKADLLDDEEEEL----ELVEALALG---YPVLAVSAKT  148 (287)
T ss_pred             EEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEEEHHHCCChHHHHH----HHHHHHhCC---CeEEEEECCC
Confidence            35679999999998765 3222 2345555667899999999999976532211    111122222   4899999999


Q ss_pred             CCCHHHHHHHHHH
Q 031293          143 GAGIRSLRTVLSK  155 (162)
Q Consensus       143 ~~g~~~l~~~i~~  155 (162)
                      +.|+++|+..+..
T Consensus       149 g~gi~~L~~~L~~  161 (287)
T cd01854         149 GEGLDELREYLKG  161 (287)
T ss_pred             CccHHHHHhhhcc
Confidence            9999999988864

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>TIGR00750 lao LAO/AO transport system ATPase

Probab=98.88  E-value=1.2e-07  Score=68.88  Aligned_cols=109  Identities=17%  Similarity=0.175  Sum_probs=63.0

Q ss_pred             CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCC
Q 031293           30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV  109 (162)
Q Consensus        30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~  109 (162)
                      +..+.++||||.|...         ....       ..+|.++++..+..   ..+.+.+.. ...++|.++|+||+|+.
T Consensus       126 g~D~viidT~G~~~~e---------~~i~-------~~aD~i~vv~~~~~---~~el~~~~~-~l~~~~~ivv~NK~Dl~  185 (300)
T TIGR00750       126 GYDVIIVETVGVGQSE---------VDIA-------NMADTFVVVTIPGT---GDDLQGIKA-GLMEIADIYVVNKADGE  185 (300)
T ss_pred             CCCEEEEeCCCCchhh---------hHHH-------HhhceEEEEecCCc---cHHHHHHHH-HHhhhccEEEEEccccc
Confidence            4579999999985321         1111       12377777754432   122222211 12368889999999998


Q ss_pred             CcHHHHHHHHHHHHHHH---hc-CCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293          110 FPIDVARRAMQIEESLK---AN-NSLVQPVMMVSSKSGAGIRSLRTVLSKIAR  158 (162)
Q Consensus       110 ~~~~~~~~~~~~~~~~~---~~-~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~  158 (162)
                      ...........+...+.   .. .....+++++||+++.|+++++++|.+...
T Consensus       186 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~  238 (300)
T TIGR00750       186 GATNVTIARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT  238 (300)
T ss_pred             chhHHHHHHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence            54432211111111111   11 111247999999999999999999987654

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=98.87  E-value=5.5e-09  Score=83.91  Aligned_cols=67  Identities=15%  Similarity=0.246  Sum_probs=53.5

Q ss_pred             CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCC
Q 031293           30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV  109 (162)
Q Consensus        30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~  109 (162)
                      +.++.++||||+             ..+........+.+|++++|+|+..++...+..++..+...++|.++++||+|..
T Consensus        85 ~~~i~liDTPG~-------------~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~  151 (720)
T TIGR00490        85 EYLINLIDTPGH-------------VDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALKENVKPVLFINKVDRL  151 (720)
T ss_pred             ceEEEEEeCCCc-------------cccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHHHHHcCCCEEEEEEChhcc
Confidence            456899999999             3333344445566799999999999888888888877777788999999999986

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]

Probab=98.87  E-value=1.7e-08  Score=74.13  Aligned_cols=124  Identities=17%  Similarity=0.221  Sum_probs=85.9

Q ss_pred             cCCCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCC-----C--Ccc
Q 031293           15 SDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG-----V--KPR   84 (162)
Q Consensus        15 ~~~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~-----~--~~~   84 (162)
                      ....|.|.......+   .+++++.|+|||             ..++.+++.++.++|+.++|+.++.+     +  ..+
T Consensus       138 eR~kgKtvEvGrA~FEte~~~ftiLDApGH-------------k~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQ  204 (501)
T KOG0459|consen  138 ERDKGKTVEVGRAYFETENKRFTILDAPGH-------------KSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQ  204 (501)
T ss_pred             hhhccceeeeeeEEEEecceeEEeeccCcc-------------cccchhhccccchhhhhhhhhhhhhchhhcccccccc
Confidence            345667766554333   567999999999             88899999999999999999998642     1  224


Q ss_pred             HHHHHHHHHHhCCc-eEEEEeccCCC----CcHHHHHHHHHHHHHHHh---cCCCCCCeEEeecCCCCCHHHHHH
Q 031293           85 DHELISLMERSQTK-YQVVLTKTDTV----FPIDVARRAMQIEESLKA---NNSLVQPVMMVSSKSGAGIRSLRT  151 (162)
Q Consensus        85 ~~~~~~~l~~~~~~-~ivv~nK~Dl~----~~~~~~~~~~~~~~~~~~---~~~~~~~i~~~Sa~~~~g~~~l~~  151 (162)
                      ..++....+..++. .++++||+|-.    +...+.+..+.+..++..   +......++++|..+|.++.+..+
T Consensus       205 TREha~Lakt~gv~~lVv~vNKMddPtvnWs~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~  279 (501)
T KOG0459|consen  205 TREHAMLAKTAGVKHLIVLINKMDDPTVNWSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD  279 (501)
T ss_pred             hhHHHHHHHhhccceEEEEEEeccCCccCcchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence            45555555544544 79999999975    233345555555555543   233345789999999999877543

>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]

Probab=98.87  E-value=1.8e-09  Score=68.21  Aligned_cols=112  Identities=16%  Similarity=0.175  Sum_probs=72.9

Q ss_pred             CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCC--CCccHHHHHHHHHH---hCCceEEEEec
Q 031293           31 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG--VKPRDHELISLMER---SQTKYQVVLTK  105 (162)
Q Consensus        31 ~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~--~~~~~~~~~~~l~~---~~~~~ivv~nK  105 (162)
                      -+++++|..|..      ..    ..+..+|...   .|.+++|||+.+.  +.....++.+.+.+   ..+|+.+..||
T Consensus        62 f~LnvwDiGGqr------~I----RpyWsNYyen---vd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfank  128 (185)
T KOG0074|consen   62 FHLNVWDIGGQR------GI----RPYWSNYYEN---VDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANK  128 (185)
T ss_pred             EEEEEEecCCcc------cc----chhhhhhhhc---cceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhh
Confidence            468999999982      22    3445555443   3999999998652  11222223233332   35899999999


Q ss_pred             cCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293          106 TDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  157 (162)
Q Consensus       106 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~  157 (162)
                      .|++.....+.....+  .+.....+.+.+-.+||.+++|...-..|+....
T Consensus       129 Qdlltaa~~eeia~kl--nl~~lrdRswhIq~csals~eg~~dg~~wv~sn~  178 (185)
T KOG0074|consen  129 QDLLTAAKVEEIALKL--NLAGLRDRSWHIQECSALSLEGSTDGSDWVQSNP  178 (185)
T ss_pred             hHHHhhcchHHHHHhc--chhhhhhceEEeeeCccccccCccCcchhhhcCC
Confidence            9987555444332222  2334445678999999999999998888887543

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=98.86  E-value=1e-07  Score=65.31  Aligned_cols=96  Identities=13%  Similarity=0.057  Sum_probs=55.1

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHH-HHHHHHHH----------------
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDH-ELISLMER----------------   94 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~-~~~~~l~~----------------   94 (162)
                      .+.+|||+|.          +.+..+...+++   +++++++|.|....-+-... .++..+..                
T Consensus        55 ~l~IwDtaG~----------e~~~~l~~~~yr---~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~  121 (202)
T cd04102          55 FVELWDVGGS----------ESVKSTRAVFYN---QVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYD  121 (202)
T ss_pred             EEEEEecCCc----------hhHHHHHHHHhC---cCCEEEEEEECcChHHHHHHHHHHHHHHHhhcccccccccccccc
Confidence            4789999998          233444444544   45999999998764322222 23333322                


Q ss_pred             ------hCCceEEEEeccCCCCcHHHHH--HHHHHHHHHHhcCCCCCCeEEeecCCC
Q 031293           95 ------SQTKYQVVLTKTDTVFPIDVAR--RAMQIEESLKANNSLVQPVMMVSSKSG  143 (162)
Q Consensus        95 ------~~~~~ivv~nK~Dl~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~~Sa~~~  143 (162)
                            .++|+++|.||+|+.++...+.  ............+   .+-+..+|.+.
T Consensus       122 ~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia~~~~---~~~i~~~c~~~  175 (202)
T cd04102         122 SEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGFVAEQGN---AEEINLNCTNG  175 (202)
T ss_pred             ccccCCCCceEEEEEECccchhhcccchHHHhhHhhhHHHhcC---CceEEEecCCc
Confidence                  2589999999999975432221  1111112223333   36777777764

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]

Probab=98.86  E-value=5.4e-09  Score=67.50  Aligned_cols=108  Identities=15%  Similarity=0.090  Sum_probs=70.4

Q ss_pred             CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec--CCCCCccHHHHHHHHHHh----CCceEEEEe
Q 031293           31 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT--KWGVKPRDHELISLMERS----QTKYQVVLT  104 (162)
Q Consensus        31 ~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~--~~~~~~~~~~~~~~l~~~----~~~~ivv~n  104 (162)
                      .++.+|||+|+          ++++.+...|.++.   .++++|.|.  ++.+...+ .+++.+...    ++-.++|.|
T Consensus        60 ~KlaiWDTAGq----------ErFRtLTpSyyRga---qGiIlVYDVT~Rdtf~kLd-~W~~Eld~Ystn~diikmlVgN  125 (209)
T KOG0080|consen   60 LKLAIWDTAGQ----------ERFRTLTPSYYRGA---QGIILVYDVTSRDTFVKLD-IWLKELDLYSTNPDIIKMLVGN  125 (209)
T ss_pred             EEEEEEeccch----------HhhhccCHhHhccC---ceeEEEEEccchhhHHhHH-HHHHHHHhhcCCccHhHhhhcc
Confidence            36899999999          55666677787766   566777664  44555554 344555443    234688999


Q ss_pred             ccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293          105 KTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  157 (162)
Q Consensus       105 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~  157 (162)
                      |+|.-++..+.  .+.-.++...+.   .-++.+||++.+|+...++-+.+.+
T Consensus       126 KiDkes~R~V~--reEG~kfAr~h~---~LFiE~SAkt~~~V~~~FeelveKI  173 (209)
T KOG0080|consen  126 KIDKESERVVD--REEGLKFARKHR---CLFIECSAKTRENVQCCFEELVEKI  173 (209)
T ss_pred             cccchhccccc--HHHHHHHHHhhC---cEEEEcchhhhccHHHHHHHHHHHH
Confidence            99964322221  133344555454   4789999999999988877776543

>PRK13796 GTPase YqeH; Provisional

Probab=98.85  E-value=6.4e-08  Score=72.06  Aligned_cols=93  Identities=15%  Similarity=0.045  Sum_probs=59.2

Q ss_pred             HhcCcccc-eeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcHH-HHHHHHHHHHHHHhcCCCCCCeEEee
Q 031293           62 VSTRVSLK-RVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPID-VARRAMQIEESLKANNSLVQPVMMVS  139 (162)
Q Consensus        62 ~~~~~~~~-~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~S  139 (162)
                      +......+ .+++|+|+.+........+.+..  .+.|+++|+||+|+.+... .+...++.+......+....+++.+|
T Consensus        63 l~~i~~~~~lIv~VVD~~D~~~s~~~~L~~~~--~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~g~~~~~v~~vS  140 (365)
T PRK13796         63 LNGIGDSDALVVNVVDIFDFNGSWIPGLHRFV--GNNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKELGLRPVDVVLIS  140 (365)
T ss_pred             HHhhcccCcEEEEEEECccCCCchhHHHHHHh--CCCCEEEEEEchhhCCCccCHHHHHHHHHHHHHhcCCCcCcEEEEE
Confidence            33333334 89999999874433332232222  2689999999999975332 22222333434444443334789999


Q ss_pred             cCCCCCHHHHHHHHHHh
Q 031293          140 SKSGAGIRSLRTVLSKI  156 (162)
Q Consensus       140 a~~~~g~~~l~~~i~~~  156 (162)
                      |+++.|++++++.|.+.
T Consensus       141 Ak~g~gI~eL~~~I~~~  157 (365)
T PRK13796        141 AQKGHGIDELLEAIEKY  157 (365)
T ss_pred             CCCCCCHHHHHHHHHHh
Confidence            99999999999999764

>PRK12288 GTPase RsgA; Reviewed

Probab=98.84  E-value=6.8e-08  Score=71.30  Aligned_cols=87  Identities=17%  Similarity=0.153  Sum_probs=58.3

Q ss_pred             cccceeEEEeecCCCCCccHHH-HHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCC
Q 031293           66 VSLKRVCLLIDTKWGVKPRDHE-LISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGA  144 (162)
Q Consensus        66 ~~~~~vi~vid~~~~~~~~~~~-~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~  144 (162)
                      .++|.+++|.+....++....+ ++..+...++|.++|+||+|+.+..+.... ..+.+.+...+   .+++++||+++.
T Consensus       119 ANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~~~i~~VIVlNK~DL~~~~~~~~~-~~~~~~y~~~g---~~v~~vSA~tg~  194 (347)
T PRK12288        119 ANIDQIVIVSAVLPELSLNIIDRYLVACETLGIEPLIVLNKIDLLDDEGRAFV-NEQLDIYRNIG---YRVLMVSSHTGE  194 (347)
T ss_pred             EEccEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEEECccCCCcHHHHHH-HHHHHHHHhCC---CeEEEEeCCCCc
Confidence            5679988888876544433322 344455567999999999999864432221 22222233233   489999999999


Q ss_pred             CHHHHHHHHHHh
Q 031293          145 GIRSLRTVLSKI  156 (162)
Q Consensus       145 g~~~l~~~i~~~  156 (162)
                      |+++|++.+...
T Consensus       195 GideL~~~L~~k  206 (347)
T PRK12288        195 GLEELEAALTGR  206 (347)
T ss_pred             CHHHHHHHHhhC
Confidence            999999998753

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=98.83  E-value=2e-07  Score=64.51  Aligned_cols=113  Identities=16%  Similarity=0.183  Sum_probs=69.3

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCC--CCCccHHHHHHHHHHh---CCceEEEEecc
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW--GVKPRDHELISLMERS---QTKYQVVLTKT  106 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~--~~~~~~~~~~~~l~~~---~~~~ivv~nK~  106 (162)
                      ++.+|||+|+          +.+..++..|..+.   ++++++.|...  ........+...+...   ..|++++.||+
T Consensus        55 ~~~~~Dt~gq----------~~~~~~~~~y~~~~---~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~  121 (219)
T COG1100          55 KLQLWDTAGQ----------EEYRSLRPEYYRGA---NGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKI  121 (219)
T ss_pred             EEEeecCCCH----------HHHHHHHHHHhcCC---CEEEEEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEeccc
Confidence            3889999999          34455566665544   78888877654  2223334445555443   48999999999


Q ss_pred             CCCCcHHHHHHH----------HHHHHHHHhcCCCCCCeEEeecC--CCCCHHHHHHHHHHhh
Q 031293          107 DTVFPIDVARRA----------MQIEESLKANNSLVQPVMMVSSK--SGAGIRSLRTVLSKIA  157 (162)
Q Consensus       107 Dl~~~~~~~~~~----------~~~~~~~~~~~~~~~~i~~~Sa~--~~~g~~~l~~~i~~~~  157 (162)
                      |+..........          ................++.+|+.  .+.++.+++..+.+.+
T Consensus       122 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~v~~~~~~~~~~~  184 (219)
T COG1100         122 DLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETSAKSLTGPNVNELFKELLRKL  184 (219)
T ss_pred             ccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEeecccCCCcCHHHHHHHHHHHH
Confidence            998654321111          00011111111111238999999  9999999998887655

>PRK01889 GTPase RsgA; Reviewed

Probab=98.81  E-value=6.3e-08  Score=71.85  Aligned_cols=82  Identities=24%  Similarity=0.307  Sum_probs=60.2

Q ss_pred             cccceeEEEeecCCCCCccH-HHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCC
Q 031293           66 VSLKRVCLLIDTKWGVKPRD-HELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGA  144 (162)
Q Consensus        66 ~~~~~vi~vid~~~~~~~~~-~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~  144 (162)
                      .++|.+++|+++..++.... ..++..+...++|.++|+||+|+.+...  ...+.+...  .   ...+++++|+.++.
T Consensus       111 ANvD~vliV~s~~p~~~~~~ldr~L~~a~~~~i~piIVLNK~DL~~~~~--~~~~~~~~~--~---~g~~Vi~vSa~~g~  183 (356)
T PRK01889        111 ANVDTVFIVCSLNHDFNLRRIERYLALAWESGAEPVIVLTKADLCEDAE--EKIAEVEAL--A---PGVPVLAVSALDGE  183 (356)
T ss_pred             EeCCEEEEEEecCCCCChhHHHHHHHHHHHcCCCEEEEEEChhcCCCHH--HHHHHHHHh--C---CCCcEEEEECCCCc
Confidence            57899999999976665533 3456667778899999999999986422  222333332  1   12589999999999


Q ss_pred             CHHHHHHHHH
Q 031293          145 GIRSLRTVLS  154 (162)
Q Consensus       145 g~~~l~~~i~  154 (162)
                      |+++|..++.
T Consensus       184 gl~~L~~~L~  193 (356)
T PRK01889        184 GLDVLAAWLS  193 (356)
T ss_pred             cHHHHHHHhh
Confidence            9999999985

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=98.77  E-value=2.8e-07  Score=66.58  Aligned_cols=105  Identities=17%  Similarity=0.159  Sum_probs=66.6

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEE---EeCCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT   77 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~---~~~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~   77 (162)
                      ++|+|+|+ ..+.++..++.|......   ..+.++.++||||+.+..   ...+.....++.++.. .++|++++|...
T Consensus        54 liNsIlG~-~v~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~---~~~e~~~~~ik~~l~~-~g~DvVLyV~rL  128 (313)
T TIGR00991        54 TVNSIIGE-RIATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEGG---YINDQAVNIIKRFLLG-KTIDVLLYVDRL  128 (313)
T ss_pred             HHHHHhCC-CcccccCCCCcceeEEEEEEEECCeEEEEEECCCCCchH---HHHHHHHHHHHHHhhc-CCCCEEEEEecc
Confidence            57999998 566677776655433222   236679999999996541   1122223345555443 357999999543


Q ss_pred             CC-CCCccHHHHHHHHHHh-----CCceEEEEeccCCCC
Q 031293           78 KW-GVKPRDHELISLMERS-----QTKYQVVLTKTDTVF  110 (162)
Q Consensus        78 ~~-~~~~~~~~~~~~l~~~-----~~~~ivv~nK~Dl~~  110 (162)
                      .. .+...+.+.++.+...     ..+.++++|+.|..+
T Consensus       129 D~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~  167 (313)
T TIGR00991       129 DAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSP  167 (313)
T ss_pred             CcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCC
Confidence            22 3555666666665542     357999999999773

>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.74  E-value=1.9e-08  Score=77.19  Aligned_cols=72  Identities=18%  Similarity=0.242  Sum_probs=60.3

Q ss_pred             CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCC
Q 031293           30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV  109 (162)
Q Consensus        30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~  109 (162)
                      +.++.++|||||             -++..+..++++-.|++++|+++-.++..+..-....+.+.++|.+..+||+|.+
T Consensus       103 ~~~iNiIDTPGH-------------vDFT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~ry~vP~i~FiNKmDRm  169 (721)
T KOG0465|consen  103 DYRINIIDTPGH-------------VDFTFEVERALRVLDGAVLVLDAVAGVESQTETVWRQMKRYNVPRICFINKMDRM  169 (721)
T ss_pred             cceeEEecCCCc-------------eeEEEEehhhhhhccCeEEEEEcccceehhhHHHHHHHHhcCCCeEEEEehhhhc
Confidence            557999999999             5555565566666799999999999998888888888999999999999999987


Q ss_pred             CcHHH
Q 031293          110 FPIDV  114 (162)
Q Consensus       110 ~~~~~  114 (162)
                      ..+.+
T Consensus       170 Ga~~~  174 (721)
T KOG0465|consen  170 GASPF  174 (721)
T ss_pred             CCChH
Confidence            55544

>KOG0395 consensus Ras-related GTPase [General function prediction only]

Probab=98.73  E-value=4.6e-08  Score=66.68  Aligned_cols=110  Identities=14%  Similarity=0.110  Sum_probs=67.8

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHHHHH----HhCCceEEEEecc
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLME----RSQTKYQVVLTKT  106 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~~l~----~~~~~~ivv~nK~  106 (162)
                      .+.++||+|.          +.+..+...|++..   ++.++|.+..+..+=.. ..+.+.+.    ...+|+++|.||+
T Consensus        52 ~l~ilDt~g~----------~~~~~~~~~~~~~~---~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~  118 (196)
T KOG0395|consen   52 MLEILDTAGQ----------EEFSAMRDLYIRNG---DGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKC  118 (196)
T ss_pred             EEEEEcCCCc----------ccChHHHHHhhccC---cEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcc
Confidence            3779999995          22345556666655   56666665543211111 12223332    1258999999999


Q ss_pred             CCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhhh
Q 031293          107 DTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARF  159 (162)
Q Consensus       107 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~~  159 (162)
                      |+.....+..  +..++......   .+++.+||+...++++++..+.+.+..
T Consensus       119 Dl~~~R~V~~--eeg~~la~~~~---~~f~E~Sak~~~~v~~~F~~L~r~~~~  166 (196)
T KOG0395|consen  119 DLERERQVSE--EEGKALARSWG---CAFIETSAKLNYNVDEVFYELVREIRL  166 (196)
T ss_pred             cchhccccCH--HHHHHHHHhcC---CcEEEeeccCCcCHHHHHHHHHHHHHh
Confidence            9975433322  22333333222   479999999999999999999876653

>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]

Probab=98.73  E-value=2.1e-08  Score=77.86  Aligned_cols=65  Identities=22%  Similarity=0.286  Sum_probs=58.3

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCC
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV  109 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~  109 (162)
                      -++++|||||             ..+..++.+.++.+|++++++|+.++++-....+++..-..+.|+.+|+||+|.+
T Consensus       198 l~nilDTPGH-------------VnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq~~~~i~vviNKiDRL  262 (971)
T KOG0468|consen  198 LMNILDTPGH-------------VNFSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQNRLPIVVVINKVDRL  262 (971)
T ss_pred             eeeeecCCCc-------------ccchHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHHhccCcEEEEEehhHHH
Confidence            3889999999             7778888888888999999999999999988888887777799999999999964

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=98.73  E-value=3.3e-08  Score=66.04  Aligned_cols=55  Identities=16%  Similarity=0.122  Sum_probs=42.8

Q ss_pred             ceeEEEeecCCCCCccHHHHHHH--HHHhCCceEEEEeccCCCCcHHHHHHHHHHHH
Q 031293           69 KRVCLLIDTKWGVKPRDHELISL--MERSQTKYQVVLTKTDTVFPIDVARRAMQIEE  123 (162)
Q Consensus        69 ~~vi~vid~~~~~~~~~~~~~~~--l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~  123 (162)
                      |++++|+|++.++...+..+.+.  +...+.|+++|+||+|++++.....+.+.+++
T Consensus         1 DvVl~VvDar~p~~~~~~~i~~~~~l~~~~kp~IlVlNK~DL~~~~~l~~~~~~~~~   57 (172)
T cd04178           1 DVILEVLDARDPLGCRCPQVEEAVLQAGGNKKLVLVLNKIDLVPKENVEKWLKYLRR   57 (172)
T ss_pred             CEEEEEEECCCCCCCCCHHHHHHHHhccCCCCEEEEEehhhcCCHHHHHHHHHHHHh
Confidence            68999999999888877777776  44457899999999999977665555555443

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]

Probab=98.65  E-value=2.4e-07  Score=72.89  Aligned_cols=65  Identities=22%  Similarity=0.199  Sum_probs=51.5

Q ss_pred             CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccC
Q 031293           30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTD  107 (162)
Q Consensus        30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~D  107 (162)
                      +..+.++|+|||             -+|--+...+.+-+|+.++++|+-+++..++...+...-..+...++|+||+|
T Consensus        71 ~~~~nlidspgh-------------vdf~sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~~~~~~~lvinkid  135 (887)
T KOG0467|consen   71 DYLINLIDSPGH-------------VDFSSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWIEGLKPILVINKID  135 (887)
T ss_pred             ceEEEEecCCCc-------------cchhhhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHHccCceEEEEehhh
Confidence            445899999999             33334444445567999999999999999888888755555788999999999

>PLN00023 GTP-binding protein; Provisional

Probab=98.65  E-value=2.9e-07  Score=66.91  Aligned_cols=66  Identities=17%  Similarity=0.188  Sum_probs=43.7

Q ss_pred             eEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHH-HHHHHHHHh---------------C
Q 031293           33 LCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDH-ELISLMERS---------------Q   96 (162)
Q Consensus        33 ~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~-~~~~~l~~~---------------~   96 (162)
                      +.||||+|+          +.+..+...+++   +++++++|.|....-+-... .++..+...               +
T Consensus        85 LqIWDTAGq----------ErfrsL~~~yyr---~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~  151 (334)
T PLN00023         85 VELWDVSGH----------ERYKDCRSLFYS---QINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLP  151 (334)
T ss_pred             EEEEECCCC----------hhhhhhhHHhcc---CCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCC
Confidence            889999999          333444555543   46999999998764322222 234444432               3


Q ss_pred             CceEEEEeccCCCCc
Q 031293           97 TKYQVVLTKTDTVFP  111 (162)
Q Consensus        97 ~~~ivv~nK~Dl~~~  111 (162)
                      +|+++|.||+|+..+
T Consensus       152 ipIILVGNK~DL~~~  166 (334)
T PLN00023        152 VPYIVIGNKADIAPK  166 (334)
T ss_pred             CcEEEEEECcccccc
Confidence            789999999999754

>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1

Probab=98.57  E-value=1.2e-06  Score=61.05  Aligned_cols=128  Identities=12%  Similarity=0.048  Sum_probs=65.6

Q ss_pred             CcceEEEEEEe----CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHH----H
Q 031293           19 GLTQTINFFKL----GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELI----S   90 (162)
Q Consensus        19 g~t~~~~~~~~----~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~----~   90 (162)
                      |.|.++..-.+    .-.+.+||+||+...-..     .+.......   .+.+.++++|+|+...-...+...+    +
T Consensus        32 ~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~-----~~~~~~~~i---f~~v~~LIyV~D~qs~~~~~~l~~~~~~i~  103 (232)
T PF04670_consen   32 EPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMEN-----YFNSQREEI---FSNVGVLIYVFDAQSDDYDEDLAYLSDCIE  103 (232)
T ss_dssp             ----SEEEEEEECTTSCEEEEEEE-SSCSTTHT-----THTCCHHHH---HCTESEEEEEEETT-STCHHHHHHHHHHHH
T ss_pred             CCcCCceEEEEecCCCcEEEEEEcCCccccccc-----cccccHHHH---HhccCEEEEEEEcccccHHHHHHHHHHHHH
Confidence            44554444333    336899999999432100     000001111   2456899999999843223333332    2


Q ss_pred             HHHHh--CCceEEEEeccCCCCcHHHHHHH----HHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHH
Q 031293           91 LMERS--QTKYQVVLTKTDTVFPIDVARRA----MQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSK  155 (162)
Q Consensus        91 ~l~~~--~~~~ivv~nK~Dl~~~~~~~~~~----~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~  155 (162)
                      .+.+.  ++.+-+.+.|+|++.++......    +.+.+.+...+.....++.+|-.+ +.+-+.|+.+.+
T Consensus       104 ~l~~~sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TSI~D-~Sly~A~S~Ivq  173 (232)
T PF04670_consen  104 ALRQYSPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTSIWD-ESLYEAWSKIVQ  173 (232)
T ss_dssp             HHHHHSTT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-TTS-THHHHHHHHHHH
T ss_pred             HHHHhCCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEeccCcC-cHHHHHHHHHHH
Confidence            23332  46799999999999766654444    344444444443335777888777 467777777765

RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.

>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains

Probab=98.57  E-value=4.1e-06  Score=65.96  Aligned_cols=108  Identities=16%  Similarity=0.158  Sum_probs=65.3

Q ss_pred             ChhcccCCCCceeccC-CCCcceEEEEE-Ee-CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293            1 MLNALTRQWGVVRTSD-KPGLTQTINFF-KL-GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT   77 (162)
Q Consensus         1 lin~L~~~~~~~~~~~-~~g~t~~~~~~-~~-~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~   77 (162)
                      ++|+|+++ ....++. .+++|+..... .. +.++.+|||||+.+........+.+...+.+++... .+|++++|...
T Consensus       134 LINSILGe-kvf~vss~~~~TTr~~ei~~~idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~Lsk~-gpDVVLlV~RL  211 (763)
T TIGR00993       134 TINSIFGE-VKFSTDAFGMGTTSVQEIEGLVQGVKIRVIDTPGLKSSASDQSKNEKILSSVKKFIKKN-PPDIVLYVDRL  211 (763)
T ss_pred             HHHHHhcc-ccccccCCCCCceEEEEEEEEECCceEEEEECCCCCccccchHHHHHHHHHHHHHHhcC-CCCEEEEEEeC
Confidence            58999999 4555555 46666644432 22 667999999999776443322333333444454432 46888888754


Q ss_pred             CCC-CCccHHHHHHHHHHh-----CCceEEEEeccCCCC
Q 031293           78 KWG-VKPRDHELISLMERS-----QTKYQVVLTKTDTVF  110 (162)
Q Consensus        78 ~~~-~~~~~~~~~~~l~~~-----~~~~ivv~nK~Dl~~  110 (162)
                      ... ....+...++.+...     ...+|||+|..|...
T Consensus       212 d~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp  250 (763)
T TIGR00993       212 DMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAP  250 (763)
T ss_pred             CCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence            321 111333455555432     245899999999885

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=98.56  E-value=1.4e-06  Score=61.21  Aligned_cols=105  Identities=18%  Similarity=0.311  Sum_probs=64.9

Q ss_pred             CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCC--CCccHHHHHHHHHHhCCceEEEEeccC
Q 031293           30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG--VKPRDHELISLMERSQTKYQVVLTKTD  107 (162)
Q Consensus        30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~--~~~~~~~~~~~l~~~~~~~ivv~nK~D  107 (162)
                      +..+.++.|.|.|..          +--+..+      +|.+++|+.+..+  ++..-.-+++.      .=++|+||+|
T Consensus       121 G~D~IiiETVGvGQs----------E~~I~~~------aD~~v~v~~Pg~GD~iQ~~KaGimEi------aDi~vVNKaD  178 (266)
T PF03308_consen  121 GFDVIIIETVGVGQS----------EVDIADM------ADTVVLVLVPGLGDEIQAIKAGIMEI------ADIFVVNKAD  178 (266)
T ss_dssp             T-SEEEEEEESSSTH----------HHHHHTT------SSEEEEEEESSTCCCCCTB-TTHHHH-------SEEEEE--S
T ss_pred             CCCEEEEeCCCCCcc----------HHHHHHh------cCeEEEEecCCCccHHHHHhhhhhhh------ccEEEEeCCC
Confidence            457899999998764          2223332      4899999887543  22211122222      3488899999


Q ss_pred             CCCcHHHHHHHHHHHHHHHhcC----CCCCCeEEeecCCCCCHHHHHHHHHHhhhh
Q 031293          108 TVFPIDVARRAMQIEESLKANN----SLVQPVMMVSSKSGAGIRSLRTVLSKIARF  159 (162)
Q Consensus       108 l~~~~~~~~~~~~~~~~~~~~~----~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~~  159 (162)
                      .   ........+++..+....    ...+|++.+||.++.|+++|+++|.+...+
T Consensus       179 ~---~gA~~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~~  231 (266)
T PF03308_consen  179 R---PGADRTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHRDY  231 (266)
T ss_dssp             H---HHHHHHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHHHH
T ss_pred             h---HHHHHHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence            4   344555556666555322    123699999999999999999999986554

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=98.53  E-value=9.2e-07  Score=60.89  Aligned_cols=57  Identities=19%  Similarity=0.246  Sum_probs=40.5

Q ss_pred             hCCceEEEEeccCCCCcHH--HHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHh
Q 031293           95 SQTKYQVVLTKTDTVFPID--VARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKI  156 (162)
Q Consensus        95 ~~~~~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~  156 (162)
                      ...|.++++||+|+.+...  ..+..+.+    .... ...+++++||++|.|++++++++.+.
T Consensus       147 ~~~a~iiv~NK~Dl~~~~~~~~~~~~~~l----~~~~-~~~~i~~~Sa~~g~gv~~l~~~i~~~  205 (207)
T TIGR00073       147 FKEADLIVINKADLAEAVGFDVEKMKADA----KKIN-PEAEIILMSLKTGEGLDEWLEFLEGQ  205 (207)
T ss_pred             HhhCCEEEEEHHHccccchhhHHHHHHHH----HHhC-CCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            4578899999999975321  22222232    2222 23689999999999999999999865

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=98.53  E-value=2.9e-06  Score=60.59  Aligned_cols=108  Identities=20%  Similarity=0.290  Sum_probs=66.4

Q ss_pred             CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCC
Q 031293           30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV  109 (162)
Q Consensus        30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~  109 (162)
                      +..+.||.|-|.|..          +--+..+      +|+++++.-+..+   .+.+.++ ..-+.+-=++|+||+|..
T Consensus       143 G~DvIIVETVGvGQs----------ev~I~~~------aDt~~~v~~pg~G---D~~Q~iK-~GimEiaDi~vINKaD~~  202 (323)
T COG1703         143 GYDVIIVETVGVGQS----------EVDIANM------ADTFLVVMIPGAG---DDLQGIK-AGIMEIADIIVINKADRK  202 (323)
T ss_pred             CCCEEEEEecCCCcc----------hhHHhhh------cceEEEEecCCCC---cHHHHHH-hhhhhhhheeeEeccChh
Confidence            567999999998765          2223332      3888888766543   1222221 011133348999999953


Q ss_pred             CcHHHHHHHHHHHHHHHh------cCCCCCCeEEeecCCCCCHHHHHHHHHHhhhhh
Q 031293          110 FPIDVARRAMQIEESLKA------NNSLVQPVMMVSSKSGAGIRSLRTVLSKIARFA  160 (162)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~------~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~~~  160 (162)
                         ..+....+++..+..      .....+|++.+||..|+|+++|+++|.+..++.
T Consensus       203 ---~A~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~~  256 (323)
T COG1703         203 ---GAEKAARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKFL  256 (323)
T ss_pred             ---hHHHHHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHHH
Confidence               222222333332221      122346999999999999999999999887654

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.49  E-value=3.6e-08  Score=73.29  Aligned_cols=121  Identities=14%  Similarity=0.179  Sum_probs=75.0

Q ss_pred             ChhcccCCCC----ceeccCCCCcceEEEEEEeCCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEee
Q 031293            1 MLNALTRQWG----VVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLID   76 (162)
Q Consensus         1 lin~L~~~~~----~~~~~~~~g~t~~~~~~~~~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid   76 (162)
                      |||+|++...    .+.+|..||+|+....+.++..+.++||||+....   ...+.....-..++.....+..+.+.++
T Consensus       170 liN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~~~~~l~DtPG~~~~~---~~~~~l~~~~l~~~~~~~~i~~~~~~l~  246 (360)
T TIGR03597       170 LINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLDDGHSLYDTPGIINSH---QMAHYLDKKDLKYITPKKEIKPKTYQLN  246 (360)
T ss_pred             HHHHHHhhccCCcceeeecCCCCeEeeEEEEEeCCCCEEEECCCCCChh---HhhhhcCHHHHhhcCCCCccCceEEEeC
Confidence            6899988632    45799999999999988886678999999995431   0011111111113333445677888888


Q ss_pred             cCCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHH
Q 031293           77 TKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEES  124 (162)
Q Consensus        77 ~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~  124 (162)
                      ....+.-.....++.+......+.+.++|.+.++....+...+.+++.
T Consensus       247 ~~q~~~~ggl~~~d~~~~~~~~~~~~~~~~~~~h~t~~~~a~~~~~~~  294 (360)
T TIGR03597       247 PNQTLFLGGLARFDYLKGEKTSFTFYVSNELNIHRTKLENADELYNKH  294 (360)
T ss_pred             CCCEEEEceEEEEEEecCCceEEEEEccCCceeEeechhhhHHHHHhh
Confidence            765433333333334443456688888988887665555555555444

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]

Probab=98.48  E-value=5e-08  Score=72.30  Aligned_cols=83  Identities=18%  Similarity=0.237  Sum_probs=61.1

Q ss_pred             CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCC
Q 031293           30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV  109 (162)
Q Consensus        30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~  109 (162)
                      +.++.++|||||-+.          .-.++++++-+   |+++.|+|++.++..+....+......++|.++.+||+|..
T Consensus       101 g~rinlidtpghvdf----------~leverclrvl---dgavav~dasagve~qtltvwrqadk~~ip~~~finkmdk~  167 (753)
T KOG0464|consen  101 GHRINLIDTPGHVDF----------RLEVERCLRVL---DGAVAVFDASAGVEAQTLTVWRQADKFKIPAHCFINKMDKL  167 (753)
T ss_pred             cceEeeecCCCcceE----------EEEHHHHHHHh---cCeEEEEeccCCcccceeeeehhccccCCchhhhhhhhhhh
Confidence            778999999999332          11244454443   99999999999998888888888888899999999999987


Q ss_pred             CcHHHHHHHHHHHHHHH
Q 031293          110 FPIDVARRAMQIEESLK  126 (162)
Q Consensus       110 ~~~~~~~~~~~~~~~~~  126 (162)
                      .. ..+...+.+++.++
T Consensus       168 ~a-nfe~avdsi~ekl~  183 (753)
T KOG0464|consen  168 AA-NFENAVDSIEEKLG  183 (753)
T ss_pred             hh-hhhhHHHHHHHHhC
Confidence            33 34444555555554

>COG1161 Predicted GTPases [General function prediction only]

Probab=98.47  E-value=1.5e-06  Score=63.76  Aligned_cols=102  Identities=20%  Similarity=0.188  Sum_probs=69.0

Q ss_pred             eEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcH
Q 031293           33 LCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPI  112 (162)
Q Consensus        33 ~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~  112 (162)
                      ..+.+.||+-            .+..+....-...+|.++.|+|++.+.......+-++..  +.|.++|+||+|+++..
T Consensus        12 ~~i~~~~g~~------------~k~~~~~~~~~~~~d~vvevvDar~P~~s~~~~l~~~v~--~k~~i~vlNK~DL~~~~   77 (322)
T COG1161          12 NKIQWFPGHM------------KKAKRQLKEVLKSVDVVVEVVDARDPLGTRNPELERIVK--EKPKLLVLNKADLAPKE   77 (322)
T ss_pred             ccccCCCCch------------HHHHHHHHHhcccCCEEEEEEeccccccccCccHHHHHc--cCCcEEEEehhhcCCHH
Confidence            3466778881            233333334445569999999999988777766666655  45569999999999877


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHH
Q 031293          113 DVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLS  154 (162)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~  154 (162)
                      ...++.+.+    ....  ....+.+|+..+.+...+..++.
T Consensus        78 ~~~~W~~~~----~~~~--~~~~~~v~~~~~~~~~~i~~~~~  113 (322)
T COG1161          78 VTKKWKKYF----KKEE--GIKPIFVSAKSRQGGKKIRKALE  113 (322)
T ss_pred             HHHHHHHHH----HhcC--CCccEEEEeecccCccchHHHHH
Confidence            655444333    3332  24678888888888777774333

>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]

Probab=98.45  E-value=9.6e-07  Score=62.36  Aligned_cols=156  Identities=17%  Similarity=0.243  Sum_probs=89.6

Q ss_pred             ChhcccCCCCceecc--CCCCcceEEEEEEe-----CCceEEEcCCCCcccc----cCHHHHHHHHHHHHHHHhcC----
Q 031293            1 MLNALTRQWGVVRTS--DKPGLTQTINFFKL-----GTKLCLVDLPGYGFAY----AKEEVKDAWEELVKEYVSTR----   65 (162)
Q Consensus         1 lin~L~~~~~~~~~~--~~~g~t~~~~~~~~-----~~~~~ivDtpG~~~~~----~~~~~~~~~~~~~~~~~~~~----   65 (162)
                      |++.|++.+.....+  ..|++......|.+     .-+++++||.|+|+.-    ......+.....+..|+...    
T Consensus        58 LmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~iVdyidaQFEaYLQEELKi~  137 (406)
T KOG3859|consen   58 LMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPIVDYIDAQFEAYLQEELKIR  137 (406)
T ss_pred             HHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchHHHHHHHHHHHHHHHHHHHH
Confidence            345555553222222  24554444444544     2369999999999862    12223333333333333221    


Q ss_pred             --------cccceeEEEeec-CCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeE
Q 031293           66 --------VSLKRVCLLIDT-KWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVM  136 (162)
Q Consensus        66 --------~~~~~vi~vid~-~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~  136 (162)
                              +.++++++.|.+ ..++...+.-.++.+.. .+.+|-++-|.|.++..+.......+...+..++.   .|+
T Consensus       138 Rsl~~~hDsRiH~CLYFI~PTGH~LKslDLvtmk~Lds-kVNIIPvIAKaDtisK~eL~~FK~kimsEL~sngv---~IY  213 (406)
T KOG3859|consen  138 RSLFTYHDSRIHVCLYFISPTGHSLKSLDLVTMKKLDS-KVNIIPVIAKADTISKEELKRFKIKIMSELVSNGV---QIY  213 (406)
T ss_pred             HHHHHhccCceEEEEEEecCCCcchhHHHHHHHHHHhh-hhhhHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCc---eee
Confidence                    345666666655 44555555555555553 56678888999999999998888888888876654   555


Q ss_pred             EeecCCCCCHHHHHHHHHHhhhhhc
Q 031293          137 MVSSKSGAGIRSLRTVLSKIARFAK  161 (162)
Q Consensus       137 ~~Sa~~~~g~~~l~~~i~~~~~~~k  161 (162)
                      ... ...+.+.+.-..+...++|+.
T Consensus       214 qfP-tDdetva~~N~~mn~~lPFAV  237 (406)
T KOG3859|consen  214 QFP-TDDETVAKANSEMNHSLPFAV  237 (406)
T ss_pred             ecc-chHHHHHHHHHHhhcCCceeE
Confidence            543 223445555555555555543

>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=98.44  E-value=5.6e-07  Score=59.36  Aligned_cols=107  Identities=15%  Similarity=0.174  Sum_probs=68.6

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCC-ccHHHHHHHHHH--hCCceEEEEeccCC
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVK-PRDHELISLMER--SQTKYQVVLTKTDT  108 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~-~~~~~~~~~l~~--~~~~~ivv~nK~Dl  108 (162)
                      +.-+|||+|.          +.+..+.+.|.++.   ...++|....+..+ ....++......  ..+|.++|-||+|+
T Consensus        70 r~mlWdtagq----------eEfDaItkAyyrga---qa~vLVFSTTDr~SFea~~~w~~kv~~e~~~IPtV~vqNKIDl  136 (246)
T KOG4252|consen   70 RSMLWDTAGQ----------EEFDAITKAYYRGA---QASVLVFSTTDRYSFEATLEWYNKVQKETERIPTVFVQNKIDL  136 (246)
T ss_pred             HHHHHHhccc----------hhHHHHHHHHhccc---cceEEEEecccHHHHHHHHHHHHHHHHHhccCCeEEeeccchh
Confidence            3568899988          55577788887766   56666666544211 112223333322  25999999999999


Q ss_pred             CCcHHHHH-HHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293          109 VFPIDVAR-RAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  157 (162)
Q Consensus       109 ~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~  157 (162)
                      ++.+.... ..+.+.+.+.      ...+-+|++...++..++.++.+.+
T Consensus       137 veds~~~~~evE~lak~l~------~RlyRtSvked~NV~~vF~YLaeK~  180 (246)
T KOG4252|consen  137 VEDSQMDKGEVEGLAKKLH------KRLYRTSVKEDFNVMHVFAYLAEKL  180 (246)
T ss_pred             hHhhhcchHHHHHHHHHhh------hhhhhhhhhhhhhhHHHHHHHHHHH
Confidence            86554332 1122222222      3677899999999999999998754

>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]

Probab=98.38  E-value=1.7e-06  Score=61.89  Aligned_cols=79  Identities=13%  Similarity=0.127  Sum_probs=60.0

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCCCc
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP  111 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~  111 (162)
                      ..-.-|.|||            +.+-++..-......|+++-|-||+-+++.....+.+.+.  .+|.|+|+||+||.+.
T Consensus        23 ~~~~~wfpgH------------makalr~i~~~l~~~D~iiEvrDaRiPLssrn~~~~~~~~--~k~riiVlNK~DLad~   88 (335)
T KOG2485|consen   23 NMPRRWFPGH------------MAKALRAIQNRLPLVDCIIEVRDARIPLSSRNELFQDFLP--PKPRIIVLNKMDLADP   88 (335)
T ss_pred             CCccccCchH------------HHHHHHHHHhhcccccEEEEeeccccCCccccHHHHHhcC--CCceEEEEecccccCc
Confidence            3567789999            2445666666667789999999999999888866666665  7789999999999987


Q ss_pred             HHHHHHHHHHHHH
Q 031293          112 IDVARRAMQIEES  124 (162)
Q Consensus       112 ~~~~~~~~~~~~~  124 (162)
                      .+....++.++..
T Consensus        89 ~~~k~~iq~~~~~  101 (335)
T KOG2485|consen   89 KEQKKIIQYLEWQ  101 (335)
T ss_pred             hhhhHHHHHHHhh
Confidence            7766666555443

>KOG2484 consensus GTPase [General function prediction only]

Probab=98.38  E-value=2.3e-06  Score=63.12  Aligned_cols=60  Identities=18%  Similarity=0.098  Sum_probs=47.2

Q ss_pred             CcccceeEEEeecCCCCCccHHHHHHHHH-Hh-CCceEEEEeccCCCCcHHHHHHHHHHHHH
Q 031293           65 RVSLKRVCLLIDTKWGVKPRDHELISLME-RS-QTKYQVVLTKTDTVFPIDVARRAMQIEES  124 (162)
Q Consensus        65 ~~~~~~vi~vid~~~~~~~~~~~~~~~l~-~~-~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~  124 (162)
                      ...+|+|+.|+||++|......+.-.++. .. ++..|+|+||+|+++.+.+++++.+++..
T Consensus       144 ve~sDVVleVlDARDPlgtR~~~vE~~V~~~~gnKkLILVLNK~DLVPrEv~e~Wl~YLr~~  205 (435)
T KOG2484|consen  144 VEASDVVLEVLDARDPLGTRCPEVEEAVLQAHGNKKLILVLNKIDLVPREVVEKWLVYLRRE  205 (435)
T ss_pred             HhhhheEEEeeeccCCCCCCChhHHHHHHhccCCceEEEEeehhccCCHHHHHHHHHHHHhh
Confidence            34569999999999998887777766553 33 38899999999999888887777666554

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=98.35  E-value=1.1e-06  Score=58.29  Aligned_cols=66  Identities=24%  Similarity=0.468  Sum_probs=45.5

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHH-HHHHhCCceEEEEecc
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELIS-LMERSQTKYQVVLTKT  106 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~-~l~~~~~~~ivv~nK~  106 (162)
                      .+.++||||++......      ...+.+|+   ..+|++++|.++.......+.+.+. ........+++|+||+
T Consensus       102 ~~~lvDtPG~~~~~~~~------~~~~~~~~---~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nk~  168 (168)
T PF00350_consen  102 NLTLVDTPGLNSTNSEH------TEITEEYL---PKADVVIFVVDANQDLTESDMEFLKQMLDPDKSRTIFVLNKA  168 (168)
T ss_dssp             SEEEEEEEEBHSSHTTT------SHHHHHHH---STTEEEEEEEETTSTGGGHHHHHHHHHHTTTCSSEEEEEE-G
T ss_pred             ceEEEeCCccccchhhh------HHHHHHhh---ccCCEEEEEeccCcccchHHHHHHHHHhcCCCCeEEEEEcCC
Confidence            59999999996542211      25566666   3459999999999877766656554 4444456699999995

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>cd01900 YchF YchF subfamily

Probab=98.31  E-value=1.3e-06  Score=62.53  Aligned_cols=70  Identities=21%  Similarity=0.272  Sum_probs=48.4

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEE--Ee-CC-----------------ceEEEcCCCCcccccCHHHHHHHHHHHHH
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFF--KL-GT-----------------KLCLVDLPGYGFAYAKEEVKDAWEELVKE   60 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~--~~-~~-----------------~~~ivDtpG~~~~~~~~~~~~~~~~~~~~   60 (162)
                      |||+|++. . ..++++|++|.+.+..  .+ +.                 ++.++|+||+.......      ..+..+
T Consensus        14 Lfn~Lt~~-~-~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~------~glg~~   85 (274)
T cd01900          14 LFNALTKA-G-AEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKG------EGLGNK   85 (274)
T ss_pred             HHHHHhCC-C-CccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchh------hHHHHH
Confidence            68999999 3 4889999999876642  22 11                 38999999984331110      223345


Q ss_pred             HHhcCcccceeEEEeecC
Q 031293           61 YVSTRVSLKRVCLLIDTK   78 (162)
Q Consensus        61 ~~~~~~~~~~vi~vid~~   78 (162)
                      ++...+.+|++++|+|+.
T Consensus        86 fL~~i~~~D~li~VV~~f  103 (274)
T cd01900          86 FLSHIREVDAIAHVVRCF  103 (274)
T ss_pred             HHHHHHhCCEEEEEEeCc
Confidence            555666789999999975

YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.

>TIGR00101 ureG urease accessory protein UreG

Probab=98.30  E-value=4.5e-06  Score=57.14  Aligned_cols=78  Identities=18%  Similarity=0.201  Sum_probs=50.4

Q ss_pred             ceeEEEeecCCCCCccHHHHHHHHHHhCCce--EEEEeccCCCCc--HHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCC
Q 031293           69 KRVCLLIDTKWGVKPRDHELISLMERSQTKY--QVVLTKTDTVFP--IDVARRAMQIEESLKANNSLVQPVMMVSSKSGA  144 (162)
Q Consensus        69 ~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~--ivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~  144 (162)
                      +.++.|+|+.+.....     .. ....+.+  ++++||+|+.+.  .+...    +.+.+..... ..+++++||++|+
T Consensus       114 ~~~i~vvD~~~~~~~~-----~~-~~~qi~~ad~~~~~k~d~~~~~~~~~~~----~~~~~~~~~~-~~~i~~~Sa~~g~  182 (199)
T TIGR00101       114 DLTIFVIDVAAGDKIP-----RK-GGPGITRSDLLVINKIDLAPMVGADLGV----MERDAKKMRG-EKPFIFTNLKTKE  182 (199)
T ss_pred             CcEEEEEEcchhhhhh-----hh-hHhHhhhccEEEEEhhhccccccccHHH----HHHHHHHhCC-CCCEEEEECCCCC
Confidence            6788999987543211     11 1113344  899999999742  22322    2233333222 3699999999999


Q ss_pred             CHHHHHHHHHHhh
Q 031293          145 GIRSLRTVLSKIA  157 (162)
Q Consensus       145 g~~~l~~~i~~~~  157 (162)
                      |+++++++|.+..
T Consensus       183 gi~el~~~i~~~~  195 (199)
T TIGR00101       183 GLDTVIDWIEHYA  195 (199)
T ss_pred             CHHHHHHHHHhhc
Confidence            9999999998754

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>COG1162 Predicted GTPases [General function prediction only]

Probab=98.24  E-value=2e-05  Score=56.61  Aligned_cols=84  Identities=19%  Similarity=0.237  Sum_probs=56.0

Q ss_pred             cceeEEEeecCCC-CCccHHH-HHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCC
Q 031293           68 LKRVCLLIDTKWG-VKPRDHE-LISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAG  145 (162)
Q Consensus        68 ~~~vi~vid~~~~-~~~~~~~-~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g  145 (162)
                      .|-+++|+.+-.| ++....+ ++-.....++..++++||+|+.++.+...  +.........+   .+++.+|++++.|
T Consensus        80 ~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~~gi~pvIvlnK~DL~~~~~~~~--~~~~~~y~~~g---y~v~~~s~~~~~~  154 (301)
T COG1162          80 NDQAIIVVSLVDPDFNTNLLDRYLVLAEAGGIEPVIVLNKIDLLDDEEAAV--KELLREYEDIG---YPVLFVSAKNGDG  154 (301)
T ss_pred             cceEEEEEeccCCCCCHHHHHHHHHHHHHcCCcEEEEEEccccCcchHHHH--HHHHHHHHhCC---eeEEEecCcCccc
Confidence            3555666565443 4333322 44555667888889999999997665543  23333333333   5999999999999


Q ss_pred             HHHHHHHHHHh
Q 031293          146 IRSLRTVLSKI  156 (162)
Q Consensus       146 ~~~l~~~i~~~  156 (162)
                      +++|.+++...
T Consensus       155 ~~~l~~~l~~~  165 (301)
T COG1162         155 LEELAELLAGK  165 (301)
T ss_pred             HHHHHHHhcCC
Confidence            99999988754

>PRK09601 GTP-binding protein YchF; Reviewed

Probab=98.20  E-value=3.8e-06  Score=62.21  Aligned_cols=70  Identities=19%  Similarity=0.270  Sum_probs=49.7

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEE--EEeC------------------CceEEEcCCCCcccccCHHHHHHHHHHHHH
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINF--FKLG------------------TKLCLVDLPGYGFAYAKEEVKDAWEELVKE   60 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~--~~~~------------------~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~   60 (162)
                      |||+|++. . +.++++|++|++.+.  ....                  .++.++|+||+..... . .    +.+..+
T Consensus        18 LfnaLt~~-~-~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~-~-g----~glg~~   89 (364)
T PRK09601         18 LFNALTKA-G-AEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGAS-K-G----EGLGNQ   89 (364)
T ss_pred             HHHHHhCC-C-CeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCC-h-H----HHHHHH
Confidence            68999999 3 789999999987663  2221                  1489999999843211 1 0    234455


Q ss_pred             HHhcCcccceeEEEeecC
Q 031293           61 YVSTRVSLKRVCLLIDTK   78 (162)
Q Consensus        61 ~~~~~~~~~~vi~vid~~   78 (162)
                      ++...+.+|++++|+|+.
T Consensus        90 fL~~i~~aD~li~VVd~f  107 (364)
T PRK09601         90 FLANIREVDAIVHVVRCF  107 (364)
T ss_pred             HHHHHHhCCEEEEEEeCC
Confidence            666667789999999985

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=98.20  E-value=8.2e-07  Score=55.46  Aligned_cols=62  Identities=16%  Similarity=0.071  Sum_probs=36.1

Q ss_pred             eEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHHHHHH-----hCCceEEEEecc
Q 031293           33 LCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER-----SQTKYQVVLTKT  106 (162)
Q Consensus        33 ~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~~l~~-----~~~~~ivv~nK~  106 (162)
                      +.++|++|....          .......   ...+|++++|.|..++.+-.. .+++.++..     .++|+++|.||.
T Consensus        52 ~~~~d~~g~~~~----------~~~~~~~---~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~  118 (119)
T PF08477_consen   52 LQFWDFGGQEEF----------YSQHQFF---LKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKS  118 (119)
T ss_dssp             EEEEEESSSHCH----------HCTSHHH---HHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-T
T ss_pred             EEEEecCcccee----------cccccch---hhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEecc
Confidence            789999998221          1111111   233599999999886432222 122233332     249999999999


Q ss_pred             C
Q 031293          107 D  107 (162)
Q Consensus       107 D  107 (162)
                      |
T Consensus       119 D  119 (119)
T PF08477_consen  119 D  119 (119)
T ss_dssp             C
T ss_pred             C
Confidence            8

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>KOG0410 consensus Predicted GTP binding protein [General function prediction only]

Probab=98.13  E-value=1.5e-05  Score=57.57  Aligned_cols=135  Identities=15%  Similarity=0.133  Sum_probs=79.4

Q ss_pred             ChhcccCCCCceeccCCCCcceEEE----EEEeCCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEee
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTIN----FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLID   76 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~----~~~~~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid   76 (162)
                      |||+||+.. .. ..+.-.-|.|..    ....+..+.+.||-|+-.. .+......|+    ..+..-..+|+++.|.|
T Consensus       194 LikaLT~Aa-l~-p~drLFATLDpT~h~a~Lpsg~~vlltDTvGFisd-LP~~LvaAF~----ATLeeVaeadlllHvvD  266 (410)
T KOG0410|consen  194 LIKALTKAA-LY-PNDRLFATLDPTLHSAHLPSGNFVLLTDTVGFISD-LPIQLVAAFQ----ATLEEVAEADLLLHVVD  266 (410)
T ss_pred             HHHHHHhhh-cC-ccchhheeccchhhhccCCCCcEEEEeechhhhhh-CcHHHHHHHH----HHHHHHhhcceEEEEee
Confidence            567777552 21 222323333332    2333666899999998211 1111222333    33344455699999999


Q ss_pred             cCCCCCccHHH-HHHHHHHhCCc-------eEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHH
Q 031293           77 TKWGVKPRDHE-LISLMERSQTK-------YQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRS  148 (162)
Q Consensus        77 ~~~~~~~~~~~-~~~~l~~~~~~-------~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~  148 (162)
                      .+.|.-....+ .+.-|+..++|       ++=|-||+|..+.. .           ... .  -..+++||++|.|+++
T Consensus       267 iShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~-~-----------e~E-~--n~~v~isaltgdgl~e  331 (410)
T KOG0410|consen  267 ISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDE-V-----------EEE-K--NLDVGISALTGDGLEE  331 (410)
T ss_pred             cCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhcccccccccc-C-----------ccc-c--CCccccccccCccHHH
Confidence            98875443333 55666666654       67788888864211 1           100 0  1368899999999999


Q ss_pred             HHHHHHHhh
Q 031293          149 LRTVLSKIA  157 (162)
Q Consensus       149 l~~~i~~~~  157 (162)
                      +...+....
T Consensus       332 l~~a~~~kv  340 (410)
T KOG0410|consen  332 LLKAEETKV  340 (410)
T ss_pred             HHHHHHHHh
Confidence            999987644

>cd00066 G-alpha G protein alpha subunit

Probab=98.09  E-value=4.3e-05  Score=56.04  Aligned_cols=116  Identities=16%  Similarity=0.156  Sum_probs=68.3

Q ss_pred             CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCC--------CccHHHHHHHHHH-------
Q 031293           30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV--------KPRDHELISLMER-------   94 (162)
Q Consensus        30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~--------~~~~~~~~~~l~~-------   94 (162)
                      +..+.++|++|..      ..+..|    ..+.   .+++++++|+|.++.-        ...-.+.+..+..       
T Consensus       160 ~~~~~~~DvgGq~------~~R~kW----~~~f---~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~  226 (317)
T cd00066         160 NLKFRMFDVGGQR------SERKKW----IHCF---EDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWF  226 (317)
T ss_pred             ceEEEEECCCCCc------ccchhH----HHHh---CCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccc
Confidence            4568999999982      122223    3333   3569999999986520        1111222222221       


Q ss_pred             hCCceEEEEeccCCCCc------------------HHHHHHHHHHHHHHHhcC---CCCCCeEEeecCCCCCHHHHHHHH
Q 031293           95 SQTKYQVVLTKTDTVFP------------------IDVARRAMQIEESLKANN---SLVQPVMMVSSKSGAGIRSLRTVL  153 (162)
Q Consensus        95 ~~~~~ivv~nK~Dl~~~------------------~~~~~~~~~~~~~~~~~~---~~~~~i~~~Sa~~~~g~~~l~~~i  153 (162)
                      .+.|+++++||.|+..+                  .......+.+.+.+....   .+..-+..++|..-.++..++..+
T Consensus       227 ~~~pill~~NK~D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v  306 (317)
T cd00066         227 ANTSIILFLNKKDLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAV  306 (317)
T ss_pred             cCCCEEEEccChHHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHH
Confidence            25899999999996421                  123444455554443221   233455667888888888888888


Q ss_pred             HHhhh
Q 031293          154 SKIAR  158 (162)
Q Consensus       154 ~~~~~  158 (162)
                      .+.+.
T Consensus       307 ~~~i~  311 (317)
T cd00066         307 KDIIL  311 (317)
T ss_pred             HHHHH
Confidence            76553

The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.

>COG1161 Predicted GTPases [General function prediction only]

Probab=98.07  E-value=2.9e-06  Score=62.24  Aligned_cols=42  Identities=36%  Similarity=0.593  Sum_probs=38.3

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEeCCceEEEcCCCCcc
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGF   43 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~ivDtpG~~~   43 (162)
                      |||+|.++ ..+.+|+.||+|+......++..+.++||||+-.
T Consensus       148 lIN~L~~k-~~~~~s~~PG~Tk~~q~i~~~~~i~LlDtPGii~  189 (322)
T COG1161         148 LINRLLGK-KVAKTSNRPGTTKGIQWIKLDDGIYLLDTPGIIP  189 (322)
T ss_pred             HHHHHhcc-cceeeCCCCceecceEEEEcCCCeEEecCCCcCC
Confidence            68999999 5799999999999999999988899999999833

>smart00275 G_alpha G protein alpha subunit

Probab=98.07  E-value=8.8e-05  Score=54.98  Aligned_cols=115  Identities=16%  Similarity=0.139  Sum_probs=66.7

Q ss_pred             CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCC--------CccHHHHHHHHHH-------
Q 031293           30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV--------KPRDHELISLMER-------   94 (162)
Q Consensus        30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~--------~~~~~~~~~~l~~-------   94 (162)
                      +..+.++|.+|.      ...+..|    ..++   .++++++||+|.++--        ...-.+.+..+..       
T Consensus       183 ~~~~~~~DvgGq------r~~R~kW----~~~f---~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~  249 (342)
T smart00275      183 KLFFRMFDVGGQ------RSERKKW----IHCF---DNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWF  249 (342)
T ss_pred             CeEEEEEecCCc------hhhhhhH----HHHh---CCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccc
Confidence            445899999998      2222333    3333   3459999999987520        1111222222221       


Q ss_pred             hCCceEEEEeccCCCCcH-----------------HHHHHHHHHHHHHHhcC----CCCCCeEEeecCCCCCHHHHHHHH
Q 031293           95 SQTKYQVVLTKTDTVFPI-----------------DVARRAMQIEESLKANN----SLVQPVMMVSSKSGAGIRSLRTVL  153 (162)
Q Consensus        95 ~~~~~ivv~nK~Dl~~~~-----------------~~~~~~~~~~~~~~~~~----~~~~~i~~~Sa~~~~g~~~l~~~i  153 (162)
                      .+.|+++++||.|+..+.                 ......+.+.+.+....    .+..-++.++|.+-.++..++..+
T Consensus       250 ~~~piil~~NK~D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v  329 (342)
T smart00275      250 ANTSIILFLNKIDLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAV  329 (342)
T ss_pred             cCCcEEEEEecHHhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHH
Confidence            258999999999975211                 12344444544433221    123445667888888888888877


Q ss_pred             HHhh
Q 031293          154 SKIA  157 (162)
Q Consensus       154 ~~~~  157 (162)
                      .+.+
T Consensus       330 ~~~I  333 (342)
T smart00275      330 KDII  333 (342)
T ss_pred             HHHH
Confidence            6644

Subunit of G proteins that contains the guanine nucleotide binding site

>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]

Probab=98.06  E-value=2.9e-05  Score=59.13  Aligned_cols=79  Identities=16%  Similarity=0.208  Sum_probs=53.8

Q ss_pred             HHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHh--CCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCC
Q 031293           57 LVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERS--QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQP  134 (162)
Q Consensus        57 ~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~--~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (162)
                      ++++..+-...+|+|+.|+|++.+.--....+.++..+.  ++..++++||+||+.+.....    |.+.+...+   .+
T Consensus       164 ~WRQLWRVlErSDivvqIVDARnPllfr~~dLe~Yvke~d~~K~~~LLvNKaDLl~~~qr~a----Wa~YF~~~n---i~  236 (562)
T KOG1424|consen  164 IWRQLWRVLERSDIVVQIVDARNPLLFRSPDLEDYVKEVDPSKANVLLVNKADLLPPEQRVA----WAEYFRQNN---IP  236 (562)
T ss_pred             HHHHHHHHHhhcceEEEEeecCCccccCChhHHHHHhccccccceEEEEehhhcCCHHHHHH----HHHHHHhcC---ce
Confidence            344444555677999999999998644444444555443  355788889999997766544    444444443   59


Q ss_pred             eEEeecCC
Q 031293          135 VMMVSSKS  142 (162)
Q Consensus       135 i~~~Sa~~  142 (162)
                      +++.||..
T Consensus       237 ~vf~SA~~  244 (562)
T KOG1424|consen  237 VVFFSALA  244 (562)
T ss_pred             EEEEeccc
Confidence            99999977

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=98.05  E-value=1.3e-05  Score=57.58  Aligned_cols=55  Identities=22%  Similarity=0.245  Sum_probs=39.4

Q ss_pred             CceEEEEeccCCCCc--HHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHh
Q 031293           97 TKYQVVLTKTDTVFP--IDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKI  156 (162)
Q Consensus        97 ~~~ivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~  156 (162)
                      ..-++|+||+|+++.  .+.+...+.+++    .. ...+++++||++|+|++++.+||.+.
T Consensus       231 ~ADIVVLNKiDLl~~~~~dle~~~~~lr~----ln-p~a~I~~vSA~tGeGld~L~~~L~~~  287 (290)
T PRK10463        231 AASLMLLNKVDLLPYLNFDVEKCIACARE----VN-PEIEIILISATSGEGMDQWLNWLETQ  287 (290)
T ss_pred             cCcEEEEEhHHcCcccHHHHHHHHHHHHh----hC-CCCcEEEEECCCCCCHHHHHHHHHHh
Confidence            346999999999852  234433333332    22 23699999999999999999999874

>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]

Probab=98.01  E-value=2.2e-05  Score=53.22  Aligned_cols=110  Identities=14%  Similarity=0.078  Sum_probs=63.5

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCC--CCccHHHHHHHHHHh--CCceEEEEeccC
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG--VKPRDHELISLMERS--QTKYQVVLTKTD  107 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~--~~~~~~~~~~~l~~~--~~~~ivv~nK~D  107 (162)
                      .+.+|||+|+          +.+.. ++..  ....+|++++..+-..+  +......++-.+...  +.|+++|.+|.|
T Consensus        54 ~L~LwDTAGq----------edYDr-lRpl--sY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~D  120 (198)
T KOG0393|consen   54 ELGLWDTAGQ----------EDYDR-LRPL--SYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHCPNVPIILVGTKAD  120 (198)
T ss_pred             EEeeeecCCC----------ccccc-cccc--CCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhCCCCCEEEEeehHH
Confidence            3789999999          22222 1111  33455777665443322  222223344444444  589999999999


Q ss_pred             CCCcHHHHHHH----------HHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHh
Q 031293          108 TVFPIDVARRA----------MQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKI  156 (162)
Q Consensus       108 l~~~~~~~~~~----------~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~  156 (162)
                      +.+.....+.+          +...+.....+.  ..++.+||++..|+.++++.-...
T Consensus       121 Lr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga--~~y~EcSa~tq~~v~~vF~~a~~~  177 (198)
T KOG0393|consen  121 LRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGA--VKYLECSALTQKGVKEVFDEAIRA  177 (198)
T ss_pred             hhhCHHHHHHHHhccCCcccHHHHHHHHHHhCc--ceeeeehhhhhCCcHHHHHHHHHH
Confidence            97433111000          122222333333  689999999999999988876553

>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]

Probab=97.96  E-value=0.00011  Score=54.20  Aligned_cols=69  Identities=19%  Similarity=0.220  Sum_probs=45.0

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEe--------------C-------CceEEEcCCCCccc-ccCHHHHHHHHHHH
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKL--------------G-------TKLCLVDLPGYGFA-YAKEEVKDAWEELV   58 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~--------------~-------~~~~ivDtpG~~~~-~~~~~~~~~~~~~~   58 (162)
                      |||+||.. . +..+++|.+|-+++.-..              +       ..+.++|.+|.-.+ +.+       +.+-
T Consensus        18 lFnAlT~~-~-a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GAs~G-------eGLG   88 (372)
T COG0012          18 LFNALTKA-G-AEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGASKG-------EGLG   88 (372)
T ss_pred             HHHHHHcC-C-ccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCcccC-------CCcc
Confidence            68999999 4 778999999987775211              1       14889999998222 112       2223


Q ss_pred             HHHHhcCcccceeEEEeecC
Q 031293           59 KEYVSTRVSLKRVCLLIDTK   78 (162)
Q Consensus        59 ~~~~~~~~~~~~vi~vid~~   78 (162)
                      .+++...+.+|.++.|+++.
T Consensus        89 NkFL~~IRevdaI~hVVr~f  108 (372)
T COG0012          89 NKFLDNIREVDAIIHVVRCF  108 (372)
T ss_pred             hHHHHhhhhcCeEEEEEEec
Confidence            34444455567777777765

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=97.89  E-value=1.3e-05  Score=57.97  Aligned_cols=43  Identities=33%  Similarity=0.671  Sum_probs=37.5

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEeCCceEEEcCCCCccc
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFA   44 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~ivDtpG~~~~   44 (162)
                      |||+|++. ..+.+++.||+|+.......+..+.++||||.-..
T Consensus       137 liN~l~~~-~~~~~~~~~g~T~~~~~~~~~~~~~l~DtPGi~~~  179 (287)
T PRK09563        137 LINRLAGK-KIAKTGNRPGVTKAQQWIKLGKGLELLDTPGILWP  179 (287)
T ss_pred             HHHHHhcC-CccccCCCCCeEEEEEEEEeCCcEEEEECCCcCCC
Confidence            58999998 56789999999999998888888999999998443

>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.83  E-value=0.00015  Score=47.51  Aligned_cols=113  Identities=19%  Similarity=0.206  Sum_probs=64.9

Q ss_pred             CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCC--CCCccHHHHHHHH--H-HhCCceEEEEe
Q 031293           30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW--GVKPRDHELISLM--E-RSQTKYQVVLT  104 (162)
Q Consensus        30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~--~~~~~~~~~~~~l--~-~~~~~~ivv~n  104 (162)
                      +-+++-.|..||-.      -    ....++|+..   ++.+++++|+-+  .+.+...++-..+  . -.+.|+++..|
T Consensus        63 ~m~ftt~DLGGH~q------A----rr~wkdyf~~---v~~iv~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgn  129 (193)
T KOG0077|consen   63 GMTFTTFDLGGHLQ------A----RRVWKDYFPQ---VDAIVYLVDAYDQERFAESKKELDALLSDESLATVPFLILGN  129 (193)
T ss_pred             CceEEEEccccHHH------H----HHHHHHHHhh---hceeEeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecc
Confidence            44699999999921      1    3345555443   389999999854  2222222221111  1 23799999999


Q ss_pred             ccCCCCcHHHH--HHHHHHHHHHHh--------cCCCCCCeEEeecCCCCCHHHHHHHHHH
Q 031293          105 KTDTVFPIDVA--RRAMQIEESLKA--------NNSLVQPVMMVSSKSGAGIRSLRTVLSK  155 (162)
Q Consensus       105 K~Dl~~~~~~~--~~~~~~~~~~~~--------~~~~~~~i~~~Sa~~~~g~~~l~~~i~~  155 (162)
                      |+|.......+  .....+.+....        .+.+...++.||...+.|.-+-+.|+..
T Consensus       130 KId~p~a~se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evfmcsi~~~~gy~e~fkwl~q  190 (193)
T KOG0077|consen  130 KIDIPYAASEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVFMCSIVRKMGYGEGFKWLSQ  190 (193)
T ss_pred             cccCCCcccHHHHHHHHHHHHHhcccccccccCCCCCeEEEEEEEEEccCccceeeeehhh
Confidence            99987433111  111122222221        1233456888999888887777766654

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=97.79  E-value=2e-05  Score=56.70  Aligned_cols=42  Identities=31%  Similarity=0.604  Sum_probs=36.8

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEeCCceEEEcCCCCcc
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGF   43 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~ivDtpG~~~   43 (162)
                      |||+|++. ..+.++..||+|+....+.++.++.++||||.-.
T Consensus       134 lin~l~~~-~~~~~~~~~g~T~~~~~~~~~~~~~l~DtPG~~~  175 (276)
T TIGR03596       134 LINRLAGK-KVAKVGNRPGVTKGQQWIKLSDGLELLDTPGILW  175 (276)
T ss_pred             HHHHHhCC-CccccCCCCCeecceEEEEeCCCEEEEECCCccc
Confidence            58999998 5788999999999998888877899999999833

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>KOG1673 consensus Ras GTPases [General function prediction only]

Probab=97.78  E-value=0.00066  Score=44.14  Aligned_cols=108  Identities=14%  Similarity=0.102  Sum_probs=66.6

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHHHHHHhCCc--eEEEEeccCC
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERSQTK--YQVVLTKTDT  108 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~~l~~~~~~--~ivv~nK~Dl  108 (162)
                      .|.+||..|.             +.+....--+...+-.++|+.|-..+.+... .++++..+..+..  .|+|.+|.|+
T Consensus        70 sfSIwdlgG~-------------~~~~n~lPiac~dsvaIlFmFDLt~r~TLnSi~~WY~QAr~~NktAiPilvGTKyD~  136 (205)
T KOG1673|consen   70 SFSIWDLGGQ-------------REFINMLPIACKDSVAILFMFDLTRRSTLNSIKEWYRQARGLNKTAIPILVGTKYDL  136 (205)
T ss_pred             EEEEEecCCc-------------HhhhccCceeecCcEEEEEEEecCchHHHHHHHHHHHHHhccCCccceEEeccchHh
Confidence            4889999999             4444333223344578889998655432222 3355555544422  4677899997


Q ss_pred             C---CcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHH
Q 031293          109 V---FPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSK  155 (162)
Q Consensus       109 ~---~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~  155 (162)
                      .   +++...++....+...+.-+   .+.+++|+-...++.+++..+-.
T Consensus       137 fi~lp~e~Q~~I~~qar~YAk~mn---AsL~F~Sts~sINv~KIFK~vlA  183 (205)
T KOG1673|consen  137 FIDLPPELQETISRQARKYAKVMN---ASLFFCSTSHSINVQKIFKIVLA  183 (205)
T ss_pred             hhcCCHHHHHHHHHHHHHHHHHhC---CcEEEeeccccccHHHHHHHHHH
Confidence            5   33333333334444444332   58999999999999999887643

>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1)

Probab=97.76  E-value=0.0003  Score=37.82  Aligned_cols=40  Identities=20%  Similarity=0.207  Sum_probs=23.3

Q ss_pred             cceeEEEeecCCCC--Cc-cHHHHHHHHHHh--CCceEEEEeccC
Q 031293           68 LKRVCLLIDTKWGV--KP-RDHELISLMERS--QTKYQVVLTKTD  107 (162)
Q Consensus        68 ~~~vi~vid~~~~~--~~-~~~~~~~~l~~~--~~~~ivv~nK~D  107 (162)
                      .++++|++|.++..  +- ....+++.++..  ++|+++|+||+|
T Consensus        14 ~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~~~P~i~V~nK~D   58 (58)
T PF06858_consen   14 ADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFPNKPVIVVLNKID   58 (58)
T ss_dssp             -SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTTTS-EEEEE--TT
T ss_pred             cceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCEEEEEeccC
Confidence            48999999988643  22 223345666654  799999999998

The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=97.71  E-value=0.0001  Score=49.67  Aligned_cols=55  Identities=20%  Similarity=0.286  Sum_probs=37.8

Q ss_pred             EEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293          100 QVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  157 (162)
Q Consensus       100 ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~  157 (162)
                      ++|+||.|+.+.-..  -++...+....-.+ ..+++++|+++|+|++++++|+....
T Consensus       146 llVInK~DLa~~v~~--dlevm~~da~~~np-~~~ii~~n~ktg~G~~~~~~~i~~~~  200 (202)
T COG0378         146 LLVINKTDLAPYVGA--DLEVMARDAKEVNP-EAPIIFTNLKTGEGLDEWLRFIEPQA  200 (202)
T ss_pred             EEEEehHHhHHHhCc--cHHHHHHHHHHhCC-CCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence            789999999753332  11222233332222 26999999999999999999998654

>KOG2423 consensus Nucleolar GTPase [General function prediction only]

Probab=97.71  E-value=0.00079  Score=50.27  Aligned_cols=95  Identities=18%  Similarity=0.140  Sum_probs=57.2

Q ss_pred             HHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHh--CCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCC
Q 031293           57 LVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERS--QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQP  134 (162)
Q Consensus        57 ~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~--~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (162)
                      ++.+...-...+|+++-|+||+++....-..+-.+|+..  ++-+|.|+||+||+.--....+   ++-+...+.   .-
T Consensus       203 IW~ELyKViDSSDVvvqVlDARDPmGTrc~~ve~ylkke~phKHli~vLNKvDLVPtwvt~~W---v~~lSkeyP---Ti  276 (572)
T KOG2423|consen  203 IWGELYKVIDSSDVVVQVLDARDPMGTRCKHVEEYLKKEKPHKHLIYVLNKVDLVPTWVTAKW---VRHLSKEYP---TI  276 (572)
T ss_pred             HHHHHHHhhcccceeEEeeeccCCcccccHHHHHHHhhcCCcceeEEEeeccccccHHHHHHH---HHHHhhhCc---ce
Confidence            334444444567999999999998877666666777653  3558999999999854333332   222222221   12


Q ss_pred             eEEeecCCCCCHHHHHHHHHHhh
Q 031293          135 VMMVSSKSGAGIRSLRTVLSKIA  157 (162)
Q Consensus       135 i~~~Sa~~~~g~~~l~~~i~~~~  157 (162)
                      -|..|-.+..|--.|.+.+.+..
T Consensus       277 AfHAsi~nsfGKgalI~llRQf~  299 (572)
T KOG2423|consen  277 AFHASINNSFGKGALIQLLRQFA  299 (572)
T ss_pred             eeehhhcCccchhHHHHHHHHHH
Confidence            23344455566556666665543

>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.70  E-value=0.00046  Score=51.08  Aligned_cols=79  Identities=22%  Similarity=0.305  Sum_probs=49.2

Q ss_pred             ceEEEcCCCCcccccC-HHHHHHHHHHHHHHHhcCcccceeEEEeecCC-CCCccHHHHHHHHHHhCCceEEEEeccCCC
Q 031293           32 KLCLVDLPGYGFAYAK-EEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW-GVKPRDHELISLMERSQTKYQVVLTKTDTV  109 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~-~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~  109 (162)
                      .+++|||||+=....+ .+..-.+...+ ++..  ..+|.++++.|+.. .++....+++..++...-.+=||+||+|.+
T Consensus       148 ~vtiVdtPGILsgeKQrisR~ydF~~v~-~WFa--eR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~EdkiRVVLNKADqV  224 (532)
T KOG1954|consen  148 SVTIVDTPGILSGEKQRISRGYDFTGVL-EWFA--ERVDRIILLFDAHKLDISDEFKRVIDALKGHEDKIRVVLNKADQV  224 (532)
T ss_pred             heeeeccCcccccchhcccccCChHHHH-HHHH--HhccEEEEEechhhccccHHHHHHHHHhhCCcceeEEEecccccc
Confidence            6999999998322111 11100111111 1111  24599999999865 455556667777776666788999999999


Q ss_pred             CcHH
Q 031293          110 FPID  113 (162)
Q Consensus       110 ~~~~  113 (162)
                      +..+
T Consensus       225 dtqq  228 (532)
T KOG1954|consen  225 DTQQ  228 (532)
T ss_pred             CHHH
Confidence            6554

>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]

Probab=97.64  E-value=0.0011  Score=43.04  Aligned_cols=108  Identities=17%  Similarity=0.124  Sum_probs=68.4

Q ss_pred             CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHH-HHHHHh----CCceEEEEec
Q 031293           31 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELI-SLMERS----QTKYQVVLTK  105 (162)
Q Consensus        31 ~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~-~~l~~~----~~~~ivv~nK  105 (162)
                      +.+.+.||.|.-...         ..+-+.|+.   .+|..++|.++.++-+-+..+++ .++...    .+|++++.||
T Consensus        60 E~l~lyDTaGlq~~~---------~eLprhy~q---~aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~  127 (198)
T KOG3883|consen   60 EQLRLYDTAGLQGGQ---------QELPRHYFQ---FADAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANK  127 (198)
T ss_pred             heEEEeecccccCch---------hhhhHhHhc---cCceEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEech
Confidence            358999999982220         223344543   34899999888765433344443 344433    4789999999


Q ss_pred             cCCCCcHHHHHHH-HHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHh
Q 031293          106 TDTVFPIDVARRA-MQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKI  156 (162)
Q Consensus       106 ~Dl~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~  156 (162)
                      .|+..+.+..... +.|.+.      ..+..+.+++.....+-+.+..+...
T Consensus       128 rdr~~p~~vd~d~A~~Wa~r------Ekvkl~eVta~dR~sL~epf~~l~~r  173 (198)
T KOG3883|consen  128 RDRAEPREVDMDVAQIWAKR------EKVKLWEVTAMDRPSLYEPFTYLASR  173 (198)
T ss_pred             hhcccchhcCHHHHHHHHhh------hheeEEEEEeccchhhhhHHHHHHHh
Confidence            9997555433222 122111      12588899999999999888888754

>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=97.62  E-value=0.002  Score=47.62  Aligned_cols=116  Identities=16%  Similarity=0.151  Sum_probs=67.4

Q ss_pred             CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCC--------CCccHHHHHHHHHH-------
Q 031293           30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG--------VKPRDHELISLMER-------   94 (162)
Q Consensus        30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~--------~~~~~~~~~~~l~~-------   94 (162)
                      +.++.++|.+|+      .+.       .++++.=...++.++|+++-++-        .+....+.++....       
T Consensus       194 ~~~f~~~DvGGQ------Rse-------RrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F  260 (354)
T KOG0082|consen  194 GLKFRMFDVGGQ------RSE-------RKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWF  260 (354)
T ss_pred             CCceEEEeCCCc------HHH-------hhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCccc
Confidence            567999999998      333       33333334556999999986541        12222222222222       


Q ss_pred             hCCceEEEEeccCCCCcHH-----------------HHHHHHHHHHHHHhcC---CCCCCeEEeecCCCCCHHHHHHHHH
Q 031293           95 SQTKYQVVLTKTDTVFPID-----------------VARRAMQIEESLKANN---SLVQPVMMVSSKSGAGIRSLRTVLS  154 (162)
Q Consensus        95 ~~~~~ivv~nK~Dl~~~~~-----------------~~~~~~~~~~~~~~~~---~~~~~i~~~Sa~~~~g~~~l~~~i~  154 (162)
                      .+.++|+++||.|+..+.-                 .+.....++..+....   .+..-+..++|.+-.+++.+++++.
T Consensus       261 ~~tsiiLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~  340 (354)
T KOG0082|consen  261 ANTSIILFLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVT  340 (354)
T ss_pred             ccCcEEEEeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHH
Confidence            1467999999999863221                 1333344444333221   1223344567888888888888887


Q ss_pred             Hhhh
Q 031293          155 KIAR  158 (162)
Q Consensus       155 ~~~~  158 (162)
                      +.+.
T Consensus       341 d~Ii  344 (354)
T KOG0082|consen  341 DTII  344 (354)
T ss_pred             HHHH
Confidence            7553

>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]

Probab=97.61  E-value=0.00017  Score=55.24  Aligned_cols=64  Identities=19%  Similarity=0.250  Sum_probs=47.8

Q ss_pred             eEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCC
Q 031293           33 LCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV  109 (162)
Q Consensus        33 ~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~  109 (162)
                      +.++|.|||             -++-.+..++++..|+.++|+|+-+++-.++...+...-...+..++++||+|..
T Consensus       100 iNLIDSPGH-------------VDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~ERIkPvlv~NK~DRA  163 (842)
T KOG0469|consen  100 INLIDSPGH-------------VDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLVMNKMDRA  163 (842)
T ss_pred             EEeccCCCc-------------ccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHhhccceEEeehhhHH
Confidence            679999999             4444555566677799999999999988888777744333355567778999953

>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]

Probab=97.60  E-value=0.00047  Score=48.51  Aligned_cols=51  Identities=18%  Similarity=0.097  Sum_probs=37.6

Q ss_pred             CceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhhh
Q 031293           97 TKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARF  159 (162)
Q Consensus        97 ~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~~  159 (162)
                      ++.+.|.||+|.++-+++..       ..     +.++-+.+||...-|++.+++.|=+.+..
T Consensus       239 ~~ClYvYnKID~vs~eevdr-------lA-----r~PnsvViSC~m~lnld~lle~iWe~l~L  289 (364)
T KOG1486|consen  239 IKCLYVYNKIDQVSIEEVDR-------LA-----RQPNSVVISCNMKLNLDRLLERIWEELNL  289 (364)
T ss_pred             EEEEEEeeccceecHHHHHH-------Hh-----cCCCcEEEEeccccCHHHHHHHHHHHhce
Confidence            46889999999887655432       11     22467889999999999999988776653

>cd03110 Fer4_NifH_child This protein family's function is unkown

Probab=97.59  E-value=0.0018  Score=43.39  Aligned_cols=65  Identities=17%  Similarity=0.082  Sum_probs=43.0

Q ss_pred             CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCC
Q 031293           30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV  109 (162)
Q Consensus        30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~  109 (162)
                      ...+.++||||.-            .......+   ..+|.+++++.+...-.......++.++..+.|+.+|+||+|..
T Consensus        92 ~~d~viiDtpp~~------------~~~~~~~l---~~aD~vliv~~~~~~~~~~~~~~~~~l~~~~~~~~vV~N~~~~~  156 (179)
T cd03110          92 GAELIIIDGPPGI------------GCPVIASL---TGADAALLVTEPTPSGLHDLERAVELVRHFGIPVGVVINKYDLN  156 (179)
T ss_pred             CCCEEEEECcCCC------------cHHHHHHH---HcCCEEEEEecCCcccHHHHHHHHHHHHHcCCCEEEEEeCCCCC
Confidence            4469999998541            11222222   34599999998875432333445667777788899999999974

It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.

>KOG1534 consensus Putative transcription factor FET5 [Transcription]

Probab=97.53  E-value=0.00049  Score=47.10  Aligned_cols=123  Identities=16%  Similarity=0.169  Sum_probs=69.8

Q ss_pred             CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCC--CccHHHHH---HHHHHhCCceEEEEec
Q 031293           31 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV--KPRDHELI---SLMERSQTKYQVVLTK  105 (162)
Q Consensus        31 ~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~--~~~~~~~~---~~l~~~~~~~ivv~nK  105 (162)
                      ..+.+.|+||+-+.....+.   +.++++..-+...+ -++++++|+.--.  +..-.-++   ..+-...+|.|=|++|
T Consensus        98 ddylifDcPGQIELytH~pV---m~~iv~hl~~~~F~-~c~Vylldsqf~vD~~KfiSG~lsAlsAMi~lE~P~INvlsK  173 (273)
T KOG1534|consen   98 DDYLIFDCPGQIELYTHLPV---MPQIVEHLKQWNFN-VCVVYLLDSQFLVDSTKFISGCLSALSAMISLEVPHINVLSK  173 (273)
T ss_pred             CCEEEEeCCCeeEEeecChh---HHHHHHHHhcccCc-eeEEEEeccchhhhHHHHHHHHHHHHHHHHHhcCcchhhhhH
Confidence            45999999999666443322   12333333332223 5677777874311  11111122   2333458999999999


Q ss_pred             cCCCCcHH---HHH------------------------HHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293          106 TDTVFPID---VAR------------------------RAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR  158 (162)
Q Consensus       106 ~Dl~~~~~---~~~------------------------~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~  158 (162)
                      +|+++...   .+.                        .-+.+...+..++  -+.++|..+.+.+.++.++..|...+|
T Consensus       174 MDLlk~~~k~~l~~Fl~~d~~~l~~~~~~~~~s~Kf~~L~~~i~~~v~d~~--Mv~FlPl~~~~eeSi~~iL~~ID~aiQ  251 (273)
T KOG1534|consen  174 MDLLKDKNKKELERFLNPDEYLLLEDSEINLRSPKFKKLTKCIAQLVDDYS--MVNFLPLDSSDEESINIILSYIDDAIQ  251 (273)
T ss_pred             HHHhhhhhHHHHHHhcCCchhhhhcccccccccHHHHHHHHHHHHHhcccc--ceeeeecCCCCHHHHHHHHHHHHHHHH
Confidence            99985421   100                        0001111112222  267888888888899999999988877


Q ss_pred             h
Q 031293          159 F  159 (162)
Q Consensus       159 ~  159 (162)
                      |
T Consensus       252 y  252 (273)
T KOG1534|consen  252 Y  252 (273)
T ss_pred             h
Confidence            5

>PRK13796 GTPase YqeH; Provisional

Probab=97.52  E-value=7.5e-05  Score=55.83  Aligned_cols=41  Identities=29%  Similarity=0.378  Sum_probs=33.7

Q ss_pred             ChhcccCCC----CceeccCCCCcceEEEEEEeCCceEEEcCCCC
Q 031293            1 MLNALTRQW----GVVRTSDKPGLTQTINFFKLGTKLCLVDLPGY   41 (162)
Q Consensus         1 lin~L~~~~----~~~~~~~~~g~t~~~~~~~~~~~~~ivDtpG~   41 (162)
                      |||+|.+..    ....+|..||||++...+.++....++||||+
T Consensus       176 LiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~~~~l~DTPGi  220 (365)
T PRK13796        176 LINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDDGSFLYDTPGI  220 (365)
T ss_pred             HHHHHHhhccCccceEEecCCCCccceeEEEEcCCCcEEEECCCc
Confidence            689997542    34568999999999998888766899999998

>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]

Probab=97.51  E-value=0.00063  Score=53.80  Aligned_cols=68  Identities=10%  Similarity=0.233  Sum_probs=47.3

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCc-eEEEEeccCCCC
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDTVF  110 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~-~ivv~nK~Dl~~  110 (162)
                      .+.++|.||.+.....       ...+....   ..+|++++|.++...++....+++....+. +| +.|+.||+|...
T Consensus       207 DivliDsPGld~~se~-------tswid~~c---ldaDVfVlV~NaEntlt~sek~Ff~~vs~~-KpniFIlnnkwDasa  275 (749)
T KOG0448|consen  207 DIVLIDSPGLDVDSEL-------TSWIDSFC---LDADVFVLVVNAENTLTLSEKQFFHKVSEE-KPNIFILNNKWDASA  275 (749)
T ss_pred             cceeccCCCCCCchhh-------hHHHHHHh---hcCCeEEEEecCccHhHHHHHHHHHHhhcc-CCcEEEEechhhhhc
Confidence            5899999999665321       11222222   235999999999988877777777666554 56 677778999874

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=97.48  E-value=0.0029  Score=45.52  Aligned_cols=102  Identities=17%  Similarity=0.160  Sum_probs=54.5

Q ss_pred             CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcC-----cccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEe
Q 031293           30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTR-----VSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLT  104 (162)
Q Consensus        30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~n  104 (162)
                      +..+.++||||.....  ...    ...++++....     ..++.+++|+|+..+  ..+........+.--+.-+++|
T Consensus       154 ~~D~ViIDT~G~~~~d--~~~----~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~--~~~~~~~~~f~~~~~~~g~IlT  225 (272)
T TIGR00064       154 NIDVVLIDTAGRLQNK--VNL----MDELKKIKRVIKKVDKDAPDEVLLVLDATTG--QNALEQAKVFNEAVGLTGIILT  225 (272)
T ss_pred             CCCEEEEeCCCCCcch--HHH----HHHHHHHHHHHhcccCCCCceEEEEEECCCC--HHHHHHHHHHHhhCCCCEEEEE
Confidence            3468999999984321  111    11122222111     236889999999743  2233333332221224688889


Q ss_pred             ccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHH
Q 031293          105 KTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLR  150 (162)
Q Consensus       105 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~  150 (162)
                      |.|.......  .+...    ...+   .|+.+++  +|++++++.
T Consensus       226 KlDe~~~~G~--~l~~~----~~~~---~Pi~~~~--~Gq~~~dl~  260 (272)
T TIGR00064       226 KLDGTAKGGI--ILSIA----YELK---LPIKFIG--VGEKIDDLA  260 (272)
T ss_pred             ccCCCCCccH--HHHHH----HHHC---cCEEEEe--CCCChHhCc
Confidence            9998654321  11111    1122   4888888  777777654

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.44  E-value=0.0002  Score=47.95  Aligned_cols=107  Identities=13%  Similarity=0.020  Sum_probs=63.4

Q ss_pred             CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCC--CccHHHHHHHHHHh-CCceEEEEeccC
Q 031293           31 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV--KPRDHELISLMERS-QTKYQVVLTKTD  107 (162)
Q Consensus        31 ~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~--~~~~~~~~~~l~~~-~~~~ivv~nK~D  107 (162)
                      -+|..+||.|..          .+...-..|.-..   .|.+++.|-...+  .....++-+..+.. ++|+++..||.|
T Consensus        59 irf~~wdtagqE----------k~gglrdgyyI~~---qcAiimFdVtsr~t~~n~~rwhrd~~rv~~NiPiv~cGNKvD  125 (216)
T KOG0096|consen   59 IRFNVWDTAGQE----------KKGGLRDGYYIQG---QCAIIMFDVTSRFTYKNVPRWHRDLVRVRENIPIVLCGNKVD  125 (216)
T ss_pred             EEEEeeecccce----------eecccccccEEec---ceeEEEeeeeehhhhhcchHHHHHHHHHhcCCCeeeecccee
Confidence            358899999981          1122222222222   4667666654433  33333333444332 589999999999


Q ss_pred             CCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293          108 TVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  157 (162)
Q Consensus       108 l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~  157 (162)
                      ...+....+       .+..+..+....+.+||++..+.+.-+-|+.+.+
T Consensus       126 i~~r~~k~k-------~v~~~rkknl~y~~iSaksn~NfekPFl~LarKl  168 (216)
T KOG0096|consen  126 IKARKVKAK-------PVSFHRKKNLQYYEISAKSNYNFERPFLWLARKL  168 (216)
T ss_pred             ccccccccc-------cceeeecccceeEEeecccccccccchHHHhhhh
Confidence            754331111       1122223446899999999999999999887644

>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=97.34  E-value=0.0041  Score=43.32  Aligned_cols=86  Identities=21%  Similarity=0.243  Sum_probs=57.3

Q ss_pred             CCCcceEEEEEEe----CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcC-----cccceeEEEeecCCCCCccHHH
Q 031293           17 KPGLTQTINFFKL----GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTR-----VSLKRVCLLIDTKWGVKPRDHE   87 (162)
Q Consensus        17 ~~g~t~~~~~~~~----~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~vi~vid~~~~~~~~~~~   87 (162)
                      .+|-|.++..-..    +-.+.++|+.|+             +.++++|+...     ++.+.+++|.|++..-...|..
T Consensus        35 rlg~tidveHsh~RflGnl~LnlwDcGgq-------------e~fmen~~~~q~d~iF~nV~vli~vFDves~e~~~D~~  101 (295)
T KOG3886|consen   35 RLGATIDVEHSHVRFLGNLVLNLWDCGGQ-------------EEFMENYLSSQEDNIFRNVQVLIYVFDVESREMEKDFH  101 (295)
T ss_pred             ccCCcceeeehhhhhhhhheeehhccCCc-------------HHHHHHHHhhcchhhheeheeeeeeeeccchhhhhhHH
Confidence            4666666654322    345779999999             77788887743     4678999999987654455555


Q ss_pred             HHHH-HHHh--C---CceEEEEeccCCCCcHHHH
Q 031293           88 LISL-MERS--Q---TKYQVVLTKTDTVFPIDVA  115 (162)
Q Consensus        88 ~~~~-l~~~--~---~~~ivv~nK~Dl~~~~~~~  115 (162)
                      +.+. |...  +   ..+.+.+.|+|++.....+
T Consensus       102 ~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~d~r~  135 (295)
T KOG3886|consen  102 YYQKCLEALLQNSPEAKIFCLLHKMDLVQEDARE  135 (295)
T ss_pred             HHHHHHHHHHhcCCcceEEEEEeechhcccchHH
Confidence            4432 2211  2   4488899999999655543

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=97.34  E-value=0.0038  Score=45.94  Aligned_cols=105  Identities=16%  Similarity=0.211  Sum_probs=53.6

Q ss_pred             CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhc--CcccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccC
Q 031293           30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVST--RVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTD  107 (162)
Q Consensus        30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~D  107 (162)
                      +..+.++||||.....  ...-+....+ .+.+..  ....+.+++|+|+..+.  .+........+.--+--+++||.|
T Consensus       196 ~~D~ViIDTaGr~~~~--~~l~~eL~~~-~~v~~~~~~~~p~~~~LVl~a~~g~--~~~~~a~~f~~~~~~~giIlTKlD  270 (318)
T PRK10416        196 GIDVLIIDTAGRLHNK--TNLMEELKKI-KRVIKKADPDAPHEVLLVLDATTGQ--NALSQAKAFHEAVGLTGIILTKLD  270 (318)
T ss_pred             CCCEEEEeCCCCCcCC--HHHHHHHHHH-HHHHhhhcCCCCceEEEEEECCCCh--HHHHHHHHHHhhCCCCEEEEECCC
Confidence            3469999999973321  1111111111 111111  12357789999998642  222222222211124578889999


Q ss_pred             CCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHH
Q 031293          108 TVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLR  150 (162)
Q Consensus       108 l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~  150 (162)
                      ......  ..+..    +...+   .|+.+++  +|+++++|.
T Consensus       271 ~t~~~G--~~l~~----~~~~~---~Pi~~v~--~Gq~~~Dl~  302 (318)
T PRK10416        271 GTAKGG--VVFAI----ADELG---IPIKFIG--VGEGIDDLQ  302 (318)
T ss_pred             CCCCcc--HHHHH----HHHHC---CCEEEEe--CCCChhhCc
Confidence            764432  11212    22222   4999998  777777654

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=97.34  E-value=0.0038  Score=47.62  Aligned_cols=73  Identities=16%  Similarity=0.152  Sum_probs=42.2

Q ss_pred             CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCCC
Q 031293           31 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF  110 (162)
Q Consensus        31 ~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~  110 (162)
                      ..+.++||||....      .+..-..+..+.. ...++.+++|+|+..+  .......+.+++.--+--+++||.|...
T Consensus       183 ~DvViIDTaGr~~~------d~~lm~El~~i~~-~~~p~e~lLVlda~~G--q~a~~~a~~F~~~~~~~g~IlTKlD~~a  253 (429)
T TIGR01425       183 FDIIIVDTSGRHKQ------EDSLFEEMLQVAE-AIQPDNIIFVMDGSIG--QAAEAQAKAFKDSVDVGSVIITKLDGHA  253 (429)
T ss_pred             CCEEEEECCCCCcc------hHHHHHHHHHHhh-hcCCcEEEEEeccccC--hhHHHHHHHHHhccCCcEEEEECccCCC
Confidence            46899999996221      1111222333322 2345889999999755  2233444444433335678899999864


Q ss_pred             cH
Q 031293          111 PI  112 (162)
Q Consensus       111 ~~  112 (162)
                      ..
T Consensus       254 rg  255 (429)
T TIGR01425       254 KG  255 (429)
T ss_pred             Cc
Confidence            43

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>PRK14974 cell division protein FtsY; Provisional

Probab=97.33  E-value=0.004  Score=46.11  Aligned_cols=102  Identities=19%  Similarity=0.178  Sum_probs=55.0

Q ss_pred             CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCC
Q 031293           30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV  109 (162)
Q Consensus        30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~  109 (162)
                      +..+.++||||.....  .   ..+ ..++...+. ...+.+++|+|+..+  ....+........--.--+++||.|..
T Consensus       222 ~~DvVLIDTaGr~~~~--~---~lm-~eL~~i~~~-~~pd~~iLVl~a~~g--~d~~~~a~~f~~~~~~~giIlTKlD~~  292 (336)
T PRK14974        222 GIDVVLIDTAGRMHTD--A---NLM-DELKKIVRV-TKPDLVIFVGDALAG--NDAVEQAREFNEAVGIDGVILTKVDAD  292 (336)
T ss_pred             CCCEEEEECCCccCCc--H---HHH-HHHHHHHHh-hCCceEEEeeccccc--hhHHHHHHHHHhcCCCCEEEEeeecCC
Confidence            3459999999973221  0   111 112333222 235888999999654  223333333332112357778999986


Q ss_pred             CcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHH
Q 031293          110 FPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRT  151 (162)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~  151 (162)
                      .....  .+...    ...+   .|+.+++  +|++++++..
T Consensus       293 ~~~G~--~ls~~----~~~~---~Pi~~i~--~Gq~v~Dl~~  323 (336)
T PRK14974        293 AKGGA--ALSIA----YVIG---KPILFLG--VGQGYDDLIP  323 (336)
T ss_pred             CCccH--HHHHH----HHHC---cCEEEEe--CCCChhhccc
Confidence            44321  11111    1122   4888887  7888877643

>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]

Probab=97.30  E-value=0.0002  Score=54.79  Aligned_cols=43  Identities=35%  Similarity=0.562  Sum_probs=38.0

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEeCCceEEEcCCCCccc
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFA   44 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~ivDtpG~~~~   44 (162)
                      +||+|.|+ ....||.+||.|+....+-+...+.+-||||.-..
T Consensus       330 TINaLvG~-KkVsVS~TPGkTKHFQTi~ls~~v~LCDCPGLVfP  372 (562)
T KOG1424|consen  330 TINALVGR-KKVSVSSTPGKTKHFQTIFLSPSVCLCDCPGLVFP  372 (562)
T ss_pred             HHHHHhcC-ceeeeecCCCCcceeEEEEcCCCceecCCCCcccc
Confidence            58999999 56779999999999999888888999999998443

>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]

Probab=97.26  E-value=0.00049  Score=47.83  Aligned_cols=62  Identities=21%  Similarity=0.314  Sum_probs=42.8

Q ss_pred             CceEEEcC-CCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhC-CceEEEEeccCC
Q 031293           31 TKLCLVDL-PGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQ-TKYQVVLTKTDT  108 (162)
Q Consensus        31 ~~~~ivDt-pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~-~~~ivv~nK~Dl  108 (162)
                      +.+.++|| +|.             +.+-+...   +++|.++.|+|++..--.....+-+...+.+ .++.+|+||.|-
T Consensus       134 ~e~VivDtEAGi-------------EHfgRg~~---~~vD~vivVvDpS~~sl~taeri~~L~~elg~k~i~~V~NKv~e  197 (255)
T COG3640         134 YEVVIVDTEAGI-------------EHFGRGTI---EGVDLVIVVVDPSYKSLRTAERIKELAEELGIKRIFVVLNKVDE  197 (255)
T ss_pred             CcEEEEecccch-------------hhhccccc---cCCCEEEEEeCCcHHHHHHHHHHHHHHHHhCCceEEEEEeeccc
Confidence            35889999 688             44444443   3459999999987543333344445555667 789999999985

>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]

Probab=97.18  E-value=0.00081  Score=47.52  Aligned_cols=51  Identities=16%  Similarity=0.179  Sum_probs=37.4

Q ss_pred             CceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhhh
Q 031293           97 TKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARF  159 (162)
Q Consensus        97 ~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~~  159 (162)
                      +|.+.++||+|-++-++..     +       -.....-+++||..+.+++++++.+-+-+.+
T Consensus       232 Vp~iyvLNkIdsISiEELd-----i-------i~~iphavpISA~~~wn~d~lL~~mweyL~L  282 (358)
T KOG1487|consen  232 VPCIYVLNKIDSISIEELD-----I-------IYTIPHAVPISAHTGWNFDKLLEKMWEYLKL  282 (358)
T ss_pred             eeeeeeecccceeeeeccc-----e-------eeeccceeecccccccchHHHHHHHhhcchh
Confidence            5789999999987544321     0       1133578899999999999999988765543

>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []

Probab=97.15  E-value=0.0011  Score=50.00  Aligned_cols=114  Identities=20%  Similarity=0.200  Sum_probs=65.5

Q ss_pred             CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCC--------CCCccHHHHHHHHHH-------
Q 031293           30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW--------GVKPRDHELISLMER-------   94 (162)
Q Consensus        30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~--------~~~~~~~~~~~~l~~-------   94 (162)
                      +..+.++|..|+             ....++++.-..+++.|+|+++-++        +-.....+-+.....       
T Consensus       235 ~~~~~~~DvGGq-------------r~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~  301 (389)
T PF00503_consen  235 SRKFRLIDVGGQ-------------RSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWF  301 (389)
T ss_dssp             TEEEEEEEETSS-------------GGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGG
T ss_pred             ccccceecCCCC-------------chhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCccc
Confidence            446999999999             2223344444456799999998532        112223333333322       


Q ss_pred             hCCceEEEEeccCCCCc--------------------HHHHHHHHHHHHHHHhcCC-----CCCCeEEeecCCCCCHHHH
Q 031293           95 SQTKYQVVLTKTDTVFP--------------------IDVARRAMQIEESLKANNS-----LVQPVMMVSSKSGAGIRSL  149 (162)
Q Consensus        95 ~~~~~ivv~nK~Dl~~~--------------------~~~~~~~~~~~~~~~~~~~-----~~~~i~~~Sa~~~~g~~~l  149 (162)
                      .+.|+++++||.|+..+                    .......+.+.+.+.....     +..-+..++|.+...+..+
T Consensus       302 ~~~~iil~lnK~D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v  381 (389)
T PF00503_consen  302 KNTPIILFLNKIDLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKV  381 (389)
T ss_dssp             TTSEEEEEEE-HHHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHH
T ss_pred             ccCceEEeeecHHHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHH
Confidence            15789999999997411                    1234444555544432211     2234557788887778877


Q ss_pred             HHHHHHh
Q 031293          150 RTVLSKI  156 (162)
Q Consensus       150 ~~~i~~~  156 (162)
                      +..+.+.
T Consensus       382 ~~~v~~~  388 (389)
T PF00503_consen  382 FNAVKDI  388 (389)
T ss_dssp             HHHHHHH
T ss_pred             HHHhcCc
Confidence            7777654

G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....

>PRK12288 GTPase RsgA; Reviewed

Probab=97.13  E-value=0.00091  Score=49.72  Aligned_cols=43  Identities=21%  Similarity=0.271  Sum_probs=32.7

Q ss_pred             ChhcccCCCCceeccCCCC-------cceEEEEEEeCCceEEEcCCCCccc
Q 031293            1 MLNALTRQWGVVRTSDKPG-------LTQTINFFKLGTKLCLVDLPGYGFA   44 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g-------~t~~~~~~~~~~~~~ivDtpG~~~~   44 (162)
                      |||+|.+. ...+++..++       ||+...++.+.....++||||+...
T Consensus       221 LiN~Ll~~-~~~~t~~is~~~~rGrHTT~~~~l~~l~~~~~liDTPGir~~  270 (347)
T PRK12288        221 LINALLPE-AEILVGDVSDNSGLGQHTTTAARLYHFPHGGDLIDSPGVREF  270 (347)
T ss_pred             HHHHhccc-cceeeccccCcCCCCcCceeeEEEEEecCCCEEEECCCCCcc
Confidence            68999988 4556666554       6888888888555679999999665

>PRK12289 GTPase RsgA; Reviewed

Probab=97.02  E-value=0.00055  Score=50.92  Aligned_cols=44  Identities=25%  Similarity=0.413  Sum_probs=35.0

Q ss_pred             ChhcccCCCCceeccCCCC-------cceEEEEEEeCCceEEEcCCCCcccc
Q 031293            1 MLNALTRQWGVVRTSDKPG-------LTQTINFFKLGTKLCLVDLPGYGFAY   45 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g-------~t~~~~~~~~~~~~~ivDtpG~~~~~   45 (162)
                      |||+|.+. ....++..+|       ||+....+.+.....++||||+....
T Consensus       188 LIN~L~~~-~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g~~liDTPG~~~~~  238 (352)
T PRK12289        188 LINRLIPD-VELRVGKVSGKLGRGRHTTRHVELFELPNGGLLADTPGFNQPD  238 (352)
T ss_pred             HHHHHcCc-cccccccccCCCCCCCCcCceeEEEECCCCcEEEeCCCccccc
Confidence            68999988 4677788888       89999888885446899999996543

>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=96.79  E-value=0.014  Score=45.85  Aligned_cols=96  Identities=14%  Similarity=0.199  Sum_probs=62.6

Q ss_pred             CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCc-eEEEEeccCCC
Q 031293           31 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDTV  109 (162)
Q Consensus        31 ~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~-~ivv~nK~Dl~  109 (162)
                      +++++..+|.-                +..++.-...+|+|+++||+..++.-.+.+++..+...++| ++.|++..|+.
T Consensus       113 RRiTflEcp~D----------------l~~miDvaKIaDLVlLlIdgnfGfEMETmEFLnil~~HGmPrvlgV~ThlDlf  176 (1077)
T COG5192         113 RRITFLECPSD----------------LHQMIDVAKIADLVLLLIDGNFGFEMETMEFLNILISHGMPRVLGVVTHLDLF  176 (1077)
T ss_pred             eEEEEEeChHH----------------HHHHHhHHHhhheeEEEeccccCceehHHHHHHHHhhcCCCceEEEEeecccc
Confidence            35778888832                22333333456999999999999988889999999988998 78999999998


Q ss_pred             C-cHHHHHHHHHHHHHHHhcCCCCCCeEEeecCC
Q 031293          110 F-PIDVARRAMQIEESLKANNSLVQPVMMVSSKS  142 (162)
Q Consensus       110 ~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~  142 (162)
                      . .+........+.-.+=..-..-...|.+|.+.
T Consensus       177 k~~stLr~~KKrlkhRfWtEiyqGaKlFylsgV~  210 (1077)
T COG5192         177 KNPSTLRSIKKRLKHRFWTEIYQGAKLFYLSGVE  210 (1077)
T ss_pred             cChHHHHHHHHHHhhhHHHHHcCCceEEEecccc
Confidence            4 33344333332211100001124778887655

>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]

Probab=96.74  E-value=0.0036  Score=42.07  Aligned_cols=109  Identities=14%  Similarity=0.158  Sum_probs=63.7

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHHHHHH-----hC--CceEEEE
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER-----SQ--TKYQVVL  103 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~~l~~-----~~--~~~ivv~  103 (162)
                      ++.++|..|+          +++..+..=|.+   .+.+.+.|+|-+...+-.. ..+.+.+..     .+  +|++...
T Consensus        76 RlqLwdIagQ----------erfg~mtrVyyk---ea~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vlla  142 (229)
T KOG4423|consen   76 RLQLWDIAGQ----------ERFGNMTRVYYK---EAHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLA  142 (229)
T ss_pred             HHHHhcchhh----------hhhcceEEEEec---CCcceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheecc
Confidence            4678888888          222222222333   3466777777554332211 122233321     13  5689999


Q ss_pred             eccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHh
Q 031293          104 TKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKI  156 (162)
Q Consensus       104 nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~  156 (162)
                      ||+|.-.. ...+.-..+.++..+++.  ..-+.+|++.+.++++..+.+.+.
T Consensus       143 nkCd~e~~-a~~~~~~~~d~f~kengf--~gwtets~Kenkni~Ea~r~lVe~  192 (229)
T KOG4423|consen  143 NKCDQEKS-AKNEATRQFDNFKKENGF--EGWTETSAKENKNIPEAQRELVEK  192 (229)
T ss_pred             chhccChH-hhhhhHHHHHHHHhccCc--cceeeeccccccChhHHHHHHHHH
Confidence            99997532 222223445555565543  678899999999999988887764

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=96.70  E-value=0.0017  Score=46.00  Aligned_cols=42  Identities=21%  Similarity=0.320  Sum_probs=29.2

Q ss_pred             ChhcccCCCCceeccCC-------CCcceEEEEEEeCCceEEEcCCCCccc
Q 031293            1 MLNALTRQWGVVRTSDK-------PGLTQTINFFKLGTKLCLVDLPGYGFA   44 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~-------~g~t~~~~~~~~~~~~~ivDtpG~~~~   44 (162)
                      |+|+|.+.. ..+++..       ++||+....+.++ ...++||||+...
T Consensus       136 LiN~L~~~~-~~~t~~i~~~~~~G~hTT~~~~l~~l~-~~~liDtPG~~~~  184 (245)
T TIGR00157       136 LINALDPSV-KQQVNDISSKLGLGKHTTTHVELFHFH-GGLIADTPGFNEF  184 (245)
T ss_pred             HHHHHhhhh-hccccceeccCCCCCCcCCceEEEEcC-CcEEEeCCCcccc
Confidence            689998873 3333332       3488888888774 4689999999554

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]

Probab=96.67  E-value=0.03  Score=43.97  Aligned_cols=94  Identities=26%  Similarity=0.304  Sum_probs=52.2

Q ss_pred             cCCCCcceEEEEEEe---C---CceEEEcCCCCcccc---cCHHHHHHHHHHHHHHHhcCcccceeEEE-eecCCCCC-c
Q 031293           15 SDKPGLTQTINFFKL---G---TKLCLVDLPGYGFAY---AKEEVKDAWEELVKEYVSTRVSLKRVCLL-IDTKWGVK-P   83 (162)
Q Consensus        15 ~~~~g~t~~~~~~~~---~---~~~~ivDtpG~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~vi~v-id~~~~~~-~   83 (162)
                      +-..|.|.......+   |   .+.++||.||.-...   ...+-.+....+.+.|+..-   +.+++. -|++-... .
T Consensus       390 sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NP---NAIILCIQDGSVDAERS  466 (980)
T KOG0447|consen  390 NVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNP---NAIILCIQDGSVDAERS  466 (980)
T ss_pred             cccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCC---CeEEEEeccCCcchhhh
Confidence            445566664443322   2   258999999974331   22223344455666665443   444444 45443211 1


Q ss_pred             cHHHHHHHHHHhCCceEEEEeccCCCCc
Q 031293           84 RDHELISLMERSQTKYQVVLTKTDTVFP  111 (162)
Q Consensus        84 ~~~~~~~~l~~~~~~~ivv~nK~Dl~~~  111 (162)
                      .-..+...++..+.+.|+|++|.|+..+
T Consensus       467 nVTDLVsq~DP~GrRTIfVLTKVDlAEk  494 (980)
T KOG0447|consen  467 IVTDLVSQMDPHGRRTIFVLTKVDLAEK  494 (980)
T ss_pred             hHHHHHHhcCCCCCeeEEEEeecchhhh
Confidence            1123344556678889999999998743

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=96.62  E-value=0.0042  Score=48.50  Aligned_cols=84  Identities=14%  Similarity=0.126  Sum_probs=49.2

Q ss_pred             cceeEEEeecCCCC--CccHHHHHHHHHHh-----CCceEEEEeccCCCCcHHH--HHHHHHHHHHHHhcCCCCCCeEEe
Q 031293           68 LKRVCLLIDTKWGV--KPRDHELISLMERS-----QTKYQVVLTKTDTVFPIDV--ARRAMQIEESLKANNSLVQPVMMV  138 (162)
Q Consensus        68 ~~~vi~vid~~~~~--~~~~~~~~~~l~~~-----~~~~ivv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~  138 (162)
                      +++++++-+..++-  ......|+=.++..     ++|+|+|.||.|..+....  +....-+.....+    ....+.|
T Consensus        80 A~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~E----iEtciec  155 (625)
T KOG1707|consen   80 ADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAE----IETCIEC  155 (625)
T ss_pred             cCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHH----HHHHHhh
Confidence            47888777655422  22222334344432     5899999999998743322  2212223222222    1366789


Q ss_pred             ecCCCCCHHHHHHHHHH
Q 031293          139 SSKSGAGIRSLRTVLSK  155 (162)
Q Consensus       139 Sa~~~~g~~~l~~~i~~  155 (162)
                      ||++-.++.+++..-..
T Consensus       156 SA~~~~n~~e~fYyaqK  172 (625)
T KOG1707|consen  156 SALTLANVSELFYYAQK  172 (625)
T ss_pred             hhhhhhhhHhhhhhhhh
Confidence            99999888888876554

>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]

Probab=96.45  E-value=0.025  Score=40.36  Aligned_cols=61  Identities=15%  Similarity=0.204  Sum_probs=41.3

Q ss_pred             ceEEEcCC-CCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHHHHHHhCCceEEEEeccCCC
Q 031293           32 KLCLVDLP-GYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERSQTKYQVVLTKTDTV  109 (162)
Q Consensus        32 ~~~ivDtp-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~~l~~~~~~~ivv~nK~Dl~  109 (162)
                      ++.++|+| |.|=                ..+....++|.+++|-.++. +...| ...++.++..++|..+|+||.+.-
T Consensus       165 ~~~IIDsaaG~gC----------------pVi~sl~~aD~ai~VTEPTp-~glhD~kr~~el~~~f~ip~~iViNr~~~g  227 (284)
T COG1149         165 DLLIIDSAAGTGC----------------PVIASLKGADLAILVTEPTP-FGLHDLKRALELVEHFGIPTGIVINRYNLG  227 (284)
T ss_pred             ceeEEecCCCCCC----------------hHHHhhccCCEEEEEecCCc-cchhHHHHHHHHHHHhCCceEEEEecCCCC
Confidence            57888885 6632                12233345699999977763 33334 345577788899999999999653

>KOG3905 consensus Dynein light intermediate chain [Cell motility]

Probab=96.31  E-value=0.025  Score=41.54  Aligned_cols=60  Identities=17%  Similarity=0.034  Sum_probs=44.1

Q ss_pred             HhCCceEEEEeccCCCC----c-HH----HHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHh
Q 031293           94 RSQTKYQVVLTKTDTVF----P-ID----VARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKI  156 (162)
Q Consensus        94 ~~~~~~ivv~nK~Dl~~----~-~~----~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~  156 (162)
                      ..++|+++|++|+|.++    + +.    ..-+..++++++=.++.   ..+++|++...+++-|..+|...
T Consensus       220 NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~Ga---aLiyTSvKE~KNidllyKYivhr  288 (473)
T KOG3905|consen  220 NLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGA---ALIYTSVKETKNIDLLYKYIVHR  288 (473)
T ss_pred             cCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCc---eeEEeecccccchHHHHHHHHHH
Confidence            34799999999999842    1 11    22333556666666665   88999999999999999998753

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=96.27  E-value=0.058  Score=41.51  Aligned_cols=70  Identities=21%  Similarity=0.251  Sum_probs=37.6

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCc-eEEEEeccCCCC
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDTVF  110 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~-~ivv~nK~Dl~~  110 (162)
                      .+.++||||....  .    +..-..+... .....++.+++|+|+..+  .......+.... ..+ .-+|+||.|...
T Consensus       177 DvVIIDTAGr~~~--d----~~lm~El~~l-~~~~~pdevlLVvda~~g--q~av~~a~~F~~-~l~i~gvIlTKlD~~a  246 (437)
T PRK00771        177 DVIIVDTAGRHAL--E----EDLIEEMKEI-KEAVKPDEVLLVIDATIG--QQAKNQAKAFHE-AVGIGGIIITKLDGTA  246 (437)
T ss_pred             CEEEEECCCcccc--h----HHHHHHHHHH-HHHhcccceeEEEecccc--HHHHHHHHHHHh-cCCCCEEEEecccCCC
Confidence            6899999997221  0    1111112222 122245899999999765  222223333222 234 367889999754


Q ss_pred             c
Q 031293          111 P  111 (162)
Q Consensus       111 ~  111 (162)
                      .
T Consensus       247 ~  247 (437)
T PRK00771        247 K  247 (437)
T ss_pred             c
Confidence            3

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=96.27  E-value=0.015  Score=39.76  Aligned_cols=72  Identities=25%  Similarity=0.314  Sum_probs=38.2

Q ss_pred             CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHH-HHHHHHHhCCceEEEEeccCCC
Q 031293           31 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHE-LISLMERSQTKYQVVLTKTDTV  109 (162)
Q Consensus        31 ~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~-~~~~l~~~~~~~ivv~nK~Dl~  109 (162)
                      ..+.++||||.....  ...    ...+++++... ..+-+++|+++..+.  .+.. ...+....+.. -+++||.|..
T Consensus        84 ~D~vlIDT~Gr~~~d--~~~----~~el~~~~~~~-~~~~~~LVlsa~~~~--~~~~~~~~~~~~~~~~-~lIlTKlDet  153 (196)
T PF00448_consen   84 YDLVLIDTAGRSPRD--EEL----LEELKKLLEAL-NPDEVHLVLSATMGQ--EDLEQALAFYEAFGID-GLILTKLDET  153 (196)
T ss_dssp             SSEEEEEE-SSSSTH--HHH----HHHHHHHHHHH-SSSEEEEEEEGGGGG--HHHHHHHHHHHHSSTC-EEEEESTTSS
T ss_pred             CCEEEEecCCcchhh--HHH----HHHHHHHhhhc-CCccceEEEecccCh--HHHHHHHHHhhcccCc-eEEEEeecCC
Confidence            358999999983321  111    12233333333 347889999987642  2222 23333333333 5568999986


Q ss_pred             CcH
Q 031293          110 FPI  112 (162)
Q Consensus       110 ~~~  112 (162)
                      ...
T Consensus       154 ~~~  156 (196)
T PF00448_consen  154 ARL  156 (196)
T ss_dssp             STT
T ss_pred             CCc
Confidence            433

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>cd03114 ArgK-like The function of this protein family is unkown

Probab=96.18  E-value=0.023  Score=37.07  Aligned_cols=58  Identities=16%  Similarity=0.109  Sum_probs=29.0

Q ss_pred             CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccC
Q 031293           30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTD  107 (162)
Q Consensus        30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~D  107 (162)
                      +..+.++||||.+.             .....+   ..+|.++++..+..    .+..-+....-...--++++||+|
T Consensus        91 ~~D~iiIDtaG~~~-------------~~~~~~---~~Ad~~ivv~tpe~----~D~y~~~k~~~~~~~~~~~~~k~~  148 (148)
T cd03114          91 GFDVIIVETVGVGQ-------------SEVDIA---SMADTTVVVMAPGA----GDDIQAIKAGIMEIADIVVVNKAD  148 (148)
T ss_pred             CCCEEEEECCccCh-------------hhhhHH---HhCCEEEEEECCCc----hhHHHHhhhhHhhhcCEEEEeCCC
Confidence            34688888888721             111222   23477777776652    111111111111223477788887

The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.

>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins

Probab=96.15  E-value=0.021  Score=44.27  Aligned_cols=60  Identities=13%  Similarity=0.020  Sum_probs=44.8

Q ss_pred             hCCceEEEEeccCCCCc---------HHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293           95 SQTKYQVVLTKTDTVFP---------IDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  157 (162)
Q Consensus        95 ~~~~~ivv~nK~Dl~~~---------~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~  157 (162)
                      .++|++||++|+|.+..         ....-+.+.++.++-.++.   ..+++|++...+++-|+.+|...+
T Consensus       195 lGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGA---sL~yts~~~~~n~~~L~~yi~h~l  263 (472)
T PF05783_consen  195 LGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGA---SLIYTSVKEEKNLDLLYKYILHRL  263 (472)
T ss_pred             cCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCC---eEEEeeccccccHHHHHHHHHHHh
Confidence            37899999999997631         1223444566666666765   889999999999999998887643

The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].

>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily

Probab=96.14  E-value=0.1  Score=33.55  Aligned_cols=76  Identities=11%  Similarity=0.216  Sum_probs=41.6

Q ss_pred             CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHh--CCceEEEEeccCC
Q 031293           31 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERS--QTKYQVVLTKTDT  108 (162)
Q Consensus        31 ~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~--~~~~ivv~nK~Dl  108 (162)
                      ..+.++|+|+. .           .......+   ..+|.+++++++...-.......++.+...  ..++.+|+|+.+.
T Consensus        45 yd~VIiD~p~~-~-----------~~~~~~~l---~~aD~vviv~~~~~~s~~~~~~~l~~l~~~~~~~~~~lVvN~~~~  109 (139)
T cd02038          45 YDYIIIDTGAG-I-----------SDNVLDFF---LAADEVIVVTTPEPTSITDAYALIKKLAKQLRVLNFRVVVNRAES  109 (139)
T ss_pred             CCEEEEECCCC-C-----------CHHHHHHH---HhCCeEEEEcCCChhHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence            56999999864 1           11122222   234999999888643212223344455332  3567899999974


Q ss_pred             CCcHHHHHHHHHHHH
Q 031293          109 VFPIDVARRAMQIEE  123 (162)
Q Consensus       109 ~~~~~~~~~~~~~~~  123 (162)
                        ..+..+..+.+.+
T Consensus       110 --~~~~~~~~~~~~~  122 (139)
T cd02038         110 --PKEGKKVFKRLSN  122 (139)
T ss_pred             --HHHHHHHHHHHHH
Confidence              2333334444443

It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.

>TIGR00092 GTP-binding protein YchF

Probab=96.14  E-value=0.0041  Score=46.46  Aligned_cols=71  Identities=15%  Similarity=0.057  Sum_probs=46.4

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEE--EEe-C-----------------CceEEEcCCCCcccc-cCHHHHHHHHHHHH
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINF--FKL-G-----------------TKLCLVDLPGYGFAY-AKEEVKDAWEELVK   59 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~--~~~-~-----------------~~~~ivDtpG~~~~~-~~~~~~~~~~~~~~   59 (162)
                      |||+||+. ....++++|.+|...+.  ... +                 ..+.++|.||.-... .+       ..+-.
T Consensus        18 lfnaLT~~-~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs~g-------~Glgn   89 (368)
T TIGR00092        18 LFAATTNL-LGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGASKG-------EGLGN   89 (368)
T ss_pred             HHHHHhCC-CccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchhcc-------cCcch
Confidence            68999999 33378899999876554  222 1                 147899999984331 11       11223


Q ss_pred             HHHhcCcccceeEEEeecCC
Q 031293           60 EYVSTRVSLKRVCLLIDTKW   79 (162)
Q Consensus        60 ~~~~~~~~~~~vi~vid~~~   79 (162)
                      .++...+.+|+++.|+++.+
T Consensus        90 ~fL~~ir~~d~l~hVvr~f~  109 (368)
T TIGR00092        90 QFLANIREVDIIQHVVRCFE  109 (368)
T ss_pred             HHHHHHHhCCEEEEEEeCCC
Confidence            44445566799999999853

This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.

>cd03112 CobW_like The function of this protein family is unkown

Probab=96.11  E-value=0.013  Score=38.55  Aligned_cols=69  Identities=20%  Similarity=0.218  Sum_probs=37.2

Q ss_pred             CceEEEcCCCCcccccCHHHHHHHHHH-HHHHHhcCcccceeEEEeecCCCCCcc--HHHHHHHHHHhCCceEEEEeccC
Q 031293           31 TKLCLVDLPGYGFAYAKEEVKDAWEEL-VKEYVSTRVSLKRVCLLIDTKWGVKPR--DHELISLMERSQTKYQVVLTKTD  107 (162)
Q Consensus        31 ~~~~ivDtpG~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~vi~vid~~~~~~~~--~~~~~~~l~~~~~~~ivv~nK~D  107 (162)
                      .+..++||||....   .   ...+.+ ....+.....++.++.++|+.......  ...+...+.   .-=++++||+|
T Consensus        87 ~d~I~IEt~G~~~p---~---~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~---~ad~ivlnk~d  157 (158)
T cd03112          87 FDRIVIETTGLADP---G---PVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIA---FADRILLNKTD  157 (158)
T ss_pred             CCEEEEECCCcCCH---H---HHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHH---HCCEEEEeccc
Confidence            45789999998432   1   111111 223444555679999999986432111  111111121   12366889999


Q ss_pred             C
Q 031293          108 T  108 (162)
Q Consensus       108 l  108 (162)
                      +
T Consensus       158 l  158 (158)
T cd03112         158 L  158 (158)
T ss_pred             C
Confidence            5

The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.

>TIGR03348 VI_IcmF type VI secretion protein IcmF

Probab=96.06  E-value=0.038  Score=47.69  Aligned_cols=81  Identities=19%  Similarity=0.162  Sum_probs=49.3

Q ss_pred             CCceEEEcCCCCcccc--cCHHHHHHHHHHHHHHH--hcCcccceeEEEeecCCCCCccHH---HHHH-------HHH-H
Q 031293           30 GTKLCLVDLPGYGFAY--AKEEVKDAWEELVKEYV--STRVSLKRVCLLIDTKWGVKPRDH---ELIS-------LME-R   94 (162)
Q Consensus        30 ~~~~~ivDtpG~~~~~--~~~~~~~~~~~~~~~~~--~~~~~~~~vi~vid~~~~~~~~~~---~~~~-------~l~-~   94 (162)
                      .++-+++||+|.-...  ........|..++....  +..+.+++||+++|..+-......   .+..       .+. .
T Consensus       160 ~~~avliDtaG~y~~~~~~~~~~~~~W~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~  239 (1169)
T TIGR03348       160 TDEAVLIDTAGRYTTQDSDPEEDAAAWLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQ  239 (1169)
T ss_pred             cCCEEEEcCCCccccCCCcccccHHHHHHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            4458899999953321  12234556777766443  334568999999998653322111   1112       121 1


Q ss_pred             --hCCceEEEEeccCCCC
Q 031293           95 --SQTKYQVVLTKTDTVF  110 (162)
Q Consensus        95 --~~~~~ivv~nK~Dl~~  110 (162)
                        ...|+.+++||+|++.
T Consensus       240 lg~~~PVYvv~Tk~Dll~  257 (1169)
T TIGR03348       240 LGARFPVYLVLTKADLLA  257 (1169)
T ss_pred             hCCCCCEEEEEecchhhc
Confidence              2589999999999873

Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.

>PRK00098 GTPase RsgA; Reviewed

Probab=96.06  E-value=0.011  Score=43.22  Aligned_cols=42  Identities=26%  Similarity=0.452  Sum_probs=29.7

Q ss_pred             ChhcccCCCCceeccCCCC-------cceEEEEEEeCCceEEEcCCCCcc
Q 031293            1 MLNALTRQWGVVRTSDKPG-------LTQTINFFKLGTKLCLVDLPGYGF   43 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g-------~t~~~~~~~~~~~~~ivDtpG~~~   43 (162)
                      |+|+|.+.. ...++..++       ||+....+.......++||||+..
T Consensus       180 lin~l~~~~-~~~~g~v~~~~~~G~htT~~~~~~~~~~~~~~~DtpG~~~  228 (298)
T PRK00098        180 LLNALAPDL-ELKTGEISEALGRGKHTTTHVELYDLPGGGLLIDTPGFSS  228 (298)
T ss_pred             HHHHHhCCc-CCCCcceeccCCCCCcccccEEEEEcCCCcEEEECCCcCc
Confidence            688998873 344444432       777777777765679999999854

>KOG2484 consensus GTPase [General function prediction only]

Probab=95.98  E-value=0.002  Score=48.07  Aligned_cols=42  Identities=31%  Similarity=0.530  Sum_probs=37.3

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEeCCceEEEcCCCCcc
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGF   43 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~ivDtpG~~~   43 (162)
                      +||+|..+ ..+-+++.||.|+.+....++.++.++|.||.-.
T Consensus       268 vINsL~~~-k~C~vg~~pGvT~smqeV~Ldk~i~llDsPgiv~  309 (435)
T KOG2484|consen  268 VINSLKRR-KACNVGNVPGVTRSMQEVKLDKKIRLLDSPGIVP  309 (435)
T ss_pred             HHHHHHHh-ccccCCCCccchhhhhheeccCCceeccCCceee
Confidence            58999888 5788999999999999988988899999999833

>COG1162 Predicted GTPases [General function prediction only]

Probab=95.91  E-value=0.016  Score=42.08  Aligned_cols=44  Identities=23%  Similarity=0.341  Sum_probs=30.1

Q ss_pred             ChhcccCCCCce--eccC----CCCcceEEEEEEeCCceEEEcCCCCccc
Q 031293            1 MLNALTRQWGVV--RTSD----KPGLTQTINFFKLGTKLCLVDLPGYGFA   44 (162)
Q Consensus         1 lin~L~~~~~~~--~~~~----~~g~t~~~~~~~~~~~~~ivDtpG~~~~   44 (162)
                      |+|+|.+.....  .+|.    =..||+...++.+...-.++||||+...
T Consensus       180 LiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG~iiDTPGf~~~  229 (301)
T COG1162         180 LINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGGWIIDTPGFRSL  229 (301)
T ss_pred             HHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCCEEEeCCCCCcc
Confidence            688888763221  1222    2457888888988655899999999554

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=95.72  E-value=0.12  Score=34.42  Aligned_cols=73  Identities=23%  Similarity=0.144  Sum_probs=38.8

Q ss_pred             CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHH-HHhCCceEEEEeccCC
Q 031293           30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLM-ERSQTKYQVVLTKTDT  108 (162)
Q Consensus        30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l-~~~~~~~ivv~nK~Dl  108 (162)
                      +..+.++||||....  ..   + .-..+..+.. ....+.+++|+|+..+.  ...+....+ +..+ ..-+++||.|.
T Consensus        82 ~~d~viiDt~g~~~~--~~---~-~l~~l~~l~~-~~~~~~~~lVv~~~~~~--~~~~~~~~~~~~~~-~~~viltk~D~  151 (173)
T cd03115          82 NFDVVIVDTAGRLQI--DE---N-LMEELKKIKR-VVKPDEVLLVVDAMTGQ--DAVNQAKAFNEALG-ITGVILTKLDG  151 (173)
T ss_pred             CCCEEEEECcccchh--hH---H-HHHHHHHHHh-hcCCCeEEEEEECCCCh--HHHHHHHHHHhhCC-CCEEEEECCcC
Confidence            345899999997321  00   0 1111222221 22358999999986432  222333333 3334 35777799998


Q ss_pred             CCcH
Q 031293          109 VFPI  112 (162)
Q Consensus       109 ~~~~  112 (162)
                      ....
T Consensus       152 ~~~~  155 (173)
T cd03115         152 DARG  155 (173)
T ss_pred             CCCc
Confidence            7433

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>TIGR00959 ffh signal recognition particle protein

Probab=95.69  E-value=0.16  Score=39.09  Aligned_cols=70  Identities=21%  Similarity=0.185  Sum_probs=37.1

Q ss_pred             CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCc-eEEEEeccCCC
Q 031293           31 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDTV  109 (162)
Q Consensus        31 ~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~-~ivv~nK~Dl~  109 (162)
                      ..+.++||||....  ....    -..+..+.. ....+.+++|+|+..+  ............ .++ .=+++||.|..
T Consensus       183 ~DvVIIDTaGr~~~--d~~l----~~eL~~i~~-~~~p~e~lLVvda~tg--q~~~~~a~~f~~-~v~i~giIlTKlD~~  252 (428)
T TIGR00959       183 FDVVIVDTAGRLQI--DEEL----MEELAAIKE-ILNPDEILLVVDAMTG--QDAVNTAKTFNE-RLGLTGVVLTKLDGD  252 (428)
T ss_pred             CCEEEEeCCCcccc--CHHH----HHHHHHHHH-hhCCceEEEEEeccch--HHHHHHHHHHHh-hCCCCEEEEeCccCc
Confidence            45899999996221  1111    111222222 2235788999998643  222333333332 223 46778999965


Q ss_pred             C
Q 031293          110 F  110 (162)
Q Consensus       110 ~  110 (162)
                      .
T Consensus       253 ~  253 (428)
T TIGR00959       253 A  253 (428)
T ss_pred             c
Confidence            3

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>COG0523 Putative GTPases (G3E family) [General function prediction only]

Probab=95.66  E-value=0.22  Score=36.88  Aligned_cols=97  Identities=19%  Similarity=0.216  Sum_probs=51.9

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHH-HHHhcCcccceeEEEeecCCCCCccHHHHHHHH-HHhCCceEEEEeccCCC
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVK-EYVSTRVSLKRVCLLIDTKWGVKPRDHELISLM-ERSQTKYQVVLTKTDTV  109 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l-~~~~~~~ivv~nK~Dl~  109 (162)
                      ...+|-|.|....   .+.-   ..+.. ..+...-..|.++-|+|+......... ..+.+ .....-=++++||.|++
T Consensus        86 D~ivIEtTGlA~P---~pv~---~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~-~~~~~~~Qia~AD~ivlNK~Dlv  158 (323)
T COG0523          86 DRLVIETTGLADP---APVI---QTFLTDPELADGVRLDGVVTVVDAAHFLEGLDA-IAELAEDQLAFADVIVLNKTDLV  158 (323)
T ss_pred             CEEEEeCCCCCCC---HHHH---HHhccccccccceeeceEEEEEeHHHhhhhHHH-HHHHHHHHHHhCcEEEEecccCC
Confidence            4788999998553   1111   11222 233344456899999999764322221 11111 11122237888999999


Q ss_pred             CcHHHHHHHHHHHHHHHhcCCCCCCeEEeec
Q 031293          110 FPIDVARRAMQIEESLKANNSLVQPVMMVSS  140 (162)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa  140 (162)
                      +......    +++.+...++ ..+++.+|.
T Consensus       159 ~~~~l~~----l~~~l~~lnp-~A~i~~~~~  184 (323)
T COG0523         159 DAEELEA----LEARLRKLNP-RARIIETSY  184 (323)
T ss_pred             CHHHHHH----HHHHHHHhCC-CCeEEEccc
Confidence            8775433    3333333332 257777765

>PRK10867 signal recognition particle protein; Provisional

Probab=95.60  E-value=0.14  Score=39.48  Aligned_cols=70  Identities=21%  Similarity=0.228  Sum_probs=36.5

Q ss_pred             CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCc-eEEEEeccCCC
Q 031293           31 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDTV  109 (162)
Q Consensus        31 ~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~-~ivv~nK~Dl~  109 (162)
                      ..+.++||||....  ....    ...+...... ...+.+++|+|+..+  .......+...+ ..+ .-+|+||.|..
T Consensus       184 ~DvVIIDTaGrl~~--d~~l----m~eL~~i~~~-v~p~evllVlda~~g--q~av~~a~~F~~-~~~i~giIlTKlD~~  253 (433)
T PRK10867        184 YDVVIVDTAGRLHI--DEEL----MDELKAIKAA-VNPDEILLVVDAMTG--QDAVNTAKAFNE-ALGLTGVILTKLDGD  253 (433)
T ss_pred             CCEEEEeCCCCccc--CHHH----HHHHHHHHHh-hCCCeEEEEEecccH--HHHHHHHHHHHh-hCCCCEEEEeCccCc
Confidence            45899999996221  1111    1112222111 234777999998643  222333333332 233 36777999965


Q ss_pred             C
Q 031293          110 F  110 (162)
Q Consensus       110 ~  110 (162)
                      .
T Consensus       254 ~  254 (433)
T PRK10867        254 A  254 (433)
T ss_pred             c
Confidence            3

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=95.44  E-value=0.16  Score=36.64  Aligned_cols=71  Identities=20%  Similarity=0.247  Sum_probs=37.3

Q ss_pred             CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCc-eEEEEeccCCC
Q 031293           31 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDTV  109 (162)
Q Consensus        31 ~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~-~ivv~nK~Dl~  109 (162)
                      ..+.++||||.....  ..   .++ .+.+++... ..+.+++|+++.... ....+.++....  .+ --+++||.|..
T Consensus       155 ~D~ViIDt~Gr~~~~--~~---~l~-el~~~~~~~-~~~~~~LVl~a~~~~-~d~~~~~~~f~~--~~~~~~I~TKlDet  224 (270)
T PRK06731        155 VDYILIDTAGKNYRA--SE---TVE-EMIETMGQV-EPDYICLTLSASMKS-KDMIEIITNFKD--IHIDGIVFTKFDET  224 (270)
T ss_pred             CCEEEEECCCCCcCC--HH---HHH-HHHHHHhhh-CCCeEEEEEcCccCH-HHHHHHHHHhCC--CCCCEEEEEeecCC
Confidence            368999999983211  11   111 122333322 346788999886431 111223333332  33 36777999987


Q ss_pred             Cc
Q 031293          110 FP  111 (162)
Q Consensus       110 ~~  111 (162)
                      ..
T Consensus       225 ~~  226 (270)
T PRK06731        225 AS  226 (270)
T ss_pred             CC
Confidence            53

>KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]

Probab=95.39  E-value=0.0049  Score=49.52  Aligned_cols=77  Identities=19%  Similarity=0.339  Sum_probs=43.6

Q ss_pred             ceEEEcCCCCcccc---cCHHHHHHHHHHHHHHHhcCcccceeEEEee-cCCCC-CccHHHHHHHHHHhCCceEEEEecc
Q 031293           32 KLCLVDLPGYGFAY---AKEEVKDAWEELVKEYVSTRVSLKRVCLLID-TKWGV-KPRDHELISLMERSQTKYQVVLTKT  106 (162)
Q Consensus        32 ~~~ivDtpG~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid-~~~~~-~~~~~~~~~~l~~~~~~~ivv~nK~  106 (162)
                      .++++|.||.-...   .+.+.......++..|+...   .++++.+. ++..+ +.....+....+..+.+.+-|++|.
T Consensus       133 ~lTLvDlPG~tkvpv~dqp~di~~qI~~mi~~yi~~~---~~iILav~~an~d~ats~alkiarevDp~g~RTigvitK~  209 (657)
T KOG0446|consen  133 NLTLVDLPGLTKVPVADQPDDIEEEIKSMIEEYIEKP---NRIILAVTPANSDIATSPALVVAREVDPGGSRTLEVITKF  209 (657)
T ss_pred             hhhhcCCCCCcccccCCCCccHHHHHHHHHHHhcccc---chhhhhccchhhhhhcCHHHHHHHhhCCCccchhHHhhhH
Confidence            48999999985543   34445566677777777655   34443333 33222 2222333344444455667777777


Q ss_pred             CCCCc
Q 031293          107 DTVFP  111 (162)
Q Consensus       107 Dl~~~  111 (162)
                      |+.++
T Consensus       210 Dlmdk  214 (657)
T KOG0446|consen  210 DFMDK  214 (657)
T ss_pred             Hhhhc
Confidence            76543

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=95.33  E-value=0.28  Score=37.22  Aligned_cols=70  Identities=11%  Similarity=0.251  Sum_probs=37.1

Q ss_pred             CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHh-CCc-eEEEEeccCC
Q 031293           31 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERS-QTK-YQVVLTKTDT  108 (162)
Q Consensus        31 ~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~-~~~-~ivv~nK~Dl  108 (162)
                      ..+.+|||||.....      ...-..+..+.... ..+.+++|+++..    ...+..+.+... ..+ --+++||.|.
T Consensus       286 ~D~VLIDTAGr~~~d------~~~l~EL~~l~~~~-~p~~~~LVLsag~----~~~d~~~i~~~f~~l~i~glI~TKLDE  354 (407)
T PRK12726        286 VDHILIDTVGRNYLA------EESVSEISAYTDVV-HPDLTCFTFSSGM----KSADVMTILPKLAEIPIDGFIITKMDE  354 (407)
T ss_pred             CCEEEEECCCCCccC------HHHHHHHHHHhhcc-CCceEEEECCCcc----cHHHHHHHHHhcCcCCCCEEEEEcccC
Confidence            468999999983211      11112233333322 3466677776632    122333444333 244 3777899998


Q ss_pred             CCc
Q 031293          109 VFP  111 (162)
Q Consensus       109 ~~~  111 (162)
                      ...
T Consensus       355 T~~  357 (407)
T PRK12726        355 TTR  357 (407)
T ss_pred             CCC
Confidence            643

>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain

Probab=95.28  E-value=0.11  Score=36.36  Aligned_cols=46  Identities=20%  Similarity=0.167  Sum_probs=30.5

Q ss_pred             ChhcccCCC-CceeccCCCCcceEEEEEEe------CCceEEEcCCCCccccc
Q 031293            1 MLNALTRQW-GVVRTSDKPGLTQTINFFKL------GTKLCLVDLPGYGFAYA   46 (162)
Q Consensus         1 lin~L~~~~-~~~~~~~~~g~t~~~~~~~~------~~~~~ivDtpG~~~~~~   46 (162)
                      |+|.|++.. ........+.+|+.+-....      +..+.++||||.+....
T Consensus        23 llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~   75 (224)
T cd01851          23 LLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRER   75 (224)
T ss_pred             HHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCcccc
Confidence            589999883 23333445677876665422      35699999999976543

Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein

>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell

Probab=95.22  E-value=0.2  Score=33.16  Aligned_cols=63  Identities=14%  Similarity=0.123  Sum_probs=38.7

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCc-eEEEEeccCCC
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDTV  109 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~-~ivv~nK~Dl~  109 (162)
                      .+.++||||..            .......+   ..+|.+++++++...-.......++.+...+.+ ..+++|+.|.-
T Consensus        64 d~viiD~p~~~------------~~~~~~~l---~~ad~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~iv~N~~~~~  127 (179)
T cd02036          64 DYILIDSPAGI------------ERGFITAI---APADEALLVTTPEISSLRDADRVKGLLEALGIKVVGVIVNRVRPD  127 (179)
T ss_pred             CEEEEECCCCC------------cHHHHHHH---HhCCcEEEEeCCCcchHHHHHHHHHHHHHcCCceEEEEEeCCccc
Confidence            59999998641            11122222   345899999888753322233455566555544 67899999864

The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.

>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]

Probab=95.20  E-value=0.3  Score=35.05  Aligned_cols=69  Identities=10%  Similarity=0.191  Sum_probs=42.8

Q ss_pred             CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCC-------CCccH-HHHHHHHHHh------
Q 031293           30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG-------VKPRD-HELISLMERS------   95 (162)
Q Consensus        30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~-------~~~~~-~~~~~~l~~~------   95 (162)
                      ..+|...|..|+             ....+++++-.+.+..++||+.+++-       .+... .+.+...+..      
T Consensus       201 kv~FhMfDVGGQ-------------RDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL  267 (379)
T KOG0099|consen  201 KVNFHMFDVGGQ-------------RDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWL  267 (379)
T ss_pred             ccceeeeccCCc-------------hhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHH
Confidence            345888899998             44445555555666889999887641       22211 2223322221      


Q ss_pred             -CCceEEEEeccCCCCc
Q 031293           96 -QTKYQVVLTKTDTVFP  111 (162)
Q Consensus        96 -~~~~ivv~nK~Dl~~~  111 (162)
                       .+.+|+.+||.|++.+
T Consensus       268 ~tisvIlFLNKqDllae  284 (379)
T KOG0099|consen  268 RTISVILFLNKQDLLAE  284 (379)
T ss_pred             hhhheeEEecHHHHHHH
Confidence             3669999999998743

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=95.15  E-value=0.51  Score=36.33  Aligned_cols=93  Identities=14%  Similarity=0.182  Sum_probs=45.9

Q ss_pred             CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCce-EEEEeccCC
Q 031293           30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKY-QVVLTKTDT  108 (162)
Q Consensus        30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~-ivv~nK~Dl  108 (162)
                      +..+.+|||||....  ....    ...+.+++.......-+++|+++.... ....+....+.  ..++ -+++||.|.
T Consensus       299 ~~DlVlIDt~G~~~~--d~~~----~~~L~~ll~~~~~~~~~~LVl~a~~~~-~~l~~~~~~f~--~~~~~~vI~TKlDe  369 (424)
T PRK05703        299 DCDVILIDTAGRSQR--DKRL----IEELKALIEFSGEPIDVYLVLSATTKY-EDLKDIYKHFS--RLPLDGLIFTKLDE  369 (424)
T ss_pred             CCCEEEEeCCCCCCC--CHHH----HHHHHHHHhccCCCCeEEEEEECCCCH-HHHHHHHHHhC--CCCCCEEEEecccc
Confidence            346999999998321  1111    122334443222235667788886431 11112223332  2333 688899997


Q ss_pred             CCcHHHHHHHHHHHHHHHhcCCCCCCeEEeec
Q 031293          109 VFPIDVARRAMQIEESLKANNSLVQPVMMVSS  140 (162)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa  140 (162)
                      .....  .    +.+.+...+   .|+.+++.
T Consensus       370 t~~~G--~----i~~~~~~~~---lPv~yit~  392 (424)
T PRK05703        370 TSSLG--S----ILSLLIESG---LPISYLTN  392 (424)
T ss_pred             ccccc--H----HHHHHHHHC---CCEEEEeC
Confidence            53322  2    222233333   37777763

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=95.14  E-value=0.29  Score=36.95  Aligned_cols=73  Identities=14%  Similarity=0.124  Sum_probs=38.0

Q ss_pred             CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHh-CC-------ceEE
Q 031293           30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERS-QT-------KYQV  101 (162)
Q Consensus        30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~-~~-------~~iv  101 (162)
                      +..+.+|||||.....      ......+.. +.......-.++|+++..+..... +.+...... +.       .--+
T Consensus       215 ~~DlVLIDTaG~~~~d------~~l~e~La~-L~~~~~~~~~lLVLsAts~~~~l~-evi~~f~~~~~~p~~~~~~~~~~  286 (374)
T PRK14722        215 NKHMVLIDTIGMSQRD------RTVSDQIAM-LHGADTPVQRLLLLNATSHGDTLN-EVVQAYRSAAGQPKAALPDLAGC  286 (374)
T ss_pred             CCCEEEEcCCCCCccc------HHHHHHHHH-HhccCCCCeEEEEecCccChHHHH-HHHHHHHHhhcccccccCCCCEE
Confidence            3469999999983210      111122222 223333456788999876543322 222222221 22       2367


Q ss_pred             EEeccCCCC
Q 031293          102 VLTKTDTVF  110 (162)
Q Consensus       102 v~nK~Dl~~  110 (162)
                      ++||.|...
T Consensus       287 I~TKlDEt~  295 (374)
T PRK14722        287 ILTKLDEAS  295 (374)
T ss_pred             EEeccccCC
Confidence            889999764

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=95.12  E-value=0.0078  Score=39.78  Aligned_cols=44  Identities=25%  Similarity=0.304  Sum_probs=24.4

Q ss_pred             ChhcccCCCCce--eccCC----CCcceEEEEEEeCCceEEEcCCCCccc
Q 031293            1 MLNALTRQWGVV--RTSDK----PGLTQTINFFKLGTKLCLVDLPGYGFA   44 (162)
Q Consensus         1 lin~L~~~~~~~--~~~~~----~g~t~~~~~~~~~~~~~ivDtpG~~~~   44 (162)
                      |+|+|.+.....  .+|..    ..||+....+.+.....++||||+...
T Consensus        51 LiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~g~~iIDTPGf~~~  100 (161)
T PF03193_consen   51 LINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPDGGYIIDTPGFRSF  100 (161)
T ss_dssp             HHHHHHTSS----S--------------SEEEEEETTSEEEECSHHHHT-
T ss_pred             HHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCCCcEEEECCCCCcc
Confidence            578888873211  23332    346777778888667899999999554

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>cd01854 YjeQ_engC YjeQ/EngC

Probab=95.06  E-value=0.067  Score=38.87  Aligned_cols=42  Identities=26%  Similarity=0.305  Sum_probs=28.5

Q ss_pred             ChhcccCCCCceecc-------CCCCcceEEEEEEeCCceEEEcCCCCcc
Q 031293            1 MLNALTRQWGVVRTS-------DKPGLTQTINFFKLGTKLCLVDLPGYGF   43 (162)
Q Consensus         1 lin~L~~~~~~~~~~-------~~~g~t~~~~~~~~~~~~~ivDtpG~~~   43 (162)
                      |+|+|++.. ...++       .-+++|+....+.+.....++||||+..
T Consensus       177 lin~l~~~~-~~~~g~v~~~~~~g~~tT~~~~~~~~~~~~~liDtPG~~~  225 (287)
T cd01854         177 LINALLPDL-DLATGEISEKLGRGRHTTTHRELFPLPGGGLLIDTPGFRE  225 (287)
T ss_pred             HHHHHhchh-hccccceeccCCCCCcccceEEEEEcCCCCEEEECCCCCc
Confidence            578888873 22222       2344788887777765578999999954

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=95.05  E-value=0.69  Score=36.68  Aligned_cols=70  Identities=20%  Similarity=0.198  Sum_probs=36.1

Q ss_pred             CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCCC
Q 031293           31 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF  110 (162)
Q Consensus        31 ~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~  110 (162)
                      ..+.+|||||.+..   +.  .. ...+.. +..... ...++|+++....... .+.++.+.. ..+.-+|+||+|...
T Consensus       429 ~DLVLIDTaG~s~~---D~--~l-~eeL~~-L~aa~~-~a~lLVLpAtss~~Dl-~eii~~f~~-~~~~gvILTKlDEt~  498 (559)
T PRK12727        429 YKLVLIDTAGMGQR---DR--AL-AAQLNW-LRAARQ-VTSLLVLPANAHFSDL-DEVVRRFAH-AKPQGVVLTKLDETG  498 (559)
T ss_pred             CCEEEecCCCcchh---hH--HH-HHHHHH-HHHhhc-CCcEEEEECCCChhHH-HHHHHHHHh-hCCeEEEEecCcCcc
Confidence            46999999998321   00  00 111111 111111 3567777876542222 223333333 245789999999853

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=95.01  E-value=0.27  Score=37.55  Aligned_cols=71  Identities=18%  Similarity=0.243  Sum_probs=37.8

Q ss_pred             CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCc-eEEEEeccCCC
Q 031293           31 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDTV  109 (162)
Q Consensus        31 ~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~-~ivv~nK~Dl~  109 (162)
                      ..+.++||||.....  .   ..+. .+.+++... ..+.+++|+|+.... ....++.+.+..  .+ -=+++||.|..
T Consensus       321 ~DvVLIDTaGRs~kd--~---~lm~-EL~~~lk~~-~PdevlLVLsATtk~-~d~~~i~~~F~~--~~idglI~TKLDET  390 (436)
T PRK11889        321 VDYILIDTAGKNYRA--S---ETVE-EMIETMGQV-EPDYICLTLSASMKS-KDMIEIITNFKD--IHIDGIVFTKFDET  390 (436)
T ss_pred             CCEEEEeCccccCcC--H---HHHH-HHHHHHhhc-CCCeEEEEECCccCh-HHHHHHHHHhcC--CCCCEEEEEcccCC
Confidence            368999999973211  1   1111 123333322 246778888875321 111233333332  34 36777999987


Q ss_pred             Cc
Q 031293          110 FP  111 (162)
Q Consensus       110 ~~  111 (162)
                      ..
T Consensus       391 ~k  392 (436)
T PRK11889        391 AS  392 (436)
T ss_pred             CC
Confidence            53

>PF10609 ParA: ParA/MinD ATPase like; InterPro: IPR019591 This entry represents ATPases involved in plasmid partitioning []

Probab=95.00  E-value=0.18  Score=29.31  Aligned_cols=61  Identities=15%  Similarity=0.207  Sum_probs=32.9

Q ss_pred             eEEEcCC-CCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCceE-EEEeccC
Q 031293           33 LCLVDLP-GYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQ-VVLTKTD  107 (162)
Q Consensus        33 ~~ivDtp-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~i-vv~nK~D  107 (162)
                      +.++|+| |.|+.          .-.+-+++.    .+.+++|-.+.+-..........++++.++|++ +|-|..-
T Consensus         3 ~LiiD~PPGTgD~----------~l~~~~~~~----~~g~ivVTTPq~la~~dv~r~~~~~~~~~vpilGvVENMs~   65 (81)
T PF10609_consen    3 YLIIDLPPGTGDE----------HLTLMQYLP----IDGAIVVTTPQELALADVRRAIDMFRKLNVPILGVVENMSY   65 (81)
T ss_dssp             EEEEE--SCSSSH----------HHHHHHHH------SEEEEEE-CCC--HHHHHHHHHHHHCTT-EEEEEEECT-E
T ss_pred             EEEEeCCCCCCcH----------HHHHHHhCC----CCeEEEEeCCHHHHHHHHHHHHHHHHhcCCCcEEEEECCCc
Confidence            7899995 88764          222333332    367777766654333333456678888899976 6666543

It also contains cytosolic Fe-S cluster assembling factors, NBP35 and CFD1 which are required for biogenesis and export of both ribosomal subunits probably through assembling the ISCs in RLI1, a protein which performs rRNA processing and ribosome export [, , ].; PDB: 2PH1_A 3KB1_B.

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=94.98  E-value=0.65  Score=35.33  Aligned_cols=73  Identities=16%  Similarity=0.095  Sum_probs=39.6

Q ss_pred             CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhC-C-ceEEEEeccC
Q 031293           30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQ-T-KYQVVLTKTD  107 (162)
Q Consensus        30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~-~-~~ivv~nK~D  107 (162)
                      +..+.++||||....   ..  .. -..+.+++.......-+++|+|+..+.    ..+.+.+.... . +-=+++||.|
T Consensus       254 ~~DlVLIDTaGr~~~---~~--~~-l~el~~~l~~~~~~~e~~LVlsat~~~----~~~~~~~~~~~~~~~~~~I~TKlD  323 (388)
T PRK12723        254 DFDLVLVDTIGKSPK---DF--MK-LAEMKELLNACGRDAEFHLAVSSTTKT----SDVKEIFHQFSPFSYKTVIFTKLD  323 (388)
T ss_pred             CCCEEEEcCCCCCcc---CH--HH-HHHHHHHHHhcCCCCeEEEEEcCCCCH----HHHHHHHHHhcCCCCCEEEEEecc
Confidence            346999999997321   11  01 112334444332223578999987652    22223444332 3 3477889999


Q ss_pred             CCCcH
Q 031293          108 TVFPI  112 (162)
Q Consensus       108 l~~~~  112 (162)
                      .....
T Consensus       324 et~~~  328 (388)
T PRK12723        324 ETTCV  328 (388)
T ss_pred             CCCcc
Confidence            86443

>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]

Probab=94.63  E-value=0.056  Score=39.41  Aligned_cols=37  Identities=22%  Similarity=0.439  Sum_probs=28.0

Q ss_pred             CceeccCCCCcceEEEE-EEe--CCceEEEcCCCCccccc
Q 031293           10 GVVRTSDKPGLTQTINF-FKL--GTKLCLVDLPGYGFAYA   46 (162)
Q Consensus        10 ~~~~~~~~~g~t~~~~~-~~~--~~~~~ivDtpG~~~~~~   46 (162)
                      ..+.++.+||.|+.+.. +.+  .+.+.++||||....+.
T Consensus       172 k~a~vG~~pGVT~~V~~~iri~~rp~vy~iDTPGil~P~I  211 (335)
T KOG2485|consen  172 KAARVGAEPGVTRRVSERIRISHRPPVYLIDTPGILVPSI  211 (335)
T ss_pred             cceeccCCCCceeeehhheEeccCCceEEecCCCcCCCCC
Confidence            46789999999997764 333  55599999999966543

>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=94.62  E-value=0.035  Score=40.95  Aligned_cols=70  Identities=20%  Similarity=0.172  Sum_probs=48.4

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEe--------------------CCceEEEcCCCCccc-ccCHHHHHHHHHHHH
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKL--------------------GTKLCLVDLPGYGFA-YAKEEVKDAWEELVK   59 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~--------------------~~~~~ivDtpG~~~~-~~~~~~~~~~~~~~~   59 (162)
                      |||+||+. . +..++.|.+|.+.+....                    ...+++.|.+|.-.+ +.+       +.+-.
T Consensus        36 ~fnalT~~-~-a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGAs~G-------~GLGN  106 (391)
T KOG1491|consen   36 FFNALTKS-K-AGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGASAG-------EGLGN  106 (391)
T ss_pred             HHHHHhcC-C-CCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCcccC-------cCchH
Confidence            58999999 3 458999999998876433                    114899999998332 222       22334


Q ss_pred             HHHhcCcccceeEEEeecCC
Q 031293           60 EYVSTRVSLKRVCLLIDTKW   79 (162)
Q Consensus        60 ~~~~~~~~~~~vi~vid~~~   79 (162)
                      .++...+.+|.++.|+++.+
T Consensus       107 ~FLs~iR~vDaifhVVr~f~  126 (391)
T KOG1491|consen  107 KFLSHIRHVDAIFHVVRAFE  126 (391)
T ss_pred             HHHHhhhhccceeEEEEecC
Confidence            45555566799999999753

>TIGR01969 minD_arch cell division ATPase MinD, archaeal

Probab=94.55  E-value=0.43  Score=33.57  Aligned_cols=63  Identities=17%  Similarity=0.213  Sum_probs=36.4

Q ss_pred             CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCc-eEEEEeccCC
Q 031293           31 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDT  108 (162)
Q Consensus        31 ~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~-~ivv~nK~Dl  108 (162)
                      ..+.++|||+- .           .......+   ..+|.+++++++...-........+.....+.+ ..+++|+.+-
T Consensus       109 yD~VIiD~p~~-~-----------~~~~~~~l---~~ad~vliv~~~~~~s~~~~~~~~~~~~~~~~~~~~vv~N~~~~  172 (251)
T TIGR01969       109 TDFLLIDAPAG-L-----------ERDAVTAL---AAADELLLVVNPEISSITDALKTKIVAEKLGTAILGVVLNRVTR  172 (251)
T ss_pred             CCEEEEeCCCc-c-----------CHHHHHHH---HhCCeEEEEECCCCchHHHHHHHHHHHHhcCCceEEEEEECCCc
Confidence            46999999853 1           11222222   235899999887643222222333444444566 4689999985

This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.

>KOG0052 consensus Translation elongation factor EF-1 alpha/Tu [Translation, ribosomal structure and biogenesis]

Probab=94.54  E-value=0.019  Score=42.88  Aligned_cols=70  Identities=17%  Similarity=0.227  Sum_probs=49.7

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCC-------CCccHHHHHHHHHHhC-CceEEEE
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG-------VKPRDHELISLMERSQ-TKYQVVL  103 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~-------~~~~~~~~~~~l~~~~-~~~ivv~  103 (162)
                      .++++|.|||             ..+.+.++.+...+|+.++++.+..+       ...+..++......++ .+.++-+
T Consensus        83 ~i~iid~pgh-------------~d~~k~mitg~sqaD~avliva~~~gefEagiskngqt~ehalla~tlgv~qliv~v  149 (391)
T KOG0052|consen   83 YVTIIDAPGH-------------RDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGV  149 (391)
T ss_pred             EEEEecCCCC-------------CceeeeEEeeEeeeceeEEEEeeeccceeeeccccchhhhhhhhhccccceeeeEEe
Confidence            4889999999             77788888888899999999887322       2333344433333444 5689999


Q ss_pred             eccCCCCcHHH
Q 031293          104 TKTDTVFPIDV  114 (162)
Q Consensus       104 nK~Dl~~~~~~  114 (162)
                      ||+|...+...
T Consensus       150 ~k~D~~~~~~s  160 (391)
T KOG0052|consen  150 NKMDSTEPPYS  160 (391)
T ss_pred             ecccccCCCcc
Confidence            99998754443

>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily

Probab=94.52  E-value=0.17  Score=33.48  Aligned_cols=42  Identities=7%  Similarity=0.040  Sum_probs=26.0

Q ss_pred             ccceeEEEeecCCCCCccHHHHHHHHHHhCCce-EEEEeccCC
Q 031293           67 SLKRVCLLIDTKWGVKPRDHELISLMERSQTKY-QVVLTKTDT  108 (162)
Q Consensus        67 ~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~-ivv~nK~Dl  108 (162)
                      .+|.++++..+...-.......++.+.+.+.++ -+++|+.+-
T Consensus        91 ~ad~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvv~N~~~~  133 (169)
T cd02037          91 PIDGAVIVTTPQEVALDDVRKAIDMFKKVNIPILGVVENMSYF  133 (169)
T ss_pred             CCCeEEEEECCchhhHHHHHHHHHHHHhcCCCeEEEEEcCCcc
Confidence            347888887766433233344556666666664 577888774

Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.

>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster

Probab=94.47  E-value=0.15  Score=31.13  Aligned_cols=59  Identities=20%  Similarity=0.233  Sum_probs=33.6

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCC----ceEEEEec
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQT----KYQVVLTK  105 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~----~~ivv~nK  105 (162)
                      .+.++|||+.-            .......+   ..+|.+++++++...-.......++.+.+.+.    ++.+|+|+
T Consensus        44 D~IIiDtpp~~------------~~~~~~~l---~~aD~vlvvv~~~~~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr  106 (106)
T cd03111          44 DYVVVDLGRSL------------DEVSLAAL---DQADRVFLVTQQDLPSIRNAKRLLELLRVLDYSLPAKIELVLNR  106 (106)
T ss_pred             CEEEEeCCCCc------------CHHHHHHH---HHcCeEEEEecCChHHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence            59999998651            11222232   23489999988765322233344455554432    46677775

The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.

>KOG2423 consensus Nucleolar GTPase [General function prediction only]

Probab=94.35  E-value=0.0057  Score=45.91  Aligned_cols=40  Identities=28%  Similarity=0.585  Sum_probs=34.5

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEeCCceEEEcCCCC
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGY   41 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~ivDtpG~   41 (162)
                      +||.|-.+ .+++|++.||-|.--.+.++-.+++++|+||.
T Consensus       323 iINTLR~K-kVCkvAPIpGETKVWQYItLmkrIfLIDcPGv  362 (572)
T KOG2423|consen  323 IINTLRKK-KVCKVAPIPGETKVWQYITLMKRIFLIDCPGV  362 (572)
T ss_pred             HHHHHhhc-ccccccCCCCcchHHHHHHHHhceeEecCCCc
Confidence            47899888 68999999999987776677777999999997

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=94.27  E-value=1  Score=34.37  Aligned_cols=69  Identities=20%  Similarity=0.187  Sum_probs=39.5

Q ss_pred             CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHh-CCce-EEEEeccCC
Q 031293           31 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERS-QTKY-QVVLTKTDT  108 (162)
Q Consensus        31 ~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~-~~~~-ivv~nK~Dl  108 (162)
                      ..+.+|||.|.+.-.      ......+++++..... .-+++++++...    ...+...+... .+|+ -+++||+|.
T Consensus       282 ~d~ILVDTaGrs~~D------~~~i~el~~~~~~~~~-i~~~Lvlsat~K----~~dlkei~~~f~~~~i~~~I~TKlDE  350 (407)
T COG1419         282 CDVILVDTAGRSQYD------KEKIEELKELIDVSHS-IEVYLVLSATTK----YEDLKEIIKQFSLFPIDGLIFTKLDE  350 (407)
T ss_pred             CCEEEEeCCCCCccC------HHHHHHHHHHHhcccc-ceEEEEEecCcc----hHHHHHHHHHhccCCcceeEEEcccc
Confidence            369999999983321      1113346666665533 566777777642    12222333333 3554 677899997


Q ss_pred             CC
Q 031293          109 VF  110 (162)
Q Consensus       109 ~~  110 (162)
                      ..
T Consensus       351 T~  352 (407)
T COG1419         351 TT  352 (407)
T ss_pred             cC
Confidence            63

>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=94.11  E-value=0.41  Score=36.66  Aligned_cols=71  Identities=18%  Similarity=0.219  Sum_probs=39.9

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCce-EEEEeccCCCC
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKY-QVVLTKTDTVF  110 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~-ivv~nK~Dl~~  110 (162)
                      .+.||||+|--      ...+..-..+++ +...-++|-+++|+||..+  .......+..++ ..++ =+++||+|--.
T Consensus       184 DvvIvDTAGRl------~ide~Lm~El~~-Ik~~~~P~E~llVvDam~G--QdA~~~A~aF~e-~l~itGvIlTKlDGda  253 (451)
T COG0541         184 DVVIVDTAGRL------HIDEELMDELKE-IKEVINPDETLLVVDAMIG--QDAVNTAKAFNE-ALGITGVILTKLDGDA  253 (451)
T ss_pred             CEEEEeCCCcc------cccHHHHHHHHH-HHhhcCCCeEEEEEecccc--hHHHHHHHHHhh-hcCCceEEEEcccCCC
Confidence            69999999851      111111122222 2233456999999999765  222333333332 3453 67779999754


Q ss_pred             cH
Q 031293          111 PI  112 (162)
Q Consensus       111 ~~  112 (162)
                      +.
T Consensus       254 RG  255 (451)
T COG0541         254 RG  255 (451)
T ss_pred             cc
Confidence            44

>TIGR01007 eps_fam capsular exopolysaccharide family

Probab=94.10  E-value=0.17  Score=34.63  Aligned_cols=42  Identities=21%  Similarity=0.155  Sum_probs=27.2

Q ss_pred             cceeEEEeecCCCCCccHHHHHHHHHHhCCc-eEEEEeccCCC
Q 031293           68 LKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDTV  109 (162)
Q Consensus        68 ~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~-~ivv~nK~Dl~  109 (162)
                      +|.+++|+++...-........+.+...+.+ +-+|+||.|..
T Consensus       151 ~D~vilV~~~~~~~~~~~~~~~~~l~~~~~~~~gvVlN~~~~~  193 (204)
T TIGR01007       151 CDASILVTDAGEIKKRDVQKAKEQLEQTGSNFLGVVLNKVDIS  193 (204)
T ss_pred             CCeEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEEEeCcccc
Confidence            4888888887643333334455666666666 56788988853

This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.

>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.96  E-value=0.54  Score=33.39  Aligned_cols=72  Identities=14%  Similarity=0.122  Sum_probs=38.2

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHH-HHHHh----CCceEEEEecc
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELIS-LMERS----QTKYQVVLTKT  106 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~-~l~~~----~~~~ivv~nK~  106 (162)
                      ++.+||.||+-...-+.   -.++...       +++...++|||+.......-..+.. ..+..    ++.+=+.+.|.
T Consensus        76 nf~v~dfPGQ~~~Fd~s---~D~e~iF-------~~~gALifvIDaQddy~eala~L~~~v~raykvNp~in~EVfiHKv  145 (347)
T KOG3887|consen   76 NFQVWDFPGQMDFFDPS---FDYEMIF-------RGVGALIFVIDAQDDYMEALARLHMTVERAYKVNPNINFEVFIHKV  145 (347)
T ss_pred             ceEEeecCCccccCCCc---cCHHHHH-------hccCeEEEEEechHHHHHHHHHHHHHhhheeecCCCceEEEEEEec
Confidence            58899999982221100   0012222       2347889999997532111111111 11111    45688899999


Q ss_pred             CCCCcHH
Q 031293          107 DTVFPID  113 (162)
Q Consensus       107 Dl~~~~~  113 (162)
                      |-++++.
T Consensus       146 DGLsdd~  152 (347)
T KOG3887|consen  146 DGLSDDF  152 (347)
T ss_pred             cCCchhh
Confidence            9875543

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=93.94  E-value=0.54  Score=38.83  Aligned_cols=73  Identities=16%  Similarity=0.114  Sum_probs=37.0

Q ss_pred             CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHH-HHHHHHHHh-CC-ceEEEEeccC
Q 031293           31 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDH-ELISLMERS-QT-KYQVVLTKTD  107 (162)
Q Consensus        31 ~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~-~~~~~l~~~-~~-~~ivv~nK~D  107 (162)
                      ..+.+|||||.....  .    .....+.... .....+-+++|+|+....  .+. ++.+..... .. +-=+++||.|
T Consensus       264 ~D~VLIDTAGRs~~d--~----~l~eel~~l~-~~~~p~e~~LVLsAt~~~--~~l~~i~~~f~~~~~~~i~glIlTKLD  334 (767)
T PRK14723        264 KHLVLIDTVGMSQRD--R----NVSEQIAMLC-GVGRPVRRLLLLNAASHG--DTLNEVVHAYRHGAGEDVDGCIITKLD  334 (767)
T ss_pred             CCEEEEeCCCCCccC--H----HHHHHHHHHh-ccCCCCeEEEEECCCCcH--HHHHHHHHHHhhcccCCCCEEEEeccC
Confidence            469999999962211  0    0112222222 223346788999987431  111 222333221 11 2367789999


Q ss_pred             CCCcH
Q 031293          108 TVFPI  112 (162)
Q Consensus       108 l~~~~  112 (162)
                      .....
T Consensus       335 Et~~~  339 (767)
T PRK14723        335 EATHL  339 (767)
T ss_pred             CCCCc
Confidence            87533

>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]

Probab=93.83  E-value=0.65  Score=32.78  Aligned_cols=61  Identities=11%  Similarity=0.018  Sum_probs=36.3

Q ss_pred             CCceEEEEeccCCCCcHHH------------------HHHHHHHHHHHHhcCCCCCC---eEEeecCCCCCHHHHHHHHH
Q 031293           96 QTKYQVVLTKTDTVFPIDV------------------ARRAMQIEESLKANNSLVQP---VMMVSSKSGAGIRSLRTVLS  154 (162)
Q Consensus        96 ~~~~ivv~nK~Dl~~~~~~------------------~~~~~~~~~~~~~~~~~~~~---i~~~Sa~~~~g~~~l~~~i~  154 (162)
                      +.++|+.+||.|++.+.-.                  +...+.+-+.....++...+   ..+++|..-+++..++..+.
T Consensus       266 nssVIlFLNKkDlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVk  345 (359)
T KOG0085|consen  266 NSSVILFLNKKDLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVK  345 (359)
T ss_pred             CCceEEEechhhhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHH
Confidence            4679999999999744322                  12222222222222222222   34577888899999998887


Q ss_pred             Hh
Q 031293          155 KI  156 (162)
Q Consensus       155 ~~  156 (162)
                      ..
T Consensus       346 Dt  347 (359)
T KOG0085|consen  346 DT  347 (359)
T ss_pred             HH
Confidence            53

>PF14331 ImcF-related_N: ImcF-related N-terminal domain

Probab=93.72  E-value=0.3  Score=35.12  Aligned_cols=62  Identities=21%  Similarity=0.253  Sum_probs=36.8

Q ss_pred             HHHHHHHHHHHHHHh--cCcccceeEEEeecCCCCCccH-----HHHHH----HHHH------hCCceEEEEeccCCCC
Q 031293           49 EVKDAWEELVKEYVS--TRVSLKRVCLLIDTKWGVKPRD-----HELIS----LMER------SQTKYQVVLTKTDTVF  110 (162)
Q Consensus        49 ~~~~~~~~~~~~~~~--~~~~~~~vi~vid~~~~~~~~~-----~~~~~----~l~~------~~~~~ivv~nK~Dl~~  110 (162)
                      .....|..+++-..+  .....++|++.++..+-.....     ..+..    .+.+      ..+|+.+|+||+|++.
T Consensus         5 ~d~~~W~~~L~lL~~~R~r~PlnGvil~vs~~~Ll~~~~~~r~l~~~a~~lR~rL~el~~~lg~~~PVYvv~Tk~D~l~   83 (266)
T PF14331_consen    5 EDAAEWQAFLDLLRRHRPRQPLNGVILTVSVDDLLNADEAERELEALARALRQRLEELQRTLGVRLPVYVVFTKCDLLP   83 (266)
T ss_pred             hHHHHHHHHHHHHHhcCCCCCCCEEEEEEEHHHHhcCChhhhHHHHHHHHHHHHHHHHHHHhCCCCCeEeeeECCCccc
Confidence            345567666555433  3345799999999754221111     11222    2221      2589999999999984

>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.63  E-value=0.69  Score=35.12  Aligned_cols=66  Identities=20%  Similarity=0.262  Sum_probs=36.1

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHH--hcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCce-EEEEeccCC
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYV--STRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKY-QVVLTKTDT  108 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~-ivv~nK~Dl  108 (162)
                      .+.|+||.|-...     .    ..++.++.  ...-..|.+++|.|++-+-  .........++ .+.+ -+++||.|-
T Consensus       185 dvIIvDTSGRh~q-----e----~sLfeEM~~v~~ai~Pd~vi~VmDasiGQ--aae~Qa~aFk~-~vdvg~vIlTKlDG  252 (483)
T KOG0780|consen  185 DVIIVDTSGRHKQ-----E----ASLFEEMKQVSKAIKPDEIIFVMDASIGQ--AAEAQARAFKE-TVDVGAVILTKLDG  252 (483)
T ss_pred             cEEEEeCCCchhh-----h----HHHHHHHHHHHhhcCCCeEEEEEeccccH--hHHHHHHHHHH-hhccceEEEEeccc
Confidence            5899999985211     1    22233321  2223469999999998652  22223333332 2222 566699995


Q ss_pred             C
Q 031293          109 V  109 (162)
Q Consensus       109 ~  109 (162)
                      -
T Consensus       253 h  253 (483)
T KOG0780|consen  253 H  253 (483)
T ss_pred             C
Confidence            3

>PRK13505 formate--tetrahydrofolate ligase; Provisional

Probab=93.61  E-value=0.83  Score=36.19  Aligned_cols=63  Identities=17%  Similarity=0.159  Sum_probs=40.8

Q ss_pred             HHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEee--cCCCCCHHHHHHHHHHhh
Q 031293           88 LISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVS--SKSGAGIRSLRTVLSKIA  157 (162)
Q Consensus        88 ~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S--a~~~~g~~~l~~~i~~~~  157 (162)
                      +++.++.+++|++|++||.|.-.+.+.+    .+++.+.+.+.   +++.+.  +.-|+|-.++-+.+.+.+
T Consensus       364 HIenvr~FGvPvVVAINKFd~DTe~Ei~----~I~~~c~e~Gv---~va~~~~~~~Gg~Gai~LA~aVveA~  428 (557)
T PRK13505        364 HIENIRKFGVPVVVAINKFVTDTDAEIA----ALKELCEELGV---EVALSEVWAKGGEGGVELAEKVVELI  428 (557)
T ss_pred             HHHHHHHcCCCEEEEEeCCCCCCHHHHH----HHHHHHHHcCC---CEEEecccccCCcchHHHHHHHHHHH
Confidence            5566777899999999999986555554    44555555543   554333  344677666666665544

>PHA02518 ParA-like protein; Provisional

Probab=93.16  E-value=1.5  Score=29.84  Aligned_cols=64  Identities=13%  Similarity=0.123  Sum_probs=35.0

Q ss_pred             CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHH---h--CCc-eEEEE
Q 031293           30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMER---S--QTK-YQVVL  103 (162)
Q Consensus        30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~---~--~~~-~ivv~  103 (162)
                      ...+.++||||.-            .......+.   .+|.++.++.++..--....++.+.++.   .  +.| ..++.
T Consensus        76 ~~d~viiD~p~~~------------~~~~~~~l~---~aD~viip~~ps~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~  140 (211)
T PHA02518         76 GYDYVVVDGAPQD------------SELARAALR---IADMVLIPVQPSPFDIWAAPDLVELIKARQEVTDGLPKFAFII  140 (211)
T ss_pred             cCCEEEEeCCCCc------------cHHHHHHHH---HCCEEEEEeCCChhhHHHHHHHHHHHHHHHhhCCCCceEEEEE
Confidence            3469999999751            333444443   3499999988764211112223333332   1  344 45677


Q ss_pred             eccCC
Q 031293          104 TKTDT  108 (162)
Q Consensus       104 nK~Dl  108 (162)
                      |+.+.
T Consensus       141 n~~~~  145 (211)
T PHA02518        141 SRAIK  145 (211)
T ss_pred             eccCC
Confidence            87654

>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.88  E-value=0.6  Score=40.36  Aligned_cols=80  Identities=23%  Similarity=0.289  Sum_probs=48.7

Q ss_pred             CCceEEEcCCCCcccc--cCHHHHHHHHHH---HHHHHhcCcccceeEEEeecCCCCCccHHH---HH-------HHHHH
Q 031293           30 GTKLCLVDLPGYGFAY--AKEEVKDAWEEL---VKEYVSTRVSLKRVCLLIDTKWGVKPRDHE---LI-------SLMER   94 (162)
Q Consensus        30 ~~~~~ivDtpG~~~~~--~~~~~~~~~~~~---~~~~~~~~~~~~~vi~vid~~~~~~~~~~~---~~-------~~l~~   94 (162)
                      .++-+++||.|--..-  .+......|..+   ++++ +..+.+++|++-++..+-.+....+   +.       +.+.+
T Consensus       173 ~deaVlIDtaGry~~q~s~~~~~~~~W~~fL~lLkk~-R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~  251 (1188)
T COG3523         173 TDEAVLIDTAGRYITQDSADEVDRAEWLGFLGLLKKY-RRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRE  251 (1188)
T ss_pred             ccceEEEcCCcceecccCcchhhHHHHHHHHHHHHHh-ccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence            5568999999853332  233445566554   3444 5556789999999975532222211   12       22222


Q ss_pred             ---hCCceEEEEeccCCCC
Q 031293           95 ---SQTKYQVVLTKTDTVF  110 (162)
Q Consensus        95 ---~~~~~ivv~nK~Dl~~  110 (162)
                         ...|+.+++||+|++.
T Consensus       252 tL~~~~PVYl~lTk~Dll~  270 (1188)
T COG3523         252 TLHARLPVYLVLTKADLLP  270 (1188)
T ss_pred             hhccCCceEEEEecccccc
Confidence               1589999999999985

>TIGR01968 minD_bact septum site-determining protein MinD

Probab=92.78  E-value=0.41  Score=33.86  Aligned_cols=63  Identities=13%  Similarity=0.197  Sum_probs=36.2

Q ss_pred             CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCC-ceEEEEeccCC
Q 031293           31 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQT-KYQVVLTKTDT  108 (162)
Q Consensus        31 ~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~-~~ivv~nK~Dl  108 (162)
                      ..+.++|+|+.-            .......+   ..+|.+++++.+...--.....+++.+...+. ++.+++|+.+.
T Consensus       112 ~D~viiD~p~~~------------~~~~~~~l---~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~iviN~~~~  175 (261)
T TIGR01968       112 FDYVIIDCPAGI------------ESGFRNAV---APADEAIVVTTPEVSAVRDADRVIGLLEAKGIEKIHLIVNRLRP  175 (261)
T ss_pred             CCEEEEeCCCCc------------CHHHHHHH---HhCCeEEEEcCCCcHHHHHHHHHHHHHHHcCCCceEEEEeCcCc
Confidence            468999998641            11122222   23588888887763221222334455554443 57889999874

This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.

>TIGR02475 CobW cobalamin biosynthesis protein CobW

Probab=92.77  E-value=0.84  Score=34.11  Aligned_cols=82  Identities=22%  Similarity=0.295  Sum_probs=44.7

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHH----HHhcCcccceeEEEeecCCCCCcc--------------------HHH
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKE----YVSTRVSLKRVCLLIDTKWGVKPR--------------------DHE   87 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~vi~vid~~~~~~~~--------------------~~~   87 (162)
                      ...++.|.|....          ..++..    .+...-..+.++.|+|+.......                    ...
T Consensus        94 d~IvIEtsG~a~P----------~~i~~~~~~~~l~~~~~l~~vvtvVDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (341)
T TIGR02475        94 DHILIETSGLALP----------KPLVQAFQWPEIRSRVTVDGVVTVVDGPAVAAGRFAADPDALDAQRAADDNLDHETP  163 (341)
T ss_pred             CEEEEeCCCCCCH----------HHHHHHhcCccccceEEeeeEEEEEECchhhhhccccchhhhhhhccccccccccch
Confidence            5789999998442          222222    222333568899999996422100                    000


Q ss_pred             HHHH-HHHhCCceEEEEeccCCCCcHHHHHHHHHHHH
Q 031293           88 LISL-MERSQTKYQVVLTKTDTVFPIDVARRAMQIEE  123 (162)
Q Consensus        88 ~~~~-l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~  123 (162)
                      +... ......-=++++||+|+++..+.....+.+++
T Consensus       164 ~~~~~~~Qi~~AD~IvlnK~Dl~~~~~l~~~~~~l~~  200 (341)
T TIGR02475       164 LEELFEDQLACADLVILNKADLLDAAGLARVRAEIAA  200 (341)
T ss_pred             HHHHHHHHHHhCCEEEEeccccCCHHHHHHHHHHHHH
Confidence            0111 11112234788899999987776655544443

A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).

>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell

Probab=92.76  E-value=2.2  Score=29.58  Aligned_cols=69  Identities=13%  Similarity=0.042  Sum_probs=42.1

Q ss_pred             CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCc-eEEEEeccCCC
Q 031293           31 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDTV  109 (162)
Q Consensus        31 ~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~-~ivv~nK~Dl~  109 (162)
                      ..+.++|||..+..         ....+...+.. ..++.+++|+.+...........++.++..+.+ .-+|+|+....
T Consensus       114 yD~IIiD~pp~~~~---------~~~l~~~~l~~-~~~~~vllV~~p~~~s~~~~~~~l~~l~~~~~~~~glVlN~~~~~  183 (217)
T cd02035         114 YDVIVFDTAPTGHT---------LRLLVRELLTD-PERTSFRLVTLPEKLPLYETERAITELALYGIPVDAVVVNRVLPA  183 (217)
T ss_pred             CCEEEECCCCchHH---------HHHHHHHHccC-CCceEEEEEeCCCccHHHHHHHHHHHHHHCCCCCCEEEEeCCcCc
Confidence            56999999854211         01122222211 124788888888754444455667788777766 57888998754

This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=92.74  E-value=2.9  Score=32.27  Aligned_cols=73  Identities=21%  Similarity=0.290  Sum_probs=37.6

Q ss_pred             CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcC--cccceeEEEeecCCCCCccHHHHHHHHHHh-CCc-eEEEEec
Q 031293           30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTR--VSLKRVCLLIDTKWGVKPRDHELISLMERS-QTK-YQVVLTK  105 (162)
Q Consensus        30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~vi~vid~~~~~~~~~~~~~~~l~~~-~~~-~ivv~nK  105 (162)
                      +..+.++||||.....  ...-    ..+..++...  ....-+++|+|+..+.    ..+.+.+... ..+ -=+++||
T Consensus       299 ~~D~VLIDTaGr~~rd--~~~l----~eL~~~~~~~~~~~~~e~~LVLsAt~~~----~~~~~~~~~f~~~~~~glIlTK  368 (432)
T PRK12724        299 GSELILIDTAGYSHRN--LEQL----ERMQSFYSCFGEKDSVENLLVLSSTSSY----HHTLTVLKAYESLNYRRILLTK  368 (432)
T ss_pred             CCCEEEEeCCCCCccC--HHHH----HHHHHHHHhhcCCCCCeEEEEEeCCCCH----HHHHHHHHHhcCCCCCEEEEEc
Confidence            3468999999983211  1111    1233333222  1124678888987642    1222222222 233 4677899


Q ss_pred             cCCCCcH
Q 031293          106 TDTVFPI  112 (162)
Q Consensus       106 ~Dl~~~~  112 (162)
                      .|.....
T Consensus       369 LDEt~~~  375 (432)
T PRK12724        369 LDEADFL  375 (432)
T ss_pred             ccCCCCc
Confidence            9986433

>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases

Probab=92.11  E-value=0.73  Score=30.91  Aligned_cols=71  Identities=17%  Similarity=0.170  Sum_probs=41.4

Q ss_pred             CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhC--C-ceEEEEeccC
Q 031293           31 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQ--T-KYQVVLTKTD  107 (162)
Q Consensus        31 ~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~--~-~~ivv~nK~D  107 (162)
                      ..+.++|||+.-            .......+.   .+|.++.++++...-......+.+.++..+  . ..-+|+||.+
T Consensus        95 yD~iiiD~~~~~------------~~~~~~~l~---~ad~viv~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~vv~N~v~  159 (195)
T PF01656_consen   95 YDYIIIDTPPGL------------SDPVRNALA---AADYVIVPIEPDPSSIEGAERLIELLKRLGKKLKIIGVVINRVD  159 (195)
T ss_dssp             SSEEEEEECSSS------------SHHHHHHHH---TSSEEEEEEESSHHHHHHHHHHHHHHHHHTHTEEEEEEEEEEET
T ss_pred             ccceeecccccc------------cHHHHHHHH---hCceeeeecCCcHHHHHHHHHHHHHHHHhccccceEEEEEeeeC
Confidence            569999998641            122333333   358999998876421122233445555555  2 4688999998


Q ss_pred             CCCcHHHHH
Q 031293          108 TVFPIDVAR  116 (162)
Q Consensus       108 l~~~~~~~~  116 (162)
                      .-.......
T Consensus       160 ~~~~~~~~~  168 (195)
T PF01656_consen  160 PGNESKLQE  168 (195)
T ss_dssp             SCCHHHHHH
T ss_pred             CCccchHHH
Confidence            754444443

These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....

>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=92.03  E-value=1.1  Score=33.18  Aligned_cols=106  Identities=18%  Similarity=0.259  Sum_probs=51.9

Q ss_pred             CCceEEEcCCCCcccccC-HHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCc-eEEEEeccC
Q 031293           30 GTKLCLVDLPGYGFAYAK-EEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTD  107 (162)
Q Consensus        30 ~~~~~ivDtpG~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~-~ivv~nK~D  107 (162)
                      +..+.++||+|-=-+... ...-+++.+.++....  ...+-+++++||..+  +......+..++. .+ -=+++||.|
T Consensus       221 ~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~--~ap~e~llvlDAttG--qnal~QAk~F~ea-v~l~GiIlTKlD  295 (340)
T COG0552         221 GIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDP--DAPHEILLVLDATTG--QNALSQAKIFNEA-VGLDGIILTKLD  295 (340)
T ss_pred             CCCEEEEeCcccccCchhHHHHHHHHHHHhccccC--CCCceEEEEEEcccC--hhHHHHHHHHHHh-cCCceEEEEecc
Confidence            446999999985111110 0011111111111111  112448888899866  3334444444432 33 356779999


Q ss_pred             CCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHH
Q 031293          108 TVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRT  151 (162)
Q Consensus       108 l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~  151 (162)
                      -..+...-   -.+...++      .|+.++.  -|+++++|..
T Consensus       296 gtAKGG~i---l~I~~~l~------~PI~fiG--vGE~~~DL~~  328 (340)
T COG0552         296 GTAKGGII---LSIAYELG------IPIKFIG--VGEGYDDLRP  328 (340)
T ss_pred             cCCCccee---eeHHHHhC------CCEEEEe--CCCChhhccc
Confidence            65443221   11222222      4887775  5666776643

>CHL00175 minD septum-site determining protein; Validated

Probab=91.80  E-value=0.63  Score=33.53  Aligned_cols=63  Identities=8%  Similarity=0.122  Sum_probs=35.8

Q ss_pred             CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCC-ceEEEEeccCC
Q 031293           31 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQT-KYQVVLTKTDT  108 (162)
Q Consensus        31 ~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~-~~ivv~nK~Dl  108 (162)
                      ..+.++|||+.-            .......+   ..+|.+++|++++..--.....+.+.+...+. .+-+|+|+.+-
T Consensus       127 yD~VIiDtpp~~------------~~~~~~~l---~~aD~viiV~~p~~~si~~~~~~~~~l~~~~~~~~~lvvN~~~~  190 (281)
T CHL00175        127 YDYILIDCPAGI------------DVGFINAI---APAQEAIVVTTPEITAIRDADRVAGLLEANGIYNVKLLVNRVRP  190 (281)
T ss_pred             CCEEEEeCCCCC------------CHHHHHHH---HhcCeeEEEcCCChHHHHHHHHHHHHHHHcCCCceEEEEeccCh
Confidence            458999998541            12222332   23488888887764221222334455555443 36788899874

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=91.60  E-value=1  Score=35.83  Aligned_cols=85  Identities=19%  Similarity=0.148  Sum_probs=50.7

Q ss_pred             cccceeEEEeecCCCCCccHHHHHHHHH-----HhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeec
Q 031293           66 VSLKRVCLLIDTKWGVKPRDHELISLME-----RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSS  140 (162)
Q Consensus        66 ~~~~~vi~vid~~~~~~~~~~~~~~~l~-----~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa  140 (162)
                      ..||++.++.|++.+.   ...++..+.     ....|+++|.+|+|+-...+ ....+- .+.+...+.  .+.+.+|+
T Consensus       494 ~~cDv~~~~YDsS~p~---sf~~~a~v~~~~~~~~~~Pc~~va~K~dlDe~~Q-~~~iqp-de~~~~~~i--~~P~~~S~  566 (625)
T KOG1707|consen  494 AACDVACLVYDSSNPR---SFEYLAEVYNKYFDLYKIPCLMVATKADLDEVPQ-RYSIQP-DEFCRQLGL--PPPIHISS  566 (625)
T ss_pred             ceeeeEEEecccCCch---HHHHHHHHHHHhhhccCCceEEEeeccccchhhh-ccCCCh-HHHHHhcCC--CCCeeecc
Confidence            4579999999988542   223322221     24699999999999852221 111111 344554543  56777777


Q ss_pred             CCCCCHHHHHHHHHHhhh
Q 031293          141 KSGAGIRSLRTVLSKIAR  158 (162)
Q Consensus       141 ~~~~g~~~l~~~i~~~~~  158 (162)
                      +.... .+++.+|...+.
T Consensus       567 ~~~~s-~~lf~kL~~~A~  583 (625)
T KOG1707|consen  567 KTLSS-NELFIKLATMAQ  583 (625)
T ss_pred             CCCCC-chHHHHHHHhhh
Confidence            74222 788888876554

>PRK13849 putative crown gall tumor protein VirC1; Provisional

Probab=91.30  E-value=2.1  Score=30.07  Aligned_cols=62  Identities=10%  Similarity=-0.040  Sum_probs=33.8

Q ss_pred             CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHH------HhCCceEEEEe
Q 031293           31 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLME------RSQTKYQVVLT  104 (162)
Q Consensus        31 ~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~------~~~~~~ivv~n  104 (162)
                      ..+.++||||..            .......+.   .+|.++..+.++..-.......+..+.      ..+.|..+++|
T Consensus        84 yD~iiID~pp~~------------~~~~~~al~---~aD~vliP~~ps~~d~~~~~~~~~~v~~~~~~~~~~l~~~iv~~  148 (231)
T PRK13849         84 FDYALADTHGGS------------SELNNTIIA---SSNLLLIPTMLTPLDIDEALSTYRYVIELLLSENLAIPTAILRQ  148 (231)
T ss_pred             CCEEEEeCCCCc------------cHHHHHHHH---HCCEEEEeccCcHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEE
Confidence            469999999872            222333332   348888776654311111112222221      12567789999


Q ss_pred             ccC
Q 031293          105 KTD  107 (162)
Q Consensus       105 K~D  107 (162)
                      .++
T Consensus       149 ~~~  151 (231)
T PRK13849        149 RVP  151 (231)
T ss_pred             ecc
Confidence            986

>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins

Probab=91.16  E-value=1.3  Score=31.13  Aligned_cols=94  Identities=17%  Similarity=0.197  Sum_probs=46.1

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHH------HhCCceEEEEec
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLME------RSQTKYQVVLTK  105 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~------~~~~~~ivv~nK  105 (162)
                      .|.++||+|.             ...+..+.-.  .+|.++.-.-.+..=.....+.+.++.      ...+|.-+++|+
T Consensus        85 d~VlvDleG~-------------as~~~~~aia--~sDlVlIP~~~s~lD~~eA~~t~~~v~~~~~~~~~~ip~~Vl~Tr  149 (231)
T PF07015_consen   85 DFVLVDLEGG-------------ASELNDYAIA--RSDLVLIPMQPSQLDADEAAKTFKWVRRLEKAERRDIPAAVLFTR  149 (231)
T ss_pred             CEEEEeCCCC-------------CchhHHHHHH--HCCEEEECCCCChHHHHHHHHHHHHHHHHHHhhCCCCCeeEEEec
Confidence            5899999998             3333343322  247777654333210001111222222      235899999999


Q ss_pred             cCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHH
Q 031293          106 TDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRS  148 (162)
Q Consensus       106 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~  148 (162)
                      +.-......   ...+.+.+..     .|++.+.-.......+
T Consensus       150 ~~~~~~~~~---~~~~~e~~~~-----lpvl~t~l~eR~Af~~  184 (231)
T PF07015_consen  150 VPAARLTRA---QRIISEQLES-----LPVLDTELHERDAFRA  184 (231)
T ss_pred             CCcchhhHH---HHHHHHHHhc-----CCccccccccHHHHHH
Confidence            874312111   1233333331     4666666555443333

In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=90.10  E-value=7.4  Score=30.12  Aligned_cols=70  Identities=16%  Similarity=0.163  Sum_probs=36.6

Q ss_pred             CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHh-CCc-eEEEEeccCC
Q 031293           31 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERS-QTK-YQVVLTKTDT  108 (162)
Q Consensus        31 ~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~-~~~-~ivv~nK~Dl  108 (162)
                      ....++||+|....   .   ......+... .......-.++|+++....    ..+.+.+..+ ..+ -=+++||.|.
T Consensus       270 ~d~VLIDTaGrsqr---d---~~~~~~l~~l-~~~~~~~~~~LVl~at~~~----~~~~~~~~~f~~~~~~~~I~TKlDE  338 (420)
T PRK14721        270 KHMVLIDTVGMSQR---D---QMLAEQIAML-SQCGTQVKHLLLLNATSSG----DTLDEVISAYQGHGIHGCIITKVDE  338 (420)
T ss_pred             CCEEEecCCCCCcc---h---HHHHHHHHHH-hccCCCceEEEEEcCCCCH----HHHHHHHHHhcCCCCCEEEEEeeeC
Confidence            35899999987221   1   1112223333 2222235677888887432    1222333332 234 3677899998


Q ss_pred             CCc
Q 031293          109 VFP  111 (162)
Q Consensus       109 ~~~  111 (162)
                      ...
T Consensus       339 t~~  341 (420)
T PRK14721        339 AAS  341 (420)
T ss_pred             CCC
Confidence            643

>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA)

Probab=90.07  E-value=5.3  Score=28.47  Aligned_cols=78  Identities=9%  Similarity=-0.005  Sum_probs=41.9

Q ss_pred             CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCce-EEEEeccCC
Q 031293           30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKY-QVVLTKTDT  108 (162)
Q Consensus        30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~-ivv~nK~Dl  108 (162)
                      ...+.++|||..|....-....+.+.. +...+. ....+.+++|..+...........+..+...++++ -+|+|+..-
T Consensus       124 ~yD~VVvDtpPtg~tlrlL~lp~~l~~-~~~~l~-d~~~~~~vlV~~p~~~~~~e~~r~~~~L~~~g~~v~gvV~N~v~~  201 (254)
T cd00550         124 EYDVVVFDTAPTGHTLRLLSLPTVLSW-AREILS-DPERTSFRLVCIPEKMSLYETERAIQELAKYGIDVDAVIVNQLLP  201 (254)
T ss_pred             CCCEEEECCCCcHHHHHHHHhHHHHHH-HHHHhc-CCcceEEEEEeCCChhHHHHHHHHHHHHHHCCCCCCEEEEecCcc
Confidence            456999999866332000000000000 111222 12235677887776543334455677888888885 889999875


Q ss_pred             C
Q 031293          109 V  109 (162)
Q Consensus       109 ~  109 (162)
                      .
T Consensus       202 ~  202 (254)
T cd00550         202 E  202 (254)
T ss_pred             c
Confidence            3

This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.

>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ

Probab=89.61  E-value=2.8  Score=29.36  Aligned_cols=62  Identities=11%  Similarity=0.172  Sum_probs=34.6

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHH-HH-HHHHHh--CCceEEEEeccC
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHE-LI-SLMERS--QTKYQVVLTKTD  107 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~-~~-~~l~~~--~~~~ivv~nK~D  107 (162)
                      .+.++|||+. .           .......+.   .+|.+++++.+... ...... .+ +.+...  ..++-+|+|+.|
T Consensus       116 D~viiD~pp~-~-----------~~~~~~~l~---~ad~vii~~~~~~~-s~~~~~~~~~~l~~~~~~~~~~~iv~n~~~  179 (246)
T TIGR03371       116 DWVLIDVPRG-P-----------SPITRQALA---AADLVLVVVNADAA-CYATLHQQALALFAGSGPRIGPHFLINQFD  179 (246)
T ss_pred             CEEEEECCCC-c-----------hHHHHHHHH---hCCeEEEEeCCCHH-HHHHHHHHHHHHhhcccccccceEEeeccC
Confidence            5999999973 0           333444433   34899999877531 111111 12 222211  345778999998


Q ss_pred             CC
Q 031293          108 TV  109 (162)
Q Consensus       108 l~  109 (162)
                      .-
T Consensus       180 ~~  181 (246)
T TIGR03371       180 PA  181 (246)
T ss_pred             cc
Confidence            54

Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.

>cd02032 Bchl_like This family of proteins contains bchL and chlL

Probab=89.59  E-value=0.93  Score=32.40  Aligned_cols=65  Identities=9%  Similarity=0.090  Sum_probs=33.5

Q ss_pred             CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHH----hCCc-eEEEEe
Q 031293           30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMER----SQTK-YQVVLT  104 (162)
Q Consensus        30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~----~~~~-~ivv~n  104 (162)
                      +..+.++||||.-..           ..+..   ....+|.+++++.+...--.....+++.+..    .+.+ .-+|+|
T Consensus       115 ~yD~vIIDt~g~~~~-----------~~~~~---al~~aD~vlip~~p~~~~l~~~~~~~~~i~~~~~~~~l~~~giV~N  180 (267)
T cd02032         115 EYDVILFDVLGDVVC-----------GGFAA---PLNYADYALIVTDNDFDSIFAANRIAAAVREKAKTYKVRLAGLIAN  180 (267)
T ss_pred             cCCEEEEeCCCCccc-----------ccchh---hhhhcCEEEEEecCCcccHHHHHHHHHHHHHHhhccCCceEEEEEe
Confidence            346899999875110           00111   1334589998887753211122223333322    2444 347889


Q ss_pred             ccCC
Q 031293          105 KTDT  108 (162)
Q Consensus       105 K~Dl  108 (162)
                      +.|.
T Consensus       181 r~~~  184 (267)
T cd02032         181 RTDK  184 (267)
T ss_pred             CCCH
Confidence            9883

Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.

>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon

Probab=89.40  E-value=5.6  Score=28.31  Aligned_cols=57  Identities=11%  Similarity=0.200  Sum_probs=35.4

Q ss_pred             CceEEEcCC-CCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHh--CCceEEEEeccC
Q 031293           31 TKLCLVDLP-GYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERS--QTKYQVVLTKTD  107 (162)
Q Consensus        31 ~~~~ivDtp-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~--~~~~ivv~nK~D  107 (162)
                      ..+.++||| |.             ..+.+..+..   +|.++.|+.+...       ....+...  ....-+|+|+.|
T Consensus       118 ~~~iliD~P~g~-------------~~~~~~al~~---aD~vL~V~~~Da~-------s~~~L~q~~l~~~~~~liNq~~  174 (243)
T PF06564_consen  118 YDWILIDTPPGP-------------SPYTRQALAA---ADLVLVVVNPDAA-------SHARLHQRALPAGHRFLINQYD  174 (243)
T ss_pred             CCEEEEeCCCCC-------------cHHHHHHHHh---CCeEEEEeCCCHH-------HHHHHHHhcccCCcEEEEeccC
Confidence            359999998 55             4455555543   3899998877531       12222222  223688999999


Q ss_pred             CCC
Q 031293          108 TVF  110 (162)
Q Consensus       108 l~~  110 (162)
                      -.+
T Consensus       175 ~~s  177 (243)
T PF06564_consen  175 PAS  177 (243)
T ss_pred             ccc
Confidence            753

It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family

Probab=88.79  E-value=1.4  Score=36.51  Aligned_cols=64  Identities=13%  Similarity=-0.061  Sum_probs=36.5

Q ss_pred             CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCc-eEEEEeccCC
Q 031293           31 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDT  108 (162)
Q Consensus        31 ~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~-~ivv~nK~Dl  108 (162)
                      ..+.++|||+....            .-...+  ...+|.+++++...........+.++.+...+.+ .-+|+|+.|.
T Consensus       656 yD~IiID~pp~~~~------------~d~~~l--~~~~D~vl~v~~~~~~~~~~~~~~~~~l~~~~~~~~GvvlN~~~~  720 (754)
T TIGR01005       656 SDCVVVDVGTADPV------------RDMRAA--ARLAIIMLLVTAYDRVVVECGRADAQGISRLNGEVTGVFLNMLDP  720 (754)
T ss_pred             CCEEEEcCCCcchh------------HHHHHh--hhhCCeEEEEEEeCceeHHHHHHHHHHHHhcCCceEEEEecCCCh
Confidence            46899999876210            011111  1234888888775433223334455666655655 4689999884

The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.

>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt

Probab=88.25  E-value=0.78  Score=30.74  Aligned_cols=71  Identities=15%  Similarity=0.098  Sum_probs=35.7

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHH-HHHhCCceEEEEeccCCCC
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISL-MERSQTKYQVVLTKTDTVF  110 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~-l~~~~~~~ivv~nK~Dl~~  110 (162)
                      .+.++-+.|.....   ..  .   +....+...-..+.++.|+|+.... . ....... ......-=++++||+|+++
T Consensus        86 d~IiIE~sG~a~p~---~l--~---~~~~~~~~~~~~~~iI~vVDa~~~~-~-~~~~~~~~~~Qi~~ADvIvlnK~D~~~  155 (178)
T PF02492_consen   86 DRIIIETSGLADPA---PL--I---LQDPPLKEDFRLDSIITVVDATNFD-E-LENIPELLREQIAFADVIVLNKIDLVS  155 (178)
T ss_dssp             SEEEEEEECSSGGG---GH--H---HHSHHHHHHESESEEEEEEEGTTHG-G-HTTHCHHHHHHHCT-SEEEEE-GGGHH
T ss_pred             CEEEECCccccccc---hh--h---hccccccccccccceeEEecccccc-c-cccchhhhhhcchhcCEEEEeccccCC
Confidence            47888899874331   11  0   0122222233458899999996421 0 1111111 1222333478889999986


Q ss_pred             cH
Q 031293          111 PI  112 (162)
Q Consensus       111 ~~  112 (162)
                      ..
T Consensus       156 ~~  157 (178)
T PF02492_consen  156 DE  157 (178)
T ss_dssp             HH
T ss_pred             hh
Confidence            55

Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.

>PRK10818 cell division inhibitor MinD; Provisional

Probab=87.98  E-value=2.9  Score=29.89  Aligned_cols=64  Identities=9%  Similarity=0.100  Sum_probs=35.5

Q ss_pred             CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHh---------CCceE
Q 031293           30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERS---------QTKYQ  100 (162)
Q Consensus        30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~---------~~~~i  100 (162)
                      ...+.++|+|+.-            .......+   ..+|.+++++++...--.....+++.+...         ..+..
T Consensus       113 ~yd~viiD~p~~~------------~~~~~~~l---~~ad~vivv~~p~~~sl~~~~~~l~~i~~~~~~~~~~~~~~~~~  177 (270)
T PRK10818        113 DFEFIVCDSPAGI------------ETGALMAL---YFADEAIITTNPEVSSVRDSDRILGILASKSRRAENGEEPIKEH  177 (270)
T ss_pred             CCCEEEEeCCCCc------------cHHHHHHH---HhCCeEEEEcCCCchHHHhHHHHHHHHHHhhccccccccccceE
Confidence            3569999997541            12222222   335999999888743222223344443311         13357


Q ss_pred             EEEeccCC
Q 031293          101 VVLTKTDT  108 (162)
Q Consensus       101 vv~nK~Dl  108 (162)
                      +++|+.|.
T Consensus       178 vv~n~~~~  185 (270)
T PRK10818        178 LLLTRYNP  185 (270)
T ss_pred             EEEeccCH
Confidence            88899884

>PF08438 MMR_HSR1_C: GTPase of unknown function C-terminal; InterPro: IPR013646 This domain is found at the C terminus of IPR002917 from INTERPRO in archaeal and eukaryotic GTP-binding proteins

Probab=87.65  E-value=0.63  Score=28.67  Aligned_cols=32  Identities=19%  Similarity=0.218  Sum_probs=14.3

Q ss_pred             EEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecC
Q 031293          102 VLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSK  141 (162)
Q Consensus       102 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~  141 (162)
                      ++||+|+....   +.++.+.+...   .  .+++++||.
T Consensus         1 AaNK~D~~~a~---~ni~kl~~~~~---~--~~vVp~SA~   32 (109)
T PF08438_consen    1 AANKADLPAAD---ENIEKLKEKYP---D--EPVVPTSAA   32 (109)
T ss_dssp             EEE-GGG-S-H---HHHHHHHHHHT---T---EEEEE-HH
T ss_pred             CCccccccccH---hHHHHHHHhCC---C--CceeeccHH
Confidence            58999974322   22334433221   1  377788764

; PDB: 1WXQ_A.

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=87.63  E-value=12  Score=29.52  Aligned_cols=71  Identities=15%  Similarity=0.148  Sum_probs=33.5

Q ss_pred             CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCCC
Q 031293           31 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF  110 (162)
Q Consensus        31 ~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~  110 (162)
                      ..+.++||+|....   ..   .....+ ..+.......-.++++|+..+... -.+..+.....+ .--+++||.|...
T Consensus       335 ~d~VLIDTaGr~~~---d~---~~~e~~-~~l~~~~~p~e~~LVLdAt~~~~~-l~~i~~~f~~~~-~~g~IlTKlDet~  405 (484)
T PRK06995        335 KHIVLIDTIGMSQR---DR---MVSEQI-AMLHGAGAPVKRLLLLNATSHGDT-LNEVVQAYRGPG-LAGCILTKLDEAA  405 (484)
T ss_pred             CCeEEeCCCCcChh---hH---HHHHHH-HHHhccCCCCeeEEEEeCCCcHHH-HHHHHHHhccCC-CCEEEEeCCCCcc
Confidence            35899999996321   10   011111 122222112336888888653211 111222222222 2456789999763

>PRK11519 tyrosine kinase; Provisional

Probab=86.42  E-value=2.1  Score=35.36  Aligned_cols=41  Identities=10%  Similarity=0.026  Sum_probs=22.6

Q ss_pred             cceeEEEeecCCCCCccHHHHHHHHHHhCCce-EEEEeccCC
Q 031293           68 LKRVCLLIDTKWGVKPRDHELISLMERSQTKY-QVVLTKTDT  108 (162)
Q Consensus        68 ~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~-ivv~nK~Dl  108 (162)
                      +|.+++|+.........-...++.+...+.++ -+|+|+++.
T Consensus       659 ~d~~l~Vvr~~~t~~~~~~~~~~~l~~~~~~~~G~VlN~v~~  700 (719)
T PRK11519        659 VGTTLMVARYAVNTLKEVETSLSRFEQNGIPVKGVILNSIFR  700 (719)
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHHHhCCCCeEEEEEeCCcc
Confidence            47777777654322222233345555556664 477787753

>COG4963 CpaE Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion]

Probab=85.69  E-value=2.9  Score=31.51  Aligned_cols=66  Identities=17%  Similarity=0.270  Sum_probs=45.4

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhC---CceEEEEeccCC
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQ---TKYQVVLTKTDT  108 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~---~~~ivv~nK~Dl  108 (162)
                      .+.++|.| +..           ......++.+   +|.+++|++.+-+--....++++.+++..   .+...++||.+.
T Consensus       219 ~~vV~Dlp-~~~-----------~~~t~~vL~~---Sd~iviv~e~sl~slR~ak~lld~l~~~r~~~~~p~lv~n~~~~  283 (366)
T COG4963         219 DFVVVDLP-NIW-----------TDWTRQVLSG---SDEIVIVAEPSLASLRNAKELLDELKRLRPNDPKPILVLNRVGV  283 (366)
T ss_pred             CeEEEcCC-Ccc-----------chHHHHHHhc---CCeEEEEecccHHHHHHHHHHHHHHHHhCCCCCCceEEeeecCC
Confidence            58999999 522           3445555544   38999998876544455667777777653   568999999987


Q ss_pred             CCcH
Q 031293          109 VFPI  112 (162)
Q Consensus       109 ~~~~  112 (162)
                      ....
T Consensus       284 ~~~~  287 (366)
T COG4963         284 PKRP  287 (366)
T ss_pred             CCCC
Confidence            5433

>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase

Probab=85.47  E-value=2.7  Score=28.93  Aligned_cols=67  Identities=6%  Similarity=0.073  Sum_probs=34.3

Q ss_pred             CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHh----CCc-eEEEEe
Q 031293           30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERS----QTK-YQVVLT  104 (162)
Q Consensus        30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~----~~~-~ivv~n  104 (162)
                      ...+.++||||....          ..+. ..+. ...+|.++.++.+...-......+++.++..    +.+ ..++.|
T Consensus       116 ~yD~ilID~~g~~~~----------~~~~-~~l~-~~~ad~vliv~~p~~~sl~~~~~l~~~i~~~~~~~~~~~~gvv~N  183 (212)
T cd02117         116 DLDVVLYDVLGDVVC----------GGFA-MPIR-EGKADEIYIVTSGEFMALYAANNICKGIRKYAKSGGVRLGGLICN  183 (212)
T ss_pred             CCCEEEEecCCCcee----------cccc-cccc-cccCcEEEEEecccHHHHHHHHHHHHHHHHhCcccCCcEEEEEEe
Confidence            456999999875210          0110 0000 1246888888876532111112334444443    333 458999


Q ss_pred             ccCC
Q 031293          105 KTDT  108 (162)
Q Consensus       105 K~Dl  108 (162)
                      |.+.
T Consensus       184 ~~~~  187 (212)
T cd02117         184 SRNT  187 (212)
T ss_pred             CCCC
Confidence            9985

Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.

>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A

Probab=84.90  E-value=7.8  Score=30.15  Aligned_cols=67  Identities=13%  Similarity=0.215  Sum_probs=39.8

Q ss_pred             ceeEEEeecCCC------CCccHHHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCC
Q 031293           69 KRVCLLIDTKWG------VKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKS  142 (162)
Q Consensus        69 ~~vi~vid~~~~------~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~  142 (162)
                      -++++-.|++-+      ......+..+.|++.++|+++++|-.+=-++ +..+..+.+.   ..++   +++++++|.+
T Consensus       147 IGiVVTTDGSi~dipRe~Y~eAEervI~ELk~igKPFvillNs~~P~s~-et~~L~~eL~---ekY~---vpVlpvnc~~  219 (492)
T PF09547_consen  147 IGIVVTTDGSITDIPRENYVEAEERVIEELKEIGKPFVILLNSTKPYSE-ETQELAEELE---EKYD---VPVLPVNCEQ  219 (492)
T ss_pred             eeEEEecCCCccCCChHHHHHHHHHHHHHHHHhCCCEEEEEeCCCCCCH-HHHHHHHHHH---HHhC---CcEEEeehHH
Confidence            455666665432      2223344567888889999999998874432 2222222222   2333   5999998755

It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.

>COG0455 flhG Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]

Probab=84.65  E-value=11  Score=27.16  Aligned_cols=61  Identities=13%  Similarity=0.208  Sum_probs=35.2

Q ss_pred             ceEEEcCC-CCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCce---EEEEeccC
Q 031293           32 KLCLVDLP-GYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKY---QVVLTKTD  107 (162)
Q Consensus        32 ~~~ivDtp-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~---ivv~nK~D  107 (162)
                      .+.++||| |.+            ...+...+    .+|.+++|......--.......+++...+.+.   .+|+|+.+
T Consensus       114 D~iliD~~aGl~------------~~~~~~~~----~sd~~viVt~pe~~si~~A~~~i~~~~~~~~~~~~~~vV~N~v~  177 (262)
T COG0455         114 DYILIDTGAGLS------------RDTLSFIL----SSDELVIVTTPEPTSITDAYKTIKILSKLGLDLLGRRVVLNRVR  177 (262)
T ss_pred             CEEEEeCCCCcc------------HHHHHHHH----hcCcEEEEeCCCcchHHHHHHHHHHHHHcCCccccceEEEEecc
Confidence            58999997 562            12222222    237777776655332222334456666666553   38999998


Q ss_pred             C
Q 031293          108 T  108 (162)
Q Consensus       108 l  108 (162)
                      -
T Consensus       178 ~  178 (262)
T COG0455         178 S  178 (262)
T ss_pred             c
Confidence            3

>PRK11670 antiporter inner membrane protein; Provisional

Probab=84.28  E-value=2.9  Score=31.69  Aligned_cols=65  Identities=12%  Similarity=0.200  Sum_probs=35.5

Q ss_pred             CceEEEcCC-CCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCce-EEEEeccCC
Q 031293           31 TKLCLVDLP-GYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKY-QVVLTKTDT  108 (162)
Q Consensus        31 ~~~~ivDtp-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~-ivv~nK~Dl  108 (162)
                      ..+.++||| |.|+.           ...   +.....+|.+++|..+............+++...+.|+ -+|.|+.+.
T Consensus       216 yDyvIID~PPg~gd~-----------~l~---~~~l~aad~viiV~tp~~~s~~da~~~i~~~~~~~~~ilGiV~Nm~~~  281 (369)
T PRK11670        216 LDYLVLDMPPGTGDI-----------QLT---LAQNIPVTGAVVVTTPQDIALIDAKKGIVMFEKVEVPVLGIVENMSMH  281 (369)
T ss_pred             CCEEEEeCCCCCchH-----------HHH---HhhhccCCeEEEEecCchhHHHHHHHHHHHHhccCCCeEEEEEcCCcc
Confidence            468999996 66321           111   11112348888877664322112233345555557775 588899875


Q ss_pred             C
Q 031293          109 V  109 (162)
Q Consensus       109 ~  109 (162)
                      .
T Consensus       282 ~  282 (369)
T PRK11670        282 I  282 (369)
T ss_pred             c
Confidence            4

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=83.96  E-value=2.2  Score=30.78  Aligned_cols=28  Identities=18%  Similarity=0.254  Sum_probs=24.5

Q ss_pred             CCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293          131 LVQPVMMVSSKSGAGIRSLRTVLSKIAR  158 (162)
Q Consensus       131 ~~~~i~~~Sa~~~~g~~~l~~~i~~~~~  158 (162)
                      ...|+++.||.++.|++.|++.|...++
T Consensus       241 ~~~PV~~gSa~~~~Gi~~lld~i~~~~p  268 (270)
T cd01886         241 KIVPVLCGSAFKNKGVQPLLDAVVDYLP  268 (270)
T ss_pred             cEEEEEeCcCCCCcCHHHHHHHHHHhcC
Confidence            3479999999999999999999987664

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>KOG1533 consensus Predicted GTPase [General function prediction only]

Probab=83.86  E-value=0.55  Score=33.18  Aligned_cols=78  Identities=17%  Similarity=0.168  Sum_probs=41.7

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCC--CCccHHHH---HHHHHHhCCceEEEEecc
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG--VKPRDHEL---ISLMERSQTKYQVVLTKT  106 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~--~~~~~~~~---~~~l~~~~~~~ivv~nK~  106 (162)
                      .+.+.|+||+-+......   .....++. +++..-.-+++-++|+.--  ....-..+   +..+-....|.+=|+.|+
T Consensus        98 ~Y~lFDcPGQVELft~h~---~l~~I~~~-Lek~~~rl~~V~LiDs~ycs~p~~~iS~lL~sl~tMl~melphVNvlSK~  173 (290)
T KOG1533|consen   98 HYVLFDCPGQVELFTHHD---SLNKIFRK-LEKLDYRLVAVNLIDSHYCSDPSKFISSLLVSLATMLHMELPHVNVLSKA  173 (290)
T ss_pred             cEEEEeCCCcEEEEeccc---hHHHHHHH-HHHcCceEEEEEeeeceeeCChHHHHHHHHHHHHHHHhhcccchhhhhHh
Confidence            599999999855432211   11222222 2223333566777887421  11111111   223334578999999999


Q ss_pred             CCCCcHH
Q 031293          107 DTVFPID  113 (162)
Q Consensus       107 Dl~~~~~  113 (162)
                      |+..+..
T Consensus       174 Dl~~~yg  180 (290)
T KOG1533|consen  174 DLLKKYG  180 (290)
T ss_pred             HHHHhhc
Confidence            9975443

>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG

Probab=83.64  E-value=3.3  Score=29.68  Aligned_cols=24  Identities=0%  Similarity=0.117  Sum_probs=12.0

Q ss_pred             ceEEEEeccCCCCcHHHHHHHHHH
Q 031293           98 KYQVVLTKTDTVFPIDVARRAMQI  121 (162)
Q Consensus        98 ~~ivv~nK~Dl~~~~~~~~~~~~~  121 (162)
                      ..++++.+.+........+..+.+
T Consensus       237 d~vilV~~~~~t~~~~~~~~~~~l  260 (274)
T TIGR03029       237 RGTLIVSRVNETRLHELTSLKEHL  260 (274)
T ss_pred             CeEEEEEECCCCCHHHHHHHHHHH
Confidence            344455566665555554444333

The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).

>PRK11537 putative GTP-binding protein YjiA; Provisional

Probab=83.33  E-value=7.2  Score=28.93  Aligned_cols=73  Identities=16%  Similarity=0.156  Sum_probs=37.3

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHH-HHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCCC
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELV-KEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF  110 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~  110 (162)
                      ...++.|.|....   .+.   ...+. ...+...-..+.++.|+|+.......+... ........-=++++||+|+.+
T Consensus        92 d~IvIEttG~a~p---~~i---~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~-~~~~Qi~~AD~IvlnK~Dl~~  164 (318)
T PRK11537         92 DRLVIECTGMADP---GPI---IQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFT-IAQSQVGYADRILLTKTDVAG  164 (318)
T ss_pred             CEEEEECCCccCH---HHH---HHHHhcChhhcccEEeccEEEEEEhhhhhhhccccH-HHHHHHHhCCEEEEeccccCC
Confidence            4678889888432   111   11111 122333345689999999975322111100 111111223478889999986


Q ss_pred             c
Q 031293          111 P  111 (162)
Q Consensus       111 ~  111 (162)
                      .
T Consensus       165 ~  165 (318)
T PRK11537        165 E  165 (318)
T ss_pred             H
Confidence            4

>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]

Probab=82.46  E-value=9.1  Score=27.58  Aligned_cols=42  Identities=12%  Similarity=0.092  Sum_probs=26.0

Q ss_pred             ceeEEEeecCCCCCccHHHHHHHHHHhCCce-EEEEeccCCCC
Q 031293           69 KRVCLLIDTKWGVKPRDHELISLMERSQTKY-QVVLTKTDTVF  110 (162)
Q Consensus        69 ~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~-ivv~nK~Dl~~  110 (162)
                      +.+++|...............+++...+.|+ =+|.|+.+...
T Consensus       191 ~g~viVt~p~~~~~~~v~ka~~~~~~~~~~vlGvv~Nm~~~~~  233 (265)
T COG0489         191 DGVVIVTTPGKTALEDVKKAIDMLEKAGIPVLGVVENMSYFIC  233 (265)
T ss_pred             CeEEEEeCCccchHHHHHHHHHHHHhcCCceEEEEecCccCcc
Confidence            5677776655433333344556777777774 67778777654

>PRK13705 plasmid-partitioning protein SopA; Provisional

Probab=82.33  E-value=13  Score=28.40  Aligned_cols=33  Identities=6%  Similarity=-0.082  Sum_probs=20.8

Q ss_pred             CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecC
Q 031293           31 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTK   78 (162)
Q Consensus        31 ~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~   78 (162)
                      ..+.++|||..-            ..+....+..   +|.++..+.+.
T Consensus       235 YD~IiIDtpP~l------------~~~t~nal~A---aD~viiP~~~~  267 (388)
T PRK13705        235 YDVIVIDSAPNL------------GIGTINVVCA---ADVLIVPTPAE  267 (388)
T ss_pred             CCEEEEECCCch------------hHHHHHHHHH---cCEEEEecCCc
Confidence            468999998540            3334444443   38888877664

>KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism]

Probab=82.27  E-value=5.5  Score=29.47  Aligned_cols=85  Identities=19%  Similarity=0.275  Sum_probs=43.9

Q ss_pred             eEEEcCCCCcccccCHHHHHHHHHH-HHHHHhcCcccceeEEEeecCCCCCccH----HHHH-HHHHHhCCceEEEEecc
Q 031293           33 LCLVDLPGYGFAYAKEEVKDAWEEL-VKEYVSTRVSLKRVCLLIDTKWGVKPRD----HELI-SLMERSQTKYQVVLTKT  106 (162)
Q Consensus        33 ~~ivDtpG~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~vi~vid~~~~~~~~~----~~~~-~~l~~~~~~~ivv~nK~  106 (162)
                      ..++.|.|.-..   -+..   .-+ ..+.+...-..|+++-|+|+.......+    .-+. +........=-+++||.
T Consensus       148 ~IllETTGlAnP---aPia---~~Fw~dd~l~sdVkLDGIVTvvD~K~~~~~Lde~k~~g~i~EA~~QiA~AD~II~NKt  221 (391)
T KOG2743|consen  148 HILLETTGLANP---APIA---SMFWLDDELGSDVKLDGIVTVVDAKHILKHLDEEKPDGLINEATRQIALADRIIMNKT  221 (391)
T ss_pred             eEEEeccCCCCc---HHHH---HHHhhhhhhcCceeeeeEEEEEehhhHHhhhcccCcccchHHHHHHHhhhheeeeccc
Confidence            667888887221   1111   111 3334444445699999999964210000    0000 11110111124677999


Q ss_pred             CCCCcHHHHHHHHHHHH
Q 031293          107 DTVFPIDVARRAMQIEE  123 (162)
Q Consensus       107 Dl~~~~~~~~~~~~~~~  123 (162)
                      |++++.+..+..+.+++
T Consensus       222 Dli~~e~~~~l~q~I~~  238 (391)
T KOG2743|consen  222 DLVSEEEVKKLRQRIRS  238 (391)
T ss_pred             cccCHHHHHHHHHHHHH
Confidence            99998887766666654

>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein

Probab=82.07  E-value=3.3  Score=30.60  Aligned_cols=62  Identities=15%  Similarity=0.163  Sum_probs=34.1

Q ss_pred             CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccC
Q 031293           31 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTD  107 (162)
Q Consensus        31 ~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~D  107 (162)
                      ..+.++|+|+..            .......+   ..+|.+++++++...-......+++.+...+..+-+|+|...
T Consensus       205 ~D~VIID~p~~~------------~~~~~~~L---~~AD~vliV~~~~~~sl~~a~r~l~~l~~~~~~~~lVv~~~~  266 (322)
T TIGR03815       205 GDLVVVDLPRRL------------TPAAETAL---ESADLVLVVVPADVRAVAAAARVCPELGRRNPDLRLVVRGPA  266 (322)
T ss_pred             CCEEEEeCCCCC------------CHHHHHHH---HHCCEEEEEcCCcHHHHHHHHHHHHHHhhhCCCeEEEEeCCC
Confidence            368999999762            11222332   234899999876542222223345555544444555667643

Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.

>cd00477 FTHFS Formyltetrahydrofolate synthetase (FTHFS) catalyzes the ATP-dependent activation of formate ion via its addition to the N10 position of tetrahydrofolate

Probab=81.44  E-value=14  Score=29.41  Aligned_cols=65  Identities=14%  Similarity=0.158  Sum_probs=42.2

Q ss_pred             HHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEee--cCCCCCHHHHHHHHHHhhh
Q 031293           87 ELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVS--SKSGAGIRSLRTVLSKIAR  158 (162)
Q Consensus        87 ~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S--a~~~~g~~~l~~~i~~~~~  158 (162)
                      .+.+.++..++|+++++|+.-.-.+.+++    .+++.+...+.   +...+.  +.-|+|-.+|-+.+.+.++
T Consensus       347 ~Hi~n~~~fg~p~VVaiN~F~~Dt~~Ei~----~v~~~~~~~g~---~~~~~~~~~~GG~Ga~eLA~~Vi~a~e  413 (524)
T cd00477         347 KHIENIKKFGVPVVVAINKFSTDTDAELA----LVRKLAEEAGA---FVAVSEHWAEGGKGAVELAEAVIEACE  413 (524)
T ss_pred             HHHHHHHHcCCCeEEEecCCCCCCHHHHH----HHHHHHHHcCC---CEEEehhhhhhhhhHHHHHHHHHHHhc
Confidence            34566777899999999999765555554    44555554443   444333  3457888888777776554

FTHFS is a highly expressed key enzyme in both the Wood-Ljungdahl pathway of autotrophic CO2 fixation (acetogenesis) and the glycine synthase/reductase pathways of purinolysis. The key physiological role of this enzyme in acetogens is to catalyze the formylation of tetrahydrofolate, an initial step in the reduction of carbon dioxide and other one-carbon precursors to acetate. In purinolytic organisms, the enzymatic reaction is reversed, liberating formate from 10-formyltetrahydrofolate with concurrent production of ATP.

>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional

Probab=81.35  E-value=3.9  Score=33.90  Aligned_cols=41  Identities=7%  Similarity=0.011  Sum_probs=20.3

Q ss_pred             cceeEEEeecCCCCCccHHHHHHHHHHhCCce-EEEEeccCC
Q 031293           68 LKRVCLLIDTKWGVKPRDHELISLMERSQTKY-QVVLTKTDT  108 (162)
Q Consensus        68 ~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~-ivv~nK~Dl  108 (162)
                      +|.+++|+.........-...++.+...+.++ -+|+|+++.
T Consensus       664 ad~~llVvr~~~t~~~~~~~~~~~l~~~~~~~~G~VlN~~~~  705 (726)
T PRK09841        664 VGTSLLVARFGLNTAKEVSLSMQRLEQAGVNIKGAILNGVIK  705 (726)
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHHHhCCCceEEEEEeCccc
Confidence            36666665543222122233344555455553 467777763

>CHL00072 chlL photochlorophyllide reductase subunit L

Probab=80.76  E-value=3.3  Score=30.17  Aligned_cols=63  Identities=10%  Similarity=0.083  Sum_probs=31.7

Q ss_pred             CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHh----CCc-eEEEEec
Q 031293           31 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERS----QTK-YQVVLTK  105 (162)
Q Consensus        31 ~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~----~~~-~ivv~nK  105 (162)
                      ..+.++||||.-..          .. +.   .....+|.+++++++...--.....+++.++..    +.+ .-+++|+
T Consensus       116 yD~IiIDt~~~l~~----------~a-~~---aal~~AD~viIp~~p~~~sl~~~~~l~~~i~~~~~~~~l~~~gvv~n~  181 (290)
T CHL00072        116 YDIILFDVLGDVVC----------GG-FA---APLNYADYCIIITDNGFDALFAANRIAASVREKARTHPLRLAGLVGNR  181 (290)
T ss_pred             CCEEEEecCCccee----------ch-hh---hhhhcCCEEEEEecCCHHHHHHHHHHHHHHHHHhccCCCceEEEEEeC
Confidence            45889999865110          11 11   112345888888776532111112233333322    233 3588899


Q ss_pred             cC
Q 031293          106 TD  107 (162)
Q Consensus       106 ~D  107 (162)
                      .+
T Consensus       182 ~~  183 (290)
T CHL00072        182 TS  183 (290)
T ss_pred             CC
Confidence            87

>PRK13507 formate--tetrahydrofolate ligase; Provisional

Probab=80.47  E-value=16  Score=29.38  Aligned_cols=64  Identities=16%  Similarity=0.157  Sum_probs=40.8

Q ss_pred             HHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEee--cCCCCCHHHHHHHHHHhhh
Q 031293           88 LISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVS--SKSGAGIRSLRTVLSKIAR  158 (162)
Q Consensus        88 ~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S--a~~~~g~~~l~~~i~~~~~  158 (162)
                      +++.++.+++|+++++|+...-.+.+++    .+++.+...+.   +...+.  +.-|+|-.+|-+.+.+.++
T Consensus       393 Hi~n~~~fg~pvVVaiN~F~~Dt~~Ei~----~l~~~~~~~g~---~~~v~~~wa~GGeGa~eLA~~Vv~a~e  458 (587)
T PRK13507        393 HIGTVKKSGINPVVCINAFYTDTHAEIA----IVRRLAEQAGA---RVAVSRHWEKGGEGALELADAVIDACN  458 (587)
T ss_pred             HHHHHHHcCCCeEEEeCCCCCCCHHHHH----HHHHHHHHcCC---CEEEechhhccchhHHHHHHHHHHHhh
Confidence            4556667799999999999765555554    44444544443   444333  3457777787777766544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	162
1pui_A	210	Structure Of Engb Gtpase Length = 210		4e-18
3pqc_A	195	Crystal Structure Of Thermotoga Maritima Ribosome B		2e-16
1sul_A	195	Crystal Structure Of The Apo-Ysxc Length = 195		1e-15
4dhe_A	223	Crystal Structure Of A Probable Gtp-Binding Protein		1e-11
4ac9_A	482	Crystal Structure Of Translation Elongation Factor		2e-05

>pdb|1PUI|A Chain A, Structure Of Engb Gtpase Length = 210

Iteration: 1
 Score = 87.0 bits (214), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 59/155 (38%), Positives = 82/155 (52%), Gaps = 5/155 (3%)
Query: 2   LNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 61
           LN LT Q  + RTS  PG TQ IN F++     LVDLPGYG+A   EE+K  W+  + EY
Sbjct: 43  LNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQRALGEY 102
Query: 62  VSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAM-- 119
           +  R SL+ + +L+D +  +K  D ++I     S     V+LTK D +     AR+A   
Sbjct: 103 LEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKL--ASGARKAQLN 160
Query: 120 QIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLS 154
            + E++ A N  VQ V   SS    G+  LR  L 
Sbjct: 161 MVREAVLAFNGDVQ-VETFSSLKKQGVDKLRQKLD 194

>pdb|3PQC|A Chain A, Crystal Structure Of Thermotoga Maritima Ribosome Biogenesis Gtp- Binding Protein Engb (YsxcYIHA) IN COMPLEX WITH GDP Length = 195

Iteration: 1
 Score = 81.6 bits (200), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 53/161 (32%), Positives = 91/161 (56%), Gaps = 9/161 (5%)
Query: 1   MLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 60
           +LNAL  +  +   S  PG T++INF+ + +K   VDLPGYG+A   ++ +  W+ LV++
Sbjct: 39  LLNALFNR-KIAFVSKTPGKTRSINFYLVNSKYYFVDLPGYGYAKVSKKERMLWKRLVED 97
Query: 61  YVSTRVSLKRVCLLIDTKWGVKPRDHEL--ISLMERSQTKYQVVLTKTDTVFPIDVARRA 118
           Y   R SL+ V LL+D +  + P+D +L  +  M+     + +VLTK D V    ++ RA
Sbjct: 98  YFKNRWSLQMVFLLVDGR--IPPQDSDLMMVEWMKSLNIPFTIVLTKMDKV---KMSERA 152
Query: 119 MQIEESLKANNSLVQ-PVMMVSSKSGAGIRSLRTVLSKIAR 158
            ++EE  K  +   +  ++  SS +G GI  L  ++S + +
Sbjct: 153 KKLEEHRKVFSKYGEYTIIPTSSVTGEGISELLDLISTLLK 193

>pdb|1SUL|A Chain A, Crystal Structure Of The Apo-Ysxc Length = 195

Iteration: 1
 Score = 78.6 bits (192), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 36/109 (33%), Positives = 62/109 (56%)
Query: 1   MLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 60
            +N+L  +  + RTS KPG TQT+NF+ +  +L  VD+PGYGFA   +  ++AW  +++ 
Sbjct: 39  FINSLINRKNLARTSSKPGKTQTLNFYIINDELHFVDVPGYGFAKVSKSEREAWGRMIET 98
Query: 61  YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV 109
           Y++TR  LK V  ++D +      D ++   ++       V+ TK D +
Sbjct: 99  YITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKI 147

>pdb|4DHE|A Chain A, Crystal Structure Of A Probable Gtp-Binding Protein Engb From Burkholderia Thailandensis Length = 223

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 37/110 (33%), Positives = 53/110 (48%), Gaps = 4/110 (3%)
Query: 2   LNALTRQWGVVRTSDKPGLTQTINFFKLGTKL----CLVDLPGYGFAYAKEEVKDAWEEL 57
           +N L  Q  +   S  PG TQ IN+F +G        LVDLPGYG+A      K  WE+L
Sbjct: 46  INVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQL 105
Query: 58  VKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTD 107
           +  Y+ TR  L  + L++D +  +   D  +I     +      +LTK D
Sbjct: 106 LSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPTGKPIHSLLTKCD 155

>pdb|4AC9|A Chain A, Crystal Structure Of Translation Elongation Factor Selb From Methanococcus Maripaludis In Complex With Gdp Length = 482

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 71/143 (49%), Gaps = 17/143 (11%)
Query: 15  SDKPGLTQTINF--FKL-GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRV 71
           S K G+T  I F  FKL   ++ LVD PG+              +L++  VS    +   
Sbjct: 54  SQKRGITIDIGFSAFKLENYRITLVDAPGHA-------------DLIRAVVSAADIIDLA 100
Query: 72  CLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSL 131
            +++D K G K +  E + +++       VV+TK+D     ++ R  M ++  L++ ++L
Sbjct: 101 LIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNL 160
Query: 132 VQ-PVMMVSSKSGAGIRSLRTVL 153
               ++ +S+K+G G+  L+ ++
Sbjct: 161 KNSSIIPISAKTGFGVDELKNLI 183

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	162
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	7e-46
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	3e-45
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	8e-44
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	2e-42
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	1e-25
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	1e-12
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	6e-05
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	3e-04
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	4e-04

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 Length = 210

 Score =  148 bits (375), Expect = 7e-46
 Identities = 55/156 (35%), Positives = 78/156 (50%), Gaps = 1/156 (0%)

Query: 1   MLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 60
            LN LT Q  + RTS  PG TQ IN F++     LVDLPGYG+A   EE+K  W+  + E
Sbjct: 42  ALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQRALGE 101

Query: 61  YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQ 120
           Y+  R SL+ + +L+D +  +K  D ++I     S     V+LTK D +       +   
Sbjct: 102 YLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGARKAQLNM 161

Query: 121 IEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKI 156
           + E++ A N  V  V   SS    G+  LR  L   
Sbjct: 162 VREAVLAFNGDV-QVETFSSLKKQGVDKLRQKLDTW 196

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* Length = 195

 Score =  145 bits (369), Expect = 3e-45
 Identities = 42/156 (26%), Positives = 80/156 (51%), Gaps = 2/156 (1%)

Query: 1   MLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 60
            +N+L  +  + RTS KPG TQT+NF+ +  +L  VD+PGYGFA   +  ++AW  +++ 
Sbjct: 39  FINSLINRKNLARTSSKPGKTQTLNFYIINDELHFVDVPGYGFAKVSKSEREAWGRMIET 98

Query: 61  YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQ 120
           Y++TR  LK V  ++D +      D ++   ++       V+ TK D +      + A  
Sbjct: 99  YITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKIPKGKWDKHAKV 158

Query: 121 IEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKI 156
           + ++L  +      +++ SS++  G       + K+
Sbjct: 159 VRQTLNIDPE--DELILFSSETKKGKDEAWGAIKKM 192

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A Length = 195

 Score =  142 bits (360), Expect = 8e-44
 Identities = 47/156 (30%), Positives = 82/156 (52%), Gaps = 3/156 (1%)

Query: 1   MLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 60
           +LNAL  +  +   S  PG T++INF+ + +K   VDLPGYG+A   ++ +  W+ LV++
Sbjct: 39  LLNALFNR-KIAFVSKTPGKTRSINFYLVNSKYYFVDLPGYGYAKVSKKERMLWKRLVED 97

Query: 61  YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQ 120
           Y   R SL+ V LL+D +   +  D  ++  M+     + +VLTK D V   + A++  +
Sbjct: 98  YFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSLNIPFTIVLTKMDKVKMSERAKKLEE 157

Query: 121 IEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKI 156
             +           ++  SS +G GI  L  ++S +
Sbjct: 158 HRKVFSKYGEY--TIIPTSSVTGEGISELLDLISTL 191

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis} Length = 223

 Score =  140 bits (354), Expect = 2e-42
 Identities = 44/166 (26%), Positives = 69/166 (41%), Gaps = 8/166 (4%)

Query: 1   MLNALTRQWGVVRTSDKPGLTQTINFFKLG----TKLCLVDLPGYGFAYAKEEVKDAWEE 56
            +N L  Q  +   S  PG TQ IN+F +G        LVDLPGYG+A      K  WE+
Sbjct: 45  AINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQ 104

Query: 57  LVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVAR 116
           L+  Y+ TR  L  + L++D +  +   D  +I     +      +LTK D +   +   
Sbjct: 105 LLSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPTGKPIHSLLTKCDKLTRQESIN 164

Query: 117 RAMQIEESLKANNSLVQP----VMMVSSKSGAGIRSLRTVLSKIAR 158
                ++SL A           V + S+    G+     ++    R
Sbjct: 165 ALRATQKSLDAYRDAGYAGKLTVQLFSALKRTGLDDAHALIESWLR 210

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 Length = 190

 Score = 95.5 bits (238), Expect = 1e-25
 Identities = 30/168 (17%), Positives = 68/168 (40%), Gaps = 17/168 (10%)

Query: 2   LNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKE-EVKDAWEELVKE 60
           +  LT +   VR   +PG+T+ I   +      ++D+PG+GF      EV++  ++ +  
Sbjct: 18  IYRLTGKK--VRRGKRPGVTRKIIEIEWKNHK-IIDMPGFGFMMGLPKEVQERIKDEIVH 74

Query: 61  YVSTRV-SLKRVCLLIDTK-----------WGVKPRDHELISLMERSQTKYQVVLTKTDT 108
           ++     ++    L++D K            G  P D E    +        V + K D 
Sbjct: 75  FIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDK 134

Query: 109 VFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKI 156
           +  +      +  +  +  +  + +  + +S+K G  I  L+  + ++
Sbjct: 135 IKNVQEVINFLAEKFEVPLSE-IDKVFIPISAKFGDNIERLKNRIFEV 181

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* Length = 413

 Score = 63.2 bits (153), Expect = 1e-12
 Identities = 23/174 (13%), Positives = 48/174 (27%), Gaps = 30/174 (17%)

Query: 2   LNALTRQWG---VVRTSDKPGLTQTINFFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEE 56
           +N L            +    +T   + +K      +   DLPG G      +       
Sbjct: 86  INTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPD------- 138

Query: 57  LVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVAR 116
               Y+      +    +I +    K  D ++   +   + ++  V TK D+    +   
Sbjct: 139 ---TYLEKMKFYEYDFFIIISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADG 195

Query: 117 RAMQ-------------IEESLKANNSLVQPVMMVSSK--SGAGIRSLRTVLSK 155
                               + + N     P+ ++S+K         L   L  
Sbjct: 196 EPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLIS 249

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana} Length = 423

 Score = 40.8 bits (96), Expect = 6e-05
 Identities = 34/164 (20%), Positives = 68/164 (41%), Gaps = 28/164 (17%)

Query: 2   LNALTRQWGVVRTSDKPGLT-----QTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEE 56
           +NAL  Q  V   SD  G T     +++    +G  + LVD PG       ++V +    
Sbjct: 51  MNALVGQ-NVSIVSDYAGTTTDPVYKSMELHPIG-PVTLVDTPGL------DDVGELGRL 102

Query: 57  LVKEYVSTRVSLKRV---CLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPID 113
            V+     R    R     L+ D+     P + ++++L +  +  + VV+ K D +    
Sbjct: 103 RVE---KARRVFYRADCGILVTDSAPT--PYEDDVVNLFKEMEIPFVVVVNKIDVLGE-- 155

Query: 114 VARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 157
              +A +++   ++       V++VS+    G   +   +S+I 
Sbjct: 156 ---KAEELKGLYESRYEA--KVLLVSALQKKGFDDIGKTISEIL 194

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* Length = 301

 Score = 38.6 bits (89), Expect = 3e-04
 Identities = 24/124 (19%), Positives = 49/124 (39%), Gaps = 16/124 (12%)

Query: 24  INFFKLGTKLCLVDLPGYGFA----YAKEEVKDAWEELVKEYVSTRVSLKR--------- 70
           I    +  +L +VD PGYG A       + +    +E  + Y+     L R         
Sbjct: 69  IEERGVKLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVH 128

Query: 71  VCLLIDTKWGVKPRDHELISLMERSQTKYQV--VLTKTDTVFPIDVARRAMQIEESLKAN 128
            C    + +G   +  + ++ M+    K  +  V+ K DT+   +  R   +I + ++ +
Sbjct: 129 CCFYFISPFGHGLKPLD-VAFMKAIHNKVNIVPVIAKADTLTLKERERLKKRILDEIEEH 187

Query: 129 NSLV 132
           N  +
Sbjct: 188 NIKI 191

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} Length = 361

 Score = 38.7 bits (89), Expect = 4e-04
 Identities = 26/127 (20%), Positives = 49/127 (38%), Gaps = 16/127 (12%)

Query: 21  TQTINFFKLGTKLCLVDLPGYGFAYAKE----EVKDAWEELVKEYVSTRVSLKR------ 70
           T  I    +  +L +VD PGYG A         +    +E  + Y+     L R      
Sbjct: 85  TVEIEERGVKLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDN 144

Query: 71  ---VCLLIDTKWG--VKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESL 125
               C    + +G  +KP D   +  +  ++     V+ K DT+   +  R   +I + +
Sbjct: 145 RVHCCFYFISPFGHGLKPLDVAFMKAIH-NKVNIVPVIAKADTLTLKERERLKKRILDEI 203

Query: 126 KANNSLV 132
           + +N  +
Sbjct: 204 EEHNIKI 210

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	162
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	99.93
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	99.92
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.92
1wb1_A	482	Translation elongation factor SELB; selenocysteine	99.86
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.85
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	99.83
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	99.82
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.82
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.82
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	99.81
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.8
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	99.79
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.79
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	99.79
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.78
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.78
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	99.77
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	99.77
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.77
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.76
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.76
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.76
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.75
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	99.74
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	99.74
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	99.74
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.73
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.73
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.73
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	99.73
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	99.72
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.72
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	99.71
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	99.71
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	99.71
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.71
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.7
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	99.69
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	99.69
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	99.69
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.69
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	99.69
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	99.68
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	99.68
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	99.68
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	99.68
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	99.68
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	99.67
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	99.67
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	99.67
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	99.67
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	99.67
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.67
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	99.67
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	99.67
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	99.67
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	99.67
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	99.67
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	99.67
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	99.66
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	99.66
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	99.66
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	99.66
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.66
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	99.65
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	99.65
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	99.65
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	99.65
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	99.65
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	99.65
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	99.65
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	99.65
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	99.64
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	99.64
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	99.64
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	99.64
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	99.64
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	99.64
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	99.64
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.63
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	99.63
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	99.63
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	99.63
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	99.63
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	99.63
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	99.63
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	99.63
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	99.63
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	99.63
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	99.62
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	99.62
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	99.62
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	99.62
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	99.62
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	99.62
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	99.62
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	99.61
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	99.61
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	99.61
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	99.61
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	99.61
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	99.61
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	99.61
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	99.61
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	99.6
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	99.6
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	99.6
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	99.6
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	99.6
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	99.6
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	99.6
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	99.6
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	99.6
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.6
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	99.6
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	99.59
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	99.59
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	99.59
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	99.59
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	99.59
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	99.59
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	99.59
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	99.59
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	99.59
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	99.59
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	99.59
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.58
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	99.58
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	99.58
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	99.58
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	99.58
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	99.58
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.58
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	99.58
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	99.57
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	99.57
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	99.56
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	99.56
3llu_A	196	RAS-related GTP-binding protein C; structural geno	99.56
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	99.56
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	99.56
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	99.55
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	99.55
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	99.54
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	99.54
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	99.53
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.53
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	99.53
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	99.53
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	99.52
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	99.52
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	99.51
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	99.51
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	99.51
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	99.51
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	99.5
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	99.5
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	99.49
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	99.49
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	99.49
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.23
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	99.48
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	99.47
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	99.47
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	99.46
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	99.45
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	99.44
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	99.42
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	99.42
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	99.42
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	99.41
1wxq_A	397	GTP-binding protein; structural genomics, riken st	99.41
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	99.4
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	99.39
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	99.37
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	99.35
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	99.34
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	99.32
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	99.31
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	99.31
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.3
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	99.29
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	99.27
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	99.27
1nrj_B	218	SR-beta, signal recognition particle receptor beta	99.27
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	99.25
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	99.22
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	99.16
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.15
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	99.13
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.12
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	99.11
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	99.11
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	99.1
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	99.09
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	99.08
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.07
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	99.06
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	99.06
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	99.04
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	99.02
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	99.02
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	99.01
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	99.01
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	98.99
2ged_A	193	SR-beta, signal recognition particle receptor beta	98.95
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	98.92
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	98.9
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	98.87
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	98.86
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	98.86
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	98.84
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	98.81
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	98.81
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	98.8
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	98.74
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	98.73
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	98.58
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	98.41
2hf9_A	226	Probable hydrogenase nickel incorporation protein	98.41
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	98.25
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	98.21
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	98.13
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	97.84
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	97.73
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	97.51
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	97.45
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	97.38
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	97.23
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	97.22
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	96.72
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	96.69
2ph1_A	262	Nucleotide-binding protein; alpha-beta protein, st	95.43
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	95.42
2xxa_A	433	Signal recognition particle protein; protein trans	95.17
3bfv_A	271	CAPA1, CAPB2, membrane protein CAPA1, protein tyro	94.74
3cio_A	299	ETK, tyrosine-protein kinase ETK; WZC, escherichia	94.42
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	94.29
3ug7_A	349	Arsenical pump-driving ATPase; tail-anchored, memb	94.12
1wcv_1	257	SOJ, segregation protein; ATPase, bacterial, chrom	94.12
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	94.04
3cwq_A	209	Para family chromosome partitioning protein; alpha	93.98
2oze_A	298	ORF delta'; para, walker type atpases, DNA segrega	93.93
3la6_A	286	Tyrosine-protein kinase WZC; P-loop protein, nucle	93.48
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	93.43
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	93.36
3k9g_A	267	PF-32 protein; ssgcid, SBRI, decode biostructures,	92.9
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	92.75
1hyq_A	263	MIND, cell division inhibitor (MIND-1); MINC, FTSZ	92.45
3kjh_A	254	CO dehydrogenase/acetyl-COA synthase complex, acce	92.33
3q9l_A	260	Septum site-determining protein MIND; ATPase, bact	92.08
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	91.85
1g3q_A	237	MIND ATPase, cell division inhibitor; alpha-beta-a	91.84
3zq6_A	324	Putative arsenical pump-driving ATPase; tail-ancho	91.56
3end_A	307	Light-independent protochlorophyllide reductase ir	90.89
3io3_A	348	DEHA2D07832P; chaperone, membrane traffic, ATPase;	90.35
3ea0_A	245	ATPase, para family; alpha-beta-alpha sandwich, st	89.36
2xj4_A	286	MIPZ; replication, cell division, ATPase, WACA; 1.	86.84
2woo_A	329	ATPase GET3; tail-anchored, membrane protein, targ	85.83
3iqw_A	334	Tail-anchored protein targeting factor GET3; ATPas	85.33
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	85.26
2woj_A	354	ATPase GET3; tail-anchored, membrane protein, targ	84.37
3ez9_A	403	Para; DNA binding, winged-HTH, partition, biosynth	84.08
1ihu_A	589	Arsenical pump-driving ATPase; aluminum fluoride,	82.86
1byi_A	224	Dethiobiotin synthase; biotin synthesis, cyclo-lig	80.66
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	80.49

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=99.93  E-value=1.4e-24  Score=149.41  Aligned_cols=158  Identities=28%  Similarity=0.430  Sum_probs=129.1

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEeC----CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEee
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKLG----TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLID   76 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~~----~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid   76 (162)
                      |+|+|++....+.++..+|+|+....+...    .++.+|||||++........++.+..++..|+.....+|++++|+|
T Consensus        45 lin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d  124 (223)
T 4dhe_A           45 AINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMD  124 (223)
T ss_dssp             HHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEE
T ss_pred             HHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEe
Confidence            589999984357889999999988877765    6799999999987655555677778888899988888899999999


Q ss_pred             cCCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhc----CCCCCCeEEeecCCCCCHHHHHHH
Q 031293           77 TKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKAN----NSLVQPVMMVSSKSGAGIRSLRTV  152 (162)
Q Consensus        77 ~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~----~~~~~~i~~~Sa~~~~g~~~l~~~  152 (162)
                      +..+++..+..++..+...++|+++|+||+|+.+........+.+.+.+...    .....+++++||++|.|+++++++
T Consensus       125 ~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~  204 (223)
T 4dhe_A          125 ARRPLTELDRRMIEWFAPTGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGYAGKLTVQLFSALKRTGLDDAHAL  204 (223)
T ss_dssp             TTSCCCHHHHHHHHHHGGGCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTCCSCEEEEEEBTTTTBSHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHhcCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhcccCCCCeEEEeecCCCcCHHHHHHH
Confidence            9988888788888888888899999999999997776655555665555442    012358999999999999999999


Q ss_pred             HHHhhh
Q 031293          153 LSKIAR  158 (162)
Q Consensus       153 i~~~~~  158 (162)
                      |.+.+.
T Consensus       205 l~~~~~  210 (223)
T 4dhe_A          205 IESWLR  210 (223)
T ss_dssp             HHHHHC
T ss_pred             HHHhcC
Confidence            998765

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=99.92  E-value=1.5e-23  Score=141.11  Aligned_cols=155  Identities=30%  Similarity=0.510  Sum_probs=129.9

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEeCCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCC
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG   80 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~   80 (162)
                      |+|+|++. ....+++.+|+|........+.++.++||||++........++.+..+...++.....++++++|+|+..+
T Consensus        39 li~~l~~~-~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~  117 (195)
T 3pqc_A           39 LLNALFNR-KIAFVSKTPGKTRSINFYLVNSKYYFVDLPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIP  117 (195)
T ss_dssp             HHHHHHTS-CCSCCCSSCCCCCCEEEEEETTTEEEEECCCBSSSCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSC
T ss_pred             HHHHHHcC-ccccccCCCCCccCeEEEEECCcEEEEECCCCccccCChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCC
Confidence            57889888 46778899999999888888888999999998776666666777888888898888889999999999888


Q ss_pred             CCccHHHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293           81 VKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR  158 (162)
Q Consensus        81 ~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~  158 (162)
                      .......+..++...++|+++|+||+|+.+..+.....+.+++.+...+  ..+++++||++|.|+++++++|.+.++
T Consensus       118 ~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~gv~~l~~~l~~~l~  193 (195)
T 3pqc_A          118 PQDSDLMMVEWMKSLNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYG--EYTIIPTSSVTGEGISELLDLISTLLK  193 (195)
T ss_dssp             CCHHHHHHHHHHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSC--CSCEEECCTTTCTTHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHcCCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcC--CCceEEEecCCCCCHHHHHHHHHHHhh
Confidence            7777777788888889999999999999876666666666666666433  259999999999999999999998764

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.92  E-value=1.1e-23  Score=142.17  Aligned_cols=156  Identities=27%  Similarity=0.485  Sum_probs=117.1

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEeCCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCC
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG   80 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~   80 (162)
                      |+|+|++......+++.+|+|.....+..+.++.++||||++........++.+......++.....+|++++|+|+..+
T Consensus        39 li~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~  118 (195)
T 1svi_A           39 FINSLINRKNLARTSSKPGKTQTLNFYIINDELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHA  118 (195)
T ss_dssp             HHHHHHTC-------------CCEEEEEETTTEEEEECCCBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSC
T ss_pred             HHHHHhCCCCccccCCCCCceeeEEEEEECCcEEEEECCCCCccccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCC
Confidence            57889888445678899999999888888888999999999877666666777777888888888788999999999988


Q ss_pred             CCccHHHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293           81 VKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR  158 (162)
Q Consensus        81 ~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~  158 (162)
                      .+..+.+++.++...+.|+++|+||+|+.+..+.....+.+++.+...  ...+++++||++|.|+++++++|.+.++
T Consensus       119 ~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~gv~~l~~~l~~~l~  194 (195)
T 1svi_A          119 PSNDDVQMYEFLKYYGIPVIVIATKADKIPKGKWDKHAKVVRQTLNID--PEDELILFSSETKKGKDEAWGAIKKMIN  194 (195)
T ss_dssp             CCHHHHHHHHHHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCC--TTSEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHcCCCEEEEEECcccCChHHHHHHHHHHHHHHccc--CCCceEEEEccCCCCHHHHHHHHHHHhc
Confidence            777777777888878899999999999987766655555665545432  2358999999999999999999987654

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=99.86  E-value=3.6e-21  Score=146.07  Aligned_cols=145  Identities=26%  Similarity=0.387  Sum_probs=106.6

Q ss_pred             ChhcccCCCC-----ceeccCCCCcceEEEEE--Ee-CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeE
Q 031293            1 MLNALTRQWG-----VVRTSDKPGLTQTINFF--KL-GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVC   72 (162)
Q Consensus         1 lin~L~~~~~-----~~~~~~~~g~t~~~~~~--~~-~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi   72 (162)
                      |+|+|++...     ....+..+|+|.+..+.  .. +..+.++|||||             +.+...+......+|+++
T Consensus        35 Li~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh-------------~~~~~~~~~~~~~aD~~i  101 (482)
T 1wb1_A           35 LSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGH-------------ADLIRAVVSAADIIDLAL  101 (482)
T ss_dssp             HHHHHHTTC--------------------CCCEEEETTEEEEECCCSSH-------------HHHHHHHHHHTTSCCEEE
T ss_pred             HHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCCh-------------HHHHHHHHHHHhhCCEEE
Confidence            5788887731     13456678888877643  33 447999999999             777888888888899999


Q ss_pred             EEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhc-CCCCCCeEEeecCCCCCHHHHHH
Q 031293           73 LLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKAN-NSLVQPVMMVSSKSGAGIRSLRT  151 (162)
Q Consensus        73 ~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~Sa~~~~g~~~l~~  151 (162)
                      +|+|+.++...++.+++..+...++|+++|+||+|+.++...+...+.+++.+... +....+++++||++|.|+++|++
T Consensus       102 lVvda~~g~~~qt~e~l~~~~~~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~vSA~~g~gI~~L~~  181 (482)
T 1wb1_A          102 IVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKN  181 (482)
T ss_dssp             EEEETTTCSCHHHHHHHHHHHHTTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTTTCTTHHHHHH
T ss_pred             EEEecCCCccHHHHHHHHHHHHcCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEEEEECcCCCCHHHHHH
Confidence            99999998888888888888888999999999999997666666666777766654 33346999999999999999999


Q ss_pred             HHHHhhh
Q 031293          152 VLSKIAR  158 (162)
Q Consensus       152 ~i~~~~~  158 (162)
                      +|.+.++
T Consensus       182 ~L~~~i~  188 (482)
T 1wb1_A          182 LIITTLN  188 (482)
T ss_dssp             HHHHHHH
T ss_pred             HHHHhhc
Confidence            9988654

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.85  E-value=1.2e-20  Score=135.95  Aligned_cols=150  Identities=21%  Similarity=0.270  Sum_probs=109.1

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEE--EEe--CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEee
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINF--FKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLID   76 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~--~~~--~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid   76 (162)
                      |+|+|++. ..+.+++.|++|+....  +..  +.++.++||||++.........+.+......++   ..+|++++|+|
T Consensus        26 Lin~l~g~-~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l---~~aD~il~VvD  101 (308)
T 3iev_A           26 LLNNLLGT-KVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSL---EEADVILFMID  101 (308)
T ss_dssp             HHHHHHTS-CCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHH---HHCSEEEEEEE
T ss_pred             HHHHHhCC-CccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHHHHHHh---hcCCEEEEEEe
Confidence            68999999 57788999999986553  233  446999999999664322223333333333443   45699999999


Q ss_pred             cCCCCCccHHHH-HHHHHHhCCceEEEEeccCCC-CcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHH
Q 031293           77 TKWGVKPRDHEL-ISLMERSQTKYQVVLTKTDTV-FPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLS  154 (162)
Q Consensus        77 ~~~~~~~~~~~~-~~~l~~~~~~~ivv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~  154 (162)
                      +..+.+..+... ++.+...++|+++|+||+|+. +........+.+.+.+   + ...+++++||++|.|+++++++|.
T Consensus       102 ~~~~~~~~~~~~~~~~l~~~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~---~-~~~~i~~vSA~~g~gv~~L~~~l~  177 (308)
T 3iev_A          102 ATEGWRPRDEEIYQNFIKPLNKPVIVVINKIDKIGPAKNVLPLIDEIHKKH---P-ELTEIVPISALKGANLDELVKTIL  177 (308)
T ss_dssp             TTTBSCHHHHHHHHHHTGGGCCCEEEEEECGGGSSSGGGGHHHHHHHHHHC---T-TCCCEEECBTTTTBSHHHHHHHHH
T ss_pred             CCCCCCchhHHHHHHHHHhcCCCEEEEEECccCCCCHHHHHHHHHHHHHhc---c-CCCeEEEEeCCCCCCHHHHHHHHH
Confidence            998877777776 777777789999999999998 5554444444443332   1 235899999999999999999998


Q ss_pred             Hhhh
Q 031293          155 KIAR  158 (162)
Q Consensus       155 ~~~~  158 (162)
                      +.++
T Consensus       178 ~~l~  181 (308)
T 3iev_A          178 KYLP  181 (308)
T ss_dssp             HHSC
T ss_pred             HhCc
Confidence            8764

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=99.83  E-value=1e-19  Score=135.81  Aligned_cols=145  Identities=19%  Similarity=0.287  Sum_probs=109.1

Q ss_pred             ChhcccCCCC-ceeccCCCCcceEEEEEE--e------------------------CCceEEEcCCCCcccccCHHHHHH
Q 031293            1 MLNALTRQWG-VVRTSDKPGLTQTINFFK--L------------------------GTKLCLVDLPGYGFAYAKEEVKDA   53 (162)
Q Consensus         1 lin~L~~~~~-~~~~~~~~g~t~~~~~~~--~------------------------~~~~~ivDtpG~~~~~~~~~~~~~   53 (162)
                      |+|+|++... ....+..+|+|.+..+..  +                        ..++.++|||||            
T Consensus        26 Li~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiDtPGh------------   93 (410)
T 1kk1_A           26 LTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGH------------   93 (410)
T ss_dssp             HHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEEECSSH------------
T ss_pred             HHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEEEECCCh------------
Confidence            5778876621 123445688887665421  1                        145899999999            


Q ss_pred             HHHHHHHHHhcCcccceeEEEeecCCCC-CccHHHHHHHHHHhCC-ceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCC
Q 031293           54 WEELVKEYVSTRVSLKRVCLLIDTKWGV-KPRDHELISLMERSQT-KYQVVLTKTDTVFPIDVARRAMQIEESLKANNSL  131 (162)
Q Consensus        54 ~~~~~~~~~~~~~~~~~vi~vid~~~~~-~~~~~~~~~~l~~~~~-~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~  131 (162)
                       ..+...++++...+|++++|+|+.++. ..++.+++..+...+. |+++|+||+|+.+........+.+++.+......
T Consensus        94 -~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~  172 (410)
T 1kk1_A           94 -EALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDKEKALENYRQIKEFIEGTVAE  172 (410)
T ss_dssp             -HHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTSTTT
T ss_pred             -HHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEECccCCCHHHHHHHHHHHHHHHHhcCcC
Confidence             778889999999999999999999886 6677777777766665 6899999999987665555556666666654334


Q ss_pred             CCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293          132 VQPVMMVSSKSGAGIRSLRTVLSKIAR  158 (162)
Q Consensus       132 ~~~i~~~Sa~~~~g~~~l~~~i~~~~~  158 (162)
                      ..+++++||++|.|+++|+++|.+.++
T Consensus       173 ~~~~i~vSA~~g~gi~~L~~~l~~~~~  199 (410)
T 1kk1_A          173 NAPIIPISALHGANIDVLVKAIEDFIP  199 (410)
T ss_dssp             TCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             CCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence            579999999999999999999987553

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.82  E-value=1.1e-19  Score=135.54  Aligned_cols=145  Identities=21%  Similarity=0.271  Sum_probs=97.9

Q ss_pred             ChhcccCCCC-ceeccCCCCcceEEEEEEe--------------------------CCceEEEcCCCCcccccCHHHHHH
Q 031293            1 MLNALTRQWG-VVRTSDKPGLTQTINFFKL--------------------------GTKLCLVDLPGYGFAYAKEEVKDA   53 (162)
Q Consensus         1 lin~L~~~~~-~~~~~~~~g~t~~~~~~~~--------------------------~~~~~ivDtpG~~~~~~~~~~~~~   53 (162)
                      |+|+|++... ....+..+|+|.++.+...                          ...+.++|||||            
T Consensus        24 Li~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiDtPGh------------   91 (408)
T 1s0u_A           24 LTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFVDSPGH------------   91 (408)
T ss_dssp             HHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEEECSSH------------
T ss_pred             HHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEEECCCH------------
Confidence            5778886621 1233446788876654211                          145899999999            


Q ss_pred             HHHHHHHHHhcCcccceeEEEeecCCCC-CccHHHHHHHHHHhCC-ceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCC
Q 031293           54 WEELVKEYVSTRVSLKRVCLLIDTKWGV-KPRDHELISLMERSQT-KYQVVLTKTDTVFPIDVARRAMQIEESLKANNSL  131 (162)
Q Consensus        54 ~~~~~~~~~~~~~~~~~vi~vid~~~~~-~~~~~~~~~~l~~~~~-~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~  131 (162)
                       +.+...+.++...+|++++|+|++++. ..++.+++..+...+. |+++|+||+|+.+........+.+++.+......
T Consensus        92 -~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~~~~iivv~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~  170 (408)
T 1s0u_A           92 -ETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDLVDEKQAEENYEQIKEFVKGTIAE  170 (408)
T ss_dssp             -HHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECTTSSCTTTTTTHHHHHHHHHTTSTTT
T ss_pred             -HHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcCCCeEEEEEEccCCCCHHHHHHHHHHHHHHHhhcCCC
Confidence             788888999999999999999999886 6677777777766664 6999999999986543333344555566544334


Q ss_pred             CCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293          132 VQPVMMVSSKSGAGIRSLRTVLSKIAR  158 (162)
Q Consensus       132 ~~~i~~~Sa~~~~g~~~l~~~i~~~~~  158 (162)
                      ..+++++||++|.|+++|+++|.+.++
T Consensus       171 ~~~~i~vSA~~g~gi~~L~~~l~~~i~  197 (408)
T 1s0u_A          171 NAPIIPISAHHEANIDVLLKAIQDFIP  197 (408)
T ss_dssp             TCCEEEC------CHHHHHHHHHHHSC
T ss_pred             CCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence            569999999999999999999987553

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.82  E-value=4.6e-20  Score=132.42  Aligned_cols=143  Identities=17%  Similarity=0.167  Sum_probs=102.6

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEE--EEe-CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINF--FKL-GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT   77 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~--~~~-~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~   77 (162)
                      |+|+|++. ..+.++..|++|++...  +.. +.++.++||||+....  ....+.   +........+.+|++++|+|+
T Consensus        23 Lln~l~g~-~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~--~~l~~~---~~~~~~~~l~~ad~il~VvD~   96 (301)
T 1wf3_A           23 LLNNLLGV-KVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPM--DALGEF---MDQEVYEALADVNAVVWVVDL   96 (301)
T ss_dssp             HHHHHHTS-CCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCC--SHHHHH---HHHHHHHHTSSCSEEEEEEET
T ss_pred             HHHHHhCC-ceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchh--hHHHHH---HHHHHHHHHhcCCEEEEEEEC
Confidence            58999998 56778999999986443  222 4569999999985431  111222   233333445667999999999


Q ss_pred             CCCCCccHHHHHHHHHHh--CCceEEEEeccCCCCcHH-HHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHH
Q 031293           78 KWGVKPRDHELISLMERS--QTKYQVVLTKTDTVFPID-VARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLS  154 (162)
Q Consensus        78 ~~~~~~~~~~~~~~l~~~--~~~~ivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~  154 (162)
                      ..+++..+.+++..+...  +.|+++|+||+|+..... ..   +.+++.     ....+++++||++|.|++++++.|.
T Consensus        97 ~~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~---~~~~~~-----~~~~~~~~iSA~~g~gv~~l~~~l~  168 (301)
T 1wf3_A           97 RHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKYPEEAM---KAYHEL-----LPEAEPRMLSALDERQVAELKADLL  168 (301)
T ss_dssp             TSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCSSHHHHH---HHHHHT-----STTSEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCCChHHHHHHHHHHhhcCCCCEEEEEECcccCCchHHHH---HHHHHh-----cCcCcEEEEeCCCCCCHHHHHHHHH
Confidence            988877777777777776  899999999999986544 22   222221     2234799999999999999999998


Q ss_pred             Hhh
Q 031293          155 KIA  157 (162)
Q Consensus       155 ~~~  157 (162)
                      +.+
T Consensus       169 ~~l  171 (301)
T 1wf3_A          169 ALM  171 (301)
T ss_dssp             TTC
T ss_pred             Hhc
Confidence            765

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.82  E-value=1.8e-20  Score=141.53  Aligned_cols=153  Identities=16%  Similarity=0.192  Sum_probs=103.3

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEE--EEe-CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINF--FKL-GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT   77 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~--~~~-~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~   77 (162)
                      |+|+|++. ....++..||+|++...  +.. +.++.+|||||++........++.+..  ...+...+.+|++++|+|+
T Consensus       211 lin~l~~~-~~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~--~~~~~~~~~ad~~llviD~  287 (456)
T 4dcu_A          211 LVNAMLGE-ERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSV--LRALKAIDRSEVVAVVLDG  287 (456)
T ss_dssp             HHHHHHTS-TTEEECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHH--HHHHHHHHHCSEEEEEEET
T ss_pred             HHHHHhCC-CccccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHH--HHHHHHHhhCCEEEEEEeC
Confidence            57899988 46789999999987532  233 457999999997553211111122221  2222233456999999999


Q ss_pred             CCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcH--HHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHH
Q 031293           78 KWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPI--DVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSK  155 (162)
Q Consensus        78 ~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~  155 (162)
                      .+++...+.+++..+...++|+++|+||+|+.+..  ..++..+.+++.+...  ...+++++||++|.|++++++++.+
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~SA~~g~gv~~l~~~i~~  365 (456)
T 4dcu_A          288 EEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFL--DYAPILFMSALTKKRIHTLMPAIIK  365 (456)
T ss_dssp             TTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGG--TTSCEEECCTTTCTTGGGHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHHcCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccC--CCCCEEEEcCCCCcCHHHHHHHHHH
Confidence            99998888888888888899999999999998533  2344444454444332  2369999999999999999999987


Q ss_pred             hhh
Q 031293          156 IAR  158 (162)
Q Consensus       156 ~~~  158 (162)
                      .+.
T Consensus       366 ~~~  368 (456)
T 4dcu_A          366 ASE  368 (456)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            664

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=99.81  E-value=5.3e-19  Score=132.86  Aligned_cols=124  Identities=17%  Similarity=0.158  Sum_probs=94.4

Q ss_pred             cCCCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCC-------cc
Q 031293           15 SDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVK-------PR   84 (162)
Q Consensus        15 ~~~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~-------~~   84 (162)
                      +..+|+|.+..+..+   +.++.++|||||             +++.+.+..+.+.+|++++|+|+.++..       .+
T Consensus        76 er~~GiTid~~~~~~~~~~~~~~iiDTPGh-------------~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~q  142 (439)
T 3j2k_7           76 ERDKGKTVEVGRAYFETEKKHFTILDAPGH-------------KSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQ  142 (439)
T ss_pred             HhhcCceEEEeEEEEecCCeEEEEEECCCh-------------HHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCch
Confidence            345788988876544   557999999999             7778888888888999999999998764       56


Q ss_pred             HHHHHHHHHHhCCc-eEEEEeccCCCCc----HHHHHHHHHHHHHHHhcCCC---CCCeEEeecCCCCCHHHHHH
Q 031293           85 DHELISLMERSQTK-YQVVLTKTDTVFP----IDVARRAMQIEESLKANNSL---VQPVMMVSSKSGAGIRSLRT  151 (162)
Q Consensus        85 ~~~~~~~l~~~~~~-~ivv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~---~~~i~~~Sa~~~~g~~~l~~  151 (162)
                      +.+++..+...++| +++|+||+|+.+.    ...+...+.+.+.+...+..   ..+++++||++|.|++++.+
T Consensus       143 t~e~l~~~~~~~v~~iIvviNK~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~  217 (439)
T 3j2k_7          143 TREHAMLAKTAGVKHLIVLINKMDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD  217 (439)
T ss_pred             HHHHHHHHHHcCCCeEEEEeecCCCcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence            77788888878888 8999999999642    22344445555555444432   36899999999999998543

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.80  E-value=5.2e-20  Score=138.35  Aligned_cols=153  Identities=16%  Similarity=0.178  Sum_probs=98.9

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEE--Ee-CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFF--KL-GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT   77 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~--~~-~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~   77 (162)
                      |+|+|++. ....++..||+|++....  .. +.++.+|||||+..........+.+..  ...+...+.+|++++|+|+
T Consensus       191 Lin~l~~~-~~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~--~~~~~~~~~ad~~llv~D~  267 (436)
T 2hjg_A          191 LVNAMLGE-ERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSV--LRALKAIDRSEVVAVVLDG  267 (436)
T ss_dssp             HHHHHHTS-TTEEEC---------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHH--HHHHHHHHHCSEEEEEEET
T ss_pred             HHHHHhCC-CceeecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHH--HHHHHHHHhCCEEEEEEcC
Confidence            58999998 567789999999876532  33 456999999998543210000111221  1122233446999999999


Q ss_pred             CCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcHH--HHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHH
Q 031293           78 KWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPID--VARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSK  155 (162)
Q Consensus        78 ~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~  155 (162)
                      .++.+.++..++..+...++|+++|+||+|+.+...  ..+..+.+.+.+...  ...+++++||++|.|++++++.+.+
T Consensus       268 ~~~~s~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~SA~tg~~v~~l~~~i~~  345 (436)
T 2hjg_A          268 EEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFL--DYAPILFMSALTKKRIHTLMPAIIK  345 (436)
T ss_dssp             TTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGG--TTSCEEECCTTTCTTGGGHHHHHHH
T ss_pred             CcCCcHHHHHHHHHHHHcCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccC--CCCCEEEEecccCCCHHHHHHHHHH
Confidence            999888888888888778899999999999986433  233334444443322  2369999999999999999999987


Q ss_pred             hhh
Q 031293          156 IAR  158 (162)
Q Consensus       156 ~~~  158 (162)
                      .+.
T Consensus       346 ~~~  348 (436)
T 2hjg_A          346 ASE  348 (436)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            654

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=99.79  E-value=3.8e-19  Score=130.87  Aligned_cols=127  Identities=16%  Similarity=0.203  Sum_probs=99.6

Q ss_pred             CCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHH
Q 031293           17 KPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLME   93 (162)
Q Consensus        17 ~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~   93 (162)
                      .+|+|.+..++.+   +.++.++|||||             ++++..+..+.+.+|++++|+| ..+...+..+++..+.
T Consensus        43 ~~giTi~~~~~~~~~~~~~i~iiDtPGh-------------~~f~~~~~~~~~~aD~ailVvd-~~g~~~qt~e~~~~~~  108 (370)
T 2elf_A           43 KKGTSSDITMYNNDKEGRNMVFVDAHSY-------------PKTLKSLITALNISDIAVLCIP-PQGLDAHTGECIIALD  108 (370)
T ss_dssp             EEEEESSSEEEEECSSSSEEEEEECTTT-------------TTCHHHHHHHHHTCSEEEEEEC-TTCCCHHHHHHHHHHH
T ss_pred             hCCEEEEeeEEEEecCCeEEEEEECCCh-------------HHHHHHHHHHHHHCCEEEEEEc-CCCCcHHHHHHHHHHH
Confidence            3466666665544   456999999999             5566677777788899999999 8888888888888888


Q ss_pred             HhCCce-EEEEe-ccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEE--eecCC---CCCHHHHHHHHHHhhh
Q 031293           94 RSQTKY-QVVLT-KTDTVFPIDVARRAMQIEESLKANNSLVQPVMM--VSSKS---GAGIRSLRTVLSKIAR  158 (162)
Q Consensus        94 ~~~~~~-ivv~n-K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--~Sa~~---~~g~~~l~~~i~~~~~  158 (162)
                      ..++|. ++++| |+|+ +....+...+.+++.+...+....++++  +||++   +.|+++|++.|.+.++
T Consensus       109 ~~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~gi~~L~~~l~~~~~  179 (370)
T 2elf_A          109 LLGFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEGVDELKARINEVAE  179 (370)
T ss_dssp             HTTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTTHHHHHHHHHHHHH
T ss_pred             HcCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCCCHHHHHHHHHhhcc
Confidence            889997 99999 9999 6555555556666666655444469999  99999   9999999999987654

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.79  E-value=4.6e-20  Score=129.66  Aligned_cols=145  Identities=22%  Similarity=0.189  Sum_probs=97.0

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEE--Ee-CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFF--KL-GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT   77 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~--~~-~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~   77 (162)
                      |+|+|++.  ...+++.||+|.+....  .. +..+.++||||+.............+.+...++.. ..+|++++|+|+
T Consensus        17 L~n~L~g~--~~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~-~~~d~vi~VvDa   93 (256)
T 3iby_A           17 LFNALTNA--NQRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVID-LEYDCIINVIDA   93 (256)
T ss_dssp             HHHHHHTT--SEEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHHHH-SCCSEEEEEEEG
T ss_pred             HHHHHHCC--CCCccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHHhh-CCCCEEEEEeeC
Confidence            58999998  47789999999766543  33 44699999999855432100001112344455432 457999999999


Q ss_pred             CCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHh
Q 031293           78 KWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKI  156 (162)
Q Consensus        78 ~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~  156 (162)
                      ...  .....+...+.+.++|+++|+||+|+..........+.+.+.+   +   .+++++||++|.|++++++++.+.
T Consensus        94 s~~--~~~~~l~~~l~~~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~l---g---~~vi~~SA~~g~gi~el~~~i~~~  164 (256)
T 3iby_A           94 CHL--ERHLYLTSQLFELGKPVVVALNMMDIAEHRGISIDTEKLESLL---G---CSVIPIQAHKNIGIPALQQSLLHC  164 (256)
T ss_dssp             GGH--HHHHHHHHHHTTSCSCEEEEEECHHHHHHTTCEECHHHHHHHH---C---SCEEECBGGGTBSHHHHHHHHHTC
T ss_pred             CCc--hhHHHHHHHHHHcCCCEEEEEEChhcCCcCCcHHHHHHHHHHc---C---CCEEEEECCCCCCHHHHHHHHHhh
Confidence            862  3334455666677899999999999863322211122333333   2   499999999999999999999865

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=99.79  E-value=1.2e-17  Score=111.81  Aligned_cols=153  Identities=21%  Similarity=0.367  Sum_probs=104.9

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEeCCceEEEcCCCCccccc-CHHHHHHHHHHHHHHHhc-CcccceeEEEeecC
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYA-KEEVKDAWEELVKEYVST-RVSLKRVCLLIDTK   78 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~ivDtpG~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~vi~vid~~   78 (162)
                      |+|+|++.  ...++..||+|.....+..+ ++.++||||++.... ....++.+......++.. ...+++++++.|+.
T Consensus        17 li~~l~~~--~~~~~~~~~~t~~~~~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~   93 (190)
T 2cxx_A           17 LIYRLTGK--KVRRGKRPGVTRKIIEIEWK-NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGK   93 (190)
T ss_dssp             HHHHHHSC--CCSSSSSTTCTTSCEEEEET-TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETT
T ss_pred             HHHHHhCc--CCccCCCCCccceeEEEecC-CEEEEECCCccccccCCHHHHHHHHHHHHHHHHhhhccCCEEEEEEcch
Confidence            57888887  35567788988877777666 699999999865432 333456667777777776 77788999999976


Q ss_pred             CC-----------CCccHHHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCC-CCCCeEEeecCCCCCH
Q 031293           79 WG-----------VKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNS-LVQPVMMVSSKSGAGI  146 (162)
Q Consensus        79 ~~-----------~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~Sa~~~~g~  146 (162)
                      ..           ....+.+++..+...++|+++|+||+|+.+..  ....+.+.+.++.... ...+++++||++|.|+
T Consensus        94 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v  171 (190)
T 2cxx_A           94 AAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV--QEVINFLAEKFEVPLSEIDKVFIPISAKFGDNI  171 (190)
T ss_dssp             HHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH--HHHHHHHHHHHTCCGGGHHHHEEECCTTTCTTH
T ss_pred             hhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH--HHHHHHHHHHhhhhhhccCCcEEEEecCCCCCH
Confidence            41           11222334455555689999999999998654  2222333333321000 0125799999999999


Q ss_pred             HHHHHHHHHhhh
Q 031293          147 RSLRTVLSKIAR  158 (162)
Q Consensus       147 ~~l~~~i~~~~~  158 (162)
                      ++++++|.+.+.
T Consensus       172 ~~l~~~l~~~~~  183 (190)
T 2cxx_A          172 ERLKNRIFEVIR  183 (190)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcc
Confidence            999999988764

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.78  E-value=9.3e-19  Score=131.63  Aligned_cols=145  Identities=17%  Similarity=0.217  Sum_probs=90.7

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT   77 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~   77 (162)
                      |+|+|++. ..+.+++.||+|++......   +.++.+|||||+..... ....+.+......++   +.+|++++|+|+
T Consensus        17 L~nrl~~~-~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~-~~~~~~~~~~~~~~~---~~ad~il~V~D~   91 (439)
T 1mky_A           17 LFNKLVKK-KKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQ-DIISQKMKEVTLNMI---READLVLFVVDG   91 (439)
T ss_dssp             HHHHHHC---------------CCSEEEEEETTEEEEEEECTTTTSSGG-GCCCHHHHHHHHHHH---TTCSEEEEEEET
T ss_pred             HHHHHhCC-CCceecCCCCCccceeeEEEEECCeEEEEEECCCcccccc-chHHHHHHHHHHHHH---HhCCEEEEEEEC
Confidence            68999998 46779999999998765433   55699999999853210 111122223333343   456999999999


Q ss_pred             CCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHH-HHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHh
Q 031293           78 KWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQI-EESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKI  156 (162)
Q Consensus        78 ~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~  156 (162)
                      +.+++..+.++..+++..++|+++|+||+|+...  ..   ... .+.. ..+  ..+++++||++|.|++++++++.+.
T Consensus        92 ~~~~~~~d~~i~~~l~~~~~p~ilv~NK~D~~~~--~~---~~~~~~~~-~lg--~~~~~~iSA~~g~gv~~L~~~i~~~  163 (439)
T 1mky_A           92 KRGITKEDESLADFLRKSTVDTILVANKAENLRE--FE---REVKPELY-SLG--FGEPIPVSAEHNINLDTMLETIIKK  163 (439)
T ss_dssp             TTCCCHHHHHHHHHHHHHTCCEEEEEESCCSHHH--HH---HHTHHHHG-GGS--SCSCEECBTTTTBSHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCccc--cH---HHHHHHHH-hcC--CCCEEEEeccCCCCHHHHHHHHHHh
Confidence            9988888878888888889999999999998522  11   111 2222 222  2378999999999999999999876


Q ss_pred             hh
Q 031293          157 AR  158 (162)
Q Consensus       157 ~~  158 (162)
                      +.
T Consensus       164 l~  165 (439)
T 1mky_A          164 LE  165 (439)
T ss_dssp             HH
T ss_pred             cc
Confidence            64

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.78  E-value=8.3e-20  Score=129.56  Aligned_cols=147  Identities=19%  Similarity=0.188  Sum_probs=98.2

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT   77 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~   77 (162)
                      |+|+|++.  ...+++.||+|.+.....+   +..+.+|||||+.............+.....++. ...+|++++|+|+
T Consensus        19 Lin~l~g~--~~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~-~~~~d~ii~VvD~   95 (274)
T 3i8s_A           19 LFNQLTGS--RQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYIL-SGDADLLINVVDA   95 (274)
T ss_dssp             HHHHHHTT--CEEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHHHH-HTCCSEEEEEEEG
T ss_pred             HHHHHhCC--CcccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHHHh-hcCCCEEEEEecC
Confidence            68999999  3688999999987765433   5579999999986543110000011223333432 3456999999999


Q ss_pred             CCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293           78 KWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  157 (162)
Q Consensus        78 ~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~  157 (162)
                      ...  .....+...+.+.++|+++|+||+|+.+........+.+.+.+   +   .+++++||++|.|+++++++|.+.+
T Consensus        96 ~~~--~~~~~~~~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~l---g---~~~i~~SA~~g~gi~el~~~i~~~~  167 (274)
T 3i8s_A           96 SNL--ERNLYLTLQLLELGIPCIVALNMLDIAEKQNIRIEIDALSARL---G---CPVIPLVSTRGRGIEALKLAIDRYK  167 (274)
T ss_dssp             GGH--HHHHHHHHHHHHHTCCEEEEEECHHHHHHTTEEECHHHHHHHH---T---SCEEECCCGGGHHHHHHHHHHHTCC
T ss_pred             CCh--HHHHHHHHHHHhcCCCEEEEEECccchhhhhHHHHHHHHHHhc---C---CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence            862  3344455667777999999999999853222111122333333   2   4999999999999999999998765


Q ss_pred             h
Q 031293          158 R  158 (162)
Q Consensus       158 ~  158 (162)
                      +
T Consensus       168 ~  168 (274)
T 3i8s_A          168 A  168 (274)
T ss_dssp             C
T ss_pred             h
Confidence            3

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=99.77  E-value=4.4e-18  Score=126.68  Aligned_cols=115  Identities=19%  Similarity=0.232  Sum_probs=94.2

Q ss_pred             CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCC-CccHHHHHHHHHHhCC-ceEEEEeccCC
Q 031293           31 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV-KPRDHELISLMERSQT-KYQVVLTKTDT  108 (162)
Q Consensus        31 ~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~-~~~~~~~~~~l~~~~~-~~ivv~nK~Dl  108 (162)
                      .++.++|||||             +.+...+......+|++++|+|+.++. ..+..+++..+...+. |+++|+||+|+
T Consensus        75 ~~~~iiDtPGh-------------~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl  141 (403)
T 3sjy_A           75 RRISFIDAPGH-------------EVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDV  141 (403)
T ss_dssp             EEEEEEECCCC-------------GGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGG
T ss_pred             ceEEEEECCCc-------------HHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECccc
Confidence            45899999999             666777777778889999999999886 6667777777776664 89999999999


Q ss_pred             CCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293          109 VFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR  158 (162)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~  158 (162)
                      .+........+.+.+.+...+....+++++||++|.|+++|+++|.+.++
T Consensus       142 ~~~~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~  191 (403)
T 3sjy_A          142 VSKEEALSQYRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIK  191 (403)
T ss_dssp             SCHHHHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             cchHHHHHHHHHHHHHHHhhCCCCCEEEEEECCCCcChHHHHHHHHHhCC
Confidence            98776666667777777665555579999999999999999999987553

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=99.77  E-value=4.6e-18  Score=120.59  Aligned_cols=156  Identities=18%  Similarity=0.257  Sum_probs=90.4

Q ss_pred             ChhcccCCCCceeccC-------CCCcceEEEEEEe--CC---ceEEEcCCCCcccccC----HHHHHHHHHHHHHHHhc
Q 031293            1 MLNALTRQWGVVRTSD-------KPGLTQTINFFKL--GT---KLCLVDLPGYGFAYAK----EEVKDAWEELVKEYVST   64 (162)
Q Consensus         1 lin~L~~~~~~~~~~~-------~~g~t~~~~~~~~--~~---~~~ivDtpG~~~~~~~----~~~~~~~~~~~~~~~~~   64 (162)
                      |+|+|++.+ ....+.       .++++.+.....+  +.   ++.++||||+|+....    ....+........|+..
T Consensus        24 Lin~L~~~~-~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~~i~~~i~~~~~~~l~~  102 (274)
T 3t5d_A           24 LINSLFLTD-LYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNA  102 (274)
T ss_dssp             HHHHHSSSC-C---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCC-ccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHHHHHHHHHHHHHHHHHh
Confidence            588988883 333222       3333333333333  22   6899999999765321    11111122222344433


Q ss_pred             C----------cccceeEEEeec-CCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCC
Q 031293           65 R----------VSLKRVCLLIDT-KWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQ  133 (162)
Q Consensus        65 ~----------~~~~~vi~vid~-~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  133 (162)
                      .          ..+|++++++++ ..++...+.++++.+.. ++|+++|+||+|+....+.....+.+.+.+...+.   
T Consensus       103 ~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~-~~pvi~V~nK~D~~~~~e~~~~~~~i~~~l~~~~i---  178 (274)
T 3t5d_A          103 ESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-KVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKI---  178 (274)
T ss_dssp             HHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT-TSCEEEEESSGGGSCHHHHHHHHHHHHHHHHHTTC---
T ss_pred             hcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc-cCCEEEEEeccCCCCHHHHHHHHHHHHHHHHHcCC---
Confidence            1          225677777754 55778888888888876 89999999999999877777766777777766553   


Q ss_pred             CeEEeecCCCCCHHHHHHHHHHhhhhhc
Q 031293          134 PVMMVSSKSGAGIRSLRTVLSKIARFAK  161 (162)
Q Consensus       134 ~i~~~Sa~~~~g~~~l~~~i~~~~~~~k  161 (162)
                      +++++||.++.|+++++++|.+.++|.-
T Consensus       179 ~v~~~sa~~~~~~~~l~~~l~~~~p~~v  206 (274)
T 3t5d_A          179 KIYEFPETDDEEENKLVKKIKDRLPLAV  206 (274)
T ss_dssp             CCCCC-----------CHHHHHTCSEEC
T ss_pred             eEEcCCCCCChhHHHHHHHHhcCCCcEE
Confidence            7889999999999999999999887653

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.77  E-value=4.9e-19  Score=133.03  Aligned_cols=143  Identities=14%  Similarity=0.212  Sum_probs=87.1

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT   77 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~   77 (162)
                      |+|+|++. ..+.+++.||+|++......   +.++.+|||||+......  ..+.+......++   ..+|++++|+|+
T Consensus        19 L~n~l~~~-~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~--~~~~~~~~~~~~~---~~ad~il~vvD~   92 (436)
T 2hjg_A           19 IFNRIAGE-RISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEP--FLAQIRQQAEIAM---DEADVIIFMVNG   92 (436)
T ss_dssp             HHHHHEEE-ECC-----------CEEEECTTCSSCCEEEC---------C--HHHHHHHHHHHHH---HHCSEEEEEEET
T ss_pred             HHHHHhCC-CceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchh--HHHHHHHHHHHHH---HhCCEEEEEEeC
Confidence            58999998 56789999999999887655   557999999998432111  2222333333333   456999999999


Q ss_pred             CCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293           78 KWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  157 (162)
Q Consensus        78 ~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~  157 (162)
                      +.+.+..+.++...+...++|+++|+||+|+.....      ...+.. ..+  ..+++++||.+|.|++++++++.+.+
T Consensus        93 ~~~~~~~d~~~~~~l~~~~~pvilv~NK~D~~~~~~------~~~~~~-~lg--~~~~~~iSA~~g~gv~~L~~~i~~~l  163 (436)
T 2hjg_A           93 REGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMRA------NIYDFY-SLG--FGEPYPISGTHGLGLGDLLDAVAEHF  163 (436)
T ss_dssp             TTCSCHHHHHHHHHHTTCCSCEEEEEECCCC-----------CCCSSG-GGS--SCCCEECBTTTTBTHHHHHHHHHHTG
T ss_pred             CCCCCHHHHHHHHHHHHcCCCEEEEEECccCccchh------hHHHHH-HcC--CCCeEEEeCcCCCChHHHHHHHHHhc
Confidence            999888888888888878899999999999864321      111111 112  23789999999999999999998876


Q ss_pred             h
Q 031293          158 R  158 (162)
Q Consensus       158 ~  158 (162)
                      +
T Consensus       164 ~  164 (436)
T 2hjg_A          164 K  164 (436)
T ss_dssp             G
T ss_pred             C
Confidence            4

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.76  E-value=1.9e-18  Score=130.74  Aligned_cols=141  Identities=21%  Similarity=0.184  Sum_probs=75.8

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEE--Ee-CCceEEEcCCCCcccccCHHHHHHHHHH-HHHHHhcCcccceeEEEee
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFF--KL-GTKLCLVDLPGYGFAYAKEEVKDAWEEL-VKEYVSTRVSLKRVCLLID   76 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~--~~-~~~~~ivDtpG~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~vi~vid   76 (162)
                      |+|+|++. ..+.+++.||+|++....  .. +..+.+|||||+....      ..++.+ ++........+|++++|+|
T Consensus       249 Lln~L~~~-~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~------~~ve~~gi~~~~~~~~~aD~vl~VvD  321 (476)
T 3gee_A          249 LLNTLLGQ-ERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAG------EEIEHEGIRRSRMKMAEADLILYLLD  321 (476)
T ss_dssp             HHHHCC-------------------CEEEEETTEEEEEEC--------------------------CCCSSCSEEEEEEE
T ss_pred             HHHHHhCC-CCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcch------hHHHHHHHHHHHhhcccCCEEEEEEE
Confidence            58999998 567899999999987543  33 4569999999994321      111111 3445556678899999999


Q ss_pred             cCCCCCc----cHHHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHH
Q 031293           77 TKWGVKP----RDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTV  152 (162)
Q Consensus        77 ~~~~~~~----~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~  152 (162)
                      +..+.+.    ....++..+.  ++|+++|+||+|+.+......  +.+.+.    +  ..+++++||++|.|+++++++
T Consensus       322 ~s~~~s~~~~~~~~~~l~~l~--~~piIvV~NK~Dl~~~~~~~~--~~l~~~----~--~~~~i~vSAktg~GI~eL~~~  391 (476)
T 3gee_A          322 LGTERLDDELTEIRELKAAHP--AAKFLTVANKLDRAANADALI--RAIADG----T--GTEVIGISALNGDGIDTLKQH  391 (476)
T ss_dssp             TTTCSSGGGHHHHHHHHHHCT--TSEEEEEEECTTSCTTTHHHH--HHHHHH----H--TSCEEECBTTTTBSHHHHHHH
T ss_pred             CCCCcchhhhHHHHHHHHhcC--CCCEEEEEECcCCCCccchhH--HHHHhc----C--CCceEEEEECCCCCHHHHHHH
Confidence            9887665    2333333332  689999999999986554321  222221    1  158999999999999999999


Q ss_pred             HHHhhh
Q 031293          153 LSKIAR  158 (162)
Q Consensus       153 i~~~~~  158 (162)
                      |.+.+.
T Consensus       392 i~~~~~  397 (476)
T 3gee_A          392 MGDLVK  397 (476)
T ss_dssp             HTHHHH
T ss_pred             HHHHHh
Confidence            988764

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.76  E-value=1.3e-18  Score=113.48  Aligned_cols=141  Identities=16%  Similarity=0.160  Sum_probs=88.9

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT   77 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~   77 (162)
                      |+|+|.+. ....++..+++|.+......   +.++.++||||+.....   ..   ..+..........+|++++++|+
T Consensus        17 li~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~---~~---~~~~~~~~~~~~~~~~~i~v~d~   89 (161)
T 2dyk_A           17 LFNRLLKK-RSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDK---WE---KKIQEKVDRALEDAEVVLFAVDG   89 (161)
T ss_dssp             HHHHHHHC-CC-----------CCEEEEEEETTEEEEEEECGGGCSSSS---CC---HHHHHHHHHHTTTCSEEEEEEES
T ss_pred             HHHHHhCC-CeeeccCCCCceecceEEEEEeCCceEEEEECCCCCCccc---hH---HHHHHHHHHHHHhCCEEEEEEEC
Confidence            46788877 34556778888876554433   44699999999854211   00   11222222334556999999999


Q ss_pred             CCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293           78 KWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  157 (162)
Q Consensus        78 ~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~  157 (162)
                      ..+.+....++..++...++|+++|+||+|+.+..      +...+.. ..+  ..+++++||++|.|++++++++.+.+
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~------~~~~~~~-~~~--~~~~~~~Sa~~~~gv~~l~~~l~~~l  160 (161)
T 2dyk_A           90 RAELTQADYEVAEYLRRKGKPVILVATKVDDPKHE------LYLGPLY-GLG--FGDPIPTSSEHARGLEELLEAIWERL  160 (161)
T ss_dssp             SSCCCHHHHHHHHHHHHHTCCEEEEEECCCSGGGG------GGCGGGG-GGS--SCSCEECBTTTTBSHHHHHHHHHHHC
T ss_pred             CCcccHhHHHHHHHHHhcCCCEEEEEECcccccch------HhHHHHH-hCC--CCCeEEEecccCCChHHHHHHHHHhC
Confidence            98877777677777777889999999999997542      1122222 222  23799999999999999999998765

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.76  E-value=3e-18  Score=120.57  Aligned_cols=143  Identities=21%  Similarity=0.258  Sum_probs=96.4

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT   77 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~   77 (162)
                      |+|+|++.  ...++..||+|.+.....+   +.++.++||||+........ .   +.+...++.. ..+|++++|+|+
T Consensus        21 L~n~l~g~--~~~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~-~---e~v~~~~~~~-~~~d~ii~V~D~   93 (258)
T 3a1s_A           21 LFNALTGT--KQYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSI-D---EKIARDYLLK-GDADLVILVADS   93 (258)
T ss_dssp             HHHHHHTT--CEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSH-H---HHHHHHHHHH-SCCSEEEEEEET
T ss_pred             HHHHHHCC--CCcccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCH-H---HHHHHHHHhh-cCCCEEEEEeCC
Confidence            58999998  3458899999987665433   44699999999854422111 1   2233444433 456999999999


Q ss_pred             CCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293           78 KWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  157 (162)
Q Consensus        78 ~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~  157 (162)
                      ...  .....+...+.+.++|+++|+||+|+..........+.+.+.   .+   .+++++||++|.|++++++++.+.+
T Consensus        94 t~~--~~~~~~~~~l~~~~~pvilv~NK~Dl~~~~~i~~~~~~l~~~---lg---~~vi~~SA~~g~gi~el~~~i~~~~  165 (258)
T 3a1s_A           94 VNP--EQSLYLLLEILEMEKKVILAMTAIDEAKKTGMKIDRYELQKH---LG---IPVVFTSSVTGEGLEELKEKIVEYA  165 (258)
T ss_dssp             TSC--HHHHHHHHHHHTTTCCEEEEEECHHHHHHTTCCBCHHHHHHH---HC---SCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             Cch--hhHHHHHHHHHhcCCCEEEEEECcCCCCccchHHHHHHHHHH---cC---CCEEEEEeeCCcCHHHHHHHHHHHh
Confidence            863  223345556666789999999999985322211111223222   22   4999999999999999999998865


Q ss_pred             h
Q 031293          158 R  158 (162)
Q Consensus       158 ~  158 (162)
                      +
T Consensus       166 ~  166 (258)
T 3a1s_A          166 Q  166 (258)
T ss_dssp             H
T ss_pred             h
Confidence            4

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.75  E-value=6.5e-17  Score=110.05  Aligned_cols=157  Identities=34%  Similarity=0.454  Sum_probs=100.3

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEeCCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCC
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG   80 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~   80 (162)
                      |+|+|++....+.+++.+|+|.....+..+..+.++||||++....+....+.+...+..++.....++.++++.|+..+
T Consensus        42 Ll~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~  121 (210)
T 1pui_A           42 ALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHP  121 (210)
T ss_dssp             HHTTTCCC-------------CCEEEEEEETTEEEEECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSC
T ss_pred             HHHHHhCCCccccccCCCccceeeEEEEecCCEEEEECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCC
Confidence            57889888435667889999987776666557999999998653222222334455566666666677999999999877


Q ss_pred             CCccHHHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293           81 VKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR  158 (162)
Q Consensus        81 ~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~  158 (162)
                      ....+.++..++...++|++++.||+|+.+..+.+...+.++..+.... ....++++||+++.|+++++++|.+.+.
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~-~~~~~~~~Sal~~~~~~~l~~~l~~~~~  198 (210)
T 1pui_A          122 LKDLDQQMIEWAVDSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFN-GDVQVETFSSLKKQGVDKLRQKLDTWFS  198 (210)
T ss_dssp             CCHHHHHHHHHHHHTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGC-SCEEEEECBTTTTBSHHHHHHHHHHHHC
T ss_pred             CchhHHHHHHHHHHcCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcC-CCCceEEEeecCCCCHHHHHHHHHHHHh
Confidence            6555555666777778999999999999875543332344555554332 1347889999999999999999987654

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=99.74  E-value=5.9e-18  Score=128.64  Aligned_cols=122  Identities=16%  Similarity=0.169  Sum_probs=86.8

Q ss_pred             ccCCCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCC-------CCc
Q 031293           14 TSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG-------VKP   83 (162)
Q Consensus        14 ~~~~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~-------~~~   83 (162)
                      .+..+|+|.+.....+   +.++.++||||+             +.+...+....+.+|++++|+|++.+       +..
T Consensus        91 ~e~~~GiTi~~~~~~~~~~~~~~~iiDTPG~-------------~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~  157 (483)
T 3p26_A           91 EERERGVTVSICTSHFSTHRANFTIVDAPGH-------------RDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDG  157 (483)
T ss_dssp             ----CCSSCCCCEEEEECSSCEEEEECCCCC-------------GGGHHHHHHHHTTCSEEEEEEECCC------CCCCH
T ss_pred             hHhhcCcceEeeeEEEecCCceEEEEECCCc-------------HHHHHHHHHhhhhCCEEEEEEECCCCccccccchhh
Confidence            4556788887766544   557999999999             55666666777788999999999876       445


Q ss_pred             cHHHHHHHHHHhCC-ceEEEEeccCCCC--cHHHHHHHHHHHHHHHhcCCC--CCCeEEeecCCCCCHHH
Q 031293           84 RDHELISLMERSQT-KYQVVLTKTDTVF--PIDVARRAMQIEESLKANNSL--VQPVMMVSSKSGAGIRS  148 (162)
Q Consensus        84 ~~~~~~~~l~~~~~-~~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~--~~~i~~~Sa~~~~g~~~  148 (162)
                      +..+++..+...++ |+++|+||+|+.+  +...++..+.+.+.+...+..  ..+++++||++|.|+++
T Consensus       158 qt~e~~~~~~~~~~~~iIvviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e  227 (483)
T 3p26_A          158 QTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK  227 (483)
T ss_dssp             HHHHHHHHHHHTTCCCEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred             hHHHHHHHHHHcCCCcEEEEEECcCcccchHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence            66677777777775 5999999999986  333445555565555443321  35899999999999974

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=99.74  E-value=4.4e-18  Score=122.16  Aligned_cols=145  Identities=19%  Similarity=0.238  Sum_probs=100.2

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEE--EEe-CCceEEEcCCCCcccccCHHHHHHHH-HHHHHHHhcCcccceeEEEee
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINF--FKL-GTKLCLVDLPGYGFAYAKEEVKDAWE-ELVKEYVSTRVSLKRVCLLID   76 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~--~~~-~~~~~ivDtpG~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~vi~vid   76 (162)
                      |+|+|++. ..+.++..|++|+....  +.. +.++.++||||+..     ....... .+..........+|++++|+|
T Consensus        24 Lln~L~g~-~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~-----~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd   97 (301)
T 1ega_A           24 LLNKLLGQ-KISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHM-----EEKRAINRLMNKAASSSIGDVELVIFVVE   97 (301)
T ss_dssp             HHHHHHTC-SEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCH-----HHHHHHHHHHTCCTTSCCCCEEEEEEEEE
T ss_pred             HHHHHHCC-CccccCCCCCcceeeEEEEEEECCeeEEEEECcCCCc-----cchhhHHHHHHHHHHHHHhcCCEEEEEEe
Confidence            58999998 57788999999875433  333 44689999999931     0001111 122223345567899999999


Q ss_pred             cCCCCCccHHHHHHHHHHhCCceEEEEeccCCCC-cHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHH
Q 031293           77 TKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF-PIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSK  155 (162)
Q Consensus        77 ~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~  155 (162)
                      +.. ++..+.++++.+...+.|.++++||+|+.. ......   .+.+.....+  ..+++++||++|.|++++++.+.+
T Consensus        98 ~~~-~~~~~~~i~~~l~~~~~P~ilvlNK~D~~~~~~~~~~---~l~~l~~~~~--~~~~i~iSA~~g~~v~~l~~~i~~  171 (301)
T 1ega_A           98 GTR-WTPDDEMVLNKLREGKAPVILAVNKVDNVQEKADLLP---HLQFLASQMN--FLDIVPISAETGLNVDTIAAIVRK  171 (301)
T ss_dssp             TTC-CCHHHHHHHHHHHSSSSCEEEEEESTTTCCCHHHHHH---HHHHHHTTSC--CSEEEECCTTTTTTHHHHHHHHHT
T ss_pred             CCC-CCHHHHHHHHHHHhcCCCEEEEEECcccCccHHHHHH---HHHHHHHhcC--cCceEEEECCCCCCHHHHHHHHHH
Confidence            987 777777777777767899999999999986 333322   2222222222  236899999999999999999987


Q ss_pred             hh
Q 031293          156 IA  157 (162)
Q Consensus       156 ~~  157 (162)
                      .+
T Consensus       172 ~l  173 (301)
T 1ega_A          172 HL  173 (301)
T ss_dssp             TC
T ss_pred             hC
Confidence            54

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=99.74  E-value=5.3e-17  Score=120.65  Aligned_cols=129  Identities=19%  Similarity=0.242  Sum_probs=99.9

Q ss_pred             CCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHH
Q 031293           17 KPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLME   93 (162)
Q Consensus        17 ~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~   93 (162)
                      .+|.|.+..+..+   +.++.++|||||             .++...+..+.+.+|++++|+|+.++...++.+++..+.
T Consensus        49 ~~giTi~~~~~~~~~~~~~~~iiDtpG~-------------~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~  115 (397)
T 1d2e_A           49 ARGITINAAHVEYSTAARHYAHTDCPGH-------------ADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLAR  115 (397)
T ss_dssp             ETTEEEECEEEEEECSSCEEEEEECSSH-------------HHHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHH
T ss_pred             hcCcEEEeeeEEeccCCeEEEEEECCCh-------------HHHHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHH
Confidence            5777877665444   467999999999             777778888888999999999999988888888888888


Q ss_pred             HhCCc-eEEEEeccCCCC-cHHHHHHHHHHHHHHHhcCC--CCCCeEEeecCCCCC----------HHHHHHHHHHhhh
Q 031293           94 RSQTK-YQVVLTKTDTVF-PIDVARRAMQIEESLKANNS--LVQPVMMVSSKSGAG----------IRSLRTVLSKIAR  158 (162)
Q Consensus        94 ~~~~~-~ivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~--~~~~i~~~Sa~~~~g----------~~~l~~~i~~~~~  158 (162)
                      ..++| +++++||+|+.+ +...+...+.+++.+...+.  ...+++++||++|.|          +++|+++|.+.++
T Consensus       116 ~~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p  194 (397)
T 1d2e_A          116 QIGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP  194 (397)
T ss_dssp             HTTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred             HcCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCC
Confidence            78999 689999999985 33334444556666665542  236999999999764          8899999987553

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.73  E-value=3.7e-17  Score=112.88  Aligned_cols=151  Identities=12%  Similarity=0.092  Sum_probs=90.2

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT   77 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~   77 (162)
                      |+|+|++. ... ++..+++|++......   +.++.+|||||+............+ ..+..+   ...+|++++|+|+
T Consensus        45 Lin~l~~~-~~~-~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~-~~~~~~---~~~~d~~i~v~d~  118 (228)
T 2qu8_A           45 FMNIVSRA-NVD-VQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEM-TTITAL---AHINGVILFIIDI  118 (228)
T ss_dssp             HHHHHTTT-CEE-EECC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHH-HHHHHH---HTSSEEEEEEEET
T ss_pred             HHHHHhCC-CCc-cCCCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHH-HHHHHh---hccccEEEEEEec
Confidence            57888888 333 6778888887765433   3469999999995432111100001 112233   2345899999999


Q ss_pred             CCCCCcc---HHHHHHHHHHh--CCceEEEEeccCCCCcHHHH-HHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHH
Q 031293           78 KWGVKPR---DHELISLMERS--QTKYQVVLTKTDTVFPIDVA-RRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRT  151 (162)
Q Consensus        78 ~~~~~~~---~~~~~~~l~~~--~~~~ivv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~  151 (162)
                      ..+.+-.   ...++..+...  ++|+++|+||+|+.+..... ...+...+.....+ ...+++++||++|.|++++++
T Consensus       119 ~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~SA~~g~gi~~l~~  197 (228)
T 2qu8_A          119 SEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVK-NPIKFSSFSTLTGVGVEQAKI  197 (228)
T ss_dssp             TCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCC-SCEEEEECCTTTCTTHHHHHH
T ss_pred             ccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcC-CCceEEEEecccCCCHHHHHH
Confidence            8754322   23445555554  78999999999998543322 11123333334332 124899999999999999999


Q ss_pred             HHHHhhh
Q 031293          152 VLSKIAR  158 (162)
Q Consensus       152 ~i~~~~~  158 (162)
                      +|.+.+.
T Consensus       198 ~l~~~i~  204 (228)
T 2qu8_A          198 TACELLK  204 (228)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9987664

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.73  E-value=1.9e-17  Score=124.51  Aligned_cols=153  Identities=21%  Similarity=0.242  Sum_probs=96.0

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEE--EEe-CCceEEEcCCCCcccccCH-HHHHHHHHHHHHHHhcCcccceeEEEee
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINF--FKL-GTKLCLVDLPGYGFAYAKE-EVKDAWEELVKEYVSTRVSLKRVCLLID   76 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~--~~~-~~~~~ivDtpG~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~vi~vid   76 (162)
                      |+|+|++. ..+.+++.||+|++...  ..+ +..+.++||||+....... ...+.+..  .......+.+|++++++|
T Consensus       196 Lln~l~g~-~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~--~~~~~~i~~ad~vllv~d  272 (439)
T 1mky_A          196 LFNAILNK-ERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSN--YRVVDSIEKADVVVIVLD  272 (439)
T ss_dssp             HHHHHHTS-TTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCC--HHHHHHHHHCSEEEEEEE
T ss_pred             HHHHHhCC-cccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHH--HHHHHHHhhCCEEEEEEe
Confidence            58999998 56789999999987543  333 4568999999983321000 00000000  011122234599999999


Q ss_pred             cCCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcHH--HHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHH
Q 031293           77 TKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPID--VARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLS  154 (162)
Q Consensus        77 ~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~  154 (162)
                      +..+.+..+..+...+...++|+++|+||+|+.+...  ..+..+.+.+.+...  ...+++++||++|.|++++++.+.
T Consensus       273 ~~~~~~~~~~~i~~~l~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~SA~~g~gv~~l~~~i~  350 (439)
T 1mky_A          273 ATQGITRQDQRMAGLMERRGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFI--DYSPLIFTSADKGWNIDRMIDAMN  350 (439)
T ss_dssp             TTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGG--TTSCEEECBTTTTBSHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccC--CCCcEEEEECCCCCCHHHHHHHHH
Confidence            9988777777777777778999999999999985432  222223333333222  236899999999999999999998


Q ss_pred             Hhhh
Q 031293          155 KIAR  158 (162)
Q Consensus       155 ~~~~  158 (162)
                      +.++
T Consensus       351 ~~~~  354 (439)
T 1mky_A          351 LAYA  354 (439)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7654

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.73  E-value=4.5e-18  Score=128.47  Aligned_cols=143  Identities=15%  Similarity=0.214  Sum_probs=88.9

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT   77 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~   77 (162)
                      |+|+|++. ..+.+++.||+|++......   +..+.+|||||+...  ....++.+......++   ..+|++++|+|+
T Consensus        39 L~n~l~~~-~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~--~~~~~~~~~~~~~~~~---~~ad~il~VvD~  112 (456)
T 4dcu_A           39 IFNRIAGE-RISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIG--DEPFLAQIRQQAEIAM---DEADVIIFMVNG  112 (456)
T ss_dssp             HHHHHEEE-EEC-----------CEEEECTTCSSCCEEECCCC--------CCHHHHHHHHHHHH---HHCSEEEEEEES
T ss_pred             HHHHHhCC-CCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCc--chHHHHHHHHHHHhhH---hhCCEEEEEEeC
Confidence            58999998 56789999999998887655   557999999998532  1112333333344443   346999999999


Q ss_pred             CCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293           78 KWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  157 (162)
Q Consensus        78 ~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~  157 (162)
                      +.+++..+.++.+++...++|+++|+||+|+.+...      ...+... .  ....++++||.+|.|+.++++++.+.+
T Consensus       113 ~~~~~~~d~~l~~~l~~~~~pvilV~NK~D~~~~~~------~~~e~~~-l--g~~~~~~iSA~~g~gv~~L~~~i~~~l  183 (456)
T 4dcu_A          113 REGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMRA------NIYDFYS-L--GFGEPYPISGTHGLGLGDLLDAVAEHF  183 (456)
T ss_dssp             SSCSCHHHHHHHHHHTTCCSCEEEEEECC---------------CCSGG-G--SSSSEEECCTTTCTTHHHHHHHHHTTG
T ss_pred             CCCCChHHHHHHHHHHHcCCCEEEEEECccchhhhh------hHHHHHH-c--CCCceEEeecccccchHHHHHHHHhhc
Confidence            999999898888999888999999999999863221      1111111 1  223678999999999999999998765


Q ss_pred             h
Q 031293          158 R  158 (162)
Q Consensus       158 ~  158 (162)
                      .
T Consensus       184 ~  184 (456)
T 4dcu_A          184 K  184 (456)
T ss_dssp             G
T ss_pred             c
Confidence            3

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=99.73  E-value=8.3e-18  Score=119.07  Aligned_cols=142  Identities=15%  Similarity=0.181  Sum_probs=95.4

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEe--CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecC
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTK   78 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~--~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~   78 (162)
                      |+|+|++.  ...+++.||+|.+.....+  +.++.+|||||+....... ..   +.+...|+.. ..+|++++|+|+.
T Consensus        19 L~n~L~g~--~~~v~~~pg~tv~~~~~~~~~~~~l~l~DtpG~~~~~~~~-~~---e~v~~~~~~~-~~~d~vi~V~D~t   91 (272)
T 3b1v_A           19 LFNLITGH--NQRVGNWPGVTVERKSGLVKKNKDLEIQDLPGIYSMSPYS-PE---AKVARDYLLS-QRADSILNVVDAT   91 (272)
T ss_dssp             HHHHHHCC--CCCCCSSSCCCCSCEEEECTTCTTEEEEECCCCSCSSCSS-HH---HHHHHHHHHT-TCCSEEEEEEEGG
T ss_pred             HHHHHHCC--CCcccCCCCCcEEEEEEEEecCCeEEEEECCCcCccCCCC-hH---HHHHHHHHhc-CCCCEEEEEecCC
Confidence            58999988  3568999999986554333  4579999999985432111 11   2344555543 3579999999997


Q ss_pred             CCCCccHHHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293           79 WGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  157 (162)
Q Consensus        79 ~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~  157 (162)
                      ..  .....+...+.+.++|+++|+||+|+..........+.+.+.+   +   .+++++||++|.|+++++.++.+.+
T Consensus        92 ~~--e~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~l---g---~~vi~~SA~~g~gi~el~~~i~~~~  162 (272)
T 3b1v_A           92 NL--ERNLYLTTQLIETGIPVTIALNMIDVLDGQGKKINVDKLSYHL---G---VPVVATSALKQTGVDQVVKKAAHTT  162 (272)
T ss_dssp             GH--HHHHHHHHHHHHTCSCEEEEEECHHHHHHTTCCCCHHHHHHHH---T---SCEEECBTTTTBSHHHHHHHHHHSC
T ss_pred             ch--HhHHHHHHHHHhcCCCEEEEEEChhhCCcCCcHHHHHHHHHHc---C---CCEEEEEccCCCCHHHHHHHHHHHH
Confidence            52  2233344556667899999999999753221111112233322   2   4899999999999999999998765

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=99.72  E-value=2.9e-17  Score=122.37  Aligned_cols=128  Identities=19%  Similarity=0.215  Sum_probs=95.9

Q ss_pred             CCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHH
Q 031293           17 KPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLME   93 (162)
Q Consensus        17 ~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~   93 (162)
                      .+|+|.+.....+   +.++.++|||||             .++...+....+.+|++++|+|+.++...+..+++..+.
T Consensus        58 ~~GiTi~~~~~~~~~~~~~~~iiDtpG~-------------~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~  124 (405)
T 2c78_A           58 ARGITINTAHVEYETAKRHYSHVDCPGH-------------ADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLAR  124 (405)
T ss_dssp             HHTCCCSCEEEEEECSSCEEEEEECCCS-------------GGGHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHH
T ss_pred             HcCCCEEeeeeEeccCCeEEEEEECCCh-------------HHHHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHH
Confidence            4677766554333   467999999999             455666666677889999999999888888888888888


Q ss_pred             HhCCc-eEEEEeccCCCCc-HHHHHHHHHHHHHHHhcCC--CCCCeEEeecCCCCC------------------HHHHHH
Q 031293           94 RSQTK-YQVVLTKTDTVFP-IDVARRAMQIEESLKANNS--LVQPVMMVSSKSGAG------------------IRSLRT  151 (162)
Q Consensus        94 ~~~~~-~ivv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~--~~~~i~~~Sa~~~~g------------------~~~l~~  151 (162)
                      ..++| +++|+||+|+.+. ...+...+.+++.+...+.  ...+++++||++|.|                  +++|++
T Consensus       125 ~~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~  204 (405)
T 2c78_A          125 QVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLD  204 (405)
T ss_dssp             HTTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHH
T ss_pred             HcCCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhcccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHH
Confidence            88999 8899999999843 3334444456666655442  236899999999987                  788888


Q ss_pred             HHHHhh
Q 031293          152 VLSKIA  157 (162)
Q Consensus       152 ~i~~~~  157 (162)
                      +|.+.+
T Consensus       205 ~l~~~l  210 (405)
T 2c78_A          205 AIDEYI  210 (405)
T ss_dssp             HHHHHS
T ss_pred             HHHhhc
Confidence            887754

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.72  E-value=6.6e-19  Score=116.79  Aligned_cols=143  Identities=19%  Similarity=0.209  Sum_probs=91.8

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEE--EEe-CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINF--FKL-GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT   77 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~--~~~-~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~   77 (162)
                      |+|+|++..  ...+..|++|.+...  ... +.++.++||||+....             .........+|++++|+|+
T Consensus        24 l~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------------~~~~~~~~~~d~~i~v~d~   88 (178)
T 2lkc_A           24 LLDAIRHSK--VTEQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFT-------------TMRARGAQVTDIVILVVAA   88 (178)
T ss_dssp             HHHHHHTTC--SSCSSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSS-------------CSCCSSCCCCCEEEEEEET
T ss_pred             HHHHHhCCc--cccCCCCceeEeeeEEEEEeCCceEEEEECCCCHHHH-------------HHHHHHHhhCCEEEEEEEC
Confidence            467777762  233445666554433  223 4568999999983321             1112334567999999999


Q ss_pred             CCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCC---CCCCeEEeecCCCCCHHHHHHHHH
Q 031293           78 KWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNS---LVQPVMMVSSKSGAGIRSLRTVLS  154 (162)
Q Consensus        78 ~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~---~~~~i~~~Sa~~~~g~~~l~~~i~  154 (162)
                      ..+......+.+..+...++|+++|+||+|+.+... .+..+.+.. ......   ...+++++||++|.|+++++++|.
T Consensus        89 ~~~~~~~~~~~l~~~~~~~~p~ilv~nK~Dl~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~  166 (178)
T 2lkc_A           89 DDGVMPQTVEAINHAKAANVPIIVAINKMDKPEANP-DRVMQELME-YNLVPEEWGGDTIFCKLSAKTKEGLDHLLEMIL  166 (178)
T ss_dssp             TCCCCHHHHHHHHHHGGGSCCEEEEEETTTSSCSCH-HHHHHHHTT-TTCCBTTTTSSEEEEECCSSSSHHHHHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHhCCCCEEEEEECccCCcCCH-HHHHHHHHh-cCcChhHcCCcccEEEEecCCCCCHHHHHHHHH
Confidence            887666666666666667899999999999985321 111111111 111100   114799999999999999999999


Q ss_pred             Hhhhhh
Q 031293          155 KIARFA  160 (162)
Q Consensus       155 ~~~~~~  160 (162)
                      +.++..
T Consensus       167 ~~~~~~  172 (178)
T 2lkc_A          167 LVSEME  172 (178)
T ss_dssp             HHHHHT
T ss_pred             Hhhhhh
Confidence            877643

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.71  E-value=3.7e-17  Score=122.78  Aligned_cols=118  Identities=14%  Similarity=0.191  Sum_probs=85.5

Q ss_pred             CCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHH
Q 031293           18 PGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMER   94 (162)
Q Consensus        18 ~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~   94 (162)
                      +|.|.+..+..+   +.++.++|||||             +.+...+......+|++++|+|+.++...+..+++..+..
T Consensus        88 rGiTi~~~~~~~~~~~~~~~iiDtpGh-------------~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~  154 (434)
T 1zun_B           88 QGITIDVAYRYFSTAKRKFIIADTPGH-------------EQYTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASL  154 (434)
T ss_dssp             --CCCCCEEEEEECSSEEEEEEECCCS-------------GGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHH
T ss_pred             CCcEEEeeeeEeecCCceEEEEECCCh-------------HHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHH
Confidence            455655554333   446999999999             4444555555677899999999999887778788777777


Q ss_pred             hCCc-eEEEEeccCCCC--cHHHHHHHHHHHHHHHhcC--CCCCCeEEeecCCCCCHHH
Q 031293           95 SQTK-YQVVLTKTDTVF--PIDVARRAMQIEESLKANN--SLVQPVMMVSSKSGAGIRS  148 (162)
Q Consensus        95 ~~~~-~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~--~~~~~i~~~Sa~~~~g~~~  148 (162)
                      .++| +++|+||+|+.+  +.......+.+++.+...+  ....+++++||++|.|+++
T Consensus       155 ~~~~~iIvviNK~Dl~~~~~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~  213 (434)
T 1zun_B          155 LGIKHIVVAINKMDLNGFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVN  213 (434)
T ss_dssp             TTCCEEEEEEECTTTTTSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSS
T ss_pred             cCCCeEEEEEEcCcCCcccHHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCccc
Confidence            7765 899999999986  2334445566666666554  2335899999999999987

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=99.71  E-value=4.8e-17  Score=123.21  Aligned_cols=141  Identities=20%  Similarity=0.280  Sum_probs=95.4

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEE--Ee-CCceEEEcCCCCc-ccccCHHHHHHHHHHHHHHHhcCcccceeEEEee
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFF--KL-GTKLCLVDLPGYG-FAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLID   76 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~--~~-~~~~~ivDtpG~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid   76 (162)
                      |+|+|++. ..+.+++.||+|++....  .+ +..+.++||||+. .......   .+  .+.........+|++++|+|
T Consensus       259 Lln~L~~~-~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve---~~--gi~~~~~~~~~aD~vl~VvD  332 (482)
T 1xzp_A          259 LLNRLLNE-DRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVE---RL--GIERTLQEIEKADIVLFVLD  332 (482)
T ss_dssp             HHHHHHHH-TBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCC---CC--CHHHHHHHHHHCSEEEEEEE
T ss_pred             HHHHHHCC-CCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHH---HH--HHHHHHHHhhcccEEEEEec
Confidence            58999988 567899999999976543  33 4569999999986 3311000   00  01111122234599999999


Q ss_pred             cCCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHh
Q 031293           77 TKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKI  156 (162)
Q Consensus        77 ~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~  156 (162)
                      +..+.+..+.++++.+  .++|+++|+||+|+.+....    +.+.+.+.    ...+++++||++|.|+++++++|.+.
T Consensus       333 ~s~~~s~~~~~il~~l--~~~piivV~NK~DL~~~~~~----~~~~~~~~----~~~~~i~iSAktg~Gi~eL~~~l~~~  402 (482)
T 1xzp_A          333 ASSPLDEEDRKILERI--KNKRYLVVINKVDVVEKINE----EEIKNKLG----TDRHMVKISALKGEGLEKLEESIYRE  402 (482)
T ss_dssp             TTSCCCHHHHHHHHHH--TTSSEEEEEEECSSCCCCCH----HHHHHHHT----CSTTEEEEEGGGTCCHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHh--cCCCEEEEEECcccccccCH----HHHHHHhc----CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            9887666565565554  37899999999999753211    12222222    12589999999999999999999875


Q ss_pred             h
Q 031293          157 A  157 (162)
Q Consensus       157 ~  157 (162)
                      +
T Consensus       403 ~  403 (482)
T 1xzp_A          403 T  403 (482)
T ss_dssp             T
T ss_pred             H
Confidence            4

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=99.71  E-value=5.8e-18  Score=126.26  Aligned_cols=140  Identities=21%  Similarity=0.214  Sum_probs=88.7

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEe---CC-ceEEEcCCCCccccc-CHHHHHHHHHHHHHHHhcCcccceeEEEe
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKL---GT-KLCLVDLPGYGFAYA-KEEVKDAWEELVKEYVSTRVSLKRVCLLI   75 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~---~~-~~~ivDtpG~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~vi~vi   75 (162)
                      |+|+|++. ..+.++..+|+|.+......   +. ++.+|||||+.+... ....       ..........+|++++|+
T Consensus        50 Lin~L~~~-~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~-------~~~~~~~l~~aD~vllVv  121 (423)
T 3qq5_A           50 FMNALVGQ-NVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLR-------VEKARRVFYRADCGILVT  121 (423)
T ss_dssp             TTTSSCC--------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCC-------HHHHHHHHTSCSEEEEEC
T ss_pred             HHHHHHcC-CCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHH-------HHHHHHHHhcCCEEEEEE
Confidence            68999998 56778899999987765443   22 699999999965321 1000       111222233569999999


Q ss_pred             ecCCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHH
Q 031293           76 DTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSK  155 (162)
Q Consensus        76 d~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~  155 (162)
                      |+  +.......++..+.+.++|+++|+||+|+.+.... +   ..++.....   ..+++++||++|.|+++++++|.+
T Consensus       122 D~--~~~~~~~~~l~~l~~~~~piIvV~NK~Dl~~~~~~-~---~~~~l~~~~---g~~v~~vSAktg~gI~eL~~~L~~  192 (423)
T 3qq5_A          122 DS--APTPYEDDVVNLFKEMEIPFVVVVNKIDVLGEKAE-E---LKGLYESRY---EAKVLLVSALQKKGFDDIGKTISE  192 (423)
T ss_dssp             SS--SCCHHHHHHHHHHHHTTCCEEEECCCCTTTTCCCT-H---HHHHSSCCT---TCCCCCCSSCCTTSTTTHHHHHHH
T ss_pred             eC--CChHHHHHHHHHHHhcCCCEEEEEeCcCCCCccHH-H---HHHHHHHHc---CCCEEEEECCCCCCHHHHHHHHHH
Confidence            99  55666777888888889999999999999865432 1   111111122   258999999999999999999998


Q ss_pred             hh
Q 031293          156 IA  157 (162)
Q Consensus       156 ~~  157 (162)
                      .+
T Consensus       193 ~l  194 (423)
T 3qq5_A          193 IL  194 (423)
T ss_dssp             HS
T ss_pred             hh
Confidence            76

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.71  E-value=2e-17  Score=117.16  Aligned_cols=143  Identities=20%  Similarity=0.247  Sum_probs=95.8

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT   77 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~   77 (162)
                      |+|+|++.  ...++..||+|.+......   +..+.++||||+.........    +.....++. ...+|++++|+|+
T Consensus        19 L~n~l~g~--~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~----~~~~~~~~~-~~~~d~vi~v~D~   91 (271)
T 3k53_A           19 IFNALTGL--RQHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSID----ELIARNFIL-DGNADVIVDIVDS   91 (271)
T ss_dssp             HHHHHHTT--CEEEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHH----HHHHHHHHH-TTCCSEEEEEEEG
T ss_pred             HHHHHhCC--CcccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHH----HHHHHHhhh-ccCCcEEEEEecC
Confidence            58999998  3478899999987665333   446899999998543221111    123334433 3457999999999


Q ss_pred             CCCCCccHHHHHHHHHHhC-CceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHh
Q 031293           78 KWGVKPRDHELISLMERSQ-TKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKI  156 (162)
Q Consensus        78 ~~~~~~~~~~~~~~l~~~~-~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~  156 (162)
                      ...  .....+...+...+ +|+++|+||+|+..........+.+.+.+   +   .+++++||++|.|+++++.++.+.
T Consensus        92 ~~~--~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~l---g---~~~~~~Sa~~g~gi~~l~~~i~~~  163 (271)
T 3k53_A           92 TCL--MRNLFLTLELFEMEVKNIILVLNKFDLLKKKGAKIDIKKMRKEL---G---VPVIPTNAKKGEGVEELKRMIALM  163 (271)
T ss_dssp             GGH--HHHHHHHHHHHHTTCCSEEEEEECHHHHHHHTCCCCHHHHHHHH---S---SCEEECBGGGTBTHHHHHHHHHHH
T ss_pred             Ccc--hhhHHHHHHHHhcCCCCEEEEEEChhcCcccccHHHHHHHHHHc---C---CcEEEEEeCCCCCHHHHHHHHHHH
Confidence            864  23334444555566 99999999999753222111122333333   2   489999999999999999999886


Q ss_pred             hh
Q 031293          157 AR  158 (162)
Q Consensus       157 ~~  158 (162)
                      +.
T Consensus       164 ~~  165 (271)
T 3k53_A          164 AE  165 (271)
T ss_dssp             HH
T ss_pred             Hh
Confidence            54

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.70  E-value=2.7e-17  Score=108.93  Aligned_cols=140  Identities=19%  Similarity=0.183  Sum_probs=90.9

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEE--EEe-CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINF--FKL-GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT   77 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~--~~~-~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~   77 (162)
                      |+|+|++. ..+.++..||+|++...  ... +..+.++||||+..... ...+.    .+.......+.+|++++|+|+
T Consensus        20 Ll~~l~~~-~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-~~~~~----~~~~~~~~~~~ad~~i~v~D~   93 (172)
T 2gj8_A           20 LLNALAGR-EAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASD-EVERI----GIERAWQEIEQADRVLFMVDG   93 (172)
T ss_dssp             HHHHHHTS-CCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSS-HHHHH----HHHHHHHHHHTCSEEEEEEET
T ss_pred             HHHHHhCC-CcceeeCCCCceeceeeEEEEECCeEEEEEECCCcccchh-HHHHH----HHHHHHHHHHhCCEEEEEEEC
Confidence            57889887 34567888999875533  333 34689999999854211 11000    112222223556999999999


Q ss_pred             CCCCCccHHHHHHHHHHh---CCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHH
Q 031293           78 KWGVKPRDHELISLMERS---QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLS  154 (162)
Q Consensus        78 ~~~~~~~~~~~~~~l~~~---~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~  154 (162)
                      ..+.+.....++..+...   ++|+++|+||+|+.+...         +....   ...+++++||++|.|+++++++|.
T Consensus        94 ~~~~s~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~---------~~~~~---~~~~~~~~SA~~g~gv~~l~~~l~  161 (172)
T 2gj8_A           94 TTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETL---------GMSEV---NGHALIRLSARTGEGVDVLRNHLK  161 (172)
T ss_dssp             TTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCCCC---------EEEEE---TTEEEEECCTTTCTTHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHhcccCCCEEEEEECccCCcchh---------hhhhc---cCCceEEEeCCCCCCHHHHHHHHH
Confidence            876655555555555443   589999999999853210         00011   124789999999999999999998


Q ss_pred             Hhhh
Q 031293          155 KIAR  158 (162)
Q Consensus       155 ~~~~  158 (162)
                      +.+.
T Consensus       162 ~~~~  165 (172)
T 2gj8_A          162 QSMG  165 (172)
T ss_dssp             HHC-
T ss_pred             HHhh
Confidence            8764

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=99.69  E-value=3.6e-19  Score=137.91  Aligned_cols=129  Identities=16%  Similarity=0.162  Sum_probs=77.7

Q ss_pred             CCCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCC-----C--CccH
Q 031293           16 DKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG-----V--KPRD   85 (162)
Q Consensus        16 ~~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~-----~--~~~~   85 (162)
                      ..+|+|.+..+..+   +.++.+||||||             ..+...+..+...+|++++|+|+..+     +  ..++
T Consensus       237 ~~~GiTid~~~~~~~~~~~~i~iiDTPGh-------------~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt  303 (592)
T 3mca_A          237 RARGVTMDVASTTFESDKKIYEIGDAPGH-------------RDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQT  303 (592)
T ss_dssp             ----------------------CCEEESS-------------SEEEEECCC-------CCSEEEEEECCSSTTSCSCSSH
T ss_pred             hcCCeeEEeeEEEEEeCCeEEEEEECCCh-------------HHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHH
Confidence            36788888776544   457999999999             44445555566778999999999874     3  7788


Q ss_pred             HHHHHHHHHhCCc-eEEEEeccCCCC--cHHHHHHHHHHHHHH-HhcCC--CCCCeEEeecCCCCCHH------------
Q 031293           86 HELISLMERSQTK-YQVVLTKTDTVF--PIDVARRAMQIEESL-KANNS--LVQPVMMVSSKSGAGIR------------  147 (162)
Q Consensus        86 ~~~~~~l~~~~~~-~ivv~nK~Dl~~--~~~~~~~~~~~~~~~-~~~~~--~~~~i~~~Sa~~~~g~~------------  147 (162)
                      .+++..+...++| +++|+||+|+.+  +.......+.+.+.+ ...+.  ...+++++||++|.|++            
T Consensus       304 ~e~l~~~~~lgip~iIvviNKiDl~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~  383 (592)
T 3mca_A          304 REHAYLLRALGISEIVVSVNKLDLMSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYK  383 (592)
T ss_dssp             HHHHHHHHHSSCCCEEEEEECGGGGTTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCC
T ss_pred             HHHHHHHHHcCCCeEEEEEeccccccccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccc
Confidence            8888888888887 899999999975  444555556666666 43332  12479999999999998            


Q ss_pred             --HHHHHHHHhh
Q 031293          148 --SLRTVLSKIA  157 (162)
Q Consensus       148 --~l~~~i~~~~  157 (162)
                        .|++.|....
T Consensus       384 g~~Lle~l~~~~  395 (592)
T 3mca_A          384 GPTLLSALDQLV  395 (592)
T ss_dssp             SCCHHHHHHTSC
T ss_pred             hHHHHHHHHhhc
Confidence              7888887643

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=99.69  E-value=4.9e-16  Score=126.37  Aligned_cols=130  Identities=22%  Similarity=0.245  Sum_probs=95.1

Q ss_pred             cCCCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHH
Q 031293           15 SDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISL   91 (162)
Q Consensus        15 ~~~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~   91 (162)
                      +..+|+|.+.....+   +.++.++|||||             +++...+..+...+|++++|+|+.++...++.+++..
T Consensus       340 ErerGITIdva~v~f~~~~~kI~IIDTPGH-------------edF~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~l  406 (1289)
T 3avx_A          340 EKARGITINTSHVEYDTPTRHYAHVDCPGH-------------ADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILL  406 (1289)
T ss_dssp             --------CCSCEEEECSSCEEEEEECCCH-------------HHHHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHH
T ss_pred             cccCceeEEEEEEEEcCCCEEEEEEECCCh-------------HHHHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHH
Confidence            346777766543333   467999999999             7788888888899999999999999888888888888


Q ss_pred             HHHhCCc-eEEEEeccCCCCcHH-HHHHHHHHHHHHHhcCC--CCCCeEEeecCCC--------CCHHHHHHHHHHhh
Q 031293           92 MERSQTK-YQVVLTKTDTVFPID-VARRAMQIEESLKANNS--LVQPVMMVSSKSG--------AGIRSLRTVLSKIA  157 (162)
Q Consensus        92 l~~~~~~-~ivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~--~~~~i~~~Sa~~~--------~g~~~l~~~i~~~~  157 (162)
                      +...++| +++|+||+|+.+..+ .+...+.+++.+...+.  ...+++++||++|        .|+++|+++|.+.+
T Consensus       407 l~~lgIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~I  484 (1289)
T 3avx_A          407 GRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYI  484 (1289)
T ss_dssp             HHHHTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTS
T ss_pred             HHHcCCCeEEEEEeecccccchhhHHHHHHHHHHHHHhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhc
Confidence            8888999 789999999985332 33344556666665542  2469999999999        57889999888754

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=99.69  E-value=2.7e-17  Score=108.23  Aligned_cols=140  Identities=18%  Similarity=0.174  Sum_probs=82.2

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEe-CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCC
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKL-GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW   79 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~-~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~   79 (162)
                      |+|+|++.. .....+..|.+  ...... +.++.++||||+...          ......+   .+.+|++++|+|+..
T Consensus        23 l~~~l~~~~-~~~~~~t~~~~--~~~~~~~~~~~~~~Dt~G~~~~----------~~~~~~~---~~~~d~ii~v~d~~~   86 (171)
T 1upt_A           23 ILYRLQVGE-VVTTIPTIGFN--VETVTYKNLKFQVWDLGGLTSI----------RPYWRCY---YSNTDAVIYVVDSCD   86 (171)
T ss_dssp             HHHHHHHSS-CCCCCCCSSEE--EEEEEETTEEEEEEEECCCGGG----------GGGGGGG---CTTCSEEEEEEETTC
T ss_pred             HHHHHhcCC-CCCcCCcCccc--eEEEEECCEEEEEEECCCChhh----------hHHHHHH---hccCCEEEEEEECCC
Confidence            467776652 32223333322  222223 456899999998321          2222222   346799999999986


Q ss_pred             CCCc--cHHHHHHHHHH---hCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHH
Q 031293           80 GVKP--RDHELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLS  154 (162)
Q Consensus        80 ~~~~--~~~~~~~~l~~---~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~  154 (162)
                      +.+-  ...++...+..   .++|+++|+||+|+.+.....+..+.+..  ........+++++||++|.|+++++++|.
T Consensus        87 ~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~--~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  164 (171)
T 1upt_A           87 RDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGL--PALKDRKWQIFKTSATKGTGLDEAMEWLV  164 (171)
T ss_dssp             CTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTG--GGCTTSCEEEEECCTTTCTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhCc--hhccCCceEEEECcCCCCcCHHHHHHHHH
Confidence            5322  22222233332   47899999999999865322222212110  11111224799999999999999999998


Q ss_pred             Hhhh
Q 031293          155 KIAR  158 (162)
Q Consensus       155 ~~~~  158 (162)
                      +.+.
T Consensus       165 ~~i~  168 (171)
T 1upt_A          165 ETLK  168 (171)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            8764

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.69  E-value=5.6e-17  Score=106.60  Aligned_cols=142  Identities=23%  Similarity=0.293  Sum_probs=84.4

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEE--EEe-CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINF--FKL-GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT   77 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~--~~~-~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~   77 (162)
                      |+|+|++.  ...++..||+|.+...  +.. +..+.++||||+....... ..   +.+...|++. ..++++++++|+
T Consensus        19 L~~~l~~~--~~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~-~~---~~~~~~~~~~-~~~~~~i~v~D~   91 (165)
T 2wji_A           19 IFNALTGE--NVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANS-ID---EIIARDYIIN-EKPDLVVNIVDA   91 (165)
T ss_dssp             HHHHHHCC--SSSCC-----CCCCCEEEEEETTEEEEEEECCCCSCSSSSS-HH---HHHHHHHHHH-HCCSEEEEEEET
T ss_pred             HHHHHhCC--CeeccCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcc-hh---HHHHHHHHhc-CCCCEEEEEecC
Confidence            57888876  3446777887764432  333 4568999999984431111 11   2223344332 246999999998


Q ss_pred             CCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293           78 KWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  157 (162)
Q Consensus        78 ~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~  157 (162)
                      ...  .....++..+.+.++|+++|.||+|+..........+.+.+.   .+   .+++++||++|.|++++++++.+.+
T Consensus        92 ~~~--~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~---~~---~~~~~~SA~~~~~v~~l~~~l~~~~  163 (165)
T 2wji_A           92 TAL--ERNLYLTLQLMEMGANLLLALNKMDLAKSLGIEIDVDKLEKI---LG---VKVVPLSAAKKMGIEELKKAISIAV  163 (165)
T ss_dssp             TCH--HHHHHHHHHHHHTTCCEEEEEECHHHHHHTTCCCCHHHHHHH---HT---SCEEECBGGGTBSHHHHHHHHHHHT
T ss_pred             Cch--hHhHHHHHHHHhcCCCEEEEEEchHhccccChhhHHHHHHHH---hC---CCEEEEEcCCCCCHHHHHHHHHHHh
Confidence            752  122334455555689999999999975221111111222222   22   4899999999999999999998765

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=99.69  E-value=1.9e-16  Score=104.50  Aligned_cols=141  Identities=10%  Similarity=-0.056  Sum_probs=82.1

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEeCC---ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKLGT---KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT   77 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~~~---~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~   77 (162)
                      |+|+|++. ....+.+.+|.+........+.   ++.++||||+....        +......+   .+.++++++|+|.
T Consensus        20 l~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~--------~~~~~~~~---~~~~~~~i~v~d~   87 (175)
T 2nzj_A           20 LASLFAGK-QERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLD--------KSWSQESC---LQGGSAYVIVYSI   87 (175)
T ss_dssp             HHHHHHCC------CCCSSSSEEEEEEEETTEEEEEEEECCC---------------CHHHHHT---TTSCSEEEEEEET
T ss_pred             HHHHHhcC-CCccccCccccceeEEEEEECCEEEEEEEEecCCCCccc--------hhhhHHhh---cccCCEEEEEEEC
Confidence            57888887 4555667788776555555533   57899999983210        01112222   2346999999998


Q ss_pred             CCCCCccH-HHHHHHHHHh----CCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHH
Q 031293           78 KWGVKPRD-HELISLMERS----QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTV  152 (162)
Q Consensus        78 ~~~~~~~~-~~~~~~l~~~----~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~  152 (162)
                      ..+.+-.. ..++..+...    ++|+++|+||+|+.+......  +..+......+   .+++++||++|.|+++++++
T Consensus        88 ~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~--~~~~~~~~~~~---~~~~~~Sa~~g~gi~~l~~~  162 (175)
T 2nzj_A           88 ADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSV--EEGRACAVVFD---CKFIETSATLQHNVAELFEG  162 (175)
T ss_dssp             TCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCH--HHHHHHHHHHT---SEEEECBTTTTBSHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCH--HHHHHHHHHcC---CeEEEEecCCCCCHHHHHHH
Confidence            75321111 1233334432    689999999999975322211  11222222222   48999999999999999999


Q ss_pred             HHHhhh
Q 031293          153 LSKIAR  158 (162)
Q Consensus       153 i~~~~~  158 (162)
                      |.+.+.
T Consensus       163 l~~~~~  168 (175)
T 2nzj_A          163 VVRQLR  168 (175)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            988764

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=99.68  E-value=2.3e-16  Score=122.16  Aligned_cols=111  Identities=20%  Similarity=0.199  Sum_probs=82.6

Q ss_pred             CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCCC
Q 031293           31 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF  110 (162)
Q Consensus        31 ~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~  110 (162)
                      ..+.++|||||             .++.....+..+.+|++++|+|+.++...++...+..+...++|+++|+||+|+.+
T Consensus        71 ~~l~liDTPGh-------------~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~~ipiIvViNKiDl~~  137 (599)
T 3cb4_D           71 YQLNFIDTPGH-------------VDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDLEVVPVLNKIDLPA  137 (599)
T ss_dssp             EEEEEEECCCC-------------GGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHTTCEEEEEEECTTSTT
T ss_pred             EEEEEEECCCc-------------hHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEeeeccCccc
Confidence            35889999999             33333344444557999999999998888887777766677899999999999985


Q ss_pred             cHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293          111 PIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR  158 (162)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~  158 (162)
                      .. .....+.+.+.+   +....+++++||++|.|+++++++|.+.++
T Consensus       138 a~-~~~v~~ei~~~l---g~~~~~vi~vSAktg~GI~~Ll~~I~~~lp  181 (599)
T 3cb4_D          138 AD-PERVAEEIEDIV---GIDATDAVRCSAKTGVGVQDVLERLVRDIP  181 (599)
T ss_dssp             CC-HHHHHHHHHHHT---CCCCTTCEEECTTTCTTHHHHHHHHHHHSC
T ss_pred             cc-HHHHHHHHHHHh---CCCcceEEEeecccCCCchhHHHHHhhcCC
Confidence            43 223334444433   222347999999999999999999987654

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=99.68  E-value=3.3e-17  Score=127.36  Aligned_cols=119  Identities=17%  Similarity=0.177  Sum_probs=89.3

Q ss_pred             CCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCC-------CCccHHH
Q 031293           18 PGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG-------VKPRDHE   87 (162)
Q Consensus        18 ~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~-------~~~~~~~   87 (162)
                      +|+|.+.....+   +.++.+|||||+             +.+...+..+.+.+|++++|+|++.+       ...+..+
T Consensus       229 ~GiTid~~~~~~~~~~~~~~iiDTPG~-------------e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e  295 (611)
T 3izq_1          229 RGVTVSICTSHFSTHRANFTIVDAPGH-------------RDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKE  295 (611)
T ss_dssp             TTTCCSCSCCEEECSSCEEEEEECCSS-------------SCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHH
T ss_pred             CCeeEeeeeEEEecCCceEEEEECCCC-------------cccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHH
Confidence            688876655333   557999999999             66788888888999999999999864       3566777


Q ss_pred             HHHHHHHhCCc-eEEEEeccCCCC--cHHHHHHHHHHHHHHHhcCCC--CCCeEEeecCCCCCHHHH
Q 031293           88 LISLMERSQTK-YQVVLTKTDTVF--PIDVARRAMQIEESLKANNSL--VQPVMMVSSKSGAGIRSL  149 (162)
Q Consensus        88 ~~~~l~~~~~~-~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~--~~~i~~~Sa~~~~g~~~l  149 (162)
                      ++..+...++| +++|+||+|+.+  ........+.+...+...+..  ..+++++||++|.|++++
T Consensus       296 ~l~~~~~lgi~~iIVVvNKiDl~~~~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el  362 (611)
T 3izq_1          296 HMLLASSLGIHNLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI  362 (611)
T ss_dssp             HHHHHHTTTCCEEEEEEECTTTTTTCHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred             HHHHHHHcCCCeEEEEEecccccchhHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence            77777777765 999999999986  333444455555555443321  358999999999999854

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=99.68  E-value=3.1e-16  Score=117.77  Aligned_cols=120  Identities=19%  Similarity=0.262  Sum_probs=84.0

Q ss_pred             CCCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCC-------CCccH
Q 031293           16 DKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG-------VKPRD   85 (162)
Q Consensus        16 ~~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~-------~~~~~   85 (162)
                      ..+|+|.+..+..+   +.++.++|||||             .++...+....+.+|++++|+|+.++       +..+.
T Consensus        66 ~~~giTi~~~~~~~~~~~~~~~iiDtpG~-------------~~f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt  132 (435)
T 1jny_A           66 RERGVTINLTFMRFETKKYFFTIIDAPGH-------------RDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQT  132 (435)
T ss_dssp             -----------CEEECSSCEEEECCCSSS-------------TTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHH
T ss_pred             HhcCceeEeeEEEEecCCeEEEEEECCCc-------------HHHHHHHHhhhhhcCEEEEEEECCCCccccccccchHH
Confidence            36788887765433   567999999999             66677777888899999999999887       66677


Q ss_pred             HHHHHHHHHhCC-ceEEEEeccCCCC----cHHHHHHHHHHHHHHHhcCCC--CCCeEEeecCCCCCHHH
Q 031293           86 HELISLMERSQT-KYQVVLTKTDTVF----PIDVARRAMQIEESLKANNSL--VQPVMMVSSKSGAGIRS  148 (162)
Q Consensus        86 ~~~~~~l~~~~~-~~ivv~nK~Dl~~----~~~~~~~~~~~~~~~~~~~~~--~~~i~~~Sa~~~~g~~~  148 (162)
                      .+++..+...++ |+++++||+|+.+    +.......+.+++.+...+..  ..+++++||++|.|+.+
T Consensus       133 ~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e  202 (435)
T 1jny_A          133 REHIILAKTMGLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITH  202 (435)
T ss_dssp             HHHHHHHHHTTCTTCEEEEECGGGSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTB
T ss_pred             HHHHHHHHHcCCCeEEEEEEcccCCCccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCccccc
Confidence            777777777776 4899999999986    233455556677766655432  36899999999999873

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=99.68  E-value=8.4e-17  Score=105.43  Aligned_cols=140  Identities=11%  Similarity=-0.015  Sum_probs=75.6

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEe--CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecC
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTK   78 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~--~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~   78 (162)
                      |+|+|++. ....+++.+|++........  ...+.++||||+..          +......++   ..+|++++|+|..
T Consensus        18 li~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----------~~~~~~~~~---~~~~~~i~v~d~~   83 (166)
T 3q72_A           18 LARIFGGV-EDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDG----------GRWLPGHCM---AMGDAYVIVYSVT   83 (166)
T ss_dssp             HHHHHCCC-----------CEEEEEEEETTEEEEEEEEECC----------------------------CCEEEEEEETT
T ss_pred             HHHHHcCc-cccCCCCccccceEEEEEECCEEEEEEEEECCCCcc----------chhhhhhhh---hhCCEEEEEEECC
Confidence            57888887 45667788888875443222  23478999999822          233333443   3459999999987


Q ss_pred             CCCCccH-HHHHHHHHH----hCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHH
Q 031293           79 WGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVL  153 (162)
Q Consensus        79 ~~~~~~~-~~~~~~l~~----~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i  153 (162)
                      .+.+-.. ..++..+..    .++|+++|+||+|+.+......  +..+......+   .+++++||++|.|+++++++|
T Consensus        84 ~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~--~~~~~~~~~~~---~~~~~~Sa~~~~gi~~l~~~l  158 (166)
T 3q72_A           84 DKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSV--DEGRACAVVFD---CKFIETSAALHHNVQALFEGV  158 (166)
T ss_dssp             CHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCH--HHHHHHHHHTT---CEEEECBGGGTBSHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCH--HHHHHHHHHhC---CcEEEeccCCCCCHHHHHHHH
Confidence            5421111 122333332    3689999999999975432211  11222233333   489999999999999999999


Q ss_pred             HHhhhh
Q 031293          154 SKIARF  159 (162)
Q Consensus       154 ~~~~~~  159 (162)
                      .+.+..
T Consensus       159 ~~~~~~  164 (166)
T 3q72_A          159 VRQIRL  164 (166)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            987754

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=99.68  E-value=5e-17  Score=109.04  Aligned_cols=141  Identities=16%  Similarity=0.167  Sum_probs=82.2

Q ss_pred             ChhcccCCC-CceeccCCCCcceEEEEEEe-CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecC
Q 031293            1 MLNALTRQW-GVVRTSDKPGLTQTINFFKL-GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTK   78 (162)
Q Consensus         1 lin~L~~~~-~~~~~~~~~g~t~~~~~~~~-~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~   78 (162)
                      |+|+|++.. ......++.|.  ....... +.++.++||||+...          ......+   ...+|++++|+|+.
T Consensus        37 li~~l~~~~~~~~~~~~t~~~--~~~~~~~~~~~~~l~Dt~G~~~~----------~~~~~~~---~~~~d~ii~v~d~~  101 (190)
T 2h57_A           37 IINKLKPSNAQSQNILPTIGF--SIEKFKSSSLSFTVFDMSGQGRY----------RNLWEHY---YKEGQAIIFVIDSS  101 (190)
T ss_dssp             HHHHTSCGGGCCSSCCCCSSE--EEEEEECSSCEEEEEEECCSTTT----------GGGGGGG---GGGCSEEEEEEETT
T ss_pred             HHHHHhcCCCCCCCcCCccce--eEEEEEECCEEEEEEECCCCHHH----------HHHHHHH---HhcCCEEEEEEECC
Confidence            467887762 11122222221  2222222 557999999998322          2222233   34569999999997


Q ss_pred             CCC--CccHHHHHHHHHH-----hCCceEEEEeccCCCCcHHHHHHHHHHHHHHH--hcCCCCCCeEEeecCCCCCHHHH
Q 031293           79 WGV--KPRDHELISLMER-----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLK--ANNSLVQPVMMVSSKSGAGIRSL  149 (162)
Q Consensus        79 ~~~--~~~~~~~~~~l~~-----~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~Sa~~~~g~~~l  149 (162)
                      .+.  .....++...+..     .++|+++|+||+|+.+....++    +.+.+.  .......+++++||++|.|++++
T Consensus       102 ~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~----~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  177 (190)
T 2h57_A          102 DRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVK----VSQLLCLENIKDKPWHICASDAIKGEGLQEG  177 (190)
T ss_dssp             CHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHH----HHHHHTGGGCCSSCEEEEECBTTTTBTHHHH
T ss_pred             CHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHH----HHHHhChhhccCCceEEEEccCCCCcCHHHH
Confidence            642  1111222233333     3689999999999975432222    222332  11112358999999999999999


Q ss_pred             HHHHHHhhhhh
Q 031293          150 RTVLSKIARFA  160 (162)
Q Consensus       150 ~~~i~~~~~~~  160 (162)
                      +++|.+.++..
T Consensus       178 ~~~l~~~i~~~  188 (190)
T 2h57_A          178 VDWLQDQIQTV  188 (190)
T ss_dssp             HHHHHHHC---
T ss_pred             HHHHHHHHHHh
Confidence            99999887644

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=99.67  E-value=1.7e-17  Score=125.15  Aligned_cols=140  Identities=23%  Similarity=0.296  Sum_probs=91.4

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEE--EEe-CCceEEEcCCCCcccccCHHHHHHHHHH-HHHHHhcCcccceeEEEee
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINF--FKL-GTKLCLVDLPGYGFAYAKEEVKDAWEEL-VKEYVSTRVSLKRVCLLID   76 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~--~~~-~~~~~ivDtpG~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~vi~vid   76 (162)
                      |+|+|++. ..+.++..||+|++...  ..+ +..+.++||||+...      ...++.+ ++.+......+|++++|+|
T Consensus       240 Lln~L~~~-~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~------~~~ve~~gi~~~~~~~~~aD~vl~VvD  312 (462)
T 3geh_A          240 LLNAWSQS-DRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRET------SDQVEKIGVERSRQAANTADLVLLTID  312 (462)
T ss_dssp             HHHHHHHH-HBSCCSCCTTCCHHHHHHEEEETTEEEEECC--------------------------CCCCSCSEEEEEEE
T ss_pred             HHHHHhCC-CcccccCCCCeeEEEEEEEEEECCEEEEEEECCccccc------hhHHHHHHHHHHhhhhhcCCEEEEEec
Confidence            57899887 46778999999986642  223 556999999998432      1111221 3445556677899999999


Q ss_pred             cCCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHh
Q 031293           77 TKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKI  156 (162)
Q Consensus        77 ~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~  156 (162)
                      +..+....+.+++..+.  ..|+++|+||+|+.+.....        .+... ....+++++||++|.|+++++++|.+.
T Consensus       313 ~s~~~~~~~~~i~~~l~--~~piivV~NK~Dl~~~~~~~--------~~~~~-~~~~~~i~iSAktg~Gi~eL~~~i~~~  381 (462)
T 3geh_A          313 AATGWTTGDQEIYEQVK--HRPLILVMNKIDLVEKQLIT--------SLEYP-ENITQIVHTAAAQKQGIDSLETAILEI  381 (462)
T ss_dssp             TTTCSCHHHHHHHHHHT--TSCEEEEEECTTSSCGGGST--------TCCCC-TTCCCEEEEBTTTTBSHHHHHHHHHHH
T ss_pred             cCCCCCHHHHHHHHhcc--CCcEEEEEECCCCCcchhhH--------HHHHh-ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            99887776666666554  47999999999998654321        01111 123589999999999999999999987


Q ss_pred             hh
Q 031293          157 AR  158 (162)
Q Consensus       157 ~~  158 (162)
                      +.
T Consensus       382 ~~  383 (462)
T 3geh_A          382 VQ  383 (462)
T ss_dssp             HT
T ss_pred             Hh
Confidence            64

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=99.67  E-value=4.3e-17  Score=109.63  Aligned_cols=140  Identities=14%  Similarity=0.063  Sum_probs=89.7

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEeC---CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKLG---TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT   77 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~~---~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~   77 (162)
                      |+|+|++........+.+|.+........+   .++.++||||....          ......++.   .+|++++|+|+
T Consensus        39 li~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~~~~~~---~~d~iilV~d~  105 (192)
T 2fg5_A           39 IVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERF----------HSLAPMYYR---GSAAAVIVYDI  105 (192)
T ss_dssp             HHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGG----------GGGTHHHHT---TCSEEEEEEET
T ss_pred             HHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhh----------HhhhHHhhc---cCCEEEEEEeC
Confidence            578887773334566777777655544442   35899999997321          223334433   45999999998


Q ss_pred             CCCCCccH-HHHHHHHHHh---CCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHH
Q 031293           78 KWGVKPRD-HELISLMERS---QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVL  153 (162)
Q Consensus        78 ~~~~~~~~-~~~~~~l~~~---~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i  153 (162)
                      ..+.+-.. ..++..+...   ++|+++|+||+|+.+.....  .+..++.+...+   .+++++||++|.|+++++++|
T Consensus       106 ~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~--~~~~~~~~~~~~---~~~~~~Sa~~~~gi~~l~~~l  180 (192)
T 2fg5_A          106 TKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVP--LKDAKEYAESIG---AIVVETSAKNAINIEELFQGI  180 (192)
T ss_dssp             TCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSC--HHHHHHHHHTTT---CEEEECBTTTTBSHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccC--HHHHHHHHHHcC---CEEEEEeCCCCcCHHHHHHHH
Confidence            76432211 2233444433   68999999999996422211  123333444333   489999999999999999999


Q ss_pred             HHhhh
Q 031293          154 SKIAR  158 (162)
Q Consensus       154 ~~~~~  158 (162)
                      .+.+.
T Consensus       181 ~~~i~  185 (192)
T 2fg5_A          181 SRQIP  185 (192)
T ss_dssp             HHTCC
T ss_pred             HHHHH
Confidence            88664

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=99.67  E-value=3.8e-17  Score=126.46  Aligned_cols=114  Identities=22%  Similarity=0.349  Sum_probs=82.0

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCCCc
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP  111 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~  111 (162)
                      .+.++|||||..             +.....+..+.+|++++|+|+.+++..++.+.+..+...++|+++|+||+|+...
T Consensus        71 ~i~liDTPGhe~-------------F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~~vPiIVViNKiDl~~~  137 (594)
T 1g7s_A           71 GLFFIDTPGHEA-------------FTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRIHG  137 (594)
T ss_dssp             EEEEECCCTTSC-------------CTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCCEEEEEECGGGSTT
T ss_pred             CEEEEECCCcHH-------------HHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCeEEEEecccccccc
Confidence            389999999932             2222234456789999999999999888888888888889999999999999631


Q ss_pred             -----------------HHH----HHHHHHHHHHHHhcC------------CCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293          112 -----------------IDV----ARRAMQIEESLKANN------------SLVQPVMMVSSKSGAGIRSLRTVLSKIAR  158 (162)
Q Consensus       112 -----------------~~~----~~~~~~~~~~~~~~~------------~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~  158 (162)
                                       ..+    .+....+.+.+...+            ....+++++||++|.|+++|+++|...++
T Consensus       138 ~~~~~~~~~~e~sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~  217 (594)
T 1g7s_A          138 WRVHEGRPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ  217 (594)
T ss_dssp             CCCCTTCCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             cccccCCchHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcc
Confidence                             111    111222223332221            12348999999999999999999987654

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.67  E-value=2.3e-16  Score=104.58  Aligned_cols=139  Identities=16%  Similarity=0.138  Sum_probs=82.1

Q ss_pred             ChhcccCCCCceeccCCCCcceEEE--EEEeCC---ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEe
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTIN--FFKLGT---KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLI   75 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~--~~~~~~---~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vi   75 (162)
                      |+|+|++. ........|.++.+..  .+..+.   ++.++||||+             +.+..........+|++++|+
T Consensus        26 li~~l~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~-------------~~~~~~~~~~~~~~d~ii~v~   91 (180)
T 2g6b_A           26 LLVRFKDG-AFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQ-------------ERFRSVTHAYYRDAHALLLLY   91 (180)
T ss_dssp             HHHHHHHS-CCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC---------------------CCGGGCSEEEEEE
T ss_pred             HHHHHHhC-CCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCc-------------HHHHHHHHHHccCCCEEEEEE
Confidence            46777766 2322233444444433  233332   5889999998             222222223345679999999


Q ss_pred             ecCCCCCccH-HHHHHHHHH---hCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHH
Q 031293           76 DTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRT  151 (162)
Q Consensus        76 d~~~~~~~~~-~~~~~~l~~---~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~  151 (162)
                      |+..+.+-.. ..++..+..   .++|+++|+||+|+.+......  +..++.....+   .+++++||++|.|+++++.
T Consensus        92 d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~--~~~~~~~~~~~---~~~~~~Sa~~~~gi~~l~~  166 (180)
T 2g6b_A           92 DVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKR--EDGEKLAKEYG---LPFMETSAKTGLNVDLAFT  166 (180)
T ss_dssp             ETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCH--HHHHHHHHHHT---CCEEECCTTTCTTHHHHHH
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCH--HHHHHHHHHcC---CeEEEEeCCCCCCHHHHHH
Confidence            9876432111 223344433   4689999999999975332110  11222223232   4899999999999999999


Q ss_pred             HHHHhhh
Q 031293          152 VLSKIAR  158 (162)
Q Consensus       152 ~i~~~~~  158 (162)
                      +|.+.+.
T Consensus       167 ~l~~~~~  173 (180)
T 2g6b_A          167 AIAKELK  173 (180)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9988764

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=99.67  E-value=1.6e-16  Score=120.32  Aligned_cols=120  Identities=18%  Similarity=0.195  Sum_probs=74.4

Q ss_pred             CCCcceEEEE--EEe-CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCC-------CccHH
Q 031293           17 KPGLTQTINF--FKL-GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV-------KPRDH   86 (162)
Q Consensus        17 ~~g~t~~~~~--~~~-~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~-------~~~~~   86 (162)
                      .+|+|.+..+  +.. +.++.++|||||             +.+...+..+.+.+|++++|+|+.++.       ..+..
T Consensus       104 ~~giTi~~~~~~~~~~~~~~~iiDtPGh-------------~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~  170 (467)
T 1r5b_A          104 EKGKTVEVGRAYFETEHRRFSLLDAPGH-------------KGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTR  170 (467)
T ss_dssp             ---------CCEEECSSEEEEECCCCC------------------------TTSCSEEEEEEECSTTHHHHTTSTTCCHH
T ss_pred             hcCceEEeeeEEEecCCeEEEEEECCCc-------------HHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHH
Confidence            5677876664  333 456999999999             677788888888999999999998864       24667


Q ss_pred             HHHHHHHHhCCc-eEEEEeccCCCC----cHHHHHHHHHHHHHHHhc-CCC---CCCeEEeecCCCCCHHHH
Q 031293           87 ELISLMERSQTK-YQVVLTKTDTVF----PIDVARRAMQIEESLKAN-NSL---VQPVMMVSSKSGAGIRSL  149 (162)
Q Consensus        87 ~~~~~l~~~~~~-~ivv~nK~Dl~~----~~~~~~~~~~~~~~~~~~-~~~---~~~i~~~Sa~~~~g~~~l  149 (162)
                      +++..+...++| +++|+||+|+..    +.......+.+.+.+... +..   ..+++++||++|.|++++
T Consensus       171 e~l~~~~~~~vp~iivviNK~Dl~~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l  242 (467)
T 1r5b_A          171 EHAVLARTQGINHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDR  242 (467)
T ss_dssp             HHHHHHHHTTCSSEEEEEECTTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSC
T ss_pred             HHHHHHHHcCCCEEEEEEECccCCCccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEecccccccccccc
Confidence            777777777898 999999999964    233445555566665544 322   357999999999998764

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.67  E-value=9.6e-16  Score=104.58  Aligned_cols=139  Identities=19%  Similarity=0.301  Sum_probs=84.3

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEeC----CceEEEcCCCCcccccCHHHHHHHHH-HHHHHHhcCcccceeEEEe
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKLG----TKLCLVDLPGYGFAYAKEEVKDAWEE-LVKEYVSTRVSLKRVCLLI   75 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~~----~~~~ivDtpG~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~vi~vi   75 (162)
                      |+|+|++..   .....++++.+...+..+    .++.+|||||+          +.+.. +...+   .+.++++++|+
T Consensus        23 li~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~----------~~~~~~~~~~~---~~~~~~~i~v~   86 (214)
T 2fh5_B           23 LFVRLLTGQ---YRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGH----------ESLRFQLLDRF---KSSARAVVFVV   86 (214)
T ss_dssp             HHHHHHHSC---CCCBCCCCSCEEEEEECSSTTCCEEEEEECCCC----------HHHHHHHHHHH---GGGEEEEEEEE
T ss_pred             HHHHHhCCC---cccccCCcceeeEEEEecCCCccEEEEEECCCC----------hhHHHHHHHHH---HhhCCEEEEEE
Confidence            467777662   223344444444444443    35999999999          22233 34444   34569999999


Q ss_pred             ecCCCCCccHHHHH----HHHHH-----hCCceEEEEeccCCCCcHHHHHHHHHHHHHHHh-------------------
Q 031293           76 DTKWGVKPRDHELI----SLMER-----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKA-------------------  127 (162)
Q Consensus        76 d~~~~~~~~~~~~~----~~l~~-----~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-------------------  127 (162)
                      |+... ........    ..+..     .++|+++|+||+|+.+........+.+.+.+..                   
T Consensus        87 d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~~~~~  165 (214)
T 2fh5_B           87 DSAAF-QREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAP  165 (214)
T ss_dssp             ETTTH-HHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC------------C
T ss_pred             ECCCc-CHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCCcccc
Confidence            98751 11111222    22221     258999999999998655455555555554441                   


Q ss_pred             cCCC-------------CCCeEEeecCCC------CCHHHHHHHHHHh
Q 031293          128 NNSL-------------VQPVMMVSSKSG------AGIRSLRTVLSKI  156 (162)
Q Consensus       128 ~~~~-------------~~~i~~~Sa~~~------~g~~~l~~~i~~~  156 (162)
                      ....             ..+++++||++|      .|+++++++|.+.
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~  213 (214)
T 2fh5_B          166 AQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI  213 (214)
T ss_dssp             CCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred             ccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence            0111             357999999999      9999999999875

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=99.67  E-value=6.6e-17  Score=107.84  Aligned_cols=139  Identities=17%  Similarity=0.198  Sum_probs=85.1

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEeCCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCC
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG   80 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~   80 (162)
                      |+|+|++. ....+.+++|.+.....+. +.++.++||||+..          +......++.   .+|++++|+|+..+
T Consensus        32 L~~~l~~~-~~~~~~~t~g~~~~~~~~~-~~~l~i~Dt~G~~~----------~~~~~~~~~~---~~~~~i~v~d~~~~   96 (181)
T 1fzq_A           32 LLKQLASE-DISHITPTQGFNIKSVQSQ-GFKLNVWDIGGQRK----------IRPYWRSYFE---NTDILIYVIDSADR   96 (181)
T ss_dssp             HHHHHCCS-CCEEEEEETTEEEEEEEET-TEEEEEEECSSCGG----------GHHHHHHHHT---TCSEEEEEEETTCG
T ss_pred             HHHHHhcC-CCCcccCcCCeEEEEEEEC-CEEEEEEECCCCHH----------HHHHHHHHhC---CCCEEEEEEECcCH
Confidence            46777776 4455666666543222121 45689999999822          2334444543   45999999998764


Q ss_pred             CCccH-HHHHH-HHH---HhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHh--cCCCCCCeEEeecCCCCCHHHHHHHH
Q 031293           81 VKPRD-HELIS-LME---RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKA--NNSLVQPVMMVSSKSGAGIRSLRTVL  153 (162)
Q Consensus        81 ~~~~~-~~~~~-~l~---~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~Sa~~~~g~~~l~~~i  153 (162)
                      .+-.. ..++. .+.   ..++|+++|+||+|+.+....++    +.+.++.  ......+++++||++|.|+++++++|
T Consensus        97 ~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~----~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l  172 (181)
T 1fzq_A           97 KRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASE----IAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWV  172 (181)
T ss_dssp             GGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHH----HHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCCHHH----HHHHhCchhccCCceEEEEccCCCCCCHHHHHHHH
Confidence            22111 11222 222   13689999999999975432222    2222221  11123478999999999999999999


Q ss_pred             HHhhh
Q 031293          154 SKIAR  158 (162)
Q Consensus       154 ~~~~~  158 (162)
                      .+.+.
T Consensus       173 ~~~~~  177 (181)
T 1fzq_A          173 CKNVN  177 (181)
T ss_dssp             HHTC-
T ss_pred             HHHHH
Confidence            88664

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=99.67  E-value=1.5e-16  Score=105.33  Aligned_cols=139  Identities=14%  Similarity=0.121  Sum_probs=85.2

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEeCC---ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKLGT---KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT   77 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~~~---~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~   77 (162)
                      |+|+|++........+..|.+.....+..+.   .+.++||||+...          ......++.   .+|++++|+|+
T Consensus        31 li~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----------~~~~~~~~~---~~d~~i~v~d~   97 (179)
T 1z0f_A           31 LLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERF----------RAVTRSYYR---GAAGALMVYDI   97 (179)
T ss_dssp             HHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGT----------CHHHHHHHH---TCSEEEEEEET
T ss_pred             HHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHh----------hhhHHHHhc---cCCEEEEEEeC
Confidence            4677777632222334444444444444432   5899999998321          233444443   35999999998


Q ss_pred             CCCCCccH-HHHHHHHHH---hCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHH
Q 031293           78 KWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVL  153 (162)
Q Consensus        78 ~~~~~~~~-~~~~~~l~~---~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i  153 (162)
                      ..+.+... ..++..+..   .+.|+++|+||+|+.+.....  .+..++.+...+   .+++++||++|.|+++++.+|
T Consensus        98 ~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~--~~~~~~~~~~~~---~~~~~~Sa~~~~gi~~l~~~l  172 (179)
T 1z0f_A           98 TRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVT--YEEAKQFAEENG---LLFLEASAKTGENVEDAFLEA  172 (179)
T ss_dssp             TCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSC--HHHHHHHHHHTT---CEEEECCTTTCTTHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccC--HHHHHHHHHHcC---CEEEEEeCCCCCCHHHHHHHH
Confidence            76432212 123333333   368899999999996432211  122333334333   489999999999999999999


Q ss_pred             HHhh
Q 031293          154 SKIA  157 (162)
Q Consensus       154 ~~~~  157 (162)
                      .+.+
T Consensus       173 ~~~i  176 (179)
T 1z0f_A          173 AKKI  176 (179)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8765

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=99.67  E-value=4.4e-16  Score=104.92  Aligned_cols=139  Identities=14%  Similarity=0.144  Sum_probs=83.0

Q ss_pred             ChhcccCCCCceec--cCCCCcceEEEEEEe-CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293            1 MLNALTRQWGVVRT--SDKPGLTQTINFFKL-GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT   77 (162)
Q Consensus         1 lin~L~~~~~~~~~--~~~~g~t~~~~~~~~-~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~   77 (162)
                      |+|+|++.. ...+  .++.|.+.  ..+.. +.++.++||||+...          ......+   .+.+|++++|+|+
T Consensus        33 l~~~l~~~~-~~~~~~~~t~~~~~--~~~~~~~~~~~i~Dt~G~~~~----------~~~~~~~---~~~~d~ii~v~D~   96 (199)
T 4bas_A           33 IINQVKPAQ-SSSKHITATVGYNV--ETFEKGRVAFTVFDMGGAKKF----------RGLWETY---YDNIDAVIFVVDS   96 (199)
T ss_dssp             HHHHHSCCC-----CCCCCSSEEE--EEEEETTEEEEEEEECCSGGG----------GGGGGGG---CTTCSEEEEEEET
T ss_pred             HHHHHhcCC-CcccccccccceeE--EEEEeCCEEEEEEECCCCHhH----------HHHHHHH---HhcCCEEEEEEEC
Confidence            578888773 3333  44444322  12222 446899999998221          2222233   3567999999999


Q ss_pred             CCCCCccH-HHHHHHHHHh-----------CCceEEEEeccCCCCcHHHHHHHHHHHHH-H-HhcCCCCCCeEEeecCCC
Q 031293           78 KWGVKPRD-HELISLMERS-----------QTKYQVVLTKTDTVFPIDVARRAMQIEES-L-KANNSLVQPVMMVSSKSG  143 (162)
Q Consensus        78 ~~~~~~~~-~~~~~~l~~~-----------~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~-~-~~~~~~~~~i~~~Sa~~~  143 (162)
                      ..+.+-.. ..++..+...           ++|+++|+||+|+.+.....+..+.+... + ..   ...+++++||++|
T Consensus        97 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~Sa~~g  173 (199)
T 4bas_A           97 SDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGD---HPFVIFASNGLKG  173 (199)
T ss_dssp             TCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTT---SCEEEEECBTTTT
T ss_pred             CcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccC---CeeEEEEeeCCCc
Confidence            86532111 1223322222           78999999999998653332222222211 1 21   2358999999999


Q ss_pred             CCHHHHHHHHHHhhh
Q 031293          144 AGIRSLRTVLSKIAR  158 (162)
Q Consensus       144 ~g~~~l~~~i~~~~~  158 (162)
                      .|+++++++|.+.+.
T Consensus       174 ~gv~~l~~~l~~~~~  188 (199)
T 4bas_A          174 TGVHEGFSWLQETAS  188 (199)
T ss_dssp             BTHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHH
Confidence            999999999988664

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=99.67  E-value=1.5e-16  Score=105.68  Aligned_cols=140  Identities=12%  Similarity=0.094  Sum_probs=83.9

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEeC---CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKLG---TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT   77 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~~---~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~   77 (162)
                      |+|+|++........+..|.+........+   .++.++||||+...          ......++.   .+|++++|+|+
T Consensus        28 li~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~~~~~~---~~d~~i~v~d~   94 (181)
T 2efe_B           28 LVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERY----------HSLAPMYYR---GAAAAIIVFDV   94 (181)
T ss_dssp             HHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGG----------GGGTHHHHT---TCSEEEEEEET
T ss_pred             HHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhh----------hhhhHHHhc---cCCEEEEEEEC
Confidence            467777662211122233333333333333   35899999998321          223334433   45999999998


Q ss_pred             CCCCCc-cHHHHHHHHHHh---CCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHH
Q 031293           78 KWGVKP-RDHELISLMERS---QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVL  153 (162)
Q Consensus        78 ~~~~~~-~~~~~~~~l~~~---~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i  153 (162)
                      ..+.+- ....++..+...   ++|+++|+||+|+.+.....  .+..++.....+   .+++++||++|.|+++++.+|
T Consensus        95 ~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~--~~~~~~~~~~~~---~~~~~~Sa~~g~gi~~l~~~l  169 (181)
T 2efe_B           95 TNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVT--AEDAQTYAQENG---LFFMETSAKTATNVKEIFYEI  169 (181)
T ss_dssp             TCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSC--HHHHHHHHHHTT---CEEEECCSSSCTTHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCC--HHHHHHHHHHcC---CEEEEEECCCCCCHHHHHHHH
Confidence            764321 122344444433   68899999999997533211  122333333333   489999999999999999999


Q ss_pred             HHhhh
Q 031293          154 SKIAR  158 (162)
Q Consensus       154 ~~~~~  158 (162)
                      .+.+.
T Consensus       170 ~~~~~  174 (181)
T 2efe_B          170 ARRLP  174 (181)
T ss_dssp             HHTCC
T ss_pred             HHHHH
Confidence            87654

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=99.67  E-value=2e-16  Score=105.62  Aligned_cols=138  Identities=17%  Similarity=0.130  Sum_probs=83.9

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEe-CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCC
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKL-GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW   79 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~-~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~   79 (162)
                      |+|+|++.. .....++.|.+.  ..... +.++.++||||+             ..+........+.+|++++|+|+..
T Consensus        34 l~~~l~~~~-~~~~~~t~~~~~--~~~~~~~~~~~~~Dt~G~-------------~~~~~~~~~~~~~~d~ii~v~d~~~   97 (186)
T 1ksh_A           34 ILKKFNGED-VDTISPTLGFNI--KTLEHRGFKLNIWDVGGQ-------------KSLRSYWRNYFESTDGLIWVVDSAD   97 (186)
T ss_dssp             HHHHHTTCC-CSSCCCCSSEEE--EEEEETTEEEEEEEECCS-------------HHHHTTGGGGCTTCSEEEEEEETTC
T ss_pred             HHHHHhcCC-CCcccccCccce--EEEEECCEEEEEEECCCC-------------HhHHHHHHHHhcCCCEEEEEEECcC
Confidence            467888773 333333444332  12222 456899999999             3322222233456799999999976


Q ss_pred             CCCccH-HHHHH-HHHH---hCCceEEEEeccCCCCcHHHHHHHHHHHHHHHh--cCCCCCCeEEeecCCCCCHHHHHHH
Q 031293           80 GVKPRD-HELIS-LMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKA--NNSLVQPVMMVSSKSGAGIRSLRTV  152 (162)
Q Consensus        80 ~~~~~~-~~~~~-~l~~---~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~Sa~~~~g~~~l~~~  152 (162)
                      +.+-.. ..++. .+..   .++|+++|+||+|+.+.....+    +.+.+..  ......+++++||++|.|+++++++
T Consensus        98 ~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~----~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  173 (186)
T 1ksh_A           98 RQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNA----IQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDW  173 (186)
T ss_dssp             GGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHH----HHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCHHH----HHHHhChhhccCCceEEEEeeCCCCCCHHHHHHH
Confidence            532211 12222 2222   3689999999999976433222    2222221  1122358999999999999999999


Q ss_pred             HHHhhh
Q 031293          153 LSKIAR  158 (162)
Q Consensus       153 i~~~~~  158 (162)
                      |.+.+.
T Consensus       174 l~~~i~  179 (186)
T 1ksh_A          174 LLDDIS  179 (186)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            988764

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=99.67  E-value=1.2e-16  Score=107.55  Aligned_cols=140  Identities=15%  Similarity=0.133  Sum_probs=81.8

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEeCC---ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKLGT---KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT   77 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~~~---~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~   77 (162)
                      |+|+|++........+..|.+.....+..+.   ++.++||||+..          +......++.   .+|++++|+|+
T Consensus        42 Li~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~----------~~~~~~~~~~---~~d~iilV~D~  108 (192)
T 2il1_A           42 LMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQER----------FNSITSAYYR---SAKGIILVYDI  108 (192)
T ss_dssp             HHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGG----------GHHHHHHHHH---HCSEEEEEEET
T ss_pred             HHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHH----------HHHHHHHHhc---CCCEEEEEEEC
Confidence            5778877632222233333333333344433   589999999822          2333444443   45999999998


Q ss_pred             CCCCCccH-HHHHHHHHH---hCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHH
Q 031293           78 KWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVL  153 (162)
Q Consensus        78 ~~~~~~~~-~~~~~~l~~---~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i  153 (162)
                      ..+.+... ..++..+..   .++|+++|+||+|+.+.....  .+..++......  ..+++++||++|.|+++++++|
T Consensus       109 ~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~--~~~~~~~~~~~~--~~~~~~~SA~~g~gi~~l~~~l  184 (192)
T 2il1_A          109 TKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREIT--RQQGEKFAQQIT--GMRFCEASAKDNFNVDEIFLKL  184 (192)
T ss_dssp             TCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSC--HHHHHHHHHTST--TCEEEECBTTTTBSHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccC--HHHHHHHHHhcC--CCeEEEEeCCCCCCHHHHHHHH
Confidence            76432222 223344433   368999999999986432211  112233333221  2589999999999999999999


Q ss_pred             HHhh
Q 031293          154 SKIA  157 (162)
Q Consensus       154 ~~~~  157 (162)
                      .+.+
T Consensus       185 ~~~i  188 (192)
T 2il1_A          185 VDDI  188 (192)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8765

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=99.66  E-value=4.5e-19  Score=135.44  Aligned_cols=141  Identities=18%  Similarity=0.216  Sum_probs=100.0

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEe----CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEee
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKL----GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLID   76 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~----~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid   76 (162)
                      |+|+|++. . ......||+|+++..+..    +.++.+||||||             +.+.....+....+|++++|+|
T Consensus        20 Ll~~L~~~-~-~~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGh-------------e~f~~~~~~~~~~aD~vILVVD   84 (537)
T 3izy_P           20 LLDKLRKT-Q-VAAMEAGGITQHIGAFLVSLPSGEKITFLDTPGH-------------AAFSAMRARGTQVTDIVILVVA   84 (537)
T ss_dssp             HHHHHHHH-H-HHHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSS-------------CCTTTSBBSSSBSBSSCEEECB
T ss_pred             HHHHHhCC-C-cccccCCceeEEEeEEEEEeCCCCEEEEEECCCh-------------HHHHHHHHHHHccCCEEEEEEE
Confidence            46777766 2 234567888887776543    446999999999             3344444455677899999999


Q ss_pred             cCCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHH---HHhcCCCCCCeEEeecCCCCCHHHHHHHH
Q 031293           77 TKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEES---LKANNSLVQPVMMVSSKSGAGIRSLRTVL  153 (162)
Q Consensus        77 ~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~---~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i  153 (162)
                      +.++...++.+++..+...++|+++|+||+|+.+.... ...+.+.+.   +... ....+++++||++|.|+++|+++|
T Consensus        85 a~dg~~~qt~e~l~~~~~~~vPiIVViNKiDl~~~~~~-~v~~~l~~~~~~~e~~-~~~~~iv~vSAktG~GI~eLle~I  162 (537)
T 3izy_P           85 ADDGVMKQTVESIQHAKDAHVPIVLAINKCDKAEADPE-KVKKELLAYDVVCEDY-GGDVQAVHVSALTGENMMALAEAT  162 (537)
T ss_dssp             SSSCCCHHHHHHHHHHHTTTCCEEECCBSGGGTTTSCC-SSSSHHHHTTSCCCCS-SSSEEECCCCSSSSCSSHHHHHHH
T ss_pred             CCCCccHHHHHHHHHHHHcCCcEEEEEecccccccchH-HHHHHHHhhhhhHHhc-CCCceEEEEECCCCCCchhHHHHH
Confidence            99999898989888888889999999999998742210 000111111   0111 112479999999999999999999


Q ss_pred             HHhhh
Q 031293          154 SKIAR  158 (162)
Q Consensus       154 ~~~~~  158 (162)
                      ...++
T Consensus       163 ~~l~~  167 (537)
T 3izy_P          163 IALAE  167 (537)
T ss_dssp             HHHHT
T ss_pred             HHhhh
Confidence            88764

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.66  E-value=9.9e-17  Score=107.32  Aligned_cols=139  Identities=16%  Similarity=0.126  Sum_probs=83.6

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEeCCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCC
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG   80 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~   80 (162)
                      |+|+|++.. .....++.|.+.....+ -+.++.++||||+..          +......++   ..+|++++|+|+..+
T Consensus        32 l~~~l~~~~-~~~~~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~----------~~~~~~~~~---~~~d~ii~v~d~~~~   96 (187)
T 1zj6_A           32 ILYQFSMNE-VVHTSPTIGSNVEEIVI-NNTRFLMWDIGGQES----------LRSSWNTYY---TNTEFVIVVVDSTDR   96 (187)
T ss_dssp             HHHHHHTTS-CEEEECCSCSSCEEEEE-TTEEEEEEECCC--------------CGGGHHHH---TTCCEEEEEEETTCT
T ss_pred             HHHHHhcCC-CCcCcCCCccceEEEEE-CCEEEEEEECCCCHh----------HHHHHHHHh---cCCCEEEEEEeCCCH
Confidence            477888663 33555555544322111 145689999999822          122334444   346999999999875


Q ss_pred             CCccH-HHHHH-HHHH---hCCceEEEEeccCCCCcHHHHHHHHHHHHHHHh--cCCCCCCeEEeecCCCCCHHHHHHHH
Q 031293           81 VKPRD-HELIS-LMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKA--NNSLVQPVMMVSSKSGAGIRSLRTVL  153 (162)
Q Consensus        81 ~~~~~-~~~~~-~l~~---~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~Sa~~~~g~~~l~~~i  153 (162)
                      .+-.. ..++. .+..   .+.|+++|+||+|+.+.....+    +.+.+..  ......+++++||++|.|+++++++|
T Consensus        97 ~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~----i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l  172 (187)
T 1zj6_A           97 ERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAE----ISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWM  172 (187)
T ss_dssp             TTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHH----HHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHH----HHHHhChhhhcCCCcEEEEccCCCCcCHHHHHHHH
Confidence            32222 22333 3322   4689999999999975322222    2222221  11223489999999999999999999


Q ss_pred             HHhhh
Q 031293          154 SKIAR  158 (162)
Q Consensus       154 ~~~~~  158 (162)
                      .+.+.
T Consensus       173 ~~~~~  177 (187)
T 1zj6_A          173 MSRLK  177 (187)
T ss_dssp             HHHHC
T ss_pred             HHHHH
Confidence            88664

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=99.66  E-value=1.5e-16  Score=115.79  Aligned_cols=143  Identities=16%  Similarity=0.148  Sum_probs=93.5

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEE--EEeC--CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEee
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINF--FKLG--TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLID   76 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~--~~~~--~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid   76 (162)
                      |+|+|++.  ..+++.+|++|.....  +.++  ..+.++||||+.+...      .+..+...+++....++++++|+|
T Consensus       174 Lln~L~~~--~~~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~------~~~~l~~~fl~~i~~~d~ll~VvD  245 (342)
T 1lnz_A          174 LLSVVSSA--KPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAH------QGVGLGHQFLRHIERTRVIVHVID  245 (342)
T ss_dssp             HHHHSEEE--CCEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTT------CTTTTHHHHHHHHHHCCEEEEEEE
T ss_pred             HHHHHHcC--CCccccCCccccCceEEEEEeCCCceEEEecCCCCccccc------ccchhHHHHHHHHHhccEEEEEEE
Confidence            57888887  3567889998876654  3333  5799999999843210      011233444555556799999999


Q ss_pred             cCCC---CCccH-HHHHHHHHH-----hCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHH
Q 031293           77 TKWG---VKPRD-HELISLMER-----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIR  147 (162)
Q Consensus        77 ~~~~---~~~~~-~~~~~~l~~-----~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~  147 (162)
                      +...   -...+ ..+...+..     .++|+++|+||+|+.+..+   ..+.+.+.+   .. ..+++++||+++.|++
T Consensus       246 ~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~e---~~~~l~~~l---~~-~~~v~~iSA~tg~gi~  318 (342)
T 1lnz_A          246 MSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAE---NLEAFKEKL---TD-DYPVFPISAVTREGLR  318 (342)
T ss_dssp             SSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHH---HHHHHHHHC---CS-CCCBCCCSSCCSSTTH
T ss_pred             CCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCHH---HHHHHHHHh---hc-CCCEEEEECCCCcCHH
Confidence            8651   11111 223445554     3689999999999985432   122333222   21 1589999999999999


Q ss_pred             HHHHHHHHhhh
Q 031293          148 SLRTVLSKIAR  158 (162)
Q Consensus       148 ~l~~~i~~~~~  158 (162)
                      +++.+|.+.+.
T Consensus       319 eL~~~l~~~l~  329 (342)
T 1lnz_A          319 ELLFEVANQLE  329 (342)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHh
Confidence            99999998775

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=99.66  E-value=5.2e-16  Score=105.05  Aligned_cols=139  Identities=12%  Similarity=0.043  Sum_probs=84.1

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEeC---CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKLG---TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT   77 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~~---~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~   77 (162)
                      |+|+|++........+..|.+........+   .++.++||||+..          +......+   ...+|++++|+|+
T Consensus        24 li~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----------~~~~~~~~---~~~~d~ii~v~d~   90 (203)
T 1zbd_A           24 FLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLER----------YRTITTAY---YRGAMGFILMYDI   90 (203)
T ss_dssp             HHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGG----------GHHHHHTT---GGGCSEEEEEEET
T ss_pred             HHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchh----------hcchHHHh---hcCCCEEEEEEEC
Confidence            467887773222233444444443333332   3589999999822          13333333   3456999999998


Q ss_pred             CCCCCccH-HHHHHHHHH---hCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHH
Q 031293           78 KWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVL  153 (162)
Q Consensus        78 ~~~~~~~~-~~~~~~l~~---~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i  153 (162)
                      ..+.+-.. ..++..+..   .+.|+++|+||+|+.+......  +..++.....+   .+++++||++|.|+++++.+|
T Consensus        91 ~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~--~~~~~~~~~~~---~~~~~~Sa~~~~gi~~l~~~l  165 (203)
T 1zbd_A           91 TNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSS--ERGRQLADHLG---FEFFEASAKDNINVKQTFERL  165 (203)
T ss_dssp             TCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCH--HHHHHHHHHHT---CEEEECBTTTTBSSHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCH--HHHHHHHHHCC---CeEEEEECCCCCCHHHHHHHH
Confidence            76422111 223344443   3689999999999975322110  12222233233   489999999999999999999


Q ss_pred             HHhh
Q 031293          154 SKIA  157 (162)
Q Consensus       154 ~~~~  157 (162)
                      .+.+
T Consensus       166 ~~~i  169 (203)
T 1zbd_A          166 VDVI  169 (203)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8755

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.66  E-value=2.4e-16  Score=105.34  Aligned_cols=143  Identities=22%  Similarity=0.257  Sum_probs=91.2

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEE--Ee-CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFF--KL-GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT   77 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~--~~-~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~   77 (162)
                      |+|+|++.  ...++..|++|.+....  .. +.++.++||||+........ .   +.+...++.. ..++++++++|+
T Consensus        23 L~~~l~~~--~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~-~---~~~~~~~~~~-~~~~~~i~v~d~   95 (188)
T 2wjg_A           23 IFNALTGE--NVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSI-D---EIIARDYIIN-EKPDLVVNIVDA   95 (188)
T ss_dssp             HHHHHHTT--CEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSSH-H---HHHHHHHHHH-HCCSEEEEEEEG
T ss_pred             HHHHHhCC--CccccCCCCeeccceEEEEEeCCcEEEEEECCCcCccccccH-H---HHHHHHHHhc-cCCCEEEEEecc
Confidence            57888887  35567788888765543  33 45689999999854321111 1   1223334332 236899999998


Q ss_pred             CCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293           78 KWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  157 (162)
Q Consensus        78 ~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~  157 (162)
                      ...  .....++..+...+.|+++|+||+|+..........+.+.+   ..+   .+++++||++|.|++++++++.+.+
T Consensus        96 ~~~--~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~---~~~---~~~~~~Sa~~~~~v~~l~~~i~~~~  167 (188)
T 2wjg_A           96 TAL--ERNLYLTLQLMEMGANLLLALNKMDLAKSLGIEIDVDKLEK---ILG---VKVVPLSAAKKMGIEELKKAISIAV  167 (188)
T ss_dssp             GGH--HHHHHHHHHHHTTTCCEEEEEECHHHHHHTTCCCCHHHHHH---HHT---SCEEECBGGGTBSHHHHHHHHHHHH
T ss_pred             hhH--HHHHHHHHHHHhcCCCEEEEEEhhhccccccchHHHHHHHH---HhC---CCeEEEEecCCCCHHHHHHHHHHHH
Confidence            751  22233455566668999999999998532211111122222   222   4899999999999999999998876


Q ss_pred             h
Q 031293          158 R  158 (162)
Q Consensus       158 ~  158 (162)
                      .
T Consensus       168 ~  168 (188)
T 2wjg_A          168 K  168 (188)
T ss_dssp             T
T ss_pred             H
Confidence            5

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=99.65  E-value=1.4e-16  Score=120.29  Aligned_cols=119  Identities=18%  Similarity=0.233  Sum_probs=87.9

Q ss_pred             CCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCc-------cHH
Q 031293           17 KPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKP-------RDH   86 (162)
Q Consensus        17 ~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~-------~~~   86 (162)
                      .+|+|.+..+..+   +.++.++|||||             +.+...+..+...+|++++|+|+.++...       ++.
T Consensus        68 ~~GiTi~~~~~~~~~~~~~~~iiDtPGh-------------~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~  134 (458)
T 1f60_A           68 ERGITIDIALWKFETPKYQVTVIDAPGH-------------RDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTR  134 (458)
T ss_dssp             HTTCCCSCSCEEEECSSEEEEEEECCCC-------------TTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHH
T ss_pred             hcCcEEEEEEEEEecCCceEEEEECCCc-------------HHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHH
Confidence            4778876655433   456999999999             66777888888899999999999875422       556


Q ss_pred             HHHHHHHHhCCc-eEEEEeccCCCC--cHHHHHHHHHHHHHHHhcCCC--CCCeEEeecCCCCCHHH
Q 031293           87 ELISLMERSQTK-YQVVLTKTDTVF--PIDVARRAMQIEESLKANNSL--VQPVMMVSSKSGAGIRS  148 (162)
Q Consensus        87 ~~~~~l~~~~~~-~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~--~~~i~~~Sa~~~~g~~~  148 (162)
                      +++..+...++| +++|+||+|+.+  +.......+.+++.+...+..  ..+++++||++|.|+++
T Consensus       135 ~~~~~~~~~~v~~iivviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~  201 (458)
T 1f60_A          135 EHALLAFTLGVRQLIVAVNKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIE  201 (458)
T ss_dssp             HHHHHHHHTTCCEEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred             HHHHHHHHcCCCeEEEEEEccccccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCccc
Confidence            666666667886 899999999983  344445556666665554421  36899999999999864

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=99.65  E-value=2.8e-16  Score=121.48  Aligned_cols=110  Identities=25%  Similarity=0.254  Sum_probs=81.5

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCCCc
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP  111 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~  111 (162)
                      .+.++|||||             .++..+..+..+.+|++++|+|+.++...++...+..+...++|+++|+||+|+...
T Consensus        74 ~inliDTPGh-------------~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~~ipiIvviNKiDl~~a  140 (600)
T 2ywe_A           74 KLHLIDTPGH-------------VDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQDLVIIPVINKIDLPSA  140 (600)
T ss_dssp             EEEEECCCCS-------------GGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHTTCEEEEEEECTTSTTC
T ss_pred             EEEEEECCCc-------------HhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHCCCCEEEEEeccCcccc
Confidence            5889999999             333334444456679999999999988888877777677789999999999999754


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293          112 IDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR  158 (162)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~  158 (162)
                      . .....+.+.+.+   +....+++++||++|.|+++++++|.+.++
T Consensus       141 ~-~~~v~~el~~~l---g~~~~~vi~vSAktg~GI~~Lle~I~~~lp  183 (600)
T 2ywe_A          141 D-VDRVKKQIEEVL---GLDPEEAILASAKEGIGIEEILEAIVNRIP  183 (600)
T ss_dssp             C-HHHHHHHHHHTS---CCCGGGCEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             C-HHHHHHHHHHhh---CCCcccEEEEEeecCCCchHHHHHHHHhcc
Confidence            3 223333333322   222236999999999999999999987664

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=99.65  E-value=1.8e-16  Score=103.70  Aligned_cols=113  Identities=16%  Similarity=0.154  Sum_probs=70.9

Q ss_pred             CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHHH-HHH---hCCceEEEEe
Q 031293           30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISL-MER---SQTKYQVVLT  104 (162)
Q Consensus        30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~~-l~~---~~~~~ivv~n  104 (162)
                      +.++.++||||+..          +......++   ..+|++++|+|+..+.+-.. ..++.. +..   .+.|+++|+|
T Consensus        43 ~~~~~i~Dt~G~~~----------~~~~~~~~~---~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~n  109 (164)
T 1r8s_A           43 NISFTVWDVGGQDK----------IRPLWRHYF---QNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFAN  109 (164)
T ss_dssp             SCEEEEEECCCCGG----------GHHHHHHHT---TTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEE
T ss_pred             CEEEEEEEcCCChh----------hHHHHHHHh---ccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEE
Confidence            45699999999822          233444443   45699999999976421111 122222 221   2689999999


Q ss_pred             ccCCCCcHHHHHHHHHHHHHHHh--cCCCCCCeEEeecCCCCCHHHHHHHHHHhhhh
Q 031293          105 KTDTVFPIDVARRAMQIEESLKA--NNSLVQPVMMVSSKSGAGIRSLRTVLSKIARF  159 (162)
Q Consensus       105 K~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~~  159 (162)
                      |+|+.+.....+    +.+.+..  ......+++++||++|.|+++++++|.+.+..
T Consensus       110 K~Dl~~~~~~~~----~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  162 (164)
T 1r8s_A          110 KQDLPNAMNAAE----ITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRN  162 (164)
T ss_dssp             CTTSTTCCCHHH----HHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHC--
T ss_pred             CcCCcCCCCHHH----HHHHhCcccccCccEEEEEcccCCCcCHHHHHHHHHHHHhh
Confidence            999975432222    2222211  11122479999999999999999999987654

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=99.65  E-value=1.2e-16  Score=105.00  Aligned_cols=140  Identities=11%  Similarity=0.040  Sum_probs=87.6

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEeC---CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKLG---TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT   77 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~~---~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~   77 (162)
                      |+|+|++........+.+|.+........+   .++.++||||+...          ......++.   .+|++++|+|+
T Consensus        22 li~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~----------~~~~~~~~~---~~~~~i~v~d~   88 (170)
T 1z0j_A           22 IMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERF----------RALAPMYYR---GSAAAIIVYDI   88 (170)
T ss_dssp             HHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGG----------GGGTHHHHT---TCSEEEEEEET
T ss_pred             HHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhh----------hcccHhhCc---CCCEEEEEEEC
Confidence            467777773334455666666554444443   35889999998221          223334433   35999999998


Q ss_pred             CCCCCccH-HHHHHHHHHh---CCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHH
Q 031293           78 KWGVKPRD-HELISLMERS---QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVL  153 (162)
Q Consensus        78 ~~~~~~~~-~~~~~~l~~~---~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i  153 (162)
                      ..+.+... ..++..+...   ..|+++|+||+|+.+......  +..+......+   .+++++||++|.|+++++++|
T Consensus        89 ~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~--~~~~~~~~~~~---~~~~~~Sa~~~~~i~~l~~~i  163 (170)
T 1z0j_A           89 TKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVME--RDAKDYADSIH---AIFVETSAKNAININELFIEI  163 (170)
T ss_dssp             TCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCH--HHHHHHHHHTT---CEEEECBTTTTBSHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCH--HHHHHHHHHcC---CEEEEEeCCCCcCHHHHHHHH
Confidence            76432222 2344444433   578999999999974322111  12222333333   489999999999999999999


Q ss_pred             HHhhh
Q 031293          154 SKIAR  158 (162)
Q Consensus       154 ~~~~~  158 (162)
                      .+.+.
T Consensus       164 ~~~i~  168 (170)
T 1z0j_A          164 SRRIP  168 (170)
T ss_dssp             HHHCC
T ss_pred             HHHHh
Confidence            87653

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=99.65  E-value=6.9e-17  Score=107.62  Aligned_cols=137  Identities=16%  Similarity=0.119  Sum_probs=85.1

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEeCCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCC
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG   80 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~   80 (162)
                      |+|+|++.. .....+..|.+.....+ -+.++.++||||+...          ......+   ...+|++++|+|+..+
T Consensus        37 li~~l~~~~-~~~~~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~~----------~~~~~~~---~~~~d~ii~v~D~~~~  101 (181)
T 2h17_A           37 ILYQFSMNE-VVHTSPTIGSNVEEIVI-NNTRFLMWDIGGQESL----------RSSWNTY---YTNTEFVIVVVDSTDR  101 (181)
T ss_dssp             HHHHHHTTS-CEEEECCSSSSCEEEEE-TTEEEEEEEESSSGGG----------TCGGGGG---GTTCCEEEEEEETTCT
T ss_pred             HHHHHhcCC-CCccCCcCceeeEEEEE-CCEEEEEEECCCCHhH----------HHHHHHH---hccCCEEEEEEECCCH
Confidence            578888773 46667777765432211 2456999999998321          2222233   3456999999999875


Q ss_pred             CCccH-HHHH-HHHH---HhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHh--cCCCCCCeEEeecCCCCCHHHHHHHH
Q 031293           81 VKPRD-HELI-SLME---RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKA--NNSLVQPVMMVSSKSGAGIRSLRTVL  153 (162)
Q Consensus        81 ~~~~~-~~~~-~~l~---~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~Sa~~~~g~~~l~~~i  153 (162)
                      .+-.. ..++ ..+.   ..++|+++|+||+|+.+.....+    +.+.+..  ......+++++||++|.|+++++++|
T Consensus       102 ~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~----i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l  177 (181)
T 2h17_A          102 ERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAE----ISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWM  177 (181)
T ss_dssp             TTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHH----HHHHTTGGGCCSSCEEEEECBTTTTBTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCCHHH----HHHHhCcccccCCceEEEEccCCCCcCHHHHHHHH
Confidence            32222 1223 3333   24689999999999975322222    2222211  11122479999999999999999998


Q ss_pred             HHh
Q 031293          154 SKI  156 (162)
Q Consensus       154 ~~~  156 (162)
                      .+.
T Consensus       178 ~~~  180 (181)
T 2h17_A          178 MSR  180 (181)
T ss_dssp             HTC
T ss_pred             Hhh
Confidence            754

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=99.65  E-value=4.5e-16  Score=104.61  Aligned_cols=138  Identities=13%  Similarity=0.092  Sum_probs=84.7

Q ss_pred             ChhcccCCCCceeccCCCCcceEEE--EEEeCC---ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEe
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTIN--FFKLGT---KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLI   75 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~--~~~~~~---~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vi   75 (162)
                      |+|+|++..  ......|+++.+..  .+..+.   .+.++||||+...          ......++.   .+|++++|+
T Consensus        32 li~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~~~~~~---~~d~~i~v~   96 (196)
T 3tkl_A           32 LLLRFADDT--YTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF----------RTITSSYYR---GAHGIIVVY   96 (196)
T ss_dssp             HHHHHHHSC--CCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGG----------CTTHHHHHT---TCSEEEEEE
T ss_pred             HHHHHHcCC--CCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhh----------hhhHHHHHh---hCCEEEEEE
Confidence            467777762  22344455554443  334432   5889999997322          223344443   459999999


Q ss_pred             ecCCCCCcc-HHHHHHHHHHh---CCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHH
Q 031293           76 DTKWGVKPR-DHELISLMERS---QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRT  151 (162)
Q Consensus        76 d~~~~~~~~-~~~~~~~l~~~---~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~  151 (162)
                      |+..+.+-. ...++..+...   ++|+++|+||+|+.+......  +..+......+   .+++++||++|.|+++++.
T Consensus        97 d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~--~~~~~~~~~~~---~~~~~~Sa~~g~gv~~l~~  171 (196)
T 3tkl_A           97 DVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDY--TTAKEFADSLG---IPFLETSAKNATNVEQSFM  171 (196)
T ss_dssp             ETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCH--HHHHHHHHHTT---CCEEEECTTTCTTHHHHHH
T ss_pred             ECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCH--HHHHHHHHHcC---CcEEEEeCCCCCCHHHHHH
Confidence            987632111 12233444333   689999999999975432211  12222333333   4899999999999999999


Q ss_pred             HHHHhhh
Q 031293          152 VLSKIAR  158 (162)
Q Consensus       152 ~i~~~~~  158 (162)
                      +|.+.+.
T Consensus       172 ~l~~~i~  178 (196)
T 3tkl_A          172 TMAAEIK  178 (196)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9987654

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=99.65  E-value=1.5e-16  Score=104.39  Aligned_cols=140  Identities=12%  Similarity=0.047  Sum_probs=83.9

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEeC---CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKLG---TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT   77 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~~---~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~   77 (162)
                      |+|+|++........+..|.+........+   .++.++||||+...          ......++   ..+|++++|+|+
T Consensus        22 li~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~----------~~~~~~~~---~~~d~~i~v~d~   88 (170)
T 1r2q_A           22 LVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERY----------HSLAPMYY---RGAQAAIVVYDI   88 (170)
T ss_dssp             HHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGG----------GGGHHHHH---TTCSEEEEEEET
T ss_pred             HHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHh----------hhhhHHhc---cCCCEEEEEEEC
Confidence            467777652222233445554444434432   35889999998321          22333443   345999999998


Q ss_pred             CCCCCccH-HHHHHHHHHh---CCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHH
Q 031293           78 KWGVKPRD-HELISLMERS---QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVL  153 (162)
Q Consensus        78 ~~~~~~~~-~~~~~~l~~~---~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i  153 (162)
                      ..+.+-.. ..++..+...   ++|+++|+||+|+.++....  .+...+.....+   .+++++||++|.|+++++++|
T Consensus        89 ~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~--~~~~~~~~~~~~---~~~~~~Sa~~g~gi~~l~~~i  163 (170)
T 1r2q_A           89 TNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVD--FQEAQSYADDNS---LLFMETSAKTSMNVNEIFMAI  163 (170)
T ss_dssp             TCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSC--HHHHHHHHHHTT---CEEEECCTTTCTTHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccC--HHHHHHHHHHcC---CeEEEEeCCCCCCHHHHHHHH
Confidence            76422111 2233333332   57899999999986432211  112223333333   489999999999999999999


Q ss_pred             HHhhh
Q 031293          154 SKIAR  158 (162)
Q Consensus       154 ~~~~~  158 (162)
                      .+.+.
T Consensus       164 ~~~~~  168 (170)
T 1r2q_A          164 AKKLP  168 (170)
T ss_dssp             HHTSC
T ss_pred             HHHHh
Confidence            87653

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=99.65  E-value=2.4e-16  Score=105.60  Aligned_cols=142  Identities=15%  Similarity=0.129  Sum_probs=82.3

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEe-CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCC
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKL-GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW   79 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~-~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~   79 (162)
                      |+|+|++........+..|.+  ...... +.++.++||||+          +.+......++   ..+|++++|+|+..
T Consensus        38 li~~l~~~~~~~~~~~t~~~~--~~~~~~~~~~~~l~Dt~G~----------~~~~~~~~~~~---~~~d~ii~v~D~~~  102 (188)
T 1zd9_A           38 FVNVIASGQFNEDMIPTVGFN--MRKITKGNVTIKLWDIGGQ----------PRFRSMWERYC---RGVSAIVYMVDAAD  102 (188)
T ss_dssp             HHHHHHHSCCCCSCCCCCSEE--EEEEEETTEEEEEEEECCS----------HHHHTTHHHHH---TTCSEEEEEEETTC
T ss_pred             HHHHHHcCCCCCccCCCCcee--EEEEEeCCEEEEEEECCCC----------HhHHHHHHHHH---ccCCEEEEEEECCC
Confidence            467777652222223333322  222222 446899999998          22333444444   44699999999876


Q ss_pred             CCCcc--HHHHHHHHHH---hCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHH
Q 031293           80 GVKPR--DHELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLS  154 (162)
Q Consensus        80 ~~~~~--~~~~~~~l~~---~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~  154 (162)
                      +.+-.  ..++...+..   .++|+++|+||+|+.......+..+.+.  .........+++++||++|.|+++++++|.
T Consensus       103 ~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~--~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~  180 (188)
T 1zd9_A          103 QEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMN--LSAIQDREICCYSISCKEKDNIDITLQWLI  180 (188)
T ss_dssp             GGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTT--GGGCCSSCEEEEECCTTTCTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCHHHHHHHhC--hhhhccCCeeEEEEECCCCCCHHHHHHHHH
Confidence            42111  1222233322   4689999999999975422222111111  111111234789999999999999999999


Q ss_pred             Hhhhh
Q 031293          155 KIARF  159 (162)
Q Consensus       155 ~~~~~  159 (162)
                      +.+..
T Consensus       181 ~~~~~  185 (188)
T 1zd9_A          181 QHSKS  185 (188)
T ss_dssp             HTCC-
T ss_pred             HHHHh
Confidence            87653

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=99.64  E-value=2.1e-15  Score=99.71  Aligned_cols=139  Identities=9%  Similarity=-0.012  Sum_probs=80.4

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEeCC---ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKLGT---KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT   77 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~~~---~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~   77 (162)
                      |+|+|++........+..|.+.....+..+.   .+.++||||+..          +......+   .+.+|++++|+|.
T Consensus        23 li~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~----------~~~~~~~~---~~~~~~~i~v~d~   89 (177)
T 1wms_A           23 LMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQER----------FRSLRTPF---YRGSDCCLLTFSV   89 (177)
T ss_dssp             HHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGG----------GHHHHGGG---GTTCSEEEEEEET
T ss_pred             HHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchh----------hhhhHHHH---HhcCCEEEEEEEC
Confidence            4677776622222223333332233334433   689999999822          12333333   3456999999998


Q ss_pred             CCCCCccH-HHHHHHHHH-------hCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHH
Q 031293           78 KWGVKPRD-HELISLMER-------SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSL  149 (162)
Q Consensus        78 ~~~~~~~~-~~~~~~l~~-------~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l  149 (162)
                      ..+.+-.. ..++..+..       .++|+++|+||+|+.......   +..++.....  ...+++++||++|.|++++
T Consensus        90 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~---~~~~~~~~~~--~~~~~~~~Sa~~~~gi~~l  164 (177)
T 1wms_A           90 DDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVST---EEAQAWCRDN--GDYPYFETSAKDATNVAAA  164 (177)
T ss_dssp             TCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCH---HHHHHHHHHT--TCCCEEECCTTTCTTHHHH
T ss_pred             cCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCH---HHHHHHHHhc--CCceEEEEeCCCCCCHHHH
Confidence            76432111 123333321       467999999999997322111   1222333322  2258999999999999999


Q ss_pred             HHHHHHhh
Q 031293          150 RTVLSKIA  157 (162)
Q Consensus       150 ~~~i~~~~  157 (162)
                      ++++.+.+
T Consensus       165 ~~~l~~~~  172 (177)
T 1wms_A          165 FEEAVRRV  172 (177)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998765

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=99.64  E-value=6.7e-17  Score=108.29  Aligned_cols=141  Identities=20%  Similarity=0.155  Sum_probs=83.5

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEe-CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCC
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKL-GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW   79 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~-~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~   79 (162)
                      |+|+|++. ......++.|.+.  ..... +.++.++||||+...          ......   ..+.+|++++|+|+..
T Consensus        38 li~~l~~~-~~~~~~~t~~~~~--~~~~~~~~~~~~~Dt~G~~~~----------~~~~~~---~~~~~d~ii~v~d~~~  101 (189)
T 2x77_A           38 ILYRLHLG-DVVTTVPTVGVNL--ETLQYKNISFEVWDLGGQTGV----------RPYWRC---YFSDTDAVIYVVDSTD  101 (189)
T ss_dssp             HHHHTCCS-CCEEECSSTTCCE--EEEEETTEEEEEEEECCSSSS----------CCCCSS---SSTTCCEEEEEEETTC
T ss_pred             HHHHHHcC-CCCCcCCCCceEE--EEEEECCEEEEEEECCCCHhH----------HHHHHH---HhhcCCEEEEEEeCCC
Confidence            46777666 2333344444322  12222 456899999998332          111112   2345799999999986


Q ss_pred             CCCcc--HHHHHHHHHH---hCCceEEEEeccCCCCcHHHHHHHHHHHHHHH--hcCCCCCCeEEeecCCCCCHHHHHHH
Q 031293           80 GVKPR--DHELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLK--ANNSLVQPVMMVSSKSGAGIRSLRTV  152 (162)
Q Consensus        80 ~~~~~--~~~~~~~l~~---~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~Sa~~~~g~~~l~~~  152 (162)
                      +.+-.  ..++...+..   .++|+++|+||+|+.+.....+    +.+.+.  .......+++++||++|.|+++++++
T Consensus       102 ~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~----~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  177 (189)
T 2x77_A          102 RDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAE----IAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDW  177 (189)
T ss_dssp             CTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHH----HHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHH----HHHHhChhhccCCceEEEEccCCCccCHHHHHHH
Confidence            53222  1222223322   3689999999999976432222    222221  11122247999999999999999999


Q ss_pred             HHHhhhhhc
Q 031293          153 LSKIARFAK  161 (162)
Q Consensus       153 i~~~~~~~k  161 (162)
                      |.+.+...+
T Consensus       178 l~~~i~~~~  186 (189)
T 2x77_A          178 LVERLREQG  186 (189)
T ss_dssp             HHHHHHHTC
T ss_pred             HHHHHHhcc
Confidence            998776443

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.64  E-value=2.2e-16  Score=103.63  Aligned_cols=139  Identities=12%  Similarity=0.060  Sum_probs=83.7

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEeCC---ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKLGT---KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT   77 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~~~---~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~   77 (162)
                      |+|+|++........+.+|.+.....+..+.   ++.++||||+...          ......++.   .+|++++|+|+
T Consensus        19 li~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~----------~~~~~~~~~---~~d~~i~v~d~   85 (170)
T 1ek0_A           19 IVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERF----------ASLAPXYYR---NAQAALVVYDV   85 (170)
T ss_dssp             HHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGG----------GGGHHHHHT---TCSEEEEEEET
T ss_pred             HHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhh----------hhhhhhhhc---cCcEEEEEEec
Confidence            4677776632223344455444444444433   5899999998321          233444443   45999999999


Q ss_pred             CCCCCccH-HHHHHHHHH---hCCceEEEEeccCCCCc---HHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHH
Q 031293           78 KWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFP---IDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLR  150 (162)
Q Consensus        78 ~~~~~~~~-~~~~~~l~~---~~~~~ivv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~  150 (162)
                      ..+.+-.. ..++..+..   .+.|+++|+||+|+.+.   .....  +..++.....+   .+++++||++|.|+++++
T Consensus        86 ~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~--~~~~~~~~~~~---~~~~~~Sa~~~~gi~~l~  160 (170)
T 1ek0_A           86 TKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAR--EEGEKLAEEKG---LLFFETSAKTGENVNDVF  160 (170)
T ss_dssp             TCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCH--HHHHHHHHHHT---CEEEECCTTTCTTHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCH--HHHHHHHHHcC---CEEEEEeCCCCCCHHHHH
Confidence            86422211 122333332   26889999999998743   11110  11222222232   489999999999999999


Q ss_pred             HHHHHhh
Q 031293          151 TVLSKIA  157 (162)
Q Consensus       151 ~~i~~~~  157 (162)
                      .+|.+.+
T Consensus       161 ~~l~~~i  167 (170)
T 1ek0_A          161 LGIGEKI  167 (170)
T ss_dssp             HHHHTTS
T ss_pred             HHHHHHH
Confidence            9998765

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=99.64  E-value=9.7e-16  Score=102.60  Aligned_cols=109  Identities=17%  Similarity=0.133  Sum_probs=70.8

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHHHHHH----hCCceEEEEecc
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKT  106 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~~l~~----~~~~~ivv~nK~  106 (162)
                      ++.++||||+..          +......+   .+.+|++++|+|+..+.+... ..++..+..    .++|+++|+||+
T Consensus        71 ~~~l~Dt~G~~~----------~~~~~~~~---~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~  137 (195)
T 3bc1_A           71 HLQLWDTAGLER----------FRSLTTAF---FRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKS  137 (195)
T ss_dssp             EEEEEEECCSGG----------GHHHHHHT---TTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECT
T ss_pred             EEEEEeCCCcHH----------HHHHHHHH---HcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECc
Confidence            589999999922          13333333   455699999999876432222 233343433    368999999999


Q ss_pred             CCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293          107 DTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR  158 (162)
Q Consensus       107 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~  158 (162)
                      |+.+.....  .+..++.....+   .+++++||++|.|+++++.+|.+.+.
T Consensus       138 Dl~~~~~~~--~~~~~~~~~~~~---~~~~~~Sa~~~~~v~~l~~~l~~~~~  184 (195)
T 3bc1_A          138 DLEDQRAVK--EEEARELAEKYG---IPYFETSAANGTNISHAIEMLLDLIM  184 (195)
T ss_dssp             TCGGGCCSC--HHHHHHHHHHHT---CCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             ccccccccC--HHHHHHHHHHcC---CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence            996432211  012223333333   48999999999999999999987653

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=99.64  E-value=2.3e-16  Score=104.56  Aligned_cols=138  Identities=11%  Similarity=0.069  Sum_probs=82.8

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEE--EEeC---CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEe
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINF--FKLG---TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLI   75 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~--~~~~---~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vi   75 (162)
                      |+|+|++.. .. ....|+.+.+...  +..+   ..+.++||||+...          ......+   ...+|++++|+
T Consensus        25 l~~~l~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~~~~---~~~~d~~i~v~   89 (181)
T 3tw8_B           25 LLLRFADNT-FS-GSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERF----------RTITSTY---YRGTHGVIVVY   89 (181)
T ss_dssp             HHHHHCSCC-----CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGC----------SSCCGGG---GTTCSEEEEEE
T ss_pred             HHHHHhcCC-CC-CccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhh----------hhhHHHH---hccCCEEEEEE
Confidence            578888772 22 4445555544433  3333   35889999997322          1112222   34569999999


Q ss_pred             ecCCCCCccH-HHHHHHHHHh--CCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHH
Q 031293           76 DTKWGVKPRD-HELISLMERS--QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTV  152 (162)
Q Consensus        76 d~~~~~~~~~-~~~~~~l~~~--~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~  152 (162)
                      |+..+.+... ..++..+...  ++|+++|+||+|+.+......  +.........+   .+++++||++|.|+++++++
T Consensus        90 d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~--~~~~~~~~~~~---~~~~~~Sa~~~~gi~~l~~~  164 (181)
T 3tw8_B           90 DVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPERKVVET--EDAYKFAGQMG---IQLFETSAKENVNVEEMFNC  164 (181)
T ss_dssp             ETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCGGGCCSCH--HHHHHHHHHHT---CCEEECBTTTTBSHHHHHHH
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCchhcccCH--HHHHHHHHHcC---CeEEEEECCCCCCHHHHHHH
Confidence            9976422211 1233333333  489999999999864332111  11222233333   48999999999999999999


Q ss_pred             HHHhhh
Q 031293          153 LSKIAR  158 (162)
Q Consensus       153 i~~~~~  158 (162)
                      |.+.+.
T Consensus       165 l~~~~~  170 (181)
T 3tw8_B          165 ITELVL  170 (181)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            988664

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=99.64  E-value=8e-16  Score=101.03  Aligned_cols=109  Identities=17%  Similarity=0.061  Sum_probs=67.8

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHHHHHH---hCCceEEEEeccC
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTD  107 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~~l~~---~~~~~ivv~nK~D  107 (162)
                      .+.++||||+             ..+........+.+|++++|+|+..+.+-.. ..++..+..   .++|+++|+||+|
T Consensus        56 ~l~i~Dt~G~-------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D  122 (170)
T 1z08_A           56 NLAIWDTAGQ-------------ERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKID  122 (170)
T ss_dssp             EEEEEECCCC--------------------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGG
T ss_pred             EEEEEECCCc-------------HhhhhhHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcc
Confidence            4789999998             2222222223456799999999876422111 123333332   4689999999999


Q ss_pred             CCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293          108 TVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR  158 (162)
Q Consensus       108 l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~  158 (162)
                      +.+.....  .+..++.....+   .+++++||++|.|+++++++|.+.+.
T Consensus       123 l~~~~~~~--~~~~~~~~~~~~---~~~~~~Sa~~~~gi~~l~~~l~~~~~  168 (170)
T 1z08_A          123 LEKERHVS--IQEAESYAESVG---AKHYHTSAKQNKGIEELFLDLCKRMI  168 (170)
T ss_dssp             GGGGCCSC--HHHHHHHHHHTT---CEEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             cccccccC--HHHHHHHHHHcC---CeEEEecCCCCCCHHHHHHHHHHHHh
Confidence            97432211  112233333333   48999999999999999999987653

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=99.64  E-value=9.4e-17  Score=114.89  Aligned_cols=124  Identities=16%  Similarity=0.136  Sum_probs=80.6

Q ss_pred             CceEEEcCCCCccccc---CHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHH-HHHHHHHHhCCceEEEEecc
Q 031293           31 TKLCLVDLPGYGFAYA---KEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDH-ELISLMERSQTKYQVVLTKT  106 (162)
Q Consensus        31 ~~~~ivDtpG~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~-~~~~~l~~~~~~~ivv~nK~  106 (162)
                      .++.+|||||++....   +......+...+..|+....  +++++|+|+..++...+. .++..+...+.|+++|+||+
T Consensus       125 ~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~il~v~d~~~~~~~~~~~~~~~~~~~~~~~~i~V~NK~  202 (299)
T 2aka_B          125 LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKEN--CLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKL  202 (299)
T ss_dssp             CSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTT--EEEEEEEESSSCGGGCHHHHHHHHHCTTCSSEEEEEECG
T ss_pred             CCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCC--eEEEEEecCCcchhhhHHHHHHHHhCCCCCeEEEEEEcc
Confidence            5799999999975432   23333345666777766431  355579999887766664 46666666689999999999


Q ss_pred             CCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293          107 DTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR  158 (162)
Q Consensus       107 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~  158 (162)
                      |+.+....  ..+.++..+........+++++||++|.|+++++++|.+..+
T Consensus       203 Dl~~~~~~--~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~~~  252 (299)
T 2aka_B          203 DLMDEGTD--ARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAERK  252 (299)
T ss_dssp             GGSCTTCC--CHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHHHH
T ss_pred             ccCCCCch--HHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHHHH
Confidence            99854321  011121111011011247889999999999999999887544

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.63  E-value=5.6e-15  Score=106.33  Aligned_cols=140  Identities=14%  Similarity=0.070  Sum_probs=90.7

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEe----CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhc-----Cccccee
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKL----GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVST-----RVSLKRV   71 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~----~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~v   71 (162)
                      |+|+|++. ....++..+|+|.+..+...    +.++.+|||||+             ..+...+...     .+.+|++
T Consensus        19 Li~~l~~~-~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~-------------~~~~~~~~~~~~~~~~~~ad~v   84 (307)
T 3r7w_A           19 MRSIIFSN-YSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQ-------------DVFMENYFTKQKDHIFQMVQVL   84 (307)
T ss_dssp             HHHHHHSC-CCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCS-------------HHHHHHHHTTTHHHHHTTCSEE
T ss_pred             HHHHHHhC-CCCccccCcCCccceEEEEEEeCCceEEEEEECCCc-------------HHHhhhhhhhHHHHHhccCCEE
Confidence            47787777 34567778999987776543    235899999998             3332222211     1356999


Q ss_pred             EEEeecCCCCCccHHH-HHHHHHH-----hCCceEEEEeccCCCCcHHHH----HHHHHHHHHHHhcCCCCCCeEEeecC
Q 031293           72 CLLIDTKWGVKPRDHE-LISLMER-----SQTKYQVVLTKTDTVFPIDVA----RRAMQIEESLKANNSLVQPVMMVSSK  141 (162)
Q Consensus        72 i~vid~~~~~~~~~~~-~~~~l~~-----~~~~~ivv~nK~Dl~~~~~~~----~~~~~~~~~~~~~~~~~~~i~~~Sa~  141 (162)
                      ++|+|+..+.+-.+.. +..++..     .++|+++|+||+|+.+.....    ...+.+++.....+....+++++||+
T Consensus        85 i~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~~~tSa~  164 (307)
T 3r7w_A           85 IHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPTSIW  164 (307)
T ss_dssp             EEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEEEECCTT
T ss_pred             EEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEEEEeeec
Confidence            9999998754333332 2233322     278999999999998643332    22344555555554223689999999


Q ss_pred             CCCCHHHHHHHHHH
Q 031293          142 SGAGIRSLRTVLSK  155 (162)
Q Consensus       142 ~~~g~~~l~~~i~~  155 (162)
                      + .|+.+++..+.+
T Consensus       165 ~-~~i~e~~~~iv~  177 (307)
T 3r7w_A          165 D-ESLYKAWSQIVC  177 (307)
T ss_dssp             S-SHHHHHHHHHHH
T ss_pred             C-ChHHHHHHHHHH
Confidence            9 788887777654

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=99.63  E-value=3.5e-16  Score=102.69  Aligned_cols=137  Identities=15%  Similarity=0.133  Sum_probs=78.9

Q ss_pred             ChhcccCCCCceeccCCCCcceEEE--EEEeCC---ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEe
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTIN--FFKLGT---KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLI   75 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~--~~~~~~---~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vi   75 (162)
                      |+|+|++.. . .....|+.+.+..  ....+.   ++.++||||+...          ......++   ..+|++++|+
T Consensus        19 li~~l~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~----------~~~~~~~~---~~~d~~i~v~   83 (170)
T 1g16_A           19 LLVRFVEDK-F-NPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERF----------RTITTAYY---RGAMGIILVY   83 (170)
T ss_dssp             HHHHHHHCC-C-CC-------CCEEEEEEESSSCEEEEEEECCTTGGGT----------SCCCHHHH---TTEEEEEEEE
T ss_pred             HHHHHHhCC-C-CCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhh----------hhhHHHHh---ccCCEEEEEE
Confidence            467777662 2 2233343333332  333332   5889999998332          11223333   3459999999


Q ss_pred             ecCCCCCccH-HHHHHHHHH---hCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHH
Q 031293           76 DTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRT  151 (162)
Q Consensus        76 d~~~~~~~~~-~~~~~~l~~---~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~  151 (162)
                      |+..+.+-.. ..++..+..   .+.|+++|+||+|+.......+   ..++.....+   .+++++||++|.|+++++.
T Consensus        84 d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~---~~~~~~~~~~---~~~~~~Sa~~~~gv~~l~~  157 (170)
T 1g16_A           84 DITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTAD---QGEALAKELG---IPFIESSAKNDDNVNEIFF  157 (170)
T ss_dssp             ETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCCSCHH---HHHHHHHHHT---CCEEECBTTTTBSHHHHHH
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCCcCccCHH---HHHHHHHHcC---CeEEEEECCCCCCHHHHHH
Confidence            9876422111 233344433   2689999999999953222112   1222223233   4899999999999999999


Q ss_pred             HHHHhhh
Q 031293          152 VLSKIAR  158 (162)
Q Consensus       152 ~i~~~~~  158 (162)
                      +|.+.+.
T Consensus       158 ~l~~~~~  164 (170)
T 1g16_A          158 TLAKLIQ  164 (170)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9988664

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=99.63  E-value=1.3e-15  Score=107.01  Aligned_cols=154  Identities=12%  Similarity=0.076  Sum_probs=94.2

Q ss_pred             ChhcccCCCCceeccCCCC-cceEEEE--EEe-CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEee
Q 031293            1 MLNALTRQWGVVRTSDKPG-LTQTINF--FKL-GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLID   76 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g-~t~~~~~--~~~-~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid   76 (162)
                      |+|+|++. ....++..|+ +|+....  ... +.++.+|||||+........  .....+...+....+.+|++++|+|
T Consensus        38 l~n~l~~~-~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~--~~~~~i~~~~~~~~~~~d~il~V~d  114 (260)
T 2xtp_A           38 AGNSILRK-QAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCE--ALYKEVQRCYLLSAPGPHVLLLVTQ  114 (260)
T ss_dssp             HHHHHHTS-CCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCH--HHHHHHHHHHHHHTTCCSEEEEEEE
T ss_pred             HHHHHhCC-CCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHH--HHHHHHHHHHHhcCCCCcEEEEEEe
Confidence            57888887 3455555555 5654432  233 55799999999966533221  1111222333334566799999999


Q ss_pred             cCCCCCccHHHHHHHHHHh-----CCceEEEEe-ccCCCCcHHHHHHH-----HHHHHHHHhcCCCC--CCeEEeecCCC
Q 031293           77 TKWGVKPRDHELISLMERS-----QTKYQVVLT-KTDTVFPIDVARRA-----MQIEESLKANNSLV--QPVMMVSSKSG  143 (162)
Q Consensus        77 ~~~~~~~~~~~~~~~l~~~-----~~~~ivv~n-K~Dl~~~~~~~~~~-----~~~~~~~~~~~~~~--~~i~~~Sa~~~  143 (162)
                      +.. +...+..++..+...     ..|.++++| |+|+.+.. ....+     +.+++.+...+...  +..+++||++|
T Consensus       115 ~~~-~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~  192 (260)
T 2xtp_A          115 LGR-YTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGS-LMDYMHDSDNKALSKLVAACGGRICAFNNRAEGSNQD  192 (260)
T ss_dssp             TTC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCC-HHHHHHHCCCHHHHHHHHHTTTCEEECCTTCCHHHHH
T ss_pred             CCC-CCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCcc-HHHHHHhcchHHHHHHHHHhCCeEEEecCcccccccH
Confidence            985 666666666666654     568877787 99998543 22211     11222333332211  22278999999


Q ss_pred             CCHHHHHHHHHHhhhh
Q 031293          144 AGIRSLRTVLSKIARF  159 (162)
Q Consensus       144 ~g~~~l~~~i~~~~~~  159 (162)
                      .|+++++.+|.+.+..
T Consensus       193 ~gv~~l~~~i~~~~~~  208 (260)
T 2xtp_A          193 DQVKELMDCIEDLLME  208 (260)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9999999999887653

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=99.63  E-value=2.4e-16  Score=105.64  Aligned_cols=140  Identities=11%  Similarity=0.002  Sum_probs=84.2

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEeC---CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKLG---TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT   77 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~~---~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~   77 (162)
                      |+|+|++........+..|.+........+   .++.++||||+...          ......+   ...+|++++|+|+
T Consensus        38 li~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----------~~~~~~~---~~~~d~ii~v~d~  104 (189)
T 2gf9_A           38 FLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERY----------RTITTAY---YRGAMGFLLMYDI  104 (189)
T ss_dssp             HHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSS----------CCSGGGG---GTTCSEEEEEEET
T ss_pred             HHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHH----------hhhHHHh---ccCCCEEEEEEEC
Confidence            467777763222234444554443333332   35899999997332          1112222   3456999999998


Q ss_pred             CCCCCccH-HHHHHHHHHh---CCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHH
Q 031293           78 KWGVKPRD-HELISLMERS---QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVL  153 (162)
Q Consensus        78 ~~~~~~~~-~~~~~~l~~~---~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i  153 (162)
                      ..+.+-.. ..++..+...   ++|+++|+||+|+.+......  +..++.....+   .+++++||++|.|+++++++|
T Consensus       105 ~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~--~~~~~~~~~~~---~~~~~~Sa~~g~gi~~l~~~l  179 (189)
T 2gf9_A          105 ANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPA--EDGRRLADDLG---FEFFEASAKENINVKQVFERL  179 (189)
T ss_dssp             TCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCH--HHHHHHHHHHT---CEEEECBTTTTBSHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCH--HHHHHHHHHcC---CeEEEEECCCCCCHHHHHHHH
Confidence            76421111 2344444443   689999999999974322110  12222333333   489999999999999999999


Q ss_pred             HHhhh
Q 031293          154 SKIAR  158 (162)
Q Consensus       154 ~~~~~  158 (162)
                      .+.+.
T Consensus       180 ~~~i~  184 (189)
T 2gf9_A          180 VDVIC  184 (189)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            87653

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=99.63  E-value=1.9e-16  Score=106.50  Aligned_cols=112  Identities=13%  Similarity=-0.040  Sum_probs=70.7

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH--HHHHHHHHHh--CCceEEEEeccC
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMERS--QTKYQVVLTKTD  107 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~--~~~~~~l~~~--~~~~ivv~nK~D  107 (162)
                      .+.++||||+...          ......   ..+.+|++++|+|+..+.+-..  ..++..+...  ++|+++|+||+|
T Consensus        72 ~~~i~Dt~G~~~~----------~~~~~~---~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D  138 (194)
T 3reg_A           72 ILHLWDTAGQEEY----------DRLRPL---SYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVD  138 (194)
T ss_dssp             EEEEEEECCSGGG----------TTTGGG---GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGG
T ss_pred             EEEEEECCCcHHH----------HHHhHh---hccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChh
Confidence            3689999998221          112222   2345699999999876432222  2244444443  689999999999


Q ss_pred             CCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293          108 TVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR  158 (162)
Q Consensus       108 l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~  158 (162)
                      +.+........+...+.....+.  .+++++||++|.|+++++++|.+.+.
T Consensus       139 l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l~~~i~  187 (194)
T 3reg_A          139 LRKDGSDDVTKQEGDDLCQKLGC--VAYIEASSVAKIGLNEVFEKSVDCIF  187 (194)
T ss_dssp             GCCTTTTCCCHHHHHHHHHHHTC--SCEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred             hccCCCCcccHHHHHHHHHhcCC--CEEEEeecCCCCCHHHHHHHHHHHHH
Confidence            97431111111223333333332  34999999999999999999988764

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=99.63  E-value=4.6e-16  Score=119.06  Aligned_cols=81  Identities=22%  Similarity=0.362  Sum_probs=62.4

Q ss_pred             CCcceEEEE--EEe-CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHH
Q 031293           18 PGLTQTINF--FKL-GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMER   94 (162)
Q Consensus        18 ~g~t~~~~~--~~~-~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~   94 (162)
                      +|+|.....  +.. +.++.+|||||+             .++...+.+..+.+|++++|+|+..+....+..++..+..
T Consensus        66 ~GiTi~~~~~~~~~~~~~i~liDTPG~-------------~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~  132 (528)
T 3tr5_A           66 RGISVTTSVMQFPYKDYLINLLDTPGH-------------ADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRL  132 (528)
T ss_dssp             HCCSSSSSEEEEEETTEEEEEECCCCS-------------TTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHT
T ss_pred             CCeeEEEeEEEEEeCCEEEEEEECCCc-------------hhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            555543332  222 556999999999             3344455556667899999999999988888888888888


Q ss_pred             hCCceEEEEeccCCCCc
Q 031293           95 SQTKYQVVLTKTDTVFP  111 (162)
Q Consensus        95 ~~~~~ivv~nK~Dl~~~  111 (162)
                      .++|+++|+||+|+...
T Consensus       133 ~~iPiivviNK~Dl~~~  149 (528)
T 3tr5_A          133 RHTPIMTFINKMDRDTR  149 (528)
T ss_dssp             TTCCEEEEEECTTSCCS
T ss_pred             cCCCEEEEEeCCCCccc
Confidence            89999999999999743

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=99.63  E-value=3.8e-18  Score=129.39  Aligned_cols=140  Identities=21%  Similarity=0.256  Sum_probs=95.0

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT   77 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~   77 (162)
                      |+|+|.+.  ....+..+|+|.++..+.+   +.+++++|||||             ..+.....++...+|++++|+|+
T Consensus        20 Ll~~L~~~--~v~~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGh-------------e~f~~~~~~~~~~aD~aILVVda   84 (501)
T 1zo1_I           20 LLEYIRST--KVASGEAGGITQHIGAYHVETENGMITFLDTPGH-------------AAFTSMRARGAQATDIVVLVVAA   84 (501)
T ss_dssp             HHHHHHHH--HHSBTTBCCCCCCSSCCCCCTTSSCCCEECCCTT-------------TCCTTSBCSSSBSCSSEEEEEET
T ss_pred             HHHHHHcC--CCccccCCCeeEeEEEEEEEECCEEEEEEECCCc-------------HHHHHHHHHHHhhCCEEEEEeec
Confidence            35566554  1223445788877665444   456999999999             33444445566778999999999


Q ss_pred             CCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHH--HHHhcCCCCCCeEEeecCCCCCHHHHHHHHHH
Q 031293           78 KWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEE--SLKANNSLVQPVMMVSSKSGAGIRSLRTVLSK  155 (162)
Q Consensus        78 ~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~  155 (162)
                      .++...++.+++..+...++|+++++||+|+.+... .+..+.+.+  .+........+++++||++|.|+++++++|..
T Consensus        85 ~~g~~~qT~e~l~~~~~~~vPiIVviNKiDl~~~~~-~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI~eLle~I~~  163 (501)
T 1zo1_I           85 DDGVMPQTIEAIQHAKAAQVPVVVAVNKIDKPEADP-DRVKNELSQYGILPEEWGGESQFVHVSAKAGTGIDELLDAILL  163 (501)
T ss_dssp             TTBSCTTTHHHHHHHHHTTCCEEEEEECSSSSTTCC-CCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTTCTTHHHHTTT
T ss_pred             ccCccHHHHHHHHHHHhcCceEEEEEEeccccccCH-HHHHHHHHHhhhhHHHhCCCccEEEEeeeeccCcchhhhhhhh
Confidence            998888888888888888999999999999974211 000000000  00001111258999999999999999999865


Q ss_pred             h
Q 031293          156 I  156 (162)
Q Consensus       156 ~  156 (162)
                      .
T Consensus       164 ~  164 (501)
T 1zo1_I          164 Q  164 (501)
T ss_dssp             T
T ss_pred             h
Confidence            3

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.63  E-value=6.1e-16  Score=105.30  Aligned_cols=137  Identities=15%  Similarity=0.120  Sum_probs=81.6

Q ss_pred             ChhcccCCCCceeccCCCCcceEE--EEEEeCC---ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEe
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTI--NFFKLGT---KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLI   75 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~--~~~~~~~---~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vi   75 (162)
                      |+|+|++...  .....|+.+.+.  ..+..+.   ++.++||||+...          ......++   ..+|++++|+
T Consensus        36 li~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----------~~~~~~~~---~~~d~ii~v~  100 (213)
T 3cph_A           36 LLVRFVEDKF--NPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERF----------RTITTAYY---RGAMGIILVY  100 (213)
T ss_dssp             HHHHHHHCCC--CCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGG----------TCCCHHHH---TTCSEEEEEE
T ss_pred             HHHHHHhCCC--CcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHH----------HHHHHHHh---ccCCEEEEEE
Confidence            4677776622  223334444333  3334433   5899999998322          22233333   3459999999


Q ss_pred             ecCCCCCccH-HHHHHHHHHh---CCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHH
Q 031293           76 DTKWGVKPRD-HELISLMERS---QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRT  151 (162)
Q Consensus        76 d~~~~~~~~~-~~~~~~l~~~---~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~  151 (162)
                      |+..+.+-.. ..++..+...   ++|+++|+||+|+.........   ..+.....+   .+++++||++|.|+++++.
T Consensus       101 d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~---~~~~~~~~~---~~~~~~Sa~~~~gi~~l~~  174 (213)
T 3cph_A          101 DVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQ---GEALAKELG---IPFIESSAKNDDNVNEIFF  174 (213)
T ss_dssp             ETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCSSCCSCHHH---HHHHHHHHT---CCEEECBTTTTBSSHHHHH
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccccCHHH---HHHHHHHcC---CEEEEEeCCCCCCHHHHHH
Confidence            9876421111 2333444332   6899999999999533221111   222222232   4899999999999999999


Q ss_pred             HHHHhhh
Q 031293          152 VLSKIAR  158 (162)
Q Consensus       152 ~i~~~~~  158 (162)
                      +|.+.+.
T Consensus       175 ~l~~~~~  181 (213)
T 3cph_A          175 TLAKLIQ  181 (213)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9987653

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=99.63  E-value=1.9e-16  Score=108.33  Aligned_cols=140  Identities=14%  Similarity=0.092  Sum_probs=84.9

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEe-C---CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEee
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKL-G---TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLID   76 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~-~---~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid   76 (162)
                      |+|+|++...........+.+.....+.. +   ..+.++||||+...          ......++   ..+|++++|+|
T Consensus        27 li~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----------~~~~~~~~---~~~d~~i~v~d   93 (218)
T 4djt_A           27 YINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKK----------AVLKDVYY---IGASGAILFFD   93 (218)
T ss_dssp             HHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGT----------SCCCHHHH---TTCSEEEEEEE
T ss_pred             HHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhh----------chHHHHHh---hcCCEEEEEEe
Confidence            57888866444445556665544433333 2   34899999998332          11222333   23599999999


Q ss_pred             cCCCCCccHH-HHHHHHHH---hCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHH
Q 031293           77 TKWGVKPRDH-ELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTV  152 (162)
Q Consensus        77 ~~~~~~~~~~-~~~~~l~~---~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~  152 (162)
                      +..+.+..+. .++..+..   .++|+++|+||+|+.+......  +.........   ..+++++||++|.|+++++.+
T Consensus        94 ~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~--~~~~~~~~~~---~~~~~~~Sa~~g~gv~~l~~~  168 (218)
T 4djt_A           94 VTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISK--KLVMEVLKGK---NYEYFEISAKTAHNFGLPFLH  168 (218)
T ss_dssp             TTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCH--HHHHHHTTTC---CCEEEEEBTTTTBTTTHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCH--HHHHHHHHHc---CCcEEEEecCCCCCHHHHHHH
Confidence            9864322222 23333332   2589999999999975433221  1222233322   258999999999999999999


Q ss_pred             HHHhhh
Q 031293          153 LSKIAR  158 (162)
Q Consensus       153 i~~~~~  158 (162)
                      |.+.+.
T Consensus       169 l~~~~~  174 (218)
T 4djt_A          169 LARIFT  174 (218)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            988664

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=99.63  E-value=1.8e-16  Score=107.17  Aligned_cols=137  Identities=17%  Similarity=0.160  Sum_probs=78.3

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEe-CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCC
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKL-GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW   79 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~-~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~   79 (162)
                      |+|+|++. ......++.+.+..  .... +.++.++||||+...          ......++   +.+|++++|+|+..
T Consensus        41 Li~~l~~~-~~~~~~~t~~~~~~--~~~~~~~~l~i~Dt~G~~~~----------~~~~~~~~---~~~d~~i~v~D~~~  104 (198)
T 1f6b_A           41 LLHMLKDD-RLGQHVPTLHPTSE--ELTIAGMTFTTFDLGGHIQA----------RRVWKNYL---PAINGIVFLVDCAD  104 (198)
T ss_dssp             HHHHHSCC-------CCCCCSCE--EEEETTEEEEEEEECC--------------CCGGGGGG---GGCSEEEEEEETTC
T ss_pred             HHHHHhcC-CCCccCCCCCceeE--EEEECCEEEEEEECCCcHhh----------HHHHHHHH---hcCCEEEEEEECCC
Confidence            46777776 34444555555432  2333 346899999998221          22222333   35699999999976


Q ss_pred             CCCccH-HHHHH-HHH---HhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcC--------------CCCCCeEEeec
Q 031293           80 GVKPRD-HELIS-LME---RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANN--------------SLVQPVMMVSS  140 (162)
Q Consensus        80 ~~~~~~-~~~~~-~l~---~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~--------------~~~~~i~~~Sa  140 (162)
                      +.+-.. ..++. .+.   ..++|+++|+||+|+......+    .+++.+....              ....+++++||
T Consensus       105 ~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA  180 (198)
T 1f6b_A          105 HERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEE----RLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSV  180 (198)
T ss_dssp             GGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHH----HHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBT
T ss_pred             HHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccccCCHH----HHHHHhCcccccccccccccccccCceEEEEEEEC
Confidence            421111 12222 222   1368999999999997422122    2333333211              12357999999


Q ss_pred             CCCCCHHHHHHHHHHhh
Q 031293          141 KSGAGIRSLRTVLSKIA  157 (162)
Q Consensus       141 ~~~~g~~~l~~~i~~~~  157 (162)
                      ++|.|+++++++|.+.+
T Consensus       181 ~~g~gv~~l~~~l~~~l  197 (198)
T 1f6b_A          181 LKRQGYGEGFRWMAQYI  197 (198)
T ss_dssp             TTTBSHHHHHHHHHTTC
T ss_pred             CCCCCHHHHHHHHHHhc
Confidence            99999999999998654

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=99.62  E-value=2.2e-15  Score=100.53  Aligned_cols=136  Identities=14%  Similarity=0.127  Sum_probs=81.3

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEE--EEeCC---ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEe
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINF--FKLGT---KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLI   75 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~--~~~~~---~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vi   75 (162)
                      |+|+|++..   .....++++.+...  ...+.   .+.++||||+..          +......++..   +|++++|+
T Consensus        20 li~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~----------~~~~~~~~~~~---~~~~i~v~   83 (189)
T 4dsu_A           20 LTIQLIQNH---FVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEE----------YSAMRDQYMRT---GEGFLCVF   83 (189)
T ss_dssp             HHHHHHHSS---CCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC-------------CTTHHHHHHH---CSEEEEEE
T ss_pred             HHHHHHhCC---CCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHH----------HHHHHHHHHhc---CCEEEEEE
Confidence            467787662   23444444443322  22222   377899999822          22334444433   49999999


Q ss_pred             ecCCCCCccH-HHHHHHHHH----hCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHH
Q 031293           76 DTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLR  150 (162)
Q Consensus        76 d~~~~~~~~~-~~~~~~l~~----~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~  150 (162)
                      |...+.+-.. ..++..+..    .+.|+++|+||+|+.+.....+..+.+.   ...+   .+++++||++|.|+++++
T Consensus        84 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~---~~~~---~~~~~~Sa~~g~gi~~l~  157 (189)
T 4dsu_A           84 AINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLA---RSYG---IPFIETSAKTRQGVDDAF  157 (189)
T ss_dssp             ETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHH---HHHT---CCEEECCTTTCTTHHHHH
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHH---HHcC---CeEEEEeCCCCCCHHHHH
Confidence            9876321111 122233322    3689999999999975433222222332   2232   489999999999999999


Q ss_pred             HHHHHhhh
Q 031293          151 TVLSKIAR  158 (162)
Q Consensus       151 ~~i~~~~~  158 (162)
                      .+|.+.+.
T Consensus       158 ~~l~~~~~  165 (189)
T 4dsu_A          158 YTLVREIR  165 (189)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99988664

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=99.62  E-value=3.1e-16  Score=105.26  Aligned_cols=139  Identities=14%  Similarity=0.075  Sum_probs=80.9

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEeCC---ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKLGT---KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT   77 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~~~---~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~   77 (162)
                      |+|+|++........+..|.+.....+..+.   ++.++||||+...          ......++.   .+|++++|+|+
T Consensus        37 li~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~~~~~~---~~d~ii~v~d~  103 (191)
T 2a5j_A           37 LLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESF----------RSITRSYYR---GAAGALLVYDI  103 (191)
T ss_dssp             HHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGT----------SCCCHHHHT---TCSEEEEEEET
T ss_pred             HHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhh----------hhhHHHHhc---cCCEEEEEEEC
Confidence            4677776622122223334444444444433   5899999998322          122333433   45999999998


Q ss_pred             CCCCCccH-HHHHHHHHHh---CCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHH
Q 031293           78 KWGVKPRD-HELISLMERS---QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVL  153 (162)
Q Consensus        78 ~~~~~~~~-~~~~~~l~~~---~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i  153 (162)
                      ..+.+-.. ..++..+...   ++|+++|+||+|+.+......  +..++.....+   .+++++||++|.|+++++.+|
T Consensus       104 ~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~--~~~~~~~~~~~---~~~~~~Sa~~~~gi~~l~~~l  178 (191)
T 2a5j_A          104 TRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKR--EEGEAFAREHG---LIFMETSAKTACNVEEAFINT  178 (191)
T ss_dssp             TCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCH--HHHHHHHHHHT---CEEEEECTTTCTTHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCH--HHHHHHHHHcC---CEEEEEeCCCCCCHHHHHHHH
Confidence            76321111 2233444332   689999999999964222110  12222333333   489999999999999999999


Q ss_pred             HHhh
Q 031293          154 SKIA  157 (162)
Q Consensus       154 ~~~~  157 (162)
                      .+.+
T Consensus       179 ~~~i  182 (191)
T 2a5j_A          179 AKEI  182 (191)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8755

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=99.62  E-value=1.4e-15  Score=100.81  Aligned_cols=142  Identities=11%  Similarity=0.035  Sum_probs=76.4

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEeC----CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEee
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKLG----TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLID   76 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~~----~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid   76 (162)
                      |+|+|++........+..|.+.....+..+    ..+.++||||+             ..+........+.+|++++|+|
T Consensus        24 li~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~-------------~~~~~~~~~~~~~~d~~i~v~d   90 (182)
T 1ky3_A           24 LMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQ-------------ERFQSLGVAFYRGADCCVLVYD   90 (182)
T ss_dssp             HHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC-----------------------CCSTTCCEEEEEEE
T ss_pred             HHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCC-------------hHhhhhhHHHhhcCCEEEEEEE
Confidence            467777662212222233333333333332    25899999997             2222222233456799999999


Q ss_pred             cCCCCCccH-HHHHHHHHH-------hCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHH
Q 031293           77 TKWGVKPRD-HELISLMER-------SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRS  148 (162)
Q Consensus        77 ~~~~~~~~~-~~~~~~l~~-------~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~  148 (162)
                      +..+.+-.. ..++..+..       .++|+++|+||+|+...... ...+...+.....  ...+++++||++|.|+++
T Consensus        91 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~-v~~~~~~~~~~~~--~~~~~~~~Sa~~~~gi~~  167 (182)
T 1ky3_A           91 VTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKI-VSEKSAQELAKSL--GDIPLFLTSAKNAINVDT  167 (182)
T ss_dssp             TTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCC-SCHHHHHHHHHHT--TSCCEEEEBTTTTBSHHH
T ss_pred             CCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCcccccccc-CCHHHHHHHHHhc--CCCeEEEEecCCCCCHHH
Confidence            876422111 122333221       46899999999999633210 0011222222212  225899999999999999


Q ss_pred             HHHHHHHhhh
Q 031293          149 LRTVLSKIAR  158 (162)
Q Consensus       149 l~~~i~~~~~  158 (162)
                      ++.+|.+.+.
T Consensus       168 l~~~l~~~~~  177 (182)
T 1ky3_A          168 AFEEIARSAL  177 (182)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999987653

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=99.62  E-value=8.4e-16  Score=103.83  Aligned_cols=142  Identities=18%  Similarity=0.114  Sum_probs=79.6

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEeC---CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKLG---TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT   77 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~~---~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~   77 (162)
                      |+|+|++........+..|.+........+   ..+.++||||+...          ......++.   .+|++++|+|+
T Consensus        44 li~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~----------~~~~~~~~~---~~d~iilv~d~  110 (199)
T 2p5s_A           44 FLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERF----------RSIAKSYFR---KADGVLLLYDV  110 (199)
T ss_dssp             HHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTC----------HHHHHHHHH---HCSEEEEEEET
T ss_pred             HHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcch----------hhhHHHHHh---hCCEEEEEEEC
Confidence            467777663233445555655444444443   24889999998322          333444443   35999999998


Q ss_pred             CCCCCccH-HHHHHHHHH---hCCceEEEEeccCCCCcHHHH---H-HHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHH
Q 031293           78 KWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVA---R-RAMQIEESLKANNSLVQPVMMVSSKSGAGIRSL  149 (162)
Q Consensus        78 ~~~~~~~~-~~~~~~l~~---~~~~~ivv~nK~Dl~~~~~~~---~-~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l  149 (162)
                      ..+.+... ..++..+..   .++|+++|+||+|+.+.....   . ..+..++.....+   .+++++||++|.|++++
T Consensus       111 ~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~---~~~~~~SA~~g~gv~el  187 (199)
T 2p5s_A          111 TCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYG---ALFCETSAKDGSNIVEA  187 (199)
T ss_dssp             TCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHT---CEEEECCTTTCTTHHHH
T ss_pred             CChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcC---CeEEEeeCCCCCCHHHH
Confidence            76432222 223344443   268999999999985211100   0 0112222233232   48999999999999999


Q ss_pred             HHHHHHhhh
Q 031293          150 RTVLSKIAR  158 (162)
Q Consensus       150 ~~~i~~~~~  158 (162)
                      +.+|.+.+.
T Consensus       188 ~~~l~~~i~  196 (199)
T 2p5s_A          188 VLHLAREVK  196 (199)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHH
Confidence            999988664

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.62  E-value=1.2e-15  Score=103.52  Aligned_cols=108  Identities=20%  Similarity=0.132  Sum_probs=68.6

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHHHHHH---hCCceEEEEeccC
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTD  107 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~~l~~---~~~~~ivv~nK~D  107 (162)
                      ++.++||||+..          +.....   ...+.+|++++|+|+..+.+-.. ..++..+..   .++|+++|+||+|
T Consensus        76 ~l~l~Dt~G~~~----------~~~~~~---~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~D  142 (201)
T 2ew1_A           76 KLQIWDTAGQER----------FRSITQ---SYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKID  142 (201)
T ss_dssp             EEEEEEECCSGG----------GHHHHG---GGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGG
T ss_pred             EEEEEECCCcHH----------HHHHHH---HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCC
Confidence            588999999821          122233   33456799999999876421111 223344433   3588999999999


Q ss_pred             CCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293          108 TVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  157 (162)
Q Consensus       108 l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~  157 (162)
                      +.+......  +..++.....+   .+++++||++|.|+++++.+|.+.+
T Consensus       143 l~~~~~v~~--~~~~~~~~~~~---~~~~~~Sa~~g~gv~~l~~~l~~~i  187 (201)
T 2ew1_A          143 LAERREVSQ--QRAEEFSEAQD---MYYLETSAKESDNVEKLFLDLACRL  187 (201)
T ss_dssp             GGGGCSSCH--HHHHHHHHHHT---CCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             CccccccCH--HHHHHHHHHcC---CEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            964322110  11222222222   4899999999999999999998755

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=99.62  E-value=8e-16  Score=102.58  Aligned_cols=137  Identities=11%  Similarity=0.093  Sum_probs=81.5

Q ss_pred             ChhcccCCCCceeccCCCCcceEEE--EEEeCC---ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEe
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTIN--FFKLGT---KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLI   75 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~--~~~~~~---~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vi   75 (162)
                      |+|+|++.. . .....|..+.+..  ....+.   .+.++||||+..          +.....   .....+|++++|+
T Consensus        26 li~~l~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----------~~~~~~---~~~~~~d~~i~v~   90 (186)
T 2bme_A           26 LLHQFIEKK-F-KDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQER----------FRSVTR---SYYRGAAGALLVY   90 (186)
T ss_dssp             HHHHHHHSS-C-CTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGG----------GHHHHH---TTSTTCSEEEEEE
T ss_pred             HHHHHHcCC-C-CCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHH----------HHHHHH---HHHhcCCEEEEEE
Confidence            467777662 2 2233343343332  233333   588999999822          122233   3345679999999


Q ss_pred             ecCCCCCccH-HHHHHHHHH---hCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHH
Q 031293           76 DTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRT  151 (162)
Q Consensus        76 d~~~~~~~~~-~~~~~~l~~---~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~  151 (162)
                      |+..+.+... ..++..+..   .++|+++|+||+|+.+......  ....+.....+   .+++++||++|.|+++++.
T Consensus        91 d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~--~~~~~~~~~~~---~~~~~~Sa~~~~gi~~l~~  165 (186)
T 2bme_A           91 DITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTF--LEASRFAQENE---LMFLETSALTGENVEEAFV  165 (186)
T ss_dssp             ETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCH--HHHHHHHHHTT---CEEEECCTTTCTTHHHHHH
T ss_pred             ECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCH--HHHHHHHHHcC---CEEEEecCCCCCCHHHHHH
Confidence            9876422111 123333332   3689999999999964322110  12223333333   4899999999999999999


Q ss_pred             HHHHhh
Q 031293          152 VLSKIA  157 (162)
Q Consensus       152 ~i~~~~  157 (162)
                      ++.+.+
T Consensus       166 ~l~~~~  171 (186)
T 2bme_A          166 QCARKI  171 (186)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998755

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=99.62  E-value=9.5e-16  Score=104.00  Aligned_cols=138  Identities=14%  Similarity=0.084  Sum_probs=81.7

Q ss_pred             ChhcccCCCCceeccCCCCcceE--EEEEEeCC---ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEe
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQT--INFFKLGT---KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLI   75 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~--~~~~~~~~---~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vi   75 (162)
                      |+|+|++...  .....|..+.+  ...+..+.   .+.++||||+...          ......+   ...+|++++|+
T Consensus        24 li~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----------~~~~~~~---~~~~d~vilv~   88 (206)
T 2bcg_Y           24 LLLRFSDDTY--TNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERF----------RTITSSY---YRGSHGIIIVY   88 (206)
T ss_dssp             HHHHHHHCCC--CTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTT----------TCCCGGG---GTTCSEEEEEE
T ss_pred             HHHHHhcCCC--CCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHH----------HHHHHHh---ccCCCEEEEEE
Confidence            4677776622  12223333333  23334433   5899999998322          1112222   34569999999


Q ss_pred             ecCCCCCccH-HHHHHHHHH---hCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHH
Q 031293           76 DTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRT  151 (162)
Q Consensus        76 d~~~~~~~~~-~~~~~~l~~---~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~  151 (162)
                      |+..+.+-.. ..++..+..   .+.|+++|+||+|+.+......  +...+.....+   .+++++||++|.|+++++.
T Consensus        89 d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~--~~~~~~~~~~~---~~~~~~Sa~~g~gi~~l~~  163 (206)
T 2bcg_Y           89 DVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEY--DVAKEFADANK---MPFLETSALDSTNVEDAFL  163 (206)
T ss_dssp             ETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCH--HHHHHHHHHTT---CCEEECCTTTCTTHHHHHH
T ss_pred             ECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCH--HHHHHHHHHcC---CeEEEEeCCCCCCHHHHHH
Confidence            9876432211 123333433   2588999999999975322110  12222333333   4899999999999999999


Q ss_pred             HHHHhhh
Q 031293          152 VLSKIAR  158 (162)
Q Consensus       152 ~i~~~~~  158 (162)
                      +|.+.+.
T Consensus       164 ~l~~~i~  170 (206)
T 2bcg_Y          164 TMARQIK  170 (206)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9987653

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=99.61  E-value=2e-15  Score=98.75  Aligned_cols=109  Identities=14%  Similarity=0.092  Sum_probs=68.3

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHHHHHH----hCCceEEEEecc
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKT  106 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~~l~~----~~~~~ivv~nK~  106 (162)
                      ++.++||||+..          +......++.   .+|++++|+|+..+.+-.. ..++..+..    .++|+++|+||+
T Consensus        53 ~~~l~D~~G~~~----------~~~~~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~  119 (168)
T 1u8z_A           53 QIDILDTAGQED----------YAAIRDNYFR---SGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKS  119 (168)
T ss_dssp             EEEEEECCC-------------CHHHHHHHHH---HCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECG
T ss_pred             EEEEEECCCcch----------hHHHHHHHhh---cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECc
Confidence            588999999822          2334444443   3599999999875321111 122233322    268999999999


Q ss_pred             CCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293          107 DTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR  158 (162)
Q Consensus       107 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~  158 (162)
                      |+.+.....  .+..++.....+   .+++++||++|.|++++++++.+.+.
T Consensus       120 Dl~~~~~~~--~~~~~~~~~~~~---~~~~~~Sa~~~~gi~~l~~~l~~~i~  166 (168)
T 1u8z_A          120 DLEDKRQVS--VEEAKNRADQWN---VNYVETSAKTRANVDKVFFDLMREIR  166 (168)
T ss_dssp             GGGGGCCSC--HHHHHHHHHHHT---CEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             cccccCccC--HHHHHHHHHHcC---CeEEEeCCCCCCCHHHHHHHHHHHHH
Confidence            986432211  112223333333   48999999999999999999987653

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=99.61  E-value=5.6e-16  Score=104.55  Aligned_cols=109  Identities=17%  Similarity=0.188  Sum_probs=69.9

Q ss_pred             CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHHHHHH-hCCceEEEEeccCC
Q 031293           31 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER-SQTKYQVVLTKTDT  108 (162)
Q Consensus        31 ~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~~l~~-~~~~~ivv~nK~Dl  108 (162)
                      ..+.++||||+...          ......++.   .+|++++|+|+..+.+... ..++..+.. .+.|+++|+||+|.
T Consensus        93 ~~~~i~Dt~G~~~~----------~~~~~~~~~---~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~piilv~NK~D~  159 (208)
T 3clv_A           93 IKFDIWDTAGQERY----------ASIVPLYYR---GATCAIVVFDISNSNTLDRAKTWVNQLKISSNYIIILVANKIDK  159 (208)
T ss_dssp             EEEEEEECTTGGGC----------TTTHHHHHT---TCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCCEEEEEEECTTC
T ss_pred             eEEEEEECCCcHHH----------HHHHHHHhc---CCCEEEEEEECCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCc
Confidence            45899999997322          223344433   4599999999986532222 223333333 46899999999993


Q ss_pred             CCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293          109 VFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR  158 (162)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~  158 (162)
                      . ....  ..+.+++.+...+   .+++++||++|.|+++++++|.+.+.
T Consensus       160 ~-~~~~--~~~~~~~~~~~~~---~~~~~~Sa~~~~~i~~l~~~l~~~~~  203 (208)
T 3clv_A          160 N-KFQV--DILEVQKYAQDNN---LLFIQTSAKTGTNIKNIFYMLAEEIY  203 (208)
T ss_dssp             C--CCS--CHHHHHHHHHHTT---CEEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred             c-cccC--CHHHHHHHHHHcC---CcEEEEecCCCCCHHHHHHHHHHHHH
Confidence            2 2111  1123333444443   48999999999999999999987653

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.61  E-value=2.3e-16  Score=105.95  Aligned_cols=140  Identities=12%  Similarity=0.035  Sum_probs=85.2

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT   77 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~   77 (162)
                      |+|+|++........+..|++........   +..+.++||||.          +.+......++.   .+|++++|+|+
T Consensus        39 li~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~----------~~~~~~~~~~~~---~~d~~i~v~d~  105 (191)
T 3dz8_A           39 FLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQ----------ERYRTITTAYYR---GAMGFILMYDI  105 (191)
T ss_dssp             HHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHH----------HHCHHHHHHHHT---TCCEEEEEEET
T ss_pred             HHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCCh----------HHHHHHHHHHHc---cCCEEEEEEEC
Confidence            46667665322233344455555444444   235899999997          222444445544   45999999998


Q ss_pred             CCCCCcc-HHHHHHHHHH---hCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHH
Q 031293           78 KWGVKPR-DHELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVL  153 (162)
Q Consensus        78 ~~~~~~~-~~~~~~~l~~---~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i  153 (162)
                      ..+.+-. ...++..+..   .++|+++|+||+|+.+......  +..+......+   .+++++||++|.|+++++++|
T Consensus       106 ~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~--~~~~~~~~~~~---~~~~~~Sa~~~~gi~~l~~~l  180 (191)
T 3dz8_A          106 TNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPT--EKGQLLAEQLG---FDFFEASAKENISVRQAFERL  180 (191)
T ss_dssp             TCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCH--HHHHHHHHHHT---CEEEECBTTTTBSHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCH--HHHHHHHHHcC---CeEEEEECCCCCCHHHHHHHH
Confidence            7532111 1224444444   3689999999999864322111  12222233333   489999999999999999999


Q ss_pred             HHhhh
Q 031293          154 SKIAR  158 (162)
Q Consensus       154 ~~~~~  158 (162)
                      .+.+.
T Consensus       181 ~~~i~  185 (191)
T 3dz8_A          181 VDAIC  185 (191)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88654

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=99.61  E-value=6.3e-16  Score=102.89  Aligned_cols=109  Identities=16%  Similarity=0.079  Sum_probs=60.5

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHHHHHH---hCCceEEEEeccC
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTD  107 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~~l~~---~~~~~ivv~nK~D  107 (162)
                      ++.++||||+             ..+........+.+|++++|+|+..+.+-.. ..++..+..   .++|+++|+||+|
T Consensus        58 ~~~l~Dt~G~-------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D  124 (183)
T 2fu5_C           58 KLQIWDTAGQ-------------ERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCD  124 (183)
T ss_dssp             EEEEEEC----------------------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--
T ss_pred             EEEEEcCCCC-------------hhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcc
Confidence            5899999998             2221112222356799999999876422111 123344433   2689999999999


Q ss_pred             CCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293          108 TVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR  158 (162)
Q Consensus       108 l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~  158 (162)
                      +.+.....  .+..++.....+   .+++++||++|.|+++++.+|.+.+.
T Consensus       125 l~~~~~v~--~~~~~~~~~~~~---~~~~~~Sa~~~~~i~~l~~~l~~~i~  170 (183)
T 2fu5_C          125 VNDKRQVS--KERGEKLALDYG---IKFMETSAKANINVENAFFTLARDIK  170 (183)
T ss_dssp             CCSCCCSC--HHHHHHHHHHHT---CEEEECCC---CCHHHHHHHHHHHHH
T ss_pred             CCccCcCC--HHHHHHHHHHcC---CeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            97532211  012222333333   48999999999999999999987653

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=99.61  E-value=1.8e-15  Score=102.51  Aligned_cols=110  Identities=14%  Similarity=0.068  Sum_probs=71.1

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHHHHHH---hCCceEEEEeccC
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTD  107 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~~l~~---~~~~~ivv~nK~D  107 (162)
                      ++.++||||+..          +......+++   .+|++++|+|+..+.+-.. ..++..+..   .++|+++|+||+|
T Consensus        79 ~l~i~Dt~G~~~----------~~~~~~~~~~---~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~D  145 (201)
T 2hup_A           79 KLQIWDTAGQER----------FRTITQSYYR---SANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSD  145 (201)
T ss_dssp             EEEEECCTTCGG----------GHHHHHHHHT---TCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTT
T ss_pred             EEEEEECCCcHh----------HHHHHHHHHh---hCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCc
Confidence            689999999822          2344455544   4599999999876321111 223344433   3589999999999


Q ss_pred             CCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293          108 TVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR  158 (162)
Q Consensus       108 l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~  158 (162)
                      +.+.....  .+..++.....+.  .+++++||++|.|+++++.+|.+.+.
T Consensus       146 l~~~~~v~--~~~~~~~~~~~~~--~~~~~~SA~~g~gi~~l~~~l~~~i~  192 (201)
T 2hup_A          146 LSELREVS--LAEAQSLAEHYDI--LCAIETSAKDSSNVEEAFLRVATELI  192 (201)
T ss_dssp             CGGGCCSC--HHHHHHHHHHTTC--SEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred             cccccccC--HHHHHHHHHHcCC--CEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            96422111  1123333333321  38899999999999999999987653

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=99.61  E-value=1.9e-15  Score=102.38  Aligned_cols=108  Identities=15%  Similarity=0.087  Sum_probs=62.4

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHHHHHH------hCCceEEEEe
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER------SQTKYQVVLT  104 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~~l~~------~~~~~ivv~n  104 (162)
                      .+.++||||+             ..+..........+|++++|+|+..+.+-.. ..++..+..      .++|+++|+|
T Consensus        74 ~~~l~Dt~G~-------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~n  140 (208)
T 2yc2_C           74 ELFLLDTAGS-------------DLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVAN  140 (208)
T ss_dssp             EEEEEETTTT-------------HHHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEE
T ss_pred             EEEEEECCCc-------------HHHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEE
Confidence            4899999999             3333333334566799999999876432111 233444443      3789999999


Q ss_pred             ccCCCC-cHHHHHHHHHHHHHHHhcCCCCCCeEEeecCC-CCCHHHHHHHHHHhh
Q 031293          105 KTDTVF-PIDVARRAMQIEESLKANNSLVQPVMMVSSKS-GAGIRSLRTVLSKIA  157 (162)
Q Consensus       105 K~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~-~~g~~~l~~~i~~~~  157 (162)
                      |+|+.+ .....  .+...+.....+   .+++++||++ |.|+++++++|.+.+
T Consensus       141 K~Dl~~~~~~v~--~~~~~~~~~~~~---~~~~~~Sa~~~~~gi~~l~~~i~~~~  190 (208)
T 2yc2_C          141 KTDLPPQRHQVR--LDMAQDWATTNT---LDFFDVSANPPGKDADAPFLSIATTF  190 (208)
T ss_dssp             CC-------CCC--HHHHHHHHHHTT---CEEEECCC-------CHHHHHHHHHH
T ss_pred             CcccchhhccCC--HHHHHHHHHHcC---CEEEEeccCCCCcCHHHHHHHHHHHH
Confidence            999975 22211  122333344343   4899999999 999999999998755

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.61  E-value=2.6e-16  Score=104.69  Aligned_cols=138  Identities=17%  Similarity=0.164  Sum_probs=82.0

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEe-CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCC
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKL-GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW   79 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~-~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~   79 (162)
                      |+|+|++. ......++.|.+..  .... +.++.++||||+...          ......   ....+|++++|+|+..
T Consensus        34 li~~l~~~-~~~~~~~t~~~~~~--~~~~~~~~~~i~Dt~G~~~~----------~~~~~~---~~~~~d~ii~v~d~~~   97 (183)
T 1moz_A           34 ILYRLQIG-EVVTTKPTIGFNVE--TLSYKNLKLNVWDLGGQTSI----------RPYWRC---YYADTAAVIFVVDSTD   97 (183)
T ss_dssp             HHHHTCCS-EEEEECSSTTCCEE--EEEETTEEEEEEEEC----C----------CTTGGG---TTTTEEEEEEEEETTC
T ss_pred             HHHHHhcC-CcCccCCcCccceE--EEEECCEEEEEEECCCCHhH----------HHHHHH---HhccCCEEEEEEECCC
Confidence            46777766 34555666664432  2223 456899999998321          111222   2356799999999876


Q ss_pred             CCCccH-HHHHHHH-H---HhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhc--CCCCCCeEEeecCCCCCHHHHHHH
Q 031293           80 GVKPRD-HELISLM-E---RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKAN--NSLVQPVMMVSSKSGAGIRSLRTV  152 (162)
Q Consensus        80 ~~~~~~-~~~~~~l-~---~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~Sa~~~~g~~~l~~~  152 (162)
                      +.+-.. ..++..+ .   ..+.|+++|+||+|+.+.....    .+.+.+...  .....+++++||++|.|+++++++
T Consensus        98 ~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~----~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  173 (183)
T 1moz_A           98 KDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSAS----EVSKELNLVELKDRSWSIVASSAIKGEGITEGLDW  173 (183)
T ss_dssp             TTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHH----HHHHHTTTTTCCSSCEEEEEEBGGGTBTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHH----HHHHHhCcccccCCceEEEEccCCCCcCHHHHHHH
Confidence            532221 1222222 2   2468999999999997542222    222222211  112247999999999999999999


Q ss_pred             HHHhhh
Q 031293          153 LSKIAR  158 (162)
Q Consensus       153 i~~~~~  158 (162)
                      |.+.+.
T Consensus       174 l~~~~~  179 (183)
T 1moz_A          174 LIDVIK  179 (183)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            988764

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=99.61  E-value=1.5e-15  Score=101.69  Aligned_cols=140  Identities=15%  Similarity=0.148  Sum_probs=80.4

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEeCC---ceEEEcCCCCcccccCHHHHHHHH-HHHHHHHhcCcccceeEEEee
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKLGT---KLCLVDLPGYGFAYAKEEVKDAWE-ELVKEYVSTRVSLKRVCLLID   76 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~~~---~~~ivDtpG~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~vi~vid   76 (162)
                      |+|+|++........+..|.+.....+..+.   ++.++||||.          +.+. .....+++   .+|++++|+|
T Consensus        36 li~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~----------~~~~~~~~~~~~~---~~d~iilv~D  102 (189)
T 1z06_A           36 LTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ----------ERFRKSMVQHYYR---NVHAVVFVYD  102 (189)
T ss_dssp             HHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCS----------HHHHTTTHHHHHT---TCCEEEEEEE
T ss_pred             HHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCc----------hhhhhhhhHHHhc---CCCEEEEEEE
Confidence            4677776522222233333333333344433   5899999998          2222 33444443   4699999999


Q ss_pred             cCCCCCccH-HHHHHHHHH----hCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCC---CCHHH
Q 031293           77 TKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSG---AGIRS  148 (162)
Q Consensus        77 ~~~~~~~~~-~~~~~~l~~----~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~---~g~~~  148 (162)
                      +..+.+-.. ..++..+..    .++|+++|+||+|+.+......  +..++.....+   .+++++||++|   .|+++
T Consensus       103 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~--~~~~~~~~~~~---~~~~~~Sa~~~~~~~~i~~  177 (189)
T 1z06_A          103 MTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPT--DLAQKFADTHS---MPLFETSAKNPNDNDHVEA  177 (189)
T ss_dssp             TTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCH--HHHHHHHHHTT---CCEEECCSSSGGGGSCHHH
T ss_pred             CcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCH--HHHHHHHHHcC---CEEEEEeCCcCCcccCHHH
Confidence            876321111 223333322    3689999999999964322111  12223333333   48999999999   99999


Q ss_pred             HHHHHHHhhh
Q 031293          149 LRTVLSKIAR  158 (162)
Q Consensus       149 l~~~i~~~~~  158 (162)
                      ++.+|.+.+.
T Consensus       178 l~~~l~~~i~  187 (189)
T 1z06_A          178 IFMTLAHKLK  187 (189)
T ss_dssp             HHHHHC----
T ss_pred             HHHHHHHHHh
Confidence            9999977653

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=99.60  E-value=4.8e-15  Score=98.63  Aligned_cols=137  Identities=12%  Similarity=0.033  Sum_probs=81.7

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEE--EEeCC---ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEe
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINF--FKLGT---KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLI   75 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~--~~~~~---~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vi   75 (162)
                      |+|+|++.. .  ....++++.....  +..+.   .+.++||||+...          ......++.   .+|++++|+
T Consensus        34 li~~l~~~~-~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----------~~~~~~~~~---~~d~~i~v~   97 (187)
T 2a9k_A           34 LTLQFMYDE-F--VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY----------AAIRDNYFR---SGEGFLCVF   97 (187)
T ss_dssp             HHHHHHHSC-C--CCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCC----------HHHHHHHHH---HCSEEEEEE
T ss_pred             HHHHHhhCC-C--CCcCCCccceEEEEEEEECCEEEEEEEEECCCCccc----------HHHHHHHhc---cCCEEEEEE
Confidence            467777662 1  2333333332221  23332   5889999998322          333444443   359999999


Q ss_pred             ecCCCCCccH-HHHHHHHHH----hCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHH
Q 031293           76 DTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLR  150 (162)
Q Consensus        76 d~~~~~~~~~-~~~~~~l~~----~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~  150 (162)
                      |+....+-.. ..++..+..    .++|+++|+||+|+.+.....  .+..++.+...+   .+++++||++|.|+++++
T Consensus        98 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~--~~~~~~~~~~~~---~~~~~~Sa~~~~gi~~l~  172 (187)
T 2a9k_A           98 SITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVS--VEEAKNRAEQWN---VNYVETSAKTRANVDKVF  172 (187)
T ss_dssp             ETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSC--HHHHHHHHHHTT---CEEEECCTTTCTTHHHHH
T ss_pred             ECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccC--HHHHHHHHHHcC---CeEEEeCCCCCCCHHHHH
Confidence            9875321111 122222222    268999999999986432211  122333344333   489999999999999999


Q ss_pred             HHHHHhhh
Q 031293          151 TVLSKIAR  158 (162)
Q Consensus       151 ~~i~~~~~  158 (162)
                      .+|.+.+.
T Consensus       173 ~~l~~~i~  180 (187)
T 2a9k_A          173 FDLMREIR  180 (187)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99988764

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=99.60  E-value=8.6e-15  Score=100.03  Aligned_cols=112  Identities=13%  Similarity=0.075  Sum_probs=65.7

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHH--HHHHHHHHh--CCceEEEEeccC
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDH--ELISLMERS--QTKYQVVLTKTD  107 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~--~~~~~l~~~--~~~~ivv~nK~D  107 (162)
                      .+.++||||+.          .+......++   ..+|++++|+|+..+.+-...  .++..+...  ++|+++|+||+|
T Consensus        83 ~l~l~Dt~G~~----------~~~~~~~~~~---~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D  149 (214)
T 2j1l_A           83 HLHIWDTAGQD----------DYDRLRPLFY---PDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTD  149 (214)
T ss_dssp             EEEEEEC----------------------------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGG
T ss_pred             EEEEEECCCch----------hhhHHHHHHh---ccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChh
Confidence            58899999982          2233333333   456999999998764221111  233444432  689999999999


Q ss_pred             CCCcHHHHHHH----------HHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293          108 TVFPIDVARRA----------MQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR  158 (162)
Q Consensus       108 l~~~~~~~~~~----------~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~  158 (162)
                      +.......+..          +...+.....+  ..+++++||++|.|+++++.+|.+.+.
T Consensus       150 l~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~~~~~~~SA~~g~gi~el~~~l~~~~~  208 (214)
T 2j1l_A          150 LRKDKSLVNKLRRNGLEPVTYHRGQEMARSVG--AVAYLECSARLHDNVHAVFQEAAEVAL  208 (214)
T ss_dssp             GGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTT--CSEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred             hhccchhhhhhcccccCcccHHHHHHHHHhcC--CCEEEEecCCCCCCHHHHHHHHHHHHH
Confidence            98654332211          12233333332  248999999999999999999987654

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=99.60  E-value=6.5e-15  Score=98.56  Aligned_cols=108  Identities=17%  Similarity=0.147  Sum_probs=65.8

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHHHHHH----hCCceEEEEecc
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKT  106 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~~l~~----~~~~~ivv~nK~  106 (162)
                      .+.++||||..          .+......+   ...+|++++|+|.....+..+ ..++..+..    .++|+++|+||+
T Consensus        70 ~~~l~Dt~G~~----------~~~~~~~~~---~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~  136 (190)
T 3con_A           70 LLDILDTAGQE----------EYSAMRDQY---MRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKC  136 (190)
T ss_dssp             EEEEEECCC------------------------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECT
T ss_pred             EEEEEECCChH----------HHHHHHHHh---hCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECC
Confidence            38899999982          122333333   345699999999876432112 122333332    268999999999


Q ss_pred             CCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293          107 DTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR  158 (162)
Q Consensus       107 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~  158 (162)
                      |+.+.....+   ..++.....+   .+++++||++|.|+++++.+|.+.+.
T Consensus       137 Dl~~~~~~~~---~~~~~~~~~~---~~~~~~Sa~~~~gi~~l~~~l~~~~~  182 (190)
T 3con_A          137 DLPTRTVDTK---QAHELAKSYG---IPFIETSAKTRQGVEDAFYTLVREIR  182 (190)
T ss_dssp             TCSCCCSCHH---HHHHHHHHHT---CCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             cCCcccCCHH---HHHHHHHHcC---CeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            9875321111   2222333333   48999999999999999999988764

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=99.60  E-value=1.4e-15  Score=116.93  Aligned_cols=98  Identities=18%  Similarity=0.269  Sum_probs=68.9

Q ss_pred             ccCCCCcceEEE--EEEe-CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHH
Q 031293           14 TSDKPGLTQTIN--FFKL-GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELIS   90 (162)
Q Consensus        14 ~~~~~g~t~~~~--~~~~-~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~   90 (162)
                      .+...|+|....  .+.+ +.+++++|||||             .+|..+..+.++.+|++++|+||.+++..++...++
T Consensus        80 ~EreRGITI~s~~~~~~~~~~~iNlIDTPGH-------------vDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~  146 (548)
T 3vqt_A           80 MERERGISVTTSVMQFPYRDRVVNLLDTPGH-------------QDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMD  146 (548)
T ss_dssp             --------CTTTEEEEEETTEEEEEECCCCG-------------GGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHH
T ss_pred             HHHHCCCcEeeceEEEEECCEEEEEEeCCCc-------------HHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHH
Confidence            445667664222  2333 667999999999             666777777777889999999999999999999999


Q ss_pred             HHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHH
Q 031293           91 LMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESL  125 (162)
Q Consensus        91 ~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~  125 (162)
                      .+.+.++|.++++||+|....+ ....++.+++.+
T Consensus       147 ~a~~~~lp~i~fINK~Dr~~ad-~~~~~~~i~~~l  180 (548)
T 3vqt_A          147 VCRMRATPVMTFVNKMDREALH-PLDVMADIEQHL  180 (548)
T ss_dssp             HHHHTTCCEEEEEECTTSCCCC-HHHHHHHHHHHH
T ss_pred             HHHHhCCceEEEEecccchhcc-hhHhhhhhhhhc
Confidence            9999999999999999987433 233334444433

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=99.60  E-value=5.3e-16  Score=104.12  Aligned_cols=139  Identities=14%  Similarity=0.061  Sum_probs=83.4

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEeC---CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKLG---TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT   77 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~~---~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~   77 (162)
                      |+|+|++........+..|.+........+   .++.++||||+...          ......++.   .+|++++|+|+
T Consensus        31 li~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~~~~~~---~~d~ii~v~d~   97 (195)
T 1x3s_A           31 LLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERF----------RTLTPSYYR---GAQGVILVYDV   97 (195)
T ss_dssp             HHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGG----------CCSHHHHHT---TCCEEEEEEET
T ss_pred             HHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhh----------hhhhHHHhc---cCCEEEEEEEC
Confidence            467777663222233444444444444443   35889999998322          222334433   45999999998


Q ss_pred             CCCCCccH-HHHHHHHHH----hCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHH
Q 031293           78 KWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTV  152 (162)
Q Consensus        78 ~~~~~~~~-~~~~~~l~~----~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~  152 (162)
                      ..+.+... ..++..+..    .++|+++|+||+|+.......   +...+.....+   .+++++||++|.|+++++++
T Consensus        98 ~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~---~~~~~~~~~~~---~~~~~~Sa~~~~gi~~l~~~  171 (195)
T 1x3s_A           98 TRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDR---NEGLKFARKHS---MLFIEASAKTCDGVQCAFEE  171 (195)
T ss_dssp             TCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCH---HHHHHHHHHTT---CEEEECCTTTCTTHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCH---HHHHHHHHHcC---CEEEEecCCCCCCHHHHHHH
Confidence            76422111 123333433    257899999999995432111   12223333333   48999999999999999999


Q ss_pred             HHHhhh
Q 031293          153 LSKIAR  158 (162)
Q Consensus       153 i~~~~~  158 (162)
                      |.+.+.
T Consensus       172 l~~~~~  177 (195)
T 1x3s_A          172 LVEKII  177 (195)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            987653

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=99.60  E-value=7.6e-16  Score=101.87  Aligned_cols=138  Identities=16%  Similarity=0.109  Sum_probs=81.3

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEE--EEeCC---ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEe
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINF--FKLGT---KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLI   75 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~--~~~~~---~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vi   75 (162)
                      |+|+|++.. . .....|..+.+...  ...+.   ++.++||||+...          ......++.   .+|++++|+
T Consensus        30 li~~l~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~----------~~~~~~~~~---~~d~~i~v~   94 (179)
T 2y8e_A           30 LITRFMYDS-F-DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF----------RSLIPSYIR---DSTVAVVVY   94 (179)
T ss_dssp             HHHHHHHSC-C-CSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGG----------GGGSHHHHH---TCSEEEEEE
T ss_pred             HHHHHHcCC-C-CCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHH----------HHHHHHHhc---CCCEEEEEE
Confidence            467777652 2 22334444433332  33332   5899999997321          223334433   359999999


Q ss_pred             ecCCCCCcc-HHHHHHHHHH---hCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHH
Q 031293           76 DTKWGVKPR-DHELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRT  151 (162)
Q Consensus        76 d~~~~~~~~-~~~~~~~l~~---~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~  151 (162)
                      |+..+.+-. ...++..+..   .++|+++|+||+|+.+......  +.........+   .+++++||++|.|++++++
T Consensus        95 d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~--~~~~~~~~~~~---~~~~~~Sa~~~~~i~~l~~  169 (179)
T 2y8e_A           95 DITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVST--EEGERKAKELN---VMFIETSAKAGYNVKQLFR  169 (179)
T ss_dssp             ETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCH--HHHHHHHHHHT---CEEEEEBTTTTBSHHHHHH
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCH--HHHHHHHHHcC---CeEEEEeCCCCCCHHHHHH
Confidence            987532111 1223333322   3689999999999874322110  11222223232   4899999999999999999


Q ss_pred             HHHHhhh
Q 031293          152 VLSKIAR  158 (162)
Q Consensus       152 ~i~~~~~  158 (162)
                      +|.+.+.
T Consensus       170 ~l~~~~~  176 (179)
T 2y8e_A          170 RVAAALP  176 (179)
T ss_dssp             HHHHTCC
T ss_pred             HHHHHHh
Confidence            9988664

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=99.60  E-value=6.3e-16  Score=106.30  Aligned_cols=140  Identities=11%  Similarity=0.068  Sum_probs=78.2

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEeCC---ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKLGT---KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT   77 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~~~---~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~   77 (162)
                      |+|+|++........+..|.+.....+..+.   .+.+|||||+...          ......+   .+.+|++++|+|+
T Consensus        29 li~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~~~~---~~~~d~vilV~D~   95 (223)
T 3cpj_B           29 LLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERY----------RAITSAY---YRGAVGALIVYDI   95 (223)
T ss_dssp             HHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTT----------TCCCGGG---TTTCCEEEEEEC-
T ss_pred             HHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccch----------hhhHHHH---hccCCEEEEEEeC
Confidence            4677776622112223333333333344433   6899999998321          1112222   3456999999998


Q ss_pred             CCCCCccH-HHHHHHHHHh---CCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHH
Q 031293           78 KWGVKPRD-HELISLMERS---QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVL  153 (162)
Q Consensus        78 ~~~~~~~~-~~~~~~l~~~---~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i  153 (162)
                      ..+.+-.. ..++..+...   ++|+++|+||+|+.+......  +...+.....+   .+++++||++|.|+++++++|
T Consensus        96 ~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~--~~~~~~~~~~~---~~~~~~Sa~~~~gi~~l~~~l  170 (223)
T 3cpj_B           96 SKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPT--EESKTFAQENQ---LLFTETSALNSENVDKAFEEL  170 (223)
T ss_dssp             CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCH--HHHHHHHHHTT---CEEEECCCC-CCCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCH--HHHHHHHHHcC---CEEEEEeCCCCCCHHHHHHHH
Confidence            76432222 1233444432   689999999999964322110  12223333333   489999999999999999999


Q ss_pred             HHhhh
Q 031293          154 SKIAR  158 (162)
Q Consensus       154 ~~~~~  158 (162)
                      .+.+.
T Consensus       171 ~~~i~  175 (223)
T 3cpj_B          171 INTIY  175 (223)
T ss_dssp             HHHHT
T ss_pred             HHHHH
Confidence            87653

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.60  E-value=4.4e-15  Score=99.76  Aligned_cols=111  Identities=12%  Similarity=-0.016  Sum_probs=71.2

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHH--HHHHHHHHh--CCceEEEEeccC
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDH--ELISLMERS--QTKYQVVLTKTD  107 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~--~~~~~l~~~--~~~~ivv~nK~D  107 (162)
                      .+.++||||+...          ......+   .+.+|++++|+|+..+.+-...  .++..+...  ++|+++|+||+|
T Consensus        67 ~~~i~D~~G~~~~----------~~~~~~~---~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D  133 (194)
T 2atx_A           67 LLGLYDTAGQEDY----------DRLRPLS---YPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQID  133 (194)
T ss_dssp             EEEEECCCCSSSS----------TTTGGGG---CTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTT
T ss_pred             EEEEEECCCCcch----------hHHHHHh---cCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChh
Confidence            5889999998332          1122222   3456999999998764221121  344555544  789999999999


Q ss_pred             CCCcHHHHHH----------HHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293          108 TVFPIDVARR----------AMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  157 (162)
Q Consensus       108 l~~~~~~~~~----------~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~  157 (162)
                      +.+.......          .+...+.....+  ..+++++||++|.|+++++.+|.+.+
T Consensus       134 l~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~~~~~~~Sa~~g~gi~~l~~~l~~~i  191 (194)
T 2atx_A          134 LRDDPKTLARLNDMKEKPICVEQGQKLAKEIG--ACCYVECSALTQKGLKTVFDEAIIAI  191 (194)
T ss_dssp             STTCHHHHHHHTTTTCCCCCHHHHHHHHHHHT--CSCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             hcccccchhhcccccCcccCHHHHHHHHHHcC--CcEEEEeeCCCCCCHHHHHHHHHHHH
Confidence            9864322110          112222333232  24899999999999999999998764

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=99.60  E-value=5.6e-15  Score=99.95  Aligned_cols=111  Identities=12%  Similarity=0.050  Sum_probs=71.2

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH--HHHHHHHHHh--CCceEEEEeccC
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMERS--QTKYQVVLTKTD  107 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~--~~~~~~l~~~--~~~~ivv~nK~D  107 (162)
                      .+.++||||+...          ......   ....+|++++|+|...+.+-..  ..++..+...  ++|+++|+||+|
T Consensus        74 ~l~i~Dt~G~~~~----------~~~~~~---~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D  140 (201)
T 2gco_A           74 ELALWDTAGQEDY----------DRLRPL---SYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD  140 (201)
T ss_dssp             EEEEECCCCSGGG----------TTTGGG---GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGG
T ss_pred             EEEEEECCCchhH----------HHHHHH---hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHH
Confidence            5889999998221          111222   2355799999999876322111  2344555544  789999999999


Q ss_pred             CCCcHHHHHHH----------HHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293          108 TVFPIDVARRA----------MQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  157 (162)
Q Consensus       108 l~~~~~~~~~~----------~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~  157 (162)
                      +.+.....+..          +...+.....+  ..+++++||++|.|+++++++|.+.+
T Consensus       141 l~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~~~~~~~SA~~g~gi~~l~~~i~~~~  198 (201)
T 2gco_A          141 LRQDEHTRRELAKMKQEPVRSEEGRDMANRIS--AFGYLECSAKTKEGVREVFEMATRAG  198 (201)
T ss_dssp             GTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTT--CSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             hhcCccchhhhcccccCcCCHHHHHHHHHhCC--CcEEEEeeCCCCCCHHHHHHHHHHHH
Confidence            98654322211          12222233222  23789999999999999999998754

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=99.60  E-value=1.7e-15  Score=102.85  Aligned_cols=110  Identities=14%  Similarity=-0.001  Sum_probs=71.2

Q ss_pred             eEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHH--HHHHHHHHh--CCceEEEEeccCC
Q 031293           33 LCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDH--ELISLMERS--QTKYQVVLTKTDT  108 (162)
Q Consensus        33 ~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~--~~~~~l~~~--~~~~ivv~nK~Dl  108 (162)
                      +.++||||+...          ......   ..+.+|++++|+|+..+.+-...  .++..+...  ++|+++|+||+|+
T Consensus        80 l~i~Dt~G~~~~----------~~~~~~---~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl  146 (204)
T 4gzl_A           80 LGLWDTAGLEDY----------DRLRPL---SYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDL  146 (204)
T ss_dssp             EEEEEECCSGGG----------TTTGGG---GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHH
T ss_pred             EEEEECCCchhh----------HHHHHH---HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhh
Confidence            569999998221          112222   34567999999999864322222  344555544  7899999999999


Q ss_pred             CCcHHHHHHH----------HHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293          109 VFPIDVARRA----------MQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  157 (162)
Q Consensus       109 ~~~~~~~~~~----------~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~  157 (162)
                      .+.....+..          +.........+.  .+++++||++|.|+++++++|.+.+
T Consensus       147 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~~~~SA~~g~gi~~l~~~l~~~~  203 (204)
T 4gzl_A          147 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGA--VKYLECSALTQRGLKTVFDEAIRAV  203 (204)
T ss_dssp             HTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTC--SEEEECCTTTCTTHHHHHHHHHHTT
T ss_pred             ccchhhhhhhhccccccccHHHHHHHHHhcCC--cEEEEeeCCCCCCHHHHHHHHHHHh
Confidence            7654422211          122223333332  4699999999999999999998753

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=99.60  E-value=1.1e-15  Score=103.41  Aligned_cols=137  Identities=11%  Similarity=0.092  Sum_probs=77.1

Q ss_pred             ChhcccCCCCceeccCCCCcc--eEEEEEEeC---CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEe
Q 031293            1 MLNALTRQWGVVRTSDKPGLT--QTINFFKLG---TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLI   75 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t--~~~~~~~~~---~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vi   75 (162)
                      |+|+|++.. .. ....|..+  ........+   ..+.++||||+.          .+......++   ..+|++++|+
T Consensus        41 Li~~l~~~~-~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~----------~~~~~~~~~~---~~~d~~i~v~  105 (200)
T 2o52_A           41 LLHQFIENK-FK-QDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQE----------RFRSVTRSYY---RGAAGALLVY  105 (200)
T ss_dssp             HHHHHHC--------------CCEEEEEEEETTEEEEEEEECCTTHH----------HHSCCCHHHH---TTCSEEEEEE
T ss_pred             HHHHHHhCC-CC-ccCCCcccceeEEEEEEECCeeeEEEEEcCCCcH----------hHHHHHHHHh---ccCCEEEEEE
Confidence            467777662 22 22223323  223333343   368999999981          1222233443   3459999999


Q ss_pred             ecCCCCCccH-HHHHHHHHH---hCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHH
Q 031293           76 DTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRT  151 (162)
Q Consensus        76 d~~~~~~~~~-~~~~~~l~~---~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~  151 (162)
                      |+..+.+-.. ..++..+..   .++|+++|+||+|+.+......  ....+.....+   .+++++||++|.|+++++.
T Consensus       106 d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~--~~~~~~~~~~~---~~~~~~SA~~g~gi~~l~~  180 (200)
T 2o52_A          106 DITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTF--LEASRFAQENE---LMFLETSALTGENVEEAFL  180 (200)
T ss_dssp             ETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCH--HHHHHHHHHTT---CEEEEECTTTCTTHHHHHH
T ss_pred             ECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCH--HHHHHHHHHcC---CEEEEEeCCCCCCHHHHHH
Confidence            9876422111 223333332   3689999999999864322110  12223333333   4899999999999999999


Q ss_pred             HHHHhh
Q 031293          152 VLSKIA  157 (162)
Q Consensus       152 ~i~~~~  157 (162)
                      +|.+.+
T Consensus       181 ~l~~~i  186 (200)
T 2o52_A          181 KCARTI  186 (200)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998755

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=99.59  E-value=8.2e-16  Score=100.71  Aligned_cols=139  Identities=13%  Similarity=0.052  Sum_probs=80.2

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEeCC---ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKLGT---KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT   77 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~~~---~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~   77 (162)
                      |+|+|++........+..|.+........+.   ++.++||||+...          ......++.   .+|++++|+|+
T Consensus        21 l~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----------~~~~~~~~~---~~d~~i~v~d~   87 (168)
T 1z2a_A           21 MIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEF----------DAITKAYYR---GAQACVLVFST   87 (168)
T ss_dssp             HHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGT----------TCCCHHHHT---TCCEEEEEEET
T ss_pred             HHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhH----------HHHHHHHhc---CCCEEEEEEEC
Confidence            4677776622111222222222222333332   5899999997322          122333433   45999999998


Q ss_pred             CCCCCccH-HHHHHHHHH--hCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHH
Q 031293           78 KWGVKPRD-HELISLMER--SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLS  154 (162)
Q Consensus        78 ~~~~~~~~-~~~~~~l~~--~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~  154 (162)
                      ..+.+-.. ..++..+..  .+.|+++|+||+|+.+.....  .+..++.....+   .+++++||++|.|+++++++|.
T Consensus        88 ~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~--~~~~~~~~~~~~---~~~~~~Sa~~~~~i~~l~~~l~  162 (168)
T 1z2a_A           88 TDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSCIK--NEEAEGLAKRLK---LRFYRTSVKEDLNVSEVFKYLA  162 (168)
T ss_dssp             TCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGGCSSC--HHHHHHHHHHHT---CEEEECBTTTTBSSHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccCcccccC--HHHHHHHHHHcC---CeEEEEecCCCCCHHHHHHHHH
Confidence            76421111 123333322  378999999999987432210  012222333333   4899999999999999999998


Q ss_pred             Hhh
Q 031293          155 KIA  157 (162)
Q Consensus       155 ~~~  157 (162)
                      +.+
T Consensus       163 ~~~  165 (168)
T 1z2a_A          163 EKH  165 (168)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            765

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=99.59  E-value=8.7e-16  Score=105.01  Aligned_cols=106  Identities=16%  Similarity=0.166  Sum_probs=69.5

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHH-------hCCceEEEEe
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMER-------SQTKYQVVLT  104 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~-------~~~~~ivv~n  104 (162)
                      ++.+|||||+          +.+......++   ..+|++++|+|+..+.+-  .....++..       .++|+++|+|
T Consensus        85 ~l~l~Dt~G~----------~~~~~~~~~~~---~~~d~iilV~D~~~~~s~--~~~~~~l~~i~~~~~~~~~piilV~N  149 (217)
T 2f7s_A           85 HLQLWDTAGQ----------ERFRSLTTAFF---RDAMGFLLMFDLTSQQSF--LNVRNWMSQLQANAYCENPDIVLIGN  149 (217)
T ss_dssp             EEEEEEEESH----------HHHHHHHHHHH---TTCCEEEEEEETTCHHHH--HHHHHHHHTCCCCCTTTCCEEEEEEE
T ss_pred             EEEEEECCCc----------HhHHhHHHHHh---cCCCEEEEEEECcCHHHH--HHHHHHHHHHHHhcCcCCCCEEEEEE
Confidence            5899999998          23334444444   345999999998764211  112223332       3578999999


Q ss_pred             ccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293          105 KTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  157 (162)
Q Consensus       105 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~  157 (162)
                      |+|+.+.....  .+..++.....+   .+++++||++|.|+++++++|.+.+
T Consensus       150 K~Dl~~~~~v~--~~~~~~~~~~~~---~~~~~~Sa~~g~gi~~l~~~l~~~i  197 (217)
T 2f7s_A          150 KADLPDQREVN--ERQARELADKYG---IPYFETSAATGQNVEKAVETLLDLI  197 (217)
T ss_dssp             CTTCGGGCCSC--HHHHHHHHHHTT---CCEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred             CCccccccccC--HHHHHHHHHHCC---CcEEEEECCCCCCHHHHHHHHHHHH
Confidence            99996432211  122333333333   4899999999999999999998765

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.59  E-value=3.5e-15  Score=97.95  Aligned_cols=110  Identities=14%  Similarity=0.061  Sum_probs=69.7

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCc-cHHHHHHHHHH-----hCCceEEEEec
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKP-RDHELISLMER-----SQTKYQVVLTK  105 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~-~~~~~~~~l~~-----~~~~~ivv~nK  105 (162)
                      .+.++||||+...          ......++..   +|++++|+|+..+.+. ....++..+..     .++|+++|+||
T Consensus        52 ~~~~~Dt~G~~~~----------~~~~~~~~~~---~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK  118 (172)
T 2erx_A           52 TLQITDTTGSHQF----------PAMQRLSISK---GHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNK  118 (172)
T ss_dssp             EEEEEECCSCSSC----------HHHHHHHHHH---CSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEEC
T ss_pred             EEEEEECCCchhh----------HHHHHHhccc---CCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEc
Confidence            4899999998332          2333444433   5999999998753211 11223333332     26899999999


Q ss_pred             cCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhhh
Q 031293          106 TDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARF  159 (162)
Q Consensus       106 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~~  159 (162)
                      +|+.+......  ..........+   .+++++||++|.|+++++++|.+.++.
T Consensus       119 ~Dl~~~~~v~~--~~~~~~~~~~~---~~~~~~Sa~~~~gi~~l~~~l~~~~~~  167 (172)
T 2erx_A          119 CDESPSREVQS--SEAEALARTWK---CAFMETSAKLNHNVKELFQELLNLEKR  167 (172)
T ss_dssp             GGGGGGCCSCH--HHHHHHHHHHT---CEEEECBTTTTBSHHHHHHHHHHTCCS
T ss_pred             cccccccccCH--HHHHHHHHHhC---CeEEEecCCCCcCHHHHHHHHHHHHhh
Confidence            99864322211  11122222222   489999999999999999999987653

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=99.59  E-value=9e-16  Score=103.06  Aligned_cols=139  Identities=13%  Similarity=0.049  Sum_probs=82.0

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT   77 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~   77 (162)
                      |+|+|++........+..|.+........   +.++.++||||+...          ......++.   .+|++++|+|+
T Consensus        41 Li~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~~~~~~---~~d~vi~v~D~  107 (193)
T 2oil_A           41 LLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERY----------RAITSAYYR---GAVGALLVFDL  107 (193)
T ss_dssp             HHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTT----------CTTHHHHHT---TCCEEEEEEET
T ss_pred             HHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhh----------hhhhHHHhc---cCCEEEEEEEC
Confidence            46777776321122223333333233333   235889999998332          223334433   45999999998


Q ss_pred             CCCCCccH-HHHHHHHHH---hCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHH
Q 031293           78 KWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVL  153 (162)
Q Consensus        78 ~~~~~~~~-~~~~~~l~~---~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i  153 (162)
                      ..+.+-.. ..++..+..   .++|+++|+||+|+.+.....  .+..+......+   .+++++||++|.|+++++.+|
T Consensus       108 ~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~--~~~~~~~~~~~~---~~~~~~Sa~~~~gi~~l~~~l  182 (193)
T 2oil_A          108 TKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVP--TEEARMFAENNG---LLFLETSALDSTNVELAFETV  182 (193)
T ss_dssp             TCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSC--HHHHHHHHHHTT---CEEEEECTTTCTTHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccC--HHHHHHHHHHcC---CEEEEEeCCCCCCHHHHHHHH
Confidence            76422111 223344433   268899999999997432211  112233333333   489999999999999999999


Q ss_pred             HHhh
Q 031293          154 SKIA  157 (162)
Q Consensus       154 ~~~~  157 (162)
                      .+.+
T Consensus       183 ~~~i  186 (193)
T 2oil_A          183 LKEI  186 (193)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8765

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=99.59  E-value=7.8e-16  Score=103.56  Aligned_cols=112  Identities=14%  Similarity=0.173  Sum_probs=67.6

Q ss_pred             CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHH-HHHH---hCCceEEEEe
Q 031293           30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELIS-LMER---SQTKYQVVLT  104 (162)
Q Consensus        30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~-~l~~---~~~~~ivv~n  104 (162)
                      +.++.++||||+..          +......++.   .+|++++|+|+..+.+-.. ..++. .+..   .++|+++|+|
T Consensus        72 ~~~~~i~Dt~G~~~----------~~~~~~~~~~---~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~N  138 (192)
T 2b6h_A           72 NICFTVWDVGGQDK----------IRPLWRHYFQ---NTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFAN  138 (192)
T ss_dssp             TEEEEEEECC---------------CTTHHHHHH---TCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEE
T ss_pred             CEEEEEEECCCCHh----------HHHHHHHHhc---cCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEE
Confidence            34689999999822          1223344443   4599999999976422111 12222 2221   2689999999


Q ss_pred             ccCCCCcHHHHHHHHHHHHHHHh--cCCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293          105 KTDTVFPIDVARRAMQIEESLKA--NNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR  158 (162)
Q Consensus       105 K~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~  158 (162)
                      |+|+.+.....+    +.+.+..  ......+++++||++|.|+++++++|.+.+.
T Consensus       139 K~Dl~~~~~~~~----i~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~  190 (192)
T 2b6h_A          139 KQDMPNAMPVSE----LTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELS  190 (192)
T ss_dssp             CTTSTTCCCHHH----HHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHTT
T ss_pred             CCCCCCCCCHHH----HHHHhCcccccCCceEEEECcCCCcCCHHHHHHHHHHHHh
Confidence            999975422222    2222221  1112247899999999999999999987653

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=99.59  E-value=8.3e-16  Score=103.26  Aligned_cols=136  Identities=17%  Similarity=0.152  Sum_probs=81.6

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEe-CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCC
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKL-GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW   79 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~-~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~   79 (162)
                      |+|+|++. ......++.+.+.  ..... +.++.++||||+...          ......+   .+.+|++++|+|+..
T Consensus        39 li~~l~~~-~~~~~~~t~~~~~--~~~~~~~~~~~i~Dt~G~~~~----------~~~~~~~---~~~~d~~i~v~d~~~  102 (190)
T 1m2o_B           39 LLHMLKND-RLATLQPTWHPTS--EELAIGNIKFTTFDLGGHIQA----------RRLWKDY---FPEVNGIVFLVDAAD  102 (190)
T ss_dssp             HHHHHHHS-CCCCCCCCCSCEE--EEEEETTEEEEEEECCCSGGG----------TTSGGGG---CTTCCEEEEEEETTC
T ss_pred             HHHHHhcC-CCCccccCCCCCe--EEEEECCEEEEEEECCCCHHH----------HHHHHHH---HhcCCEEEEEEECCC
Confidence            46777766 3344444555432  22333 456899999999332          1122222   345699999999986


Q ss_pred             CCCccH-HHHHHHH-H---HhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcC---------CCCCCeEEeecCCCCC
Q 031293           80 GVKPRD-HELISLM-E---RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANN---------SLVQPVMMVSSKSGAG  145 (162)
Q Consensus        80 ~~~~~~-~~~~~~l-~---~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~---------~~~~~i~~~Sa~~~~g  145 (162)
                      +.+-.. ..++..+ .   ..+.|+++|+||+|+......    +.+.+.+....         ....+++++||++|.|
T Consensus       103 ~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g  178 (190)
T 1m2o_B          103 PERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSE----AELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNG  178 (190)
T ss_dssp             GGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCH----HHHHHHTTCSSCCC---CCSSCCEEEEECBTTTTBS
T ss_pred             hHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCCCH----HHHHHHhCCccccccccccccceEEEEEeECCcCCC
Confidence            532111 1222222 2   246899999999999752222    22333333211         1234799999999999


Q ss_pred             HHHHHHHHHHh
Q 031293          146 IRSLRTVLSKI  156 (162)
Q Consensus       146 ~~~l~~~i~~~  156 (162)
                      +++++++|.+.
T Consensus       179 i~~l~~~l~~~  189 (190)
T 1m2o_B          179 YLEAFQWLSQY  189 (190)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHHHHHHhh
Confidence            99999999764

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=99.59  E-value=7.6e-15  Score=99.31  Aligned_cols=137  Identities=12%  Similarity=0.033  Sum_probs=81.6

Q ss_pred             ChhcccCCCCceeccCCCCcceEEE--EEEeCC---ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEe
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTIN--FFKLGT---KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLI   75 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~--~~~~~~---~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vi   75 (162)
                      |+|+|++.. .  ....++++.+..  .+..+.   .+.++||||+...          ......++.   .+|++++|+
T Consensus        30 li~~l~~~~-~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----------~~~~~~~~~---~~~~~i~v~   93 (206)
T 2bov_A           30 LTLQFMYDE-F--VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY----------AAIRDNYFR---SGEGFLCVF   93 (206)
T ss_dssp             HHHHHHHSC-C--CTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCC----------HHHHHHHHH---HCSEEEEEE
T ss_pred             HHHHHHhCC-C--CCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhh----------HHHHHHHHh---hCCEEEEEE
Confidence            467777662 1  233344433222  233333   5889999998332          333444443   349999999


Q ss_pred             ecCCCCCccH-HHHHHHHHH----hCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHH
Q 031293           76 DTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLR  150 (162)
Q Consensus        76 d~~~~~~~~~-~~~~~~l~~----~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~  150 (162)
                      |+....+-.. ..++..+..    .++|+++|+||+|+.+.....  .+...+.....+   .+++++||++|.|+++++
T Consensus        94 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~--~~~~~~~~~~~~---~~~~~~Sa~~g~gi~~l~  168 (206)
T 2bov_A           94 SITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVS--VEEAKNRAEQWN---VNYVETSAKTRANVDKVF  168 (206)
T ss_dssp             ETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSC--HHHHHHHHHHHT---CEEEEECTTTCTTHHHHH
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCcccccccc--HHHHHHHHHHhC---CeEEEEeCCCCCCHHHHH
Confidence            9876321111 122333322    268999999999997432211  112233333333   489999999999999999


Q ss_pred             HHHHHhhh
Q 031293          151 TVLSKIAR  158 (162)
Q Consensus       151 ~~i~~~~~  158 (162)
                      .+|.+.+.
T Consensus       169 ~~l~~~i~  176 (206)
T 2bov_A          169 FDLMREIR  176 (206)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99987654

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=99.59  E-value=1.5e-14  Score=94.21  Aligned_cols=108  Identities=17%  Similarity=0.172  Sum_probs=69.1

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHHHHHHh----CCceEEEEecc
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS----QTKYQVVLTKT  106 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~~l~~~----~~~~ivv~nK~  106 (162)
                      .+.++||||+...          ......++.   .+|++++++|+..+.+... ..++..+...    ++|+++|+||+
T Consensus        52 ~~~~~D~~G~~~~----------~~~~~~~~~---~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~  118 (166)
T 2ce2_X           52 LLDILDTAGQEEY----------SAMRDQYMR---TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKS  118 (166)
T ss_dssp             EEEEEECCCCSSC----------CHHHHHHHH---HCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECT
T ss_pred             EEEEEECCCchhh----------hHHHHHhhc---cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEch
Confidence            4789999998432          223334433   3499999999875322111 2233333322    68999999999


Q ss_pred             CCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293          107 DTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR  158 (162)
Q Consensus       107 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~  158 (162)
                      |+.+.....+   ..++.....+   .+++++||++|.|+++++.+|.+.+.
T Consensus       119 Dl~~~~~~~~---~~~~~~~~~~---~~~~~~Sa~~~~gi~~l~~~l~~~~~  164 (166)
T 2ce2_X          119 DLAARTVESR---QAQDLARSYG---IPYIETSAKTRQGVEDAFYTLVREIR  164 (166)
T ss_dssp             TCSCCCSCHH---HHHHHHHHHT---CCEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred             hhhhcccCHH---HHHHHHHHcC---CeEEEecCCCCCCHHHHHHHHHHHHH
Confidence            9875322222   2222233333   48999999999999999999988654

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=99.59  E-value=2.6e-15  Score=98.03  Aligned_cols=109  Identities=16%  Similarity=0.089  Sum_probs=68.9

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHHHHHH----hCCceEEEEecc
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKT  106 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~~l~~----~~~~~ivv~nK~  106 (162)
                      .+.++||||+...          ......++.   .+|++++++|...+.+... ..++..+..    .+.|+++|+||+
T Consensus        52 ~~~l~D~~G~~~~----------~~~~~~~~~---~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~  118 (167)
T 1kao_A           52 VLEILDTAGTEQF----------ASMRDLYIK---NGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKV  118 (167)
T ss_dssp             EEEEEECCCTTCC----------HHHHHHHHH---HCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECG
T ss_pred             EEEEEECCCchhh----------HHHHHHHhc---cCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECC
Confidence            3889999998322          333444443   3489999999876321111 112222222    368999999999


Q ss_pred             CCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293          107 DTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR  158 (162)
Q Consensus       107 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~  158 (162)
                      |+.+......  +..++.....+   .+++++||++|.|+++++++|.+.+.
T Consensus       119 Dl~~~~~~~~--~~~~~~~~~~~---~~~~~~Sa~~~~gi~~l~~~l~~~~~  165 (167)
T 1kao_A          119 DLESEREVSS--SEGRALAEEWG---CPFMETSAKSKTMVDELFAEIVRQMN  165 (167)
T ss_dssp             GGGGGCCSCH--HHHHHHHHHHT---SCEEEECTTCHHHHHHHHHHHHHHHH
T ss_pred             cccccccCCH--HHHHHHHHHhC---CCEEEecCCCCcCHHHHHHHHHHHHh
Confidence            9864322111  12222233233   48999999999999999999988764

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=99.59  E-value=2.2e-15  Score=102.07  Aligned_cols=137  Identities=10%  Similarity=0.043  Sum_probs=79.6

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEE--EEeC---CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEe
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINF--FKLG---TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLI   75 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~--~~~~---~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vi   75 (162)
                      |+|+|++.. .. ....|..+.+...  ...+   ..+.++||||+...          ......+   ...+|++++|+
T Consensus        24 li~~l~~~~-~~-~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----------~~~~~~~---~~~~d~~i~v~   88 (207)
T 1vg8_A           24 LMNQYVNKK-FS-NQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERF----------QSLGVAF---YRGADCCVLVF   88 (207)
T ss_dssp             HHHHHHHSC-CC-SSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGG----------SCSCCGG---GTTCSEEEEEE
T ss_pred             HHHHHHcCC-CC-CCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHH----------HHhHHHH---HhCCcEEEEEE
Confidence            467777762 22 2223333333332  3332   25899999998321          1111222   24569999999


Q ss_pred             ecCCCCCccH-HHHHHHHH-H------hCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHH
Q 031293           76 DTKWGVKPRD-HELISLME-R------SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIR  147 (162)
Q Consensus        76 d~~~~~~~~~-~~~~~~l~-~------~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~  147 (162)
                      |+..+.+-.. ..++..+. .      .++|+++|+||+|+.+......   ...+.....  ...+++++||++|.|++
T Consensus        89 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~---~~~~~~~~~--~~~~~~~~Sa~~g~gi~  163 (207)
T 1vg8_A           89 DVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATK---RAQAWCYSK--NNIPYFETSAKEAINVE  163 (207)
T ss_dssp             ETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHH---HHHHHHHHT--TSCCEEECBTTTTBSHH
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHH---HHHHHHHhc--CCceEEEEeCCCCCCHH
Confidence            9876422111 12222222 1      3689999999999974322111   222222212  22589999999999999


Q ss_pred             HHHHHHHHhh
Q 031293          148 SLRTVLSKIA  157 (162)
Q Consensus       148 ~l~~~i~~~~  157 (162)
                      +++++|.+.+
T Consensus       164 ~l~~~l~~~~  173 (207)
T 1vg8_A          164 QAFQTIARNA  173 (207)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999998755

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=99.59  E-value=3.5e-16  Score=114.65  Aligned_cols=123  Identities=16%  Similarity=0.138  Sum_probs=82.2

Q ss_pred             CceEEEcCCCCccccc---CHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHH-HHHHHHHhCCceEEEEecc
Q 031293           31 TKLCLVDLPGYGFAYA---KEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHE-LISLMERSQTKYQVVLTKT  106 (162)
Q Consensus        31 ~~~~ivDtpG~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~-~~~~l~~~~~~~ivv~nK~  106 (162)
                      .++.+|||||++....   +....+.+..++..|+...  .+++++++|+..++...+.. ++..+...+.|+++|+||+
T Consensus       130 ~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~iiL~v~~a~~~~~~~~~~~i~~~~~~~~~~~i~V~NK~  207 (353)
T 2x2e_A          130 LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKE--NCLILAVSPANSDLANSDALKVAKEVDPQGQRTIGVITKL  207 (353)
T ss_dssp             CSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTST--TEEEEEEEETTSCGGGCHHHHHHHHHCTTCTTEEEEEECG
T ss_pred             CCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCC--CeEEEEEecCCCccchhHHHHHHHHhCcCCCceEEEeccc
Confidence            5699999999976432   3334456677777887643  36888888988776665543 6666666689999999999


Q ss_pred             CCCCcHH-HHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293          107 DTVFPID-VARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR  158 (162)
Q Consensus       107 Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~  158 (162)
                      |+.++.. ...   .++.........+.+++++||+++.|++++++++.+.-+
T Consensus       208 Dl~~~~~~~~~---~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~e~~  257 (353)
T 2x2e_A          208 DLMDEGTDARD---VLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAERK  257 (353)
T ss_dssp             GGSCTTCCCHH---HHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHHHHH
T ss_pred             cccCcchhHHH---HHhCCcccccCCceEEEeCCcccccccccHHHHHHHHHH
Confidence            9985432 111   111100000111246888999999999999999976443

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.58  E-value=7.6e-16  Score=111.81  Aligned_cols=137  Identities=18%  Similarity=0.216  Sum_probs=81.1

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT   77 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~   77 (162)
                      |+|+|++.. ..  +..|  |....+..+   +.++.++||||+.          .+......++.   .+|++++|+|+
T Consensus       181 Ll~~l~~~~-~~--~~~p--T~~~~~~~~~~~~~~l~i~Dt~G~~----------~~~~~~~~~~~---~ad~vilV~D~  242 (329)
T 3o47_A          181 ILYKLKLGE-IV--TTIP--TIGFNVETVEYKNISFTVWDVGGQD----------KIRPLWRHYFQ---NTQGLIFVVDS  242 (329)
T ss_dssp             HHHHTCSSC-CE--EEEE--ETTEEEEEEEETTEEEEEEECC---------------CCSHHHHHT---TEEEEEEEEET
T ss_pred             HHHHHhCCC-CC--Cccc--ccceEEEEEecCcEEEEEEECCCCH----------hHHHHHHHHhc---cCCEEEEEEEC
Confidence            467777663 22  2223  333333322   4469999999972          22223444443   46999999999


Q ss_pred             CCCCC--ccHHHHHHHHHHh---CCceEEEEeccCCCCcHHHHHHHHHHHHHHHhc--CCCCCCeEEeecCCCCCHHHHH
Q 031293           78 KWGVK--PRDHELISLMERS---QTKYQVVLTKTDTVFPIDVARRAMQIEESLKAN--NSLVQPVMMVSSKSGAGIRSLR  150 (162)
Q Consensus        78 ~~~~~--~~~~~~~~~l~~~---~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~Sa~~~~g~~~l~  150 (162)
                      ...-+  ....++...+...   ++|+++|+||+|+.+.....+    +...+...  .....+++++||++|.|+++++
T Consensus       243 ~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~----i~~~~~~~~~~~~~~~~~~vSAk~g~gi~el~  318 (329)
T 3o47_A          243 NDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAE----ITDKLGLHSLRHRNWYIQATCATSGDGLYEGL  318 (329)
T ss_dssp             TCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHH----HHHHHTCTTCCSSCEEEEECBTTTTBTHHHHH
T ss_pred             CchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCHHH----HHHHhchhhhhcCCCEEEEEECCCCcCHHHHH
Confidence            65432  2222333343332   789999999999986443322    22222221  1123479999999999999999


Q ss_pred             HHHHHhhhh
Q 031293          151 TVLSKIARF  159 (162)
Q Consensus       151 ~~i~~~~~~  159 (162)
                      ++|.+.+..
T Consensus       319 ~~l~~~l~~  327 (329)
T 3o47_A          319 DWLSNQLRN  327 (329)
T ss_dssp             HHHHHHHTC
T ss_pred             HHHHHHHHh
Confidence            999987653

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=99.58  E-value=6.3e-15  Score=98.05  Aligned_cols=112  Identities=13%  Similarity=-0.016  Sum_probs=71.4

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHH--HHHHHHHHh--CCceEEEEeccC
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDH--ELISLMERS--QTKYQVVLTKTD  107 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~--~~~~~l~~~--~~~~ivv~nK~D  107 (162)
                      .+.++||||+...          ......   ..+.+|++++|+|+..+.+-...  .++..+...  ++|+++|+||+|
T Consensus        54 ~~~i~Dt~G~~~~----------~~~~~~---~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D  120 (186)
T 1mh1_A           54 NLGLWDTAGQEDY----------DRLRPL---SYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLD  120 (186)
T ss_dssp             EEEEECCCCSGGG----------TTTGGG---GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHH
T ss_pred             EEEEEECCCCHhH----------HHHHHH---hccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEccc
Confidence            4779999999221          111222   23557999999998764322222  244555544  789999999999


Q ss_pred             CCCcHHHHHHH----------HHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293          108 TVFPIDVARRA----------MQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR  158 (162)
Q Consensus       108 l~~~~~~~~~~----------~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~  158 (162)
                      +.+.....+..          +...+.....+  ..+++++||++|.|+++++.++.+.+.
T Consensus       121 l~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~~~~~~~Sa~~g~gi~~l~~~l~~~~~  179 (186)
T 1mh1_A          121 LRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG--AVKYLECSALTQRGLKTVFDEAIRAVL  179 (186)
T ss_dssp             HHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTT--CSEEEECCTTTCTTHHHHHHHHHHHHS
T ss_pred             ccccchhhhhhcccccccCCHHHHHHHHHhcC--CcEEEEecCCCccCHHHHHHHHHHHHh
Confidence            97543321111          12222233232  248999999999999999999988663

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=99.58  E-value=8.3e-15  Score=96.10  Aligned_cols=110  Identities=13%  Similarity=0.004  Sum_probs=67.3

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHH-HHHHHHhcCcccceeEEEeecCCCCCccH-HHHHHHHHHh----CCceEEEEec
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEE-LVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS----QTKYQVVLTK  105 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~~l~~~----~~~~ivv~nK  105 (162)
                      .+.++||||+...          .. +...++.   .+|++++|+|...+.+-.. ..++..+...    ++|+++|+||
T Consensus        52 ~~~i~D~~g~~~~----------~~~~~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK  118 (169)
T 3q85_A           52 TLIVYDIWEQGDA----------GGWLQDHCLQ---TGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNK  118 (169)
T ss_dssp             EEEEECCCCC------------------CHHHH---HCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEEC
T ss_pred             EEEEEECCCcccc----------chhhhhhhhc---cCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeC
Confidence            4789999999322          11 1222222   3599999999876321111 1223333222    6899999999


Q ss_pred             cCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhhh
Q 031293          106 TDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARF  159 (162)
Q Consensus       106 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~~  159 (162)
                      +|+.+......  +...+.....+   .+++++||++|.|++++++++.+.+..
T Consensus       119 ~Dl~~~~~~~~--~~~~~~~~~~~---~~~~~~Sa~~~~~v~~l~~~l~~~i~~  167 (169)
T 3q85_A          119 SDLARSREVSL--EEGRHLAGTLS---CKHIETSAALHHNTRELFEGAVRQIRL  167 (169)
T ss_dssp             TTCGGGCCSCH--HHHHHHHHHTT---CEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             cchhhcccCCH--HHHHHHHHHcC---CcEEEecCccCCCHHHHHHHHHHHHHh
Confidence            99863322111  12223333333   489999999999999999999987654

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=99.58  E-value=5.9e-16  Score=102.85  Aligned_cols=139  Identities=12%  Similarity=0.003  Sum_probs=79.2

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEeC---CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKLG---TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT   77 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~~---~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~   77 (162)
                      |+|+|++........+..+.+. ......+   .++.++||||+...          ......+   .+.+|++++|+|.
T Consensus        22 li~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~----------~~~~~~~---~~~~~~~i~v~d~   87 (181)
T 3t5g_A           22 LTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEY----------SIFPQTY---SIDINGYILVYSV   87 (181)
T ss_dssp             HHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTT----------CCCCGGG---TTTCSEEEEEEET
T ss_pred             HHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhh----------hHHHHHH---HhcCCEEEEEEEC
Confidence            4677775522233333333333 2223333   24789999998332          1111222   2346999999998


Q ss_pred             CCCCCccH-HHHHHHH----HHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHH
Q 031293           78 KWGVKPRD-HELISLM----ERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTV  152 (162)
Q Consensus        78 ~~~~~~~~-~~~~~~l----~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~  152 (162)
                      ....+-.. ..++..+    ...++|+++|+||+|+.+......  +..++.....+   .+++++||++|.|+++++.+
T Consensus        88 ~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~--~~~~~~~~~~~---~~~~~~Sa~~~~~v~~l~~~  162 (181)
T 3t5g_A           88 TSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISY--EEGKALAESWN---AAFLESSAKENQTAVDVFRR  162 (181)
T ss_dssp             TCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCH--HHHHHHHHHTT---CEEEECCTTSHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecH--HHHHHHHHHhC---CcEEEEecCCCCCHHHHHHH
Confidence            75321111 1122222    223689999999999864332211  12333334333   48999999999999999999


Q ss_pred             HHHhhh
Q 031293          153 LSKIAR  158 (162)
Q Consensus       153 i~~~~~  158 (162)
                      |.+.+.
T Consensus       163 l~~~~~  168 (181)
T 3t5g_A          163 IILEAE  168 (181)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            988664

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=99.58  E-value=7.5e-15  Score=96.00  Aligned_cols=109  Identities=16%  Similarity=0.050  Sum_probs=68.6

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHHHHHH----hCCceEEEEecc
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKT  106 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~~l~~----~~~~~ivv~nK~  106 (162)
                      ++.++||||+...          ......++.   .+|++++|+|+..+.+-.. ..++..+..    .++|+++|+||+
T Consensus        52 ~~~l~D~~G~~~~----------~~~~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~  118 (167)
T 1c1y_A           52 MLEILDTAGTEQF----------TAMRDLYMK---NGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKC  118 (167)
T ss_dssp             EEEEEEECSSCSS----------TTHHHHHHH---HCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECT
T ss_pred             EEEEEECCChHHH----------HHHHHHHhc---cCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECc
Confidence            4889999998332          223334433   2499999999875321111 123333322    368999999999


Q ss_pred             CCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293          107 DTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  157 (162)
Q Consensus       107 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~  157 (162)
                      |+.+.....  .+..++......  ..+++++||++|.|+++++++|.+.+
T Consensus       119 Dl~~~~~~~--~~~~~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l~~~i  165 (167)
T 1c1y_A          119 DLEDERVVG--KEQGQNLARQWC--NCAFLESSAKSKINVNEIFYDLVRQI  165 (167)
T ss_dssp             TCGGGCCSC--HHHHHHHHHHTT--SCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             cccccccCC--HHHHHHHHHHcc--CCcEEEecCCCCCCHHHHHHHHHHHH
Confidence            996432211  112223333331  25899999999999999999998765

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=99.58  E-value=1.2e-15  Score=100.89  Aligned_cols=110  Identities=14%  Similarity=0.124  Sum_probs=69.2

Q ss_pred             CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHHHHHH-----hCCc-eEEEE
Q 031293           31 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER-----SQTK-YQVVL  103 (162)
Q Consensus        31 ~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~~l~~-----~~~~-~ivv~  103 (162)
                      .++.++||||+...          ......+++   .+|++++|+|+..+.+-.. ..++..+..     .+.| +++|+
T Consensus        56 ~~~~~~Dt~G~~~~----------~~~~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~  122 (178)
T 2hxs_A           56 VTLQIWDIGGQTIG----------GKMLDKYIY---GAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVG  122 (178)
T ss_dssp             EEEEEEECTTCCTT----------CTTHHHHHT---TCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEE
T ss_pred             EEEEEEECCCCccc----------cchhhHHHh---hCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEE
Confidence            35899999998332          222334433   4599999999876432111 123333433     1566 79999


Q ss_pred             eccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293          104 TKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR  158 (162)
Q Consensus       104 nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~  158 (162)
                      ||+|+.+......  +...+.....+   .+++++||++|.|+++++.+|.+.+.
T Consensus       123 nK~Dl~~~~~~~~--~~~~~~~~~~~---~~~~~~Sa~~~~gi~~l~~~l~~~~~  172 (178)
T 2hxs_A          123 NKIDLEHMRTIKP--EKHLRFCQENG---FSSHFVSAKTGDSVFLCFQKVAAEIL  172 (178)
T ss_dssp             ECGGGGGGCSSCH--HHHHHHHHHHT---CEEEEECTTTCTTHHHHHHHHHHHHT
T ss_pred             EccccccccccCH--HHHHHHHHHcC---CcEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            9999964221110  12222233232   48999999999999999999988664

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.58  E-value=4.1e-14  Score=103.76  Aligned_cols=145  Identities=20%  Similarity=0.218  Sum_probs=92.3

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT   77 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~   77 (162)
                      |+|+|++.  ...++..|++|.+......   +..+.++||||+........  +...  ......-...+|.+++|+|+
T Consensus       183 Lin~L~~~--~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~--~~~~--~~~~~~~~~~ad~illV~D~  256 (357)
T 2e87_A          183 LLKALTTA--KPEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISER--NEIE--KQAILALRYLGNLIIYIFDP  256 (357)
T ss_dssp             HHHHHCSS--CCEEECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTS--CHHH--HHHHHGGGGTCSEEEEEECT
T ss_pred             HHHHHhCC--CCccCCCCCeeeceeEEEEEecCceEEEEeCCCccccchhhh--hHHH--HHHHHHHHhcCCEEEEEEeC
Confidence            57888888  2557788888887665433   34589999999854321110  0001  01111122346999999997


Q ss_pred             CCCC--CccH-HHHHHHHHH-h-CCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHH
Q 031293           78 KWGV--KPRD-HELISLMER-S-QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTV  152 (162)
Q Consensus        78 ~~~~--~~~~-~~~~~~l~~-~-~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~  152 (162)
                      +.+.  .... ..++..+.. . ++|+++|+||+|+.......+    ..+.+...+   .+++++||++|+|+++++++
T Consensus       257 s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~~~~~~~~----~~~~~~~~~---~~~~~iSA~~g~gi~~l~~~  329 (357)
T 2e87_A          257 SEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVADEENIKR----LEKFVKEKG---LNPIKISALKGTGIDLVKEE  329 (357)
T ss_dssp             TCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTCCHHHHHH----HHHHHHHTT---CCCEECBTTTTBTHHHHHHH
T ss_pred             CccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccCChHHHHH----HHHHHHhcC---CCeEEEeCCCCcCHHHHHHH
Confidence            6543  2222 234444433 2 799999999999986654432    222333232   58999999999999999999


Q ss_pred             HHHhhh
Q 031293          153 LSKIAR  158 (162)
Q Consensus       153 i~~~~~  158 (162)
                      |.+.+.
T Consensus       330 i~~~l~  335 (357)
T 2e87_A          330 IIKTLR  335 (357)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            987664

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=99.58  E-value=3.5e-15  Score=99.25  Aligned_cols=108  Identities=18%  Similarity=0.152  Sum_probs=67.9

Q ss_pred             eEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHHHHH----HhCCceEEEEeccC
Q 031293           33 LCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLME----RSQTKYQVVLTKTD  107 (162)
Q Consensus        33 ~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~~l~----~~~~~~ivv~nK~D  107 (162)
                      +.++||||+...          ......+++   .+|++++|+|...+.+-.. ..++..+.    ..++|+++|+||+|
T Consensus        68 l~i~Dt~G~~~~----------~~~~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D  134 (183)
T 3kkq_A           68 LDVLDTAGQEEF----------SAMREQYMR---TGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVD  134 (183)
T ss_dssp             EEEEECCSCGGG----------CSSHHHHHH---HCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTT
T ss_pred             EEEEECCCchhh----------HHHHHHHHh---cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCC
Confidence            667999998322          222333333   3499999999876421111 12222222    24689999999999


Q ss_pred             CCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecC-CCCCHHHHHHHHHHhhh
Q 031293          108 TVFPIDVARRAMQIEESLKANNSLVQPVMMVSSK-SGAGIRSLRTVLSKIAR  158 (162)
Q Consensus       108 l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~-~~~g~~~l~~~i~~~~~  158 (162)
                      +.+......  +..++.....+   .+++++||+ +|.|+++++.+|.+.+.
T Consensus       135 l~~~~~v~~--~~~~~~~~~~~---~~~~~~Sa~~~~~~v~~l~~~l~~~i~  181 (183)
T 3kkq_A          135 LMHLRKVTR--DQGKEMATKYN---IPYIETSAKDPPLNVDKTFHDLVRVIR  181 (183)
T ss_dssp             CSTTCCSCH--HHHHHHHHHHT---CCEEEEBCSSSCBSHHHHHHHHHHHHH
T ss_pred             chhccCcCH--HHHHHHHHHhC---CeEEEeccCCCCCCHHHHHHHHHHHHh
Confidence            875322111  12223333333   489999999 99999999999988664

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=99.57  E-value=7.9e-15  Score=115.68  Aligned_cols=118  Identities=15%  Similarity=0.194  Sum_probs=77.4

Q ss_pred             CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHH-HHHHhCCceEEEEeccCCC
Q 031293           31 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELIS-LMERSQTKYQVVLTKTDTV  109 (162)
Q Consensus        31 ~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~-~l~~~~~~~ivv~nK~Dl~  109 (162)
                      ..+.+|||||++....       .......++   ..+|++++|+|+..+.+..+...+. .+...+.|+++|+||+|+.
T Consensus       174 ~~l~LiDTPGl~~~~~-------~~~~~~~~i---~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~~~~~iiiVlNK~Dl~  243 (695)
T 2j69_A          174 KGIEIVDSPGLNDTEA-------RNELSLGYV---NNCHAILFVMRASQPCTLGERRYLENYIKGRGLTVFFLVNAWDQV  243 (695)
T ss_dssp             TTEEEEECCCHHHHHT-------CHHHHTHHH---HSSSEEEEEEETTSTTCHHHHHHHHHHTTTSCCCEEEEEECGGGG
T ss_pred             CCeEEEECCCCCchhh-------HHHHHHHHH---HhCCEEEEEEeCCCccchhHHHHHHHHHHhhCCCEEEEEECcccc
Confidence            4699999999854211       122334444   3469999999999887776665553 4555578999999999987


Q ss_pred             CcH--------HHHHHHHHH----HHHHHhc-C-----CCCCCeEEeecC--------------CCCCHHHHHHHHHHhh
Q 031293          110 FPI--------DVARRAMQI----EESLKAN-N-----SLVQPVMMVSSK--------------SGAGIRSLRTVLSKIA  157 (162)
Q Consensus       110 ~~~--------~~~~~~~~~----~~~~~~~-~-----~~~~~i~~~Sa~--------------~~~g~~~l~~~i~~~~  157 (162)
                      ...        ......+.+    ...+... +     ....+++++||+              ++.|+++++.++.+.+
T Consensus       244 ~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~~~~Gi~~L~~~L~~~l  323 (695)
T 2j69_A          244 RESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQADLDGTGFPKFMDSLNTFL  323 (695)
T ss_dssp             GGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCCCTTSSHHHHHHHHHHHH
T ss_pred             cccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCchhhhhccCHHHHHHHHHHHH
Confidence            442        122222222    2223211 1     122489999999              9999999999998755


Q ss_pred             h
Q 031293          158 R  158 (162)
Q Consensus       158 ~  158 (162)
                      .
T Consensus       324 ~  324 (695)
T 2j69_A          324 T  324 (695)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.57  E-value=7.8e-15  Score=99.68  Aligned_cols=111  Identities=13%  Similarity=0.047  Sum_probs=70.6

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCC--ccHHHHHHHHHHh--CCceEEEEeccC
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVK--PRDHELISLMERS--QTKYQVVLTKTD  107 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~--~~~~~~~~~l~~~--~~~~ivv~nK~D  107 (162)
                      .+.++||||+...          ......   ....+|++++|+|...+.+  .....++..+...  ++|+++|+||+|
T Consensus        74 ~~~i~Dt~G~~~~----------~~~~~~---~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D  140 (207)
T 2fv8_A           74 ELALWDTAGQEDY----------DRLRPL---SYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKD  140 (207)
T ss_dssp             EEEEEECTTCTTC----------TTTGGG---GCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGG
T ss_pred             EEEEEECCCcHHH----------HHHHHh---hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchh
Confidence            5889999998322          111222   2345699999999876321  1112344555544  789999999999


Q ss_pred             CCCcHHHHHHHH----------HHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293          108 TVFPIDVARRAM----------QIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  157 (162)
Q Consensus       108 l~~~~~~~~~~~----------~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~  157 (162)
                      +.+.....+...          ...+.....+  ..+++++||++|.|+++++++|.+.+
T Consensus       141 l~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~~~~~~~SA~~g~gi~el~~~l~~~i  198 (207)
T 2fv8_A          141 LRSDEHVRTELARMKQEPVRTDDGRAMAVRIQ--AYDYLECSAKTKEGVREVFETATRAA  198 (207)
T ss_dssp             GGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTT--CSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             hhccccchhhhhhcccCCCCHHHHHHHHHhcC--CCEEEEeeCCCCCCHHHHHHHHHHHH
Confidence            975543322111          1112222222  23789999999999999999998765

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=99.56  E-value=2.1e-14  Score=105.48  Aligned_cols=150  Identities=19%  Similarity=0.185  Sum_probs=84.4

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEE--EEe-CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINF--FKL-GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT   77 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~--~~~-~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~   77 (162)
                      |+|+|++.  ...+++.+++|++...  ..+ +..+.++||||+... .+....+.+    ...+.....+|++++|+|+
T Consensus       195 Lln~L~~~--~~~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~-lp~~lve~f----~~tl~~~~~aD~il~VvD~  267 (364)
T 2qtf_A          195 LFNSLTGL--TQKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRG-IPPQIVDAF----FVTLSEAKYSDALILVIDS  267 (364)
T ss_dssp             HHHHHHCC-------------CCSCEEEEEETTEEEEEEECCCBCSS-CCGGGHHHH----HHHHHGGGGSSEEEEEEET
T ss_pred             HHHHHHCC--CccccCCcccccCCEEEEEEECCEEEEEEeCCCchhc-CCHHHHHHH----HHHHHHHHhCCEEEEEEEC
Confidence            57899988  3467888998876543  333 456899999997332 111122222    2334455677999999998


Q ss_pred             CCCCCccHH---HHHHHHHH---hCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHH
Q 031293           78 KWGVKPRDH---ELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRT  151 (162)
Q Consensus        78 ~~~~~~~~~---~~~~~l~~---~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~  151 (162)
                      +.+......   .+...+..   .+.|+++|.||+|+.+.. ..+..+..............+++++||++|.|++++++
T Consensus       268 s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~-~~~~~~~~~~l~~~l~~~~~~~~~~SA~~g~gi~~L~~  346 (364)
T 2qtf_A          268 TFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGD-LYKKLDLVEKLSKELYSPIFDVIPISALKRTNLELLRD  346 (364)
T ss_dssp             TSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSC-HHHHHHHHHHHHHHHCSCEEEEEECBTTTTBSHHHHHH
T ss_pred             CCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCch-HHHHHHHHHHHHHHhcCCCCcEEEEECCCCcCHHHHHH
Confidence            765311111   12233433   368999999999998643 22212222122222201113679999999999999999


Q ss_pred             HHHHhhh
Q 031293          152 VLSKIAR  158 (162)
Q Consensus       152 ~i~~~~~  158 (162)
                      +|.+.+.
T Consensus       347 ~I~~~l~  353 (364)
T 2qtf_A          347 KIYQLAT  353 (364)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhc
Confidence            9988664

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=99.56  E-value=1.6e-14  Score=97.39  Aligned_cols=113  Identities=12%  Similarity=0.064  Sum_probs=70.6

Q ss_pred             CceEEEcCCCCcccccCHHHHHHHHHHH---HHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHh-----CCceEEE
Q 031293           31 TKLCLVDLPGYGFAYAKEEVKDAWEELV---KEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERS-----QTKYQVV  102 (162)
Q Consensus        31 ~~~~ivDtpG~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~-----~~~~ivv  102 (162)
                      .++.+|||||+...          ....   ..+++   .+|++++|+|+..+.......+..++...     ++|+++|
T Consensus        69 ~~l~i~Dt~G~~~~----------~~~~~~~~~~~~---~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv  135 (196)
T 3llu_A           69 VNFQIWDFPGQMDF----------FDPTFDYEMIFR---GTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVF  135 (196)
T ss_dssp             CCEEEEECCSSCCT----------TCTTCCHHHHHH---TCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEE
T ss_pred             eEEEEEECCCCHHH----------Hhhhhhcccccc---cCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEE
Confidence            46999999998331          1111   34443   35999999999876323333344444432     6899999


Q ss_pred             EeccCCCCcHHHH----HHHHHHHHHHHhcC--CCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293          103 LTKTDTVFPIDVA----RRAMQIEESLKANN--SLVQPVMMVSSKSGAGIRSLRTVLSKIA  157 (162)
Q Consensus       103 ~nK~Dl~~~~~~~----~~~~~~~~~~~~~~--~~~~~i~~~Sa~~~~g~~~l~~~i~~~~  157 (162)
                      +||+|+.+.....    .......+.+....  ....+++++||++ .|+++++..+.+.+
T Consensus       136 ~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~e~Sa~~-~~v~~~f~~l~~~l  195 (196)
T 3llu_A          136 IHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSFYLTSIYD-HSIFEAFSKVVQKL  195 (196)
T ss_dssp             EECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSCEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred             EeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCCcceEEEEech-hhHHHHHHHHHHHh
Confidence            9999998643221    11111112222211  1235899999999 99999999998653

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=99.56  E-value=9.4e-15  Score=98.05  Aligned_cols=108  Identities=14%  Similarity=0.200  Sum_probs=72.4

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHH----HHHHH-----hCCceEEE
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELI----SLMER-----SQTKYQVV  102 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~----~~l~~-----~~~~~ivv  102 (162)
                      ++.++||||+...          ......++   +.+|++++|+|+..+....+.+.+    .++..     .++|+++|
T Consensus        75 ~~~i~Dt~G~~~~----------~~~~~~~~---~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv  141 (198)
T 3t1o_A           75 RFHLYTVPGQVFY----------NASRKLIL---RGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQ  141 (198)
T ss_dssp             EEEEEECCSCCSC----------SHHHHHHT---TTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEE
T ss_pred             EEEEEeCCChHHH----------HHHHHHHH---hcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEE
Confidence            4889999998322          33344444   346999999999854333333333    33333     36899999


Q ss_pred             EeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293          103 LTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR  158 (162)
Q Consensus       103 ~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~  158 (162)
                      +||+|+.+....    +.+++.+...+.  .+++++||++|.|+++++++|.+.+.
T Consensus       142 ~NK~Dl~~~~~~----~~~~~~~~~~~~--~~~~~~Sa~~~~gv~~l~~~l~~~i~  191 (198)
T 3t1o_A          142 VNKRDLPDALPV----EMVRAVVDPEGK--FPVLEAVATEGKGVFETLKEVSRLVL  191 (198)
T ss_dssp             EECTTSTTCCCH----HHHHHHHCTTCC--SCEEECBGGGTBTHHHHHHHHHHHHH
T ss_pred             EEchhcccccCH----HHHHHHHHhcCC--ceEEEEecCCCcCHHHHHHHHHHHHH
Confidence            999999754222    233344443321  38999999999999999999987653

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=99.56  E-value=5e-15  Score=98.07  Aligned_cols=137  Identities=13%  Similarity=0.101  Sum_probs=80.1

Q ss_pred             ChhcccCCCCceeccCCCCcceEEE--EEEeC---CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEe
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTIN--FFKLG---TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLI   75 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~--~~~~~---~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vi   75 (162)
                      |+|+|++..   ..+..++++....  ....+   .++.++||||+...          ......++.   .+|++++|+
T Consensus        25 li~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~----------~~~~~~~~~---~~d~~i~v~   88 (181)
T 2fn4_A           25 LTIQFIQSY---FVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEF----------GAMREQYMR---AGHGFLLVF   88 (181)
T ss_dssp             HHHHHHHSS---CCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTT----------SCCHHHHHH---HCSEEEEEE
T ss_pred             HHHHHHhCc---CccccCCCcCceEEEEEEECCEEEEEEEEECCCchhh----------HHHHHHHHh---hCCEEEEEE
Confidence            467777662   2334444443222  22333   25889999998332          122333333   349999999


Q ss_pred             ecCCCCCccH-HHHHHHH-H---HhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHH
Q 031293           76 DTKWGVKPRD-HELISLM-E---RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLR  150 (162)
Q Consensus        76 d~~~~~~~~~-~~~~~~l-~---~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~  150 (162)
                      |...+.+-.. ..++..+ .   ..++|+++|+||+|+.+......  +.........+   .+++++||++|.|+++++
T Consensus        89 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~--~~~~~~~~~~~---~~~~~~Sa~~~~gv~~l~  163 (181)
T 2fn4_A           89 AINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPR--SEASAFGASHH---VAYFEASAKLRLNVDEAF  163 (181)
T ss_dssp             ETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCH--HHHHHHHHHTT---CEEEECBTTTTBSHHHHH
T ss_pred             eCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCH--HHHHHHHHHcC---CeEEEecCCCCCCHHHHH
Confidence            9876321111 1222222 2   23689999999999874322211  11222223232   489999999999999999


Q ss_pred             HHHHHhhh
Q 031293          151 TVLSKIAR  158 (162)
Q Consensus       151 ~~i~~~~~  158 (162)
                      ++|.+.+.
T Consensus       164 ~~l~~~~~  171 (181)
T 2fn4_A          164 EQLVRAVR  171 (181)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99988664

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.55  E-value=3.1e-14  Score=95.77  Aligned_cols=108  Identities=14%  Similarity=0.063  Sum_probs=68.6

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCcc-HHHHHHHHHH-----hCCceEEEEec
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPR-DHELISLMER-----SQTKYQVVLTK  105 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~-~~~~~~~l~~-----~~~~~ivv~nK  105 (162)
                      .+.++||||+...          ......++.   .+|++++|+|+..+.+-. ...++..+..     .++|+++|+||
T Consensus        57 ~~~l~Dt~G~~~~----------~~~~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK  123 (199)
T 2gf0_A           57 TLQITDTTGSHQF----------PAMQRLSIS---KGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNK  123 (199)
T ss_dssp             EEEEEECCGGGSC----------HHHHHHHHH---HCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEEC
T ss_pred             EEEEEeCCChHHh----------HHHHHHhhc---cCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEC
Confidence            5889999998322          233344433   359999999987532111 1123333322     26899999999


Q ss_pred             cCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293          106 TDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR  158 (162)
Q Consensus       106 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~  158 (162)
                      +|+.+......   .........+   .+++++||++|.|+++++++|.+.+.
T Consensus       124 ~Dl~~~~~~~~---~~~~~~~~~~---~~~~~~Sa~~~~gi~~l~~~l~~~~~  170 (199)
T 2gf0_A          124 CDETQREVDTR---EAQAVAQEWK---CAFMETSAKMNYNVKELFQELLTLET  170 (199)
T ss_dssp             TTCSSCSSCHH---HHHHHHHHHT---CEEEECBTTTTBSHHHHHHHHHHHCS
T ss_pred             ccCCccccCHH---HHHHHHHHhC---CeEEEEecCCCCCHHHHHHHHHHHHh
Confidence            99975322111   1222222222   48999999999999999999988664

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=99.55  E-value=9.5e-14  Score=96.41  Aligned_cols=150  Identities=15%  Similarity=0.169  Sum_probs=83.7

Q ss_pred             ChhcccCCCCceeccCCC--CcceEEEEE--Ee-CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEe
Q 031293            1 MLNALTRQWGVVRTSDKP--GLTQTINFF--KL-GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLI   75 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~--g~t~~~~~~--~~-~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vi   75 (162)
                      |+|+|++.. . ..+..|  ++|......  .. +.++.+|||||++.......  +....+...+.....++|++++|+
T Consensus        45 lin~l~g~~-~-~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~v~  120 (239)
T 3lxx_A           45 TGNSILGRK-V-FHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNA--ETSKEIIRCILLTSPGPHALLLVV  120 (239)
T ss_dssp             HHHHHHTSC-C-SCC-------CCSCEEEEEEETTEEEEEEECCSCC-----CH--HHHHHHHHHHHHTTTCCSEEEEEE
T ss_pred             HHHHHcCCC-c-CccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHH--HHHHHHHHHHHhcCCCCcEEEEEe
Confidence            578899883 2 344444  566544432  33 45799999999866532211  111233344444456779999999


Q ss_pred             ecCCCCCccHHHHHHHHH-----HhCCceEEEEeccCCCCcHHHHHHH----HHHHHHHHhcCCCCCCeEEeecCCC---
Q 031293           76 DTKWGVKPRDHELISLME-----RSQTKYQVVLTKTDTVFPIDVARRA----MQIEESLKANNSLVQPVMMVSSKSG---  143 (162)
Q Consensus        76 d~~~~~~~~~~~~~~~l~-----~~~~~~ivv~nK~Dl~~~~~~~~~~----~~~~~~~~~~~~~~~~i~~~Sa~~~---  143 (162)
                      |+. .++..+...+..+.     ....|+++|+||+|+.......+.+    +.+++.+...+.   .++++++..+   
T Consensus       121 d~~-~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~~---~~~~~~~~~~~~~  196 (239)
T 3lxx_A          121 PLG-RYTEEEHKATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIFGD---RYCALNNKATGAE  196 (239)
T ss_dssp             ETT-CCSSHHHHHHHHHHHHHHHHHGGGEEEEEECGGGC------------CHHHHHHHHHHSS---SEEECCTTCCHHH
T ss_pred             eCC-CCCHHHHHHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHcCC---EEEEEECCCCccc
Confidence            986 34445555554443     2346999999999998655444222    234444554443   6677776644   


Q ss_pred             --CCHHHHHHHHHHhhh
Q 031293          144 --AGIRSLRTVLSKIAR  158 (162)
Q Consensus       144 --~g~~~l~~~i~~~~~  158 (162)
                        .++.+|+..+.+.+.
T Consensus       197 ~~~~v~~ll~~i~~~~~  213 (239)
T 3lxx_A          197 QEAQRAQLLGLIQRVVR  213 (239)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHH
Confidence              688899988877653

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=99.54  E-value=7.6e-15  Score=99.94  Aligned_cols=112  Identities=17%  Similarity=0.027  Sum_probs=70.9

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHH--HHHHHHHHh--CCceEEEEeccC
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDH--ELISLMERS--QTKYQVVLTKTD  107 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~--~~~~~l~~~--~~~~ivv~nK~D  107 (162)
                      .+.++||||+...          ......+   .+.+|++++|+|...+.+-...  .++..+...  ++|+++|+||+|
T Consensus        58 ~~~i~Dt~G~~~~----------~~~~~~~---~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D  124 (212)
T 2j0v_A           58 NLGLWDTAGQEDY----------SRLRPLS---YRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLD  124 (212)
T ss_dssp             EEEEECCCCCCCC----------CC--CGG---GTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHH
T ss_pred             EEEEEECCCcHHH----------HHHHHhh---ccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHH
Confidence            5899999998332          1122223   3456999999998764222121  344455443  789999999999


Q ss_pred             CCCcHHHHH------HHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293          108 TVFPIDVAR------RAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR  158 (162)
Q Consensus       108 l~~~~~~~~------~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~  158 (162)
                      +.+......      ..+...+.....+.  .+++++||++|.|+++++++|.+.+.
T Consensus       125 l~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~~~~Sa~~g~gi~~l~~~l~~~~~  179 (212)
T 2j0v_A          125 LRDDKGYLADHTNVITSTQGEELRKQIGA--AAYIECSSKTQQNVKAVFDTAIKVVL  179 (212)
T ss_dssp             HHTCHHHHHTCSSCCCHHHHHHHHHHHTC--SEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             hhhCccccccccCCCCHHHHHHHHHHcCC--ceEEEccCCCCCCHHHHHHHHHHHHh
Confidence            875443200      01222233333321  48999999999999999999987653

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=99.54  E-value=2.6e-15  Score=99.70  Aligned_cols=111  Identities=17%  Similarity=0.022  Sum_probs=68.9

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHH--HHHHHHHHh--CCceEEEEeccC
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDH--ELISLMERS--QTKYQVVLTKTD  107 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~--~~~~~l~~~--~~~~ivv~nK~D  107 (162)
                      .+.++||||+...          ......+   .+.+|++++|+|+..+.+-...  .++..+...  ++|+++|+||+|
T Consensus        57 ~~~i~Dt~G~~~~----------~~~~~~~---~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D  123 (182)
T 3bwd_D           57 NLGLWDTAGQEDY----------NRLRPLS---YRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLD  123 (182)
T ss_dssp             -CEEECCCC-CTT----------TTTGGGG---GTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHH
T ss_pred             EEEEEECCCChhh----------hhhHHhh---ccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechh
Confidence            4679999998321          1222222   3456999999998764322221  244445443  689999999999


Q ss_pred             CCCcHHHHH--------HHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293          108 TVFPIDVAR--------RAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  157 (162)
Q Consensus       108 l~~~~~~~~--------~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~  157 (162)
                      +.+......        ..+...+.....+  ..+++++||++|.|+++++++|.+.+
T Consensus       124 l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l~~~i  179 (182)
T 3bwd_D          124 LRDDKQFFIDHPGAVPITTVQGEELKKLIG--APAYIECSSKSQENVKGVFDAAIRVV  179 (182)
T ss_dssp             HHTCHHHHHHC--CCCCCHHHHHHHHHHHT--CSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             hhcCcccccccccCCCCCHHHHHHHHHHcC--CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            875543200        1112222333232  14899999999999999999998764

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=99.53  E-value=2.3e-15  Score=117.69  Aligned_cols=67  Identities=24%  Similarity=0.327  Sum_probs=61.4

Q ss_pred             CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCC
Q 031293           30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV  109 (162)
Q Consensus        30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~  109 (162)
                      +.+++++|||||             .+|..+..++++.+|++++|+|+.+++..++..+++.+.+.++|.++++||+|..
T Consensus        66 ~~~iNlIDTPGH-------------~DF~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~lp~i~~INKmDr~  132 (638)
T 3j25_A           66 NTKVNIIDTPGH-------------MDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTIFFINKIDQN  132 (638)
T ss_dssp             SCBCCCEECCCS-------------SSTHHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHTCSCEECCEECCSS
T ss_pred             CEEEEEEECCCc-------------HHHHHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEeccccc
Confidence            667999999999             6777788888888999999999999999999999999999999999999999976

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=99.53  E-value=1.4e-14  Score=99.34  Aligned_cols=108  Identities=19%  Similarity=0.158  Sum_probs=69.7

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHHHHH---HhCCceEEEEeccC
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLME---RSQTKYQVVLTKTD  107 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~~l~---~~~~~~ivv~nK~D  107 (162)
                      ++.+|||+|...          +..+...|++.   +++++++.|....-+-.. ..++..+.   ..++|+++|.||+|
T Consensus        63 ~l~iwDtaGqe~----------~~~l~~~~~~~---a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~D  129 (216)
T 4dkx_A           63 RLQLWDTAGLER----------FRSLIPSYIRD---SAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTD  129 (216)
T ss_dssp             EEEEECCSCTTT----------CGGGHHHHHTT---CSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTT
T ss_pred             EEEEEECCCchh----------hhhHHHHHhcc---ccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccc
Confidence            478999999822          24455666554   489999998765321111 12333332   23689999999999


Q ss_pred             CCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293          108 TVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  157 (162)
Q Consensus       108 l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~  157 (162)
                      +.+...+..  +..++.....+   .+++++||++|.|++++++.|.+.+
T Consensus       130 l~~~r~V~~--~e~~~~a~~~~---~~~~e~SAktg~nV~e~F~~i~~~i  174 (216)
T 4dkx_A          130 LADKRQVSI--EEGERKAKELN---VMFIETSAKAGYNVKQLFRRVAAAL  174 (216)
T ss_dssp             CGGGCCSCH--HHHHHHHHHHT---CEEEEEBTTTTBSHHHHHHHHHHHC
T ss_pred             hHhcCcccH--HHHhhHHHHhC---CeeEEEeCCCCcCHHHHHHHHHHHH
Confidence            864332211  12233334343   4799999999999999999998765

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=99.53  E-value=1.4e-14  Score=95.87  Aligned_cols=133  Identities=6%  Similarity=-0.044  Sum_probs=76.4

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEeC---CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKLG---TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT   77 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~~---~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~   77 (162)
                      |+|+|++.. .....++.+... ......+   .++.++||||...               ..++   +.+|++++|+|.
T Consensus        23 li~~l~~~~-~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~---------------~~~~---~~~d~~ilv~D~   82 (178)
T 2iwr_A           23 LIHRFLTGS-YQVLEKTESEQY-KKEMLVDGQTHLVLIREEAGAPD---------------AKFS---GWADAVIFVFSL   82 (178)
T ss_dssp             HHHHHHHSC-CCCCSSCSSSEE-EEEEEETTEEEEEEEEECSSSCC---------------HHHH---HHCSEEEEEEET
T ss_pred             HHHHHHhCC-CCCcCCCcceeE-EEEEEECCEEEEEEEEECCCCch---------------hHHH---HhCCEEEEEEEC
Confidence            467777662 332333333222 1222332   2478999999822               1222   235999999998


Q ss_pred             CCCCCccHHH-HHHHHHH------hCCceEEEEeccCCCC--cHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHH
Q 031293           78 KWGVKPRDHE-LISLMER------SQTKYQVVLTKTDTVF--PIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRS  148 (162)
Q Consensus        78 ~~~~~~~~~~-~~~~l~~------~~~~~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~  148 (162)
                      ..+.+-.... ++.++..      .++|+++|+||+|+..  .....  .+..++.....+  ..+++++||++|.|+++
T Consensus        83 ~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~--~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~  158 (178)
T 2iwr_A           83 EDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVG--DARARALXADMK--RCSYYETXATYGLNVDR  158 (178)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSC--HHHHHHHHHHHS--SEEEEEEBTTTTBTHHH
T ss_pred             cCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCC--HHHHHHHHHhhc--CCeEEEEeccccCCHHH
Confidence            7643222221 2223332      2689999999999841  11110  012222222221  14899999999999999


Q ss_pred             HHHHHHHhh
Q 031293          149 LRTVLSKIA  157 (162)
Q Consensus       149 l~~~i~~~~  157 (162)
                      +++++.+.+
T Consensus       159 lf~~l~~~~  167 (178)
T 2iwr_A          159 VFQEVAQKV  167 (178)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998765

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=99.52  E-value=7.5e-14  Score=94.08  Aligned_cols=139  Identities=11%  Similarity=-0.023  Sum_probs=80.6

Q ss_pred             ChhcccCCCCceeccCCCCcceEEE--EEEeCC---ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEe
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTIN--FFKLGT---KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLI   75 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~--~~~~~~---~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vi   75 (162)
                      |+|+|++..  ......|+++.+..  .+.++.   ++.++||||.....         ..+...+++   .+|++++|+
T Consensus        39 Li~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~---------~~~~~~~~~---~~d~~ilv~  104 (195)
T 3cbq_A           39 LAGTFGGLQ--GDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAG---------GWLRDHCLQ---TGDAFLIVF  104 (195)
T ss_dssp             HHHHTCCEE--CCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGG---------HHHHHHHHH---HCSEEEEEE
T ss_pred             HHHHHHhcc--CCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccch---------hhhHHHhhc---cCCEEEEEE
Confidence            467776542  12233444443322  223332   47789999983320         112333333   359999999


Q ss_pred             ecCCCCCcc-HHHHHHHHHH----hCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHH
Q 031293           76 DTKWGVKPR-DHELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLR  150 (162)
Q Consensus        76 d~~~~~~~~-~~~~~~~l~~----~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~  150 (162)
                      |.....+-. ...++..+..    .++|+++|.||+|+.+...+.  .+..++.....+   .+++++||++|.|+++++
T Consensus       105 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~--~~~~~~~a~~~~---~~~~e~Sa~~~~~v~~lf  179 (195)
T 3cbq_A          105 SVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVS--LEEGRHLAGTLS---CKHIETSAALHHNTRELF  179 (195)
T ss_dssp             ETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSC--HHHHHHHHHHTT---CEEEEEBTTTTBSHHHHH
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcC--HHHHHHHHHHhC---CEEEEEcCCCCCCHHHHH
Confidence            987532111 1223333332    268999999999997432211  112222333333   489999999999999999


Q ss_pred             HHHHHhhh
Q 031293          151 TVLSKIAR  158 (162)
Q Consensus       151 ~~i~~~~~  158 (162)
                      +++.+.+.
T Consensus       180 ~~l~~~i~  187 (195)
T 3cbq_A          180 EGAVRQIR  187 (195)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99988664

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=99.52  E-value=1.8e-16  Score=107.09  Aligned_cols=140  Identities=14%  Similarity=0.100  Sum_probs=74.3

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEeCC---ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKLGT---KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT   77 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~~~---~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~   77 (162)
                      |+|+|++........+..+.+.....+..+.   .+.++||||....          ......+   .+.+|++++|+|+
T Consensus        49 li~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~~~~---~~~~d~~i~v~d~  115 (199)
T 3l0i_B           49 LLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF----------RTITSSY---YRGAHGIIVVYDV  115 (199)
T ss_dssp             TTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTC----------CCCSCC-----CCCSEEEECC-C
T ss_pred             HHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhH----------HHHHHHH---hhcCCEEEEEEEC
Confidence            5677776622111122222223333344432   5889999997322          1112222   2456999999998


Q ss_pred             CCCCCccH-HHHHHHHHHh---CCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHH
Q 031293           78 KWGVKPRD-HELISLMERS---QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVL  153 (162)
Q Consensus        78 ~~~~~~~~-~~~~~~l~~~---~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i  153 (162)
                      ..+.+-.. ..++..+...   ++|+++|+||+|+.+......  +..+......+   .+++++||++|.|+++++.+|
T Consensus       116 ~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~--~~~~~~~~~~~---~~~~~vSA~~g~gv~~l~~~l  190 (199)
T 3l0i_B          116 TDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDY--TTAKEFADSLG---IPFLETSAKNATNVEQSFMTM  190 (199)
T ss_dssp             CCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCS--CC-CHHHHTTT---CCBCCCCC---HHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCH--HHHHHHHHHcC---CeEEEEECCCCCCHHHHHHHH
Confidence            86432111 1233334332   689999999999974322110  11222233333   489999999999999999999


Q ss_pred             HHhhh
Q 031293          154 SKIAR  158 (162)
Q Consensus       154 ~~~~~  158 (162)
                      .+.+.
T Consensus       191 ~~~l~  195 (199)
T 3l0i_B          191 AAEIK  195 (199)
T ss_dssp             TTTTT
T ss_pred             HHHHH
Confidence            87654

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=99.51  E-value=6.2e-16  Score=106.10  Aligned_cols=137  Identities=13%  Similarity=-0.003  Sum_probs=86.7

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEeC---CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKLG---TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT   77 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~~---~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~   77 (162)
                      |+|+++........++.+|+|.....+..+   ..+.++||||+...          ......++.   .+|++++|+|+
T Consensus        31 li~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~~~~~~---~~~~~i~v~d~   97 (221)
T 3gj0_A           31 FVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKF----------GGLRDGYYI---QAQCAIIMFDV   97 (221)
T ss_dssp             HHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGT----------SCCCHHHHT---TCCEEEEEEET
T ss_pred             HHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHH----------hHHHHHHHh---cCCEEEEEEEC
Confidence            456643332345567888888776666553   35889999997322          122333433   45999999998


Q ss_pred             CCCCCccH-HHHHHHHHHh--CCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHH
Q 031293           78 KWGVKPRD-HELISLMERS--QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLS  154 (162)
Q Consensus        78 ~~~~~~~~-~~~~~~l~~~--~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~  154 (162)
                      ..+.+-.. ..++..+...  ++|+++|+||+|+.+......    ........+   .+++++||++|.|+++++.+|.
T Consensus        98 ~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~----~~~~~~~~~---~~~~~~Sa~~~~gi~~l~~~l~  170 (221)
T 3gj0_A           98 TSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAK----SIVFHRKKN---LQYYDISAKSNYNFEKPFLWLA  170 (221)
T ss_dssp             TCHHHHHTHHHHHHHHHHHSTTCCEEEEEECTTSSSCSSCGG----GCCHHHHHT---CEEEECBGGGTBTTTHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCccccccccHH----HHHHHHHcC---CEEEEEeCCCCCCHHHHHHHHH
Confidence            86432111 1233333332  789999999999975432211    111222222   4899999999999999999998


Q ss_pred             Hhh
Q 031293          155 KIA  157 (162)
Q Consensus       155 ~~~  157 (162)
                      +.+
T Consensus       171 ~~l  173 (221)
T 3gj0_A          171 RKL  173 (221)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            765

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=99.51  E-value=3.8e-14  Score=95.64  Aligned_cols=140  Identities=9%  Similarity=-0.032  Sum_probs=78.6

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEE--EEeCC---ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEe
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINF--FKLGT---KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLI   75 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~--~~~~~---~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vi   75 (162)
                      |+|+|++..   ..+..++++.+...  ...+.   .+.++||||+...          ......+   ...+|++++|+
T Consensus        36 l~~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~~~~---~~~~~~~i~v~   99 (201)
T 2q3h_A           36 LVVSYTTNG---YPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEF----------DKLRPLC---YTNTDIFLLCF   99 (201)
T ss_dssp             HHHHHHC-----------CCSSEEEEEEEEETTEEEEEEEEECCCSTTC----------SSSGGGG---GTTCSEEEEEE
T ss_pred             HHHHHHhCC---CCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHH----------HHHhHhh---cCCCcEEEEEE
Confidence            467777662   23344444433222  22332   4779999998322          1112222   24569999999


Q ss_pred             ecCCCCCccHH--HHHHHHHHh--CCceEEEEeccCCCCcHHHHH----------HHHHHHHHHHhcCCCCCCeEEeecC
Q 031293           76 DTKWGVKPRDH--ELISLMERS--QTKYQVVLTKTDTVFPIDVAR----------RAMQIEESLKANNSLVQPVMMVSSK  141 (162)
Q Consensus        76 d~~~~~~~~~~--~~~~~l~~~--~~~~ivv~nK~Dl~~~~~~~~----------~~~~~~~~~~~~~~~~~~i~~~Sa~  141 (162)
                      |+..+.+-...  .++..+...  ++|+++|+||+|+........          ..+.........+  ..+++++||+
T Consensus       100 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~~~~~~~Sa~  177 (201)
T 2q3h_A          100 SVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIK--AASYIECSAL  177 (201)
T ss_dssp             ETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHT--CSEEEECCTT
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcC--CcEEEEEecC
Confidence            98764322221  244444433  789999999999975321100          0112222222222  2489999999


Q ss_pred             CCCCHHHHHHHHHHhhh
Q 031293          142 SGAGIRSLRTVLSKIAR  158 (162)
Q Consensus       142 ~~~g~~~l~~~i~~~~~  158 (162)
                      +|.|+++++++|.+.+.
T Consensus       178 ~g~gi~~l~~~l~~~~~  194 (201)
T 2q3h_A          178 TQKNLKEVFDAAIVAGI  194 (201)
T ss_dssp             TCTTHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHh
Confidence            99999999999987654

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=99.51  E-value=1.9e-15  Score=102.20  Aligned_cols=109  Identities=14%  Similarity=0.062  Sum_probs=67.9

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHHHHHH----hCCceEEEEecc
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKT  106 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~~l~~----~~~~~ivv~nK~  106 (162)
                      .+.++||||+...          ......+   .+.+|++++|+|...+.+-.. ..++..+..    .++|+++|+||+
T Consensus        73 ~~~l~Dt~G~~~~----------~~~~~~~---~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~  139 (201)
T 3oes_A           73 HLHLVDTAGQDEY----------SILPYSF---IIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKA  139 (201)
T ss_dssp             EEEEEEECCCCTT----------CCCCGGG---TTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECT
T ss_pred             EEEEEECCCccch----------HHHHHHH---HhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECc
Confidence            4789999998332          1112222   344699999999875321111 122333322    268999999999


Q ss_pred             CCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293          107 DTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR  158 (162)
Q Consensus       107 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~  158 (162)
                      |+.+......  ...+......+   .+++++||++|.|+++++.+|.+.+.
T Consensus       140 Dl~~~~~v~~--~~~~~~~~~~~---~~~~~~Sa~~~~~v~~l~~~l~~~i~  186 (201)
T 3oes_A          140 DLSPEREVQA--VEGKKLAESWG---ATFMESSARENQLTQGIFTKVIQEIA  186 (201)
T ss_dssp             TCGGGCCSCH--HHHHHHHHHHT---CEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred             cCccccccCH--HHHHHHHHHhC---CeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            9874332211  11222223233   48999999999999999999988664

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=99.51  E-value=4.3e-15  Score=107.08  Aligned_cols=123  Identities=15%  Similarity=0.118  Sum_probs=73.2

Q ss_pred             CceEEEcCCCCccccc---CHHHHHHHHHHHHHHHhcCcccceeEEEeec-CCCCCccH-HHHHHHHHHhCCceEEEEec
Q 031293           31 TKLCLVDLPGYGFAYA---KEEVKDAWEELVKEYVSTRVSLKRVCLLIDT-KWGVKPRD-HELISLMERSQTKYQVVLTK  105 (162)
Q Consensus        31 ~~~~ivDtpG~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~-~~~~~~~~-~~~~~~l~~~~~~~ivv~nK  105 (162)
                      .++.+|||||+.....   .....+.+......++.   .+|++++++|+ ..++...+ ..++..+...+.|+++|+||
T Consensus       131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~---~~d~iilvvd~~~~~~~~~~~~~i~~~~~~~~~~~i~v~NK  207 (315)
T 1jwy_B          131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIK---KQNAIIVAVTPANTDLANSDALQLAKEVDPEGKRTIGVITK  207 (315)
T ss_dssp             CSEEEEECCCCC---------CSHHHHHHHHHHHHH---STTEEEEEEEESSSCSTTCSHHHHHHHHCSSCSSEEEEEEC
T ss_pred             CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHc---CCCeEEEEEEecCcchhhhHHHHHHHHhCCCCCcEEEEEcC
Confidence            5699999999854211   11122334444555544   45999999996 55555444 46777777778999999999


Q ss_pred             cCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCC---CCCHHHHHHHHHHhhh
Q 031293          106 TDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKS---GAGIRSLRTVLSKIAR  158 (162)
Q Consensus       106 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~---~~g~~~l~~~i~~~~~  158 (162)
                      +|+.+....  ..+.++..+......+.++.++|+.+   +.|++++++.+.+.++
T Consensus       208 ~Dl~~~~~~--~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~  261 (315)
T 1jwy_B          208 LDLMDKGTD--AMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYFK  261 (315)
T ss_dssp             TTSSCSSCC--CHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHH
T ss_pred             cccCCcchH--HHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHHh
Confidence            999854420  11122211111111223445556666   7899999999877654

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=99.50  E-value=7.2e-14  Score=107.08  Aligned_cols=69  Identities=22%  Similarity=0.326  Sum_probs=55.1

Q ss_pred             CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCC
Q 031293           30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV  109 (162)
Q Consensus        30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~  109 (162)
                      +.++.++||||+             ..+.....+..+.+|++++|+|+..+.......++..+...++|+++++||+|+.
T Consensus        81 ~~~i~liDTPG~-------------~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~~ipiivviNK~Dl~  147 (529)
T 2h5e_A           81 DCLVNLLDTPGH-------------EDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKLDRD  147 (529)
T ss_dssp             TEEEEEECCCCS-------------TTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTTTTCCEEEEEECTTSC
T ss_pred             CeEEEEEECCCC-------------hhHHHHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHHcCCCEEEEEcCcCCc
Confidence            456999999999             3333344445567899999999998887777777777777789999999999997


Q ss_pred             Cc
Q 031293          110 FP  111 (162)
Q Consensus       110 ~~  111 (162)
                      ..
T Consensus       148 ~~  149 (529)
T 2h5e_A          148 IR  149 (529)
T ss_dssp             CS
T ss_pred             cc
Confidence            54

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=99.50  E-value=2.3e-14  Score=113.06  Aligned_cols=122  Identities=18%  Similarity=0.144  Sum_probs=88.1

Q ss_pred             CCceEEEcCCCCccccc---CHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHH-HHHHHHHHhCCceEEEEec
Q 031293           30 GTKLCLVDLPGYGFAYA---KEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDH-ELISLMERSQTKYQVVLTK  105 (162)
Q Consensus        30 ~~~~~ivDtpG~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~-~~~~~l~~~~~~~ivv~nK  105 (162)
                      ..++++|||||++....   +.+..+.+..++..|+.  ..+|++++|+|++.++...+. .++..+...+.|+++|+||
T Consensus       149 ~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~--~~aDlIL~VVDAs~~~~~~d~l~ll~~L~~~g~pvIlVlNK  226 (772)
T 3zvr_A          149 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVT--KENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITK  226 (772)
T ss_dssp             CCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHT--STTEEEEEEEETTSCSSSCHHHHHHHHHCTTCSSEEEEEEC
T ss_pred             CCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHh--cCCcEEEEEEcCCCCcchhHHHHHHHHHHhcCCCEEEEEeC
Confidence            44699999999977432   33445667778888876  456999999999988877776 6778888788999999999


Q ss_pred             cCCCCcHHHHHHHHHHHH-HHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHh
Q 031293          106 TDTVFPIDVARRAMQIEE-SLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKI  156 (162)
Q Consensus       106 ~Dl~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~  156 (162)
                      +|++++.....   .+.. ........+.+++++||++|.|+++|++.+.+.
T Consensus       227 iDlv~~~~~~~---~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e  275 (772)
T 3zvr_A          227 LDLMDEGTDAR---DVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE  275 (772)
T ss_dssp             TTSSCTTCCSH---HHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred             cccCCcchhhH---HHHHHHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence            99986543211   1111 000001123478899999999999999999874

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=99.49  E-value=2.4e-14  Score=95.63  Aligned_cols=107  Identities=7%  Similarity=-0.033  Sum_probs=67.4

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHHHHHH----hCCceEEEEecc
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKT  106 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~~l~~----~~~~~ivv~nK~  106 (162)
                      .+.++||||+...          .     +++   .+|++++|+|...+.+-.. ..++..+..    .++|+++|.||+
T Consensus        68 ~l~i~Dt~G~~~~----------~-----~~~---~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~  129 (184)
T 3ihw_A           68 LLLIRDEGGPPEL----------Q-----FAA---WVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQD  129 (184)
T ss_dssp             EEEEEECSSSCCH----------H-----HHH---HCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECT
T ss_pred             EEEEEECCCChhh----------h-----eec---CCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECc
Confidence            4778999998221          1     322   3599999999876432222 224444443    357999999999


Q ss_pred             CCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293          107 DTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR  158 (162)
Q Consensus       107 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~  158 (162)
                      |+..........+...+.....+  ..+++++||++|.|+++++.++.+.+.
T Consensus       130 Dl~~~~~~~v~~~~~~~~~~~~~--~~~~~e~Sa~~~~gv~~lf~~l~~~i~  179 (184)
T 3ihw_A          130 AISAANPRVIDDSRARKLSTDLK--RCTYYETCATYGLNVERVFQDVAQKVV  179 (184)
T ss_dssp             TCBTTBCCCSCHHHHHHHHHHTT--TCEEEEEBTTTTBTHHHHHHHHHHHHH
T ss_pred             ccccccccccCHHHHHHHHHHcC--CCeEEEecCCCCCCHHHHHHHHHHHHH
Confidence            98421110000112333333333  248999999999999999999988654

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.49  E-value=3.2e-14  Score=95.75  Aligned_cols=108  Identities=14%  Similarity=0.056  Sum_probs=67.9

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHHHHHH----hCCceEEEEecc
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKT  106 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~~l~~----~~~~~ivv~nK~  106 (162)
                      .+.++||||+..           ......++.   .+|++++|+|+..+.+-.. ..++..+..    .++|+++|+||+
T Consensus        77 ~~~l~Dt~G~~~-----------~~~~~~~~~---~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~  142 (196)
T 2atv_A           77 SMEILDTAGQED-----------TIQREGHMR---WGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKA  142 (196)
T ss_dssp             EEEEEECCCCCC-----------CHHHHHHHH---HCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECG
T ss_pred             EEEEEECCCCCc-----------ccchhhhhc---cCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECc
Confidence            488999999843           112233332   3499999999876321111 122333322    368999999999


Q ss_pred             CCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCC-CHHHHHHHHHHhhh
Q 031293          107 DTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGA-GIRSLRTVLSKIAR  158 (162)
Q Consensus       107 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~-g~~~l~~~i~~~~~  158 (162)
                      |+.+.....  .+...+.....+   .+++++||++|. |+++++++|.+.+.
T Consensus       143 Dl~~~~~v~--~~~~~~~~~~~~---~~~~~~Sa~~g~~gi~~l~~~l~~~i~  190 (196)
T 2atv_A          143 DLDHSRQVS--TEEGEKLATELA---CAFYECSACTGEGNITEIFYELCREVR  190 (196)
T ss_dssp             GGGGGCCSC--HHHHHHHHHHHT---SEEEECCTTTCTTCHHHHHHHHHHHHH
T ss_pred             ccccccccC--HHHHHHHHHHhC---CeEEEECCCcCCcCHHHHHHHHHHHHH
Confidence            996432211  011222222222   489999999999 99999999987664

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=99.49  E-value=2.2e-14  Score=98.09  Aligned_cols=112  Identities=15%  Similarity=0.028  Sum_probs=70.4

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH--HHHHHHHHHh--CCceEEEEeccC
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMERS--QTKYQVVLTKTD  107 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~--~~~~~~l~~~--~~~~ivv~nK~D  107 (162)
                      .+.++||||....          ..+...+   .+.+|++++|+|...+.+-..  ..++..+...  +.|+++|+||+|
T Consensus        76 ~l~i~Dt~G~~~~----------~~~~~~~---~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D  142 (214)
T 3q3j_B           76 ELSLWDTSGSPYY----------DNVRPLC---YSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTD  142 (214)
T ss_dssp             EEEEEEECCSGGG----------TTTGGGG---CTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGG
T ss_pred             EEEEEECCCCHhH----------HHHHHHH---cCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChh
Confidence            5889999998221          2222233   345699999999986432222  2344555444  689999999999


Q ss_pred             CCCcHHHH----------HHHHHHHHHHHhcCCCCCCeEEeecCCCCC-HHHHHHHHHHhhh
Q 031293          108 TVFPIDVA----------RRAMQIEESLKANNSLVQPVMMVSSKSGAG-IRSLRTVLSKIAR  158 (162)
Q Consensus       108 l~~~~~~~----------~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g-~~~l~~~i~~~~~  158 (162)
                      +.+.....          ...+...+.....+.  .+++++||++|.| +++++.++.+.+.
T Consensus       143 l~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~~e~SA~~g~g~v~~lf~~l~~~~~  202 (214)
T 3q3j_B          143 LRTDLSTLMELSHQKQAPISYEQGCAIAKQLGA--EIYLEGSAFTSEKSIHSIFRTASMLCL  202 (214)
T ss_dssp             GGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTC--SEEEECCTTTCHHHHHHHHHHHHHHHH
T ss_pred             hccchhhhhhhcccccCccCHHHHHHHHHHcCC--CEEEEeccCCCcccHHHHHHHHHHHHh
Confidence            96421100          001122223333321  3899999999998 9999999987653

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=99.23  E-value=2.6e-15  Score=101.77  Aligned_cols=110  Identities=14%  Similarity=0.001  Sum_probs=68.0

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHH--HHHHHHHHh--CCceEEEEeccC
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDH--ELISLMERS--QTKYQVVLTKTD  107 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~--~~~~~l~~~--~~~~ivv~nK~D  107 (162)
                      .+.++||||+..          +......++   ..+|++++|+|+..+.+-...  .++..+...  ++|+++|+||+|
T Consensus        79 ~l~i~Dt~G~~~----------~~~~~~~~~---~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D  145 (204)
T 3th5_A           79 NLGLWDTAGQED----------YDRLRPLSY---PQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLD  145 (204)
Confidence            466999999821          222333333   346999999998764322222  344444443  789999999999


Q ss_pred             CCCcHHHHHH----------HHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHh
Q 031293          108 TVFPIDVARR----------AMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKI  156 (162)
Q Consensus       108 l~~~~~~~~~----------~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~  156 (162)
                      +.+.....+.          .+...+.....+  ..+++++||++|.|+++++++|.+.
T Consensus       146 l~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~~~~~~vSA~~g~gi~~l~~~l~~~  202 (204)
T 3th5_A          146 LRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG--AVKYLECSALTQRGLKTVFDEAIRA  202 (204)
Confidence            9754321110          011111222121  1378999999999999999998764

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=99.48  E-value=4.1e-13  Score=106.07  Aligned_cols=68  Identities=15%  Similarity=0.227  Sum_probs=53.6

Q ss_pred             CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCCC
Q 031293           31 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF  110 (162)
Q Consensus        31 ~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~  110 (162)
                      ..+.+||||||             ..+.....+..+.+|++++|+|+..+.......++..+...++|+++|+||+|+..
T Consensus        82 ~~i~liDTPG~-------------~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~ip~ilviNKiD~~~  148 (704)
T 2rdo_7           82 HRINIIDTPGH-------------VDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRMG  148 (704)
T ss_pred             eeEEEEeCCCc-------------cchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCccc
Confidence            56999999999             33333444444567999999999988877777777777777899999999999874


Q ss_pred             c
Q 031293          111 P  111 (162)
Q Consensus       111 ~  111 (162)
                      .
T Consensus       149 ~  149 (704)
T 2rdo_7          149 A  149 (704)
T ss_pred             c
Confidence            3

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.47  E-value=1.6e-13  Score=100.80  Aligned_cols=124  Identities=19%  Similarity=0.327  Sum_probs=63.6

Q ss_pred             ceEEEcCCCCcccccCH----HHHHHHHHHHHHHHhcCcc----------cceeEEEeec-CCCCCccHHHHHHHHHHhC
Q 031293           32 KLCLVDLPGYGFAYAKE----EVKDAWEELVKEYVSTRVS----------LKRVCLLIDT-KWGVKPRDHELISLMERSQ   96 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~----~~~~~~~~~~~~~~~~~~~----------~~~vi~vid~-~~~~~~~~~~~~~~l~~~~   96 (162)
                      ++.++||||+|+.....    .........+..|+.....          ++++++++++ ..++...+..++..+. .+
T Consensus        96 ~l~i~DTpG~gd~~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l~-~~  174 (361)
T 2qag_A           96 RLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH-NK  174 (361)
T ss_dssp             EEEEEC--------------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHTC-S-
T ss_pred             ceEEEEeccccccCccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHhc-cC
Confidence            58999999997652211    0111112222344443332          3467777775 6677776666666553 46


Q ss_pred             CceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCC---HHHHHHHHHHhhhh
Q 031293           97 TKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAG---IRSLRTVLSKIARF  159 (162)
Q Consensus        97 ~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g---~~~l~~~i~~~~~~  159 (162)
                      +|+++|+||+|+....+.....+.+.+.+...+   .+++++||+++.|   +..+...|.+.+++
T Consensus       175 ~piIlV~NK~Dl~~~~ev~~~k~~i~~~~~~~~---i~~~~~Sa~~~~~~e~~~~l~~~i~~~ip~  237 (361)
T 2qag_A          175 VNIVPVIAKADTLTLKERERLKKRILDEIEEHN---IKIYHLPDAESDEDEDFKEQTRLLKASIPF  237 (361)
T ss_dssp             SCEEEEEECCSSSCHHHHHHHHHHHHHHTTCC----CCSCCCC---------CHHHHHHHHHTCSC
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCC---CCEEeCCCcCCCcchhHHHHHHHHHhcCCC
Confidence            899999999999977666554455655555443   5899999999887   33344444444443

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=99.47  E-value=1.8e-13  Score=108.35  Aligned_cols=66  Identities=17%  Similarity=0.226  Sum_probs=59.1

Q ss_pred             CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCC
Q 031293           31 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV  109 (162)
Q Consensus        31 ~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~  109 (162)
                      ..++++|||||             .+|..+..++++.+|++++|+|+.+++..++...++.+...++|.++++||+|..
T Consensus        85 ~~iNlIDTPGH-------------vDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~~lp~i~~iNKiDr~  150 (709)
T 4fn5_A           85 YRVNVIDTPGH-------------VDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKYGVPRIVYVNKMDRQ  150 (709)
T ss_dssp             EEEEEECCCSC-------------TTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHHTCCEEEEEECSSST
T ss_pred             EEEEEEeCCCC-------------cccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEcccccc
Confidence            35899999999             6666777777778899999999999999999999999998999999999999986

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=99.46  E-value=9.3e-14  Score=100.46  Aligned_cols=110  Identities=14%  Similarity=-0.012  Sum_probs=69.7

Q ss_pred             eEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHH--HHHHHHHHh--CCceEEEEeccCC
Q 031293           33 LCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDH--ELISLMERS--QTKYQVVLTKTDT  108 (162)
Q Consensus        33 ~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~--~~~~~l~~~--~~~~ivv~nK~Dl  108 (162)
                      +.++||||+...          ......   ....+|++++|+|+..+.+-...  .++..+...  ++|+++|+||+|+
T Consensus       205 ~~l~Dt~G~~~~----------~~~~~~---~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl  271 (332)
T 2wkq_A          205 LGLWDTAGLEDY----------DRLRPL---SYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDL  271 (332)
T ss_dssp             EEEEEECCCGGG----------TTTGGG---GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHH
T ss_pred             EEEEeCCCchhh----------hHHHHH---hccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhc
Confidence            569999998321          111222   23557999999998764322222  233444444  7899999999998


Q ss_pred             CCcHHHHHH----------HHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293          109 VFPIDVARR----------AMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  157 (162)
Q Consensus       109 ~~~~~~~~~----------~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~  157 (162)
                      .+.......          .+...+.....+  ..+++++||++|.|+++++++|.+.+
T Consensus       272 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l~~~~  328 (332)
T 2wkq_A          272 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIG--AVKYLECSALTQRGLKTVFDEAIRAV  328 (332)
T ss_dssp             HTCHHHHHHHHHTTCCCCCHHHHHHHHHHTT--CSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             ccccchhhhccccccccccHHHHHHHHHHcC--CcEEEEecCCCCcCHHHHHHHHHHHH
Confidence            654322111          112222333332  24899999999999999999998765

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=99.45  E-value=6.4e-14  Score=93.74  Aligned_cols=108  Identities=10%  Similarity=0.014  Sum_probs=66.1

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHHHHHH------hCCceEEEEe
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER------SQTKYQVVLT  104 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~~l~~------~~~~~ivv~n  104 (162)
                      .+.++||||+...          .. +..+++   .+|++++|+|...+.+-.. ..++..+..      .++|+++|+|
T Consensus        70 ~l~i~Dt~G~~~~----------~~-~~~~~~---~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~n  135 (187)
T 3c5c_A           70 HLRVMDTADLDTP----------RN-CERYLN---WAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGN  135 (187)
T ss_dssp             EEEEEECCC---C----------CC-THHHHT---TCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE
T ss_pred             EEEEEECCCCCcc----------hh-HHHHHh---hCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEE
Confidence            4789999998321          11 223433   3599999999875321111 123333332      3789999999


Q ss_pred             ccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeec-CCCCCHHHHHHHHHHhhh
Q 031293          105 KTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSS-KSGAGIRSLRTVLSKIAR  158 (162)
Q Consensus       105 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa-~~~~g~~~l~~~i~~~~~  158 (162)
                      |+|+.+......  +...+.....+   .+++++|| ++|.|+++++++|.+.+.
T Consensus       136 K~Dl~~~~~v~~--~~~~~~~~~~~---~~~~e~Sa~~~g~gv~~lf~~l~~~i~  185 (187)
T 3c5c_A          136 KLDMAQYRQVTK--AEGVALAGRFG---CLFFEVSACLDFEHVQHVFHEAVREAR  185 (187)
T ss_dssp             CGGGGGGCSSCH--HHHHHHHHHHT---CEEEECCSSSCSHHHHHHHHHHHHHHH
T ss_pred             CcchhhcCccCH--HHHHHHHHHcC---CcEEEEeecCccccHHHHHHHHHHHHh
Confidence            999864322110  12222333333   48999999 899999999999987653

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=99.44  E-value=1.3e-13  Score=91.84  Aligned_cols=111  Identities=15%  Similarity=0.090  Sum_probs=68.3

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH--HHHHHHHHH--hCCceEEEEeccC
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMER--SQTKYQVVLTKTD  107 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~--~~~~~~l~~--~~~~~ivv~nK~D  107 (162)
                      .+.++||||+...          ......   ....+|++++|+|...+.+-..  ..++..+..  .+.|+++|+||+|
T Consensus        56 ~~~i~Dt~G~~~~----------~~~~~~---~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D  122 (184)
T 1m7b_A           56 ELSLWDTSGSPYY----------DNVRPL---SYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSD  122 (184)
T ss_dssp             EEEEEEECCSGGG----------TTTGGG---GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGG
T ss_pred             EEEEEECCCChhh----------hhhHHh---hcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcch
Confidence            4889999998221          111222   2345699999999876422222  123344443  2689999999999


Q ss_pred             CCCcHHHH-H---------HHHHHHHHHHhcCCCCCCeEEeecC-CCCCHHHHHHHHHHhh
Q 031293          108 TVFPIDVA-R---------RAMQIEESLKANNSLVQPVMMVSSK-SGAGIRSLRTVLSKIA  157 (162)
Q Consensus       108 l~~~~~~~-~---------~~~~~~~~~~~~~~~~~~i~~~Sa~-~~~g~~~l~~~i~~~~  157 (162)
                      +.+..... +         ..+...+.....+  ..+++++||+ +|.|+++++..+.+.+
T Consensus       123 l~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~~~~~e~Sa~~~~~gi~~l~~~i~~~~  181 (184)
T 1m7b_A          123 LRTDVSTLVELSNHRQTPVSYDQGANMAKQIG--AATYIECSALQSENSVRDIFHVATLAC  181 (184)
T ss_dssp             GGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHT--CSEEEECBTTTBHHHHHHHHHHHHHHH
T ss_pred             hhcchhhHhhhhhcccCCCCHHHHHHHHHHcC--CcEEEEeeecCCCcCHHHHHHHHHHHH
Confidence            97432110 0         0112223333332  2489999999 6899999999998764

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=99.42  E-value=2e-13  Score=92.68  Aligned_cols=111  Identities=15%  Similarity=0.080  Sum_probs=68.3

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH--HHHHHHHHH--hCCceEEEEeccC
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMER--SQTKYQVVLTKTD  107 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~--~~~~~~l~~--~~~~~ivv~nK~D  107 (162)
                      ++.++||||+...          ......+   ...+|++++|+|+..+.+-..  ..++..+..  .+.|+++|+||+|
T Consensus        77 ~l~i~Dt~G~~~~----------~~~~~~~---~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D  143 (205)
T 1gwn_A           77 ELSLWDTSGSPYY----------DNVRPLS---YPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSD  143 (205)
T ss_dssp             EEEEEEECCSGGG----------TTTGGGG---CTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGG
T ss_pred             EEEEEeCCCcHhh----------hHHHHhh---ccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechh
Confidence            4889999998221          1122222   345799999999876422222  123344443  2689999999999


Q ss_pred             CCCcHHHH-H---------HHHHHHHHHHhcCCCCCCeEEeecC-CCCCHHHHHHHHHHhh
Q 031293          108 TVFPIDVA-R---------RAMQIEESLKANNSLVQPVMMVSSK-SGAGIRSLRTVLSKIA  157 (162)
Q Consensus       108 l~~~~~~~-~---------~~~~~~~~~~~~~~~~~~i~~~Sa~-~~~g~~~l~~~i~~~~  157 (162)
                      +.+..... +         ..+..++.....+  ..+++++||+ +|.|+++++..+.+.+
T Consensus       144 l~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~~~~~e~SAk~~~~gv~~lf~~l~~~~  202 (205)
T 1gwn_A          144 LRTDVSTLVELSNHRQTPVSYDQGANMAKQIG--AATYIECSALQSENSVRDIFHVATLAC  202 (205)
T ss_dssp             GGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHT--CSEEEECCTTTCHHHHHHHHHHHHHHH
T ss_pred             hccchhhhhhhcccccCCCCHHHHHHHHHHcC--CCEEEEeeeccCCcCHHHHHHHHHHHH
Confidence            97432110 0         0112233333332  1489999999 6899999999998754

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=99.42  E-value=1.9e-12  Score=86.30  Aligned_cols=116  Identities=12%  Similarity=0.075  Sum_probs=69.3

Q ss_pred             CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCc--cHHHHHHHHHH--hCCceEEEEecc
Q 031293           31 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKP--RDHELISLMER--SQTKYQVVLTKT  106 (162)
Q Consensus        31 ~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~--~~~~~~~~l~~--~~~~~ivv~nK~  106 (162)
                      ..+.++||||.          +.+......++.   .++++++|.|.+.+...  .-..++..+..  .+.|+++|.||+
T Consensus        56 ~~~~i~Dt~G~----------~~~~~~~~~~~~---~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~piilv~nK~  122 (184)
T 2zej_A           56 LVLNVWDFAGR----------EEFYSTHPHFMT---QRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHL  122 (184)
T ss_dssp             CEEEEEEECSH----------HHHHTTSHHHHH---HSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCEEEEEEECG
T ss_pred             eEEEEEecCCC----------HHHHHhhHHHcc---CCcEEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCcEEEEEECC
Confidence            35889999998          222333334443   34888889998764211  11223333332  268999999999


Q ss_pred             CCCCcHHHHHHHHHHHHHHH-hcCC-CCCCeEEeecCCCC-CHHHHHHHHHHhhhh
Q 031293          107 DTVFPIDVARRAMQIEESLK-ANNS-LVQPVMMVSSKSGA-GIRSLRTVLSKIARF  159 (162)
Q Consensus       107 Dl~~~~~~~~~~~~~~~~~~-~~~~-~~~~i~~~Sa~~~~-g~~~l~~~i~~~~~~  159 (162)
                      |+.+............+.+. ..+. ...+++++||+++. |++++++.|.+.+..
T Consensus       123 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~l~~~i~~~~~~  178 (184)
T 2zej_A          123 DVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINESLN  178 (184)
T ss_dssp             GGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTTSCCHHHHHHHHHHHHHHHC
T ss_pred             CcccchhhHHHHHHHHHHHHHhcCCcchhheEEEecccCchhHHHHHHHHHHHHhc
Confidence            99865443322222222221 1221 00128999999996 999999999876653

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=99.42  E-value=4.5e-13  Score=105.66  Aligned_cols=82  Identities=18%  Similarity=0.259  Sum_probs=55.3

Q ss_pred             CCCcceEEEEEE--e-CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHH
Q 031293           17 KPGLTQTINFFK--L-GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLME   93 (162)
Q Consensus        17 ~~g~t~~~~~~~--~-~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~   93 (162)
                      .+|.|.......  . +.++.++||||+.             .+.....+..+.+|++++|+|+..+....+...+..+.
T Consensus        60 ~~giTi~~~~~~~~~~~~~i~liDTPG~~-------------df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~  126 (691)
T 1dar_A           60 ERGITITAAVTTCFWKDHRINIIDTPGHV-------------DFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAE  126 (691)
T ss_dssp             -------CCEEEEEETTEEEEEECCCSST-------------TCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHH
T ss_pred             hcccccccceEEEEECCeEEEEEECcCcc-------------chHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHH
Confidence            455555433322  2 4569999999992             22223333334569999999999988887777777777


Q ss_pred             HhCCceEEEEeccCCCCc
Q 031293           94 RSQTKYQVVLTKTDTVFP  111 (162)
Q Consensus        94 ~~~~~~ivv~nK~Dl~~~  111 (162)
                      ..++|+++|+||+|+...
T Consensus       127 ~~~~p~ivviNKiD~~~~  144 (691)
T 1dar_A          127 KYKVPRIAFANKMDKTGA  144 (691)
T ss_dssp             HTTCCEEEEEECTTSTTC
T ss_pred             HcCCCEEEEEECCCcccC
Confidence            789999999999999753

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=99.41  E-value=5.1e-13  Score=105.41  Aligned_cols=94  Identities=17%  Similarity=0.188  Sum_probs=60.0

Q ss_pred             CCCcceEEEEE--Ee-CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHH
Q 031293           17 KPGLTQTINFF--KL-GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLME   93 (162)
Q Consensus        17 ~~g~t~~~~~~--~~-~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~   93 (162)
                      .+|+|......  .. +.++.++||||+.+.          ...+..++   +.+|++++|+|+..+....+...+..+.
T Consensus        58 ~~giTi~~~~~~~~~~~~~i~liDTPG~~df----------~~~~~~~l---~~aD~~llVvDa~~g~~~~~~~~~~~~~  124 (693)
T 2xex_A           58 DRGITITSAATTAAWEGHRVNIIDTPGHVDF----------TVEVERSL---RVLDGAVTVLDAQSGVEPQTETVWRQAT  124 (693)
T ss_dssp             ------CCSEEEEEETTEEEEEECCCCCSSC----------CHHHHHHH---HHCSEEEEEEETTTBSCHHHHHHHHHHH
T ss_pred             hcCceEeeeeEEEEECCeeEEEEECcCCcch----------HHHHHHHH---HHCCEEEEEECCCCCCcHHHHHHHHHHH
Confidence            45666543332  22 456999999999432          12223333   3469999999999888888878888788


Q ss_pred             HhCCceEEEEeccCCCCcHHHHHHHHHHHHH
Q 031293           94 RSQTKYQVVLTKTDTVFPIDVARRAMQIEES  124 (162)
Q Consensus        94 ~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~  124 (162)
                      ..++|+++|+||+|+.... .....+.+++.
T Consensus       125 ~~~~p~ilviNK~Dl~~~~-~~~~~~~l~~~  154 (693)
T 2xex_A          125 TYGVPRIVFVNKMDKLGAN-FEYSVSTLHDR  154 (693)
T ss_dssp             HTTCCEEEEEECTTSTTCC-HHHHHHHHHHH
T ss_pred             HcCCCEEEEEECCCccccc-hHHHHHHHHHH
Confidence            7899999999999997532 23333444443

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=99.41  E-value=6.3e-14  Score=103.98  Aligned_cols=72  Identities=15%  Similarity=0.078  Sum_probs=32.2

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEE-----------------------eC----CceEEEcCCCCcccccCHHHHHH
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFK-----------------------LG----TKLCLVDLPGYGFAYAKEEVKDA   53 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~-----------------------~~----~~~~ivDtpG~~~~~~~~~~~~~   53 (162)
                      |+|+|++. . +.++++|++|++.....                       .+    .++.++||||+....      ..
T Consensus        16 L~n~L~~~-~-~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG~~~~a------~~   87 (397)
T 1wxq_A           16 FFSAATLV-D-VEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAGLVPGA------HE   87 (397)
T ss_dssp             HHHHHHC----------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC--------------
T ss_pred             HHHHHHCC-C-CcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCCcccch------hh
Confidence            68999998 3 77899999998554321                       11    258899999984321      01


Q ss_pred             HHHHHHHHHhcCcccceeEEEeecCCC
Q 031293           54 WEELVKEYVSTRVSLKRVCLLIDTKWG   80 (162)
Q Consensus        54 ~~~~~~~~~~~~~~~~~vi~vid~~~~   80 (162)
                      ...+...++...+.+|++++|+|+..+
T Consensus        88 ~~~l~~~~l~~i~~aD~il~VvD~~~~  114 (397)
T 1wxq_A           88 GRGLGNKFLDDLRMASALIHVVDATGK  114 (397)
T ss_dssp             -------CCCSSTTCSEEEEEEETTCC
T ss_pred             hhhHHHHHHHHHhcCCEEEEEEecccc
Confidence            123345555666788999999999764

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=99.40  E-value=7.3e-13  Score=90.40  Aligned_cols=140  Identities=13%  Similarity=0.029  Sum_probs=75.7

Q ss_pred             ChhcccCCCCceeccCCCCcceEE--EEEEeCC---ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEe
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTI--NFFKLGT---KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLI   75 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~--~~~~~~~---~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vi   75 (162)
                      |+|++++.. ...++..+.++.+.  ....++.   ++.++||+|....          ...+...  ..+.++++++|.
T Consensus        53 Ll~r~~~~~-~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~----------~~~l~~~--~~~~a~~~ilVy  119 (211)
T 2g3y_A           53 LANIFAGVH-DSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGE----------NEWLHDH--CMQVGDAYLIVY  119 (211)
T ss_dssp             HHHHHHCCC-CTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHH----------HHHHHHC--CCCCCSEEEEEE
T ss_pred             HHHHHHhCC-CCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcch----------hhhHHHH--HHhhCCEEEEEE
Confidence            567887652 22233333333221  2223322   3678999997210          1122221  124468888888


Q ss_pred             ecCCCCCccH-HHHHHHHHH----hCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHH
Q 031293           76 DTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLR  150 (162)
Q Consensus        76 d~~~~~~~~~-~~~~~~l~~----~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~  150 (162)
                      |....-+-.. ..+...+..    .++|+++|.||+|+.+...+..  +..+......+   .+++++||++|.|+++++
T Consensus       120 dvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~--~e~~~~a~~~~---~~~~e~SAk~g~~v~elf  194 (211)
T 2g3y_A          120 SITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSV--SEGRACAVVFD---CKFIETSAAVQHNVKELF  194 (211)
T ss_dssp             ETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCH--HHHHHHHHHHT---CEEEECBTTTTBSHHHHH
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeH--HHHHHHHHHcC---CEEEEEeCCCCCCHHHHH
Confidence            8764211111 123333332    2689999999999964222111  11111222222   489999999999999999


Q ss_pred             HHHHHhhh
Q 031293          151 TVLSKIAR  158 (162)
Q Consensus       151 ~~i~~~~~  158 (162)
                      .+|.+.+.
T Consensus       195 ~~l~~~i~  202 (211)
T 2g3y_A          195 EGIVRQVR  202 (211)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99987664

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=99.39  E-value=2.2e-12  Score=101.46  Aligned_cols=67  Identities=25%  Similarity=0.351  Sum_probs=53.4

Q ss_pred             CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCC
Q 031293           30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV  109 (162)
Q Consensus        30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~  109 (162)
                      +..+.++||||+             ..+.....+..+.+|++++|+|+..+.......++..+...++|+++|+||+|+.
T Consensus        73 ~~~~nliDTpG~-------------~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~~ip~ilv~NKiD~~  139 (665)
T 2dy1_A           73 GHRVFLLDAPGY-------------GDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVVVTKLDKG  139 (665)
T ss_dssp             TEEEEEEECCCS-------------GGGHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECGGGC
T ss_pred             CEEEEEEeCCCc-------------cchHHHHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHHHccCCEEEEecCCchh
Confidence            456899999999             2333333344455699999999998888888888888888899999999999987

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=99.37  E-value=1.1e-13  Score=106.46  Aligned_cols=108  Identities=19%  Similarity=0.253  Sum_probs=68.9

Q ss_pred             CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhC--CceEEEEeccCC
Q 031293           31 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQ--TKYQVVLTKTDT  108 (162)
Q Consensus        31 ~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~--~~~ivv~nK~Dl  108 (162)
                      ..+.++||||+...          ......+++.   +|++++|+|++..  .....++..+....  .|+++|+||+|+
T Consensus        98 ~~~~i~Dt~G~e~~----------~~~~~~~l~~---~d~ii~V~D~s~~--~~~~~~~~~l~~~~~~~pvilV~NK~Dl  162 (535)
T 3dpu_A           98 CLFHFWDFGGQEIM----------HASHQFFMTR---SSVYMLLLDSRTD--SNKHYWLRHIEKYGGKSPVIVVMNKIDE  162 (535)
T ss_dssp             CEEEEECCCSCCTT----------TTTCHHHHHS---SEEEEEEECGGGG--GGHHHHHHHHHHHSSSCCEEEEECCTTT
T ss_pred             EEEEEEECCcHHHH----------HHHHHHHccC---CcEEEEEEeCCCc--hhHHHHHHHHHHhCCCCCEEEEEECCCc
Confidence            46999999997322          1122233332   5999999998754  33445666666654  899999999999


Q ss_pred             CCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293          109 VFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR  158 (162)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~  158 (162)
                      .+.....  .+.+++.+...+   .+++++||++|.|+++++.++.+.+.
T Consensus       163 ~~~~~v~--~~~~~~~~~~~~---~~~~~vSA~~g~gi~eL~~~l~~~~~  207 (535)
T 3dpu_A          163 NPSYNIE--QKKINERFPAIE---NRFHRISCKNGDGVESIAKSLKSAVL  207 (535)
T ss_dssp             CTTCCCC--HHHHHHHCGGGT---TCEEECCC-----CTTHHHHHHHHHT
T ss_pred             ccccccC--HHHHHHHHHhcC---CceEEEecCcccCHHHHHHHHHHHHh
Confidence            7543221  123344444333   47999999999999999999988664

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=99.35  E-value=2.7e-12  Score=94.08  Aligned_cols=109  Identities=17%  Similarity=0.205  Sum_probs=71.8

Q ss_pred             CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCC
Q 031293           30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV  109 (162)
Q Consensus        30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~  109 (162)
                      +..+.++||||++..          ..   ..   ...+|++++|+|+..+.....  +...  ...+|.++|+||+|+.
T Consensus       171 ~~~~iiiDTpGi~~~----------~~---~~---~~~aD~vl~V~d~~~~~~~~~--l~~~--~~~~p~ivVlNK~Dl~  230 (355)
T 3p32_A          171 GFDVILIETVGVGQS----------EV---AV---ANMVDTFVLLTLARTGDQLQG--IKKG--VLELADIVVVNKADGE  230 (355)
T ss_dssp             TCCEEEEEECSCSSH----------HH---HH---HTTCSEEEEEEESSTTCTTTT--CCTT--SGGGCSEEEEECCCGG
T ss_pred             CCCEEEEeCCCCCcH----------HH---HH---HHhCCEEEEEECCCCCccHHH--HHHh--HhhcCCEEEEECCCCc
Confidence            456999999998432          11   11   145699999999864321111  0010  1246999999999997


Q ss_pred             CcHHHHHHHHHHHHHHHhcC----CCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293          110 FPIDVARRAMQIEESLKANN----SLVQPVMMVSSKSGAGIRSLRTVLSKIAR  158 (162)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~----~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~  158 (162)
                      .........+.+.+.+....    ....+++++||++|.|+++++++|.+.+.
T Consensus       231 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~  283 (355)
T 3p32_A          231 HHKEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQ  283 (355)
T ss_dssp             GHHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHH
Confidence            65555555555555543322    11258999999999999999999988764

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=99.34  E-value=8.3e-12  Score=88.72  Aligned_cols=103  Identities=15%  Similarity=0.216  Sum_probs=71.0

Q ss_pred             EEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcHHH
Q 031293           35 LVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDV  114 (162)
Q Consensus        35 ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~  114 (162)
                      +-+.|||-            .+..++.......+|+++.|+|++.+.......+.+++  .++|.++|+||+|+.+....
T Consensus         3 i~w~PGhm------------~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--~~kp~ilVlNK~DL~~~~~~   68 (282)
T 1puj_A            3 IQWFPGHM------------AKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--KNKPRIMLLNKADKADAAVT   68 (282)
T ss_dssp             ------CT------------THHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--SSSCEEEEEECGGGSCHHHH
T ss_pred             CcCCchHH------------HHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--CCCCEEEEEECcccCCHHHH
Confidence            55789991            24456666667788999999999998777654554444  47899999999999975443


Q ss_pred             HHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293          115 ARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR  158 (162)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~  158 (162)
                      +.    +.+.+...+   .+++++||.++.|++++++.+.+.++
T Consensus        69 ~~----~~~~~~~~g---~~~i~iSA~~~~gi~~L~~~i~~~l~  105 (282)
T 1puj_A           69 QQ----WKEHFENQG---IRSLSINSVNGQGLNQIVPASKEILQ  105 (282)
T ss_dssp             HH----HHHHHHTTT---CCEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred             HH----HHHHHHhcC---CcEEEEECCCcccHHHHHHHHHHHHH
Confidence            33    333343322   38999999999999999998877654

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=99.32  E-value=1.2e-11  Score=87.36  Aligned_cols=107  Identities=18%  Similarity=0.123  Sum_probs=69.5

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT   77 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~   77 (162)
                      |+|+|++. ....++..+++|.....+..   +.++.+|||||++......   +.+...+..++. ...+|++++|+|.
T Consensus        55 Lin~l~~~-~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~---~~~~~~i~~~~~-~~~~d~il~v~~~  129 (270)
T 1h65_A           55 TVNSIIGE-RVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYIN---DMALNIIKSFLL-DKTIDVLLYVDRL  129 (270)
T ss_dssp             HHHHHHTS-CCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEEC---HHHHHHHHHHTT-TCEECEEEEEEES
T ss_pred             HHHHHhCC-CcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccch---HHHHHHHHHHhh-cCCCCEEEEEEeC
Confidence            58999988 45677888888875544333   4469999999996542111   111222333432 3467999999776


Q ss_pred             CC-CCCccHHHHHHHHHHh-C----CceEEEEeccCCCCcH
Q 031293           78 KW-GVKPRDHELISLMERS-Q----TKYQVVLTKTDTVFPI  112 (162)
Q Consensus        78 ~~-~~~~~~~~~~~~l~~~-~----~~~ivv~nK~Dl~~~~  112 (162)
                      .. .+...+..++..+... +    .|+++|+||+|+.++.
T Consensus       130 d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~  170 (270)
T 1h65_A          130 DAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPD  170 (270)
T ss_dssp             SCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGG
T ss_pred             CCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcC
Confidence            43 4555555666666543 3    6899999999997543

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=99.31  E-value=4.7e-11  Score=83.70  Aligned_cols=120  Identities=18%  Similarity=0.126  Sum_probs=71.6

Q ss_pred             CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHH-----HHHHHHhCCceEEEEec
Q 031293           31 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHEL-----ISLMERSQTKYQVVLTK  105 (162)
Q Consensus        31 ~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~-----~~~l~~~~~~~ivv~nK  105 (162)
                      ..+.++||||....      .. +............. +++++++|+.......+..-     .......++|+++|+||
T Consensus       109 ~d~iiiDtpG~~~~------~~-~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK  180 (262)
T 1yrb_A          109 NDYVLIDTPGQMET------FL-FHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNK  180 (262)
T ss_dssp             CSEEEEECCSSHHH------HH-HSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECC
T ss_pred             CCEEEEeCCCccch------hh-hhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEec
Confidence            36999999998211      00 00111122223344 78899999875544433221     12223447899999999


Q ss_pred             cCCCCcHHHHHHHHHHH------HH------------------HHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhhh
Q 031293          106 TDTVFPIDVARRAMQIE------ES------------------LKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARF  159 (162)
Q Consensus       106 ~Dl~~~~~~~~~~~~~~------~~------------------~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~~  159 (162)
                      +|+..........+.++      +.                  +...+ ...+++++||++|.|+++++++|.+.++.
T Consensus       181 ~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~SA~~~~gi~~l~~~i~~~~~~  257 (262)
T 1yrb_A          181 VDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVL-PPVRVLYLSAKTREGFEDLETLAYEHYCT  257 (262)
T ss_dssp             GGGCCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHS-CCCCCEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             ccccccccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhc-CcccceEEEecCcccHHHHHHHHHHHhcc
Confidence            99986543322222111      01                  12222 12489999999999999999999987653

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=99.31  E-value=2.1e-11  Score=85.74  Aligned_cols=105  Identities=19%  Similarity=0.192  Sum_probs=67.9

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEE--e-CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFK--L-GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT   77 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~--~-~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~   77 (162)
                      |+|+|++. ..+.++..+++|.......  . +.++.++||||+++.....   +.+...+..++. ...+|++++|++.
T Consensus        52 Lin~l~~~-~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~---~~~~~~i~~~l~-~~~~~~il~V~~~  126 (262)
T 3def_A           52 TVNSLIGE-QVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVN---HQALELIKGFLV-NRTIDVLLYVDRL  126 (262)
T ss_dssp             HHHHHHTS-CCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTEEC---HHHHHHHHHHTT-TCEECEEEEEEES
T ss_pred             HHHHHhCC-CCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcccch---HHHHHHHHHHHh-cCCCCEEEEEEcC
Confidence            57999988 4567788888887555433  2 4569999999996542111   122233444443 3467999999776


Q ss_pred             CC-CCCccHHHHHHHHHHh-C----CceEEEEeccCCCC
Q 031293           78 KW-GVKPRDHELISLMERS-Q----TKYQVVLTKTDTVF  110 (162)
Q Consensus        78 ~~-~~~~~~~~~~~~l~~~-~----~~~ivv~nK~Dl~~  110 (162)
                      .. .+...+..+++.+... +    .|+++|+||+|+.+
T Consensus       127 d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~  165 (262)
T 3def_A          127 DVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSP  165 (262)
T ss_dssp             SCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCC
T ss_pred             CCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCC
Confidence            43 3545555666666543 2    48999999999863

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.30  E-value=2e-11  Score=90.97  Aligned_cols=142  Identities=21%  Similarity=0.280  Sum_probs=88.2

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEE--EEeC--CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEee
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINF--FKLG--TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLID   76 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~--~~~~--~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid   76 (162)
                      |+|+|++.  ..+++.+|.+|.....  ...+  ..++++|+||+.......      ..+...+++....++.++.++|
T Consensus       173 LL~~Lsg~--~~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~------~~L~~~fl~~~era~~lL~vvD  244 (416)
T 1udx_A          173 LLAAMTRA--HPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEG------KGLGLEFLRHIARTRVLLYVLD  244 (416)
T ss_dssp             HHHHHCSS--CCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGS------CCSCHHHHHHHTSSSEEEEEEE
T ss_pred             HHHHHHcC--CccccCcccceecceeeEEEecCcceEEEEeccccccchhhh------hhhhHHHHHHHHHHHhhhEEeC
Confidence            57888887  3467888888765443  3332  568999999984421000      0001112222345699999999


Q ss_pred             cC-CCCCccHHHHHHHHHH-----hCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHH
Q 031293           77 TK-WGVKPRDHELISLMER-----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLR  150 (162)
Q Consensus        77 ~~-~~~~~~~~~~~~~l~~-----~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~  150 (162)
                      .. .++.... ...+.+..     ...|.++++||+|+....    ..+.+.+.+...+   .+++++||++++|+++++
T Consensus       245 ls~~~~~~ls-~g~~el~~la~aL~~~P~ILVlNKlDl~~~~----~~~~l~~~l~~~g---~~vi~iSA~~g~gi~eL~  316 (416)
T 1udx_A          245 AADEPLKTLE-TLRKEVGAYDPALLRRPSLVALNKVDLLEEE----AVKALADALAREG---LAVLPVSALTGAGLPALK  316 (416)
T ss_dssp             TTSCHHHHHH-HHHHHHHHHCHHHHHSCEEEEEECCTTSCHH----HHHHHHHHHHTTT---SCEEECCTTTCTTHHHHH
T ss_pred             CccCCHHHHH-HHHHHHHHHhHHhhcCCEEEEEECCChhhHH----HHHHHHHHHHhcC---CeEEEEECCCccCHHHHH
Confidence            86 2111111 11222221     268999999999997642    2234444444333   489999999999999999


Q ss_pred             HHHHHhhh
Q 031293          151 TVLSKIAR  158 (162)
Q Consensus       151 ~~i~~~~~  158 (162)
                      ++|.+.+.
T Consensus       317 ~~i~~~l~  324 (416)
T 1udx_A          317 EALHALVR  324 (416)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99988765

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=99.29  E-value=5.3e-12  Score=97.23  Aligned_cols=88  Identities=18%  Similarity=0.244  Sum_probs=56.3

Q ss_pred             ceEEEcCCCCcccccCHHHH-HHHHHHHHHHHhcCcccceeEEEeecCC-CCCccHHHHHHHHHHhCCceEEEEeccCCC
Q 031293           32 KLCLVDLPGYGFAYAKEEVK-DAWEELVKEYVSTRVSLKRVCLLIDTKW-GVKPRDHELISLMERSQTKYQVVLTKTDTV  109 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~vi~vid~~~-~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~  109 (162)
                      ++.+|||||+.........+ ..+......++   ..+|++++|+|+.. +....+..++..+...+.|+++|+||+|+.
T Consensus       155 ~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l---~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~pvilVlNK~Dl~  231 (550)
T 2qpt_A          155 SISIIDTPGILSGAKQRVSRGYDFPAVLRWFA---ERVDLIILLFDAHKLEISDEFSEAIGALRGHEDKIRVVLNKADMV  231 (550)
T ss_dssp             HCEEEECCCBCC-------CCSCHHHHHHHHH---HHCSEEEEEEETTSCCCCHHHHHHHHHTTTCGGGEEEEEECGGGS
T ss_pred             CEEEEECcCCCCcchhHHHHHhhHHHHHHHHH---HhCCEEEEEEeCCcCCCCHHHHHHHHHHHhcCCCEEEEEECCCcc
Confidence            58999999996421100000 00122333333   34599999999987 455666667777766678999999999999


Q ss_pred             CcHHHHHHHHHHH
Q 031293          110 FPIDVARRAMQIE  122 (162)
Q Consensus       110 ~~~~~~~~~~~~~  122 (162)
                      +..+.....+.+.
T Consensus       232 ~~~el~~~~~~l~  244 (550)
T 2qpt_A          232 ETQQLMRVYGALM  244 (550)
T ss_dssp             CHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhh
Confidence            7766655555443

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=99.27  E-value=1e-11  Score=90.52  Aligned_cols=109  Identities=18%  Similarity=0.128  Sum_probs=69.3

Q ss_pred             CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCC
Q 031293           30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV  109 (162)
Q Consensus        30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~  109 (162)
                      +.++.++||||++..          ..   ..   ...+|++++|+|+..+....   .+.. ...++|.++|+||+|+.
T Consensus       148 ~~~i~liDTpG~~~~----------~~---~~---~~~aD~vl~Vvd~~~~~~~~---~l~~-~~~~~p~ivv~NK~Dl~  207 (341)
T 2p67_A          148 GYDVVIVETVGVGQS----------ET---EV---ARMVDCFISLQIAGGGDDLQ---GIKK-GLMEVADLIVINKDDGD  207 (341)
T ss_dssp             TCSEEEEEEECCTTH----------HH---HH---HTTCSEEEEEECC------C---CCCH-HHHHHCSEEEECCCCTT
T ss_pred             CCCEEEEeCCCccch----------HH---HH---HHhCCEEEEEEeCCccHHHH---HHHH-hhhcccCEEEEECCCCC
Confidence            457999999998432          11   11   14579999999986432111   0110 11256899999999998


Q ss_pred             CcHHHHHHHHHHHHHHHhcCC----CCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293          110 FPIDVARRAMQIEESLKANNS----LVQPVMMVSSKSGAGIRSLRTVLSKIAR  158 (162)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~----~~~~i~~~Sa~~~~g~~~l~~~i~~~~~  158 (162)
                      .........+.+++.+.....    ...+++++||++|.|+++++++|.+.+.
T Consensus       208 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~  260 (341)
T 2p67_A          208 NHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT  260 (341)
T ss_dssp             CHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence            654454444455554443221    1247899999999999999999988654

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=99.27  E-value=1e-11  Score=91.29  Aligned_cols=98  Identities=15%  Similarity=0.168  Sum_probs=63.7

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEE--e-CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFK--L-GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT   77 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~--~-~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~   77 (162)
                      |||+|++.  .+.++++|++|++.....  . +.++.++||||+-....  ..    .....+++...+.+|++++|+|+
T Consensus        88 L~n~Lt~~--~~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~--~~----~~~g~~~l~~i~~ad~il~vvD~  159 (376)
T 4a9a_A           88 LLSKLTGT--ESEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAK--DG----RGRGKQVIAVARTCNLLFIILDV  159 (376)
T ss_dssp             HHHHHHSB--CCCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----------CHHHHHHHHHHHCSEEEEEEET
T ss_pred             HHHHHhCC--CCcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCch--hh----hHHHHHHHHHHHhcCcccccccc
Confidence            68999998  477899999999877533  3 56799999999843311  11    12234455555677999999999


Q ss_pred             CCCCCccHHH-HHHHHHHh-----CCceEEEEeccCC
Q 031293           78 KWGVKPRDHE-LISLMERS-----QTKYQVVLTKTDT  108 (162)
Q Consensus        78 ~~~~~~~~~~-~~~~l~~~-----~~~~ivv~nK~Dl  108 (162)
                      +++..  +.+ +...|...     ..|.++++||+|.
T Consensus       160 ~~p~~--~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~  194 (376)
T 4a9a_A          160 NKPLH--HKQIIEKELEGVGIRLNKTPPDILIKKKEK  194 (376)
T ss_dssp             TSHHH--HHHHHHHHHHHTTEEETCCCCCEEEEECSS
T ss_pred             CccHH--HHHHHHHHHHHhhHhhccCChhhhhhHhhh
Confidence            86531  222 22333322     3567777777774

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.27  E-value=1e-12  Score=89.72  Aligned_cols=74  Identities=16%  Similarity=0.263  Sum_probs=46.7

Q ss_pred             CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhc-CcccceeEEEeecC---CCCCccHHHHHHHHHH------hCCce
Q 031293           30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVST-RVSLKRVCLLIDTK---WGVKPRDHELISLMER------SQTKY   99 (162)
Q Consensus        30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~vi~vid~~---~~~~~~~~~~~~~l~~------~~~~~   99 (162)
                      ..++.++||||+...          ...+..++.. ...++++++|+|+.   ..+.....++...+..      .++|+
T Consensus        54 ~~~~~l~Dt~G~~~~----------~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  123 (218)
T 1nrj_B           54 GSGVTLVDFPGHVKL----------RYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDI  123 (218)
T ss_dssp             GSSCEEEECCCCGGG----------THHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCE
T ss_pred             CceEEEEECCCcHHH----------HHHHHHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCE
Confidence            446999999999332          2333444332 23468999999988   2333333333333332      37899


Q ss_pred             EEEEeccCCCCcHH
Q 031293          100 QVVLTKTDTVFPID  113 (162)
Q Consensus       100 ivv~nK~Dl~~~~~  113 (162)
                      ++|+||+|+.+...
T Consensus       124 ilv~nK~Dl~~~~~  137 (218)
T 1nrj_B          124 LIACNKSELFTARP  137 (218)
T ss_dssp             EEEEECTTSTTCCC
T ss_pred             EEEEEchHhcccCC
Confidence            99999999986543

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=99.25  E-value=6.9e-12  Score=84.19  Aligned_cols=109  Identities=13%  Similarity=0.035  Sum_probs=62.4

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHHHHHH----hCCceEEEEecc
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKT  106 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~~l~~----~~~~~ivv~nK~  106 (162)
                      ++.++||+|.....         ..+...+.+   .++++++|.|....-+-.. ..+...+..    .++|+++|.||+
T Consensus        57 ~l~~~Dt~~~~~~~---------~~~~~~~~~---~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~  124 (192)
T 2cjw_A           57 TIILLDMWENKGEN---------EWLHDHCMQ---VGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKS  124 (192)
T ss_dssp             EEEEECCCCC-------------CTTGGGHHH---HCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECT
T ss_pred             EEEEEEeccCcchh---------hhHHHhhcc---cCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEech
Confidence            36789999973210         001122222   3488888888764211111 123333332    268999999999


Q ss_pred             CCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293          107 DTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  157 (162)
Q Consensus       107 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~  157 (162)
                      |+........  +..+......+   .+++++||++|.|+++++.++.+.+
T Consensus       125 Dl~~~r~v~~--~~~~~~a~~~~---~~~~e~SA~~g~~v~~lf~~l~~~~  170 (192)
T 2cjw_A          125 DLVRXREVSV--SEGRAXAVVFD---XKFIETSAAVQHNVKELFEGIVRQV  170 (192)
T ss_dssp             TCGGGCCSCH--HHHHHHHHHTT---CEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             hhhccccccH--HHHHHHHHHhC---CceEEeccccCCCHHHHHHHHHHHH
Confidence            9864221111  11111222222   4789999999999999999998765

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=99.22  E-value=7.6e-11  Score=84.94  Aligned_cols=115  Identities=14%  Similarity=0.131  Sum_probs=68.0

Q ss_pred             CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHH---H--hCCceEEEEec
Q 031293           31 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLME---R--SQTKYQVVLTK  105 (162)
Q Consensus        31 ~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~---~--~~~~~ivv~nK  105 (162)
                      -++.+|||||+..-..+.     +  ....|++   +++++++|+|+.........++.+++.   .  .++|++++.||
T Consensus        46 v~LqIWDTAGQErf~~~~-----l--~~~~yyr---~a~~~IlV~Ditd~~~~~~~~l~~~l~~~~~~~~~ipillvgNK  115 (331)
T 3r7w_B           46 IDLAVMELPGQLNYFEPS-----Y--DSERLFK---SVGALVYVIDSQDEYINAITNLAMIIEYAYKVNPSINIEVLIHK  115 (331)
T ss_dssp             SCEEEEECCSCSSSCCCS-----H--HHHHHHT---TCSEEEEECCCSSCTTHHHHHHHHHHHHHHHHCTTCEEEEECCC
T ss_pred             EEEEEEECCCchhccchh-----h--hhhhhcc---CCCEEEEEEECCchHHHHHHHHHHHHHHHhhcCCCCcEEEEEEC
Confidence            469999999993321000     0  1344544   459999999998763222222322232   2  36899999999


Q ss_pred             cCCCCcHHHHHHHHHHHH----HHHhcC--CCCCCeEEeecCCCCCHHHHHHHHHHh
Q 031293          106 TDTVFPIDVARRAMQIEE----SLKANN--SLVQPVMMVSSKSGAGIRSLRTVLSKI  156 (162)
Q Consensus       106 ~Dl~~~~~~~~~~~~~~~----~~~~~~--~~~~~i~~~Sa~~~~g~~~l~~~i~~~  156 (162)
                      +|+.++.........+..    .+...+  ....+++.+||++ .++.+.|..+.+.
T Consensus       116 ~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eTSAkd-~nV~eAFs~iv~~  171 (331)
T 3r7w_B          116 VDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIFD-HSIYEAFSRIVQK  171 (331)
T ss_dssp             CCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECCCSSS-SHHHHHHHHHHTT
T ss_pred             cccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEeccCC-CcHHHHHHHHHHH
Confidence            999865432211112222    122111  0235789999998 5899999988753

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=99.16  E-value=3.2e-11  Score=97.02  Aligned_cols=102  Identities=19%  Similarity=0.128  Sum_probs=68.5

Q ss_pred             CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCCC
Q 031293           31 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF  110 (162)
Q Consensus        31 ~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~  110 (162)
                      ..+.+||||||.+.          ...+..++   +.+|++++|+|+.++...++...+..+...++|+++|+||+|+..
T Consensus        98 ~~i~liDTPG~~df----------~~~~~~~l---~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~ilviNK~D~~~  164 (842)
T 1n0u_A           98 FLINLIDSPGHVDF----------SSEVTAAL---RVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDRAL  164 (842)
T ss_dssp             EEEEEECCCCCCSS----------CHHHHHHH---HTCSEEEEEEETTTBSCHHHHHHHHHHHHTTCEEEEEEECHHHHH
T ss_pred             ceEEEEECcCchhh----------HHHHHHHH---HhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCeEEEEECCCcch
Confidence            45899999999332          22233333   456999999999998888877777666667899999999999862


Q ss_pred             ------cH----HHHHHHHHHHHHHHhc----------CCCCCCeEEeecCCCCC
Q 031293          111 ------PI----DVARRAMQIEESLKAN----------NSLVQPVMMVSSKSGAG  145 (162)
Q Consensus       111 ------~~----~~~~~~~~~~~~~~~~----------~~~~~~i~~~Sa~~~~g  145 (162)
                            ..    .....++.++..+...          .+...++.+.|+++|.|
T Consensus       165 ~e~~~~~~e~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~p~~~~v~~~sa~~g~~  219 (842)
T 1n0u_A          165 LELQVSKEDLYQTFARTVESVNVIVSTYADEVLGDVQVYPARGTVAFGSGLHGWA  219 (842)
T ss_dssp             HTSCCCHHHHHHHHHHHHHHHHHHHHHHSCGGGCCCCCCGGGTCEEEEETTTTEE
T ss_pred             hhhccCHHHHHHHHHHHHHHHHHHHhhccccccCceeeceEEeeeEEeecccccc
Confidence                  11    2334444454444321          11123678889998865

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.15  E-value=2.8e-10  Score=81.62  Aligned_cols=121  Identities=18%  Similarity=0.273  Sum_probs=62.4

Q ss_pred             ceEEEcCCCCcccccC----HHHHHHHHHHHHHHHhcCc----------ccceeEEEeecCC-CCCccHHHHHHHHHHhC
Q 031293           32 KLCLVDLPGYGFAYAK----EEVKDAWEELVKEYVSTRV----------SLKRVCLLIDTKW-GVKPRDHELISLMERSQ   96 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~----~~~~~~~~~~~~~~~~~~~----------~~~~vi~vid~~~-~~~~~~~~~~~~l~~~~   96 (162)
                      .++++||||+|.....    ....+........++...+          .++++++++++.. ++...+.+++..+. ..
T Consensus        77 ~ltv~Dt~g~~~~~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~~~l~~l~-~~  155 (301)
T 2qnr_A           77 RLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH-NK  155 (301)
T ss_dssp             EEEEEEEC-----------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHHHHHHHHT-TT
T ss_pred             CcchhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHHHHHHHHH-hc
Confidence            5899999999643110    0111111112223433332          1234666666543 46666655555443 25


Q ss_pred             CceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293           97 TKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  157 (162)
Q Consensus        97 ~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~  157 (162)
                      .|+++|+||.|+..+.+.....+.+++.+...+   .+++++||+++ |+++++..+.+.+
T Consensus       156 ~~iilV~~K~Dl~~~~e~~~~~~~~~~~~~~~~---~~~~e~Sa~~~-~v~e~f~~l~~~i  212 (301)
T 2qnr_A          156 VNIVPVIAKADTLTLKERERLKKRILDEIEEHN---IKIYHLPDAES-DEDEDFKEQTRLL  212 (301)
T ss_dssp             SCEEEEECCGGGSCHHHHHHHHHHHHHHHHHTT---CCCCCCC----------CHHHHHHH
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHcC---CeEEecCCccc-cccHHHHHHHHHh
Confidence            789999999999876655444456666666554   48999999999 9999988877644

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=99.13  E-value=4e-10  Score=82.34  Aligned_cols=109  Identities=21%  Similarity=0.226  Sum_probs=65.1

Q ss_pred             CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCC
Q 031293           30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV  109 (162)
Q Consensus        30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~  109 (162)
                      +..+.++||||++..          ...+      ...+|++++|+|+..+...   +.+.. .-...|.++|+||+|+.
T Consensus       166 ~~~~iliDT~Gi~~~----------~~~l------~~~~d~vl~V~d~~~~~~~---~~i~~-~il~~~~ivVlNK~Dl~  225 (349)
T 2www_A          166 GYDIILIETVGVGQS----------EFAV------ADMVDMFVLLLPPAGGDEL---QGIKR-GIIEMADLVAVTKSDGD  225 (349)
T ss_dssp             TCSEEEEECCCC--C----------HHHH------HTTCSEEEEEECCC----------------CCSCSEEEECCCSGG
T ss_pred             CCCEEEEECCCcchh----------hhhH------HhhCCEEEEEEcCCcchhH---HHhHH-HHHhcCCEEEEeeecCC
Confidence            446899999998432          1111      1246999999998764211   11111 11357889999999997


Q ss_pred             CcHHHHHHHHHHHHHHHhcCC----CCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293          110 FPIDVARRAMQIEESLKANNS----LVQPVMMVSSKSGAGIRSLRTVLSKIAR  158 (162)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~----~~~~i~~~Sa~~~~g~~~l~~~i~~~~~  158 (162)
                      +..........+...+.....    ...+++++||++|.|+++++++|.+.++
T Consensus       226 ~~~~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~  278 (349)
T 2www_A          226 LIVPARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD  278 (349)
T ss_dssp             GHHHHHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             CchhHHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence            543333333344333322111    1247899999999999999999988654

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.12  E-value=2.3e-10  Score=85.32  Aligned_cols=125  Identities=19%  Similarity=0.308  Sum_probs=65.3

Q ss_pred             ceEEEcCCCCcccccC----HHHHHHHHHHHHHHHhc----------CcccceeEEEeecC-CCCCccHHHHHHHHHHhC
Q 031293           32 KLCLVDLPGYGFAYAK----EEVKDAWEELVKEYVST----------RVSLKRVCLLIDTK-WGVKPRDHELISLMERSQ   96 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~----~~~~~~~~~~~~~~~~~----------~~~~~~vi~vid~~-~~~~~~~~~~~~~l~~~~   96 (162)
                      .++++|+||++.....    ....+.....+..++..          ...++++++++++. .++...+..++..+.. +
T Consensus        89 ~Ltv~Dt~g~~~~~~~~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~~-~  167 (418)
T 2qag_C           89 LLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-K  167 (418)
T ss_dssp             EEEEEECC-----------CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHTT-T
T ss_pred             ceeeeechhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHhc-c
Confidence            5899999999764211    11111112222333211          12245677777765 5777777777777764 7


Q ss_pred             CceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhhhh
Q 031293           97 TKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARFA  160 (162)
Q Consensus        97 ~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~~~  160 (162)
                      +|+|+|+||+|+....++....+.+.+.+..++   .+++.+|+.++.++++++..+.+.++|.
T Consensus       168 v~iIlVinK~Dll~~~ev~~~k~~i~~~~~~~~---i~~~~~sa~~~~~v~~~~~~l~~~iPfa  228 (418)
T 2qag_C          168 VNIIPLIAKADTLTPEECQQFKKQIMKEIQEHK---IKIYEFPETDDEEENKLVKKIKDRLPLA  228 (418)
T ss_dssp             SEEEEEEESTTSSCHHHHHHHHHHHHHHHHHHT---CCCCCCC-----------------CCEE
T ss_pred             CcEEEEEEcccCccHHHHHHHHHHHHHHHHHcC---CeEEeCCCCCCcCHHHHHHHHHhhCCcc
Confidence            899999999999987777766677777777665   4889999999999999998888877764

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=99.11  E-value=1.2e-13  Score=101.61  Aligned_cols=123  Identities=12%  Similarity=0.119  Sum_probs=75.3

Q ss_pred             ChhcccCC-----CCceeccCCCCcceEEEEEEeCCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEe
Q 031293            1 MLNALTRQ-----WGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLI   75 (162)
Q Consensus         1 lin~L~~~-----~~~~~~~~~~g~t~~~~~~~~~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vi   75 (162)
                      |+|+|++.     ...+.++..||+|++...+.++..+.++||||++....-....  ....+..++ ....++.+++++
T Consensus       176 liN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~~~liDtPG~~~~~~~~~~l--~~~~l~~~~-~~~~i~~~~~~l  252 (368)
T 3h2y_A          176 FINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEESSLYDTPGIINHHQMAHYV--GKQSLKLIT-PTKEIKPMVFQL  252 (368)
T ss_dssp             HHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSSCEEEECCCBCCTTSGGGGS--CHHHHHHHS-CSSCCCCEEEEE
T ss_pred             HHHHHHhhhccccccceecCCCCCeecceEEEEecCCeEEEeCCCcCcHHHHHHHh--hHHHHHHhc-cccccCceEEEE
Confidence            57888875     2345689999999999988887779999999996542111000  022233332 234568899999


Q ss_pred             ecCCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHH
Q 031293           76 DTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLK  126 (162)
Q Consensus        76 d~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~  126 (162)
                      ++...........++.+...+.|+++++||+|.++....+...+.+++.++
T Consensus       253 ~~~~~~~~g~l~~~d~l~~~~~~~~~v~nk~d~~~~~~~~~~~~~~~~~~g  303 (368)
T 3h2y_A          253 NEEQTLFFSGLARFDYVSGGRRAFTCHFSNRLTIHRTKLEKADELYKNHAG  303 (368)
T ss_dssp             CTTEEEEETTTEEEEEEESSSEEEEEEECTTSCEEEEEHHHHHHHHHHHBT
T ss_pred             cCCCEEEEcceEEEEEecCCCceEEEEecCccccccccHHHHHHHHHHHhC
Confidence            884321111111223344457899999999999977777766666665543

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=99.11  E-value=5.8e-10  Score=79.95  Aligned_cols=87  Identities=18%  Similarity=0.184  Sum_probs=61.2

Q ss_pred             CcccceeEEEeecCCCC-CccH-HHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCC
Q 031293           65 RVSLKRVCLLIDTKWGV-KPRD-HELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKS  142 (162)
Q Consensus        65 ~~~~~~vi~vid~~~~~-~~~~-~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~  142 (162)
                      ..++|.+++|+|++.+. +... ..++..+...++|+++|+||+|+.++..... .+.+.+.....+   .+++++||++
T Consensus        77 ~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~~~~~~ilV~NK~DL~~~~~v~~-~~~~~~~~~~~g---~~~~~~SA~~  152 (302)
T 2yv5_A           77 VANVDRVIIVETLKMPEFNNYLLDNMLVVYEYFKVEPVIVFNKIDLLNEEEKKE-LERWISIYRDAG---YDVLKVSAKT  152 (302)
T ss_dssp             EESCCEEEEEECSTTTTCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHH-HHHHHHHHHHTT---CEEEECCTTT
T ss_pred             HHhcCEEEEEEECCCCCCCHHHHHHHHHHHHhCCCCEEEEEEcccCCCccccHH-HHHHHHHHHHCC---CeEEEEECCC
Confidence            56779999999998764 3322 2345556667899999999999986543211 223333333333   3899999999


Q ss_pred             CCCHHHHHHHHHH
Q 031293          143 GAGIRSLRTVLSK  155 (162)
Q Consensus       143 ~~g~~~l~~~i~~  155 (162)
                      |.|+++|++.+..
T Consensus       153 g~gi~~L~~~l~G  165 (302)
T 2yv5_A          153 GEGIDELVDYLEG  165 (302)
T ss_dssp             CTTHHHHHHHTTT
T ss_pred             CCCHHHHHhhccC
Confidence            9999999988764

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=99.10  E-value=9.6e-11  Score=78.87  Aligned_cols=108  Identities=13%  Similarity=0.067  Sum_probs=66.0

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHHHHHH---hCCceEEEEeccC
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTD  107 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~~l~~---~~~~~ivv~nK~D  107 (162)
                      .+.++||||+...          ......+..   .++++++|.|.....+... ..++..+..   .+.|+++|+||+|
T Consensus        55 ~~~i~Dt~g~~~~----------~~~~~~~~~---~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~D  121 (199)
T 2f9l_A           55 KAQIWDTAGQERY----------RRITSAYYR---GAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD  121 (199)
T ss_dssp             EEEEEECSSGGGT----------TCCCHHHHT---TCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTT
T ss_pred             EEEEEECCCchhh----------hhhhHHHHh---cCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcc
Confidence            4678999997321          111223332   3488999999875322111 123333332   3578999999999


Q ss_pred             CCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293          108 TVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  157 (162)
Q Consensus       108 l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~  157 (162)
                      +.+.....  .+..+......+   ..++.+||+++.|+++++++|.+.+
T Consensus       122 l~~~~~~~--~~~a~~l~~~~~---~~~~d~Sal~~~~i~~l~~~l~~~~  166 (199)
T 2f9l_A          122 LRHLRAVP--TDEARAFAEKNN---LSFIETSALDSTNVEEAFKNILTEI  166 (199)
T ss_dssp             CGGGCCSC--HHHHHHHHHHTT---CEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             cccccCcC--HHHHHHHHHHcC---CeEEEEeCCCCCCHHHHHHHHHHHH
Confidence            86322110  012233333332   4788899999999999999998765

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=99.09  E-value=3.1e-10  Score=83.53  Aligned_cols=101  Identities=12%  Similarity=0.032  Sum_probs=67.4

Q ss_pred             HHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcHH-HHHHHHHHHHHHHhcCC
Q 031293           52 DAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPID-VARRAMQIEESLKANNS  130 (162)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~  130 (162)
                      +.+..++.++..+   ++++++|+|++++......++.+.+  .++|+++|+||+|+.+... .+...+++++.+...+.
T Consensus        59 e~f~~~L~~~~~~---~~lil~VvD~~d~~~s~~~~l~~~l--~~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~~~g~  133 (369)
T 3ec1_A           59 DDFLSMLHRIGES---KALVVNIVDIFDFNGSFIPGLPRFA--ADNPILLVGNKADLLPRSVKYPKLLRWMRRMAEELGL  133 (369)
T ss_dssp             CHHHHHHHHHHHH---CCEEEEEEETTCSGGGCCSSHHHHC--TTSCEEEEEECGGGSCTTCCHHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHhhcc---CcEEEEEEECCCCCCchhhHHHHHh--CCCCEEEEEEChhcCCCccCHHHHHHHHHHHHHHcCC
Confidence            3456666666443   4899999999875433322333332  2789999999999986431 22233344444555544


Q ss_pred             CCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293          131 LVQPVMMVSSKSGAGIRSLRTVLSKIA  157 (162)
Q Consensus       131 ~~~~i~~~Sa~~~~g~~~l~~~i~~~~  157 (162)
                      ...+++++||++|.|++++++.+.+..
T Consensus       134 ~~~~v~~iSA~~g~gi~~L~~~I~~~~  160 (369)
T 3ec1_A          134 CPVDVCLVSAAKGIGMAKVMEAINRYR  160 (369)
T ss_dssp             CCSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred             CcccEEEEECCCCCCHHHHHHHHHhhc
Confidence            334789999999999999999997654

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=99.08  E-value=4.9e-11  Score=83.89  Aligned_cols=86  Identities=12%  Similarity=0.067  Sum_probs=59.9

Q ss_pred             HHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEe
Q 031293           59 KEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMV  138 (162)
Q Consensus        59 ~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  138 (162)
                      ++......++|+++.|+|++.+.......+. ++   ++|.++|+||+|+++....+.+.    +.+...+   .++ ++
T Consensus        13 ~~~~~~l~~~D~vl~VvDar~P~~~~~~~l~-ll---~k~~iivlNK~DL~~~~~~~~~~----~~~~~~g---~~v-~i   80 (262)
T 3cnl_A           13 RQIKDLLRLVNTVVEVRDARAPFATSAYGVD-FS---RKETIILLNKVDIADEKTTKKWV----EFFKKQG---KRV-IT   80 (262)
T ss_dssp             HHHHHHHTTCSEEEEEEETTSTTTTSCTTSC-CT---TSEEEEEEECGGGSCHHHHHHHH----HHHHHTT---CCE-EE
T ss_pred             HHHHHHHhhCCEEEEEeeCCCCCcCcChHHH-hc---CCCcEEEEECccCCCHHHHHHHH----HHHHHcC---CeE-EE
Confidence            3344444667999999999987755432222 22   89999999999999754443333    3333333   367 99


Q ss_pred             ecCCCCCHHHHHHHHHHh
Q 031293          139 SSKSGAGIRSLRTVLSKI  156 (162)
Q Consensus       139 Sa~~~~g~~~l~~~i~~~  156 (162)
                      ||.++.|+++|++.+.+.
T Consensus        81 Sa~~~~gi~~L~~~l~~~   98 (262)
T 3cnl_A           81 THKGEPRKVLLKKLSFDR   98 (262)
T ss_dssp             CCTTSCHHHHHHHHCCCT
T ss_pred             ECCCCcCHHHHHHHHHHh
Confidence            999999999999887653

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.07  E-value=1.3e-09  Score=78.11  Aligned_cols=105  Identities=20%  Similarity=0.259  Sum_probs=68.4

Q ss_pred             CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCc-cH-HHHHHHHHHhCCceEEEEeccCC
Q 031293           31 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKP-RD-HELISLMERSQTKYQVVLTKTDT  108 (162)
Q Consensus        31 ~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~-~~-~~~~~~l~~~~~~~ivv~nK~Dl  108 (162)
                      .++.+||+  +...          ..+.+.|   .+++|++++|+|++.+... .. ..++..+...++|+++|+||+|+
T Consensus        63 ~~~~iwD~--qer~----------~~l~~~~---~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~~~~piilv~NK~DL  127 (301)
T 1u0l_A           63 GSGVIENV--LHRK----------NLLTKPH---VANVDQVILVVTVKMPETSTYIIDKFLVLAEKNELETVMVINKMDL  127 (301)
T ss_dssp             SSEEEEEE--CCCS----------CEETTTT---EESCCEEEEEECSSTTCCCHHHHHHHHHHHHHTTCEEEEEECCGGG
T ss_pred             CeEEEEEE--cccc----------ceeeccc---cccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEeHHHc
Confidence            36899999  3111          2222233   3567999999999875422 21 23444555568999999999999


Q ss_pred             CCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHH
Q 031293          109 VFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSK  155 (162)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~  155 (162)
                      .+....++    ..+.+..+... .+++++||++|.|+++++..+..
T Consensus       128 ~~~~~v~~----~~~~~~~~~~~-~~~~~~SAktg~gv~~lf~~l~g  169 (301)
T 1u0l_A          128 YDEDDLRK----VRELEEIYSGL-YPIVKTSAKTGMGIEELKEYLKG  169 (301)
T ss_dssp             CCHHHHHH----HHHHHHHHTTT-SCEEECCTTTCTTHHHHHHHHSS
T ss_pred             CCchhHHH----HHHHHHHHhhh-CcEEEEECCCCcCHHHHHHHhcC
Confidence            86544321    22222222212 58999999999999999988764

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=99.06  E-value=1.2e-10  Score=85.17  Aligned_cols=115  Identities=10%  Similarity=0.037  Sum_probs=69.8

Q ss_pred             CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCC--------ccHHHHHHH---HHH----
Q 031293           30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVK--------PRDHELISL---MER----   94 (162)
Q Consensus        30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~--------~~~~~~~~~---l~~----   94 (162)
                      +.++.+|||+|+..          +......|   .++++++++|+|.++.-+        ..-.+...+   +..    
T Consensus       192 ~~~l~iwDt~GQe~----------~r~~w~~y---f~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~  258 (353)
T 1cip_A          192 DLHFKMFDVGGQRS----------ERKKWIHC---FEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWF  258 (353)
T ss_dssp             TEEEEEEEECCSGG----------GGGGGGGG---CTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGG
T ss_pred             CeeEEEEeCCCchh----------hhHHHHHH---HhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccc
Confidence            34589999999921          12223333   345699999999875211        112222222   222    


Q ss_pred             hCCceEEEEeccCCCCcH-----------------HHHHHHHHHHHHHHhc----CCCCCCeEEeecCCCCCHHHHHHHH
Q 031293           95 SQTKYQVVLTKTDTVFPI-----------------DVARRAMQIEESLKAN----NSLVQPVMMVSSKSGAGIRSLRTVL  153 (162)
Q Consensus        95 ~~~~~ivv~nK~Dl~~~~-----------------~~~~~~~~~~~~~~~~----~~~~~~i~~~Sa~~~~g~~~l~~~i  153 (162)
                      .+.|+++++||+|+..+.                 ..++..+.+...+...    ......++++||+++.|+++++.++
T Consensus       259 ~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v  338 (353)
T 1cip_A          259 TDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAV  338 (353)
T ss_dssp             TTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             cCCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHH
Confidence            258999999999985221                 1223333333222222    1233578899999999999999999


Q ss_pred             HHhh
Q 031293          154 SKIA  157 (162)
Q Consensus       154 ~~~~  157 (162)
                      .+.+
T Consensus       339 ~~~i  342 (353)
T 1cip_A          339 TDVI  342 (353)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8755

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=99.06  E-value=4.3e-10  Score=82.75  Aligned_cols=99  Identities=16%  Similarity=0.104  Sum_probs=65.5

Q ss_pred             HHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHH--hCCceEEEEeccCCCCcHH-HHHHHHHHHHHHHhc
Q 031293           52 DAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMER--SQTKYQVVLTKTDTVFPID-VARRAMQIEESLKAN  128 (162)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~--~~~~~ivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~  128 (162)
                      +.+..+++++.++   .+++++|+|++++.    ..+...+.+  .++|+++|+||+|+.+... .+...++++......
T Consensus        57 e~f~~~l~~i~~~---~~~il~VvD~~d~~----~~~~~~l~~~~~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~~~  129 (368)
T 3h2y_A           57 DDFLRILNGIGKS---DALVVKIVDIFDFN----GSWLPGLHRFVGNNKVLLVGNKADLIPKSVKHDKVKHWMRYSAKQL  129 (368)
T ss_dssp             HHHHHHHHHHHHS---CCEEEEEEETTSHH----HHCCTTHHHHSSSSCEEEEEECGGGSCTTSCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhcc---CcEEEEEEECCCCc----ccHHHHHHHHhCCCcEEEEEEChhcCCcccCHHHHHHHHHHHHHHc
Confidence            4556677776554   37999999998632    222222322  2789999999999975432 222223444444444


Q ss_pred             CCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293          129 NSLVQPVMMVSSKSGAGIRSLRTVLSKIA  157 (162)
Q Consensus       129 ~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~  157 (162)
                      +....+++.+||++|.|++++++.|.+..
T Consensus       130 g~~~~~v~~iSA~~g~gi~~L~~~l~~~~  158 (368)
T 3h2y_A          130 GLKPEDVFLISAAKGQGIAELADAIEYYR  158 (368)
T ss_dssp             TCCCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             CCCcccEEEEeCCCCcCHHHHHhhhhhhc
Confidence            44334789999999999999999997643

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=99.04  E-value=4.4e-13  Score=98.68  Aligned_cols=123  Identities=13%  Similarity=0.092  Sum_probs=78.3

Q ss_pred             ChhcccCC----CCceeccCCCCcceEEEEEEeCCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEee
Q 031293            1 MLNALTRQ----WGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLID   76 (162)
Q Consensus         1 lin~L~~~----~~~~~~~~~~g~t~~~~~~~~~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid   76 (162)
                      |+|+|++.    .....++..||+|++...+.++..+.++||||+..........  ....+..++ ....++.++++++
T Consensus       178 liN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~~~liDtPG~~~~~~~~~~l--~~~~l~~~~-~~~~i~~~~~~l~  254 (369)
T 3ec1_A          178 FINRIIEEATGKGNVITTSYFPGTTLDMIEIPLESGATLYDTPGIINHHQMAHFV--DARDLKIIT-PKREIHPRVYQLN  254 (369)
T ss_dssp             HHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECSTTCEEEECCSCCCCSSGGGGS--CTTTHHHHS-CSSCCCCEEEEEC
T ss_pred             HHHHHHhhccCCccceeecCCCCeEEeeEEEEeCCCeEEEeCCCcCcHHHHHHHH--hHHHHHHHh-cccccCceEEEEc
Confidence            57888875    1356789999999999988888789999999996542111000  012223332 2345699999999


Q ss_pred             cCCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHH
Q 031293           77 TKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLK  126 (162)
Q Consensus        77 ~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~  126 (162)
                      +...........++.+...+.|+++++||+|.++..+.+...+.+++.++
T Consensus       255 ~~~~~~~g~l~~l~~l~~~~~~~~~v~~k~d~~~~~~~~~~~~~~~~~~g  304 (369)
T 3ec1_A          255 EGQTLFFGGLARLDYIKGGRRSFVCYMANELTVHRTKLEKADSLYANQLG  304 (369)
T ss_dssp             TTEEEEETTTEEEEEEESSSEEEEEEECTTSCEEEEEGGGHHHHHHHHBT
T ss_pred             CCceEEECCEEEEEEccCCCceEEEEecCCcccccccHHHHHHHHHHhcC
Confidence            85321111111133344456899999999999876666665566665543

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=99.02  E-value=8.3e-10  Score=74.45  Aligned_cols=99  Identities=8%  Similarity=0.008  Sum_probs=61.1

Q ss_pred             HHHHHHHHHhcCcccceeEEEeecCCCCC-ccHHHH---HHHHHH----hCCceEEEEecc-CCCCcHHHHHHHHHHHHH
Q 031293           54 WEELVKEYVSTRVSLKRVCLLIDTKWGVK-PRDHEL---ISLMER----SQTKYQVVLTKT-DTVFPIDVARRAMQIEES  124 (162)
Q Consensus        54 ~~~~~~~~~~~~~~~~~vi~vid~~~~~~-~~~~~~---~~~l~~----~~~~~ivv~nK~-Dl~~~~~~~~~~~~~~~~  124 (162)
                      +..+++.|+.+   +|++|||+|+.+.-. ....++   ..++.+    .+.|++|+.||. |+.......+..+.+.  
T Consensus       115 lRplWr~Yy~~---TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams~~EI~e~L~--  189 (227)
T 3l82_B          115 VIPQIQKVCEV---VDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELH--  189 (227)
T ss_dssp             --CCHHHHHHH---CSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCCHHHHHHHTT--
T ss_pred             HHHHHHHHhcC---CCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCCHHHHHHHcC--
Confidence            34445555543   399999999965421 222223   223322    367999999995 6754333333222221  


Q ss_pred             HHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293          125 LKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR  158 (162)
Q Consensus       125 ~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~  158 (162)
                      +... .+.+.|.+|||.+|+|+.+-++||.+.+.
T Consensus       190 L~~l-~R~W~Iq~csA~TGeGL~EGLdWL~~~l~  222 (227)
T 3l82_B          190 LNLL-NHPWLVQDTEAETLTGFLNGIEWILEEVE  222 (227)
T ss_dssp             GGGG-CSCEEEEEEETTTCTTHHHHHHHHTTTTT
T ss_pred             CcCC-CCCEEEEEeECCCCcCHHHHHHHHHHHHH
Confidence            2222 25679999999999999999999987664

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=99.02  E-value=1.8e-09  Score=75.53  Aligned_cols=85  Identities=19%  Similarity=0.158  Sum_probs=57.4

Q ss_pred             ccceeEEEeecCCC--CCccH-HHHHHHHH----HhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEee
Q 031293           67 SLKRVCLLIDTKWG--VKPRD-HELISLME----RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVS  139 (162)
Q Consensus        67 ~~~~vi~vid~~~~--~~~~~-~~~~~~l~----~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S  139 (162)
                      ++|++++|+|+..+  .+-.. ..++..+.    ..++|+++|+||+|+.+....    +..++......  ..+++++|
T Consensus       162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v----~~~~~~~~~~~--~~~~~e~S  235 (255)
T 3c5h_A          162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYI----RDAHTFALSKK--NLQVVETS  235 (255)
T ss_dssp             ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHH----HHHHHHHHTSS--SCCEEECB
T ss_pred             cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHH----HHHHHHHHhcC--CCeEEEEE
Confidence            57999999998764  22222 12333332    246899999999999755443    23333333221  25899999


Q ss_pred             cCCCCCHHHHHHHHHHhh
Q 031293          140 SKSGAGIRSLRTVLSKIA  157 (162)
Q Consensus       140 a~~~~g~~~l~~~i~~~~  157 (162)
                      |++|.|+++++.+|.+.+
T Consensus       236 Ak~g~gv~elf~~l~~~l  253 (255)
T 3c5h_A          236 ARSNVNVDLAFSTLVQLI  253 (255)
T ss_dssp             TTTTBSHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHh
Confidence            999999999999998765

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.01  E-value=1.4e-09  Score=81.09  Aligned_cols=154  Identities=17%  Similarity=0.308  Sum_probs=86.2

Q ss_pred             ChhcccCCCCce---eccCCCCcceEEEEEEeC-----CceEEEcCCCCcccccC----HH----HHHHHHHHHHHHHhc
Q 031293            1 MLNALTRQWGVV---RTSDKPGLTQTINFFKLG-----TKLCLVDLPGYGFAYAK----EE----VKDAWEELVKEYVST   64 (162)
Q Consensus         1 lin~L~~~~~~~---~~~~~~g~t~~~~~~~~~-----~~~~ivDtpG~~~~~~~----~~----~~~~~~~~~~~~~~~   64 (162)
                      |+|.|+|.. ..   .....|+.++....+...     ..++++|+||+|.....    ..    ....+..++.++...
T Consensus        58 Lln~L~G~~-l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i  136 (427)
T 2qag_B           58 LMDTLFNTK-FEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKI  136 (427)
T ss_dssp             HHHHHHTSC-C-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--C
T ss_pred             HHHHHhCcc-ccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhh
Confidence            577887772 21   122245555543333221     25899999999764211    11    122333334443211


Q ss_pred             C------cc--cc-eeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCe
Q 031293           65 R------VS--LK-RVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV  135 (162)
Q Consensus        65 ~------~~--~~-~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i  135 (162)
                      .      ..  +| ++++|+|+..++...+.+++..+. .+.|+|+|+||+|.+.+.+.....+.+++.+...+.   ++
T Consensus       137 ~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L~-~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi---~I  212 (427)
T 2qag_B          137 RRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLD-SKVNIIPIIAKADAISKSELTKFKIKITSELVSNGV---QI  212 (427)
T ss_dssp             CCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHTC-SCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBC---CC
T ss_pred             hhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHHh-hCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCC---cE
Confidence            1      11  22 578889998889888888888886 678999999999999888888777778776666553   77


Q ss_pred             EEeecCCCCCHHHHHHHHHHhhhhh
Q 031293          136 MMVSSKSGAGIRSLRTVLSKIARFA  160 (162)
Q Consensus       136 ~~~Sa~~~~g~~~l~~~i~~~~~~~  160 (162)
                      +++|.-.. ...+.-..+...++|.
T Consensus       213 ~~is~~d~-~~~~~~~~~~~~~PFa  236 (427)
T 2qag_B          213 YQFPTDDE-SVAEINGTMNAHLPFA  236 (427)
T ss_dssp             CCCC------CCSHHHHHTTC-CCB
T ss_pred             EecCCCch-hHHHHHhhhcCCCCeE
Confidence            77775332 1222333444444443

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=99.01  E-value=3.5e-10  Score=82.95  Aligned_cols=115  Identities=14%  Similarity=0.076  Sum_probs=66.7

Q ss_pred             CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCC--------CccHHHH---HHHHHH----
Q 031293           30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV--------KPRDHEL---ISLMER----   94 (162)
Q Consensus        30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~--------~~~~~~~---~~~l~~----   94 (162)
                      +.++.++||||+             +.+......-.++++++++|+|.++.-        .....+.   +..+..    
T Consensus       200 ~~~l~i~Dt~Gq-------------~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~  266 (362)
T 1zcb_A          200 NVPFKMVDVGGQ-------------RSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVF  266 (362)
T ss_dssp             TEEEEEEEECC--------------------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGG
T ss_pred             CeEEEEEeccch-------------hhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhh
Confidence            446899999999             333333333345679999999987621        1111222   222221    


Q ss_pred             hCCceEEEEeccCCCCc------------------HHHHHHHHHHHHHHHhc-C---CCCCCeEEeecCCCCCHHHHHHH
Q 031293           95 SQTKYQVVLTKTDTVFP------------------IDVARRAMQIEESLKAN-N---SLVQPVMMVSSKSGAGIRSLRTV  152 (162)
Q Consensus        95 ~~~~~ivv~nK~Dl~~~------------------~~~~~~~~~~~~~~~~~-~---~~~~~i~~~Sa~~~~g~~~l~~~  152 (162)
                      .+.|+++++||+|+..+                  ...++..+.+...+... .   .....++++||+++.|+++++.+
T Consensus       267 ~~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~  346 (362)
T 1zcb_A          267 SNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRD  346 (362)
T ss_dssp             TTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHH
T ss_pred             CCCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHH
Confidence            25899999999998521                  11223333333222221 1   23357889999999999999999


Q ss_pred             HHHhh
Q 031293          153 LSKIA  157 (162)
Q Consensus       153 i~~~~  157 (162)
                      +.+.+
T Consensus       347 v~~~i  351 (362)
T 1zcb_A          347 VKDTI  351 (362)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98755

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=98.99  E-value=1.8e-10  Score=84.53  Aligned_cols=115  Identities=22%  Similarity=0.215  Sum_probs=69.6

Q ss_pred             CCceEEEcCCCCccccc---CHHHHHHHHHHHHHHHhcCcccceeEEEeecCC-CC-CccHHHHHHHHHHhCCceEEEEe
Q 031293           30 GTKLCLVDLPGYGFAYA---KEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW-GV-KPRDHELISLMERSQTKYQVVLT  104 (162)
Q Consensus        30 ~~~~~ivDtpG~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~-~~-~~~~~~~~~~l~~~~~~~ivv~n  104 (162)
                      ...+.+|||||++....   .......+......|+..   +|++++++|+.. .. ......++..+...+.|+++|+|
T Consensus       135 ~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~---~d~iilvv~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~n  211 (360)
T 3t34_A          135 VVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEK---PNCIILAISPANQDLATSDAIKISREVDPSGDRTFGVLT  211 (360)
T ss_dssp             SCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHS---SSEEEEEEEETTSCGGGCHHHHHHHHSCTTCTTEEEEEE
T ss_pred             CCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhc---CCeEEEEeecccCCcCCHHHHHHHHHhcccCCCEEEEEe
Confidence            34699999999876522   223344455566667654   488888887643 22 22234455555556789999999


Q ss_pred             ccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHH
Q 031293          105 KTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTV  152 (162)
Q Consensus       105 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~  152 (162)
                      |+|++++....  .+.++..   ......+++++|+..+.++++.++.
T Consensus       212 K~Dl~~~~~~~--~~~~~~~---~~~~~~~~~~v~~~s~~~i~~~~~~  254 (360)
T 3t34_A          212 KIDLMDKGTDA--VEILEGR---SFKLKYPWVGVVNRSQADINKNVDM  254 (360)
T ss_dssp             CGGGCCTTCCS--HHHHTTS---SSCCSSCCEEECCCCHHHHHTTCCH
T ss_pred             CCccCCCcccH--HHHHcCc---cccccCCeEEEEECChHHhccCCCH
Confidence            99998643211  1111111   1112257889999988877765443

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=98.95  E-value=1.3e-09  Score=72.73  Aligned_cols=113  Identities=15%  Similarity=0.155  Sum_probs=58.1

Q ss_pred             ChhcccCCCCc-eeccCCCCcceEEEEEEeCCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecC-
Q 031293            1 MLNALTRQWGV-VRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTK-   78 (162)
Q Consensus         1 lin~L~~~~~~-~~~~~~~g~t~~~~~~~~~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~-   78 (162)
                      |+|+|++.... ...+..|+++.+.    .+..+.++||||+.....      .+..++...   ...+|++++|+|+. 
T Consensus        64 ll~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~l~Dt~G~~~~~~------~~~~~~~~~---~~~~~~~i~v~d~~~  130 (193)
T 2ged_A           64 LLTLLTTDSVRPTVVSQEPLSAADY----DGSGVTLVDFPGHVKLRY------KLSDYLKTR---AKFVKGLIFMVDSTV  130 (193)
T ss_dssp             HHHHHHHSSCC------------CC----CCTTCSEEEETTCCBSSC------CHHHHHHHH---GGGEEEEEEEEETTC
T ss_pred             HHHHHhcCCCCcccccCCCceeeee----cCCeEEEEECCCCchHHH------HHHHHHHhh---cccCCEEEEEEECCC
Confidence            45666665211 1123344444322    245689999999844311      112223222   23469999999987 


Q ss_pred             CCC--CccHHHHHHHHHH------hCCceEEEEeccCCCCcHHHHHHHHHHHHHHH
Q 031293           79 WGV--KPRDHELISLMER------SQTKYQVVLTKTDTVFPIDVARRAMQIEESLK  126 (162)
Q Consensus        79 ~~~--~~~~~~~~~~l~~------~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~  126 (162)
                      ..-  .....++...+..      .++|+++|+||+|+.+........+.+.+.++
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~l~  186 (193)
T 2ged_A          131 DPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQ  186 (193)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHH
T ss_pred             CchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCHHHHHHHHHHHHH
Confidence            211  1111122222221      27899999999999876656565556655444

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=98.92  E-value=7.3e-10  Score=74.15  Aligned_cols=107  Identities=11%  Similarity=0.061  Sum_probs=63.8

Q ss_pred             eEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHHHHHH---hCCceEEEEeccCC
Q 031293           33 LCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDT  108 (162)
Q Consensus        33 ~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~~l~~---~~~~~ivv~nK~Dl  108 (162)
                      +.++|+||+...          ..+...+..   .++.+++|.|.....+-.. ..++..+..   .+.|+++++||+|+
T Consensus        80 ~~i~Dt~g~~~~----------~~~~~~~~~---~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl  146 (191)
T 1oix_A           80 AQIWDTAGLERY----------RAITSAYYR---GAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDL  146 (191)
T ss_dssp             EEEEEECSCCSS----------SCCCHHHHT---TCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGG
T ss_pred             EEEEECCCCcch----------hhhhHHHhh---cCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccc
Confidence            557999997332          112233332   3478889999765321111 123333332   25789999999998


Q ss_pred             CCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293          109 VFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  157 (162)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~  157 (162)
                      .+.....  .+..+......+   ..++.+||+++.|++++++.|.+.+
T Consensus       147 ~~~~~~~--~~~a~~l~~~~~---~~~ld~Sald~~~v~~l~~~l~~~i  190 (191)
T 1oix_A          147 RHLRAVP--TDEARAFAEKNG---LSFIETSALDSTNVEAAFQTILTEI  190 (191)
T ss_dssp             GGGCCSC--HHHHHHHHHHTT---CEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             ccccccC--HHHHHHHHHHcC---CEEEEEeCCCCCCHHHHHHHHHHHh
Confidence            6322110  112233333332   4788899999999999999998754

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=98.90  E-value=1.3e-09  Score=74.45  Aligned_cols=82  Identities=16%  Similarity=0.143  Sum_probs=54.0

Q ss_pred             cceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcH--HHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCC
Q 031293           68 LKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPI--DVARRAMQIEESLKANNSLVQPVMMVSSKSGAG  145 (162)
Q Consensus        68 ~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g  145 (162)
                      .+.+++|+|+..+...    ........+.|.++|+||+|+.+..  .....    .+.+...+ ...+++++||++|.|
T Consensus       130 ~~~~i~vvd~~~~~~~----~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~----~~~~~~~~-~~~~i~~~Sa~~g~g  200 (221)
T 2wsm_A          130 ENYRVVMVSVTEGDDV----VEKHPEIFRVADLIVINKVALAEAVGADVEKM----KADAKLIN-PRAKIIEMDLKTGKG  200 (221)
T ss_dssp             CSEEEEEEEGGGCTTH----HHHCHHHHHTCSEEEEECGGGHHHHTCCHHHH----HHHHHHHC-TTSEEEECBTTTTBT
T ss_pred             cCcEEEEEeCCCcchh----hhhhhhhhhcCCEEEEecccCCcchhhHHHHH----HHHHHHhC-CCCeEEEeecCCCCC
Confidence            3678999998765321    1122233468999999999986321  12222    22232222 125899999999999


Q ss_pred             HHHHHHHHHHhhh
Q 031293          146 IRSLRTVLSKIAR  158 (162)
Q Consensus       146 ~~~l~~~i~~~~~  158 (162)
                      +++++++|.+.+.
T Consensus       201 i~~l~~~l~~~~~  213 (221)
T 2wsm_A          201 FEEWIDFLRGILN  213 (221)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999987654

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=98.87  E-value=8.5e-09  Score=74.49  Aligned_cols=115  Identities=13%  Similarity=0.120  Sum_probs=70.3

Q ss_pred             CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecC-------CCCCc-cHHHHHHHHH---H----
Q 031293           30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTK-------WGVKP-RDHELISLME---R----   94 (162)
Q Consensus        30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~-------~~~~~-~~~~~~~~l~---~----   94 (162)
                      +-++.+|||+|+             +.+......-.++++++++|+|.+       +.-.. .-.+...++.   .    
T Consensus       166 ~v~l~iwDtgGQ-------------e~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~  232 (327)
T 3ohm_A          166 SVIFRMVDVGGQ-------------RSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWF  232 (327)
T ss_dssp             TEEEEEEEECCS-------------HHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGG
T ss_pred             ceeeEEEEcCCc-------------hhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhcc
Confidence            346899999999             333333333345569999999754       21111 1122222222   1    


Q ss_pred             hCCceEEEEeccCCCCcH------------------HHHHHHHHHHHHHHhcC---CCCCCeEEeecCCCCCHHHHHHHH
Q 031293           95 SQTKYQVVLTKTDTVFPI------------------DVARRAMQIEESLKANN---SLVQPVMMVSSKSGAGIRSLRTVL  153 (162)
Q Consensus        95 ~~~~~ivv~nK~Dl~~~~------------------~~~~~~~~~~~~~~~~~---~~~~~i~~~Sa~~~~g~~~l~~~i  153 (162)
                      .++|+++++||+|+..+.                  ..++..+.+.+.+....   .+...++++||+++.|++.++..+
T Consensus       233 ~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v  312 (327)
T 3ohm_A          233 QNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAV  312 (327)
T ss_dssp             TTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHH
Confidence            258999999999986422                  23344444444433221   123467789999999999999999


Q ss_pred             HHhh
Q 031293          154 SKIA  157 (162)
Q Consensus       154 ~~~~  157 (162)
                      .+.+
T Consensus       313 ~~~I  316 (327)
T 3ohm_A          313 KDTI  316 (327)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8755

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=98.86  E-value=2.5e-09  Score=78.19  Aligned_cols=113  Identities=10%  Similarity=0.043  Sum_probs=65.9

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecC-------CCCCccH-HHHHH---HHHH----hC
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTK-------WGVKPRD-HELIS---LMER----SQ   96 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~-------~~~~~~~-~~~~~---~l~~----~~   96 (162)
                      ++.+|||+|+..          +......|   .++++++++|+|.+       +...... .+...   .+..    .+
T Consensus       184 ~l~iwDtaGQe~----------~r~~~~~y---~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~  250 (354)
T 2xtz_A          184 VYRLFDVGGQRN----------ERRKWIHL---FEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEK  250 (354)
T ss_dssp             EEEEEEECCSTT----------GGGGTGGG---CTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSS
T ss_pred             eeEEEECCCchh----------hhHHHHHH---hCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCC
Confidence            589999999921          12233333   34569999999975       1111111 22222   2221    25


Q ss_pred             CceEEEEeccCCCCcH-----------------------HHHHHHHHHHHHHHh----cC-----CCCCCeEEeecCCCC
Q 031293           97 TKYQVVLTKTDTVFPI-----------------------DVARRAMQIEESLKA----NN-----SLVQPVMMVSSKSGA  144 (162)
Q Consensus        97 ~~~ivv~nK~Dl~~~~-----------------------~~~~~~~~~~~~~~~----~~-----~~~~~i~~~Sa~~~~  144 (162)
                      +|+++|+||+|+..+.                       ..++..+.+.+.+..    +.     .+...++++||+++.
T Consensus       251 ~piiLvgNK~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~  330 (354)
T 2xtz_A          251 TSFMLFLNKFDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQK  330 (354)
T ss_dssp             CEEEEEEECHHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHH
T ss_pred             CeEEEEEECcchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecch
Confidence            8999999999984221                       122222222322211    10     122346899999999


Q ss_pred             CHHHHHHHHHHhh
Q 031293          145 GIRSLRTVLSKIA  157 (162)
Q Consensus       145 g~~~l~~~i~~~~  157 (162)
                      |+++++.++.+.+
T Consensus       331 nV~~vF~~v~~~I  343 (354)
T 2xtz_A          331 LVKKTFKLVDETL  343 (354)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHH
Confidence            9999999998754

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=98.86  E-value=5.1e-08  Score=70.88  Aligned_cols=108  Identities=19%  Similarity=0.179  Sum_probs=65.6

Q ss_pred             CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHH-HHHHHHHhCCceEEEEeccCC
Q 031293           30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHE-LISLMERSQTKYQVVLTKTDT  108 (162)
Q Consensus        30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~-~~~~l~~~~~~~ivv~nK~Dl  108 (162)
                      +.++.++||||++..          ...+      ...+|.+++++|+..+-   +.+ +...+  ...+.++++||+|+
T Consensus       147 ~~~~iliDT~Gi~~~----------~~~v------~~~~d~vl~v~d~~~~~---~~~~i~~~i--~~~~~ivvlNK~Dl  205 (337)
T 2qm8_A          147 GFDVILVETVGVGQS----------ETAV------ADLTDFFLVLMLPGAGD---ELQGIKKGI--FELADMIAVNKADD  205 (337)
T ss_dssp             TCCEEEEEECSSSSC----------HHHH------HTTSSEEEEEECSCC---------CCTTH--HHHCSEEEEECCST
T ss_pred             CCCEEEEECCCCCcc----------hhhH------HhhCCEEEEEEcCCCcc---cHHHHHHHH--hccccEEEEEchhc
Confidence            557999999999653          1111      13569999999975331   111 00001  12467888899997


Q ss_pred             CCcH-HHHHHHHHHHHHHHhcCC----CCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293          109 VFPI-DVARRAMQIEESLKANNS----LVQPVMMVSSKSGAGIRSLRTVLSKIAR  158 (162)
Q Consensus       109 ~~~~-~~~~~~~~~~~~~~~~~~----~~~~i~~~Sa~~~~g~~~l~~~i~~~~~  158 (162)
                      .... ......+.+...+.....    ...+++++||+++.|+++|++.|.+..+
T Consensus       206 ~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~  260 (337)
T 2qm8_A          206 GDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS  260 (337)
T ss_dssp             TCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             cCchhHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            6433 233333344333322211    1258999999999999999999988654

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=98.84  E-value=1.5e-09  Score=79.43  Aligned_cols=71  Identities=20%  Similarity=0.226  Sum_probs=40.5

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEE--EEeC------------------CceEEEcCCCCcccccCHHHHHHHHHHHHH
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINF--FKLG------------------TKLCLVDLPGYGFAYAKEEVKDAWEELVKE   60 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~--~~~~------------------~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~   60 (162)
                      |+|+|++. . +.++++|++|.+.+.  ...+                  ..+.++||||+....   +   ..+.+...
T Consensus        18 L~n~Lt~~-~-~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a---~---~~~gl~~~   89 (363)
T 1jal_A           18 LFNALTKA-G-IEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGA---S---KGEGLGNK   89 (363)
T ss_dssp             HHHHHHHT-C-------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTH---H---HHGGGTCC
T ss_pred             HHHHHHCC-C-CcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccc---c---ccchHHHH
Confidence            58999988 3 678899998876543  2222                  359999999984321   0   00111122


Q ss_pred             HHhcCcccceeEEEeecCC
Q 031293           61 YVSTRVSLKRVCLLIDTKW   79 (162)
Q Consensus        61 ~~~~~~~~~~vi~vid~~~   79 (162)
                      ++...+.+|++++|+|+.+
T Consensus        90 fl~~ir~ad~il~VvD~~~  108 (363)
T 1jal_A           90 FLANIRETDAIGHVVRCFE  108 (363)
T ss_dssp             HHHHHHTCSEEEEEEECSC
T ss_pred             HHHHHHhcCeEEEEEecCC
Confidence            3333456799999999875

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=98.81  E-value=9.3e-09  Score=74.61  Aligned_cols=115  Identities=12%  Similarity=0.082  Sum_probs=70.6

Q ss_pred             CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCC-------CCC-ccHHHHHHH---H-HH---
Q 031293           30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW-------GVK-PRDHELISL---M-ER---   94 (162)
Q Consensus        30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~-------~~~-~~~~~~~~~---l-~~---   94 (162)
                      +-++.+|||+|+          +.+......|   .++++++++|+|.++       ... ..-.+...+   + ..   
T Consensus       160 ~v~l~iwDtaGQ----------e~~R~~w~~y---y~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~  226 (340)
T 4fid_A          160 DIPFHLIDVGGQ----------RSERKXWVSF---FSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFL  226 (340)
T ss_dssp             SCEEEEEECCSC----------HHHHHHHHTT---SCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGG
T ss_pred             eeeeccccCCCc----------ccccccHHHH---hccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhcc
Confidence            456999999999          2233333444   456799999999862       111 111222222   2 21   


Q ss_pred             hCCceEEEEeccCCCCcHH-----------------HHHHHHHHHHHH------HhcC--------------CCCCCeEE
Q 031293           95 SQTKYQVVLTKTDTVFPID-----------------VARRAMQIEESL------KANN--------------SLVQPVMM  137 (162)
Q Consensus        95 ~~~~~ivv~nK~Dl~~~~~-----------------~~~~~~~~~~~~------~~~~--------------~~~~~i~~  137 (162)
                      .++|+++++||+|+..+..                 .++..+.+.+.+      ....              .+...+++
T Consensus       227 ~~~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~  306 (340)
T 4fid_A          227 KGAVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNP  306 (340)
T ss_dssp             TTSEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEE
T ss_pred             CCCeEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEE
Confidence            2589999999999863221                 334444555544      1110              02246788


Q ss_pred             eecCCCCCHHHHHHHHHHhh
Q 031293          138 VSSKSGAGIRSLRTVLSKIA  157 (162)
Q Consensus       138 ~Sa~~~~g~~~l~~~i~~~~  157 (162)
                      +||++..+++.++..+.+.+
T Consensus       307 TsA~dt~nv~~vF~~v~~~I  326 (340)
T 4fid_A          307 TNATDGSNIKRVFMLAVDVI  326 (340)
T ss_dssp             ECTTCHHHHHHHHHHHHHHH
T ss_pred             EEeeCcHHHHHHHHHHHHHH
Confidence            99999999999999887654

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=98.81  E-value=7.4e-09  Score=76.72  Aligned_cols=115  Identities=12%  Similarity=0.073  Sum_probs=67.0

Q ss_pred             CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCC-------CC-CccHHHHH---HHHHH----
Q 031293           30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW-------GV-KPRDHELI---SLMER----   94 (162)
Q Consensus        30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~-------~~-~~~~~~~~---~~l~~----   94 (162)
                      +.++.+|||+|+..          +......|+   ++++++++|+|.++       .. ...-.+..   ..+..    
T Consensus       216 ~v~l~iwDtaGQe~----------~r~~w~~yf---~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~  282 (402)
T 1azs_C          216 KVNFHMFDVGGQRD----------ERRKWIQCF---NDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWL  282 (402)
T ss_dssp             TEEEEEEEECCSGG----------GGGGGGGGT---TTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTC
T ss_pred             Cccceecccchhhh----------hhhhhHhhc---cCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccC
Confidence            34689999999921          123333443   45699999999875       11 11112222   22222    


Q ss_pred             hCCceEEEEeccCCCCcHH--------------------------------HHHHHHHHHHH-HHhc-----CCCCCCeE
Q 031293           95 SQTKYQVVLTKTDTVFPID--------------------------------VARRAMQIEES-LKAN-----NSLVQPVM  136 (162)
Q Consensus        95 ~~~~~ivv~nK~Dl~~~~~--------------------------------~~~~~~~~~~~-~~~~-----~~~~~~i~  136 (162)
                      .++|+++|+||+|+..+..                                .+.....+... ...+     +.....++
T Consensus       283 ~~~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~  362 (402)
T 1azs_C          283 RTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPH  362 (402)
T ss_dssp             SSCCEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEE
T ss_pred             CCCeEEEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEE
Confidence            2578999999999853221                                11222222221 1211     11224567


Q ss_pred             EeecCCCCCHHHHHHHHHHhh
Q 031293          137 MVSSKSGAGIRSLRTVLSKIA  157 (162)
Q Consensus       137 ~~Sa~~~~g~~~l~~~i~~~~  157 (162)
                      ++||+++.|+++++.++.+.+
T Consensus       363 ~TSA~d~~nV~~vF~~v~~~I  383 (402)
T 1azs_C          363 FTCAVDTENIRRVFNDCRDII  383 (402)
T ss_dssp             ECCTTCHHHHHHHHHHHHHHH
T ss_pred             EEEeecCcCHHHHHHHHHHHH
Confidence            899999999999999987754

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=98.80  E-value=1.5e-08  Score=71.57  Aligned_cols=97  Identities=8%  Similarity=0.021  Sum_probs=60.6

Q ss_pred             HHHHHHHhcCcccceeEEEeecCCCCC-ccHHHH---HHHHHH----hCCceEEEEec-cCCCCcHHHHHHHHHHHHHHH
Q 031293           56 ELVKEYVSTRVSLKRVCLLIDTKWGVK-PRDHEL---ISLMER----SQTKYQVVLTK-TDTVFPIDVARRAMQIEESLK  126 (162)
Q Consensus        56 ~~~~~~~~~~~~~~~vi~vid~~~~~~-~~~~~~---~~~l~~----~~~~~ivv~nK-~Dl~~~~~~~~~~~~~~~~~~  126 (162)
                      .+.+.|..+   +|++|||+||.+... ....++   ..++.+    .+.|++|+.|| .|+.......+..+.+.  +.
T Consensus       202 plWr~Yy~~---tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e~L~--L~  276 (312)
T 3l2o_B          202 PQIQKVCEV---VDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELH--LN  276 (312)
T ss_dssp             HHHHHHHHH---CSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHHHTT--GG
T ss_pred             HHHHHHhcC---CCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHHHcC--Cc
Confidence            344455433   399999999965321 112222   233321    47899999997 57764333333222221  22


Q ss_pred             hcCCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293          127 ANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR  158 (162)
Q Consensus       127 ~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~  158 (162)
                      .. .+.+.|.++||.+|+|+.+-++||.+.+.
T Consensus       277 ~l-~r~W~Iq~csA~tGeGL~EGldWL~~~l~  307 (312)
T 3l2o_B          277 LL-NHPWLVQDTEAETLTGFLNGIEWILEEVE  307 (312)
T ss_dssp             GG-CSCEEEEEEETTTCTTHHHHHHHHHHHSC
T ss_pred             cC-CCcEEEEecccCCCcCHHHHHHHHHHHHH
Confidence            22 25679999999999999999999998764

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=98.74  E-value=4.3e-09  Score=77.29  Aligned_cols=71  Identities=21%  Similarity=0.214  Sum_probs=42.6

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEE--EE----------------------eCCceEEEcCCCCcccccCHHHHHHHHH
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINF--FK----------------------LGTKLCLVDLPGYGFAYAKEEVKDAWEE   56 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~--~~----------------------~~~~~~ivDtpG~~~~~~~~~~~~~~~~   56 (162)
                      |+|+|++.  .+.+++.|++|...+.  ..                      .+..+.++||||+.......      +.
T Consensus        17 L~n~L~~~--~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~~a~~~------~~   88 (368)
T 2dby_A           17 LFNALTRA--NALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVKGAHKG------EG   88 (368)
T ss_dssp             HHHHHHHH--HTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCCCCCSS------SC
T ss_pred             HHHHHhCC--CCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCcccccccc------ch
Confidence            57888877  3567788888764332  11                      23459999999985431100      00


Q ss_pred             HHHHHHhcCcccceeEEEeecCC
Q 031293           57 LVKEYVSTRVSLKRVCLLIDTKW   79 (162)
Q Consensus        57 ~~~~~~~~~~~~~~vi~vid~~~   79 (162)
                      +...++...+.+|++++|+|+..
T Consensus        89 lg~~fl~~ir~ad~ii~VvD~~~  111 (368)
T 2dby_A           89 LGNQFLAHIREVAAIAHVLRCFP  111 (368)
T ss_dssp             TTHHHHHHHHTCSEEEEEEECCC
T ss_pred             HHHHHHHHHHhCCEEEEEEECCC
Confidence            11222223345699999999875

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=98.73  E-value=1.4e-08  Score=72.75  Aligned_cols=86  Identities=14%  Similarity=0.131  Sum_probs=58.3

Q ss_pred             cCcccceeEEEeecCCCCCccHHHHHHHH---HHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeec
Q 031293           64 TRVSLKRVCLLIDTKWGVKPRDHELISLM---ERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSS  140 (162)
Q Consensus        64 ~~~~~~~vi~vid~~~~~~~~~~~~~~~l---~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa  140 (162)
                      ...++|.+++|+|++.+....+ .+-+++   ...++|.++|+||+|+.++.......+.+.+.....+   .+++++||
T Consensus        83 ~~anvD~v~~V~~~~~p~~~~~-~i~r~L~~~~~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g---~~v~~~sa  158 (307)
T 1t9h_A           83 PICNVDQAVLVFSAVQPSFSTA-LLDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIG---YDVYLTSS  158 (307)
T ss_dssp             TEECCCEEEEEEESTTTTCCHH-HHHHHHHHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHT---CCEEECCH
T ss_pred             HHHhCCEEEEEEeCCCCCCCHH-HHHHHHHHHHHCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCC---CeEEEEec
Confidence            3567899999999997665544 333333   3468999999999999976542111223333333333   38999999


Q ss_pred             CCCCCHHHHHHHH
Q 031293          141 KSGAGIRSLRTVL  153 (162)
Q Consensus       141 ~~~~g~~~l~~~i  153 (162)
                      .++.|+++|++..
T Consensus       159 ~~~~g~~~L~~~~  171 (307)
T 1t9h_A          159 KDQDSLADIIPHF  171 (307)
T ss_dssp             HHHTTCTTTGGGG
T ss_pred             CCCCCHHHHHhhc
Confidence            9999988776544

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=98.58  E-value=7.7e-07  Score=65.02  Aligned_cols=84  Identities=17%  Similarity=0.200  Sum_probs=54.7

Q ss_pred             CcccceeEEEeecCCCCCccHHHHHHHH---HHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecC
Q 031293           65 RVSLKRVCLLIDTKWGVKPRDHELISLM---ERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSK  141 (162)
Q Consensus        65 ~~~~~~vi~vid~~~~~~~~~~~~~~~l---~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~  141 (162)
                      ..++|.+++| ++..+..... .+-.+|   ...++|.++|+||+|+.++... ...+.+...+...+   .+++++||.
T Consensus       128 ~anvD~v~iv-~a~~P~~~~~-~i~r~L~~a~~~~~~~iivlNK~DL~~~~~~-~~~~~~~~~y~~~G---~~v~~~Sa~  201 (358)
T 2rcn_A          128 AANIDQIVIV-SAILPELSLN-IIDRYLVGCETLQVEPLIVLNKIDLLDDEGM-DFVNEQMDIYRNIG---YRVLMVSSH  201 (358)
T ss_dssp             EECCCEEEEE-EESTTTCCHH-HHHHHHHHHHHHTCEEEEEEECGGGCCHHHH-HHHHHHHHHHHTTT---CCEEECBTT
T ss_pred             HhcCCEEEEE-EeCCCCCCHH-HHHHHHHHHHhcCCCEEEEEECccCCCchhH-HHHHHHHHHHHhCC---CcEEEEecC
Confidence            3567988866 6665433322 232333   4468999999999999976532 11233333444333   389999999


Q ss_pred             CCCCHHHHHHHHH
Q 031293          142 SGAGIRSLRTVLS  154 (162)
Q Consensus       142 ~~~g~~~l~~~i~  154 (162)
                      ++.|+++|...+.
T Consensus       202 ~~~gl~~L~~~~~  214 (358)
T 2rcn_A          202 TQDGLKPLEEALT  214 (358)
T ss_dssp             TTBTHHHHHHHHT
T ss_pred             CCcCHHHHHHhcC
Confidence            9999999887653

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=98.41  E-value=2.7e-06  Score=63.38  Aligned_cols=118  Identities=16%  Similarity=0.186  Sum_probs=72.6

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCCCc
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP  111 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~  111 (162)
                      .++++|+||++.....      ...+++..  +....+..+. +++.. ...++..+...+...+.|+++|+||.|++-.
T Consensus       121 ~ltv~D~~g~~~~~~~------~~~~L~~~--~L~~~~~~~~-lS~G~-~~kqrv~la~aL~~~~~p~~lV~tkpdlllL  190 (413)
T 1tq4_A          121 NVVFWDLPGIGSTNFP------PDTYLEKM--KFYEYDFFII-ISATR-FKKNDIDIAKAISMMKKEFYFVRTKVDSDIT  190 (413)
T ss_dssp             TEEEEECCCGGGSSCC------HHHHHHHT--TGGGCSEEEE-EESSC-CCHHHHHHHHHHHHTTCEEEEEECCHHHHHH
T ss_pred             CeeehHhhcccchHHH------HHHHHHHc--CCCccCCeEE-eCCCC-ccHHHHHHHHHHHhcCCCeEEEEecCccccc
Confidence            5899999998653211      12223222  1222244444 66653 4567777788888788999999999997511


Q ss_pred             H---------HHHHHHHHHHHHH----HhcCCCCCCeEEeec--CCCCCHHHHHHHHHHhhhh
Q 031293          112 I---------DVARRAMQIEESL----KANNSLVQPVMMVSS--KSGAGIRSLRTVLSKIARF  159 (162)
Q Consensus       112 ~---------~~~~~~~~~~~~~----~~~~~~~~~i~~~Sa--~~~~g~~~l~~~i~~~~~~  159 (162)
                      +         ...+..+.+++..    ...+.....++++|+  ..+.|++++.+.+.+.++.
T Consensus       191 DEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpe  253 (413)
T 1tq4_A          191 NEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPI  253 (413)
T ss_dssp             HHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCG
T ss_pred             CcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCcc
Confidence            1         1223333444332    222222347899999  6777899999999877653

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=98.41  E-value=5.9e-07  Score=61.27  Aligned_cols=62  Identities=19%  Similarity=0.201  Sum_probs=41.7

Q ss_pred             hCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhhh
Q 031293           95 SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARF  159 (162)
Q Consensus        95 ~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~~  159 (162)
                      .+.|.++|+||+|+.+....  ..+.+.+.+...+ ...+++++||++|.|++++++++.+.+..
T Consensus       163 ~~~~~iiv~NK~Dl~~~~~~--~~~~~~~~~~~~~-~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~  224 (226)
T 2hf9_A          163 MKTADLIVINKIDLADAVGA--DIKKMENDAKRIN-PDAEVVLLSLKTMEGFDKVLEFIEKSVKE  224 (226)
T ss_dssp             HTTCSEEEEECGGGHHHHTC--CHHHHHHHHHHHC-TTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             hhcCCEEEEeccccCchhHH--HHHHHHHHHHHhC-CCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence            36789999999998632110  1122233333221 12489999999999999999999887653

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=98.25  E-value=1.5e-06  Score=66.30  Aligned_cols=114  Identities=15%  Similarity=0.197  Sum_probs=65.6

Q ss_pred             CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCce-EEEEeccCC
Q 031293           30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKY-QVVLTKTDT  108 (162)
Q Consensus        30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~-ivv~nK~Dl  108 (162)
                      +..+.++||||....  ....   +.. +..... ...+|.+++|+|+..+..  .......+.+. +|+ .+|+||+|.
T Consensus       183 ~~DvvIIDTpG~~~~--~~~l---~~e-l~~~~~-~i~pd~vllVvDa~~g~~--~~~~a~~~~~~-~~i~gvVlNK~D~  252 (504)
T 2j37_W          183 NFEIIIVDTSGRHKQ--EDSL---FEE-MLQVAN-AIQPDNIVYVMDASIGQA--CEAQAKAFKDK-VDVASVIVTKLDG  252 (504)
T ss_dssp             TCCEEEEEECCCCTT--CHHH---HHH-HHHHHH-HHCCSEEEEEEETTCCTT--HHHHHHHHHHH-HCCCCEEEECTTS
T ss_pred             CCcEEEEeCCCCccc--chhH---HHH-HHHHHh-hhcCceEEEEEecccccc--HHHHHHHHHhh-cCceEEEEeCCcc
Confidence            446999999998432  1111   111 111111 125689999999987643  34444545443 675 899999998


Q ss_pred             CCcHHHHHHHHHHHHHHHh------cCC------CCCCeEEeecCCCCC-HHHHHHHHHHh
Q 031293          109 VFPIDVARRAMQIEESLKA------NNS------LVQPVMMVSSKSGAG-IRSLRTVLSKI  156 (162)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~------~~~------~~~~i~~~Sa~~~~g-~~~l~~~i~~~  156 (162)
                      ......  .+. +...++.      .+.      ...+..++|+..|.| +++|++++.+.
T Consensus       253 ~~~~g~--~l~-~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~  310 (504)
T 2j37_W          253 HAKGGG--ALS-AVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL  310 (504)
T ss_dssp             CCCCTH--HHH-HHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred             ccchHH--HHH-HHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence            744321  111 1122210      000      112455689999999 99999998765

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=98.21  E-value=1.4e-05  Score=56.31  Aligned_cols=99  Identities=21%  Similarity=0.382  Sum_probs=66.4

Q ss_pred             CceEEEcCCCCcccccCH----HHH----HHHHHHHHHHHhcC-------cccceeEEEeec-CCCCCccHHHHHHHHHH
Q 031293           31 TKLCLVDLPGYGFAYAKE----EVK----DAWEELVKEYVSTR-------VSLKRVCLLIDT-KWGVKPRDHELISLMER   94 (162)
Q Consensus        31 ~~~~ivDtpG~~~~~~~~----~~~----~~~~~~~~~~~~~~-------~~~~~vi~vid~-~~~~~~~~~~~~~~l~~   94 (162)
                      ..++++|+||+|......    ...    ..+.......+.+.       ..++++++++|. .+++...+.+++..+..
T Consensus        60 ~~ltv~d~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L~~  139 (270)
T 3sop_A           60 MKLTVIDTPGFGDQINNENCWEPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLSK  139 (270)
T ss_dssp             CEEEEECCCC--CCSBCTTCSHHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHHHT
T ss_pred             CCceEEechhhhhhcccHHHHHHHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHHHh
Confidence            368999999998752211    111    11222222222211       224677888884 57888889888888887


Q ss_pred             hCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCC
Q 031293           95 SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNS  130 (162)
Q Consensus        95 ~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~  130 (162)
                      . .++++|+||+|.+...+.....+.+++.+..++.
T Consensus       140 ~-~~vI~Vi~K~D~lt~~e~~~~k~~i~~~l~~~~i  174 (270)
T 3sop_A          140 V-VNIIPVIAKADTMTLEEKSEFKQRVRKELEVNGI  174 (270)
T ss_dssp             T-SEEEEEETTGGGSCHHHHHHHHHHHHHHHHHTTC
T ss_pred             c-CcEEEEEeccccCCHHHHHHHHHHHHHHHHHcCc
Confidence            6 8999999999999888888888888887877765

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=98.13  E-value=1.1e-06  Score=64.90  Aligned_cols=71  Identities=18%  Similarity=0.120  Sum_probs=30.6

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEe--------------------CCceEEEcCCCCcccccCHHHHHHHHHHHHH
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKL--------------------GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE   60 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~--------------------~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~   60 (162)
                      |+|+|++. . ..++++|++|.+.+....                    ...+.++||||+......   .   +.+...
T Consensus        38 L~n~Ltg~-~-~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~as~---~---~glg~~  109 (396)
T 2ohf_A           38 FFNVLTNS-Q-ASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGAHN---G---QGLGNA  109 (396)
T ss_dssp             HHHHHHC---------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-----------------CCH
T ss_pred             HHHHHHCC-C-ccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccccch---h---hHHHHH
Confidence            58999988 3 478899999976543221                    224899999998432110   0   111122


Q ss_pred             HHhcCcccceeEEEeecCC
Q 031293           61 YVSTRVSLKRVCLLIDTKW   79 (162)
Q Consensus        61 ~~~~~~~~~~vi~vid~~~   79 (162)
                      ++...+.+|++++|+|+.+
T Consensus       110 ~l~~ir~aD~Il~VvD~~~  128 (396)
T 2ohf_A          110 FLSHISACDGIFHLTRAFE  128 (396)
T ss_dssp             HHHHHHTSSSEEEEEEC--
T ss_pred             HHHHHHhcCeEEEEEecCC
Confidence            3333456799999999864

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=97.84  E-value=9.2e-05  Score=55.58  Aligned_cols=97  Identities=19%  Similarity=0.231  Sum_probs=53.9

Q ss_pred             CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCCC
Q 031293           31 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF  110 (162)
Q Consensus        31 ~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~  110 (162)
                      ..+.++||||....  ....    ...+... .....+|.+++|+|+..+  .........+.+.-.+..+|+||+|...
T Consensus       183 ~DvVIIDTaGrl~~--d~~l----m~el~~i-~~~~~pd~vlLVvDA~~g--q~a~~~a~~f~~~~~i~gVIlTKlD~~~  253 (443)
T 3dm5_A          183 VDIIIVDTAGRHKE--DKAL----IEEMKQI-SNVIHPHEVILVIDGTIG--QQAYNQALAFKEATPIGSIIVTKLDGSA  253 (443)
T ss_dssp             CSEEEEECCCCSSC--CHHH----HHHHHHH-HHHHCCSEEEEEEEGGGG--GGHHHHHHHHHHSCTTEEEEEECCSSCS
T ss_pred             CCEEEEECCCcccc--hHHH----HHHHHHH-HHhhcCceEEEEEeCCCc--hhHHHHHHHHHhhCCCeEEEEECCCCcc
Confidence            56999999996322  1111    1112221 112235899999999864  2334444555443344678999999875


Q ss_pred             cHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHH
Q 031293          111 PIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIR  147 (162)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~  147 (162)
                      +...      ..+.....+   .|+.+++.  |++++
T Consensus       254 ~gG~------~ls~~~~~g---~PI~fig~--Ge~vd  279 (443)
T 3dm5_A          254 KGGG------ALSAVAATG---APIKFIGT--GEKID  279 (443)
T ss_dssp             SHHH------HHHHHHTTC---CCEEEEEC--SSSTT
T ss_pred             cccH------HHHHHHHHC---CCEEEEEc--CCChH
Confidence            5432      111222232   48888875  55544

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=97.73  E-value=8e-06  Score=57.89  Aligned_cols=44  Identities=32%  Similarity=0.695  Sum_probs=26.5

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEeCCceEEEcCCCCcccc
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAY   45 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~ivDtpG~~~~~   45 (162)
                      |+|+|++. ..+.+++.||+|++...+..+..+.++||||+....
T Consensus       136 liN~l~~~-~~~~~~~~~g~T~~~~~~~~~~~~~l~DtpG~~~~~  179 (282)
T 1puj_A          136 LINRLAKK-NIAKTGDRPGITTSQQWVKVGKELELLDTPGILWPK  179 (282)
T ss_dssp             HHHHHHTS-CCC------------CCEEETTTEEEEECCCCCCSC
T ss_pred             HHHHHhcC-ceeecCCCCCeeeeeEEEEeCCCEEEEECcCcCCCC
Confidence            58999998 568899999999988877778889999999996553

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=97.51  E-value=0.00014  Score=54.63  Aligned_cols=72  Identities=18%  Similarity=0.221  Sum_probs=42.6

Q ss_pred             CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCC-c-eEEEEeccC
Q 031293           30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQT-K-YQVVLTKTD  107 (162)
Q Consensus        30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~-~-~ivv~nK~D  107 (162)
                      +..+.++||||....   .  ...+. .+.. +.....+|.+++|+|+..+.  ........++. .. | ..+|+||+|
T Consensus       180 ~~D~vIIDT~G~~~~---~--~~l~~-~l~~-i~~~~~~d~vllVvda~~g~--~~~~~~~~~~~-~~~~i~gvVlnK~D  249 (432)
T 2v3c_C          180 KADVLIIDTAGRHKE---E--KGLLE-EMKQ-IKEITNPDEIILVIDGTIGQ--QAGIQAKAFKE-AVGEIGSIIVTKLD  249 (432)
T ss_dssp             SCSEEEEECCCSCSS---H--HHHHH-HHHH-TTSSSCCSEEEEEEEGGGGG--GHHHHHHHHHT-TSCSCEEEEEECSS
T ss_pred             CCCEEEEcCCCCccc---c--HHHHH-HHHH-HHHHhcCcceeEEeeccccH--HHHHHHHHHhh-cccCCeEEEEeCCC
Confidence            456999999997321   0  11111 1222 23334579999999997653  22233333332 35 6 789999999


Q ss_pred             CCCc
Q 031293          108 TVFP  111 (162)
Q Consensus       108 l~~~  111 (162)
                      ....
T Consensus       250 ~~~~  253 (432)
T 2v3c_C          250 GSAK  253 (432)
T ss_dssp             SCST
T ss_pred             Cccc
Confidence            8643

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=97.45  E-value=0.00029  Score=52.77  Aligned_cols=99  Identities=20%  Similarity=0.209  Sum_probs=54.0

Q ss_pred             CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCC
Q 031293           30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV  109 (162)
Q Consensus        30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~  109 (162)
                      +..+.++||||..........    ...+....+.. ..+.+++|+|+..+  .........+.+.-.+..+|+||+|..
T Consensus       179 ~~DvvIIDTaGr~~~~~d~~l----m~el~~i~~~~-~pd~vlLVlDa~~g--q~a~~~a~~f~~~~~~~gVIlTKlD~~  251 (433)
T 3kl4_A          179 KMDIIIVDTAGRHGYGEETKL----LEEMKEMYDVL-KPDDVILVIDASIG--QKAYDLASRFHQASPIGSVIITKMDGT  251 (433)
T ss_dssp             TCSEEEEEECCCSSSCCTTHH----HHHHHHHHHHH-CCSEEEEEEEGGGG--GGGHHHHHHHHHHCSSEEEEEECGGGC
T ss_pred             CCCEEEEECCCCccccCCHHH----HHHHHHHHHhh-CCcceEEEEeCccc--hHHHHHHHHHhcccCCcEEEEeccccc
Confidence            346899999996320011111    11122222221 34899999999864  333445555554445678899999987


Q ss_pred             CcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCH
Q 031293          110 FPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGI  146 (162)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~  146 (162)
                      .....  .+...    ...+   .|+.+++.  |+++
T Consensus       252 a~~G~--als~~----~~~g---~Pi~fig~--Ge~v  277 (433)
T 3kl4_A          252 AKGGG--ALSAV----VATG---ATIKFIGT--GEKI  277 (433)
T ss_dssp             SCHHH--HHHHH----HHHT---CEEEEEEC--CSSS
T ss_pred             ccchH--HHHHH----HHHC---CCEEEEEC--CCCh
Confidence            54432  11111    1122   48888875  5554

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=97.38  E-value=0.00057  Score=48.73  Aligned_cols=100  Identities=21%  Similarity=0.249  Sum_probs=53.5

Q ss_pred             CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCc-eEEEEeccCC
Q 031293           30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDT  108 (162)
Q Consensus        30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~-~ivv~nK~Dl  108 (162)
                      +..+.++||||..... ..   +.....+... .....+|.+++|+|+..+  .......+.+.. ..| ..+|+||+|.
T Consensus       180 ~~D~ViIDTpg~~~~~-~~---~~l~~el~~i-~~~~~~d~vllVvda~~g--~~~~~~~~~~~~-~~~i~gvVlnk~D~  251 (297)
T 1j8m_F          180 KMEIIIVDTAGRHGYG-EE---AALLEEMKNI-YEAIKPDEVTLVIDASIG--QKAYDLASKFNQ-ASKIGTIIITKMDG  251 (297)
T ss_dssp             TCSEEEEECCCSCCTT-CH---HHHHHHHHHH-HHHHCCSEEEEEEEGGGG--GGHHHHHHHHHH-TCTTEEEEEECGGG
T ss_pred             CCCEEEEeCCCCcccc-cH---HHHHHHHHHH-HHHhcCCEEEEEeeCCch--HHHHHHHHHHHh-hCCCCEEEEeCCCC
Confidence            3469999999973300 00   0001111111 112246899999998753  333344444443 467 6789999998


Q ss_pred             CCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHH
Q 031293          109 VFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRS  148 (162)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~  148 (162)
                      .....  .    ..+.....+   .|+.+++  .|+++++
T Consensus       252 ~~~~g--~----~~~~~~~~~---~pi~~i~--~Ge~v~d  280 (297)
T 1j8m_F          252 TAKGG--G----ALSAVAATG---ATIKFIG--TGEKIDE  280 (297)
T ss_dssp             CTTHH--H----HHHHHHTTT---CCEEEEE--CSSSTTC
T ss_pred             CcchH--H----HHHHHHHHC---cCEEEEe--CCCChhh
Confidence            64332  1    112233333   4888876  5666554

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=97.23  E-value=5.4e-05  Score=53.05  Aligned_cols=43  Identities=26%  Similarity=0.555  Sum_probs=27.3

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEeCCceEEEcCCCCccc
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFA   44 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~ivDtpG~~~~   44 (162)
                      |+|+|++. ..+.+++.||+|+....+..+.++.++||||+...
T Consensus       115 lin~l~~~-~~~~~~~~~g~T~~~~~~~~~~~~~l~DtpG~~~~  157 (262)
T 3cnl_A          115 IINKLKGK-RASSVGAQPGITKGIQWFSLENGVKILDTPGILYK  157 (262)
T ss_dssp             HHHHHHTT-CC----------CCSCEEECTTSCEEESSCEECCC
T ss_pred             HHHHHhcc-cccccCCCCCCccceEEEEeCCCEEEEECCCcccC
Confidence            58999998 45678999999998877777778999999998654

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=97.22  E-value=0.0014  Score=51.32  Aligned_cols=81  Identities=17%  Similarity=0.232  Sum_probs=48.9

Q ss_pred             CCceEEEcCCCCccccc---CHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCC-ccHHHHHHHHHHhCCceEEEEec
Q 031293           30 GTKLCLVDLPGYGFAYA---KEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVK-PRDHELISLMERSQTKYQVVLTK  105 (162)
Q Consensus        30 ~~~~~ivDtpG~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~-~~~~~~~~~l~~~~~~~ivv~nK  105 (162)
                      ..++.++|.||++....   .......+..++..|+....  .++++++++..... .....++..+...+.+.++|+||
T Consensus       146 ~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~--~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK  223 (608)
T 3szr_A          146 VPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQE--TISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTK  223 (608)
T ss_dssp             SCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSS--CCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEEC
T ss_pred             CCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCC--CCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecc
Confidence            45699999999876421   23334455667777765433  45666666654433 23344556665567899999999


Q ss_pred             cCCCCcH
Q 031293          106 TDTVFPI  112 (162)
Q Consensus       106 ~Dl~~~~  112 (162)
                      .|+++..
T Consensus       224 ~Dlv~~g  230 (608)
T 3szr_A          224 PDLVDKG  230 (608)
T ss_dssp             GGGSSSS
T ss_pred             hhhcCcc
Confidence            9998543

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=96.72  E-value=0.0017  Score=50.61  Aligned_cols=83  Identities=12%  Similarity=0.085  Sum_probs=43.5

Q ss_pred             ChhcccCCCCceeccC-CCCcceEEEEEE------eCCceEEEcCCCCccccc-CHHHHHHHHHHHHHHHhcCcccceeE
Q 031293            1 MLNALTRQWGVVRTSD-KPGLTQTINFFK------LGTKLCLVDLPGYGFAYA-KEEVKDAWEELVKEYVSTRVSLKRVC   72 (162)
Q Consensus         1 lin~L~~~~~~~~~~~-~~g~t~~~~~~~------~~~~~~ivDtpG~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~vi   72 (162)
                      |+|+|+|......++. ..++|+.+..+.      .+..+.++||||++.... ....  ....+.-..+.      ..+
T Consensus        54 LiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~~~~~~~~--~~~~fala~ll------ss~  125 (592)
T 1f5n_A           54 LMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVEKGDNQN--DSWIFALAVLL------SST  125 (592)
T ss_dssp             HHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGGGCCCTT--HHHHHHHHHHH------CSE
T ss_pred             HHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCcccccchhH--HHHHHHHHHHh------cCe
Confidence            6899999842112222 224445444331      245699999999976432 1111  11111111111      126


Q ss_pred             EEeecCCCCCccHHHHHHH
Q 031293           73 LLIDTKWGVKPRDHELISL   91 (162)
Q Consensus        73 ~vid~~~~~~~~~~~~~~~   91 (162)
                      +|+|+..+++..+..++..
T Consensus       126 lv~n~~~~i~~~dl~~l~~  144 (592)
T 1f5n_A          126 FVYNSIGTINQQAMDQLYY  144 (592)
T ss_dssp             EEEEEESCSSHHHHHTTHH
T ss_pred             EEEECCCCccHHHHHHHHH
Confidence            7778877777777666544

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=96.69  E-value=0.00031  Score=51.97  Aligned_cols=72  Identities=13%  Similarity=0.114  Sum_probs=44.8

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEE--EEeC------------------CceEEEcCCCCcccccCHHHHHHHHHHHHH
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINF--FKLG------------------TKLCLVDLPGYGFAYAKEEVKDAWEELVKE   60 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~--~~~~------------------~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~   60 (162)
                      |||+|++. ..+.++++|++|.+.+.  ..+.                  ..+.++|+||+.......      +.+...
T Consensus        36 L~n~Ltg~-~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~~s~~------e~L~~~  108 (392)
T 1ni3_A           36 FFRAITKS-VLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGASTG------VGLGNA  108 (392)
T ss_dssp             HHHHHHHS-TTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCCCCSS------SSSCHH
T ss_pred             HHHHHHCC-CcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccCCcHH------HHHHHH
Confidence            58999998 45589999999886543  2222                  247999999974331110      001112


Q ss_pred             HHhcCcccceeEEEeecCC
Q 031293           61 YVSTRVSLKRVCLLIDTKW   79 (162)
Q Consensus        61 ~~~~~~~~~~vi~vid~~~   79 (162)
                      ++...+.+|.+++|+|+.+
T Consensus       109 fl~~ir~~d~il~Vvd~~~  127 (392)
T 1ni3_A          109 FLSHVRAVDAIYQVVRAFD  127 (392)
T ss_dssp             HHHHHTTCSEEEEEEECCC
T ss_pred             HHHHHHHHHHHHHHHhccc
Confidence            2223345699999999864

>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*

Probab=95.43  E-value=0.02  Score=39.68  Aligned_cols=41  Identities=12%  Similarity=-0.006  Sum_probs=27.2

Q ss_pred             cceeEEEeecCCCCCccHHHHHHHHHHhCCceE-EEEeccCC
Q 031293           68 LKRVCLLIDTKWGVKPRDHELISLMERSQTKYQ-VVLTKTDT  108 (162)
Q Consensus        68 ~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~i-vv~nK~Dl  108 (162)
                      +|.+++++.+...-.......++.++..+.+++ +|+|+.|.
T Consensus       153 aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~  194 (262)
T 2ph1_A          153 PTGVVVVSTPQELTAVIVEKAINMAEETNTSVLGLVENMSYF  194 (262)
T ss_dssp             CSEEEEEECSSSCCHHHHHHHHHHHHTTTCCEEEEEETTCCE
T ss_pred             CCeEEEEecCccchHHHHHHHHHHHHhCCCCEEEEEECCCcc
Confidence            588888887764322222344566666677876 99999874

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=95.42  E-value=0.032  Score=36.89  Aligned_cols=63  Identities=10%  Similarity=0.008  Sum_probs=40.5

Q ss_pred             CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHh-----CCceEEEEec
Q 031293           31 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERS-----QTKYQVVLTK  105 (162)
Q Consensus        31 ~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~-----~~~~ivv~nK  105 (162)
                      ..+.++|+|+.-            .......+.   .+|.+++++.+...- ......++.+...     +.++.+|+|+
T Consensus        76 yD~viiD~~~~~------------~~~~~~~l~---~ad~viiv~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~vv~N~  139 (206)
T 4dzz_A           76 YDFAIVDGAGSL------------SVITSAAVM---VSDLVIIPVTPSPLD-FSAAGSVVTVLEAQAYSRKVEARFLITR  139 (206)
T ss_dssp             SSEEEEECCSSS------------SHHHHHHHH---HCSEEEEEECSCTTT-HHHHHHHHHHHTTSCGGGCCEEEEEECS
T ss_pred             CCEEEEECCCCC------------CHHHHHHHH---HCCEEEEEecCCHHH-HHHHHHHHHHHHHHHhCCCCcEEEEEec
Confidence            468999999752            111222222   248999998887544 4444556666543     3577999999


Q ss_pred             cCCC
Q 031293          106 TDTV  109 (162)
Q Consensus       106 ~Dl~  109 (162)
                      .|.-
T Consensus       140 ~~~~  143 (206)
T 4dzz_A          140 KIEM  143 (206)
T ss_dssp             BCTT
T ss_pred             cCCC
Confidence            9853

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=95.17  E-value=0.067  Score=40.12  Aligned_cols=71  Identities=20%  Similarity=0.146  Sum_probs=38.6

Q ss_pred             CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCc-eEEEEeccCC
Q 031293           30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDT  108 (162)
Q Consensus        30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~-~ivv~nK~Dl  108 (162)
                      +..+.++||||.....  ..   . ...+... .....++.+++|+|+..+.  ........+.. ..+ .-+|+||+|.
T Consensus       183 ~~D~VIIDTpG~l~~~--~~---l-~~~L~~~-~~~~~p~~vllVvda~~g~--~~~~~~~~f~~-~l~i~gvVlnK~D~  252 (433)
T 2xxa_A          183 FYDVLLVDTAGRLHVD--EA---M-MDEIKQV-HASINPVETLFVVDAMTGQ--DAANTAKAFNE-ALPLTGVVLTKVDG  252 (433)
T ss_dssp             TCSEEEEECCCCCTTC--HH---H-HHHHHHH-HHHSCCSEEEEEEETTBCT--THHHHHHHHHH-HSCCCCEEEECTTS
T ss_pred             CCCEEEEECCCccccc--HH---H-HHHHHHH-HHhhcCcceeEEeecchhH--HHHHHHHHHhc-cCCCeEEEEecCCC
Confidence            4469999999862210  00   0 1111111 1122458899999997652  23333333332 345 3578999997


Q ss_pred             CC
Q 031293          109 VF  110 (162)
Q Consensus       109 ~~  110 (162)
                      ..
T Consensus       253 ~~  254 (433)
T 2xxa_A          253 DA  254 (433)
T ss_dssp             SS
T ss_pred             Cc
Confidence            53

>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*

Probab=94.74  E-value=0.13  Score=35.95  Aligned_cols=64  Identities=17%  Similarity=0.240  Sum_probs=38.1

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCceE-EEEeccCCC
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQ-VVLTKTDTV  109 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~i-vv~nK~Dl~  109 (162)
                      .+.++|||+....  .+      ...+..      .+|.+++|+.+...-........+.+...+.+++ +|+|+.|.-
T Consensus       193 D~VIIDtpp~~~~--~d------~~~l~~------~aD~vilVv~~~~~~~~~~~~~~~~l~~~~~~~~GvVlN~~~~~  257 (271)
T 3bfv_A          193 NFVIIDTPPVNTV--TD------AQLFSK------FTGNVVYVVNSENNNKDEVKKGKELIEATGAKLLGVVLNRMPKD  257 (271)
T ss_dssp             SEEEEECCCTTTC--SH------HHHHHH------HHCEEEEEEETTSCCHHHHHHHHHHHHTTTCEEEEEEEEEECC-
T ss_pred             CEEEEeCCCCchH--HH------HHHHHH------HCCEEEEEEeCCCCcHHHHHHHHHHHHhCCCCEEEEEEeCCcCC
Confidence            5899999875221  00      111111      2488999988865433333445566666677765 889999853

>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}

Probab=94.42  E-value=0.078  Score=37.66  Aligned_cols=43  Identities=9%  Similarity=0.012  Sum_probs=26.4

Q ss_pred             ccceeEEEeecCCCCCccHHHHHHHHHHhCCce-EEEEeccCCC
Q 031293           67 SLKRVCLLIDTKWGVKPRDHELISLMERSQTKY-QVVLTKTDTV  109 (162)
Q Consensus        67 ~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~-ivv~nK~Dl~  109 (162)
                      .+|.+++|+.+...-.......++.+...+.++ -+|+|+.|.-
T Consensus       236 ~ad~vilV~~~~~~~~~~~~~~~~~l~~~~~~~~GvVlN~~~~~  279 (299)
T 3cio_A          236 SVGTSLLVARFGLNTAKEVSLSMQRLEQAGVNIKGAILNGVIKR  279 (299)
T ss_dssp             GCSEEEEEEETTTSCTTHHHHHHHHHHHTTCCCCCEEEEECCCC
T ss_pred             HCCEEEEEEcCCCChHHHHHHHHHHHHhCCCCeEEEEEeCCccC
Confidence            357778777766544344445556666666654 4777888753

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=94.29  E-value=0.2  Score=37.51  Aligned_cols=71  Identities=23%  Similarity=0.218  Sum_probs=37.5

Q ss_pred             CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCc-eEEEEeccCC
Q 031293           30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDT  108 (162)
Q Consensus        30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~-~ivv~nK~Dl  108 (162)
                      +..+.++||||....  ...   .... +... .....++.+++|+|+..+  .........+.. ..+ .-+|+||.|.
T Consensus       180 ~~DvVIIDTaG~l~~--d~~---l~~e-l~~i-~~~~~pd~vlLVvDa~tg--q~av~~a~~f~~-~l~i~GVIlTKlD~  249 (425)
T 2ffh_A          180 ARDLILVDTAGRLQI--DEP---LMGE-LARL-KEVLGPDEVLLVLDAMTG--QEALSVARAFDE-KVGVTGLVLTKLDG  249 (425)
T ss_dssp             TCSEEEEECCCCSSC--CHH---HHHH-HHHH-HHHHCCSEEEEEEEGGGT--THHHHHHHHHHH-HTCCCEEEEESGGG
T ss_pred             CCCEEEEcCCCcccc--cHH---HHHH-HHHh-hhccCCceEEEEEeccch--HHHHHHHHHHHh-cCCceEEEEeCcCC
Confidence            345899999986321  110   1111 1111 111245888999998754  222333333332 244 5678899997


Q ss_pred             CC
Q 031293          109 VF  110 (162)
Q Consensus       109 ~~  110 (162)
                      ..
T Consensus       250 ~~  251 (425)
T 2ffh_A          250 DA  251 (425)
T ss_dssp             CS
T ss_pred             cc
Confidence            53

>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*

Probab=94.12  E-value=1.1  Score=32.34  Aligned_cols=88  Identities=8%  Similarity=0.004  Sum_probs=49.0

Q ss_pred             ceeEEEeecCCCCCccHHHHHHHHHHhCCce-EEEEeccCCCCc--HHH----HHHHHHHHHHHHhcCCCCCCeEEeecC
Q 031293           69 KRVCLLIDTKWGVKPRDHELISLMERSQTKY-QVVLTKTDTVFP--IDV----ARRAMQIEESLKANNSLVQPVMMVSSK  141 (162)
Q Consensus        69 ~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~-ivv~nK~Dl~~~--~~~----~~~~~~~~~~~~~~~~~~~~i~~~Sa~  141 (162)
                      +.+++|..+............+.++..++|+ -+|+|+......  ...    ......+++.....+....-.++....
T Consensus       238 ~~~vlV~~p~~~~~~e~~r~~~~l~~~~i~v~gvV~N~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~l~~iPl~~~  317 (349)
T 3ug7_A          238 TAFRLVVIPEEMSILESERAMKALQKYGIPIDAVIVNQLIPEDVQCDFCRARRELQLKRLEMIKEKFGDKVIAYVPLLRT  317 (349)
T ss_dssp             EEEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEEEEECCSCCCSHHHHHHHHHHHHHHHHHHHHSTTSEEEEEECCSS
T ss_pred             ceEEEEECCCccHHHHHHHHHHHHHHCCCCeeEEEEcCCccccCCCchHHHHHHHHHHHHHHHHHHcCCCcEEEecCCCC
Confidence            6677777665432233445667788889995 788999976421  111    111223333333343322334555666


Q ss_pred             CCCCHHHHHHHHHHh
Q 031293          142 SGAGIRSLRTVLSKI  156 (162)
Q Consensus       142 ~~~g~~~l~~~i~~~  156 (162)
                      .-.|++.|......+
T Consensus       318 e~~g~~~L~~~~~~l  332 (349)
T 3ug7_A          318 EAKGIETLKQIAKIL  332 (349)
T ss_dssp             CSCSHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHH
Confidence            678887776655443

>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*

Probab=94.12  E-value=0.3  Score=33.53  Aligned_cols=80  Identities=14%  Similarity=0.147  Sum_probs=41.6

Q ss_pred             CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHH------hCCce-EEEE
Q 031293           31 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMER------SQTKY-QVVL  103 (162)
Q Consensus        31 ~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~------~~~~~-ivv~  103 (162)
                      ..+.++|||+.-            .......+   ..+|.+++++.+...-......+++.+..      .+.++ -+|+
T Consensus       112 yD~iiiD~pp~~------------~~~~~~~l---~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~  176 (257)
T 1wcv_1          112 YDLVLLDAPPSL------------SPLTLNAL---AAAEGVVVPVQAEYYALEGVAGLLATLEEVRAGLNPRLRLLGILV  176 (257)
T ss_dssp             CSEEEEECCSSC------------CHHHHHHH---HHCSEEEEEEESSTHHHHHHHHHHHHHHHHHHHTCTTCEEEEEEE
T ss_pred             CCEEEEeCCCCC------------CHHHHHHH---HHCCeEEEEecCchHHHHHHHHHHHHHHHHHHHhCCCceEEEEEE
Confidence            458999998641            11122222   23599999988764211111223333332      14566 4899


Q ss_pred             eccCCCCcHHHHHHHHHHHHHHH
Q 031293          104 TKTDTVFPIDVARRAMQIEESLK  126 (162)
Q Consensus       104 nK~Dl~~~~~~~~~~~~~~~~~~  126 (162)
                      |+.|.-.. ...+..+.+++.++
T Consensus       177 N~~~~~~~-~~~~~~~~l~~~~~  198 (257)
T 1wcv_1          177 TMYDGRTL-LAQQVEAQLRAHFG  198 (257)
T ss_dssp             ESBCTTCS-HHHHHHHHHHHHHG
T ss_pred             EeECCCcH-HHHHHHHHHHHHcc
Confidence            99986432 22333344554443

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=94.04  E-value=0.44  Score=33.96  Aligned_cols=78  Identities=17%  Similarity=0.210  Sum_probs=38.1

Q ss_pred             CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhc--CcccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccC
Q 031293           30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVST--RVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTD  107 (162)
Q Consensus        30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~D  107 (162)
                      +..+.++||||....  .....+.... +...+..  ...++.+++++|+..+  .........+.+.-...-+|+||.|
T Consensus       186 ~~dvvIiDtpg~~~~--~~~l~~eL~~-l~~~i~~~i~~~p~~vllVlda~t~--~~~l~~a~~~~~~~~i~gvVlTk~D  260 (306)
T 1vma_A          186 NKDVVIIDTAGRLHT--KKNLMEELRK-VHRVVKKKIPDAPHETLLVIDATTG--QNGLVQAKIFKEAVNVTGIILTKLD  260 (306)
T ss_dssp             TCSEEEEEECCCCSC--HHHHHHHHHH-HHHHGGGTCTTCCSEEEEEEEGGGH--HHHHHHHHHHHHHSCCCEEEEECGG
T ss_pred             CCCEEEEECCCchhh--HHHHHHHHHH-HHHHHhhccCCCCcEEEEEEECCCC--HHHHHHHHHHHhcCCCCEEEEeCCC
Confidence            446999999985211  1111111111 2222211  1235788999998632  1222223333322222467789999


Q ss_pred             CCCcH
Q 031293          108 TVFPI  112 (162)
Q Consensus       108 l~~~~  112 (162)
                      .....
T Consensus       261 ~~~~g  265 (306)
T 1vma_A          261 GTAKG  265 (306)
T ss_dssp             GCSCT
T ss_pred             Cccch
Confidence            76433

>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}

Probab=93.98  E-value=0.11  Score=34.79  Aligned_cols=67  Identities=7%  Similarity=0.007  Sum_probs=39.6

Q ss_pred             CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHh-CCceEEEEeccCC
Q 031293           30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERS-QTKYQVVLTKTDT  108 (162)
Q Consensus        30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~-~~~~ivv~nK~Dl  108 (162)
                      ...+.++|||+...           .......+.   .+|.+++++.+...-.......++.+... +.++.+|+|+.|.
T Consensus        67 ~yD~viiD~p~~~~-----------~~~~~~~l~---~aD~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~  132 (209)
T 3cwq_A           67 KYQNIVIDTQARPE-----------DEDLEALAD---GCDLLVIPSTPDALALDALMLTIETLQKLGNNRFRILLTIIPP  132 (209)
T ss_dssp             GCSEEEEEEECCCS-----------SSHHHHHHH---TSSEEEEEECSSHHHHHHHHHHHHHHHHTCSSSEEEEECSBCC
T ss_pred             cCCEEEEeCCCCcC-----------cHHHHHHHH---HCCEEEEEecCCchhHHHHHHHHHHHHhccCCCEEEEEEecCC
Confidence            34589999986411           111222222   35899988877642212223345556553 5778899999996


Q ss_pred             CC
Q 031293          109 VF  110 (162)
Q Consensus       109 ~~  110 (162)
                      -.
T Consensus       133 ~~  134 (209)
T 3cwq_A          133 YP  134 (209)
T ss_dssp             TT
T ss_pred             cc
Confidence            53

>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}

Probab=93.93  E-value=0.56  Score=32.87  Aligned_cols=64  Identities=13%  Similarity=0.034  Sum_probs=37.1

Q ss_pred             CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHH------hCCc-eEEEE
Q 031293           31 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMER------SQTK-YQVVL  103 (162)
Q Consensus        31 ~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~------~~~~-~ivv~  103 (162)
                      ..+.++|||+..            .......+.   .+|.+++++.+...-.......++.+..      .+.+ .-+|+
T Consensus       155 yD~IiiD~pp~~------------~~~~~~~l~---~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~  219 (298)
T 2oze_A          155 YDLIIIDTVPTP------------SVYTNNAIV---ASDYVMIPLQAEEESTNNIQNYISYLIDLQEQFNPGLDMIGFVP  219 (298)
T ss_dssp             CSEEEEEECSSC------------SHHHHHHHH---HCSEEEEEECGGGCCHHHHHHHHHHHHHHHHHHCTTCEEEEEEE
T ss_pred             CCEEEEECCCCc------------cHHHHHHHH---HCCeEEEEecCcHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEE
Confidence            458999998651            111222332   2599999988764322222233444433      2566 45899


Q ss_pred             eccCCC
Q 031293          104 TKTDTV  109 (162)
Q Consensus       104 nK~Dl~  109 (162)
                      |+.|.-
T Consensus       220 n~~~~~  225 (298)
T 2oze_A          220 YLVDTD  225 (298)
T ss_dssp             EESCTT
T ss_pred             EEECCC
Confidence            999964

>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}

Probab=93.48  E-value=0.1  Score=36.85  Aligned_cols=64  Identities=13%  Similarity=0.050  Sum_probs=38.5

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCc-eEEEEeccCCC
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDTV  109 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~-~ivv~nK~Dl~  109 (162)
                      .+.++|||.....          .    ....-...+|.+++|+.+...-.......++.+...+.+ .-+|+|+.|.-
T Consensus       203 D~VIIDtpp~~~~----------~----da~~l~~~aD~vllVv~~~~~~~~~~~~~~~~l~~~g~~~~GvVlN~v~~~  267 (286)
T 3la6_A          203 DLVLIDTPPILAV----------T----DAAIVGRHVGTTLMVARYAVNTLKEVETSLSRFEQNGIPVKGVILNSIFRR  267 (286)
T ss_dssp             SEEEEECCCTTTC----------T----HHHHHTTTCSEEEEEEETTTSBHHHHHHHHHHHHHTTCCCCEEEEEEECCC
T ss_pred             CEEEEcCCCCcch----------H----HHHHHHHHCCeEEEEEeCCCCcHHHHHHHHHHHHhCCCCEEEEEEcCcccc
Confidence            5889999875221          0    011112345888998887653323333455667666666 57888999854

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=93.43  E-value=0.2  Score=36.12  Aligned_cols=98  Identities=16%  Similarity=0.160  Sum_probs=50.1

Q ss_pred             CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCCC
Q 031293           31 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF  110 (162)
Q Consensus        31 ~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~  110 (162)
                      ..+.++||+|.......  ..+.... +...+    ..|-.++++|+..+  ......+..+.+.--.-.+++||.|...
T Consensus       212 ~d~vliDtaG~~~~~~~--l~~eL~~-i~ral----~~de~llvLDa~t~--~~~~~~~~~~~~~~~it~iilTKlD~~a  282 (328)
T 3e70_C          212 IDVVLIDTAGRSETNRN--LMDEMKK-IARVT----KPNLVIFVGDALAG--NAIVEQARQFNEAVKIDGIILTKLDADA  282 (328)
T ss_dssp             CSEEEEEECCSCCTTTC--HHHHHHH-HHHHH----CCSEEEEEEEGGGT--THHHHHHHHHHHHSCCCEEEEECGGGCS
T ss_pred             chhhHHhhccchhHHHH--HHHHHHH-HHHHh----cCCCCEEEEecHHH--HHHHHHHHHHHHhcCCCEEEEeCcCCcc
Confidence            45789999987322111  1111111 11222    24888999998655  2333344444432223477789999753


Q ss_pred             cHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHH
Q 031293          111 PIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRS  148 (162)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~  148 (162)
                      ....  .+    +.....+   .|+.+++  +|+++++
T Consensus       283 ~~G~--~l----~~~~~~~---~pi~~i~--~Ge~v~d  309 (328)
T 3e70_C          283 RGGA--AL----SISYVID---APILFVG--VGQGYDD  309 (328)
T ss_dssp             CCHH--HH----HHHHHHT---CCEEEEE--CSSSTTC
T ss_pred             chhH--HH----HHHHHHC---CCEEEEe--CCCCccc
Confidence            3221  11    1222222   4888887  6666543

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=93.36  E-value=0.32  Score=34.90  Aligned_cols=76  Identities=18%  Similarity=0.222  Sum_probs=37.4

Q ss_pred             CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHh--cCcccceeEEEeecCCCCCccHHHHHHHHHHhCCc-eEEEEecc
Q 031293           30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS--TRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKT  106 (162)
Q Consensus        30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~-~ivv~nK~  106 (162)
                      +..+.++||||.....  ...-..... +...+.  ....+|.+++++++..+  .........+.. ..+ .-+|+||.
T Consensus       191 ~yD~VIIDTpg~l~~~--~~l~~eL~~-~~~vi~~~~p~~~d~vllVl~a~~~--~~~l~~~~~~~~-~~~i~GvVltk~  264 (320)
T 1zu4_A          191 NYDLLLIDTAGRLQNK--TNLMAELEK-MNKIIQQVEKSAPHEVLLVIDATTG--QNGVIQAEEFSK-VADVSGIILTKM  264 (320)
T ss_dssp             TCSEEEEECCCCGGGH--HHHHHHHHH-HHHHHHTTCTTCCSEEEEEEEGGGT--HHHHHHHHHHTT-TSCCCEEEEECG
T ss_pred             CCCEEEEcCCCccccc--HHHHHHHHH-HHHHHhcccCCCCceEEEEEECCCc--HHHHHHHHHHhh-cCCCcEEEEeCC
Confidence            4569999999973210  000000010 111221  11235888999998743  222222222221 233 35888999


Q ss_pred             CCCCc
Q 031293          107 DTVFP  111 (162)
Q Consensus       107 Dl~~~  111 (162)
                      |....
T Consensus       265 d~~~~  269 (320)
T 1zu4_A          265 DSTSK  269 (320)
T ss_dssp             GGCSC
T ss_pred             CCCCc
Confidence            97543

>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A

Probab=92.90  E-value=0.24  Score=34.13  Aligned_cols=63  Identities=6%  Similarity=-0.040  Sum_probs=37.9

Q ss_pred             CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHh--CCceEEEEeccCC
Q 031293           31 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERS--QTKYQVVLTKTDT  108 (162)
Q Consensus        31 ~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~--~~~~ivv~nK~Dl  108 (162)
                      ..+.++|+|+.-            .......+.   .+|.+++++.+...-......+.+.+...  +.++.+|+|+.+.
T Consensus       145 yD~viiD~pp~~------------~~~~~~~l~---~aD~vivv~~~~~~s~~~~~~~~~~l~~~~~~~~~~vv~N~~~~  209 (267)
T 3k9g_A          145 YDYIVIDTNPSL------------DVTLKNALL---CSDYVIIPMTAEKWAVESLDLFNFFVRKLNLFLPIFLIITRFKK  209 (267)
T ss_dssp             CSEEEEEECSSC------------SHHHHHHHT---TCSEEEEEEESCTTHHHHHHHHHHHHHTTTCCCCEEEEEEEECT
T ss_pred             CCEEEEECcCCc------------cHHHHHHHH---HCCeEEEEeCCChHHHHHHHHHHHHHHHHhccCCEEEEEecccC
Confidence            458999998641            222333333   35999999888643212222344555555  3577899999953

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=92.75  E-value=0.55  Score=35.88  Aligned_cols=75  Identities=16%  Similarity=0.151  Sum_probs=37.7

Q ss_pred             CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcC--cccceeEEEeecCCCCCccHHHHHHHHHH-hCCceEEEEecc
Q 031293           30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTR--VSLKRVCLLIDTKWGVKPRDHELISLMER-SQTKYQVVLTKT  106 (162)
Q Consensus        30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~vi~vid~~~~~~~~~~~~~~~l~~-~~~~~ivv~nK~  106 (162)
                      +..+.++||+|......  ..-....+ +....+..  ...+-+++++|+..+  ......++.++. .++ -.+++||.
T Consensus       375 ~~DvVLIDTaGrl~~~~--~lm~EL~k-iv~iar~l~~~~P~evLLvLDattG--q~al~~ak~f~~~~~i-tgvIlTKL  448 (503)
T 2yhs_A          375 NIDVLIADTAGRLQNKS--HLMEELKK-IVRVMKKLDVEAPHEVMLTIDASTG--QNAVSQAKLFHEAVGL-TGITLTKL  448 (503)
T ss_dssp             TCSEEEECCCCSCCCHH--HHHHHHHH-HHHHHHTTCTTCSSEEEEEEEGGGT--HHHHHHHHHHHHHTCC-SEEEEECG
T ss_pred             CCCEEEEeCCCccchhh--hHHHHHHH-HHHHHHHhccCCCCeeEEEecCccc--HHHHHHHHHHHhhcCC-CEEEEEcC
Confidence            34588999999733210  00011111 11222211  124678889998765  222333444433 233 35678999


Q ss_pred             CCCC
Q 031293          107 DTVF  110 (162)
Q Consensus       107 Dl~~  110 (162)
                      |-..
T Consensus       449 D~ta  452 (503)
T 2yhs_A          449 DGTA  452 (503)
T ss_dssp             GGCS
T ss_pred             CCcc
Confidence            9753

>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10

Probab=92.45  E-value=0.18  Score=34.67  Aligned_cols=65  Identities=20%  Similarity=0.221  Sum_probs=37.1

Q ss_pred             CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCc-eEEEEeccCC
Q 031293           30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDT  108 (162)
Q Consensus        30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~-~ivv~nK~Dl  108 (162)
                      ...+.++|+|+.-            .......+   ..+|.+++++.+...-.......++.+...+.+ .-+|+|+.|.
T Consensus       110 ~yD~viiD~~~~~------------~~~~~~~~---~~ad~vi~v~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~  174 (263)
T 1hyq_A          110 STDILLLDAPAGL------------ERSAVIAI---AAAQELLLVVNPEISSITDGLKTKIVAERLGTKVLGVVVNRITT  174 (263)
T ss_dssp             TCSEEEEECCSSS------------SHHHHHHH---HHSSEEEEEECSSHHHHHHHHHHHHHHHHHTCEEEEEEEEEECT
T ss_pred             hCCEEEEeCCCCC------------ChHHHHHH---HHCCEEEEEeCCChhHHHHHHHHHHHHHhcCCCeeEEEEccCCc
Confidence            3468999998641            11112222   235888888876532111223344555555655 5689999986


Q ss_pred             C
Q 031293          109 V  109 (162)
Q Consensus       109 ~  109 (162)
                      .
T Consensus       175 ~  175 (263)
T 1hyq_A          175 L  175 (263)
T ss_dssp             T
T ss_pred             c
Confidence            4

>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*

Probab=92.33  E-value=0.13  Score=34.84  Aligned_cols=63  Identities=11%  Similarity=0.083  Sum_probs=36.2

Q ss_pred             CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCc-eEEEEeccC
Q 031293           30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTD  107 (162)
Q Consensus        30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~-~ivv~nK~D  107 (162)
                      ...+.++|||+.-.            ......+   ..+|.+++++.+...-......+.+.+...+.+ +.+|+||.+
T Consensus       131 ~yD~viiD~pp~~~------------~~~~~~l---~~aD~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~~v~N~~~  194 (254)
T 3kjh_A          131 KKEAVVMDMGAGIE------------HLTRGTA---KAVDMMIAVIEPNLNSIKTGLNIEKLAGDLGIKKVRYVINKVR  194 (254)
T ss_dssp             CCSEEEEEECTTCT------------TCCHHHH---TTCSEEEEEECSSHHHHHHHHHHHHHHHHHTCSCEEEEEEEEC
T ss_pred             CCCEEEEeCCCccc------------HHHHHHH---HHCCEEEEecCCCHHHHHHHHHHHHHHHHcCCccEEEEEeCCC
Confidence            34689999975411            1112222   335899999887532111122334455555654 789999998

>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*

Probab=92.08  E-value=0.18  Score=34.55  Aligned_cols=64  Identities=9%  Similarity=0.130  Sum_probs=35.7

Q ss_pred             CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhC---------CceE
Q 031293           30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQ---------TKYQ  100 (162)
Q Consensus        30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~---------~~~i  100 (162)
                      ...+.++|+|+. .           .......+   ..+|.+++++++...-.......++.+...+         .++-
T Consensus       113 ~yD~viiD~p~~-~-----------~~~~~~~l---~~ad~vi~v~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~~~~  177 (260)
T 3q9l_A          113 DFEFIVCDSPAG-I-----------ETGALMAL---YFADEAIITTNPEVSSVRDSDRILGILASKSRRAENGEEPIKEH  177 (260)
T ss_dssp             TCSEEEEECCSS-S-----------SHHHHHHH---HTCSEEEEEECSSHHHHHHHHHHHHHHTTSSHHHHTTCSCCEEE
T ss_pred             CCCEEEEcCCCC-C-----------CHHHHHHH---HhCCEEEEEecCChhHHHHHHHHHHHHHHhccccccccCCcceE
Confidence            356999999863 1           11222222   2358999998876321111222334443322         4578


Q ss_pred             EEEeccCC
Q 031293          101 VVLTKTDT  108 (162)
Q Consensus       101 vv~nK~Dl  108 (162)
                      +|+|+.|.
T Consensus       178 ~v~N~~~~  185 (260)
T 3q9l_A          178 LLLTRYNP  185 (260)
T ss_dssp             EEEEEECH
T ss_pred             EEEecCCc
Confidence            99999873

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=91.85  E-value=2.4  Score=29.88  Aligned_cols=71  Identities=21%  Similarity=0.203  Sum_probs=36.8

Q ss_pred             CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCc-eEEEEeccCC
Q 031293           30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDT  108 (162)
Q Consensus        30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~-~ivv~nK~Dl  108 (162)
                      +..+.++||||....  .....   . .+...... ..++.+++++|+..+  .......+.+.. ..+ .-+|+||.|.
T Consensus       180 ~~D~viiDtpp~~~~--d~~~~---~-~l~~~~~~-~~~~~~~lv~~~~~~--~~~~~~~~~~~~-~~~i~givlnk~d~  249 (295)
T 1ls1_A          180 ARDLILVDTAGRLQI--DEPLM---G-ELARLKEV-LGPDEVLLVLDAMTG--QEALSVARAFDE-KVGVTGLVLTKLDG  249 (295)
T ss_dssp             TCCEEEEECCCCSSC--CHHHH---H-HHHHHHHH-HCCSEEEEEEEGGGT--HHHHHHHHHHHH-HTCCCEEEEECGGG
T ss_pred             CCCEEEEeCCCCccc--cHHHH---H-HHHHHhhh-cCCCEEEEEEeCCCc--HHHHHHHHHHhh-cCCCCEEEEECCCC
Confidence            456999999976221  11111   1 11111111 135788899998643  222233333332 234 5688999997


Q ss_pred             CC
Q 031293          109 VF  110 (162)
Q Consensus       109 ~~  110 (162)
                      ..
T Consensus       250 ~~  251 (295)
T 1ls1_A          250 DA  251 (295)
T ss_dssp             CS
T ss_pred             Cc
Confidence            54

>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*

Probab=91.84  E-value=0.13  Score=34.69  Aligned_cols=64  Identities=11%  Similarity=0.087  Sum_probs=37.4

Q ss_pred             CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCc-eEEEEeccCCC
Q 031293           31 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDTV  109 (162)
Q Consensus        31 ~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~-~ivv~nK~Dl~  109 (162)
                      ..+.++|+|+.-            .......+   ..+|.+++++.+...-.......++.+...+.+ .-+|+|+.+..
T Consensus       112 yD~viiD~~~~~------------~~~~~~~~---~~ad~vi~v~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~  176 (237)
T 1g3q_A          112 FDFILIDCPAGL------------QLDAMSAM---LSGEEALLVTNPEISCLTDTMKVGIVLKKAGLAILGFVLNRYGRS  176 (237)
T ss_dssp             CSEEEEECCSSS------------SHHHHHHH---TTCSEEEEEECSCHHHHHHHHHHHHHHHHTTCEEEEEEEEEETSC
T ss_pred             CCEEEEECCCCc------------CHHHHHHH---HHCCeEEEEecCCcccHHHHHHHHHHHHhCCCceEEEEEecCCcc
Confidence            458999998641            11122222   345888888877532111223344555555555 67899999864

>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}

Probab=91.56  E-value=2.7  Score=29.94  Aligned_cols=89  Identities=8%  Similarity=0.024  Sum_probs=48.3

Q ss_pred             ceeEEEeecCCCCCccHHHHHHHHHHhCCce-EEEEeccCCCC--cHHH----HHHHHHHHHHHHhcCCCCCCeEEeecC
Q 031293           69 KRVCLLIDTKWGVKPRDHELISLMERSQTKY-QVVLTKTDTVF--PIDV----ARRAMQIEESLKANNSLVQPVMMVSSK  141 (162)
Q Consensus        69 ~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~-ivv~nK~Dl~~--~~~~----~~~~~~~~~~~~~~~~~~~~i~~~Sa~  141 (162)
                      +.+++|..+............+.+...++|+ -+|+|+.....  ....    ....+.+.+.....+....-.++.-..
T Consensus       223 ~~~vlV~~p~~~~~~~~~~~~~~l~~~gi~v~gvV~N~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~iPl~~~  302 (324)
T 3zq6_A          223 TSFKMVVIPEEMSIYESERAMKALEKYSIHADGVIVNQVLPEESDCEFCNARRKLQQERLKQIREKFSDKVVAEVPLLKK  302 (324)
T ss_dssp             EEEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEEEEECCSCCCSHHHHHHHHHHHHHHHHHHHHTTTSEEEEEECCSS
T ss_pred             CeEEEEeCCcccHHHHHHHHHHHHHHCCCCccEEEEcCCccccCCChHHHHHHHHHHHHHHHHHHHcCCCcEEEecCCCC
Confidence            5778887665432233345667788888885 78889987542  1111    111123333333333322233455556


Q ss_pred             CCCCHHHHHHHHHHhh
Q 031293          142 SGAGIRSLRTVLSKIA  157 (162)
Q Consensus       142 ~~~g~~~l~~~i~~~~  157 (162)
                      .-.|++.|......++
T Consensus       303 e~~g~~~L~~~~~~l~  318 (324)
T 3zq6_A          303 EAKGIETLEKIAEQLY  318 (324)
T ss_dssp             CSCSHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHh
Confidence            6678888766655443

>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}

Probab=90.35  E-value=0.97  Score=32.81  Aligned_cols=87  Identities=5%  Similarity=-0.039  Sum_probs=46.9

Q ss_pred             ceeEEEeecCCCCCccHHHHHHHHHHhCCce-EEEEeccCCCC-c----HH----HHHHHHHHHHHHHhcCCCCCCeE--
Q 031293           69 KRVCLLIDTKWGVKPRDHELISLMERSQTKY-QVVLTKTDTVF-P----ID----VARRAMQIEESLKANNSLVQPVM--  136 (162)
Q Consensus        69 ~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~-ivv~nK~Dl~~-~----~~----~~~~~~~~~~~~~~~~~~~~~i~--  136 (162)
                      ..+++|..+............+.+...++|+ -+|+|+..... .    ..    .....+.+.+.-.....  .+++  
T Consensus       232 t~~vlVt~pe~~~~~ea~r~~~~L~~~gi~v~gvVvN~~~~~~~~~~~~~~~~~r~~~q~~~l~~i~~~~~~--~~~~~~  309 (348)
T 3io3_A          232 TTFICVCISEFLSLYETERMIQELMSYNMDVNSIVVNQLLFAEGDDHSCKRCESRWKMQKKYLDQMGELYED--YHLVKM  309 (348)
T ss_dssp             EEEEEEEESSHHHHHHHHHHHHHHHHTTCCCCEEEEEEECCCC-----CHHHHHHHHHHHHHHHHHHHHTTT--SEEEEE
T ss_pred             eEEEEEecCCccHHHHHHHHHHHHHHCCCCccEEEEcCCccccccCccCHHHHHHHHHHHHHHHHHHHHccC--CCEEEe
Confidence            5677777665433333445667788888885 78889987533 1    11    11222233332222322  3444  


Q ss_pred             EeecCCCCCHHHHHHHHHHhh
Q 031293          137 MVSSKSGAGIRSLRTVLSKIA  157 (162)
Q Consensus       137 ~~Sa~~~~g~~~l~~~i~~~~  157 (162)
                      +.-+..-.|++.|...-..++
T Consensus       310 pl~~~e~~G~~~L~~~~~~l~  330 (348)
T 3io3_A          310 PLLGCEIRGVENLKKFSKFLL  330 (348)
T ss_dssp             ECCSSCCCSHHHHHHHHHHHH
T ss_pred             cCCCCCCCCHHHHHHHHHHHc
Confidence            444555678887766555443

>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}

Probab=89.36  E-value=0.34  Score=32.77  Aligned_cols=64  Identities=16%  Similarity=0.213  Sum_probs=36.8

Q ss_pred             CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCC---ceEEEEeccC
Q 031293           31 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQT---KYQVVLTKTD  107 (162)
Q Consensus        31 ~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~---~~ivv~nK~D  107 (162)
                      ..+.++|+|+.-.            ......   ...+|.+++++.+...-......+++.+...+.   .+-+|+|+.+
T Consensus       119 yD~viiD~p~~~~------------~~~~~~---l~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~N~~~  183 (245)
T 3ea0_A          119 YDYIIVDFGASID------------HVGVWV---LEHLDELCIVTTPSLQSLRRAGQLLKLCKEFEKPISRIEIILNRAD  183 (245)
T ss_dssp             CSEEEEEEESSCC------------TTHHHH---GGGCSEEEEEECSSHHHHHHHHHHHHHHHTCSSCCSCEEEEEESTT
T ss_pred             CCEEEEeCCCCCc------------hHHHHH---HHHCCEEEEEecCcHHHHHHHHHHHHHHHHhCCCccceEEEEecCC
Confidence            4589999986411            112222   234589999887753211222334455555442   3789999998


Q ss_pred             CC
Q 031293          108 TV  109 (162)
Q Consensus       108 l~  109 (162)
                      .-
T Consensus       184 ~~  185 (245)
T 3ea0_A          184 TN  185 (245)
T ss_dssp             SC
T ss_pred             CC
Confidence            64

>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A

Probab=86.84  E-value=3.9  Score=28.45  Aligned_cols=14  Identities=14%  Similarity=0.138  Sum_probs=11.3

Q ss_pred             CceEEEEeccCCCC
Q 031293           97 TKYQVVLTKTDTVF  110 (162)
Q Consensus        97 ~~~ivv~nK~Dl~~  110 (162)
                      .++.+|+|+.|.-.
T Consensus       179 ~~~~vV~N~~~~~~  192 (286)
T 2xj4_A          179 MDWVVLRNRLATTE  192 (286)
T ss_dssp             CEEEEEEECCTTCC
T ss_pred             ccEEEEEeeecCCC
Confidence            67789999999754

>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}

Probab=85.83  E-value=7.7  Score=27.68  Aligned_cols=40  Identities=5%  Similarity=0.012  Sum_probs=26.7

Q ss_pred             ceeEEEeecCCCCCccHHHHHHHHHHhCCce-EEEEeccCC
Q 031293           69 KRVCLLIDTKWGVKPRDHELISLMERSQTKY-QVVLTKTDT  108 (162)
Q Consensus        69 ~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~-ivv~nK~Dl  108 (162)
                      +.+++|..+............+.+...++|+ -+|+|+...
T Consensus       222 t~~vlV~~pe~~~i~ea~~~~~~L~~~gi~v~gvVvN~~~~  262 (329)
T 2woo_A          222 TTFVCVCISEFLSLYETERMIQELTSYEIDTHNIVVNQLLL  262 (329)
T ss_dssp             EEEEEEEESSHHHHHHHHHHHHHHHHHTCEEEEEEEEEECC
T ss_pred             eEEEEEeCCCcchHHHHHHHHHHHHHCCCCCCEEEEeCCcC
Confidence            4677777765432233345667788788885 678999983

>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*

Probab=85.33  E-value=2.9  Score=30.14  Aligned_cols=88  Identities=6%  Similarity=-0.047  Sum_probs=45.7

Q ss_pred             ceeEEEeecCCCCCccHHHHHHHHHHhCCce-EEEEeccCCCC---c-HHH----HHHHHHHHHHHHhcCCCCCCeE--E
Q 031293           69 KRVCLLIDTKWGVKPRDHELISLMERSQTKY-QVVLTKTDTVF---P-IDV----ARRAMQIEESLKANNSLVQPVM--M  137 (162)
Q Consensus        69 ~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~-ivv~nK~Dl~~---~-~~~----~~~~~~~~~~~~~~~~~~~~i~--~  137 (162)
                      ..+++|..+..-.........+.+...++|+ -+|+|+.....   . ...    ....+.+.+.-..... ..+++  +
T Consensus       223 t~~vlVt~pe~~~~~ea~r~~~~L~~~gi~v~gvVvN~~~~p~~~~~~~~~~~r~~~q~~~l~~i~~~~~~-~~~~~~~p  301 (334)
T 3iqw_A          223 TTFVCVCIPEFLSLYETERMIQELANYGIDTHCIVVNQLLFPKPGSDCEQCTARRRMQKKYLDQIEELYDE-EFNVVKMP  301 (334)
T ss_dssp             EEEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEEEEECCCCTTCCCHHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE
T ss_pred             eeEEEEECCCccHHHHHHHHHHHHHHCCCCccEEEECCCcCcccCCcCHHHHHHHHHHHHHHHHHHHhccC-CCCEEEec
Confidence            4677777665432333445667888889885 78889986421   1 111    1122222222222211 02444  4


Q ss_pred             eecCCCCCHHHHHHHHHHhh
Q 031293          138 VSSKSGAGIRSLRTVLSKIA  157 (162)
Q Consensus       138 ~Sa~~~~g~~~l~~~i~~~~  157 (162)
                      .-+..-.|++.|...-..++
T Consensus       302 l~~~e~~G~~~L~~~~~~l~  321 (334)
T 3iqw_A          302 LLVEEVRGKERLEKFSEMLI  321 (334)
T ss_dssp             CCSSCCCHHHHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHc
Confidence            44455677777766555444

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=85.26  E-value=7.9  Score=27.27  Aligned_cols=71  Identities=20%  Similarity=0.224  Sum_probs=36.0

Q ss_pred             CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhC-Cc-eEEEEeccC
Q 031293           30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQ-TK-YQVVLTKTD  107 (162)
Q Consensus        30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~-~~-~ivv~nK~D  107 (162)
                      +..+.++||||.....  .   ..+.. +...+. ....+.+++|+|+..+.    ..+.+..+... .+ .-+++||.|
T Consensus       182 ~~dlvIiDT~G~~~~~--~---~~~~e-l~~~l~-~~~~~~~~lVl~at~~~----~~~~~~~~~~~~l~~~giVltk~D  250 (296)
T 2px0_A          182 EYDHVFVDTAGRNFKD--P---QYIDE-LKETIP-FESSIQSFLVLSATAKY----EDMKHIVKRFSSVPVNQYIFTKID  250 (296)
T ss_dssp             GSSEEEEECCCCCTTS--H---HHHHH-HHHHSC-CCTTEEEEEEEETTBCH----HHHHHHTTTTSSSCCCEEEEECTT
T ss_pred             CCCEEEEeCCCCChhh--H---HHHHH-HHHHHh-hcCCCeEEEEEECCCCH----HHHHHHHHHHhcCCCCEEEEeCCC
Confidence            4569999999983221  0   11111 222222 11246788899887531    12222222221 22 356779999


Q ss_pred             CCCc
Q 031293          108 TVFP  111 (162)
Q Consensus       108 l~~~  111 (162)
                      ....
T Consensus       251 ~~~~  254 (296)
T 2px0_A          251 ETTS  254 (296)
T ss_dssp             TCSC
T ss_pred             cccc
Confidence            8643

>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*

Probab=84.37  E-value=5  Score=29.07  Aligned_cols=41  Identities=7%  Similarity=0.041  Sum_probs=27.8

Q ss_pred             ccceeEEEeecCCCCCccHHHHHHHHHHhCCce-EEEEeccC
Q 031293           67 SLKRVCLLIDTKWGVKPRDHELISLMERSQTKY-QVVLTKTD  107 (162)
Q Consensus        67 ~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~-ivv~nK~D  107 (162)
                      .++.+++|..+............+.+...++++ -+|+|++.
T Consensus       234 ~~~~~vlV~~pe~~si~ea~r~~~~L~~~g~~~~gvVvN~v~  275 (354)
T 2woj_A          234 DLTTFVCVCISEFLSLYETERLIQELISYDMDVNSIIVNQLL  275 (354)
T ss_dssp             TTEEEEEEEESSHHHHHHHHHHHHHHHHTTCCEEEEEEEEEC
T ss_pred             CCcEEEEEeCCCcchHHHHHHHHHHHHHcCCCCCEEEEecCC
Confidence            357888888876432233345567777778774 68899998

>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A

Probab=84.08  E-value=2.4  Score=31.18  Aligned_cols=34  Identities=3%  Similarity=-0.052  Sum_probs=20.5

Q ss_pred             CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecC
Q 031293           30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTK   78 (162)
Q Consensus        30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~   78 (162)
                      +..+.++|||..-            .......+.   .+|.+++++.+.
T Consensus       247 ~yD~VIID~pP~~------------~~~~~~al~---~aD~vliv~~p~  280 (403)
T 3ez9_A          247 DYDFIFIDTGPHL------------DPFLLNGLA---ASDLLLTPTPPA  280 (403)
T ss_dssp             GCSEEEEEECSSC------------SHHHHHHHH---HCSEEEEEECSS
T ss_pred             cCCEEEEECCCCc------------cHHHHHHHH---HCCEEEEEecCc
Confidence            3469999998431            222233332   349999988764

>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*

Probab=82.86  E-value=4.2  Score=31.55  Aligned_cols=83  Identities=17%  Similarity=0.166  Sum_probs=43.7

Q ss_pred             cceeEEEeecCCCCCccHHHHHHHHHHhCCc-eEEEEeccCCCC---cHHH----HHHHHHHHHHHHhcCCCCCCeEEee
Q 031293           68 LKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDTVF---PIDV----ARRAMQIEESLKANNSLVQPVMMVS  139 (162)
Q Consensus        68 ~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~-~ivv~nK~Dl~~---~~~~----~~~~~~~~~~~~~~~~~~~~i~~~S  139 (162)
                      ++.+++|..+............+.+...+++ .-+|+|+.+-..   ....    ....+.+. .+..........++.-
T Consensus       490 ~~~vvlV~~p~~~~~~~a~~~~~~l~~~g~~~~gvVvN~~~~~~~~~~~~~~~~~~~~~~~l~-~l~~~~~~~v~~iP~~  568 (589)
T 1ihu_A          490 RTKVLLVTLPETTPVLEAANLQADLERAGIHPWGWIINNSLSIADTRSPLLRMRAQQELPQIE-SVKRQHASRVALVPVL  568 (589)
T ss_dssp             TEEEEEEECSSHHHHHHHHHHHHHHHHTTCCCCEEEEEEESTTSCCCCHHHHHHHHHHHHHHH-HHHTTTCSSEEEEECC
T ss_pred             CCEEEEEeCCCccHHHHHHHHHHHHHHCCCCCCEEEEeCCcCCCCCcCHHHHHHHHHHHHHHH-HHHHhcCCcEEEccCC
Confidence            4778888776532222334456677777777 478899987531   1111    12222232 2333322112344555


Q ss_pred             cCCCCCHHHHHH
Q 031293          140 SKSGAGIRSLRT  151 (162)
Q Consensus       140 a~~~~g~~~l~~  151 (162)
                      ...-.|++.|..
T Consensus       569 ~~e~~g~~~l~~  580 (589)
T 1ihu_A          569 ASEPTGIDKLKQ  580 (589)
T ss_dssp             SSCCCSHHHHHH
T ss_pred             CCCCCCHHHHHH
Confidence            666778777654

>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A

Probab=80.66  E-value=2.5  Score=27.95  Aligned_cols=40  Identities=13%  Similarity=0.120  Sum_probs=22.3

Q ss_pred             eeEEEeecCCCCCccHHHHHHHHHHhCCce-EEEEeccCCC
Q 031293           70 RVCLLIDTKWGVKPRDHELISLMERSQTKY-QVVLTKTDTV  109 (162)
Q Consensus        70 ~vi~vid~~~~~~~~~~~~~~~l~~~~~~~-ivv~nK~Dl~  109 (162)
                      .++++..+...-.......++.+...+.++ -+|+|+.|.-
T Consensus       140 ~vi~v~~~~~~~~~~~~~~i~~l~~~~~~i~gvvlN~~~~~  180 (224)
T 1byi_A          140 PVILVVGVKLGCINHAMLTAQVIQHAGLTLAGWVANDVTPP  180 (224)
T ss_dssp             CEEEEEECSTTHHHHHHHHHHHHHHTTCCEEEEEEECCSSC
T ss_pred             CEEEEecCCCCcHHHHHHHHHHHHHCCCcEEEEEEeCCCCc
Confidence            467777764321111222334555556774 5889999864

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=80.49  E-value=1.4  Score=32.57  Aligned_cols=60  Identities=5%  Similarity=0.018  Sum_probs=39.1

Q ss_pred             hCCceEEEEeccCC--C-CcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCC---------------------CCCHHHHH
Q 031293           95 SQTKYQVVLTKTDT--V-FPIDVARRAMQIEESLKANNSLVQPVMMVSSKS---------------------GAGIRSLR  150 (162)
Q Consensus        95 ~~~~~ivv~nK~Dl--~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~---------------------~~g~~~l~  150 (162)
                      ...|+++++|+.|.  . +.   ....+.+++.....++ ..+++++||..                     +.|++.+.
T Consensus       223 t~kp~~y~~Nv~e~~~~~~~---~~~~~~~~~~~~~~~p-~~~~v~~sa~~E~~l~~l~~~~~~~~l~~~g~~~gl~~~i  298 (392)
T 1ni3_A          223 TAKPVIYLVNMSERDFLRQK---NKYLPKIKKWIDENSP-GDTLIPMSVAFEERLTNFTEEEAIEECKKLNTKSMLPKII  298 (392)
T ss_dssp             GGSCEEEEEECCHHHHTTTC---CSSHHHHHHHHHTTST-TCCEEEECHHHHHHHTTSCHHHHHHHHHHTTCCCSHHHHH
T ss_pred             ccCceEEEEEecchhhcccc---hHHHHHHHHHHHhcCC-CCeEEEEEhHHHHHHhhCCHHHHHHHHHHhCCcccHHHHH
Confidence            36899999999983  1 11   1123344444444331 14799999876                     68899988


Q ss_pred             HHHHHhhh
Q 031293          151 TVLSKIAR  158 (162)
Q Consensus       151 ~~i~~~~~  158 (162)
                      ....+++.
T Consensus       299 ~~~~~~L~  306 (392)
T 1ni3_A          299 VTGYNALN  306 (392)
T ss_dssp             HHHHHHTT
T ss_pred             HHHHHHhC
Confidence            88877664

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	162
d1svia_	195	c.37.1.8 (A:) Probable GTPase EngB {Bacillus subti	7e-10
d1puia_	188	c.37.1.8 (A:) Probable GTPase EngB {Escherichia co	1e-09
d1tq4a_	400	c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (	4e-06
d1udxa2	180	c.37.1.8 (A:157-336) Obg GTP-binding protein middl	5e-05
d1lnza2	185	c.37.1.8 (A:158-342) Obg GTP-binding protein middl	5e-04

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

 Score = 53.2 bits (126), Expect = 7e-10
 Identities = 42/156 (26%), Positives = 80/156 (51%), Gaps = 2/156 (1%)

Query: 1   MLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 60
            +N+L  +  + RTS KPG TQT+NF+ +  +L  VD+PGYGFA   +  ++AW  +++ 
Sbjct: 39  FINSLINRKNLARTSSKPGKTQTLNFYIINDELHFVDVPGYGFAKVSKSEREAWGRMIET 98

Query: 61  YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQ 120
           Y++TR  LK V  ++D +      D ++   ++       V+ TK D +      + A  
Sbjct: 99  YITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKIPKGKWDKHAKV 158

Query: 121 IEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKI 156
           + ++L  +      +++ SS++  G       + K+
Sbjct: 159 VRQTLNIDPE--DELILFSSETKKGKDEAWGAIKKM 192

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} Length = 188

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

 Score = 52.5 bits (124), Expect = 1e-09
 Identities = 55/154 (35%), Positives = 78/154 (50%), Gaps = 1/154 (0%)

Query: 1   MLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 60
            LN LT Q  + RTS  PG TQ IN F++     LVDLPGYG+A   EE+K  W+  + E
Sbjct: 32  ALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQRALGE 91

Query: 61  YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQ 120
           Y+  R SL+ + +L+D +  +K  D ++I     S     V+LTK D +       +   
Sbjct: 92  YLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGARKAQLNM 151

Query: 121 IEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLS 154
           + E++ A N  V  V   SS    G+  LR  L 
Sbjct: 152 VREAVLAFNGDV-QVETFSSLKKQGVDKLRQKLD 184

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} Length = 400

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.2 bits (101), Expect = 4e-06
 Identities = 23/176 (13%), Positives = 48/176 (27%), Gaps = 30/176 (17%)

Query: 1   MLNALTRQWGVVRTSDKPGLTQTI-----NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWE 55
            +N L         + K G+ +               +   DLPG G      +      
Sbjct: 72  FINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPD------ 125

Query: 56  ELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVA 115
                Y+      +    +I +    K  D ++   +   + ++  V TK D+    +  
Sbjct: 126 ----TYLEKMKFYEYDFFIIISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEAD 181

Query: 116 RRA-------------MQIEESLKANNSLVQPVMMVSSK--SGAGIRSLRTVLSKI 156
                           +    + + N     P+ ++S+K         L   L   
Sbjct: 182 GEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISD 237

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} Length = 180

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

 Score = 39.2 bits (90), Expect = 5e-05
 Identities = 29/163 (17%), Positives = 54/163 (33%), Gaps = 18/163 (11%)

Query: 2   LNALTRQWGVVRTSDKPGLTQTIN----FFKLGTKLCLVDLPGYGFAYAKEE--VKDAWE 55
           L A+TR     + +  P  T + N          +  L D+PG     ++ +    +   
Sbjct: 18  LAAMTRAH--PKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLR 75

Query: 56  ELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVA 115
            + +  V   V       L   +   K       +L+ R          K D +      
Sbjct: 76  HIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVAL---NKVDLLEE---- 128

Query: 116 RRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR 158
                ++    A       V+ VS+ +GAG+ +L+  L  + R
Sbjct: 129 ---EAVKALADALAREGLAVLPVSALTGAGLPALKEALHALVR 168

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

 Score = 36.5 bits (83), Expect = 5e-04
 Identities = 24/163 (14%), Positives = 51/163 (31%), Gaps = 20/163 (12%)

Query: 2   LNALTRQWGVVRTSDKPGLTQTIN----FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEEL 57
           L+ ++      + +D    T   N        G    + DLPG        +      + 
Sbjct: 18  LSVVSSAK--PKIADYHFTTLVPNLGMVETDDGRSFVMADLPG--LIEGAHQGVGLGHQF 73

Query: 58  VKEYVSTRVSLKRVCLLID-----TKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPI 112
           ++    TRV +  + +            +          +  ++    +V  K D     
Sbjct: 74  LRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMP--- 130

Query: 113 DVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSK 155
                A +  E+ K   +   PV  +S+ +  G+R L   ++ 
Sbjct: 131 ----EAAENLEAFKEKLTDDYPVFPISAVTREGLRELLFEVAN 169

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	162
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	99.92
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.9
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	99.88
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.88
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.87
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	99.86
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.85
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	99.82
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	99.81
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.81
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.8
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	99.78
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	99.77
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	99.77
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.76
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	99.72
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	99.72
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	99.67
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	99.66
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	99.66
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	99.65
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	99.65
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	99.64
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.61
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.6
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	99.59
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	99.58
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	99.57
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.56
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	99.55
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	99.55
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.53
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	99.53
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	99.53
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	99.5
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	99.49
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	99.48
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	99.48
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	99.47
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	99.47
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.46
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	99.45
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	99.45
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.45
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	99.45
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	99.44
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	99.44
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	99.44
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	99.44
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	99.44
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	99.43
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	99.43
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	99.43
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	99.43
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.42
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	99.42
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	99.42
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	99.4
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	99.39
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	99.39
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	99.37
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	99.36
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.34
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	99.34
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	99.34
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	99.33
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	99.33
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	99.32
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	99.3
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	99.27
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	99.27
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.27
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	99.24
d2fh5b1	207	Signal recognition particle receptor beta-subunit	99.23
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.22
d1nrjb_	209	Signal recognition particle receptor beta-subunit	99.19
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	99.15
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	99.13
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	99.12
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	99.11
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	99.06
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.93
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.82
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	98.7
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	98.65
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	98.64
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	98.59
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	98.5
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	98.39
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	98.29
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.08
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	98.08
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	98.03
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	97.6
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	97.48
d1j8yf2	211	GTPase domain of the signal sequence recognition p	96.93
d2qy9a2	211	GTPase domain of the signal recognition particle r	96.57
d1vmaa2	213	GTPase domain of the signal recognition particle r	96.23
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	95.95
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	94.66
d1ls1a2	207	GTPase domain of the signal sequence recognition p	94.53
d1okkd2	207	GTPase domain of the signal recognition particle r	94.34
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	94.3
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	91.45
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	87.44

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.92  E-value=1.1e-23  Score=140.86  Aligned_cols=156  Identities=27%  Similarity=0.488  Sum_probs=120.6

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEeCCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCC
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG   80 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~   80 (162)
                      |+|+|+|....+.++..+++|...........+.++|++|.+.........+....++..+......++++++++|++.+
T Consensus        39 Lin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~viD~~~~  118 (195)
T d1svia_          39 FINSLINRKNLARTSSKPGKTQTLNFYIINDELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHA  118 (195)
T ss_dssp             HHHHHHTC-------------CCEEEEEETTTEEEEECCCBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSC
T ss_pred             HHHHhcCCCceEEeecccceeeecccccccccceEEEEEeeccccccccccchhhhHHhhhhccccchhhhhhhhhcccc
Confidence            68999998667789999999999888888888999999998777666665555566677777888888999999999999


Q ss_pred             CCccHHHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293           81 VKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR  158 (162)
Q Consensus        81 ~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~  158 (162)
                      +...+.++++.+...++|+++|+||+|+..+....+..+.+++.+....  ..+++++||++|.|+++++++|.+.+.
T Consensus       119 ~~~~~~~~~~~l~~~~~piivv~NK~D~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~SA~~~~gi~el~~~i~~~l~  194 (195)
T d1svia_         119 PSNDDVQMYEFLKYYGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDP--EDELILFSSETKKGKDEAWGAIKKMIN  194 (195)
T ss_dssp             CCHHHHHHHHHHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCT--TSEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred             ccccccccccccccccCcceechhhccccCHHHHHHHHHHHHHHhcccC--CCCEEEEeCCCCCCHHHHHHHHHHHhC
Confidence            9888899999999999999999999999877777777777766665433  358999999999999999999988763

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.90  E-value=4.4e-23  Score=136.57  Aligned_cols=153  Identities=21%  Similarity=0.360  Sum_probs=110.3

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEeCCceEEEcCCCCccccc-CHHHHHHHHHHHHH-HHhcCcccceeEEEeecC
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYA-KEEVKDAWEELVKE-YVSTRVSLKRVCLLIDTK   78 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~ivDtpG~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~vi~vid~~   78 (162)
                      |||+|+++  .+.++++||+|+++..+..+. +.++||||+|.... .....+.+...+.. +......+|++++++|++
T Consensus        16 Lin~l~~~--~~~~~~~~g~T~~~~~~~~~~-~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vvD~~   92 (184)
T d2cxxa1          16 LIYRLTGK--KVRRGKRPGVTRKIIEIEWKN-HKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGK   92 (184)
T ss_dssp             HHHHHHSC--CCSSSSSTTCTTSCEEEEETT-EEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETT
T ss_pred             HHHHHhCC--CceeeCCCCEeeccccccccc-ceecccCCceeccccccccccccchhhhhhhhhcccccchheeeeecc
Confidence            68999998  356899999999988777655 89999999977643 33344444443333 344556789999999986


Q ss_pred             C-----------CCCccHHHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhc-CCCCCCeEEeecCCCCCH
Q 031293           79 W-----------GVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKAN-NSLVQPVMMVSSKSGAGI  146 (162)
Q Consensus        79 ~-----------~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~Sa~~~~g~  146 (162)
                      .           +....+.++++.+...++|+++|+||+|++...+.  ..+.+.+.+... ......++++||++|.|+
T Consensus        93 ~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~p~iiv~NK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi  170 (184)
T d2cxxa1          93 AAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNVQE--VINFLAEKFEVPLSEIDKVFIPISAKFGDNI  170 (184)
T ss_dssp             HHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCHHH--HHHHHHHHHTCCGGGHHHHEEECCTTTCTTH
T ss_pred             ccchhhhhhhhccccHHHHHHHHHHHHcCCCEEEEEeeeehhhhHHH--HHHHHHHHhcccccccCCeEEEEECCCCCCH
Confidence            3           45677778888888889999999999998854432  222333222211 111135889999999999


Q ss_pred             HHHHHHHHHhhh
Q 031293          147 RSLRTVLSKIAR  158 (162)
Q Consensus       147 ~~l~~~i~~~~~  158 (162)
                      ++|+++|.+.++
T Consensus       171 ~~L~~~i~~~l~  182 (184)
T d2cxxa1         171 ERLKNRIFEVIR  182 (184)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcc
Confidence            999999998876

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=99.88  E-value=4.4e-22  Score=133.14  Aligned_cols=114  Identities=18%  Similarity=0.255  Sum_probs=96.6

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCC-ccHHHHHHHHHHhCCc-eEEEEeccCCC
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVK-PRDHELISLMERSQTK-YQVVLTKTDTV  109 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~-~~~~~~~~~l~~~~~~-~ivv~nK~Dl~  109 (162)
                      ++.++|||||             ..+...+.++...+|.+++++|+.++.. ....+++..+...++| +++++||+|+.
T Consensus        79 ~~~~iDtPGh-------------~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~~~~~iiv~inK~D~~  145 (195)
T d1kk1a3          79 RVSFIDAPGH-------------EALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELV  145 (195)
T ss_dssp             EEEEEECSSH-------------HHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGS
T ss_pred             eEeeeccchh-------------hhhhHHhhcccccccccccccchhhhhhhhhhHHHHHHHHHhcCccceeeeecccch
Confidence            4899999999             8899999999999999999999999864 4456788888877877 78889999999


Q ss_pred             CcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293          110 FPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR  158 (162)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~  158 (162)
                      +........+.+.+.+........+++++||++|.|+++|++.|.+.++
T Consensus       146 d~~~~~~~~~~~~~~~~~~~~~~~~iIpiSA~~G~ni~~Ll~~I~~~iP  194 (195)
T d1kk1a3         146 DKEKALENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIP  194 (195)
T ss_dssp             CHHHHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             hhHHHHHHHHHHHHHhccccCCCCeEEEEECCCCCCHHHHHHHHHHHCc
Confidence            8776666666777777766666679999999999999999999987654

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.88  E-value=4e-22  Score=131.64  Aligned_cols=145  Identities=26%  Similarity=0.407  Sum_probs=103.8

Q ss_pred             ChhcccCCCCceeccC------CCCcceEEEE--EEe-CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCccccee
Q 031293            1 MLNALTRQWGVVRTSD------KPGLTQTINF--FKL-GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRV   71 (162)
Q Consensus         1 lin~L~~~~~~~~~~~------~~g~t~~~~~--~~~-~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   71 (162)
                      |+|+|++.. .....+      ..|.|.....  +.. +..+.++|+||+             ..+.+........+|.+
T Consensus        21 L~n~L~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~g~-------------~~~~~~~~~~l~~~d~~   86 (179)
T d1wb1a4          21 LSKVLTEIA-STSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGH-------------ADLIRAVVSAADIIDLA   86 (179)
T ss_dssp             HHHHHHTTC---------------------CCCEEEETTEEEEECCCSSH-------------HHHHHHHHHHTTSCCEE
T ss_pred             HHHHHHHhc-CceecccccceeeeeeeccccccccccCCccccccccccc-------------cccccchhhhhhhcccc
Confidence            589998763 222222      3343333322  222 556899999999             77788888888889999


Q ss_pred             EEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHh-cCCCCCCeEEeecCCCCCHHHHH
Q 031293           72 CLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKA-NNSLVQPVMMVSSKSGAGIRSLR  150 (162)
Q Consensus        72 i~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~Sa~~~~g~~~l~  150 (162)
                      ++++|++++...++.+++..+...++|+++|+||+|++..+......+..+..+.. .+....+++++||++|+|+++|+
T Consensus        87 ilv~d~~~g~~~~~~~~~~~~~~~~~p~iiv~NKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~iSA~~g~gi~eL~  166 (179)
T d1wb1a4          87 LIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDELK  166 (179)
T ss_dssp             EEEEETTTCSCHHHHHHHHHHHHTTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTTTCTTHHHHH
T ss_pred             ccccccccccchhhhhhhhhhhhcCCcceeccccccccCHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEccCCcCHHHHH
Confidence            99999999998888888888888999999999999999776655444444444433 23334699999999999999999


Q ss_pred             HHHHHhhhh
Q 031293          151 TVLSKIARF  159 (162)
Q Consensus       151 ~~i~~~~~~  159 (162)
                      ++|.+.++.
T Consensus       167 ~~I~~~l~~  175 (179)
T d1wb1a4         167 NLIITTLNN  175 (179)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHhcCCc
Confidence            999987764

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.87  E-value=3.5e-22  Score=131.74  Aligned_cols=145  Identities=19%  Similarity=0.161  Sum_probs=105.9

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT   77 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~   77 (162)
                      |+|+|++. ..+.++..+++|+.......   +.++.++||||+......  ..   ..+...+......+|++++|+|+
T Consensus        21 Lin~l~~~-~~~~~~~~~~tt~~~~~~~~~~~~~~~~~~DtpG~~~~~~~--~~---~~~~~~~~~~~~~ad~il~v~D~   94 (178)
T d1wf3a1          21 LLNNLLGV-KVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDA--LG---EFMDQEVYEALADVNAVVWVVDL   94 (178)
T ss_dssp             HHHHHHTS-CCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSH--HH---HHHHHHHHHHTSSCSEEEEEEET
T ss_pred             HHHHHhCC-CceeecccCCcccccccceeeeeeeeeeecccccccccccc--cc---hhcccccccccccccceeeeech
Confidence            58999999 57888999999986665433   556999999998554211  11   22344455566778999999999


Q ss_pred             CCCCCccHHHHHHHHHHh--CCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHH
Q 031293           78 KWGVKPRDHELISLMERS--QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSK  155 (162)
Q Consensus        78 ~~~~~~~~~~~~~~l~~~--~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~  155 (162)
                      +.+....+..+...++..  ++|+++|+||+|+....+  ...+.+.+.+     ....++++||++|.|+++|+++|.+
T Consensus        95 ~~~~~~~~~~i~~~l~~~~~~~piilv~NK~Dl~~~~~--~~~~~~~~~~-----~~~~~~~iSA~~~~gi~~L~~~i~~  167 (178)
T d1wf3a1          95 RHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKYPE--EAMKAYHELL-----PEAEPRMLSALDERQVAELKADLLA  167 (178)
T ss_dssp             TSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCSSHH--HHHHHHHHTS-----TTSEEEECCTTCHHHHHHHHHHHHT
T ss_pred             hhhhcccccchhhheeccccchhhhhhhcccccccCHH--HHHHHHHhhc-----ccCceEEEecCCCCCHHHHHHHHHH
Confidence            998887777777777654  579999999999986543  2222332222     1247889999999999999999998


Q ss_pred             hhh
Q 031293          156 IAR  158 (162)
Q Consensus       156 ~~~  158 (162)
                      .++
T Consensus       168 ~lp  170 (178)
T d1wf3a1         168 LMP  170 (178)
T ss_dssp             TCC
T ss_pred             hCC
Confidence            764

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.86  E-value=4.4e-21  Score=129.16  Aligned_cols=114  Identities=19%  Similarity=0.234  Sum_probs=97.4

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCC-CccHHHHHHHHHHhCC-ceEEEEeccCCC
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV-KPRDHELISLMERSQT-KYQVVLTKTDTV  109 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~-~~~~~~~~~~l~~~~~-~~ivv~nK~Dl~  109 (162)
                      ++.++|||||             .+++++++++...+|++++|+|+.+++ ..+..+++..+...++ |+++++||+|++
T Consensus        87 ~~~iiD~PGH-------------~df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~~~~~i~~iIV~vNK~Dl~  153 (205)
T d2qn6a3          87 RISFIDAPGH-------------EVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVV  153 (205)
T ss_dssp             EEEEEECSCH-------------HHHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECGGGS
T ss_pred             EEEEeccchH-------------HHHHhhhhcceeccccccccccccccccchhHHHHHHHHHHcCCceeeeccccCCCc
Confidence            5899999999             899999999999999999999999987 5566778888888786 688899999999


Q ss_pred             CcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293          110 FPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR  158 (162)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~  158 (162)
                      +..+.......+.+.+........+++++||++|.|+++|++.|.+.++
T Consensus       154 ~~~~~~~~~~~~~~~l~~~~~~~~p~ipiSA~~g~nI~~L~e~i~~~ip  202 (205)
T d2qn6a3         154 SKEEALSQYRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIK  202 (205)
T ss_dssp             CHHHHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             cchHHHHHHHHHHHHhccccCCCCeEEEEeCCCCCChHHHHHHHHhhCC
Confidence            8776666666666777666666689999999999999999999987654

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=99.85  E-value=8.3e-21  Score=126.63  Aligned_cols=131  Identities=18%  Similarity=0.258  Sum_probs=105.1

Q ss_pred             ccCCCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHH
Q 031293           14 TSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELIS   90 (162)
Q Consensus        14 ~~~~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~   90 (162)
                      .+...|.|.+..+..+   +..+.++|||||             ..|+++++++...+|++++|+|+.+++..++.+++.
T Consensus        46 ~Er~rgiTi~~~~~~~~~~~~~~~~iDtPGh-------------~~f~~~~~~~~~~aD~allVVda~~G~~~QT~~~~~  112 (196)
T d1d2ea3          46 EERARGITINAAHVEYSTAARHYAHTDCPGH-------------ADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLL  112 (196)
T ss_dssp             EEEETTEEEECEEEEEECSSCEEEEEECSSH-------------HHHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHH
T ss_pred             hhcCCCccCCcceEEEEeceeeEEeecCcch-------------HHHHHHHHHHHhhcCeEEEEEEcCCCCchhHHHHHH
Confidence            3456788887765544   667999999999             889999999999999999999999999999999999


Q ss_pred             HHHHhCC-ceEEEEeccCCCCcHH-HHHHHHHHHHHHHhcCC--CCCCeEEeecCCC----------CCHHHHHHHHHHh
Q 031293           91 LMERSQT-KYQVVLTKTDTVFPID-VARRAMQIEESLKANNS--LVQPVMMVSSKSG----------AGIRSLRTVLSKI  156 (162)
Q Consensus        91 ~l~~~~~-~~ivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~--~~~~i~~~Sa~~~----------~g~~~l~~~i~~~  156 (162)
                      .+...++ |+|+++||+|+....+ .+...+.++..+...+.  ...|++++||++|          .|+.+|++.|.+.
T Consensus       113 ~a~~~~~~~iIv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~pii~iSa~~g~~~~~~~~~~~~~~~Lldai~~~  192 (196)
T d1d2ea3         113 LARQIGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTY  192 (196)
T ss_dssp             HHHHTTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHH
T ss_pred             HHHHhcCCcEEEEEecccccccHHHHHHHHHHHHHHHHHhCCCcccCEEEEEEccccccccCcccccCCHHHHHHHHHhh
Confidence            9888775 5888999999986443 34445566666665443  3468999999998          5888998888765


Q ss_pred             h
Q 031293          157 A  157 (162)
Q Consensus       157 ~  157 (162)
                      +
T Consensus       193 i  193 (196)
T d1d2ea3         193 I  193 (196)
T ss_dssp             S
T ss_pred             C
Confidence            4

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.82  E-value=2.3e-20  Score=122.09  Aligned_cols=147  Identities=16%  Similarity=0.184  Sum_probs=93.0

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT   77 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~   77 (162)
                      |+|+|++. ..+.++..+++|+.......   ..++.++|+||+........ .   ......+......+|++++++++
T Consensus        16 Li~~L~~~-~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~-~---~~~~~~~~~~~~~ad~i~~~~~~   90 (171)
T d1mkya1          16 LFNKLVKK-KKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDII-S---QKMKEVTLNMIREADLVLFVVDG   90 (171)
T ss_dssp             HHHHHHC---------------CCSEEEEEETTEEEEEEECTTTTSSGGGCC-C---HHHHHHHHHHHTTCSEEEEEEET
T ss_pred             HHHHHhCC-CcceecccCceeeccccccccccccccccccccceeeeecccc-c---cccccccccccccCcEEEEeecc
Confidence            68999998 56778999999986655433   44588999999744321100 0   12222333334556999999999


Q ss_pred             CCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293           78 KWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  157 (162)
Q Consensus        78 ~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~  157 (162)
                      +++....+..++..+...++|+++|+||+|+.++...     .....+...+  ..+++++||++|.|+++|+++|.+.+
T Consensus        91 ~~~~~~~~~~~~~~l~~~~~pviiv~NK~Dl~~~~~~-----~~~~~~~~~~--~~~~i~iSAk~g~gid~L~~~i~~~l  163 (171)
T d1mkya1          91 KRGITKEDESLADFLRKSTVDTILVANKAENLREFER-----EVKPELYSLG--FGEPIPVSAEHNINLDTMLETIIKKL  163 (171)
T ss_dssp             TTCCCHHHHHHHHHHHHHTCCEEEEEESCCSHHHHHH-----HTHHHHGGGS--SCSCEECBTTTTBSHHHHHHHHHHHH
T ss_pred             cccccccccccccccccccccccccchhhhhhhhhhh-----HHHHHHHhcC--CCCeEEEecCCCCCHHHHHHHHHHhC
Confidence            9988888888888888889999999999998633221     2222222222  24789999999999999999999877


Q ss_pred             hh
Q 031293          158 RF  159 (162)
Q Consensus       158 ~~  159 (162)
                      +.
T Consensus       164 ~e  165 (171)
T d1mkya1         164 EE  165 (171)
T ss_dssp             HH
T ss_pred             CC
Confidence            53

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.81  E-value=2.8e-20  Score=123.12  Aligned_cols=154  Identities=21%  Similarity=0.203  Sum_probs=100.8

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEE--EEe-CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINF--FKL-GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT   77 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~--~~~-~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~   77 (162)
                      |+|+|++. ..+.++..+++|+....  +.. +..+.++|+||++......... ........+......+|++++++|+
T Consensus        24 Lin~l~~~-~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~dvii~v~d~  101 (186)
T d1mkya2          24 LFNAILNK-ERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRT-VEKYSNYRVVDSIEKADVVVIVLDA  101 (186)
T ss_dssp             HHHHHHTS-TTEEECCCC------CCEEEEETTEEEEESSCSCC------------CCSCCHHHHHHHHHCSEEEEEEET
T ss_pred             HHHHHHCC-CcceeecccccccccceeeeccCCceeeeeccCCccccccccccc-cccchhHHHHHHHhcCCEEEEeecc
Confidence            68999998 57889999998876543  333 5568999999985431110000 0011112233333557999999999


Q ss_pred             CCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcHH--HHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHH
Q 031293           78 KWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPID--VARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSK  155 (162)
Q Consensus        78 ~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~  155 (162)
                      ..+.......++..+...+.|+++|+||+|+.....  ..+..+.+.+.+..  ....+++++||++|.|+++|+++|.+
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~vSa~~g~gv~~L~~~i~~  179 (186)
T d1mkya2         102 TQGITRQDQRMAGLMERRGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYF--IDYSPLIFTSADKGWNIDRMIDAMNL  179 (186)
T ss_dssp             TTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGG--GTTSCEEECBTTTTBSHHHHHHHHHH
T ss_pred             cccchhhHHHHHHHHHHcCCceeeeccchhhhcchhhhhhhHHHHHHHHhcc--cCCCeEEEEeCCCCCCHHHHHHHHHH
Confidence            999888888888888888999999999999874432  23333334333322  23468999999999999999999988


Q ss_pred             hhh
Q 031293          156 IAR  158 (162)
Q Consensus       156 ~~~  158 (162)
                      .++
T Consensus       180 ~~~  182 (186)
T d1mkya2         180 AYA  182 (186)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            765

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.81  E-value=8.5e-20  Score=120.30  Aligned_cols=144  Identities=21%  Similarity=0.226  Sum_probs=93.1

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEE--EEe--CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEee
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINF--FKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLID   76 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~--~~~--~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid   76 (162)
                      |+|+|++. .. .+++.++.|+....  ...  +.++.++||||+......      .......++.....++.+++++|
T Consensus        17 Lin~L~~~-~~-~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~------~~~~~~~~l~~~~~~~~~~~~~d   88 (180)
T d1udxa2          17 LLAAMTRA-HP-KIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASE------GKGLGLEFLRHIARTRVLLYVLD   88 (180)
T ss_dssp             HHHHHCSS-CC-EECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGG------SCCSCHHHHHHHTSSSEEEEEEE
T ss_pred             HHHHHhCC-CC-ceeccCCCceeeeeceeeecCCCeEEEcCCCeeecCchH------HHHHHHHHHHHHHhhhhhhhhcc
Confidence            68999998 33 35556666554443  222  556999999998443110      01223344445566699999999


Q ss_pred             cCCCCCccHHHHHHHHH-----HhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHH
Q 031293           77 TKWGVKPRDHELISLME-----RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRT  151 (162)
Q Consensus        77 ~~~~~~~~~~~~~~~l~-----~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~  151 (162)
                      +.............++.     ..++|+++|+||+|+.++...+.    +.+.+...   ..+++++||++|+|+++|++
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~~~~~~~----~~~~~~~~---~~~~~~iSA~tg~gid~L~~  161 (180)
T d1udxa2          89 AADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKA----LADALARE---GLAVLPVSALTGAGLPALKE  161 (180)
T ss_dssp             TTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHHHHH----HHHHHHTT---TSCEEECCTTTCTTHHHHHH
T ss_pred             cccccccchhhhhhhhhccccccchhhhhhhhhhhhhhhHHHHHH----HHHHHHhc---CCeEEEEEcCCCCCHHHHHH
Confidence            86543222222223332     23589999999999997665543    33333433   35999999999999999999


Q ss_pred             HHHHhhhh
Q 031293          152 VLSKIARF  159 (162)
Q Consensus       152 ~i~~~~~~  159 (162)
                      .|.+.++.
T Consensus       162 ~i~~~l~~  169 (180)
T d1udxa2         162 ALHALVRS  169 (180)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHhh
Confidence            99887753

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.80  E-value=3.2e-19  Score=119.70  Aligned_cols=113  Identities=19%  Similarity=0.245  Sum_probs=90.0

Q ss_pred             CCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHH
Q 031293           17 KPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLME   93 (162)
Q Consensus        17 ~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~   93 (162)
                      .+|+|.+.....+   +.++.++|||||             ..++.+++++.+.+|++++|+|+.+++..++.+++..+.
T Consensus        50 ~rgiTi~~~~~~~~~~~~~i~iiDtPGh-------------~df~~~~~~~~~~aD~avlVvda~~Gv~~qt~~~~~~~~  116 (204)
T d2c78a3          50 ARGITINTAHVEYETAKRHYSHVDCPGH-------------ADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLAR  116 (204)
T ss_dssp             HHTCCCSCEEEEEECSSCEEEEEECCCS-------------GGGHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHH
T ss_pred             cCCeEEEeeEEEEEeCCeEEEEEeCCCc-------------hhhHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHH
Confidence            3488876665433   667999999999             788999999999999999999999999999999999999


Q ss_pred             HhCCc-eEEEEeccCCCCcHH-HHHHHHHHHHHHHhcCC--CCCCeEEeecCC
Q 031293           94 RSQTK-YQVVLTKTDTVFPID-VARRAMQIEESLKANNS--LVQPVMMVSSKS  142 (162)
Q Consensus        94 ~~~~~-~ivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~--~~~~i~~~Sa~~  142 (162)
                      ..++| +++++||+|+++..+ ..+..+.+++.+...+.  ...++++.|+..
T Consensus       117 ~~gi~~iiv~iNK~D~~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~i~~sa~~  169 (204)
T d2c78a3         117 QVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALL  169 (204)
T ss_dssp             HTTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHH
T ss_pred             HcCCCeEEEEEEecccCCCHHHHHHHHHHHHHHHHhcCCCcccceeeeeechh
Confidence            99987 677899999986443 45556677776665432  346788888753

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=99.78  E-value=9.8e-19  Score=118.57  Aligned_cols=105  Identities=14%  Similarity=0.155  Sum_probs=87.6

Q ss_pred             CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCc-eEEEEeccCC
Q 031293           30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDT  108 (162)
Q Consensus        30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~-~ivv~nK~Dl  108 (162)
                      ++++.++|||||             ..++.+++++...+|++++|+|+.+++..++.+++..+...++| +++++||+|+
T Consensus        88 ~~~~~iiD~PGH-------------~dfv~~~~~g~~~aD~ailVvda~~G~~~Qt~e~~~~~~~~gv~~iiv~vNK~D~  154 (222)
T d1zunb3          88 KRKFIIADTPGH-------------EQYTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMDL  154 (222)
T ss_dssp             SEEEEEEECCCS-------------GGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECTTT
T ss_pred             ceEEEEEeccch-------------hhhhhhhccccccCceEEEEeccccCcccchHHHHHHHHHcCCCEEEEEEEcccc
Confidence            557999999999             88899999999999999999999999999999999999999977 7999999999


Q ss_pred             CC--cHHHHHHHHHHHHHHHhcCC--CCCCeEEeecCCCCCHH
Q 031293          109 VF--PIDVARRAMQIEESLKANNS--LVQPVMMVSSKSGAGIR  147 (162)
Q Consensus       109 ~~--~~~~~~~~~~~~~~~~~~~~--~~~~i~~~Sa~~~~g~~  147 (162)
                      ++  +.......+.+...+...+.  ...+++|+||++|.|+.
T Consensus       155 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~IPiSA~~G~ni~  197 (222)
T d1zunb3         155 NGFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVV  197 (222)
T ss_dssp             TTSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTS
T ss_pred             ccccceehhhhHHHHhhhhHhhccCCCceEEEEEEcccCccCC
Confidence            85  33445555666666665543  23467999999999884

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.77  E-value=3.6e-19  Score=121.42  Aligned_cols=115  Identities=22%  Similarity=0.325  Sum_probs=86.0

Q ss_pred             CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCCC
Q 031293           31 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF  110 (162)
Q Consensus        31 ~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~  110 (162)
                      .++.++|||||             ..+......+...+|++++|+||.+++...+.+++..+...++|+++|+||+|+++
T Consensus        70 ~~~~~iDtPGh-------------~~f~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iivlNK~D~~~  136 (227)
T d1g7sa4          70 PGLFFIDTPGH-------------EAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRIH  136 (227)
T ss_dssp             CEEEEECCCTT-------------SCCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCCEEEEEECGGGST
T ss_pred             cccccccccce-------------ecccccchhcccccceEEEEEecccCcccchhHHHHHhhcCCCeEEEEEECccCCC
Confidence            46999999999             55566666777889999999999999999999999999999999999999999864


Q ss_pred             cHHH------------------HHHHHHHH---HHHHhc------------CCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293          111 PIDV------------------ARRAMQIE---ESLKAN------------NSLVQPVMMVSSKSGAGIRSLRTVLSKIA  157 (162)
Q Consensus       111 ~~~~------------------~~~~~~~~---~~~~~~------------~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~  157 (162)
                      ....                  ......+.   ..+...            +....+++++||.+|.|+++|++.|.+..
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~pvSa~~G~gid~Ll~~l~~l~  216 (227)
T d1g7sa4         137 GWRVHEGRPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLA  216 (227)
T ss_dssp             TCCCCTTCCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             chhhhhhHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccCCCeEEEeeCCCCCCHHHHHHHHHHHH
Confidence            2210                  00111111   111111            11234799999999999999999998766


Q ss_pred             h
Q 031293          158 R  158 (162)
Q Consensus       158 ~  158 (162)
                      +
T Consensus       217 ~  217 (227)
T d1g7sa4         217 Q  217 (227)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.77  E-value=3.5e-19  Score=115.04  Aligned_cols=141  Identities=19%  Similarity=0.265  Sum_probs=97.2

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEE--Ee-CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFF--KL-GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT   77 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~--~~-~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~   77 (162)
                      |+|+|+|+ ..+.++..||+|+.....  .. +..+.++||||+.........    ...+..++.....+|++++|+|+
T Consensus        16 Lin~l~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~----~~~~~~~~~~~~~ad~ii~v~d~   90 (160)
T d1xzpa2          16 LLNRLLNE-DRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVE----RLGIERTLQEIEKADIVLFVLDA   90 (160)
T ss_dssp             HHHHHHHH-TBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCC----CCCHHHHHHHHHHCSEEEEEEET
T ss_pred             HHHHHhCC-CceeeeccccccccceeEEEEeCCeeEEeccccccccCCccHHH----HHHHHHHHHHHHhCCEEEEEEeC
Confidence            68999998 578899999998755433  22 456889999997443211100    01123344444566999999999


Q ss_pred             CCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHh
Q 031293           78 KWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKI  156 (162)
Q Consensus        78 ~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~  156 (162)
                      +.+....+..+...+  ...++++++||+|+.++...++    +...+.    ...+++++||++|.|+++|+++|.+.
T Consensus        91 ~~~~~~~~~~~~~~~--~~~~~i~~~~k~d~~~~~~~~~----~~~~~~----~~~~~~~vSA~~g~gi~~L~~~I~ke  159 (160)
T d1xzpa2          91 SSPLDEEDRKILERI--KNKRYLVVINKVDVVEKINEEE----IKNKLG----TDRHMVKISALKGEGLEKLEESIYRE  159 (160)
T ss_dssp             TSCCCHHHHHHHHHH--TTSSEEEEEEECSSCCCCCHHH----HHHHHT----CSTTEEEEEGGGTCCHHHHHHHHHHH
T ss_pred             CCCcchhhhhhhhhc--ccccceeeeeeccccchhhhHH----HHHHhC----CCCcEEEEECCCCCCHHHHHHHHHhc
Confidence            988766555544433  3678999999999987654432    223332    22589999999999999999998764

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.76  E-value=4.8e-19  Score=114.49  Aligned_cols=138  Identities=20%  Similarity=0.209  Sum_probs=94.7

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT   77 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~   77 (162)
                      |+|+|+++ ..+.++..||+++.......   +..+.++|+||+.+.....  .   ...+..+......+|++++++|+
T Consensus        17 Lin~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~--~---~~~~~~~~~~~~~~d~~i~~~d~   90 (161)
T d2gj8a1          17 LLNALAGR-EAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEV--E---RIGIERAWQEIEQADRVLFMVDG   90 (161)
T ss_dssp             HHHHHHTS-CCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHH--H---HHHHHHHHHHHHTCSEEEEEEET
T ss_pred             HHHHHhCC-CceEeecccccccceEeeeeeccCceeeeccccccccccccc--h---hHHHHHHHHHHHhccccceeecc
Confidence            68999999 56778999999876554322   5569999999986542211  1   11223333334557999999999


Q ss_pred             CCCCCccHHHHH-HHHHHh--CCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHH
Q 031293           78 KWGVKPRDHELI-SLMERS--QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLS  154 (162)
Q Consensus        78 ~~~~~~~~~~~~-~~l~~~--~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~  154 (162)
                      ...........+ +.+...  ++|+++|+||+|+.++...          +..  ....+++++||++|.|+++|+++|.
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~iilv~NK~Dl~~~~~~----------~~~--~~~~~~~~iSAk~~~gi~~L~~~l~  158 (161)
T d2gj8a1          91 TTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLG----------MSE--VNGHALIRLSARTGEGVDVLRNHLK  158 (161)
T ss_dssp             TTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCCCCE----------EEE--ETTEEEEECCTTTCTTHHHHHHHHH
T ss_pred             ccccchhhhhhhhhhhhhcccccceeeccchhhhhhhHHH----------HHH--hCCCcEEEEECCCCCCHHHHHHHHH
Confidence            876655555543 333332  6899999999998643210          111  1235899999999999999999998


Q ss_pred             Hh
Q 031293          155 KI  156 (162)
Q Consensus       155 ~~  156 (162)
                      +.
T Consensus       159 ~~  160 (161)
T d2gj8a1         159 QS  160 (161)
T ss_dssp             HH
T ss_pred             hh
Confidence            75

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.72  E-value=2.9e-18  Score=113.26  Aligned_cols=143  Identities=17%  Similarity=0.147  Sum_probs=85.4

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEE--Ee--CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEee
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFF--KL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLID   76 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~--~~--~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid   76 (162)
                      |+|+|++. .. .+++.+++|+.....  ..  +..+.++||||+.......      ......++.....++.++++++
T Consensus        17 Lin~L~~~-~~-~~~~~~~~T~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~------~~~~~~~l~~~~~~~~i~~~v~   88 (185)
T d1lnza2          17 LLSVVSSA-KP-KIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQG------VGLGHQFLRHIERTRVIVHVID   88 (185)
T ss_dssp             HHHHSEEE-CC-EESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCT------TTTHHHHHHHHHHCCEEEEEEE
T ss_pred             HHHHHhCC-CC-ceecCCCceEeeeeceeEecCCcEEEEecCCCcccCchHH------HHHHHHHHHHHHHhhhhhheee
Confidence            68999998 33 466777777654432  22  4468999999973321110      1112233333344577777776


Q ss_pred             cCCCCCccHHH--HH-HHH-HH-----hCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHH
Q 031293           77 TKWGVKPRDHE--LI-SLM-ER-----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIR  147 (162)
Q Consensus        77 ~~~~~~~~~~~--~~-~~l-~~-----~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~  147 (162)
                      ...........  .. ... ..     .++|+++|+||+|+.+....   .+.+.+.+.    ...+++++||++|.|++
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~~~~~---~~~~~~~~~----~~~~v~~iSA~~g~Gi~  161 (185)
T d1lnza2          89 MSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAEN---LEAFKEKLT----DDYPVFPISAVTREGLR  161 (185)
T ss_dssp             SSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHH---HHHHHHHCC----SCCCBCCCSSCCSSTTH
T ss_pred             ecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHhHHHH---HHHHHHHhc----cCCcEEEEECCCCCCHH
Confidence            54322121111  11 111 11     25789999999999864422   223333222    23589999999999999


Q ss_pred             HHHHHHHHhhh
Q 031293          148 SLRTVLSKIAR  158 (162)
Q Consensus       148 ~l~~~i~~~~~  158 (162)
                      +|+++|.+.++
T Consensus       162 ~L~~~i~~~L~  172 (185)
T d1lnza2         162 ELLFEVANQLE  172 (185)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHhhh
Confidence            99999988774

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.72  E-value=1.7e-17  Score=113.61  Aligned_cols=120  Identities=17%  Similarity=0.226  Sum_probs=92.2

Q ss_pred             cCCCCcceEEEEE--Ee-CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCC-------CCcc
Q 031293           15 SDKPGLTQTINFF--KL-GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG-------VKPR   84 (162)
Q Consensus        15 ~~~~g~t~~~~~~--~~-~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~-------~~~~   84 (162)
                      +..+|.|.+....  .. +++++++|||||             .+|+.+++++...+|.+++|+||.++       ...+
T Consensus        65 Er~rGiTi~~~~~~~~~~~~~i~iiDtPGH-------------~df~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~Q  131 (239)
T d1f60a3          65 ERERGITIDIALWKFETPKYQVTVIDAPGH-------------RDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQ  131 (239)
T ss_dssp             HHHTTCCCSCSCEEEECSSEEEEEEECCCC-------------TTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSH
T ss_pred             hhcceeccccceeEeccCCEEEEEEECCCc-------------HHHHHHHHHHHHHhCEEEEEEECCCCccccccCchHh
Confidence            3456777654433  22 667999999999             89999999999999999999999875       4567


Q ss_pred             HHHHHHHHHHhCCc-eEEEEeccCCCC--cHHHHHHHHHHHHHHHhcCC--CCCCeEEeecCCCCCHH
Q 031293           85 DHELISLMERSQTK-YQVVLTKTDTVF--PIDVARRAMQIEESLKANNS--LVQPVMMVSSKSGAGIR  147 (162)
Q Consensus        85 ~~~~~~~l~~~~~~-~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~--~~~~i~~~Sa~~~~g~~  147 (162)
                      +.+++..+...++| +|+++||+|+++  +.......+.+...+...+.  ...+++++|+..|.|+-
T Consensus       132 T~eh~~~~~~~gv~~iiv~iNKmD~~~~d~~~~~~~~~el~~~l~~~~~~~~~i~~ipiSa~~G~ni~  199 (239)
T d1f60a3         132 TREHALLAFTLGVRQLIVAVNKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMI  199 (239)
T ss_dssp             HHHHHHHHHHTTCCEEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTT
T ss_pred             HHHHHHHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEEccCCCcce
Confidence            88888888888987 788999999874  33455666666666665432  24678999999998863

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=99.67  E-value=1.9e-15  Score=99.21  Aligned_cols=156  Identities=35%  Similarity=0.468  Sum_probs=95.5

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEeCCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCC
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG   80 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~   80 (162)
                      |+|+|++.+....++..++++...............++++.+.........................++.++.+.++..+
T Consensus        32 L~n~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (188)
T d1puia_          32 ALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHP  111 (188)
T ss_dssp             HHTTTCCC-------------CCEEEEEEETTEEEEECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSC
T ss_pred             HHHHHhCCCceEeecccccceeeccceecccccceeeeecccccchhhhhhhhhhhhhhhhhhhhhheeEEEEeeccccc
Confidence            68999998543344444444444444444333444444443222111111111222333344444556777888888888


Q ss_pred             CCccHHHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293           81 VKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  157 (162)
Q Consensus        81 ~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~  157 (162)
                      ......+.+..+.....++++++||+|+++........+.+++.+..... ..+++++||++|.|+++|+++|.+.+
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~v~~k~D~~~~~~~~~~~~~~~~~l~~~~~-~~~~i~vSA~~g~Gid~L~~~i~~~~  187 (188)
T d1puia_         112 LKDLDQQMIEWAVDSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNG-DVQVETFSSLKKQGVDKLRQKLDTWF  187 (188)
T ss_dssp             CCHHHHHHHHHHHHTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCS-CEEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHhhhccccccchhhhhhccCHHHHHHHHHHHHHHHHhhCC-CCcEEEEeCCCCCCHHHHHHHHHHHh
Confidence            87777778888888889999999999999887777777777776655432 35899999999999999999998654

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.66  E-value=5e-17  Score=112.89  Aligned_cols=82  Identities=18%  Similarity=0.267  Sum_probs=65.5

Q ss_pred             cCCCCcceEEE--EEEe-CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHH
Q 031293           15 SDKPGLTQTIN--FFKL-GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISL   91 (162)
Q Consensus        15 ~~~~g~t~~~~--~~~~-~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~   91 (162)
                      +...|.|....  .+.+ +.+++++|||||             ..|+.+...+++.+|.+++|+|+..++..++...++.
T Consensus        52 E~~r~~si~~~~~~~~~~~~~~n~iDtPG~-------------~dF~~e~~~~l~~~D~avlVvda~~Gv~~~T~~~w~~  118 (276)
T d2bv3a2          52 ERERGITITAAVTTCFWKDHRINIIDAPGH-------------VDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ  118 (276)
T ss_dssp             ---CCCCCCCSEEEEEETTEEEEEECCCSS-------------SSCSTTHHHHHHHCCEEEEEEETTTSSCHHHHHHHHH
T ss_pred             HHhcCCccccceeeeccCCeEEEEecCCch-------------hhhHHHHHHHHHhhhheEEeccccCCcchhHHHHHHH
Confidence            33455554333  3344 667999999999             5566677777778899999999999999999999999


Q ss_pred             HHHhCCceEEEEeccCCC
Q 031293           92 MERSQTKYQVVLTKTDTV  109 (162)
Q Consensus        92 l~~~~~~~ivv~nK~Dl~  109 (162)
                      +.+.++|.++++||+|..
T Consensus       119 a~~~~lP~i~fINKmDr~  136 (276)
T d2bv3a2         119 AEKYKVPRIAFANKMDKT  136 (276)
T ss_dssp             HHTTTCCEEEEEECTTST
T ss_pred             HHHcCCCEEEEEeccccc
Confidence            999999999999999985

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.66  E-value=3.2e-16  Score=114.65  Aligned_cols=149  Identities=14%  Similarity=0.149  Sum_probs=97.5

Q ss_pred             ChhcccCCCC---ceeccCCCCcceEEEEEEe--CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEe
Q 031293            1 MLNALTRQWG---VVRTSDKPGLTQTINFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLI   75 (162)
Q Consensus         1 lin~L~~~~~---~~~~~~~~g~t~~~~~~~~--~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vi   75 (162)
                      |+|+|+|...   .+.....+++|++...+..  +.++++|||||+|......      +.++.+.  ....+|+++++.
T Consensus        72 LiNaL~G~~~~~~~~~~~g~~~tT~~~~~~~~~~~~~~~l~DtPG~~~~~~~~------~~~~~~~--~~~~~d~~l~~~  143 (400)
T d1tq4a_          72 FINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPP------DTYLEKM--KFYEYDFFIIIS  143 (400)
T ss_dssp             HHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCH------HHHHHHT--TGGGCSEEEEEE
T ss_pred             HHHHHhCCCcCCCccCCCCCCCCceeeeeeeccCCCeEEEEeCCCcccccccH------HHHHHHh--hhhcceEEEEec
Confidence            6899998632   2334445668888777665  4469999999997754322      2222221  233456666655


Q ss_pred             ecCCCCCccHHHHHHHHHHhCCceEEEEeccCCCCc-------------HHHHHHHHHHHHHHHhcCCCCCCeEEeecCC
Q 031293           76 DTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP-------------IDVARRAMQIEESLKANNSLVQPVMMVSSKS  142 (162)
Q Consensus        76 d~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~-------------~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~  142 (162)
                      |  .+++..+.+++..+...++|+++|+||+|....             ...+...+.+.+.+...+....+++.+|+..
T Consensus       144 ~--~~~~~~d~~l~~~l~~~~k~~~~V~nK~D~~~~~~~~~~~~~~~~e~~l~~ir~~~~~~l~~~~~~~~~vflvS~~~  221 (400)
T d1tq4a_         144 A--TRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKN  221 (400)
T ss_dssp             S--SCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTC
T ss_pred             C--CCCCHHHHHHHHHHHHcCCCEEEEEeCcccccchhhhcccccccHHHHHHHHHHHHHHHHHHcCCCCCCEEEecCCc
Confidence            4  457788888999999999999999999996311             1123344444555555556667899999765


Q ss_pred             --CCCHHHHHHHHHHhhhh
Q 031293          143 --GAGIRSLRTVLSKIARF  159 (162)
Q Consensus       143 --~~g~~~l~~~i~~~~~~  159 (162)
                        ..|+++|.+.+.+.++.
T Consensus       222 ~~~~d~~~L~~~l~~~L~~  240 (400)
T d1tq4a_         222 VCHYDFPVLMDKLISDLPI  240 (400)
T ss_dssp             TTSTTHHHHHHHHHHHSCG
T ss_pred             ccccCHHHHHHHHHHHhHH
Confidence              46899999999887654

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.65  E-value=3.7e-16  Score=106.08  Aligned_cols=122  Identities=18%  Similarity=0.244  Sum_probs=82.2

Q ss_pred             ccCCCCcceEEEEEE--e-CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCC-------Cc
Q 031293           14 TSDKPGLTQTINFFK--L-GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV-------KP   83 (162)
Q Consensus        14 ~~~~~g~t~~~~~~~--~-~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~-------~~   83 (162)
                      .+..+|.|.......  . +..++++|||||             ..|+.++.++.+.+|++++|+|+.+++       ..
T Consensus        61 ~e~~rg~ti~~~~~~~~~~~~~i~iiDtPGH-------------~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~  127 (224)
T d1jnya3          61 EERERGVTINLTFMRFETKKYFFTIIDAPGH-------------RDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEG  127 (224)
T ss_dssp             HC-----------CEEECSSCEEEECCCSSS-------------TTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTC
T ss_pred             hhhcCCccccceEEEEecCCceeEEeeCCCc-------------HHHHHHHHHHHHhhceEEEEEecccCcccccccccc
Confidence            344566665444332  2 567999999999             889999999999999999999999873       45


Q ss_pred             cHHHHHHHHHHhCCc-eEEEEeccCCCC----cHHHHHHHHHHHHHHHhcC--CCCCCeEEeecCCCCCHHH
Q 031293           84 RDHELISLMERSQTK-YQVVLTKTDTVF----PIDVARRAMQIEESLKANN--SLVQPVMMVSSKSGAGIRS  148 (162)
Q Consensus        84 ~~~~~~~~l~~~~~~-~ivv~nK~Dl~~----~~~~~~~~~~~~~~~~~~~--~~~~~i~~~Sa~~~~g~~~  148 (162)
                      +..+++..+...+++ +|+++||+|+..    ....+.....+...+...+  ....+++++||..|.|+.+
T Consensus       128 qt~e~l~~~~~~~~~~iIv~iNK~D~~~~~~~~~~~~~v~~~i~~~~~~~~~~~~~i~~IPISA~~G~NV~~  199 (224)
T d1jnya3         128 QTREHIILAKTMGLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITH  199 (224)
T ss_dssp             HHHHHHHHHHHTTCTTCEEEEECGGGSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTB
T ss_pred             hhHHHHHHHHHhCCCceEEEEEcccCCCccccHHHHHHHHHHHHhHHHhcCCCcccCeEEEEEccCCCCccc
Confidence            666777777777765 888899999873    2233444445555544433  2345789999999998753

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.65  E-value=9.4e-17  Score=110.29  Aligned_cols=125  Identities=18%  Similarity=0.190  Sum_probs=73.8

Q ss_pred             ccCCCCcceEEEE--EEe-CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCC-------Cc
Q 031293           14 TSDKPGLTQTINF--FKL-GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV-------KP   83 (162)
Q Consensus        14 ~~~~~g~t~~~~~--~~~-~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~-------~~   83 (162)
                      ....+|.|.+...  +.. +.++.++|||||             ..++.+++++...+|++++|+|+.++.       ..
T Consensus        82 ~e~~rg~ti~~~~~~~~~~~~~i~~iDtPGH-------------~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~  148 (245)
T d1r5ba3          82 EEREKGKTVEVGRAYFETEHRRFSLLDAPGH-------------KGYVTNMINGASQADIGVLVISARRGEFEAGFERGG  148 (245)
T ss_dssp             ------------CCEEECSSEEEEECCCCC------------------------TTSCSEEEEEEECSTTHHHHTTSTTC
T ss_pred             cccccCccccccccccccccceeeeeccccc-------------ccchhhhhhhhhhhcceeeEEEcCCCccCCcccccc
Confidence            3444555544332  222 456999999999             889999999999999999999998764       44


Q ss_pred             cHHHHHHHHHHhCCc-eEEEEeccCCCC----cHHHHHHHHHHHHHHHhcC----CCCCCeEEeecCCCCCHHHHHH
Q 031293           84 RDHELISLMERSQTK-YQVVLTKTDTVF----PIDVARRAMQIEESLKANN----SLVQPVMMVSSKSGAGIRSLRT  151 (162)
Q Consensus        84 ~~~~~~~~l~~~~~~-~ivv~nK~Dl~~----~~~~~~~~~~~~~~~~~~~----~~~~~i~~~Sa~~~~g~~~l~~  151 (162)
                      +..+++..+...++| +++++||+|+..    +....+..+.+...+....    ....+++|+||++|.|+.++.+
T Consensus       149 QT~e~l~l~~~~~i~~iiv~iNKmD~~~~~~~e~~~~ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~~~~  225 (245)
T d1r5ba3         149 QTREHAVLARTQGINHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVD  225 (245)
T ss_dssp             CHHHHHHHHHHTTCSSEEEEEECTTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCC
T ss_pred             chHHHHHHHHHcCCCeEEEEEEcCCCCccchhHHHHHHHHHHHHHHHHHHhCcCcccCCEEEEeeccCCCCcccchh
Confidence            778888888888887 789999999863    2234444455554433321    1125799999999999987543

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=99.64  E-value=6.5e-16  Score=106.94  Aligned_cols=80  Identities=23%  Similarity=0.282  Sum_probs=68.0

Q ss_pred             CCCcceEEEE--EEe-CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHH
Q 031293           17 KPGLTQTINF--FKL-GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLME   93 (162)
Q Consensus        17 ~~g~t~~~~~--~~~-~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~   93 (162)
                      ..|.|.....  +.+ +.+++++|||||             ..|..+...+.+.+|.+++|+|+.+++..++.++++.+.
T Consensus        50 ~r~~ti~~~~~~~~~~~~~~n~iDtPGh-------------~dF~~e~~~al~~~D~avlvvda~~Gv~~~t~~~~~~~~  116 (267)
T d2dy1a2          50 LHRTTVRTGVAPLLFRGHRVFLLDAPGY-------------GDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAE  116 (267)
T ss_dssp             HTTSCCSCEEEEEEETTEEEEEEECCCS-------------GGGHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHH
T ss_pred             HhCCeEEeecccccccccceeEEccCch-------------hhhhhhhhhhhcccCceEEEeeccCCccchhHHHHHhhh
Confidence            3555544433  333 667999999999             778888888889999999999999999999999999999


Q ss_pred             HhCCceEEEEeccCCC
Q 031293           94 RSQTKYQVVLTKTDTV  109 (162)
Q Consensus        94 ~~~~~~ivv~nK~Dl~  109 (162)
                      +.++|.++++||+|..
T Consensus       117 ~~~~p~~i~iNk~D~~  132 (267)
T d2dy1a2         117 RLGLPRMVVVTKLDKG  132 (267)
T ss_dssp             HTTCCEEEEEECGGGC
T ss_pred             hccccccccccccccc
Confidence            9999999999999974

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=99.61  E-value=4.8e-16  Score=101.56  Aligned_cols=139  Identities=17%  Similarity=0.175  Sum_probs=84.5

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEeCCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCC
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG   80 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~   80 (162)
                      |+|+|.+. ....+.+..|.+.....+ -+..+.++|+||...          +......++.   .++++++++|+...
T Consensus        32 Li~~l~~~-~~~~~~~~~~~~~~~i~~-~~~~~~i~d~~g~~~----------~~~~~~~~~~---~~~~ii~v~d~~d~   96 (176)
T d1fzqa_          32 LLKQLASE-DISHITPTQGFNIKSVQS-QGFKLNVWDIGGQRK----------IRPYWRSYFE---NTDILIYVIDSADR   96 (176)
T ss_dssp             HHHHHCCS-CCEEEEEETTEEEEEEEE-TTEEEEEEECSSCGG----------GHHHHHHHHT---TCSEEEEEEETTCG
T ss_pred             HHHHHhcC-CCCcceeeeeeeEEEecc-CCeeEeEeecccccc----------chhHHHHHhh---ccceeEEeeccccc
Confidence            57888777 455566666654322111 144689999999822          1334444543   45999999998764


Q ss_pred             CCccHH-HHH-HHHH---HhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHH
Q 031293           81 VKPRDH-ELI-SLME---RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSK  155 (162)
Q Consensus        81 ~~~~~~-~~~-~~l~---~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~  155 (162)
                      .+-... ..+ ....   ..++|+++|+||+|+.+........+.+.  ......+..+++++||++|+|++++++||.+
T Consensus        97 ~s~~~~~~~~~~~~~~~~~~~~pillv~nK~Dl~~~~~~~~~~~~~~--~~~~~~~~~~~~~~SA~tg~gv~e~~~~l~~  174 (176)
T d1fzqa_          97 KRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLN--LHTIRDRVWQIQSCSALTGEGVQDGMNWVCK  174 (176)
T ss_dssp             GGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTT--GGGCCSSCEEEEECCTTTCTTHHHHHHHHHH
T ss_pred             cchhhhhhhhhhhhhhhccCCCeEEEEEEeccccccccHHHHHHHHH--HHHHHhcCCEEEEEeCCCCCCHHHHHHHHHh
Confidence            322211 112 2111   22689999999999986544332222221  1112223457899999999999999999986


Q ss_pred             h
Q 031293          156 I  156 (162)
Q Consensus       156 ~  156 (162)
                      .
T Consensus       175 ~  175 (176)
T d1fzqa_         175 N  175 (176)
T ss_dssp             T
T ss_pred             c
Confidence            4

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=99.60  E-value=3.3e-15  Score=96.56  Aligned_cols=139  Identities=17%  Similarity=0.122  Sum_probs=82.0

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEe-CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCC
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKL-GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW   79 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~-~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~   79 (162)
                      |+|+|.+. ....++++.|....  .... +..+.++||||.             ..+..........++.+++++|+..
T Consensus        18 Li~~l~~~-~~~~~~~t~~~~~~--~~~~~~~~~~~~D~~G~-------------~~~~~~~~~~~~~~~~~i~v~d~~d   81 (165)
T d1ksha_          18 ILKKFNGE-DVDTISPTLGFNIK--TLEHRGFKLNIWDVGGQ-------------KSLRSYWRNYFESTDGLIWVVDSAD   81 (165)
T ss_dssp             HHHHHTTC-CCSSCCCCSSEEEE--EEEETTEEEEEEEECCS-------------HHHHTTGGGGCTTCSEEEEEEETTC
T ss_pred             HHHHHcCC-CCCcccceEeeeee--eccccccceeeeecCcc-------------hhhhhHHHhhhhhhhcceeeeeccc
Confidence            57788776 33333333332221  1222 446999999998             3332222233455699999999865


Q ss_pred             CCCccH-HHHH-HHHH---HhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHH
Q 031293           80 GVKPRD-HELI-SLME---RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLS  154 (162)
Q Consensus        80 ~~~~~~-~~~~-~~l~---~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~  154 (162)
                      ...... ...+ ..+.   ..+.|+++|+||+|+.+.....+....+.  +........+++++||++|+|+++++++|.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~--~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~  159 (165)
T d1ksha_          82 RQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALE--LDSIRSHHWRIQGCSAVTGEDLLPGIDWLL  159 (165)
T ss_dssp             GGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTT--GGGCCSSCEEEEECCTTTCTTHHHHHHHHH
T ss_pred             chhHHHHHHhhhhhhhhcccCCCceEEEEeccccccccCHHHHHHHHH--hhhhhcCCCEEEEEECCCCCCHHHHHHHHH
Confidence            322211 1222 2222   23689999999999975443332222211  122222345789999999999999999998


Q ss_pred             Hhh
Q 031293          155 KIA  157 (162)
Q Consensus       155 ~~~  157 (162)
                      +.+
T Consensus       160 ~~i  162 (165)
T d1ksha_         160 DDI  162 (165)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            765

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=99.59  E-value=1.6e-15  Score=99.65  Aligned_cols=142  Identities=16%  Similarity=0.178  Sum_probs=81.7

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEe-CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCC
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKL-GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW   79 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~-~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~   79 (162)
                      |+|+|.+. ......++.|.....  ... +.++.++|+||....          ......+   ...++++++++|+.+
T Consensus        33 Li~~l~~~-~~~~~~~t~~~~~~~--~~~~~~~~~i~D~~g~~~~----------~~~~~~~---~~~~~~ii~v~d~~d   96 (182)
T d1moza_          33 ILYRLQIG-EVVTTKPTIGFNVET--LSYKNLKLNVWDLGGQTSI----------RPYWRCY---YADTAAVIFVVDSTD   96 (182)
T ss_dssp             HHHHTCCS-EEEEECSSTTCCEEE--EEETTEEEEEEEEC----C----------CTTGGGT---TTTEEEEEEEEETTC
T ss_pred             HHHHHhcC-CCCccccccceEEEE--EeeCCEEEEEEeccccccc----------chhHHhh---hccceeEEEEeeecc
Confidence            45666555 334444444433221  122 345889999998221          1122222   345699999999876


Q ss_pred             CCCccH-HHHH-HHHHH---hCCceEEEEeccCCCCcHHHHHHHHHHHHHHH--hcCCCCCCeEEeecCCCCCHHHHHHH
Q 031293           80 GVKPRD-HELI-SLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLK--ANNSLVQPVMMVSSKSGAGIRSLRTV  152 (162)
Q Consensus        80 ~~~~~~-~~~~-~~l~~---~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~Sa~~~~g~~~l~~~  152 (162)
                      ..+... ...+ ..+..   .+.|+++|.||+|+.+.....+    +.+.+.  ......++++++||++|+|+++++++
T Consensus        97 ~~s~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~~~~~~~----i~~~~~~~~~~~~~~~~~e~SA~~g~gv~e~~~~  172 (182)
T d1moza_          97 KDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASE----VSKELNLVELKDRSWSIVASSAIKGEGITEGLDW  172 (182)
T ss_dssp             TTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHH----HHHHTTTTTCCSSCEEEEEEBGGGTBTHHHHHHH
T ss_pred             cccchhHHHHHHHHHHhhccCCcceEEEEEeeccccccCHHH----HHHHHHHHHHhhCCCEEEEEECCCCCCHHHHHHH
Confidence            543322 1222 22221   2589999999999975322222    222222  11223357899999999999999999


Q ss_pred             HHHhhhhhcC
Q 031293          153 LSKIARFAKV  162 (162)
Q Consensus       153 i~~~~~~~k~  162 (162)
                      |.+.+...++
T Consensus       173 l~~~i~~~~l  182 (182)
T d1moza_         173 LIDVIKEEQL  182 (182)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHcCC
Confidence            9998876553

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.58  E-value=3.6e-15  Score=96.87  Aligned_cols=139  Identities=12%  Similarity=0.047  Sum_probs=81.9

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEeCC---ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKLGT---KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT   77 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~~~---~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~   77 (162)
                      |+|+|.+........+.+|.+..........   ++.+|||||..          .+..+...+   .+.+|++++|.|+
T Consensus        21 Li~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e----------~~~~~~~~~---~~~ad~~ilv~d~   87 (169)
T d3raba_          21 FLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQE----------RYRTITTAY---YRGAMGFILMYDI   87 (169)
T ss_dssp             HHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSG----------GGHHHHHTT---TTTCCEEEEEEET
T ss_pred             HHHHHHcCCCCcccccccccceeeEEEEeecceEEEEEEECCCch----------hhHHHHHHH---HhcCCEEEEEEEC
Confidence            4667765522233344444444443333332   58899999982          123333333   3456999999998


Q ss_pred             CCCCCccH-HHHHHHHHH---hCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHH
Q 031293           78 KWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVL  153 (162)
Q Consensus        78 ~~~~~~~~-~~~~~~l~~---~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i  153 (162)
                      ..+-+-.. ..+......   ...|+++|.||+|+........  +..++.....+   .+++++||++|.|+++++++|
T Consensus        88 ~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~v~~--~~~~~~~~~~~---~~~~e~Sak~g~gv~e~f~~l  162 (169)
T d3raba_          88 TNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSS--ERGRQLADHLG---FEFFEASAKDNINVKQTFERL  162 (169)
T ss_dssp             TCHHHHHTHHHHHHHHHHHCCSCCEEEEEEECTTCGGGCCSCH--HHHHHHHHHHT---CEEEECBTTTTBSHHHHHHHH
T ss_pred             ccchhhhhhhhhhhhhhcccCCcceEEEEEeecccccccccch--hhhHHHHHHcC---CEEEEecCCCCcCHHHHHHHH
Confidence            76321111 122233322   2577899999999864332211  12222333333   489999999999999999999


Q ss_pred             HHhh
Q 031293          154 SKIA  157 (162)
Q Consensus       154 ~~~~  157 (162)
                      .+.+
T Consensus       163 ~~~i  166 (169)
T d3raba_         163 VDVI  166 (169)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8765

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.57  E-value=2.2e-14  Score=93.64  Aligned_cols=146  Identities=16%  Similarity=0.197  Sum_probs=91.9

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEE--EEe-CCceEEEcCCCCcccccCHHHHHHHHHHHHH-HHhcCcccceeEEEee
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINF--FKL-GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE-YVSTRVSLKRVCLLID   76 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~--~~~-~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~vi~vid   76 (162)
                      |||+|+++ ..+.++..+++++....  ... ...+..+|+||.....    . ......... .......+++++++.|
T Consensus        21 Lin~L~~~-~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~l~~~d   94 (179)
T d1egaa1          21 LLNKLLGQ-KISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEE----K-RAINRLMNKAASSSIGDVELVIFVVE   94 (179)
T ss_dssp             HHHHHHTC-SEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHH----H-HHHHHHHTCCTTSCCCCEEEEEEEEE
T ss_pred             HHHHHhCC-CceeeccCCCceEEEEEeeeecCCceeEeecCCCceecc----h-hhhhhhhhhccccchhhcceeEEEEe
Confidence            68999999 57888888777764433  222 3346678888763210    0 000111111 1112245688888888


Q ss_pred             cCCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcHH-HHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHH
Q 031293           77 TKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPID-VARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSK  155 (162)
Q Consensus        77 ~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~  155 (162)
                      +... ......+...+.....|.++|+||+|...... ...   ..+......  ...+++++||++|.|+++|+++|.+
T Consensus        95 ~~~~-~~~~~~~~~~l~~~~~~~i~v~~k~d~~~~~~~~~~---~~~~~~~~~--~~~~~~~vSA~~g~gi~~L~~~i~~  168 (179)
T d1egaa1          95 GTRW-TPDDEMVLNKLREGKAPVILAVNKVDNVQEKADLLP---HLQFLASQM--NFLDIVPISAETGLNVDTIAAIVRK  168 (179)
T ss_dssp             TTCC-CHHHHHHHHHHHSSSSCEEEEEESTTTCCCHHHHHH---HHHHHHTTS--CCSEEEECCTTTTTTHHHHHHHHHT
T ss_pred             cCcc-chhHHHHHHHhhhccCceeeeeeeeeccchhhhhhh---Hhhhhhhhc--CCCCEEEEeCcCCCCHHHHHHHHHH
Confidence            7753 34444555666667789999999999886543 222   222222222  3358999999999999999999998


Q ss_pred             hhh
Q 031293          156 IAR  158 (162)
Q Consensus       156 ~~~  158 (162)
                      .++
T Consensus       169 ~lp  171 (179)
T d1egaa1         169 HLP  171 (179)
T ss_dssp             TCC
T ss_pred             hCC
Confidence            775

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=99.56  E-value=8.1e-15  Score=95.47  Aligned_cols=112  Identities=14%  Similarity=0.074  Sum_probs=69.4

Q ss_pred             CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCc--cHHHHHHHHHH---hCCceEEEEec
Q 031293           31 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKP--RDHELISLMER---SQTKYQVVLTK  105 (162)
Q Consensus        31 ~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~--~~~~~~~~l~~---~~~~~ivv~nK  105 (162)
                      ..+.++|+||....          ....+.   ....++++++++|+...-+-  ...++...+..   ...|++++.||
T Consensus        56 ~~~~i~D~~g~~~~----------~~~~~~---~~~~~~~ii~v~D~s~~~~~~~~~~~l~~~~~~~~~~~~piiiv~NK  122 (173)
T d1e0sa_          56 VKFNVWDVGGQDKI----------RPLWRH---YYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANK  122 (173)
T ss_dssp             EEEEEEEESCCGGG----------HHHHGG---GTTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEEC
T ss_pred             eeeEEecCCCcchh----------hhHHHh---hhcccceEEEEEecccchhHHHHHHHHHHHhhhcccccceeeeeeec
Confidence            35889999998322          223333   34556999999998753211  11222233321   25899999999


Q ss_pred             cCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293          106 TDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  157 (162)
Q Consensus       106 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~  157 (162)
                      +|+.+.....+..+.+.  +.......++++++||++|+|+++++++|.+.+
T Consensus       123 ~Dl~~~~~~~~i~~~~~--~~~~~~~~~~~~e~SA~tg~gv~e~~~~l~~~~  172 (173)
T d1e0sa_         123 QDLPDAMKPHEIQEKLG--LTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNY  172 (173)
T ss_dssp             TTSTTCCCHHHHHHHTT--GGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHC
T ss_pred             ccccccccHHHHHHHHH--HHHHHhCCCEEEEeeCCCCcCHHHHHHHHHHhc
Confidence            99975332222211111  122222335789999999999999999998764

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=5.7e-15  Score=95.83  Aligned_cols=109  Identities=14%  Similarity=0.026  Sum_probs=66.3

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHH-HHHHHHHH----hCCceEEEEecc
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDH-ELISLMER----SQTKYQVVLTKT  106 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~-~~~~~l~~----~~~~~ivv~nK~  106 (162)
                      .+.++||||.          +.+..+...+++.   +|++++|.|...+.+-... .++..+..    .++|+++|.||+
T Consensus        49 ~l~i~D~~g~----------e~~~~~~~~~~~~---~d~~ilv~d~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~  115 (168)
T d2gjsa1          49 SLMVYDIWEQ----------DGGRWLPGHCMAM---GDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKS  115 (168)
T ss_dssp             EEEEEECC-----------------CHHHHHTS---CSEEEEEEETTCHHHHHHHHHHHHHHHHHCC--CCCEEEEEECT
T ss_pred             ceeeeecccc----------cccceecccchhh---hhhhceeccccccccccccccccchhhcccccccceEEEeeccc
Confidence            4789999998          2224445555543   5999999998754222221 23333322    247999999999


Q ss_pred             CCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293          107 DTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR  158 (162)
Q Consensus       107 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~  158 (162)
                      |+.+...+..  ...++.....+   .+++++||++|.|+++++..|.+.+.
T Consensus       116 Dl~~~~~v~~--~~~~~~~~~~~---~~~~e~Sak~~~~v~~~f~~l~~~i~  162 (168)
T d2gjsa1         116 DLVRSREVSV--DEGRACAVVFD---CKFIETSAALHHNVQALFEGVVRQIR  162 (168)
T ss_dssp             TCGGGCCSCH--HHHHHHHHHHT---SEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred             chhhhcchhH--HHHHHHHHhcC---CEEEEEeCCCCcCHHHHHHHHHHHHH
Confidence            9865432211  12223333333   48899999999999999999987654

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=7.7e-15  Score=95.39  Aligned_cols=136  Identities=17%  Similarity=0.157  Sum_probs=78.2

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEE--EEeCC---ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEe
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINF--FKLGT---KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLI   75 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~--~~~~~---~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vi   75 (162)
                      |+|+|.+..  ......|+.+.+...  ...+.   ++.++||||..          .+..+...+   .+.++++++|.
T Consensus        21 Li~~l~~~~--f~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e----------~~~~~~~~~---~~~~~~~i~v~   85 (171)
T d2ew1a1          21 LVRRFTQGL--FPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQE----------RFRSITQSY---YRSANALILTY   85 (171)
T ss_dssp             HHHHHHHSS--CCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSG----------GGHHHHGGG---STTCSEEEEEE
T ss_pred             HHHHHHhCC--CCCcccccccceEEEEEEEECCEEEEEEEEECCCch----------hhHHHHHHH---HhccceEEEee
Confidence            456666542  222334444444333  23322   47899999981          223334444   34569999999


Q ss_pred             ecCCCCCcc-HHHHHHHHHH---hCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHH
Q 031293           76 DTKWGVKPR-DHELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRT  151 (162)
Q Consensus        76 d~~~~~~~~-~~~~~~~l~~---~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~  151 (162)
                      |.....+-. ..+++..+..   ...|+++|.||+|+.+......  +..++.....+   .+++++||++|.|+++++.
T Consensus        86 d~~~~~s~~~~~~~~~~i~~~~~~~~~~ilvgnK~D~~~~~~v~~--~~~~~~~~~~~---~~~~~~SAktg~gV~e~f~  160 (171)
T d2ew1a1          86 DITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQ--QRAEEFSEAQD---MYYLETSAKESDNVEKLFL  160 (171)
T ss_dssp             ETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCH--HHHHHHHHHHT---CCEEECCTTTCTTHHHHHH
T ss_pred             ecccchhhhhhhhhhhhhcccccccccEEEEEeecccccccchhh--hHHHHHHHhCC---CEEEEEccCCCCCHHHHHH
Confidence            976532111 1223333322   2578999999999864332211  12233333333   4899999999999999988


Q ss_pred             HHHHh
Q 031293          152 VLSKI  156 (162)
Q Consensus       152 ~i~~~  156 (162)
                      .|...
T Consensus       161 ~l~~~  165 (171)
T d2ew1a1         161 DLACR  165 (171)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            77643

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=99.53  E-value=6.6e-15  Score=95.09  Aligned_cols=113  Identities=15%  Similarity=0.143  Sum_probs=69.4

Q ss_pred             CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCcc-HHHHHH-HHHH---hCCceEEEEe
Q 031293           30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPR-DHELIS-LMER---SQTKYQVVLT  104 (162)
Q Consensus        30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~-~~~~~~-~l~~---~~~~~ivv~n  104 (162)
                      +..+.++|+||+          +.+......++   ..++++++++|+....+-. ....+. .+..   .++|+++|+|
T Consensus        46 ~~~~~i~D~~G~----------~~~~~~~~~~~---~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi~lv~n  112 (164)
T d1zd9a1          46 NVTIKLWDIGGQ----------PRFRSMWERYC---RGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGN  112 (164)
T ss_dssp             TEEEEEEEECCS----------HHHHTTHHHHH---TTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEE
T ss_pred             eEEEEEeecccc----------ccccccccccc---cccchhhcccccccccccchhhhhhhhhhhhhcccCCcEEEEEe
Confidence            345889999998          22222333443   3459999999987532111 112222 2222   2689999999


Q ss_pred             ccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293          105 KTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  157 (162)
Q Consensus       105 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~  157 (162)
                      |.|+.+.....+..+...  .........+++++||++|.|+++++++|.+.+
T Consensus       113 K~Dl~~~~~~~~i~~~~~--~~~~~~~~~~~~e~Sa~~g~gv~e~~~~l~~~~  163 (164)
T d1zd9a1         113 KRDLPGALDEKELIEKMN--LSAIQDREICCYSISCKEKDNIDITLQWLIQHS  163 (164)
T ss_dssp             CTTSTTCCCHHHHHHHTT--GGGCCSSCEEEEECCTTTCTTHHHHHHHHHHTC
T ss_pred             ccccchhhhHHHHHHHHH--HHHHHhCCCEEEEEeCcCCcCHHHHHHHHHHcc
Confidence            999875433332222221  111122345789999999999999999998754

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.53  E-value=3.1e-15  Score=96.66  Aligned_cols=139  Identities=13%  Similarity=0.049  Sum_probs=81.2

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEeC---CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKLG---TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT   77 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~~---~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~   77 (162)
                      |+|+|++........++.+.+........+   ..+.++||||....          ......++   +.++++++++|.
T Consensus        18 Li~rl~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~----------~~~~~~~~---~~~~~~i~v~d~   84 (164)
T d1z2aa1          18 MIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEF----------DAITKAYY---RGAQACVLVFST   84 (164)
T ss_dssp             HHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGT----------TCCCHHHH---TTCCEEEEEEET
T ss_pred             HHHHHHhCCCCcccccccccccceeeeeecCceeeeeeeccCCccch----------hhhhhhhh---ccCceEEEEEec
Confidence            467776542223233344443333333332   24889999998432          11223333   345999999998


Q ss_pred             CCCCCccH-HHHHHHHHH--hCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHH
Q 031293           78 KWGVKPRD-HELISLMER--SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLS  154 (162)
Q Consensus        78 ~~~~~~~~-~~~~~~l~~--~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~  154 (162)
                      ..+.+-.. ..++..+.+  .++|+++|.||+|+.++..+..  +..++.....+   .+++++||++|.|++++++.|.
T Consensus        85 ~~~~s~~~~~~~~~~i~~~~~~~~iilVgnK~Dl~~~~~v~~--~~~~~~~~~~~---~~~~e~Sak~g~~v~e~f~~l~  159 (164)
T d1z2aa1          85 TDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSCIKN--EEAEGLAKRLK---LRFYRTSVKEDLNVSEVFKYLA  159 (164)
T ss_dssp             TCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGGCSSCH--HHHHHHHHHHT---CEEEECBTTTTBSSHHHHHHHH
T ss_pred             cchhhhhhcccccccccccCCCceEEEeeccCCcccceeeee--hhhHHHHHHcC---CEEEEeccCCCcCHHHHHHHHH
Confidence            76322211 123344433  3689999999999875432211  12233333333   4899999999999999999987


Q ss_pred             Hhh
Q 031293          155 KIA  157 (162)
Q Consensus       155 ~~~  157 (162)
                      +.+
T Consensus       160 ~~~  162 (164)
T d1z2aa1         160 EKH  162 (164)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            654

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.53  E-value=1.7e-14  Score=94.04  Aligned_cols=141  Identities=11%  Similarity=0.080  Sum_probs=76.3

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEe-C---CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEee
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKL-G---TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLID   76 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~-~---~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid   76 (162)
                      |+|+|++........+.++.+........ +   ..+.++||||.             +..........+.+++++++.|
T Consensus        18 Li~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~-------------~~~~~~~~~~~~~~~~~ilv~d   84 (175)
T d1ky3a_          18 LMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQ-------------ERFQSLGVAFYRGADCCVLVYD   84 (175)
T ss_dssp             HHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC-----------------------CCSTTCCEEEEEEE
T ss_pred             HHHHHHcCCCCCccCcccccceeeeeeeecCcccccceeeccCCc-------------hhhhhHHHHHhhccceEEEEee
Confidence            46777655222233344444443333332 2   13789999998             2222222233456799999999


Q ss_pred             cCCCCCccH-HHHHHHHHH-------hCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHH
Q 031293           77 TKWGVKPRD-HELISLMER-------SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRS  148 (162)
Q Consensus        77 ~~~~~~~~~-~~~~~~l~~-------~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~  148 (162)
                      .....+-.. ..++..+..       .++|+++|.||+|+.+...... .+..++.....+.  .+++++||++|.|+++
T Consensus        85 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~~~~v~-~~~~~~~~~~~~~--~~~~e~SA~~g~gv~e  161 (175)
T d1ky3a_          85 VTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVS-EKSAQELAKSLGD--IPLFLTSAKNAINVDT  161 (175)
T ss_dssp             TTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSC-HHHHHHHHHHTTS--CCEEEEBTTTTBSHHH
T ss_pred             cccccccchhhhcchhhhhhhhhcccccCcEEEEecccchhhhhcchh-HHHHHHHHHHcCC--CeEEEEeCCCCcCHHH
Confidence            876432111 223333321       2579999999999875322100 0122333333332  5899999999999999


Q ss_pred             HHHHHHHhh
Q 031293          149 LRTVLSKIA  157 (162)
Q Consensus       149 l~~~i~~~~  157 (162)
                      ++.+|.+.+
T Consensus       162 ~f~~l~~~~  170 (175)
T d1ky3a_         162 AFEEIARSA  170 (175)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999987643

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=6.3e-14  Score=90.56  Aligned_cols=109  Identities=17%  Similarity=0.161  Sum_probs=69.6

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHHHHHH----hCCceEEEEecc
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKT  106 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~~l~~----~~~~~ivv~nK~  106 (162)
                      .+.++|+||....          ......++.   .+++++++.|.....+-.. ..++..+..    .++|+++|.||+
T Consensus        52 ~l~~~d~~~~~~~----------~~~~~~~~~---~~~~~iiv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~  118 (166)
T d1ctqa_          52 LLDILDTAGQEEY----------SAMRDQYMR---TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKC  118 (166)
T ss_dssp             EEEEEEECCCGGG----------HHHHHHHHH---HCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSSCCEEEEEECT
T ss_pred             eeeeeeccCcccc----------ccchhhhhh---cccccceeecccccccHHHHHHHHHHHHHhcCCCCCeEEEEeccc
Confidence            4789999998322          233333433   3489999999875321111 223333332    258999999999


Q ss_pred             CCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhhh
Q 031293          107 DTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARF  159 (162)
Q Consensus       107 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~~  159 (162)
                      |+..+....+   ..++.....+   .+++++||++|.|+++++..|.+.+..
T Consensus       119 Dl~~~~~~~~---~~~~~~~~~~---~~~~e~Sak~g~gi~e~f~~i~~~i~~  165 (166)
T d1ctqa_         119 DLAARTVESR---QAQDLARSYG---IPYIETSAKTRQGVEDAFYTLVREIRQ  165 (166)
T ss_dssp             TCSCCCSCHH---HHHHHHHHHT---CCEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             ccccccccHH---HHHHHHHHhC---CeEEEEcCCCCcCHHHHHHHHHHHHHh
Confidence            9875432222   2223333333   489999999999999999999877643

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=4e-14  Score=92.16  Aligned_cols=108  Identities=12%  Similarity=0.069  Sum_probs=67.8

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHH-HHHHHHHH---hCCceEEEEeccC
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDH-ELISLMER---SQTKYQVVLTKTD  107 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~-~~~~~l~~---~~~~~ivv~nK~D  107 (162)
                      .+.++||||...          +....+.+   .+.+++++++.|.....+-... .++..+..   .++|+++|.||+|
T Consensus        55 ~~~i~D~~G~~~----------~~~~~~~~---~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~D  121 (174)
T d2bmea1          55 KLQIWDTAGQER----------FRSVTRSY---YRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKD  121 (174)
T ss_dssp             EEEEEEECCSGG----------GHHHHHTT---STTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGG
T ss_pred             eEEEEECCCchh----------hhhhHHHH---hhhCCEEEEEEecccchhHHHHhhhhcccccccCCceEEEEEEeccc
Confidence            488999999821          13333333   4567999999998763211111 12222222   2589999999999


Q ss_pred             CCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293          108 TVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  157 (162)
Q Consensus       108 l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~  157 (162)
                      +........  +...+.....+   .+++.+||++|.|+++++.++.+.+
T Consensus       122 ~~~~~~~~~--~~~~~~~~~~~---~~~~e~Sak~~~gi~e~f~~l~~~i  166 (174)
T d2bmea1         122 LDADREVTF--LEASRFAQENE---LMFLETSALTGENVEEAFVQCARKI  166 (174)
T ss_dssp             GGGGCCSCH--HHHHHHHHHTT---CEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             ccchhchhh--hHHHHHHHhCC---CEEEEeeCCCCcCHHHHHHHHHHHH
Confidence            853332211  12223333332   5899999999999999999887654

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=4e-14  Score=91.26  Aligned_cols=109  Identities=19%  Similarity=0.137  Sum_probs=69.7

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHHHHH---HhCCceEEEEeccC
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLME---RSQTKYQVVLTKTD  107 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~~l~---~~~~~~ivv~nK~D  107 (162)
                      ++.++|+||+...          ......++.   .+++++++.|...+.+-.. ..++..+.   ..+.|+++|.||+|
T Consensus        50 ~~~i~d~~g~~~~----------~~~~~~~~~---~~~~~ilv~d~~~~~s~~~i~~~~~~~~~~~~~~~~iilvgnK~D  116 (164)
T d1yzqa1          50 RLQLWDTAGQERF----------RSLIPSYIR---DSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTD  116 (164)
T ss_dssp             EEEEEEECCSGGG----------GGGHHHHHT---TCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTT
T ss_pred             eeeecccCCcchh----------ccchHHHhh---ccceEEEeeccccccchhhhHhhHHHHHHhcCCCceEEEEecccc
Confidence            4789999998322          233344443   3499999999876432211 12222222   13688999999999


Q ss_pred             CCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293          108 TVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR  158 (162)
Q Consensus       108 l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~  158 (162)
                      +.+.....  .+...+.....+   .+++++||++|.|+++++++|.+.+.
T Consensus       117 l~~~~~~~--~~~~~~~~~~~~---~~~~e~SAk~g~~v~e~f~~i~~~l~  162 (164)
T d1yzqa1         117 LADKRQVS--IEEGERKAKELN---VMFIETSAKAGYNVKQLFRRVAAALP  162 (164)
T ss_dssp             CGGGCCSC--HHHHHHHHHHTT---CEEEECCTTTCTTHHHHHHHHHHHSC
T ss_pred             hhhhhhhh--HHHHHHHHHHcC---CEEEEecCCCCcCHHHHHHHHHHhhC
Confidence            86432211  123334444443   48999999999999999999988753

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=99.48  E-value=7.6e-14  Score=90.40  Aligned_cols=108  Identities=12%  Similarity=0.057  Sum_probs=67.3

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHHHHHH----hCCceEEEEecc
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKT  106 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~~l~~----~~~~~ivv~nK~  106 (162)
                      .+.++|+||....          ..+...+++.   ++++++|.|.....+-.. ..++..+..    .++|+++|.||+
T Consensus        53 ~l~i~d~~g~~~~----------~~~~~~~~~~---~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiivgnK~  119 (168)
T d1u8za_          53 QIDILDTAGQEDY----------AAIRDNYFRS---GEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKS  119 (168)
T ss_dssp             EEEEEECCC---C----------HHHHHHHHHH---CSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECG
T ss_pred             cccccccccccch----------hhhhhhcccc---cceeEEEeeccchhhhhhHHHHHHHHHHhhCCCCCcEEEEeccc
Confidence            4789999998322          3344444433   499999999876322211 123333322    368999999999


Q ss_pred             CCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293          107 DTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  157 (162)
Q Consensus       107 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~  157 (162)
                      |+.+...+.  .+..++.....+   .+++++||++|.|+++++.+|.+.+
T Consensus       120 Dl~~~~~v~--~~~~~~~~~~~~---~~~~e~Sak~g~gv~e~f~~l~~~i  165 (168)
T d1u8za_         120 DLEDKRQVS--VEEAKNRADQWN---VNYVETSAKTRANVDKVFFDLMREI  165 (168)
T ss_dssp             GGGGGCCSC--HHHHHHHHHHHT---CEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             ccccccccc--HHHHHHHHHHcC---CeEEEEcCCCCcCHHHHHHHHHHHH
Confidence            985432211  122333334333   4889999999999999999988765

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.47  E-value=4.8e-14  Score=93.44  Aligned_cols=139  Identities=15%  Similarity=0.085  Sum_probs=82.1

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT   77 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~   77 (162)
                      |+|+|++........+..|++........   ...+.+|||||....          ..+...++   +.++++++|+|+
T Consensus        22 li~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~~----------~~~~~~~~---~~a~~~i~v~d~   88 (194)
T d2bcgy1          22 LLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERF----------RTITSSYY---RGSHGIIIVYDV   88 (194)
T ss_dssp             HHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTT----------TCCCGGGG---TTCSEEEEEEET
T ss_pred             HHHHHhhCCCCCCcCCccceeEEEEEEEEeeEEEEEEEEECCCchhh----------HHHHHHHh---ccCCEEEEEEeC
Confidence            46666655222333445555544433433   224889999998221          22223333   456999999998


Q ss_pred             CCCCCccHHH-HHHHHHH---hCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHH
Q 031293           78 KWGVKPRDHE-LISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVL  153 (162)
Q Consensus        78 ~~~~~~~~~~-~~~~l~~---~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i  153 (162)
                      ....+-.... +...+..   ...|+++|.||+|+.+......  +.........+   .+++++||++|.|+++++..+
T Consensus        89 t~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~--~~~~~~~~~~~---~~~~e~SAk~g~gi~e~f~~l  163 (194)
T d2bcgy1          89 TDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEY--DVAKEFADANK---MPFLETSALDSTNVEDAFLTM  163 (194)
T ss_dssp             TCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCH--HHHHHHHHHTT---CCEEECCTTTCTTHHHHHHHH
T ss_pred             cchhhhhhHhhhhhhhhhcccCCceEEEEEeccccccccchhH--HHHhhhhhccC---cceEEEecCcCccHHHHHHHH
Confidence            7532222211 2222322   2578999999999875433221  12222233332   489999999999999999999


Q ss_pred             HHhh
Q 031293          154 SKIA  157 (162)
Q Consensus       154 ~~~~  157 (162)
                      .+.+
T Consensus       164 ~~~i  167 (194)
T d2bcgy1         164 ARQI  167 (194)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8754

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=1.1e-13  Score=89.37  Aligned_cols=108  Identities=15%  Similarity=0.096  Sum_probs=67.9

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCcc-HHHHHHHHHH---hCCceEEEEeccC
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPR-DHELISLMER---SQTKYQVVLTKTD  107 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~-~~~~~~~l~~---~~~~~ivv~nK~D  107 (162)
                      ++.++|+||+...          ......+.+.   +|+++++.|..+.-+-. ...++..+..   ...|++++.||+|
T Consensus        54 ~l~i~D~~g~~~~----------~~~~~~~~~~---~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~D  120 (166)
T d1z0fa1          54 KLQIWDTAGQERF----------RAVTRSYYRG---AAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKAD  120 (166)
T ss_dssp             EEEEEECTTGGGT----------CHHHHHHHHT---CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTT
T ss_pred             EEEEeccCCchhH----------HHHHHHHhcC---CcEEEEEeccCchHHHHHHHHHHHHHHhhccccceEEEEccccc
Confidence            5889999998222          3344444443   48999999986532111 1223333332   2478999999999


Q ss_pred             CCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293          108 TVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  157 (162)
Q Consensus       108 l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~  157 (162)
                      +.......  .+..++.....+   .+++++||++|.|+++++..|.+.+
T Consensus       121 l~~~~~~~--~~~~~~~~~~~~---~~~~e~Saktg~~v~e~f~~i~~~i  165 (166)
T d1z0fa1         121 LEAQRDVT--YEEAKQFAEENG---LLFLEASAKTGENVEDAFLEAAKKI  165 (166)
T ss_dssp             CGGGCCSC--HHHHHHHHHHTT---CEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             chhhcccH--HHHHHHHHHHcC---CEEEEEeCCCCCCHHHHHHHHHHHh
Confidence            85332211  122333444443   4899999999999999999987653

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=6.8e-14  Score=90.82  Aligned_cols=109  Identities=13%  Similarity=0.121  Sum_probs=66.8

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHH-HHH---HhCCceEEEEecc
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELIS-LME---RSQTKYQVVLTKT  106 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~-~l~---~~~~~~ivv~nK~  106 (162)
                      .+.++|++|....          ......++.   .+|++++|.|...+-+-.. ..+.. .+.   ....|+++|.||+
T Consensus        54 ~~~~~d~~g~~~~----------~~~~~~~~~---~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilvgnK~  120 (171)
T d2erya1          54 RLDILDTAGQEEF----------GAMREQYMR---TGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKA  120 (171)
T ss_dssp             EEEEEECC----C----------CHHHHHHHH---HCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCSEEEEEECT
T ss_pred             ccccccccccccc----------ccccccccc---ccceEEEeeccccccchhhHHHHhHHHHhhcccCCCCEEEEEecc
Confidence            5889999998332          223333333   3499999999876321111 11222 222   2358899999999


Q ss_pred             CCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293          107 DTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR  158 (162)
Q Consensus       107 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~  158 (162)
                      |+.+......  +..++.....+   .+++.+||++|.|+++++..|.+.+.
T Consensus       121 Dl~~~~~v~~--~~~~~~~~~~~---~~~~e~Sak~~~~i~e~f~~l~~~i~  167 (171)
T d2erya1         121 DLDHQRQVTQ--EEGQQLARQLK---VTYMEASAKIRMNVDQAFHELVRVIR  167 (171)
T ss_dssp             TCTTSCSSCH--HHHHHHHHHTT---CEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred             chhhhccchH--HHHHHHHHHcC---CEEEEEcCCCCcCHHHHHHHHHHHHH
Confidence            9864432211  22333444443   48899999999999999999988775

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.45  E-value=9.3e-14  Score=89.83  Aligned_cols=109  Identities=13%  Similarity=0.074  Sum_probs=68.1

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHH-HHHHHHH---hCCceEEEEeccC
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHE-LISLMER---SQTKYQVVLTKTD  107 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~-~~~~l~~---~~~~~ivv~nK~D  107 (162)
                      .+.++|++|....          ..+...++.   .+++++++.|...+-+-.... ++.....   .+.|+++|.||+|
T Consensus        54 ~~~i~d~~g~~~~----------~~~~~~~~~---~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~D  120 (167)
T d1z0ja1          54 KFLIWDTAGLERF----------RALAPMYYR---GSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCD  120 (167)
T ss_dssp             EEEEEEECCSGGG----------GGGTHHHHT---TCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTT
T ss_pred             ceeeeecCCchhh----------hHHHHHHHh---hccceEEEeeechhhhhhhHHHhhhhhhhccCCcceEEEecccch
Confidence            3679999998222          333444443   348999999986532111111 1222222   3578999999999


Q ss_pred             CCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293          108 TVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR  158 (162)
Q Consensus       108 l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~  158 (162)
                      +.+......  +..++.....+   .+++++||++|.|+++++..|.+.++
T Consensus       121 l~~~~~v~~--~~~~~~~~~~~---~~~~e~SAk~~~nV~e~f~~l~~~i~  166 (167)
T d1z0ja1         121 LTDVREVME--RDAKDYADSIH---AIFVETSAKNAININELFIEISRRIP  166 (167)
T ss_dssp             CGGGCCSCH--HHHHHHHHHTT---CEEEECBTTTTBSHHHHHHHHHHHCC
T ss_pred             hccccchhH--HHHHHHHHHcC---CEEEEEecCCCCCHHHHHHHHHHhCC
Confidence            864322211  22333444333   48999999999999999999987653

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=5.1e-13  Score=86.81  Aligned_cols=139  Identities=8%  Similarity=-0.038  Sum_probs=78.4

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEeCC---ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKLGT---KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT   77 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~~~---~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~   77 (162)
                      |+|++++..........++.+........+.   .+.++|++|....          .   .........+++++++.|.
T Consensus        22 li~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~----------~---~~~~~~~~~~~~~i~~~d~   88 (174)
T d1wmsa_          22 LMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERF----------R---SLRTPFYRGSDCCLLTFSV   88 (174)
T ss_dssp             HHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGG----------H---HHHGGGGTTCSEEEEEEET
T ss_pred             HHHHHHhCCCCCccccceeeeeeeeeeeecCceeeEeeecccCccee----------h---hhhhhhhhccceEEEEEee
Confidence            4566665422223333444444333333332   3679999997221          2   2222334456999999998


Q ss_pred             CCCCCccH-HHHHHHHHH-------hCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHH
Q 031293           78 KWGVKPRD-HELISLMER-------SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSL  149 (162)
Q Consensus        78 ~~~~~~~~-~~~~~~l~~-------~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l  149 (162)
                      ....+-.. ..+...+..       .+.|+++|.||+|+.+.....   +..++.....+.  .+++++||++|.|++++
T Consensus        89 ~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~~~~v~~---~~~~~~~~~~~~--~~~~e~Sak~~~gI~e~  163 (174)
T d1wmsa_          89 DDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVST---EEAQAWCRDNGD--YPYFETSAKDATNVAAA  163 (174)
T ss_dssp             TCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCH---HHHHHHHHHTTC--CCEEECCTTTCTTHHHH
T ss_pred             ecccccchhhhHHHHHHHHhccccCCCceEEEeccccchhhccCcH---HHHHHHHHHcCC--CeEEEEcCCCCcCHHHH
Confidence            75321111 112222221       257999999999986532111   223334443332  58999999999999999


Q ss_pred             HHHHHHhh
Q 031293          150 RTVLSKIA  157 (162)
Q Consensus       150 ~~~i~~~~  157 (162)
                      ++.+.+.+
T Consensus       164 f~~l~~~i  171 (174)
T d1wmsa_         164 FEEAVRRV  171 (174)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99887654

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=1.6e-13  Score=88.93  Aligned_cols=111  Identities=14%  Similarity=0.071  Sum_probs=68.8

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHHHHH-----HhCCceEEEEec
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLME-----RSQTKYQVVLTK  105 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~~l~-----~~~~~~ivv~nK  105 (162)
                      .+.++|++|....          ......++.   .++++++|.|...+-+-.. ..++..+.     ..++|+++|.||
T Consensus        51 ~l~~~d~~g~~~~----------~~~~~~~~~---~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilVgnK  117 (171)
T d2erxa1          51 TLQITDTTGSHQF----------PAMQRLSIS---KGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNK  117 (171)
T ss_dssp             EEEEEECCSCSSC----------HHHHHHHHH---HCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEEC
T ss_pred             eeccccccccccc----------ccccccccc---ceeEEEEEeecccccchhcccchhhhhhhhhccCCCCcEEEEeec
Confidence            4778999998332          333344433   3499999999875311111 12222221     135899999999


Q ss_pred             cCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhhhh
Q 031293          106 TDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARFA  160 (162)
Q Consensus       106 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~~~  160 (162)
                      +|+.+...+..  +..++.....+   .+++++||++|.|++++++.|.+++...
T Consensus       118 ~Dl~~~~~v~~--~e~~~~~~~~~---~~~~e~Sak~~~~v~e~f~~l~~~~~~~  167 (171)
T d2erxa1         118 CDESPSREVQS--SEAEALARTWK---CAFMETSAKLNHNVKELFQELLNLEKRR  167 (171)
T ss_dssp             GGGGGGCCSCH--HHHHHHHHHHT---CEEEECBTTTTBSHHHHHHHHHHTCCSS
T ss_pred             ccccccccccH--HHHHHHHHHcC---CeEEEEcCCCCcCHHHHHHHHHHHHHHh
Confidence            99864322211  12233333333   4899999999999999999999876543

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.45  E-value=5.1e-14  Score=91.64  Aligned_cols=109  Identities=16%  Similarity=0.133  Sum_probs=59.7

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHH-HHHHHHH---hCCceEEEEeccC
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHE-LISLMER---SQTKYQVVLTKTD  107 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~-~~~~l~~---~~~~~ivv~nK~D  107 (162)
                      .+.++||||+          +.+......+   .+.++++++|+|++.+.+-.... +...+..   .+.|+++|.||.|
T Consensus        56 ~l~i~D~~G~----------e~~~~~~~~~---~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~D  122 (173)
T d2fu5c1          56 KLQIWDTAGQ----------ERFRTITTAY---YRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCD  122 (173)
T ss_dssp             EEEEEEC-------------------CCTT---TTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--
T ss_pred             EEEEEECCCc----------hhhHHHHHHh---ccCCCEEEEEEECCChhhHHHHHHHHHHhhhhccCCceEEEEEeccc
Confidence            4778999998          2223223333   35569999999987643222221 2233322   2578999999999


Q ss_pred             CCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293          108 TVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR  158 (162)
Q Consensus       108 l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~  158 (162)
                      .........  +.........+   .+++.+||++|.|+++++.+|.+.+.
T Consensus       123 ~~~~~~~~~--~~~~~~~~~~~---~~~~e~Sa~~g~gv~e~f~~l~~~i~  168 (173)
T d2fu5c1         123 VNDKRQVSK--ERGEKLALDYG---IKFMETSAKANINVENAFFTLARDIK  168 (173)
T ss_dssp             CCSCCCSCH--HHHHHHHHHHT---CEEEECCC---CCHHHHHHHHHHHHH
T ss_pred             chhhcccHH--HHHHHHHHhcC---CEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            875332211  11222223232   48999999999999999999988664

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=5.1e-14  Score=91.77  Aligned_cols=139  Identities=13%  Similarity=0.067  Sum_probs=77.8

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEeCC---ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKLGT---KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT   77 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~~~---~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~   77 (162)
                      |+|++.+........+.++.+........+.   .+.++|+||....          ......++   ..++++++|.|.
T Consensus        20 Li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~e~~----------~~~~~~~~---~~~~~~i~v~d~   86 (175)
T d2f9la1          20 LLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERY----------RRITSAYY---RGAVGALLVYDI   86 (175)
T ss_dssp             HHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGT----------TCCCHHHH---TTCSEEEEEEET
T ss_pred             HHHHHHhCCCCCcccccccceeeeEEEEECCEEEEEEecccCCcHHH----------HHHHHHHh---hccCeEEEEEEC
Confidence            4666655522222233333333333334433   5889999997221          12222333   335999999998


Q ss_pred             CCCCCcc-HHHHHHHHHH---hCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHH
Q 031293           78 KWGVKPR-DHELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVL  153 (162)
Q Consensus        78 ~~~~~~~-~~~~~~~l~~---~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i  153 (162)
                      ..+-+-. ...++..+..   .++|+++|.||+|+.+......  +.........+   .+++++||++|.|+++++..+
T Consensus        87 ~~~~S~~~~~~~~~~i~~~~~~~~piilvgnK~Dl~~~~~~~~--~~~~~~~~~~~---~~~~e~Sa~~g~~i~e~f~~l  161 (175)
T d2f9la1          87 AKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPT--DEARAFAEKNN---LSFIETSALDSTNVEEAFKNI  161 (175)
T ss_dssp             TCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCH--HHHHHHHHHTT---CEEEECCTTTCTTHHHHHHHH
T ss_pred             CCcccchhHHHHHHHHHHhcCCCCcEEEEEeeecccccccchH--HHHHHhhcccC---ceEEEEecCCCcCHHHHHHHH
Confidence            7632111 1223333332   2589999999999874322111  11122222232   589999999999999999888


Q ss_pred             HHhh
Q 031293          154 SKIA  157 (162)
Q Consensus       154 ~~~~  157 (162)
                      .+.+
T Consensus       162 ~~~i  165 (175)
T d2f9la1         162 LTEI  165 (175)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7654

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=1.8e-13  Score=89.24  Aligned_cols=111  Identities=14%  Similarity=0.039  Sum_probs=69.9

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCC--ccHHHHHHHHHHh--CCceEEEEeccC
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVK--PRDHELISLMERS--QTKYQVVLTKTD  107 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~--~~~~~~~~~l~~~--~~~~ivv~nK~D  107 (162)
                      .+.++|+||+...          ......+   .+.+|++++|.|...+-+  ....++...+...  ++|+++|.||+|
T Consensus        51 ~l~i~D~~g~~~~----------~~~~~~~---~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~~piilvgnK~D  117 (177)
T d1kmqa_          51 ELALWDTAGLEDY----------DRLRPLS---YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD  117 (177)
T ss_dssp             EEEEEEECCSGGG----------TTTGGGG---CTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECGG
T ss_pred             eeeccccCccchh----------cccchhh---cccchhhhhhcccchhHHHHHHHHHHHHHHHHhCCCCceEEeeeccc
Confidence            4889999998221          2222333   345699999999875321  1112233334332  589999999999


Q ss_pred             CCCcHHHHHHH----------HHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293          108 TVFPIDVARRA----------MQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  157 (162)
Q Consensus       108 l~~~~~~~~~~----------~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~  157 (162)
                      +.+........          +..++.....+  ..+++++||++|.|++++++.+.+.+
T Consensus       118 l~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~--~~~~~E~SAkt~~gi~e~F~~i~~~~  175 (177)
T d1kmqa_         118 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIG--AFGYMECSAKTKDGVREVFEMATRAA  175 (177)
T ss_dssp             GTTCHHHHHHHHHTTCCCCCHHHHHHHHHHTT--CSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             ccchhhHHHHHHHhhcccccHHHHHHHHHHcC--CcEEEEecCCCCcCHHHHHHHHHHHH
Confidence            98654332111          12223333332  25789999999999999999987654

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=2.9e-13  Score=87.71  Aligned_cols=109  Identities=20%  Similarity=0.216  Sum_probs=66.5

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHH-HHHHHH-HH--hCCceEEEEeccC
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDH-ELISLM-ER--SQTKYQVVLTKTD  107 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~-~~~~~l-~~--~~~~~ivv~nK~D  107 (162)
                      ++.++||||+          +.+..+...+   .+.+|+++++.|.....+-... .+...+ ..  ...|+++|.||+|
T Consensus        57 ~l~i~Dt~G~----------e~~~~~~~~~---~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~d  123 (170)
T d2g6ba1          57 KLQMWDTAGQ----------ERFRSVTHAY---YRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVD  123 (170)
T ss_dssp             EEEEEECCCC------------------CC---GGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCS
T ss_pred             EEEEEECCCc----------hhhHHHHHHh---hcCCceeEEEecCCcccchhhhhhhhhhhhhccCCCceEEEEEeeec
Confidence            4789999998          2223333333   3456999999998753221111 122222 22  2578999999999


Q ss_pred             CCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293          108 TVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR  158 (162)
Q Consensus       108 l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~  158 (162)
                      +..+.....  +...+.....+   .+++++||++|.|+++++++|.+.+.
T Consensus       124 ~~~~~~v~~--~~~~~~~~~~~---~~~~e~Sak~g~gi~e~f~~l~~~i~  169 (170)
T d2g6ba1         124 SAHERVVKR--EDGEKLAKEYG---LPFMETSAKTGLNVDLAFTAIAKELK  169 (170)
T ss_dssp             TTSCCCSCH--HHHHHHHHHHT---CCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             hhhcccccH--HHHHHHHHHcC---CEEEEEeCCCCcCHHHHHHHHHHHcC
Confidence            876533221  12223333333   49999999999999999999987653

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=1.4e-13  Score=89.28  Aligned_cols=109  Identities=14%  Similarity=0.115  Sum_probs=68.9

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHHHHHH---hCCceEEEEeccC
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTD  107 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~~l~~---~~~~~ivv~nK~D  107 (162)
                      .+.++|+||...          +..+...+++   .+++++++.|.....+-.. ..+...+..   .+.|+++|.||+|
T Consensus        56 ~~~~~d~~g~~~----------~~~~~~~~~~---~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~D  122 (170)
T d1r2qa_          56 KFEIWDTAGQER----------YHSLAPMYYR---GAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKAD  122 (170)
T ss_dssp             EEEEEEECCSGG----------GGGGHHHHHT---TCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGG
T ss_pred             EEEeccCCCchh----------hhhhHHHHhh---CcceEEEEeccchhhHHHHHHHHhhhhhhccCCCceEEeeccccc
Confidence            488999999822          2333444543   3589999999765321111 122233322   2578999999999


Q ss_pred             CCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293          108 TVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR  158 (162)
Q Consensus       108 l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~  158 (162)
                      +.++..+..  +..++.....+   .+++.+||++|.|+++++..|.+.+.
T Consensus       123 l~~~~~v~~--e~~~~~~~~~~---~~~~e~SAk~g~~V~e~f~~l~~~i~  168 (170)
T d1r2qa_         123 LANKRAVDF--QEAQSYADDNS---LLFMETSAKTSMNVNEIFMAIAKKLP  168 (170)
T ss_dssp             GGGGCCSCH--HHHHHHHHHTT---CEEEECCTTTCTTHHHHHHHHHHTSC
T ss_pred             ccccccccH--HHHHHHHHhcC---CEEEEeeCCCCCCHHHHHHHHHHHHh
Confidence            864432211  22333333332   48999999999999999999987654

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=2.2e-13  Score=88.05  Aligned_cols=108  Identities=18%  Similarity=0.095  Sum_probs=66.8

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHHHHH---HhCCceEEEEeccC
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLME---RSQTKYQVVLTKTD  107 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~~l~---~~~~~~ivv~nK~D  107 (162)
                      .+.++|++|...          +..+...+   .+.+|++++|.|...+.+-.. ..+++.+.   ....|+++|.||+|
T Consensus        53 ~~~~~d~~g~~~----------~~~~~~~~---~~~~~~~i~v~d~~~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~D  119 (167)
T d1z08a1          53 NLAIWDTAGQER----------FHALGPIY---YRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKID  119 (167)
T ss_dssp             EEEEEECCCC-----------------CCS---STTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGG
T ss_pred             eeeeeccCCcce----------ecccchhh---ccCCceeEEEEeCCchhHHHhhhhhhhhcccccccccceeeeccccc
Confidence            478999999821          12222223   345699999999876422111 11222222   23577899999999


Q ss_pred             CCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293          108 TVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  157 (162)
Q Consensus       108 l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~  157 (162)
                      +.++..+..  +..++.....+   .+++++||++|.|+++++.+|.+.+
T Consensus       120 l~~~~~v~~--~e~~~~a~~~~---~~~~e~Sak~~~~v~e~F~~l~~~i  164 (167)
T d1z08a1         120 LEKERHVSI--QEAESYAESVG---AKHYHTSAKQNKGIEELFLDLCKRM  164 (167)
T ss_dssp             GGGGCCSCH--HHHHHHHHHTT---CEEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred             cccccccch--HHHHHHHHHcC---CeEEEEecCCCcCHHHHHHHHHHHH
Confidence            864332211  23334444443   4899999999999999999998754

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=2.8e-13  Score=89.00  Aligned_cols=111  Identities=12%  Similarity=-0.013  Sum_probs=69.5

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCC--ccHHHHHHHHHHh--CCceEEEEeccC
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVK--PRDHELISLMERS--QTKYQVVLTKTD  107 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~--~~~~~~~~~l~~~--~~~~ivv~nK~D  107 (162)
                      ++.++|+||....          ..+...+   .+.+|++++|.|....-+  ....++...++..  ++|+++|.||+|
T Consensus        58 ~l~i~D~~g~e~~----------~~~~~~~---~~~a~~~ilv~d~t~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~D  124 (185)
T d2atxa1          58 LLGLYDTAGQEDY----------DRLRPLS---YPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQID  124 (185)
T ss_dssp             EEEEECCCCSSSS----------TTTGGGG---CTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTT
T ss_pred             Eeecccccccchh----------hhhhhhc---ccccceeeeccccchHHHHHHHHHHHHHHHHhcCCCCCeeEeeeccc
Confidence            4789999998332          2222333   334699999999876321  1112233344332  689999999999


Q ss_pred             CCCcHHHHHH----------HHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293          108 TVFPIDVARR----------AMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  157 (162)
Q Consensus       108 l~~~~~~~~~----------~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~  157 (162)
                      +.+.......          .+..++.....+.  .+++++||++|.|++++++.+.+.+
T Consensus       125 l~~~~~~~~~~~~~~~r~v~~~~~~~~a~~~~~--~~~~E~SAk~~~gv~e~F~~li~~i  182 (185)
T d2atxa1         125 LRDDPKTLARLNDMKEKPICVEQGQKLAKEIGA--CCYVECSALTQKGLKTVFDEAIIAI  182 (185)
T ss_dssp             STTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTC--SCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             cccchhhhhhhhhcccccccHHHHHHHHHHcCC--CEEEEecCCCCcCHHHHHHHHHHHH
Confidence            9864433211          1122333333332  5889999999999999999887653

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=6.3e-14  Score=90.96  Aligned_cols=106  Identities=15%  Similarity=0.040  Sum_probs=67.9

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCC--CccHHHHHHHHH-HhCCceEEEEeccCC
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV--KPRDHELISLME-RSQTKYQVVLTKTDT  108 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~--~~~~~~~~~~l~-~~~~~~ivv~nK~Dl  108 (162)
                      ++.++||||..          .+..+...+   .+.+++++++.|.....  .....++....+ ..++|+++|.||+|+
T Consensus        53 ~l~i~D~~g~~----------~~~~~~~~~---~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~piilvgnK~Dl  119 (170)
T d1i2ma_          53 KFNVWDTAGQE----------KFGGLRDGY---YIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDI  119 (170)
T ss_dssp             EEEEEECTTHH----------HHSSCGGGG---TTTCCEEEEEEETTSGGGGTTHHHHHHHHHHHHCSCCEEEEEECCCC
T ss_pred             ccccccccccc----------ccceecchh---cccccchhhccccccccccchhHHHHHHHhhccCCCceeeecchhhh
Confidence            58999999981          112222233   34569999999987643  222222222222 236999999999999


Q ss_pred             CCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293          109 VFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  157 (162)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~  157 (162)
                      ..+....+    ........   ..+++++||++|.|+++++.+|.+.+
T Consensus       120 ~~~~~~~~----~~~~~~~~---~~~~~e~Sak~~~~v~e~f~~l~~~l  161 (170)
T d1i2ma_         120 KDRKVKAK----SIVFHRKK---NLQYYDISAKSNYNFEKPFLWLARKL  161 (170)
T ss_dssp             SCSCCTTT----SHHHHSSC---SSEEEEEBTTTTBTTTHHHHHHHHHH
T ss_pred             hhhhhhhH----HHHHHHHc---CCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            75443221    11222222   25899999999999999999998754

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.43  E-value=1.5e-13  Score=88.70  Aligned_cols=139  Identities=15%  Similarity=0.130  Sum_probs=78.5

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEeCC---ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKLGT---KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT   77 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~~~---~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~   77 (162)
                      |+|+|++........+..+.+........+.   ++.++||||....          ..+...++   +.++++++|+|.
T Consensus        18 li~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~~~----------~~~~~~~~---~~~~~~i~v~d~   84 (166)
T d1g16a_          18 LLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERF----------RTITTAYY---RGAMGIILVYDI   84 (166)
T ss_dssp             HHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGT----------SCCCHHHH---TTEEEEEEEEET
T ss_pred             HHHHHHhCCCCCccCCccceeEEEEEEEECCEEEEEEEEECCCchhh----------HHHHHHHH---hcCCEEEEEEEC
Confidence            4566665522222233333333333333322   4778999997221          22233343   345999999999


Q ss_pred             CCCCCccHHH-HHHHHHH---hCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHH
Q 031293           78 KWGVKPRDHE-LISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVL  153 (162)
Q Consensus        78 ~~~~~~~~~~-~~~~l~~---~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i  153 (162)
                      .++-+-.... +......   ...|++++.||.|+.+.....+..   ++.....+   .+++++||++|.|+++++++|
T Consensus        85 ~~~~s~~~~~~~~~~~~~~~~~~~~~i~~~~k~d~~~~~~~~~~~---~~~~~~~~---~~~~~~Sa~~~~~v~e~f~~l  158 (166)
T d1g16a_          85 TDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQG---EALAKELG---IPFIESSAKNDDNVNEIFFTL  158 (166)
T ss_dssp             TCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCCSCHHHH---HHHHHHHT---CCEEECBTTTTBSHHHHHHHH
T ss_pred             CCccCHHHHHhhhhhhhccccCcceeeeecchhhhhhhhhhHHHH---HHHHHhcC---CeEEEECCCCCCCHHHHHHHH
Confidence            8643222222 1222222   246789999999987554333322   22333333   599999999999999999999


Q ss_pred             HHhhh
Q 031293          154 SKIAR  158 (162)
Q Consensus       154 ~~~~~  158 (162)
                      .+.+.
T Consensus       159 ~~~i~  163 (166)
T d1g16a_         159 AKLIQ  163 (166)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            87663

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=4.5e-13  Score=87.98  Aligned_cols=107  Identities=16%  Similarity=0.166  Sum_probs=70.1

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHH-------hCCceEEEEe
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMER-------SQTKYQVVLT  104 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~-------~~~~~ivv~n  104 (162)
                      ++.++||||+          +.+..+...++.   +++++++|.|.....+-  ..+..++..       ...|+++|.|
T Consensus        65 ~~~i~dt~G~----------e~~~~~~~~~~~---~~~~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~~iilv~n  129 (186)
T d2f7sa1          65 HLQLWDTAGQ----------ERFRSLTTAFFR---DAMGFLLMFDLTSQQSF--LNVRNWMSQLQANAYCENPDIVLIGN  129 (186)
T ss_dssp             EEEEEEEESH----------HHHHHHHHHHHT---TCCEEEEEEETTCHHHH--HHHHHHHHTCCCCCTTTCCEEEEEEE
T ss_pred             EeccccCCcc----------hhhHHHHHHHHh---cCCEEEEEEeccccccc--eeeeeccchhhhhccCCCceEEEEee
Confidence            5889999998          344445555544   45999999998753211  112223321       1367899999


Q ss_pred             ccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293          105 KTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR  158 (162)
Q Consensus       105 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~  158 (162)
                      |+|+.....+..  +...+.....+   .+++++||++|.|+++++++|.+.+.
T Consensus       130 K~Dl~~~~~v~~--~e~~~~~~~~~---~~~~e~Sak~~~~i~e~f~~l~~~i~  178 (186)
T d2f7sa1         130 KADLPDQREVNE--RQARELADKYG---IPYFETSAATGQNVEKAVETLLDLIM  178 (186)
T ss_dssp             CTTCGGGCCSCH--HHHHHHHHHTT---CCEEEEBTTTTBTHHHHHHHHHHHHH
T ss_pred             eccchhhhcchH--HHHHHHHHHcC---CEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            999864332211  12333444443   48999999999999999999987653

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=99.42  E-value=4.3e-13  Score=87.14  Aligned_cols=141  Identities=13%  Similarity=0.114  Sum_probs=82.8

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEeCCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCC
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG   80 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~   80 (162)
                      |+|+|.+. .....+...+.+... ....+.++.++|++|....          ......+..   .++.+++++|....
T Consensus        31 Li~rl~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~~~~~~----------~~~~~~~~~---~~~~~i~v~d~~d~   95 (177)
T d1zj6a1          31 ILYQFSMN-EVVHTSPTIGSNVEE-IVINNTRFLMWDIGGQESL----------RSSWNTYYT---NTEFVIVVVDSTDR   95 (177)
T ss_dssp             HHHHHHTT-SCEEEECCSCSSCEE-EEETTEEEEEEECCC--------------CGGGHHHHT---TCCEEEEEEETTCT
T ss_pred             HHHHHhcC-CCCccccccceeEEE-EeecceEEEEecccccccc----------ccchhhhhc---cceeeeeecccccc
Confidence            57788777 455566665544322 2233556999999988332          122233332   24888899988654


Q ss_pred             CCccHHHH-H-HHHH---HhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHH
Q 031293           81 VKPRDHEL-I-SLME---RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSK  155 (162)
Q Consensus        81 ~~~~~~~~-~-~~l~---~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~  155 (162)
                      ........ . ....   ....|+++|+||+|+.......+..+...  .........+++++||++|+|+++++++|.+
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~i~~~~~--~~~~~~~~~~~~~~Sa~tg~Gi~e~~~~L~~  173 (177)
T d1zj6a1          96 ERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLK--LTSIKDHQWHIQACCALTGEGLCQGLEWMMS  173 (177)
T ss_dssp             TTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHT--GGGCCSSCEEEEECBTTTTBTHHHHHHHHHH
T ss_pred             cchhhhhhhhhhhhhcccccceEEEEEEEcccccccCcHHHHHHHHH--HHhhHhcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence            32222111 1 1111   23689999999999875443332222221  1112223458999999999999999999998


Q ss_pred             hhh
Q 031293          156 IAR  158 (162)
Q Consensus       156 ~~~  158 (162)
                      .++
T Consensus       174 ~lk  176 (177)
T d1zj6a1         174 RLK  176 (177)
T ss_dssp             HHC
T ss_pred             HhC
Confidence            764

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=3.2e-13  Score=87.20  Aligned_cols=110  Identities=15%  Similarity=0.104  Sum_probs=68.7

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHHHHHH----hCCceEEEEecc
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKT  106 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~~l~~----~~~~~ivv~nK~  106 (162)
                      ++.++|++|....          ......+..   .+++++++.|.....+-.. ..+...+..    .++|+++|.||+
T Consensus        52 ~l~~~d~~g~~~~----------~~~~~~~~~---~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~  118 (167)
T d1kaoa_          52 VLEILDTAGTEQF----------ASMRDLYIK---NGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKV  118 (167)
T ss_dssp             EEEEEECCCTTCC----------HHHHHHHHH---HCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECG
T ss_pred             eeccccCCCcccc----------ccchHHHhh---cccceeeeeeecchhhhhhhhchhhhhhhhccCCCCCEEEEEEcc
Confidence            4889999997332          333444433   3499999999875321111 112222221    258999999999


Q ss_pred             CCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhhh
Q 031293          107 DTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARF  159 (162)
Q Consensus       107 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~~  159 (162)
                      |+.+......  +..+......+   .+++++||++|.|+++++..|.+.+.+
T Consensus       119 Dl~~~~~~~~--~~~~~~~~~~~---~~~~e~Sak~g~~i~e~f~~i~~~i~~  166 (167)
T d1kaoa_         119 DLESEREVSS--SEGRALAEEWG---CPFMETSAKSKTMVDELFAEIVRQMNY  166 (167)
T ss_dssp             GGGGGCCSCH--HHHHHHHHHHT---SCEEEECTTCHHHHHHHHHHHHHHHHH
T ss_pred             chhhcccchH--HHHHHHHHHcC---CeEEEECCCCCcCHHHHHHHHHHHHcc
Confidence            9864322111  12222333333   489999999999999999999876643

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=7.9e-14  Score=90.72  Aligned_cols=110  Identities=14%  Similarity=0.076  Sum_probs=69.0

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHHHHH----HhCCceEEEEecc
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLME----RSQTKYQVVLTKT  106 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~~l~----~~~~~~ivv~nK~  106 (162)
                      .+.++|++|....          ......+++   .+++++++.|.....+-.. ..++..+.    ..+.|+++|.||+
T Consensus        55 ~l~~~d~~g~~~~----------~~~~~~~~~---~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilvgnK~  121 (173)
T d2fn4a1          55 RLDILDTAGQEEF----------GAMREQYMR---AGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKA  121 (173)
T ss_dssp             EEEEEECCCTTTT----------SCCHHHHHH---HCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECG
T ss_pred             eeecccccccccc----------ccccchhhc---cceeeeeecccccccccchhhhhhHHHHHHhccCCCceEEEEEee
Confidence            4778999998432          122233332   2499999999876422211 12233222    1357999999999


Q ss_pred             CCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhhh
Q 031293          107 DTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARF  159 (162)
Q Consensus       107 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~~  159 (162)
                      |+.+.....  .+..+......+   .+++.+||++|.|++++++.+.+.+..
T Consensus       122 Dl~~~~~~~--~~~~~~~~~~~~---~~~~e~Sak~g~gv~e~f~~l~~~i~k  169 (173)
T d2fn4a1         122 DLESQRQVP--RSEASAFGASHH---VAYFEASAKLRLNVDEAFEQLVRAVRK  169 (173)
T ss_dssp             GGGGGCCSC--HHHHHHHHHHTT---CEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             chhhccccc--hhhhhHHHHhcC---CEEEEEeCCCCcCHHHHHHHHHHHHHH
Confidence            986432211  122333334333   488999999999999999999987653

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=2.2e-13  Score=88.83  Aligned_cols=138  Identities=14%  Similarity=0.063  Sum_probs=78.3

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEeC---CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKLG---TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT   77 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~~---~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~   77 (162)
                      |+|+|++........+.++.+........+   .++.++||||....          ..+...++.   .++++++|+|.
T Consensus        23 li~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~~~~~~---~~~~ii~v~d~   89 (177)
T d1x3sa1          23 LLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERF----------RTLTPSYYR---GAQGVILVYDV   89 (177)
T ss_dssp             HHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGG----------CCSHHHHHT---TCCEEEEEEET
T ss_pred             HHHHHHhCCCCCccccceeecceeEEEEEeccccEEEEEECCCchhh----------HHHHHHHHh---cCCEEEEEEEC
Confidence            467776652212222223222222223332   35889999998322          222333433   34899999997


Q ss_pred             CCCCCcc-HHHHHHHHHH----hCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHH
Q 031293           78 KWGVKPR-DHELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTV  152 (162)
Q Consensus        78 ~~~~~~~-~~~~~~~l~~----~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~  152 (162)
                      ....+-. ...++..+..    ...|++++.||.|.........   ..++.....+   .+++.+||++|.|+++++++
T Consensus        90 ~~~~s~~~~~~~~~~i~~~~~~~~~~i~~~~nk~d~~~~~v~~~---~~~~~~~~~~---~~~~e~Sa~tg~gv~e~f~~  163 (177)
T d1x3sa1          90 TRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRN---EGLKFARKHS---MLFIEASAKTCDGVQCAFEE  163 (177)
T ss_dssp             TCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHH---HHHHHHHHTT---CEEEECCTTTCTTHHHHHHH
T ss_pred             CCccccccchhhhhhhcccccccceeeEEEeeccccccccccHH---HHHHHHHHCC---CEEEEEeCCCCCCHHHHHHH
Confidence            6532111 1222333322    2467899999999864332221   2233334343   48999999999999999998


Q ss_pred             HHHhh
Q 031293          153 LSKIA  157 (162)
Q Consensus       153 i~~~~  157 (162)
                      +.+.+
T Consensus       164 l~~~l  168 (177)
T d1x3sa1         164 LVEKI  168 (177)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            87654

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.39  E-value=1.8e-13  Score=89.79  Aligned_cols=139  Identities=11%  Similarity=0.001  Sum_probs=78.9

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEeC---CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKLG---TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT   77 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~~---~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~   77 (162)
                      |+|+|++........++.|.+.....+...   ..+.++|+||.....          ....   .....+++++++.|.
T Consensus        18 Li~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~----------~~~~---~~~~~~~~~i~~~d~   84 (184)
T d1vg8a_          18 LMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQ----------SLGV---AFYRGADCCVLVFDV   84 (184)
T ss_dssp             HHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGS----------CSCC---GGGTTCSEEEEEEET
T ss_pred             HHHHHHhCCCCCCcCCccceeeeeeeeeeCCceEEEEeeecCCccccc----------cccc---ccccCccEEEEeecc
Confidence            466666553222223334444433333332   247899999983321          1111   223456999999998


Q ss_pred             CCCCCccH-HHHHHHHHH-------hCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHH
Q 031293           78 KWGVKPRD-HELISLMER-------SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSL  149 (162)
Q Consensus        78 ~~~~~~~~-~~~~~~l~~-------~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l  149 (162)
                      ....+-.. ..++..+..       .++|+++|.||+|+.++....+   ...+......  ..+++++||++|.|++++
T Consensus        85 ~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~~~~~~~---~~~~~~~~~~--~~~~~e~Sak~~~gI~e~  159 (184)
T d1vg8a_          85 TAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATK---RAQAWCYSKN--NIPYFETSAKEAINVEQA  159 (184)
T ss_dssp             TCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHH---HHHHHHHHTT--SCCEEECBTTTTBSHHHH
T ss_pred             cchhhhhcchhhHHHHHHHhccccccCCCEEEEEEeecccccchhHH---HHHHHHHHhc--CCeEEEEcCCCCcCHHHH
Confidence            65321111 122322221       2579999999999875433222   2222232222  258999999999999999


Q ss_pred             HHHHHHhh
Q 031293          150 RTVLSKIA  157 (162)
Q Consensus       150 ~~~i~~~~  157 (162)
                      ++++.+.+
T Consensus       160 f~~l~~~i  167 (184)
T d1vg8a_         160 FQTIARNA  167 (184)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99987643

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.39  E-value=4.1e-13  Score=86.95  Aligned_cols=108  Identities=18%  Similarity=0.149  Sum_probs=68.6

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHHHH-H---HhCCceEEEEecc
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLM-E---RSQTKYQVVLTKT  106 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~~l-~---~~~~~~ivv~nK~  106 (162)
                      .+.++|++|....          ......++++   +++++++.|...+.+-.. ..++..+ +   ..++|++++.||+
T Consensus        53 ~~~i~d~~g~~~~----------~~~~~~~~~~---~~~~llv~d~~d~~Sf~~~~~~~~~i~~~~~~~~~p~ilvgnK~  119 (169)
T d1x1ra1          53 ILDVLDTAGQEEF----------SAMREQYMRT---GDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKV  119 (169)
T ss_dssp             EEEEEECCSCGGG----------CSSHHHHHHH---CSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECT
T ss_pred             ccccccccccccc----------ccchhhhhhh---ccEEEEecccccchhhhccchhhHHHHhhccccCccEEEEeccc
Confidence            4789999998332          2223344433   499999999876321111 1223322 2   2368999999999


Q ss_pred             CCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCC-CHHHHHHHHHHhh
Q 031293          107 DTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGA-GIRSLRTVLSKIA  157 (162)
Q Consensus       107 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~-g~~~l~~~i~~~~  157 (162)
                      |+.....+..  +..++.....+   .+++.+||+++. |+++++..|.+.+
T Consensus       120 Dl~~~~~v~~--e~~~~~~~~~~---~~~~e~Sak~~~~nV~~~F~~l~~~i  166 (169)
T d1x1ra1         120 DLMHLRKVTR--DQGKEMATKYN---IPYIETSAKDPPLNVDKTFHDLVRVI  166 (169)
T ss_dssp             TCSTTCCSCH--HHHHHHHHHHT---CCEEEEBCSSSCBSHHHHHHHHHHHH
T ss_pred             chhhhceeeh--hhHHHHHHHcC---CEEEEEcCCCCCcCHHHHHHHHHHHH
Confidence            9875433211  22333444443   489999999886 9999999998765

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=7.7e-13  Score=86.65  Aligned_cols=111  Identities=14%  Similarity=-0.016  Sum_probs=68.5

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH--HHHHHHHHHh--CCceEEEEeccC
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMERS--QTKYQVVLTKTD  107 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~--~~~~~~l~~~--~~~~ivv~nK~D  107 (162)
                      ++.++|++|....          ..+...+   .+.+++++++.|....-+-..  .++...++..  ++|+++|.||+|
T Consensus        54 ~~~~~d~~g~~~~----------~~~~~~~---~~~~~~~ilv~d~~~~~sf~~i~~~~~~~~~~~~~~~piilvgnK~D  120 (183)
T d1mh1a_          54 NLGLWDTAGQEDY----------DRLRPLS---YPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLD  120 (183)
T ss_dssp             EEEEECCCCSGGG----------TTTGGGG---CTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHH
T ss_pred             EEEeecccccccc----------hhhhhhc---ccccceeeeeeccchHHHHHHHHHHHHHHHHHhCCCCcEEEEeeccc
Confidence            4789999998221          2222223   345699999999875322111  1233333332  589999999999


Q ss_pred             CCCcHHHHHHH----------HHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293          108 TVFPIDVARRA----------MQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  157 (162)
Q Consensus       108 l~~~~~~~~~~----------~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~  157 (162)
                      +.+........          ..........+  ..+++.+||++|.|++++|..+.+.+
T Consensus       121 l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~--~~~~~E~SAk~~~~V~e~F~~l~~~i  178 (183)
T d1mh1a_         121 LRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG--AVKYLECSALTQRGLKTVFDEAIRAV  178 (183)
T ss_dssp             HHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTT--CSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             chhhhhhhhhhhhccccchhhHHHHHHHHHcC--CceEEEcCCCCCcCHHHHHHHHHHHH
Confidence            87554322110          11222223332  25899999999999999999987653

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=1e-12  Score=85.23  Aligned_cols=111  Identities=13%  Similarity=0.045  Sum_probs=67.9

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHHHHHH----hCCceEEEEecc
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKT  106 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~~l~~----~~~~~ivv~nK~  106 (162)
                      .+.++|+||...       +   +.++..  ...+.+|++++|.|.....+-.. ..+...+..    .++|+++|.||+
T Consensus        54 ~~~~~d~~~~~g-------~---e~~~~~--~~~~~~~~~ilvfd~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~  121 (172)
T d2g3ya1          54 TIILLDMWENKG-------E---NEWLHD--HCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKS  121 (172)
T ss_dssp             EEEEECCTTTTH-------H---HHHHHH--CCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECT
T ss_pred             eeeeeccccccc-------c---cccccc--ccccccceeeeeecccccchhhhhhhhhhhhhhccccCCceEEEEeccc
Confidence            367889886511       0   223222  22456799999999875321111 122233332    258999999999


Q ss_pred             CCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhhh
Q 031293          107 DTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARF  159 (162)
Q Consensus       107 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~~  159 (162)
                      |+.+...+..  +..++.....+   .+++.+||++|.|+++++..|.+.+..
T Consensus       122 Dl~~~~~v~~--~~~~~~a~~~~---~~~~e~Sak~g~~i~~~f~~l~~~i~~  169 (172)
T d2g3ya1         122 DLVRCREVSV--SEGRACAVVFD---CKFIETSAAVQHNVKELFEGIVRQVRL  169 (172)
T ss_dssp             TCGGGCCSCH--HHHHHHHHHHT---CEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             cccccccccH--HHHHHHHHHcC---CeEEEEeCCCCcCHHHHHHHHHHHHHH
Confidence            9864332211  12222333333   489999999999999999999887654

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=99.34  E-value=8.2e-13  Score=84.23  Aligned_cols=112  Identities=15%  Similarity=0.182  Sum_probs=68.2

Q ss_pred             CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH--HHHHHHHHH---hCCceEEEEe
Q 031293           30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMER---SQTKYQVVLT  104 (162)
Q Consensus        30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~--~~~~~~l~~---~~~~~ivv~n  104 (162)
                      ...+.++|+||....          ......+.   ..++++++++|.........  .++.+.+..   ...|++++.|
T Consensus        43 ~~~~~~~d~~g~~~~----------~~~~~~~~---~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~  109 (160)
T d1r8sa_          43 NISFTVWDVGGQDKI----------RPLWRHYF---QNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFAN  109 (160)
T ss_dssp             SCEEEEEECCCCGGG----------HHHHHHHT---TTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEE
T ss_pred             eEEEEEecCCCcccc----------hhhhhhhh---ccceeEEEEEEecChHHHHHHHHHHHHHHHhhcccCceEEEEee
Confidence            446889999998332          33334443   34589999999865322211  112222221   2578999999


Q ss_pred             ccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHh
Q 031293          105 KTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKI  156 (162)
Q Consensus       105 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~  156 (162)
                      |.|+.+.....+......  .........+++++||++|+|+++++++|.+.
T Consensus       110 k~d~~~~~~~~~i~~~~~--~~~~~~~~~~~~~~SAktg~gi~e~~~~l~~~  159 (160)
T d1r8sa_         110 KQDLPNAMNAAEITDKLG--LHSLRHRNWYIQATCATSGDGLYEGLDWLSNQ  159 (160)
T ss_dssp             CTTSTTCCCHHHHHHHTT--GGGCSSCCEEEEECBTTTTBTHHHHHHHHHHH
T ss_pred             cccccccccHHHHHHHHH--HHHHhhCCCEEEEeECCCCCCHHHHHHHHHhc
Confidence            999875443322211111  11122223589999999999999999999865

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=2.1e-12  Score=83.40  Aligned_cols=111  Identities=14%  Similarity=0.054  Sum_probs=67.9

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHH-HHHHH---H-HhCCceEEEEecc
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHE-LISLM---E-RSQTKYQVVLTKT  106 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~-~~~~l---~-~~~~~~ivv~nK~  106 (162)
                      ++.++|+||....           .....++.   .+++++++.|...+.+-.... +....   . ..+.|+++|.||+
T Consensus        51 ~l~i~D~~g~~~~-----------~~~~~~~~---~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~  116 (168)
T d2atva1          51 SMEILDTAGQEDT-----------IQREGHMR---WGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKA  116 (168)
T ss_dssp             EEEEEECCCCCCC-----------HHHHHHHH---HCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECG
T ss_pred             EEEEeeccccccc-----------ccchhhhc---ccccceeecccCCccchhhhhhhcccccccccccCcceeeeccch
Confidence            4889999998321           11223332   358999999987642222211 11111   1 2368999999999


Q ss_pred             CCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCC-HHHHHHHHHHhhhhhc
Q 031293          107 DTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAG-IRSLRTVLSKIARFAK  161 (162)
Q Consensus       107 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g-~~~l~~~i~~~~~~~k  161 (162)
                      |+.++..+..  +..++.....+   .+++.+||++|.| +++++..|.+.+...|
T Consensus       117 Dl~~~r~V~~--~e~~~~a~~~~---~~~~e~Saktg~gnV~e~F~~l~~~i~~~r  167 (168)
T d2atva1         117 DLDHSRQVST--EEGEKLATELA---CAFYECSACTGEGNITEIFYELCREVRRRR  167 (168)
T ss_dssp             GGGGGCCSCH--HHHHHHHHHHT---SEEEECCTTTCTTCHHHHHHHHHHHHHHHH
T ss_pred             hhhhhccCcH--HHHHHHHHHhC---CeEEEEccccCCcCHHHHHHHHHHHHHHhc
Confidence            9864322111  12233333333   4899999999985 9999999988765443

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=9.2e-14  Score=89.83  Aligned_cols=108  Identities=14%  Similarity=0.043  Sum_probs=67.4

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHH-HHHHHH-H---HhCCceEEEEecc
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDH-ELISLM-E---RSQTKYQVVLTKT  106 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~-~~~~~l-~---~~~~~~ivv~nK~  106 (162)
                      .+.++|++|....          ..+...+   ...+|++++|.|...+.+-... .++..+ +   ..++|+++|.||+
T Consensus        53 ~l~i~d~~g~~~~----------~~~~~~~---~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~  119 (167)
T d1xtqa1          53 HLQLVDTAGQDEY----------SIFPQTY---SIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKK  119 (167)
T ss_dssp             EEEEEECCCCCTT----------CCCCGGG---TSSCCEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSCCCEEEEEECT
T ss_pred             Eeeeccccccccc----------ccccchh---hhhhhhhhhhcccchhhhhhhhhhhhhhhhhcccccccceeeecccc
Confidence            4779999998332          1111222   2456999999998764322221 122222 2   2358999999999


Q ss_pred             CCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293          107 DTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  157 (162)
Q Consensus       107 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~  157 (162)
                      |+..+..+..  +..++.....+   .+++++||++|.|+++++..|.+.+
T Consensus       120 Dl~~~r~v~~--~~~~~~a~~~~---~~~~e~Sak~~~~v~~~f~~li~~~  165 (167)
T d1xtqa1         120 DLHMERVISY--EEGKALAESWN---AAFLESSAKENQTAVDVFRRIILEA  165 (167)
T ss_dssp             TCGGGCCSCH--HHHHHHHHHHT---CEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             ccccccchhH--HHHHHHHHHcC---CEEEEEecCCCCCHHHHHHHHHHHh
Confidence            9864322211  12233333333   3789999999999999999987765

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.33  E-value=1.4e-12  Score=92.92  Aligned_cols=65  Identities=22%  Similarity=0.253  Sum_probs=58.4

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCC
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV  109 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~  109 (162)
                      .++++|||||             ..+..+..++++.+|++++|+|+.+|+..++..+++.+...++|+++++||+|..
T Consensus        97 ~inliDtPGh-------------~dF~~ev~~al~~~D~allVVda~eGv~~qT~~~~~~a~~~~~p~i~viNKiDr~  161 (341)
T d1n0ua2          97 LINLIDSPGH-------------VDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDRA  161 (341)
T ss_dssp             EEEEECCCCC-------------CSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHTTCEEEEEEECHHHH
T ss_pred             EEEEEcCCCc-------------HHHHHHHHHHHhhcCceEEEEecccCcchhHHHHHHHHHHcCCCeEEEEECcccc
Confidence            3889999999             6667777777788899999999999999999999999988999999999999953

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=2.5e-12  Score=82.96  Aligned_cols=109  Identities=16%  Similarity=0.060  Sum_probs=68.0

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHHHHHH----hCCceEEEEecc
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKT  106 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~~l~~----~~~~~ivv~nK~  106 (162)
                      .+.++|++|....          ......+++   .+++++++.|...+.+-.. ..++..+.+    .++|+++|.||+
T Consensus        52 ~~~~~d~~g~~~~----------~~~~~~~~~---~~~~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~~p~ilvgnK~  118 (167)
T d1c1ya_          52 MLEILDTAGTEQF----------TAMRDLYMK---NGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKC  118 (167)
T ss_dssp             EEEEEEECSSCSS----------TTHHHHHHH---HCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECT
T ss_pred             EeccccccCcccc----------ccccccccc---ccceeEEeeeccchhhhHhHHHHHHHHHHhcCCCCCeEEEEEEec
Confidence            4889999998433          223334433   3499999999876422211 123332221    257899999999


Q ss_pred             CCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293          107 DTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  157 (162)
Q Consensus       107 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~  157 (162)
                      |+........  +..........  ..+++.+||++|.|+++++.+|.+.+
T Consensus       119 Dl~~~~~~~~--~~~~~~~~~~~--~~~~~e~Sak~g~gv~e~F~~l~~~i  165 (167)
T d1c1ya_         119 DLEDERVVGK--EQGQNLARQWC--NCAFLESSAKSKINVNEIFYDLVRQI  165 (167)
T ss_dssp             TCGGGCCSCH--HHHHHHHHHTT--SCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             Ccccccccch--hHHHHHHHHhC--CCEEEEEcCCCCcCHHHHHHHHHHHh
Confidence            9864332211  12222333322  25889999999999999999998754

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=1.3e-12  Score=84.84  Aligned_cols=108  Identities=17%  Similarity=0.091  Sum_probs=66.1

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCcc-HHHHHHHHHH---hCCceEEEEeccC
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPR-DHELISLMER---SQTKYQVVLTKTD  107 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~-~~~~~~~l~~---~~~~~ivv~nK~D  107 (162)
                      .+.++|++|....          ......+..   .+|+++++.|...+.+-. ...++..+..   .++|+++|.||+|
T Consensus        53 ~~~i~d~~g~~~~----------~~~~~~~~~---~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~D  119 (173)
T d2a5ja1          53 KLQIWDTAGQESF----------RSITRSYYR---GAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSD  119 (173)
T ss_dssp             EEEEECCTTGGGT----------SCCCHHHHT---TCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTT
T ss_pred             EEEeecccCccch----------hhHHHHHhh---ccCEEEEEEeecChHHHHhHHHHHHHHHHhCCCCCeEEEEecCCc
Confidence            4889999998332          222333332   349999999976532111 1223333332   3588999999999


Q ss_pred             CCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293          108 TVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  157 (162)
Q Consensus       108 l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~  157 (162)
                      +........  +.........+   .+++.+||++|.|+++++..|.+.+
T Consensus       120 ~~~~~~~~~--~~~~~~a~~~~---~~~~e~Sa~tg~~V~e~f~~i~~~i  164 (173)
T d2a5ja1         120 LESRRDVKR--EEGEAFAREHG---LIFMETSAKTACNVEEAFINTAKEI  164 (173)
T ss_dssp             CGGGCCSCH--HHHHHHHHHHT---CEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred             hhhhhhhHH--HHHHHHHHHcC---CEEEEecCCCCCCHHHHHHHHHHHH
Confidence            753221111  12222233332   4899999999999999999887754

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.30  E-value=5.3e-12  Score=81.12  Aligned_cols=136  Identities=15%  Similarity=0.120  Sum_probs=76.9

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT   77 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~   77 (162)
                      |+|++++..........++.+........   ...+.++|++|....         .......++.   .+|++++|.|.
T Consensus        18 Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~---~~d~~ilv~d~   85 (165)
T d1z06a1          18 LTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERF---------RKSMVQHYYR---NVHAVVFVYDM   85 (165)
T ss_dssp             HHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHH---------HTTTHHHHHT---TCCEEEEEEET
T ss_pred             HHHHHHhCCCCCccCcccccccceeeeeeeccceEEEEEeccCchhh---------ccccceeeec---CCCceEEEEEe
Confidence            45666544222223334444443333333   234889999997211         0112333443   45999999998


Q ss_pred             CCCCCccHH-HHHHHHHH----hCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCC---CCCHHHH
Q 031293           78 KWGVKPRDH-ELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKS---GAGIRSL  149 (162)
Q Consensus        78 ~~~~~~~~~-~~~~~l~~----~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~---~~g~~~l  149 (162)
                      ..+.+-... .++..+..    .++|+++|.||+|+..+..+..  +..++....++   .+++++||++   +.|++++
T Consensus        86 ~~~~s~~~~~~~~~~i~~~~~~~~~pi~lvgnK~Dl~~~~~v~~--~~~~~~~~~~~---~~~~e~SAkt~~~~~~V~e~  160 (165)
T d1z06a1          86 TNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPT--DLAQKFADTHS---MPLFETSAKNPNDNDHVEAI  160 (165)
T ss_dssp             TCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCH--HHHHHHHHHTT---CCEEECCSSSGGGGSCHHHH
T ss_pred             ehhhhhhhhhhhhHHHHhhccCCCCeEEEEeccccchhccchhH--HHHHHHHHHCC---CEEEEEecccCCcCcCHHHH
Confidence            764222221 23333332    2579999999999864322211  22334444444   4899999987   4589998


Q ss_pred             HHHH
Q 031293          150 RTVL  153 (162)
Q Consensus       150 ~~~i  153 (162)
                      +++|
T Consensus       161 F~~l  164 (165)
T d1z06a1         161 FMTL  164 (165)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            8876

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.27  E-value=2.5e-12  Score=83.17  Aligned_cols=109  Identities=15%  Similarity=0.092  Sum_probs=67.4

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHH-HHHHHHH---hCCceEEEEeccC
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHE-LISLMER---SQTKYQVVLTKTD  107 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~-~~~~l~~---~~~~~ivv~nK~D  107 (162)
                      ++.++|++|....          ..+...++.   .+|+++++.|...+.+-.... +......   ...|++++.||+|
T Consensus        53 ~l~i~d~~g~~~~----------~~~~~~~~~---~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~v~nk~d  119 (170)
T d1ek0a_          53 KFEIWDTAGQERF----------ASLAPMYYR---NAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKID  119 (170)
T ss_dssp             EEEEEEECCSGGG----------GGGHHHHHT---TCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGG
T ss_pred             cccccccCCchhH----------HHHHHHHHh---ccceEEEEEeCCcccchhhhhhhhhhhccccccccceeeeecccc
Confidence            5899999998221          233344443   349999999987643222222 2222222   2468999999999


Q ss_pred             CCCcH---HHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293          108 TVFPI---DVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR  158 (162)
Q Consensus       108 l~~~~---~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~  158 (162)
                      +.+..   .+..  +..++.....+   .+++.+||++|.|+++++..|.+.++
T Consensus       120 ~~~~~~~~~v~~--~~~~~~~~~~~---~~~~e~Sak~g~gV~e~F~~i~~~i~  168 (170)
T d1ek0a_         120 MLQEGGERKVAR--EEGEKLAEEKG---LLFFETSAKTGENVNDVFLGIGEKIP  168 (170)
T ss_dssp             GGGSSCCCCSCH--HHHHHHHHHHT---CEEEECCTTTCTTHHHHHHHHHTTSC
T ss_pred             cccccchhhhhH--HHHHHHHHHcC---CEEEEecCCCCcCHHHHHHHHHHHhc
Confidence            75321   1100  11222333332   48999999999999999999987654

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=9.1e-12  Score=81.98  Aligned_cols=111  Identities=12%  Similarity=0.023  Sum_probs=68.5

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH--HHHHHHHHH--hCCceEEEEeccC
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMER--SQTKYQVVLTKTD  107 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~--~~~~~~l~~--~~~~~ivv~nK~D  107 (162)
                      .+.++|+||....          ..+...+   .+.+|++++|.|....-+-..  .++...+..  .+.|+++|.||+|
T Consensus        52 ~l~i~D~~g~~~~----------~~~~~~~---~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~~~i~lvgnK~D  118 (191)
T d2ngra_          52 TLGLFDTAGQEDY----------DRLRPLS---YPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQID  118 (191)
T ss_dssp             EEEEEEECCSGGG----------TTTGGGG---CTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECGG
T ss_pred             eeeccccccchhh----------hhhhhhc---ccccceeecccccchHHHHHHHHHHHHHHHhhcCCCCceEEEecccc
Confidence            4889999998321          2223333   345699999999876421111  123333333  2689999999999


Q ss_pred             CCCcHHHHHHH----------HHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293          108 TVFPIDVARRA----------MQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  157 (162)
Q Consensus       108 l~~~~~~~~~~----------~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~  157 (162)
                      +.+........          +..++.....+  ..+++++||++|.|++++++.+...+
T Consensus       119 l~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~~~~~e~SAk~~~~V~e~f~~l~~~~  176 (191)
T d2ngra_         119 LRDDPSTIEKLAKNKQKPITPETAEKLARDLK--AVKYVECSALTQKGLKNVFDEAILAA  176 (191)
T ss_dssp             GGGCHHHHHHHHTTTCCCCCHHHHHHHHHHTT--CSCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             ccccchhhhhhhhcccccccHHHHHHHHHHcC--CCeEEEEeCCCCcCHHHHHHHHHHHH
Confidence            87543321110          12222333322  25899999999999999999887643

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.27  E-value=3.4e-12  Score=81.40  Aligned_cols=140  Identities=14%  Similarity=0.048  Sum_probs=80.0

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEeCCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCC
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG   80 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~   80 (162)
                      |+|+|++. ..+.+.+.++.+.....+ .+.+..++|++|....             ..........++.++++.|....
T Consensus        16 Lln~l~~~-~~~~~~~t~~~~~~~~~~-~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~d~~~~   80 (166)
T d2qtvb1          16 LLHMLKND-RLATLQPTWHPTSEELAI-GNIKFTTFDLGGHIQA-------------RRLWKDYFPEVNGIVFLVDAADP   80 (166)
T ss_dssp             HHHHHHHS-CCCCCCCCCSCEEEEECC-TTCCEEEEECCCSGGG-------------GGGGGGGCTTCSEEEEEEETTCG
T ss_pred             HHHHHhCC-CCCeeeceeeEeEEEecc-CCeeEEEEeeccchhh-------------hhhHhhhhhheeeeeeeccccch
Confidence            57888887 456566666655433222 1445889999987322             11122223445888999998754


Q ss_pred             CCccHH-HHHHHHH----HhCCceEEEEeccCCCCcHHHHHHHHHHHH-----HHHhcCCCCCCeEEeecCCCCCHHHHH
Q 031293           81 VKPRDH-ELISLME----RSQTKYQVVLTKTDTVFPIDVARRAMQIEE-----SLKANNSLVQPVMMVSSKSGAGIRSLR  150 (162)
Q Consensus        81 ~~~~~~-~~~~~l~----~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~~i~~~Sa~~~~g~~~l~  150 (162)
                      ...... .+.....    ..+.|++++.||.|+.......+..+.+..     ..........+++++||++|+|+++++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~i~i~~~k~d~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~Gv~e~~  160 (166)
T d2qtvb1          81 ERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAF  160 (166)
T ss_dssp             GGHHHHHHHHHHHHTCTTTTTCCEEEEEECTTSSSCCCHHHHHHHHTCSSCCC---CCSSCCEEEEEEBTTTTBSHHHHH
T ss_pred             hhhhhhhHHHHhhhhhhccCCceEEEEeccccccccCCHHHHHHHhhhhhhhHHHhhcccCCCEEEEeeCCCCCCHHHHH
Confidence            322111 1111111    135789999999998753333222222110     000011223468999999999999999


Q ss_pred             HHHHH
Q 031293          151 TVLSK  155 (162)
Q Consensus       151 ~~i~~  155 (162)
                      +||.+
T Consensus       161 ~~l~~  165 (166)
T d2qtvb1         161 QWLSQ  165 (166)
T ss_dssp             HHHTT
T ss_pred             HHHhC
Confidence            99864

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=99.24  E-value=4.9e-11  Score=80.91  Aligned_cols=118  Identities=20%  Similarity=0.217  Sum_probs=71.7

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHH-----HHHHhCCceEEEEecc
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELIS-----LMERSQTKYQVVLTKT  106 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~-----~l~~~~~~~ivv~nK~  106 (162)
                      .+.++|+||++...       .+........ .....+.+++++|+.............     .......|.++|+||+
T Consensus        96 ~~~~id~~g~~~~~-------~~~~~~~~~~-~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~~~~~~~ivvinK~  167 (244)
T d1yrba1          96 DYVLIDTPGQMETF-------LFHEFGVRLM-ENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKV  167 (244)
T ss_dssp             SEEEEECCSSHHHH-------HHSHHHHHHH-HTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCG
T ss_pred             ceeeeccccchhHH-------HHHHHHHHHH-hhccCceEEEEeccccccCchhHhhHHHHHHHHHHHhCCCceeeeecc
Confidence            59999999993320       0001111111 222347889999998766554433221     1234578999999999


Q ss_pred             CCCCcHHHHHHHHHHH------HHHH-----------------hcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293          107 DTVFPIDVARRAMQIE------ESLK-----------------ANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  157 (162)
Q Consensus       107 Dl~~~~~~~~~~~~~~------~~~~-----------------~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~  157 (162)
                      |+.+...........+      ..+.                 .......+++++||++|+|+++|+..|.+.+
T Consensus       168 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vSa~~geGi~~L~~~l~e~~  241 (244)
T d1yrba1         168 DLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHY  241 (244)
T ss_dssp             GGCCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            9997655433221110      0000                 0112346899999999999999999998853

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.23  E-value=4.4e-11  Score=79.53  Aligned_cols=140  Identities=22%  Similarity=0.319  Sum_probs=75.1

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEe----CCceEEEcCCCCcccccCHHHHHHHH-HHHHHHHhcCcccceeEEEe
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKL----GTKLCLVDLPGYGFAYAKEEVKDAWE-ELVKEYVSTRVSLKRVCLLI   75 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~----~~~~~ivDtpG~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~vi~vi   75 (162)
                      |+|+|++. ......  |+.+.+...+..    +..+.++|+||+.          .+. ..+..+.   ..++.+++|+
T Consensus        16 Ll~~l~~~-~~~~~~--~t~~~~~~~~~~~~~~~~~~~~~d~~g~~----------~~~~~~~~~~~---~~~~~~i~v~   79 (207)
T d2fh5b1          16 LFVRLLTG-QYRDTQ--TSITDSSAIYKVNNNRGNSLTLIDLPGHE----------SLRFQLLDRFK---SSARAVVFVV   79 (207)
T ss_dssp             HHHHHHHS-CCCCBC--CCCSCEEEEEECSSTTCCEEEEEECCCCH----------HHHHHHHHHHG---GGEEEEEEEE
T ss_pred             HHHHHHcC-CCCccc--CCeeEEEEEEEEeeeeeeeeeeeeccccc----------cccchhhhhhh---hhccccceEE
Confidence            57888876 333333  444444444433    3458999999981          111 2233332   4568999999


Q ss_pred             ecCCCCC---ccHHHHHHHHHH-----hCCceEEEEeccCCCCcHHHHHHHHHHHHHHHh--------------------
Q 031293           76 DTKWGVK---PRDHELISLMER-----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKA--------------------  127 (162)
Q Consensus        76 d~~~~~~---~~~~~~~~~l~~-----~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~--------------------  127 (162)
                      |+.....   .....+...+..     ..+|+++|+||+|+.+....+...+.+.+.+..                    
T Consensus        80 D~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~a~~~~~i~~~l~~e~~~~~~~~~~~~~~~~~~~~~~~  159 (207)
T d2fh5b1          80 DSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPA  159 (207)
T ss_dssp             ETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC------------CC
T ss_pred             EcccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCCCCCHHHHHHHHHHHhhhhhhccccccceeehhhhhhh
Confidence            9875321   111222233321     247899999999997543333333333322211                    


Q ss_pred             -c-----------CCCCCCeEEeecCCCCC------HHHHHHHHHHh
Q 031293          128 -N-----------NSLVQPVMMVSSKSGAG------IRSLRTVLSKI  156 (162)
Q Consensus       128 -~-----------~~~~~~i~~~Sa~~~~g------~~~l~~~i~~~  156 (162)
                       .           ......++.+|++.|.|      ++++.+||.+.
T Consensus       160 ~~~~~~~~~~~~~~~~~v~~~~~S~~~~~~~~~~~~i~~~~~wl~~~  206 (207)
T d2fh5b1         160 QLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI  206 (207)
T ss_dssp             CSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred             hhcccchhhhHHhccCCcEEEEeeecCCCcccccccHHHHHHHHHHh
Confidence             0           00112477889999887      77888887754

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=99.22  E-value=1.4e-11  Score=78.89  Aligned_cols=140  Identities=16%  Similarity=0.124  Sum_probs=79.8

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEe-CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCC
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKL-GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW   79 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~-~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~   79 (162)
                      |+|++++. ....+.+..+.+.  ..... +..+.++|.||....             ..........++.+++++|...
T Consensus        21 Li~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~   84 (169)
T d1upta_          21 ILYRLQVG-EVVTTIPTIGFNV--ETVTYKNLKFQVWDLGGLTSI-------------RPYWRCYYSNTDAVIYVVDSCD   84 (169)
T ss_dssp             HHHHHHHS-SCCCCCCCSSEEE--EEEEETTEEEEEEEECCCGGG-------------GGGGGGGCTTCSEEEEEEETTC
T ss_pred             HHHHHhCC-CCcceecccceee--eeeccCceEEEEeeccccccc-------------cccchhhhhhhhhhhhhhhhhh
Confidence            57788777 3333333332221  11222 445889999988332             2222233345588888888765


Q ss_pred             CCCccHHH--HHHHHH---HhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHH
Q 031293           80 GVKPRDHE--LISLME---RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLS  154 (162)
Q Consensus        80 ~~~~~~~~--~~~~l~---~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~  154 (162)
                      ........  +.....   ....|++++.||.|+.......+.......  ........+++++||++|+|+++++++|.
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~i~iv~nk~Dl~~~~~~~~i~~~~~~--~~~~~~~~~~~~~SA~~g~gv~e~~~~l~  162 (169)
T d1upta_          85 RDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGL--PALKDRKWQIFKTSATKGTGLDEAMEWLV  162 (169)
T ss_dssp             CTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTG--GGCTTSCEEEEECCTTTCTTHHHHHHHHH
T ss_pred             cchhhhccchhhhhhhhhccccceEEEEEeeccccccccHHHHHHHHHH--HHHhcCCCEEEEEeCCCCCCHHHHHHHHH
Confidence            33222211  112221   224789999999999854433222222111  11122346899999999999999999998


Q ss_pred             Hhhh
Q 031293          155 KIAR  158 (162)
Q Consensus       155 ~~~~  158 (162)
                      +.++
T Consensus       163 ~~l~  166 (169)
T d1upta_         163 ETLK  166 (169)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8764

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.19  E-value=1.5e-10  Score=76.69  Aligned_cols=96  Identities=18%  Similarity=0.198  Sum_probs=56.9

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT   77 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~   77 (162)
                      |+|+|++.. .     .|++|++......   +..+.++||||+....      ..   ....+......++.+++++|+
T Consensus        19 Lln~l~~~~-~-----~~~tt~~~~~~~~~~~~~~~~l~D~~g~~~~~------~~---~~~~~~~~~~~~~~~i~~vd~   83 (209)
T d1nrjb_          19 LLTLLTTDS-V-----RPTVVSQEPLSAADYDGSGVTLVDFPGHVKLR------YK---LSDYLKTRAKFVKGLIFMVDS   83 (209)
T ss_dssp             HHHHHHHSS-C-----CCBCCCSSCEEETTGGGSSCEEEECCCCGGGT------HH---HHHHHHHHGGGEEEEEEEEET
T ss_pred             HHHHHhCCC-C-----CCeEEecceEEEEEeCCeEEEEEecccccchh------hH---HHHHHHHHhhhccccceEEEE
Confidence            578888772 2     3556665554444   5569999999984321      11   222233334455888999998


Q ss_pred             CCCCCccH--HHHH-H------HHHHhCCceEEEEeccCCCCc
Q 031293           78 KWGVKPRD--HELI-S------LMERSQTKYQVVLTKTDTVFP  111 (162)
Q Consensus        78 ~~~~~~~~--~~~~-~------~l~~~~~~~ivv~nK~Dl~~~  111 (162)
                      ........  .+++ +      .....++|+++|+||+|+...
T Consensus        84 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~NK~D~~~~  126 (209)
T d1nrjb_          84 TVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTA  126 (209)
T ss_dssp             TSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC
T ss_pred             ecccccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeeccccc
Confidence            65432211  1111 1      122246899999999998753

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=99.15  E-value=6.1e-11  Score=82.20  Aligned_cols=90  Identities=14%  Similarity=0.219  Sum_probs=67.9

Q ss_pred             HHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEee
Q 031293           60 EYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVS  139 (162)
Q Consensus        60 ~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S  139 (162)
                      +.......+|+|++|+||+.+++..+..+.++++  ++|.|+|+||+|+++.....++.    +.+...+   .+.+++|
T Consensus         8 ~i~~~i~~~DvIl~V~DaR~P~ss~~~~l~~~~~--~Kp~IlVlNK~DLv~~~~~~~w~----~~f~~~~---~~~i~is   78 (273)
T d1puja_           8 EVTEKLKLIDIVYELVDARIPMSSRNPMIEDILK--NKPRIMLLNKADKADAAVTQQWK----EHFENQG---IRSLSIN   78 (273)
T ss_dssp             HHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHCS--SSCEEEEEECGGGSCHHHHHHHH----HHHHTTT---CCEEECC
T ss_pred             HHHHHHHhCCEEEEEEECCCCCCCCCHHHHHHHc--CCCeEEEEECccCCchHHHHHHH----HHHHhcC---Cccceee
Confidence            3333455679999999999999988877766664  78999999999999776554433    3343332   4889999


Q ss_pred             cCCCCCHHHHHHHHHHhhh
Q 031293          140 SKSGAGIRSLRTVLSKIAR  158 (162)
Q Consensus       140 a~~~~g~~~l~~~i~~~~~  158 (162)
                      +.++.|..++...+.+.++
T Consensus        79 a~~~~~~~~~~~~~~~~l~   97 (273)
T d1puja_          79 SVNGQGLNQIVPASKEILQ   97 (273)
T ss_dssp             TTTCTTGGGHHHHHHHHHH
T ss_pred             cccCCCccccchhhhhhhh
Confidence            9999999888877766543

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.13  E-value=1.2e-10  Score=80.08  Aligned_cols=106  Identities=18%  Similarity=0.133  Sum_probs=71.9

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT   77 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~   77 (162)
                      |+|+|+|+ ..+.++..+++|++...+..   +.++.++||||+++.....   +.....+..+. .....+++++|++.
T Consensus        48 liN~ilg~-~~~~vs~~~~~T~~~~~~~~~~~g~~i~viDTPGl~~~~~~~---~~~~~~i~~~~-~~~~~~~il~v~~~  122 (257)
T d1h65a_          48 TVNSIIGE-RVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYIN---DMALNIIKSFL-LDKTIDVLLYVDRL  122 (257)
T ss_dssp             HHHHHHTS-CCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEEC---HHHHHHHHHHT-TTCEECEEEEEEES
T ss_pred             HHHHHhCC-CceeecCCCCcceeEEEEEEEeccEEEEEEeeecccCCcchH---HHHHHHHHHHH-hcCCCCeEEEEEEC
Confidence            58999999 57889999999986655433   5569999999996653221   11122233332 33456888888887


Q ss_pred             CC-CCCccHHHHHHHHHHh-----CCceEEEEeccCCCCc
Q 031293           78 KW-GVKPRDHELISLMERS-----QTKYQVVLTKTDTVFP  111 (162)
Q Consensus        78 ~~-~~~~~~~~~~~~l~~~-----~~~~ivv~nK~Dl~~~  111 (162)
                      .. .++..+...+..+...     ..++++|+||+|...+
T Consensus       123 ~~~r~~~~~~~~l~~l~~~fg~~~~~~~ivv~t~~D~~~~  162 (257)
T d1h65a_         123 DAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPP  162 (257)
T ss_dssp             SCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCG
T ss_pred             CCCCCCHHHHHHHHHHHHHcchhhhhCEEEEEECcccCCc
Confidence            54 4667676666665532     2568999999998853

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.12  E-value=6.5e-11  Score=77.09  Aligned_cols=111  Identities=14%  Similarity=0.065  Sum_probs=66.1

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCC--ccHHHHHHHHHH--hCCceEEEEeccC
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVK--PRDHELISLMER--SQTKYQVVLTKTD  107 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~--~~~~~~~~~l~~--~~~~~ivv~nK~D  107 (162)
                      .+.++|++|....          ......+   .+.+|++++|.|.....+  .....+...+..  .+.|+++|.||+|
T Consensus        51 ~~~i~D~~g~~~~----------~~~~~~~---~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~~~iilVgnK~D  117 (179)
T d1m7ba_          51 ELSLWDTSGSPYY----------DNVRPLS---YPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSD  117 (179)
T ss_dssp             EEEEEEECCSGGG----------TTTGGGG---CTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGG
T ss_pred             eeccccccccccc----------cccccch---hhhhhhhheeeecccCCCHHHHHHHHHHHHhccCCcceEEEEEeccc
Confidence            4779999998322          1112222   345699999999875421  111122233332  3689999999999


Q ss_pred             CCCcHHHHHH----------HHHHHHHHHhcCCCCCCeEEeecCCCC-CHHHHHHHHHHhh
Q 031293          108 TVFPIDVARR----------AMQIEESLKANNSLVQPVMMVSSKSGA-GIRSLRTVLSKIA  157 (162)
Q Consensus       108 l~~~~~~~~~----------~~~~~~~~~~~~~~~~~i~~~Sa~~~~-g~~~l~~~i~~~~  157 (162)
                      +.........          .+...+.....+.  .+++.+||++|. |++++++.+...+
T Consensus       118 l~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~~--~~y~E~SAk~~~n~i~~~F~~~~~~~  176 (179)
T d1m7ba_         118 LRTDVSTLVELSNHRQTPVSYDQGANMAKQIGA--ATYIECSALQSENSVRDIFHVATLAC  176 (179)
T ss_dssp             GGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTC--SEEEECBTTTBHHHHHHHHHHHHHHH
T ss_pred             ccccchhhHHHhhhhcCcchHHHHHHHHHHhCC--CeEEEEeCCCCCcCHHHHHHHHHHHH
Confidence            8643221100          0122223333322  478999999998 6999999887654

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=1.3e-10  Score=75.44  Aligned_cols=106  Identities=6%  Similarity=-0.047  Sum_probs=62.8

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHHHHHH------hCCceEEEEe
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER------SQTKYQVVLT  104 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~~l~~------~~~~~ivv~n  104 (162)
                      .+.++||+|...           ..    +++   .+|++++|.|....-+-.. ..+..++..      ..+|+++|.|
T Consensus        53 ~l~i~Dt~g~~~-----------~~----~~~---~ad~~ilVfd~~~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~  114 (175)
T d2bmja1          53 LVLIREEAGAPD-----------AK----FSG---WADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGT  114 (175)
T ss_dssp             EEEEEECSSCCC-----------HH----HHH---HCSEEEEEEETTCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEE
T ss_pred             EEEEeecccccc-----------cc----ccc---ccceeEEEeecccchhhhhhHHHHHHHHHHhhcccCCccEEEEee
Confidence            478999999821           12    222   3499999999875421111 112333322      2468999999


Q ss_pred             ccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293          105 KTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  157 (162)
Q Consensus       105 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~  157 (162)
                      |.|+.......-..+..++......  ..+++++||++|.|+++++..+.+.+
T Consensus       115 k~d~d~~~~~~v~~~~~~~~~~~~~--~~~~~e~SAk~~~~v~~~F~~l~~~i  165 (175)
T d2bmja1         115 QDRISASSPRVVGDARARALCADMK--RCSYYETCATYGLNVDRVFQEVAQKV  165 (175)
T ss_dssp             CTTCCSSSCCCSCHHHHHHHHHTST--TEEEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred             ecCcchhhhcchhHHHHHHHHHHhC--CCeEEEeCCCCCcCHHHHHHHHHHHH
Confidence            9887432111000012222333221  24789999999999999999887654

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.06  E-value=1.6e-10  Score=74.96  Aligned_cols=138  Identities=15%  Similarity=0.081  Sum_probs=73.9

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEeCCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCC
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG   80 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~   80 (162)
                      |+|+|++. ....+.+..+.+.....+ .+.....+|++|.+..             ...........+.++++.|....
T Consensus        29 Ll~~l~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~d~~d~   93 (186)
T d1f6ba_          29 LLHMLKDD-RLGQHVPTLHPTSEELTI-AGMTFTTFDLGGHIQA-------------RRVWKNYLPAINGIVFLVDCADH   93 (186)
T ss_dssp             HHHHHSCC-------CCCCCSCEEEEE-TTEEEEEEEECC-----------------CCGGGGGGGGCSEEEEEEETTCG
T ss_pred             HHHHHhCC-CCcceecccccceeEEEe-cccccccccccchhhh-------------hhHHhhhhcccceeeeeeeccCc
Confidence            57888887 344444444444332222 1334778888887332             11112223345888888887653


Q ss_pred             CCccH-HHHHHHHH----HhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhc--------------CCCCCCeEEeecC
Q 031293           81 VKPRD-HELISLME----RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKAN--------------NSLVQPVMMVSSK  141 (162)
Q Consensus        81 ~~~~~-~~~~~~l~----~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~--------------~~~~~~i~~~Sa~  141 (162)
                      ..... ........    ..++|++++.||.|+.........    .+.+...              .....+++++||+
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~K~D~~~~~~~~~i----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~  169 (186)
T d1f6ba_          94 ERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERL----REMFGLYGQTTGKGSVSLKELNARPLEVFMCSVL  169 (186)
T ss_dssp             GGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHH----HHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTT
T ss_pred             cchHHHHHHHHHhhcccccCCCceEEEEeccCccccCCHHHH----HHHHhhcccchhhhhhhHHHhhcCCCEEEEEeCC
Confidence            21111 11111111    126899999999998643333222    2222211              1112468899999


Q ss_pred             CCCCHHHHHHHHHHhh
Q 031293          142 SGAGIRSLRTVLSKIA  157 (162)
Q Consensus       142 ~~~g~~~l~~~i~~~~  157 (162)
                      +|+|++++++||.+.+
T Consensus       170 tg~Gi~e~~~~l~~~i  185 (186)
T d1f6ba_         170 KRQGYGEGFRWMAQYI  185 (186)
T ss_dssp             TTBSHHHHHHHHHTTC
T ss_pred             CCCCHHHHHHHHHHhh
Confidence            9999999999998754

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.93  E-value=4.5e-09  Score=70.19  Aligned_cols=85  Identities=20%  Similarity=0.264  Sum_probs=60.0

Q ss_pred             cccceeEEEeecCCC-CCccHH-HHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCC
Q 031293           66 VSLKRVCLLIDTKWG-VKPRDH-ELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSG  143 (162)
Q Consensus        66 ~~~~~vi~vid~~~~-~~~~~~-~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~  143 (162)
                      .++|.+++|+.+.+| +..... .++......++|.++|+||+|+.++.+.....+..    ..+. ...+++.+|++++
T Consensus         9 ANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~~~i~pvIvlnK~DL~~~~~~~~~~~~~----~~~~-~~~~v~~vSa~~~   83 (225)
T d1u0la2           9 ANVDQVILVVTVKMPETSTYIIDKFLVLAEKNELETVMVINKMDLYDEDDLRKVRELE----EIYS-GLYPIVKTSAKTG   83 (225)
T ss_dssp             ESCCEEEEEECSSTTCCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHH----HHHT-TTSCEEECCTTTC
T ss_pred             ccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHcCCCEEEEEeCcccCCHHHHHHHHHhh----cccc-cceeEEEeccccc
Confidence            467999999988764 333322 24555667799999999999999766554333222    2121 1258999999999


Q ss_pred             CCHHHHHHHHHH
Q 031293          144 AGIRSLRTVLSK  155 (162)
Q Consensus       144 ~g~~~l~~~i~~  155 (162)
                      .|+++|..++..
T Consensus        84 ~g~~~L~~~l~~   95 (225)
T d1u0la2          84 MGIEELKEYLKG   95 (225)
T ss_dssp             TTHHHHHHHHSS
T ss_pred             hhHhhHHHHhcC
Confidence            999999998854

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.82  E-value=2.2e-09  Score=71.96  Aligned_cols=87  Identities=14%  Similarity=0.173  Sum_probs=62.4

Q ss_pred             cccceeEEEeecCCC-CCccHHH-HHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCC
Q 031293           66 VSLKRVCLLIDTKWG-VKPRDHE-LISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSG  143 (162)
Q Consensus        66 ~~~~~vi~vid~~~~-~~~~~~~-~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~  143 (162)
                      .++|.+++|+.+.++ +.....+ ++......+++.++|+||+|+.+..+....++.+.+.....+   .+++.+|+.++
T Consensus         9 ANiD~~~iV~s~~~P~~~~~~idR~Lv~a~~~~i~pvIvlnK~DL~~~~~~~~~~~~~~~~y~~~g---~~v~~~Sa~~~   85 (231)
T d1t9ha2           9 CNVDQAVLVFSAVQPSFSTALLDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIG---YDVYLTSSKDQ   85 (231)
T ss_dssp             ECCCEEEEEEESTTTTCCHHHHHHHHHHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHT---CCEEECCHHHH
T ss_pred             cccCEEEEEEECCCCCCCHHHHHHHHHHHHHcCCCEEEEEecccccccHHHHHHHHHHHHHHhhcc---ccceeeecCCh
Confidence            467999999988654 3333322 445556678999999999999987666555555544444333   49999999999


Q ss_pred             CCHHHHHHHHHH
Q 031293          144 AGIRSLRTVLSK  155 (162)
Q Consensus       144 ~g~~~l~~~i~~  155 (162)
                      .|+++|..++..
T Consensus        86 ~gl~~L~~~l~~   97 (231)
T d1t9ha2          86 DSLADIIPHFQD   97 (231)
T ss_dssp             TTCTTTGGGGTT
T ss_pred             hHHHHHHHhhcc
Confidence            999998877653

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=98.70  E-value=1.2e-08  Score=72.06  Aligned_cols=86  Identities=16%  Similarity=0.108  Sum_probs=55.0

Q ss_pred             cceeEEEeecCCCC--CccHHHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhc----CCCCCCeEEeecC
Q 031293           68 LKRVCLLIDTKWGV--KPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKAN----NSLVQPVMMVSSK  141 (162)
Q Consensus        68 ~~~vi~vid~~~~~--~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~----~~~~~~i~~~Sa~  141 (162)
                      +|.+++|.++..+-  ...-.-++      .++=++|+||+|...........+.++..+...    ....++++.+||.
T Consensus       168 aD~~l~v~~P~~Gd~iq~~k~gi~------e~aDi~VvNKaD~~~~~~~~~~~~~~~~al~~~~~~~~~w~p~V~~~SA~  241 (327)
T d2p67a1         168 VDCFISLQIAGGGDDLQGIKKGLM------EVADLIVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSAL  241 (327)
T ss_dssp             CSEEEEEECC------CCCCHHHH------HHCSEEEECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGG
T ss_pred             cceEEEEecCCCchhhhhhchhhh------ccccEEEEEeecccchHHHHHHHHHHHHHhhhcccCCCCCcceeEEEEee
Confidence            58888888765431  11111111      234588899999987665555555555544422    2223589999999


Q ss_pred             CCCCHHHHHHHHHHhhhh
Q 031293          142 SGAGIRSLRTVLSKIARF  159 (162)
Q Consensus       142 ~~~g~~~l~~~i~~~~~~  159 (162)
                      +|+|+++|++.|.+..++
T Consensus       242 ~g~Gi~eL~~~I~~~~~~  259 (327)
T d2p67a1         242 EKRGIDEIWHAIIDFKTA  259 (327)
T ss_dssp             GTBSHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHH
Confidence            999999999999876654

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.65  E-value=6.5e-08  Score=67.35  Aligned_cols=78  Identities=17%  Similarity=0.207  Sum_probs=52.7

Q ss_pred             ceEEEcCCCCccccc---CHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHHHHHHhCCceEEEEeccC
Q 031293           32 KLCLVDLPGYGFAYA---KEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERSQTKYQVVLTKTD  107 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~~l~~~~~~~ivv~nK~D  107 (162)
                      .++++||||++....   ...........+..|+....  +.++++.++..++.... ..+.+.+.....++++|+||+|
T Consensus       126 ~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~--~~il~v~~a~~~~~~~~~~~~~~~~~~~~~r~i~Vltk~D  203 (299)
T d2akab1         126 NLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKEN--CLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLD  203 (299)
T ss_dssp             SEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTT--EEEEEEEESSSCGGGCHHHHHHHHHCTTCSSEEEEEECGG
T ss_pred             CeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCcc--ceeeeecccccchhhhHHHHHHHHhCcCCCceeeEEeccc
Confidence            489999999976532   22233444566677765542  56777888877665554 3455566556678999999999


Q ss_pred             CCCc
Q 031293          108 TVFP  111 (162)
Q Consensus       108 l~~~  111 (162)
                      ..++
T Consensus       204 ~~~~  207 (299)
T d2akab1         204 LMDE  207 (299)
T ss_dssp             GSCT
T ss_pred             cccc
Confidence            9854

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.64  E-value=2.7e-08  Score=65.05  Aligned_cols=115  Identities=14%  Similarity=0.096  Sum_probs=65.4

Q ss_pred             CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCC--------ccHHHHHHH----HH---H
Q 031293           30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVK--------PRDHELISL----ME---R   94 (162)
Q Consensus        30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~--------~~~~~~~~~----l~---~   94 (162)
                      +..+.++|++|+             +.+........+.++.++++.+......        ....+....    +.   .
T Consensus        43 ~~~~~~~D~~gq-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  109 (200)
T d1zcba2          43 NVPFKMVDVGGQ-------------RSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVF  109 (200)
T ss_dssp             TEEEEEEEECC--------------------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGG
T ss_pred             eeeeeeecccce-------------eeecccccccccccceeEEEEEcCCcceeeeecccchhhhHHHHHHHHHhhChhh
Confidence            445999999999             4433443344456688888888765321        111122222    22   1


Q ss_pred             hCCceEEEEeccCCCCc------------------HHHHHHHHHHHHHHHhc----CCCCCCeEEeecCCCCCHHHHHHH
Q 031293           95 SQTKYQVVLTKTDTVFP------------------IDVARRAMQIEESLKAN----NSLVQPVMMVSSKSGAGIRSLRTV  152 (162)
Q Consensus        95 ~~~~~ivv~nK~Dl~~~------------------~~~~~~~~~~~~~~~~~----~~~~~~i~~~Sa~~~~g~~~l~~~  152 (162)
                      .+.|+++++||+|+..+                  .......+.+.+.+...    ..+...++.+||+++.++++++..
T Consensus       110 ~~~piilv~NK~Dl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~iy~~~TsA~d~~ni~~vf~~  189 (200)
T d1zcba2         110 SNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRD  189 (200)
T ss_dssp             TTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHH
T ss_pred             cCceEEEEeccchhhhhhccccHHHHhCccccCCcchHHHHHHHHHHHHHHhccCCCCCceEEEEeeeeCcHHHHHHHHH
Confidence            36899999999997521                  11223334444444321    122234557899999999999999


Q ss_pred             HHHhh
Q 031293          153 LSKIA  157 (162)
Q Consensus       153 i~~~~  157 (162)
                      +.+.+
T Consensus       190 v~d~i  194 (200)
T d1zcba2         190 VKDTI  194 (200)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            87754

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=98.59  E-value=4.7e-07  Score=63.65  Aligned_cols=109  Identities=19%  Similarity=0.158  Sum_probs=63.9

Q ss_pred             CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCCC
Q 031293           31 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF  110 (162)
Q Consensus        31 ~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~  110 (162)
                      ..+.++.|.|.|..          +..+..+      +|..++|..+..+-   +.+... ..-..+.=++|+||+|+.+
T Consensus       144 ~d~iiiETVG~gq~----------e~~~~~~------~D~~v~v~~p~~GD---~iQ~~k-~gilE~aDi~vvNKaD~~~  203 (323)
T d2qm8a1         144 FDVILVETVGVGQS----------ETAVADL------TDFFLVLMLPGAGD---ELQGIK-KGIFELADMIAVNKADDGD  203 (323)
T ss_dssp             CCEEEEEECSSSSC----------HHHHHTT------SSEEEEEECSCC---------CC-TTHHHHCSEEEEECCSTTC
T ss_pred             CCeEEEeehhhhhh----------hhhhhcc------cceEEEEeeccchh---hhhhhh-hhHhhhhheeeEecccccc
Confidence            35777788777654          2222222      48888888876541   111100 0001234489999999876


Q ss_pred             cHHHH-HHHHHHHHHHHhc----CCCCCCeEEeecCCCCCHHHHHHHHHHhhhh
Q 031293          111 PIDVA-RRAMQIEESLKAN----NSLVQPVMMVSSKSGAGIRSLRTVLSKIARF  159 (162)
Q Consensus       111 ~~~~~-~~~~~~~~~~~~~----~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~~  159 (162)
                      ..... .....++..+...    .....+++.+||++|.|+++++++|.+..++
T Consensus       204 ~~~~~~~~~~~~~~~l~~~~~~~~~~~p~V~~~Sa~~g~Gi~el~~~I~~~~~~  257 (323)
T d2qm8a1         204 GERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRSK  257 (323)
T ss_dssp             CHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHhhcccccccCCCCceEEEEecCCCCHHHHHHHHHHHHHH
Confidence            55433 2222333333311    1234689999999999999999999876543

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=98.50  E-value=2.4e-07  Score=64.60  Aligned_cols=78  Identities=18%  Similarity=0.244  Sum_probs=47.1

Q ss_pred             ceEEEcCCCCcccccCH---HHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCc-cHHHHHHHHHHhCCceEEEEeccC
Q 031293           32 KLCLVDLPGYGFAYAKE---EVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKP-RDHELISLMERSQTKYQVVLTKTD  107 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~-~~~~~~~~l~~~~~~~ivv~nK~D  107 (162)
                      .+.+|||||++......   .........+..|+....  ..++++.++..++.. ....+.+.+.....++++|+||+|
T Consensus       132 ~l~iiDtPG~~~~~~~~~~~~~~~~~~~~~~~yi~~~~--~~il~v~~~~~~~~~~~~~~~~~~~~~~~~r~i~Vitk~D  209 (306)
T d1jwyb_         132 NLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQN--AIIVAVTPANTDLANSDALQLAKEVDPEGKRTIGVITKLD  209 (306)
T ss_dssp             SEEEEECCCCC---------CSHHHHHHHHHHHHHSTT--EEEEEEEESSSCSTTCSHHHHHHHHCSSCSSEEEEEECTT
T ss_pred             CceEecCCCccccccCCcchhHHHHHHHHHHHHHhCCC--ceeEEeecccccccccHHHHHHHHhCcCCCeEEEEEeccc
Confidence            58899999997653221   123334556777766542  345556676655433 334455666555678999999999


Q ss_pred             CCCc
Q 031293          108 TVFP  111 (162)
Q Consensus       108 l~~~  111 (162)
                      ....
T Consensus       210 ~~~~  213 (306)
T d1jwyb_         210 LMDK  213 (306)
T ss_dssp             SSCS
T ss_pred             cccc
Confidence            8743

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.39  E-value=3.3e-07  Score=59.36  Aligned_cols=115  Identities=10%  Similarity=0.042  Sum_probs=65.6

Q ss_pred             CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCC--------CccHHHHH----HHHH---H
Q 031293           30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV--------KPRDHELI----SLME---R   94 (162)
Q Consensus        30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~--------~~~~~~~~----~~l~---~   94 (162)
                      ..++.++||+|...          +......|   .+.+++++++.|.....        .....+..    ..+.   .
T Consensus        41 ~~~~~i~D~~Gq~~----------~~~~~~~~---~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~  107 (195)
T d1svsa1          41 DLHFKMFDVGGQRS----------ERKKWIHC---FEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWF  107 (195)
T ss_dssp             TEEEEEEEECCSGG----------GGGGGGGG---CTTCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGG
T ss_pred             eeeeeeeccccccc----------cccchhhc---ccCCceeeeEEeecccchHHHHhhhhHHHHHHHHHHHHHhccccc
Confidence            44589999999822          12333344   34458899998864321        01111111    2222   1


Q ss_pred             hCCceEEEEeccCCCCc-----------------HHHHHHHHHHHHHHHh----cCCCCCCeEEeecCCCCCHHHHHHHH
Q 031293           95 SQTKYQVVLTKTDTVFP-----------------IDVARRAMQIEESLKA----NNSLVQPVMMVSSKSGAGIRSLRTVL  153 (162)
Q Consensus        95 ~~~~~ivv~nK~Dl~~~-----------------~~~~~~~~~~~~~~~~----~~~~~~~i~~~Sa~~~~g~~~l~~~i  153 (162)
                      .+.|++++.||+|+...                 ....+....+...+..    ...+.+.++++||+++.|+++++..+
T Consensus       108 ~~~~~~lv~Nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~tSA~~~~nv~~~F~~v  187 (195)
T d1svsa1         108 TDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAV  187 (195)
T ss_dssp             TTSEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCCEEEEeccchhhhhhccchHHHHHhhhhcCcccHHHHHHHHHHHHHHHhcccCCCcceeEEEEeECCHhHHHHHHHH
Confidence            25799999999986311                 1112222233333322    12223456679999999999999999


Q ss_pred             HHhh
Q 031293          154 SKIA  157 (162)
Q Consensus       154 ~~~~  157 (162)
                      .+.+
T Consensus       188 ~~~i  191 (195)
T d1svsa1         188 TDVI  191 (195)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8755

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.29  E-value=2.5e-07  Score=60.13  Aligned_cols=116  Identities=9%  Similarity=0.005  Sum_probs=66.4

Q ss_pred             CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCC--------ccH----HHHHHHHHH---
Q 031293           30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVK--------PRD----HELISLMER---   94 (162)
Q Consensus        30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~--------~~~----~~~~~~l~~---   94 (162)
                      ...+.++|++|+...          ......+   .+.++.+++++|......        ...    ..+...+..   
T Consensus        44 ~~~~~~~d~~g~~~~----------~~~~~~~---~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~  110 (200)
T d2bcjq2          44 SVIFRMVDVGGQRSE----------RRKWIHC---FENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWF  110 (200)
T ss_dssp             SCEEEEEECCCSTTG----------GGGGGGG---CSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCGGG
T ss_pred             ceeeeeccccccccc----------ccccccc---ccccceeeEeeeccchhhhhhhhccccchHHHHHHHHHHHhhhhc
Confidence            446899999998221          2222333   345588899988754211        111    112233332   


Q ss_pred             hCCceEEEEeccCCCCcHH------------------HHHHHHHHHHHHHhc---CCCCCCeEEeecCCCCCHHHHHHHH
Q 031293           95 SQTKYQVVLTKTDTVFPID------------------VARRAMQIEESLKAN---NSLVQPVMMVSSKSGAGIRSLRTVL  153 (162)
Q Consensus        95 ~~~~~ivv~nK~Dl~~~~~------------------~~~~~~~~~~~~~~~---~~~~~~i~~~Sa~~~~g~~~l~~~i  153 (162)
                      .+.|++++.||.|+.....                  .....+.+...+...   ..+...++++||++|.|+++++..+
T Consensus       111 ~~~~~~~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~tSAk~~~ni~~vF~~i  190 (200)
T d2bcjq2         111 QNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAV  190 (200)
T ss_dssp             SSSEEEEEEECHHHHHHHTTTSCHHHHSTTCCSCSSCHHHHHHHHHHHHHTTCSCTTSCEEEEECCTTCHHHHHHHHHHH
T ss_pred             cCccEEEecchhhhhhhcccchHHHHhcccccCCchhHHHHHHHHHHHHHHhcccCCCceEEEEeEEEcCHhHHHHHHHH
Confidence            2688999999999742111                  111112222222211   1223446789999999999999999


Q ss_pred             HHhhh
Q 031293          154 SKIAR  158 (162)
Q Consensus       154 ~~~~~  158 (162)
                      .+.+.
T Consensus       191 ~~~I~  195 (200)
T d2bcjq2         191 KDTIL  195 (200)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            87653

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.08  E-value=4.1e-07  Score=62.55  Aligned_cols=43  Identities=33%  Similarity=0.727  Sum_probs=26.7

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEeCCceEEEcCCCCccc
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFA   44 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~ivDtpG~~~~   44 (162)
                      |+|+|.++ ..+.+++.||+|++......+.++.++||||.-..
T Consensus       128 liN~L~~~-~~~~~~~~pG~Tr~~~~i~~~~~~~l~DTPGi~~p  170 (273)
T d1puja_         128 LINRLAKK-NIAKTGDRPGITTSQQWVKVGKELELLDTPGILWP  170 (273)
T ss_dssp             HHHHHHTS-CCC------------CCEEETTTEEEEECCCCCCS
T ss_pred             hhhhhhcc-ceEEECCcccccccceEEECCCCeEEecCCCcccc
Confidence            58999999 67899999999999998888889999999998443

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.08  E-value=4e-07  Score=63.89  Aligned_cols=71  Identities=15%  Similarity=0.046  Sum_probs=31.7

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEEEe---------------------------CCceEEEcCCCCcccccCHHHHHH
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFFKL---------------------------GTKLCLVDLPGYGFAYAKEEVKDA   53 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~---------------------------~~~~~ivDtpG~~~~~~~~~~~~~   53 (162)
                      |||+||+.  .+.++++|+||.+.+.-..                           ..++.++|+||.-....      .
T Consensus        16 lfn~lt~~--~~~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~pGli~ga~------~   87 (319)
T d1wxqa1          16 FFSAATLV--DVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAGLVPGAH------E   87 (319)
T ss_dssp             HHHHHHC----------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC--------------
T ss_pred             HHHHHHCC--CCchhcCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEECCCcccchh------c
Confidence            68999999  5789999999986543110                           12488999999732210      1


Q ss_pred             HHHHHHHHHhcCcccceeEEEeecCC
Q 031293           54 WEELVKEYVSTRVSLKRVCLLIDTKW   79 (162)
Q Consensus        54 ~~~~~~~~~~~~~~~~~vi~vid~~~   79 (162)
                      -.....+++...+.+|++++|+|+..
T Consensus        88 g~~~~~~~l~~i~~~d~ii~VVd~~~  113 (319)
T d1wxqa1          88 GRGLGNKFLDDLRMASALIHVVDATG  113 (319)
T ss_dssp             -------CCCSSTTCSEEEEEEETTC
T ss_pred             ccchHHHHHHhhccceEEEEEecccc
Confidence            13345666777788999999999863

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.03  E-value=2.3e-06  Score=56.83  Aligned_cols=115  Identities=12%  Similarity=0.134  Sum_probs=64.7

Q ss_pred             CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCC--------CCccHHHHHHH----HHH---
Q 031293           30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG--------VKPRDHELISL----MER---   94 (162)
Q Consensus        30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~--------~~~~~~~~~~~----l~~---   94 (162)
                      +-++.++|++|+             ..+........+.++.+++++|....        ......+....    +..   
T Consensus        46 ~~~~~~~D~~Gq-------------~~~r~~w~~~~~~~~~ii~v~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~  112 (221)
T d1azta2          46 KVNFHMFDVGGQ-------------RDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWL  112 (221)
T ss_dssp             TEEEEEEECCCS-------------TTTTTGGGGGCTTCSEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGG
T ss_pred             cEEEEEEecCcc-------------ceeccchhhhcccccceEEEEEccccccccccccchHHHHHHHHHHHHHhcChhh
Confidence            345899999998             22222233334556899999997541        11112222222    221   


Q ss_pred             hCCceEEEEeccCCCCcHHH--------------------------------HHHHHHHHHHHH----hcCC--CCCCeE
Q 031293           95 SQTKYQVVLTKTDTVFPIDV--------------------------------ARRAMQIEESLK----ANNS--LVQPVM  136 (162)
Q Consensus        95 ~~~~~ivv~nK~Dl~~~~~~--------------------------------~~~~~~~~~~~~----~~~~--~~~~i~  136 (162)
                      .++|+++++||+|+..+...                                ....+.++..+.    ....  +..-++
T Consensus       113 ~~~~iil~~NK~Dl~~~k~~~~~~~~~~~f~~~~~~~~~~~~~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~y~h  192 (221)
T d1azta2         113 RTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPH  192 (221)
T ss_dssp             SSCEEEEEEECHHHHHHHHHHCSSCHHHHCGGGGGCCCCTTCCCCTTCCHHHHHHHHHHHHHHHHHHTSSCTTSCCEEEE
T ss_pred             CCCcEEEEechhhhhhhhhccCcccHHHhCccccccCCcccccccCCCchhHHHHHHHHHHHHHHHhccCCCCCCceeee
Confidence            25899999999998633211                                112222322221    1111  112345


Q ss_pred             EeecCCCCCHHHHHHHHHHhh
Q 031293          137 MVSSKSGAGIRSLRTVLSKIA  157 (162)
Q Consensus       137 ~~Sa~~~~g~~~l~~~i~~~~  157 (162)
                      ++||.+..+++.++..+.+.+
T Consensus       193 ~T~A~Dt~ni~~vf~~v~d~I  213 (221)
T d1azta2         193 FTCAVDTENIRRVFNDCRDII  213 (221)
T ss_dssp             ECCTTCHHHHHHHHHTTHHHH
T ss_pred             ecceeccHHHHHHHHHHHHHH
Confidence            789999999999998876543

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.60  E-value=4e-06  Score=58.10  Aligned_cols=71  Identities=13%  Similarity=0.100  Sum_probs=47.8

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEEE--EeC------------------CceEEEcCCCCcccc-cCHHHHHHHHHHHH
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINFF--KLG------------------TKLCLVDLPGYGFAY-AKEEVKDAWEELVK   59 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~~--~~~------------------~~~~ivDtpG~~~~~-~~~~~~~~~~~~~~   59 (162)
                      |||+||+. ..+.++++|++|.+.+.-  ...                  ..+.++|.||.-... .+       ..+-.
T Consensus        26 lfnalT~~-~~~~~anypftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv~gA~~g-------~GLGn   97 (296)
T d1ni3a1          26 FFRAITKS-VLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGASTG-------VGLGN   97 (296)
T ss_dssp             HHHHHHHS-TTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCCCCSS-------SSSCH
T ss_pred             HHHHHHCC-CCCCcCCCCccCccCCeEEEeccccchhhhhhcccCCceecccceeeeccccccccccc-------cccHH
Confidence            68999988 567899999999865542  221                  248899999973331 11       11123


Q ss_pred             HHHhcCcccceeEEEeecCC
Q 031293           60 EYVSTRVSLKRVCLLIDTKW   79 (162)
Q Consensus        60 ~~~~~~~~~~~vi~vid~~~   79 (162)
                      +++...+.+|+++.|+|+..
T Consensus        98 ~fL~~ir~~d~lihVV~~f~  117 (296)
T d1ni3a1          98 AFLSHVRAVDAIYQVVRAFD  117 (296)
T ss_dssp             HHHHHHTTCSEEEEEEECCC
T ss_pred             HHHHHhhccceeEEEEeccC
Confidence            44445567799999999854

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.48  E-value=6.2e-06  Score=56.61  Aligned_cols=70  Identities=19%  Similarity=0.204  Sum_probs=41.5

Q ss_pred             ChhcccCCCCceeccCCCCcceEEEE--EEeC------------------CceEEEcCCCCcccccCHHHHHHHHHHHHH
Q 031293            1 MLNALTRQWGVVRTSDKPGLTQTINF--FKLG------------------TKLCLVDLPGYGFAYAKEEVKDAWEELVKE   60 (162)
Q Consensus         1 lin~L~~~~~~~~~~~~~g~t~~~~~--~~~~------------------~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~   60 (162)
                      |||+||+.  .++.+++|++|.+++.  ....                  ..+.++|.||.-...      +.-..+-.+
T Consensus        18 lf~~lt~~--~~~~~~ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~ga------~~g~Glg~~   89 (278)
T d1jala1          18 LFNALTKA--GIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGA------SKGEGLGNK   89 (278)
T ss_dssp             HHHHHHHT--C------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTH------HHHGGGTCC
T ss_pred             HHHHHHCC--CCccccCCCCCCCCceEEEecccHhHHHHHHhcCCCceeeeeEEEEEccccCCCc------ccCCCccHH
Confidence            68999998  4688999999986664  2221                  247799999982220      000112334


Q ss_pred             HHhcCcccceeEEEeecC
Q 031293           61 YVSTRVSLKRVCLLIDTK   78 (162)
Q Consensus        61 ~~~~~~~~~~vi~vid~~   78 (162)
                      +++..+.+|+++.|+|+.
T Consensus        90 FL~~ir~~d~LihVVr~f  107 (278)
T d1jala1          90 FLANIRETDAIGHVVRCF  107 (278)
T ss_dssp             HHHHHHTCSEEEEEEECS
T ss_pred             HHHHHHhccceEEEeecc
Confidence            556667789999999974

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=96.93  E-value=0.0069  Score=39.32  Aligned_cols=100  Identities=19%  Similarity=0.189  Sum_probs=50.5

Q ss_pred             CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCCC
Q 031293           31 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF  110 (162)
Q Consensus        31 ~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~  110 (162)
                      ..+.+|||||..... ....  . ...+.+..... ..+-+++|+++..+... ...........++. -+++||.|...
T Consensus        95 ~d~IlIDTaGr~~~~-~~~~--~-~~el~~~~~~~-~~~~~~LVl~a~~~~~~-~~~~~~~~~~~~~~-~lI~TKlDet~  167 (211)
T d1j8yf2          95 MEIIIVDTAGRHGYG-EEAA--L-LEEMKNIYEAI-KPDEVTLVIDASIGQKA-YDLASKFNQASKIG-TIIITKMDGTA  167 (211)
T ss_dssp             CSEEEEECCCSCCTT-CHHH--H-HHHHHHHHHHH-CCSEEEEEEEGGGGGGH-HHHHHHHHHHCTTE-EEEEECTTSCS
T ss_pred             CceEEEecCCcCccc-hhhH--H-HHHHHHHHhhc-CCceEEEEEecccCcch-HHHHhhhhcccCcc-eEEEecccCCC
Confidence            358999999962211 0000  0 11122222222 34678899998765322 12222333333333 46689999875


Q ss_pred             cHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHH
Q 031293          111 PIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRS  148 (162)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~  148 (162)
                      ...  .    +-+.....+   .|+.++|  .|+++++
T Consensus       168 ~~G--~----~l~~~~~~~---lPi~~it--~Gq~v~D  194 (211)
T d1j8yf2         168 KGG--G----ALSAVAATG---ATIKFIG--TGEKIDE  194 (211)
T ss_dssp             CHH--H----HHHHHHTTT---CCEEEEE--CSSSTTC
T ss_pred             ccc--H----HHHHHHHHC---cCEEEEe--CCCCccc
Confidence            432  1    122233333   4888887  5666654

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=96.57  E-value=0.015  Score=37.61  Aligned_cols=101  Identities=15%  Similarity=0.102  Sum_probs=48.7

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcC--cccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCC
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTR--VSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV  109 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~  109 (162)
                      .+.++||||.....  ...-+.... +.+.....  ...+-+++|+|+..+... ..+........+ +--+++||.|..
T Consensus        93 d~ilIDTaGr~~~d--~~~~~el~~-l~~~~~~~~~~~p~~~~LVl~a~~~~~~-~~~~~~~~~~~~-~~~lIlTKlDe~  167 (211)
T d2qy9a2          93 DVLIADTAGRLQNK--SHLMEELKK-IVRVMKKLDVEAPHEVMLTIDASTGQNA-VSQAKLFHEAVG-LTGITLTKLDGT  167 (211)
T ss_dssp             SEEEECCCCCGGGH--HHHHHHHHH-HHHHHTTTCTTCCSEEEEEEEGGGTHHH-HHHHHHHHHHSC-CCEEEEECCTTC
T ss_pred             CEEEeccCCCcccc--HHHHHHHHH-HHHHHhhhcccCcceeeeehhcccCcch-HHHHhhhhhccC-CceEEEeecCCC
Confidence            58999999962210  001111111 22222211  124678899998764211 112222333223 345677999986


Q ss_pred             CcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHH
Q 031293          110 FPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRS  148 (162)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~  148 (162)
                      ....  ..+    +.....+   .|+.+++  .|+++++
T Consensus       168 ~~~G--~~l----~~~~~~~---~Pi~~i~--~Gq~v~D  195 (211)
T d2qy9a2         168 AKGG--VIF----SVADQFG---IPIRYIG--VGERIED  195 (211)
T ss_dssp             TTTT--HHH----HHHHHHC---CCEEEEE--CSSSGGG
T ss_pred             CCcc--HHH----HHHHHHC---CCEEEEe--CCCCccc
Confidence            4332  111    1122222   4888887  5666644

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=96.23  E-value=0.012  Score=38.19  Aligned_cols=102  Identities=15%  Similarity=0.157  Sum_probs=48.1

Q ss_pred             CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcC--cccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCC
Q 031293           31 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTR--VSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDT  108 (162)
Q Consensus        31 ~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl  108 (162)
                      ..+.++||||.....  ...-+.... +.+.....  ...+-+++|+|+..+. ....+........+ +--++++|.|.
T Consensus        94 ~d~ilIDTaGr~~~d--~~~~~el~~-~~~~~~~~~~~~p~~~~LVl~a~~~~-~~~~~~~~~~~~~~-~~~lI~TKlDe  168 (213)
T d1vmaa2          94 KDVVIIDTAGRLHTK--KNLMEELRK-VHRVVKKKIPDAPHETLLVIDATTGQ-NGLVQAKIFKEAVN-VTGIILTKLDG  168 (213)
T ss_dssp             CSEEEEEECCCCSCH--HHHHHHHHH-HHHHGGGTCTTCCSEEEEEEEGGGHH-HHHHHHHHHHHHSC-CCEEEEECGGG
T ss_pred             CCEEEEeccccccch--HHHHHHHHH-HHhhhhhccccccceeEEeeccccCc-chhhhhhhhccccC-CceEEEecccC
Confidence            358999999963221  000111111 11221111  1246788999987531 11112222223223 34567799998


Q ss_pred             CCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHH
Q 031293          109 VFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRS  148 (162)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~  148 (162)
                      .....  ..+    +.....+   .|+.+++  +|+++++
T Consensus       169 ~~~~G--~~l----~~~~~~~---~Pi~~i~--~Gq~v~D  197 (213)
T d1vmaa2         169 TAKGG--ITL----AIARELG---IPIKFIG--VGEKAED  197 (213)
T ss_dssp             CSCTT--HHH----HHHHHHC---CCEEEEE--CSSSGGG
T ss_pred             CCccc--HHH----HHHHHHC---CCEEEEe--CCCCccc
Confidence            64332  111    1122222   4888887  5666654

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.95  E-value=0.0011  Score=43.62  Aligned_cols=44  Identities=25%  Similarity=0.328  Sum_probs=28.4

Q ss_pred             ChhcccCCCCce--eccC----CCCcceEEEEEEeCCceEEEcCCCCccc
Q 031293            1 MLNALTRQWGVV--RTSD----KPGLTQTINFFKLGTKLCLVDLPGYGFA   44 (162)
Q Consensus         1 lin~L~~~~~~~--~~~~----~~g~t~~~~~~~~~~~~~ivDtpG~~~~   44 (162)
                      |+|+|.+.....  .+|.    -+.||+....+.+...-.++||||+...
T Consensus       111 LiN~L~~~~~~~T~~vs~~~~rGrHTTt~~~l~~l~~gg~iiDTPG~r~~  160 (225)
T d1u0la2         111 LLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANL  160 (225)
T ss_dssp             HHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTC
T ss_pred             HHHhhcchhhhhccCcccccCCCCccccceeEEEECCCcEEEeCCccccc
Confidence            689998763221  1232    2457888888888766899999999554

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=94.66  E-value=0.024  Score=36.68  Aligned_cols=64  Identities=11%  Similarity=0.048  Sum_probs=39.7

Q ss_pred             ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCceE-EEEeccCCCC
Q 031293           32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQ-VVLTKTDTVF  110 (162)
Q Consensus        32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~i-vv~nK~Dl~~  110 (162)
                      .+.++|+|+.-            .......+.   .+|.+++++.+...-.....+....+.+.+.|++ +|+||.+...
T Consensus       113 d~IiiD~~~~~------------~~~~~~~l~---~aD~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~giv~N~~~~~~  177 (237)
T d1g3qa_         113 DFILIDCPAGL------------QLDAMSAML---SGEEALLVTNPEISCLTDTMKVGIVLKKAGLAILGFVLNRYGRSD  177 (237)
T ss_dssp             SEEEEECCSSS------------SHHHHHHHT---TCSEEEEEECSCHHHHHHHHHHHHHHHHTTCEEEEEEEEEETSCT
T ss_pred             CEEEEcccccc------------cccchhhhh---hhhcccccccccceecchhhHHHHHHhhhhhhhhhhhhccccccc
Confidence            58999998541            222333333   3599999987753211223344566677788865 8999998653

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=94.53  E-value=0.051  Score=34.94  Aligned_cols=71  Identities=23%  Similarity=0.175  Sum_probs=37.7

Q ss_pred             CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHH-HHhCCceEEEEeccCCC
Q 031293           31 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLM-ERSQTKYQVVLTKTDTV  109 (162)
Q Consensus        31 ~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l-~~~~~~~ivv~nK~Dl~  109 (162)
                      ..+.++||||.....  ....    ..+.+... ....+-+++|+++..+  ..+....... ...++ -=++++|.|..
T Consensus        93 ~d~vlIDTaGr~~~d--~~~~----~el~~~~~-~~~~~~~llv~~a~~~--~~~~~~~~~f~~~~~~-~~~I~TKlDe~  162 (207)
T d1ls1a2          93 RDLILVDTAGRLQID--EPLM----GELARLKE-VLGPDEVLLVLDAMTG--QEALSVARAFDEKVGV-TGLVLTKLDGD  162 (207)
T ss_dssp             CCEEEEECCCCSSCC--HHHH----HHHHHHHH-HHCCSEEEEEEEGGGT--HHHHHHHHHHHHHTCC-CEEEEECGGGC
T ss_pred             Ccceeecccccchhh--hhhH----HHHHHHHh-hcCCceEEEEeccccc--hhHHHHHHHHHhhCCC-CeeEEeecCcc
Confidence            458999999973321  1111    12222222 2234788999998765  2222332222 22333 34667999976


Q ss_pred             Cc
Q 031293          110 FP  111 (162)
Q Consensus       110 ~~  111 (162)
                      ..
T Consensus       163 ~~  164 (207)
T d1ls1a2         163 AR  164 (207)
T ss_dssp             SS
T ss_pred             cc
Confidence            43

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=94.34  E-value=0.1  Score=33.51  Aligned_cols=76  Identities=21%  Similarity=0.199  Sum_probs=38.5

Q ss_pred             CceEEEcCCCCcccccCHHHHHHHHHHHHHHHh--cCcccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCC
Q 031293           31 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS--TRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDT  108 (162)
Q Consensus        31 ~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl  108 (162)
                      ..+.++||||.....  ...-+.+.. +.+...  .....+-+++|+|+..+. ....+........+.. -+++||.|.
T Consensus        89 ~d~ilIDTaGr~~~d--~~l~~el~~-~~~~~~~~~~~~p~~~~LVl~a~~~~-~~~~~~~~~~~~~~~~-~lI~TKlDe  163 (207)
T d1okkd2          89 YDLLFVDTAGRLHTK--HNLMEELKK-VKRAIAKADPEEPKEVWLVLDAVTGQ-NGLEQAKKFHEAVGLT-GVIVTKLDG  163 (207)
T ss_dssp             CSEEEECCCCCCTTC--HHHHHHHHH-HHHHHHHHCTTCCSEEEEEEETTBCT-HHHHHHHHHHHHHCCS-EEEEECTTS
T ss_pred             CCEEEcCccccchhh--HHHHHHHHH-HHHHhhhcccCCCceEEEEeecccCc-hHHHHHHHhhhccCCc-eEEEeccCC
Confidence            458999999963221  111111111 222221  112346788999997653 1122233333434444 556799998


Q ss_pred             CCc
Q 031293          109 VFP  111 (162)
Q Consensus       109 ~~~  111 (162)
                      ...
T Consensus       164 t~~  166 (207)
T d1okkd2         164 TAK  166 (207)
T ss_dssp             SCC
T ss_pred             CCC
Confidence            643

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=94.30  E-value=0.0079  Score=39.55  Aligned_cols=43  Identities=23%  Similarity=0.437  Sum_probs=22.6

Q ss_pred             ChhcccCCCCce--eccC--CCC--cceEEEEEEeCCceEEEcCCCCccc
Q 031293            1 MLNALTRQWGVV--RTSD--KPG--LTQTINFFKLGTKLCLVDLPGYGFA   44 (162)
Q Consensus         1 lin~L~~~~~~~--~~~~--~~g--~t~~~~~~~~~~~~~ivDtpG~~~~   44 (162)
                      |+|+|.+.....  .+|.  ..|  ||+....+..+. -.++||||+...
T Consensus       113 LiN~L~~~~~~~t~~vs~~~~rGrHTTt~~~l~~~~g-g~iiDTPG~r~~  161 (231)
T d1t9ha2         113 LLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSG-GLVADTPGFSSL  161 (231)
T ss_dssp             HHHHHCC-------------------CCCCCEEEETT-EEEESSCSCSSC
T ss_pred             HHHhhccHhHhhhcccccccCCCceeeeeEEEEecCC-CEEEECCccccc
Confidence            689998873222  2333  233  666666666653 679999999655

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=91.45  E-value=0.37  Score=30.62  Aligned_cols=42  Identities=19%  Similarity=0.226  Sum_probs=24.8

Q ss_pred             cceeEEEeecCCCCCccHHHHHHHHHHhCCce-EEEEeccCCC
Q 031293           68 LKRVCLLIDTKWGVKPRDHELISLMERSQTKY-QVVLTKTDTV  109 (162)
Q Consensus        68 ~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~-ivv~nK~Dl~  109 (162)
                      +|.++++..+...-.......+..+...+.+. -+|+||.+..
T Consensus       132 ad~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~N~~~~~  174 (232)
T d1hyqa_         132 AQELLLVVNPEISSITDGLKTKIVAERLGTKVLGVVVNRITTL  174 (232)
T ss_dssp             SSEEEEEECSSHHHHHHHHHHHHHHHHHTCEEEEEEEEEECTT
T ss_pred             hheeeeeccccccchhhhhhhhhhhhhcccccccccccccccc
Confidence            58888887764321111223344555667774 5789998754

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=87.44  E-value=0.43  Score=30.60  Aligned_cols=42  Identities=21%  Similarity=0.231  Sum_probs=23.0

Q ss_pred             cceeEEEeecCCCCCccHHHHHHHH-HHhCCceEEEEeccCCCCc
Q 031293           68 LKRVCLLIDTKWGVKPRDHELISLM-ERSQTKYQVVLTKTDTVFP  111 (162)
Q Consensus        68 ~~~vi~vid~~~~~~~~~~~~~~~l-~~~~~~~ivv~nK~Dl~~~  111 (162)
                      .+.++.++|+........  ....+ .....-=++++||+|+.++
T Consensus       122 l~~vi~vVDa~~~~~~~~--~~~~~~~Qi~~AD~ivlNK~Dl~~~  164 (222)
T d1nija1         122 LDGVIALVDAVHADEQMN--QFTIAQSQVGYADRILLTKTDVAGE  164 (222)
T ss_dssp             EEEEEEEEETTTHHHHHH--HCHHHHHHHHTCSEEEEECTTTCSC
T ss_pred             ccchhhhhhhhhhhhhhh--hhHHHHHHHHhCCcccccccccccH
Confidence            478899999875321101  00111 1112233688899999864