Citrus Sinensis ID: 031299

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160--

MGEFSWPTEDELKEMRNKVSEMSGRDAEEVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFRIDEIQQPTNSVKKHHAVYASDSAKIKEECKWGNYARGALYALQSRGNILTEGIIGYICGSDNLDSSGLSSSAAC

ccccccccHHHHHHHHHHHHHHHcccccccEEEEcccEEccccccccccccEEEEEEccccEEEEEEEccccEEEEEccccccEEEEEcccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccEEEEEEcccccccccHHHHHcc

ccccccccHHHHHHHHHHHHHHHccccccEEEEEcccEEEEccccEcccccEEEEEEEcccEEEEEEEccccEEEEEEcccccEEEEEEcccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccEEEEEEcccccccccccccccc

mgefswpteDELKEMRNKVsemsgrdaeeVRVVVspyricplgahidhqggtvsAMTINKGIllgfvpsgdtEVVLRsgqfdgevrfrideiqqptnsvkkhHAVYASDSAKIKEECKWGNYARGALYALQSRGNILTEGIIGYIcgsdnldssglsssaac

mgefswptedeLKEMrnkvsemsgrdaeevRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFRIDeiqqptnsvkkhhAVYASDSAKIKEECKWGNYARGALYALQSRGNILTEGIIGYICGsdnldssglsssaac

MGEFSWPTEDELKEMRNKVSEMSGRDAEEVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFRIDEIQQPTNSVKKHHAVYASDSAKIKEECKWGNYARGALYALQSRGNILTEGIIGYIcgsdnldssglsssaac

*****************************VRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFRIDEIQQPTNSVKKHHAVYASDSAKIKEECKWGNYARGALYALQSRGNILTEGIIGYICGS**************

*********DELKEMRNKVSEMSGRDAEEVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFRIDEIQQPTNSVKKHHAVYASDSAKIKEECKWGNYARGALYALQSRGNILTEGIIGYICGSDNLDSSGLSSSAAC

MGEFSWPTEDELKEM************EEVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFRIDEIQQPTNSVKKHHAVYASDSAKIKEECKWGNYARGALYALQSRGNILTEGIIGYICGSDNLD**********

*****WPTEDELKEMRNKVSEMSGRDAEEVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFRIDEIQQPT*********Y*SDSAKIKEECKWGNYARGALYALQSRGNILTEGIIGYICGSDNLD**********

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MGEFSWPTEDELKEMRNKVSEMSGRDAEEVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFRIDEIQQPTNSVKKHHAVYASDSAKIKEECKWGNYARGALYALQSRGNILTEGIIGYICGSDNLDSSGLSSSAAC

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		162	2.2.26 [Sep-21-2011]
Q8VYG2		424	Galacturonokinase OS=Arab	yes	no	0.882	0.337	0.664	1e-50
Q00052		388	Galactokinase OS=Lactobac	yes	no	0.703	0.293	0.305	2e-05
Q9KDV4		395	Galactokinase OS=Bacillus	yes	no	0.691	0.283	0.285	2e-05
B2G9P6		392	Galactokinase OS=Lactobac	yes	no	0.728	0.301	0.343	3e-05
A5VME2		392	Galactokinase OS=Lactobac	yes	no	0.728	0.301	0.343	3e-05
Q8R8R7		390	Galactokinase OS=Thermoan	yes	no	0.753	0.312	0.272	3e-05
A5UZX0		391	Galactokinase OS=Roseifle	yes	no	0.666	0.276	0.269	3e-05
B2GEP6		388	Galactokinase OS=Lactobac	yes	no	0.691	0.288	0.315	3e-05
Q03PA8		387	Galactokinase OS=Lactobac	yes	no	0.728	0.304	0.275	7e-05
Q5LYY7		388	Galactokinase OS=Streptoc	yes	no	0.703	0.293	0.262	0.0001

>sp\|Q8VYG2\|GALAK_ARATH Galacturonokinase OS=Arabidopsis thaliana GN=GALAK PE=1 SV=1	Back alignment and function desciption

 Score =  198 bits (504), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 97/146 (66%), Positives = 112/146 (76%), Gaps = 3/146 (2%)

Query: 4   FSWPTEDELKEMRNKVSEMSGRDAEEVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGIL 63
            SWPT+ EL  ++  V++MSGRD  EVRVVV+PYRICPLGAHIDHQGGTVSAMTINKGIL
Sbjct: 1   MSWPTDSELNSIKEAVAQMSGRDKGEVRVVVAPYRICPLGAHIDHQGGTVSAMTINKGIL 60

Query: 64  LGFVPSGDTEVVLRSGQFDGEVRFRIDEIQQPTNSVKKHHAVYASDSAKIKEECKWGNYA 123
           LGFVPSGDT+V LRS QF+GEV FR+DEIQ P     K+ A   S S   KE+  WG YA
Sbjct: 61  LGFVPSGDTQVQLRSAQFEGEVCFRVDEIQHPIGLANKNGASTPSPS---KEKSIWGTYA 117

Query: 124 RGALYALQSRGNILTEGIIGYICGSD 149
           RGA+YALQS    L +GIIGY+ GS+
Sbjct: 118 RGAVYALQSSKKNLKQGIIGYLSGSN 143

Sugar-1-kinase with a strict substrate specificity for the alpha-anomeric configuration of D-galacturonic acid (D-GalA) and ATP. Involved in the biosynthesis of UDP-galacturonic acid (UDP-GalA) from the salvaged GalA that is released during growth-dependent cell wall restructuring.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: .EC: 4EC: 4

>sp\|Q00052\|GAL1_LACHE Galactokinase OS=Lactobacillus helveticus GN=galK PE=3 SV=1	Back alignment and function description

>sp\|Q9KDV4\|GAL1_BACHD Galactokinase OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) GN=galK PE=3 SV=1	Back alignment and function description

>sp\|B2G9P6\|GAL1_LACRJ Galactokinase OS=Lactobacillus reuteri (strain JCM 1112) GN=galK PE=3 SV=1	Back alignment and function description

>sp\|A5VME2\|GAL1_LACRD Galactokinase OS=Lactobacillus reuteri (strain DSM 20016) GN=galK PE=3 SV=1	Back alignment and function description

>sp\|Q8R8R7\|GAL1_THETN Galactokinase OS=Thermoanaerobacter tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) GN=galK PE=3 SV=1	Back alignment and function description

>sp\|A5UZX0\|GAL1_ROSS1 Galactokinase OS=Roseiflexus sp. (strain RS-1) GN=galK PE=3 SV=1	Back alignment and function description

>sp\|B2GEP6\|GAL1_LACF3 Galactokinase OS=Lactobacillus fermentum (strain NBRC 3956 / LMG 18251) GN=galK PE=3 SV=1	Back alignment and function description

>sp\|Q03PA8\|GAL1_LACBA Galactokinase OS=Lactobacillus brevis (strain ATCC 367 / JCM 1170) GN=galK PE=3 SV=1	Back alignment and function description

>sp\|Q5LYY7\|GAL1_STRT1 Galactokinase OS=Streptococcus thermophilus (strain CNRZ 1066) GN=galK PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		162
372995399		431	GALK [Morus alba var. multicaulis]	0.993	0.373	0.708	2e-62
225462522		436	PREDICTED: galacturonokinase [Vitis vini	0.919	0.341	0.664	2e-54
255546650		431	galactokinase, putative [Ricinus communi	0.956	0.359	0.675	2e-54
356513221		431	PREDICTED: galacturonokinase-like [Glyci	0.876	0.329	0.66	9e-53
357520679		308	Galactokinase [Medicago truncatula] gi\|3	0.864	0.454	0.657	3e-50
357520677		437	Galactokinase [Medicago truncatula] gi\|3	0.864	0.320	0.657	3e-50
356527722		933	PREDICTED: uncharacterized protein LOC10	0.882	0.153	0.624	4e-50
22330971		424	galactokinase [Arabidopsis thaliana] gi\|	0.882	0.337	0.664	6e-49
224090463		413	predicted protein [Populus trichocarpa]	0.851	0.334	0.614	1e-48
297833852		424	GHMP kinase family protein [Arabidopsis	0.882	0.337	0.650	3e-48

>gi\|372995399\|gb\|AEY11272.1\| GALK [Morus alba var. multicaulis]	Back alignment and taxonomy information

 Score =  243 bits (620), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 114/161 (70%), Positives = 136/161 (84%)

Query: 1   MGEFSWPTEDELKEMRNKVSEMSGRDAEEVRVVVSPYRICPLGAHIDHQGGTVSAMTINK 60
           MG FSWP++ EL E+R  VS+M+GR  EEVRVV SPYRICPLGAHIDHQGGTVSAMTINK
Sbjct: 1   MGGFSWPSQSELNEVREIVSKMAGRGTEEVRVVASPYRICPLGAHIDHQGGTVSAMTINK 60

Query: 61  GILLGFVPSGDTEVVLRSGQFDGEVRFRIDEIQQPTNSVKKHHAVYASDSAKIKEECKWG 120
           GILLGFVPSGD++VVLRSGQF GEVRF +DE Q   ++   ++ + A+DS+KI++EC WG
Sbjct: 61  GILLGFVPSGDSQVVLRSGQFKGEVRFSVDEAQDSGHANAMNNKIDANDSSKIRDECNWG 120

Query: 121 NYARGALYALQSRGNILTEGIIGYICGSDNLDSSGLSSSAA 161
           NY RGALYALQ +GN L++G+IGYICGS+ LD SGLSSSAA
Sbjct: 121 NYPRGALYALQRKGNHLSQGLIGYICGSEGLDCSGLSSSAA 161

Source: Morus alba var. multicaulis

Species: Morus alba

Genus: Morus

Family: Moraceae

Order: Rosales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|225462522\|ref\|XP_002264528.1\| PREDICTED: galacturonokinase [Vitis vinifera] gi\|296090474\|emb\|CBI40670.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|255546650\|ref\|XP_002514384.1\| galactokinase, putative [Ricinus communis] gi\|223546481\|gb\|EEF47980.1\| galactokinase, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|356513221\|ref\|XP_003525312.1\| PREDICTED: galacturonokinase-like [Glycine max]	Back alignment and taxonomy information

>gi\|357520679\|ref\|XP_003630628.1\| Galactokinase [Medicago truncatula] gi\|355524650\|gb\|AET05104.1\| Galactokinase [Medicago truncatula]	Back alignment and taxonomy information

>gi\|357520677\|ref\|XP_003630627.1\| Galactokinase [Medicago truncatula] gi\|355524649\|gb\|AET05103.1\| Galactokinase [Medicago truncatula]	Back alignment and taxonomy information

>gi\|356527722\|ref\|XP_003532457.1\| PREDICTED: uncharacterized protein LOC100793652 [Glycine max]	Back alignment and taxonomy information

>gi|22330971|ref|NP_187681.2| galactokinase [Arabidopsis thaliana] gi|75304441|sp|Q8VYG2.1|GALAK_ARATH RecName: Full=Galacturonokinase; AltName: Full=D-galacturonic acid-1-P kinase gi|18175773|gb|AAL59925.1| putative galactokinase [Arabidopsis thaliana] gi|20465755|gb|AAM20366.1| putative galactokinase [Arabidopsis thaliana] gi|215276406|gb|ACJ65066.1| D-galacturonic acid-1-P kinase [Arabidopsis thaliana] gi|332641423|gb|AEE74944.1| galactokinase [Arabidopsis thaliana]

Back alignment and taxonomy information

>gi\|224090463\|ref\|XP_002308990.1\| predicted protein [Populus trichocarpa] gi\|222854966\|gb\|EEE92513.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|297833852\|ref\|XP_002884808.1\| GHMP kinase family protein [Arabidopsis lyrata subsp. lyrata] gi\|297330648\|gb\|EFH61067.1\| GHMP kinase family protein [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		162
TAIR\|locus:2075730		424	GalAK "galacturonic acid kinas	0.851	0.325	0.673	2.1e-45

TAIR\|locus:2075730 GalAK "galacturonic acid kinase" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 477 (173.0 bits), Expect = 2.1e-45, P = 2.1e-45
 Identities = 95/141 (67%), Positives = 109/141 (77%)

Query:     5 SWPTEDELKEMRNKVSEMSGRDAEEVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILL 64
             SWPT+ EL  ++  V++MSGRD  EVRVVV+PYRICPLGAHIDHQGGTVSAMTINKGILL
Sbjct:     2 SWPTDSELNSIKEAVAQMSGRDKGEVRVVVAPYRICPLGAHIDHQGGTVSAMTINKGILL 61

Query:    65 GFVPSGDTEVVLRSGQFDGEVRFRIDEIQQPTNSVKKHHAVYASDSAKIKEECKWGNYAR 124
             GFVPSGDT+V LRS QF+GEV FR+DEIQ P     K+ A   S S   KE+  WG YAR
Sbjct:    62 GFVPSGDTQVQLRSAQFEGEVCFRVDEIQHPIGLANKNGASTPSPS---KEKSIWGTYAR 118

Query:   125 GALYALQSRGNILTEGIIGYI 145
             GA+YALQS    L +GIIGY+
Sbjct:   119 GAVYALQSSKKNLKQGIIGYL 139


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.135   0.398    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      162       145   0.00071  103 3  11 22  0.49    31
                                                     30  0.49    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  588 (63 KB)
  Total size of DFA:  137 KB (2085 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.66u 0.11s 15.77t   Elapsed:  00:00:00
  Total cpu time:  15.66u 0.11s 15.77t   Elapsed:  00:00:00
  Start:  Mon May 20 21:34:03 2013   End:  Mon May 20 21:34:03 2013

GO:0004335 "galactokinase activity" evidence=IEA;ISS;IDA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006012 "galactose metabolic process" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

GO:0016773 "phosphotransferase activity, alcohol group as acceptor" evidence=IEA

GO:0046835 "carbohydrate phosphorylation" evidence=IEA;IDA

GO:0046396 "D-galacturonate metabolic process" evidence=IDA

GO:0047912 "galacturonokinase activity" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		162
PLN02865		423	PLN02865, PLN02865, galactokinase	1e-84
COG0153		390	COG0153, GalK, Galactokinase [Carbohydrate transpo	1e-12
PRK05322		387	PRK05322, PRK05322, galactokinase; Provisional	6e-11
TIGR00131		386	TIGR00131, gal_kin, galactokinase	3e-08
PRK03817		351	PRK03817, PRK03817, galactokinase; Provisional	3e-06
PRK05101		382	PRK05101, PRK05101, galactokinase; Provisional	8e-05
PRK00555		363	PRK00555, PRK00555, galactokinase; Provisional	2e-04

>gnl\|CDD\|215466 PLN02865, PLN02865, galactokinase	Back alignment and domain information

 Score =  254 bits (650), Expect = 1e-84
 Identities = 110/161 (68%), Positives = 128/161 (79%), Gaps = 10/161 (6%)

Query: 1   MGEFSWPTEDELKEMRNKVSEMSGRDAEEVRVVVSPYRICPLGAHIDHQGGTVSAMTINK 60
               SWP+ +EL E+R +V+ MSGR++ EVRVVVSPYRICPLGAHIDHQGGTVSAMTINK
Sbjct: 1   TCLGSWPSANELDEIRERVAAMSGRNSGEVRVVVSPYRICPLGAHIDHQGGTVSAMTINK 60

Query: 61  GILLGFVPSGDTEVVLRSGQFDGEVRFRIDEIQQPTNSVKKHHAVYASDSAKIKEECKWG 120
           GILLGFVPSGD EV+LRS QF+GEVRFR+DEIQ P            + S+  KEE  WG
Sbjct: 61  GILLGFVPSGDPEVLLRSAQFEGEVRFRVDEIQHPIA----------NVSSDSKEESNWG 110

Query: 121 NYARGALYALQSRGNILTEGIIGYICGSDNLDSSGLSSSAA 161
           +YARGA+YALQSRG+ L++GI GYI GS+ LDSSGLSSSAA
Sbjct: 111 DYARGAVYALQSRGHALSQGITGYISGSEGLDSSGLSSSAA 151

Length = 423

>gnl\|CDD\|223231 COG0153, GalK, Galactokinase [Carbohydrate transport and metabolism]	Back alignment and domain information

>gnl\|CDD\|235407 PRK05322, PRK05322, galactokinase; Provisional	Back alignment and domain information

>gnl\|CDD\|232841 TIGR00131, gal_kin, galactokinase	Back alignment and domain information

>gnl\|CDD\|235163 PRK03817, PRK03817, galactokinase; Provisional	Back alignment and domain information

>gnl\|CDD\|179937 PRK05101, PRK05101, galactokinase; Provisional	Back alignment and domain information

>gnl\|CDD\|179063 PRK00555, PRK00555, galactokinase; Provisional	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		162
PLN02865		423	galactokinase	100.0
COG0153		390	GalK Galactokinase [Carbohydrate transport and met	100.0
PTZ00290		468	galactokinase; Provisional	99.97
PRK05322		387	galactokinase; Provisional	99.97
PLN02521		497	galactokinase	99.97
PRK05101		382	galactokinase; Provisional	99.97
TIGR00131		386	gal_kin galactokinase. The galactokinases found by	99.96
PRK00555		363	galactokinase; Provisional	99.96
PF10509		52	GalKase_gal_bdg: Galactokinase galactose-binding s	99.9
KOG0631		489	consensus Galactokinase [Carbohydrate transport an	99.9
PRK03817		351	galactokinase; Provisional	99.9
TIGR00549		273	mevalon_kin mevalonate kinase. Paracoccus exhibits	99.86
PRK13412		974	fkp bifunctional fucokinase/L-fucose-1-P-guanylylt	99.85
TIGR01220		358	Pmev_kin_Gr_pos phosphomevalonate kinase, ERG8-typ	99.82
PLN02677		387	mevalonate kinase	99.77
PRK03926		302	mevalonate kinase; Provisional	99.72
KOG1511		397	consensus Mevalonate kinase MVK/ERG12 [Lipid trans	99.71
COG1577		307	ERG12 Mevalonate kinase [Lipid metabolism]	99.62
TIGR00154		293	ispE 4-diphosphocytidyl-2C-methyl-D-erythritol kin	99.5
PRK00128		286	ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kin	99.43
PRK02534		312	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase;	99.4
PTZ00298		328	mevalonate kinase; Provisional	99.31
COG2605		333	Predicted kinase related to galactokinase and meva	99.3
PRK00343		271	ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kin	98.89
PRK14611		275	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase;	98.46
TIGR01219		454	Pmev_kin_ERG8 phosphomevalonate kinase, ERG8-type,	98.28
PRK14608		290	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase;	98.13
PRK14612		276	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase;	98.05
PRK14615		296	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase;	98.02
PRK14616		287	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase;	97.98
PRK14609		269	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase;	97.95
PRK01123		282	shikimate kinase; Provisional	97.95
TIGR01920		261	Shik_kin_archae shikimate kinase. This model repre	97.9
PRK14610		283	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase;	97.77
PLN02451		370	homoserine kinase	97.7
PRK03188		300	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase;	97.7
PRK00650		288	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase;	97.61
PRK14613		297	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase;	97.58
TIGR00144		324	beta_RFAP_syn beta-RFAP synthase. This protein fam	97.56
PRK14614		280	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase;	97.55
PRK04181		257	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase;	97.35
COG1685		278	Archaeal shikimate kinase [Amino acid transport an	97.34
PRK05905		258	hypothetical protein; Provisional	97.21
PTZ00299		336	homoserine kinase; Provisional	97.21
TIGR00191		302	thrB homoserine kinase. P.aeruginosa homoserine ki	97.16
COG0083		299	ThrB Homoserine kinase [Amino acid transport and m	97.07
KOG4644		948	consensus L-fucose kinase [Carbohydrate transport	96.57
PRK01212		301	homoserine kinase; Provisional	96.52
TIGR01240		305	mevDPdecarb diphosphomevalonate decarboxylase. Alt	96.01
COG1947		289	IspE 4-diphosphocytidyl-2C-methyl-D-erythritol 2-p	95.48
COG3890		337	ERG8 Phosphomevalonate kinase [Lipid metabolism]	91.72
PLN02407		343	diphosphomevalonate decarboxylase	89.97
KOG4519		459	consensus Phosphomevalonate kinase [Lipid transpor	88.57
COG3407		329	MVD1 Mevalonate pyrophosphate decarboxylase [Lipid	88.45
COG4542		293	PduX Protein involved in propanediol utilization,	85.9
COG1829		283	Predicted archaeal kinase (sugar kinase superfamil	83.02

>PLN02865 galactokinase	Back alignment and domain information

Probab=100.00  E-value=1.3e-35  Score=255.33  Aligned_cols=147  Identities=73%  Similarity=1.185  Sum_probs=121.7

Q ss_pred             CCCChHHHHHHHHHHHHHhCCCCcceEEEEccceeeccccccccCCceeEEeeeccceEEEEEEcCCCeEEEEeCCCCCe
Q 031299            5 SWPTEDELKEMRNKVSEMSGRDAEEVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGE   84 (162)
Q Consensus         5 ~~~~~~~~~~~~~~f~~~fg~~p~~~~~v~APGRv~L~GEH~Dy~gg~vl~~Ai~~~~~v~~~~~~~~~i~i~s~~~~~~   84 (162)
                      .||....++++++.|.+.||.+|+...+++||||||||||||||+||.||||||+++|+++++++++++++|+|.++++.
T Consensus         5 ~~~~~~~~~~l~~~F~~~fg~~p~~~~~~~APGRVnlIGEHtDYngG~VLp~AI~~~~~va~~~~~~~~i~v~s~~~~~~   84 (423)
T PLN02865          5 SWPSANELDEIRERVAAMSGRNSGEVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDPEVLLRSAQFEGE   84 (423)
T ss_pred             CCccHHHHHHHHHHHHHHhCCCcccceEEEcCcceecccccccCCCCeEEeEEeeccEEEEEEECCCCEEEEEECCCCCc
Confidence            69988888899999999999999633579999999999999999999999999999999999999999999999888655


Q ss_pred             eEEEcCCCCCCccccccccccccccccccccccCHHHHHHHHHHHHHHcCCCCCCcEEEEEEccc-CCCCCCcccccCC
Q 031299           85 VRFRIDEIQQPTNSVKKHHAVYASDSAKIKEECKWGNYARGALYALQSRGNILTEGIIGYICGSD-NLDSSGLSSSAAC  162 (162)
Q Consensus        85 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~y~~gvl~~l~~~g~~~~~G~~i~i~s~i-P~~gsGLsSSAAl  162 (162)
                      ++|+++.+.++..        ...+  ...+...|++|++|++..|.+.|.....||++.|+|++ |+ ++||||||||
T Consensus        85 ~~~~~~~~~~~~~--------~~~~--~~~~~~~W~~Yv~gv~~~l~~~g~~~~~G~~~~v~g~vpP~-gsGLsSSAAl  152 (423)
T PLN02865         85 VRFRVDEIQHPIA--------NVSS--DSKEESNWGDYARGAVYALQSRGHALSQGITGYISGSEGLD-SSGLSSSAAV  152 (423)
T ss_pred             eEEeccccccccc--------cccc--cCCCCCCHHHHHHHHHHHHHHcCCCCCCceEEEEECCCCCC-CCcccHHHHH
Confidence            6777765322100        0000  11245789999999999999888765369999999999 56 9999999985

>COG0153 GalK Galactokinase [Carbohydrate transport and metabolism]	Back alignment and domain information

>PTZ00290 galactokinase; Provisional	Back alignment and domain information

>PRK05322 galactokinase; Provisional	Back alignment and domain information

>PLN02521 galactokinase	Back alignment and domain information

>PRK05101 galactokinase; Provisional	Back alignment and domain information

>TIGR00131 gal_kin galactokinase	Back alignment and domain information

>PRK00555 galactokinase; Provisional	Back alignment and domain information

>PF10509 GalKase_gal_bdg: Galactokinase galactose-binding signature; InterPro: IPR019539 This entry represents a highly conserved galactokinase signature sequence which appears to be present in all galactokinases, irrespective of how many other ATP binding sites, etc that they carry []	Back alignment and domain information

>KOG0631 consensus Galactokinase [Carbohydrate transport and metabolism]	Back alignment and domain information

>PRK03817 galactokinase; Provisional	Back alignment and domain information

>TIGR00549 mevalon_kin mevalonate kinase	Back alignment and domain information

>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional	Back alignment and domain information

>TIGR01220 Pmev_kin_Gr_pos phosphomevalonate kinase, ERG8-type, Gram-positive branch	Back alignment and domain information

>PLN02677 mevalonate kinase	Back alignment and domain information

>PRK03926 mevalonate kinase; Provisional	Back alignment and domain information

>KOG1511 consensus Mevalonate kinase MVK/ERG12 [Lipid transport and metabolism]	Back alignment and domain information

>COG1577 ERG12 Mevalonate kinase [Lipid metabolism]	Back alignment and domain information

>TIGR00154 ispE 4-diphosphocytidyl-2C-methyl-D-erythritol kinase	Back alignment and domain information

>PRK00128 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional	Back alignment and domain information

>PRK02534 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional	Back alignment and domain information

>PTZ00298 mevalonate kinase; Provisional	Back alignment and domain information

>COG2605 Predicted kinase related to galactokinase and mevalonate kinase [General function prediction only]	Back alignment and domain information

>PRK00343 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional	Back alignment and domain information

>PRK14611 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional	Back alignment and domain information

>TIGR01219 Pmev_kin_ERG8 phosphomevalonate kinase, ERG8-type, eukaryotic branch	Back alignment and domain information

>PRK14608 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional	Back alignment and domain information

>PRK14612 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional	Back alignment and domain information

>PRK14615 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional	Back alignment and domain information

>PRK14616 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional	Back alignment and domain information

>PRK14609 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional	Back alignment and domain information

>PRK01123 shikimate kinase; Provisional	Back alignment and domain information

>TIGR01920 Shik_kin_archae shikimate kinase	Back alignment and domain information

>PRK14610 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional	Back alignment and domain information

>PLN02451 homoserine kinase	Back alignment and domain information

>PRK03188 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional	Back alignment and domain information

>PRK00650 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional	Back alignment and domain information

>PRK14613 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional	Back alignment and domain information

>TIGR00144 beta_RFAP_syn beta-RFAP synthase	Back alignment and domain information

>PRK14614 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional	Back alignment and domain information

>PRK04181 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional	Back alignment and domain information

>COG1685 Archaeal shikimate kinase [Amino acid transport and metabolism / Coenzyme metabolism]	Back alignment and domain information

>PRK05905 hypothetical protein; Provisional	Back alignment and domain information

>PTZ00299 homoserine kinase; Provisional	Back alignment and domain information

>TIGR00191 thrB homoserine kinase	Back alignment and domain information

>COG0083 ThrB Homoserine kinase [Amino acid transport and metabolism]	Back alignment and domain information

>KOG4644 consensus L-fucose kinase [Carbohydrate transport and metabolism]	Back alignment and domain information

>PRK01212 homoserine kinase; Provisional	Back alignment and domain information

>TIGR01240 mevDPdecarb diphosphomevalonate decarboxylase	Back alignment and domain information

>COG1947 IspE 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase [Lipid metabolism]	Back alignment and domain information

>COG3890 ERG8 Phosphomevalonate kinase [Lipid metabolism]	Back alignment and domain information

>PLN02407 diphosphomevalonate decarboxylase	Back alignment and domain information

>KOG4519 consensus Phosphomevalonate kinase [Lipid transport and metabolism]	Back alignment and domain information

>COG3407 MVD1 Mevalonate pyrophosphate decarboxylase [Lipid metabolism]	Back alignment and domain information

>COG4542 PduX Protein involved in propanediol utilization, and related proteins (includes coumermycin biosynthetic protein), possible kinase [Secondary metabolites biosynthesis, transport, and catabolism]	Back alignment and domain information

>COG1829 Predicted archaeal kinase (sugar kinase superfamily) [General function prediction only]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		162
1pie_A		419	Crystal Structure Of Lactococcus Lactis Galactokina		3e-04

>pdb|1PIE|A Chain A, Crystal Structure Of Lactococcus Lactis Galactokinase Complexed With Galactose Length = 419

Back alignment and structure

Iteration: 1

Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 35/132 (26%), Positives = 54/132 (40%), Gaps = 22/132 (16%) Query: 12 LKEMRNKVSEMSGRDAEEVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGD 71 L + K +E+ G D +EV SP RI +G H D+ GG V +I G D Sbjct: 31 LSALTEKFAEVFG-DTKEVEYFFSPGRINLIGEHTDYNGGYVFPASITIGTTGLARLRED 89 Query: 72 TEVVLRSGQFD--GEVRFRIDEIQQPTNSVKKHHAVYASDSAKIKEECKWGNYARGALYA 129 +V L S F G + F +DE+++ + W NY +G + Sbjct: 90 KKVKLYSENFPKLGVIEFDLDEVEKKDGEL-------------------WSNYVKGMIVM 130 Query: 130 LQSRGNILTEGI 141 L+ G + +G Sbjct: 131 LKGAGYEIDKGF 142

PyMOL of 1pie

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		162
1pie_A		419	Galactokinase; galactose, galactosemia, transferas	6e-27
2cz9_A		350	Probable galactokinase; structural genomics, NPPSF	1e-25
1wuu_A		399	Galactokinase; galactosemia, GHMP superfamily, tra	4e-24
3v2u_C		520	Protein GAL3; rossmann fold, GHMP superfamily, tra	6e-14
2a2c_A		478	N-acetylgalactosamine kinase; galactokinase, , tra	1e-12
1kkh_A		317	Mevalonate kinase; mixed beta sheet, phosphate-bin	5e-09
3k85_A		357	D-glycero-D-manno-heptose 1-phosphate kinase; bact	1e-06
1kvk_A		395	MK, mevalonate kinase; RMK, ATP, GHMP, transferase	1e-05
2x7i_A		308	Mevalonate kinase; transferase; HET: CIT; 2.20A {S	2e-04

>1pie_A Galactokinase; galactose, galactosemia, transferase; HET: GLA; 2.10A {Lactococcus lactis} SCOP: d.14.1.5 d.58.26.7 Length = 419	Back alignment and structure

 Score =  103 bits (259), Expect = 6e-27
 Identities = 43/155 (27%), Positives = 65/155 (41%), Gaps = 23/155 (14%)

Query: 9   EDELKEMRNKVSEMSGRDAEEVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVP 68
              L  +  K +E+ G D +EV    SP RI  +G H D+ GG V   +I  G       
Sbjct: 28  STVLSALTEKFAEVFG-DTKEVEYFFSPGRINLIGEHTDYNGGYVFPASITIGTTGLARL 86

Query: 69  SGDTEVVLRSGQFD--GEVRFRIDEIQQPTNSVKKHHAVYASDSAKIKEECKWGNYARGA 126
             D +V L S  F   G + F +DE+++                    +   W NY +G 
Sbjct: 87  REDKKVKLYSENFPKLGVIEFDLDEVEKK-------------------DGELWSNYVKGM 127

Query: 127 LYALQSRGNILTEGIIGYICGSDNLDSSGLSSSAA 161
           +  L+  G  + +G    I   +   +SGLSSSA+
Sbjct: 128 IVMLKGAGYEIDKGFELLIK-GEIPTASGLSSSAS 161

PyMOL of 1pie

>2cz9_A Probable galactokinase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.50A {Pyrococcus horikoshii} PDB: 2dei_A* 2dej_A* 1s4e_A* Length = 350	Back alignment and structure

>1wuu_A Galactokinase; galactosemia, GHMP superfamily, transferase; HET: GLA ANP; 2.50A {Homo sapiens} SCOP: d.14.1.5 d.58.26.7 Length = 399	Back alignment and structure

>3v2u_C Protein GAL3; rossmann fold, GHMP superfamily, transcription regulation, transcription; HET: GLA ATP; 2.10A {Saccharomyces cerevisiae} PDB: 3v5r_A 2aj4_A* Length = 520	Back alignment and structure

>2a2c_A N-acetylgalactosamine kinase; galactokinase, , transferase; HET: NG1 ADP; 1.65A {Homo sapiens} PDB: 2a2d_A* Length = 478	Back alignment and structure

>1kkh_A Mevalonate kinase; mixed beta sheet, phosphate-binding loop, beta-alpha-beta, transferase; 2.40A {Methanocaldococcus jannaschii} SCOP: d.14.1.5 d.58.26.3 PDB: 1vis_A Length = 317	Back alignment and structure

>3k85_A D-glycero-D-manno-heptose 1-phosphate kinase; bacteriodes thetaiotaomicron, protein structure initiative II(PSI II), nysgxrc; 2.28A {Bacteroides thetaiotaomicron} Length = 357	Back alignment and structure

>1kvk_A MK, mevalonate kinase; RMK, ATP, GHMP, transferase; HET: ATP; 2.40A {Rattus norvegicus} SCOP: d.14.1.5 d.58.26.3 PDB: 2r42_A* 2r3v_A Length = 395	Back alignment and structure

>2x7i_A Mevalonate kinase; transferase; HET: CIT; 2.20A {Staphylococcus aureus} Length = 308	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		162
3v2u_C		520	Protein GAL3; rossmann fold, GHMP superfamily, tra	99.96
1pie_A		419	Galactokinase; galactose, galactosemia, transferas	99.93
1wuu_A		399	Galactokinase; galactosemia, GHMP superfamily, tra	99.92
3k85_A		357	D-glycero-D-manno-heptose 1-phosphate kinase; bact	99.92
2a2c_A		478	N-acetylgalactosamine kinase; galactokinase, , tra	99.92
3k17_A		365	LIN0012 protein; protein structure initiative II(P	99.87
1kvk_A		395	MK, mevalonate kinase; RMK, ATP, GHMP, transferase	99.87
2cz9_A		350	Probable galactokinase; structural genomics, NPPSF	99.82
2pg9_A		337	Phosphomevalonate kinase; GHMP kinase superfamily,	99.82
1kkh_A		317	Mevalonate kinase; mixed beta sheet, phosphate-bin	99.78
3gon_A		335	Phosphomevalonate kinase; GHMP kinase superfamily,	99.77
4hac_A		321	Mevalonate kinase; GHMP, ATP binding, phosphorylat	99.73
2x7i_A		308	Mevalonate kinase; transferase; HET: CIT; 2.20A {S	99.72
2hfs_A		332	Mevalonate kinase, putative; GHMP kinase, trypanos	99.55
2ww4_A		283	4-diphosphocytidyl-2C-methyl-D-erythritol kinase;	99.47
2oi2_A		292	Mevalonate kinase; enzyme-inhibitor complex, trans	99.46
2v8p_A		271	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase;	99.4
2gs8_A		317	Mevalonate pyrophosphate decarboxylase; streptococ	99.37
3qt5_A		332	Mevalonate diphosphate decarboxylase; GHMP kinase	99.3
1h72_C		296	HK, homoserine kinase; transferase, threonine bios	99.23
1uek_A		275	4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol k	99.12
3pyf_A		306	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase;	98.82
1fi4_A		416	Mevalonate 5-diphosphate decarboxylase; mixed alph	98.42
3hul_A		298	HSK, HK, homoserine kinase; structural genomics, p	97.68
2hke_A		380	Diphosphomevalonate decarboxylase, putative; meval	96.91
3lto_A		323	Mevalonate diphosphate decarboxylase; protein stru	95.68
3f0n_A		414	Mevalonate pyrophosphate decarboxylase; cholestero	94.37

>3v2u_C Protein GAL3; rossmann fold, GHMP superfamily, transcription regulation, transcription; HET: GLA ATP; 2.10A {Saccharomyces cerevisiae} PDB: 3v5r_A 2aj4_A*	Back alignment and structure

Probab=99.96  E-value=6.5e-29  Score=217.73  Aligned_cols=134  Identities=19%  Similarity=0.192  Sum_probs=103.9

Q ss_pred             CCChHH---HHHHHHHHHHHhCCCCcceEEEEccceeeccccccccCCceeEEeeeccceEEEEEEc--CCCeEEEEeCC
Q 031299            6 WPTEDE---LKEMRNKVSEMSGRDAEEVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPS--GDTEVVLRSGQ   80 (162)
Q Consensus         6 ~~~~~~---~~~~~~~f~~~fg~~p~~~~~v~APGRv~L~GEH~Dy~gg~vl~~Ai~~~~~v~~~~~--~~~~i~i~s~~   80 (162)
                      ++++..   ..++++.|.+.||.+|+  .+++||||||||||||||+||+||||||+++|+++++++  +|++++|+|.+
T Consensus        14 ~~~~~~~~R~~~l~~~F~~~fg~~p~--~v~~APGRVnLiGEHtDyngG~VLp~AI~~~~~vav~~~~~~d~~i~i~S~~   91 (520)
T 3v2u_C           14 DLPRSFEQKHLAVVDAFFQTYHVKPD--FIARSPGRVNLIGEHIDYCDFSVLPLAIDVDMLCAVKILDEKNPSITLTNAD   91 (520)
T ss_dssp             -CCHHHHHHHHHHHHHHHHHHSSCCS--EEEEEEEEEEEECTTCGGGTCCBEEEEEEEEEEEEEEECCCSSCEEEEEESS
T ss_pred             cCcHHHHHHHHHHHHHHHHHhCCCCC--EEEEcceeEEEeccCeeeCCCEEEEEEeecceEEEEEeccCCCCEEEEEECC
Confidence            555533   46789999999999998  789999999999999999999999999999999999998  78899999987


Q ss_pred             CC-CeeEEEc--CCCCCCccccccccccccccccccccccCHHHHHHHHH----HHHHHc------CCCCCCcEEEEEEc
Q 031299           81 FD-GEVRFRI--DEIQQPTNSVKKHHAVYASDSAKIKEECKWGNYARGAL----YALQSR------GNILTEGIIGYICG  147 (162)
Q Consensus        81 ~~-~~~~~~l--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~y~~gvl----~~l~~~------g~~~~~G~~i~i~s  147 (162)
                      .. ...+|++  ++....               +. .....|++|++|++    ..+++.      |..+ .||+++|.|
T Consensus        92 ~~~~~~~~~l~~~~~~~~---------------i~-~~~~~W~~Yv~g~i~~v~~~l~~~~~~~~~g~~~-~G~~i~i~s  154 (520)
T 3v2u_C           92 PKFAQRKFDLPLDGSYMA---------------ID-PSVSEWSNYFKCGLHVAHSYLKKIAPERFNNTPL-VGAQIFCQS  154 (520)
T ss_dssp             TTSCCEEEECCTTCCCCC---------------CC-TTSCCHHHHHHHHHHHHHHHHHHHCHHHHSSSCC-CCEEEEEEE
T ss_pred             CCCCceEEEeccCccccc---------------cC-cccccHHHHHHHHHHHHHHHHHhhcccccccCCC-CceEEEEec
Confidence            54 2356776  321000               00 13578999999865    334442      3455 799999999


Q ss_pred             ccCCCCCCccccc
Q 031299          148 SDNLDSSGLSSSA  160 (162)
Q Consensus       148 ~iP~~gsGLsSSA  160 (162)
                      +||+ |+|| |||
T Consensus       155 ~vP~-gsGL-SAA  165 (520)
T 3v2u_C          155 DIPT-GGGL-SSA  165 (520)
T ss_dssp             CCCT-TSSH-HHH
T ss_pred             CCCC-CCCH-HHH
Confidence            9998 9999 443

PyMOL of 3v2u

>1pie_A Galactokinase; galactose, galactosemia, transferase; HET: GLA; 2.10A {Lactococcus lactis} SCOP: d.14.1.5 d.58.26.7	Back alignment and structure

>1wuu_A Galactokinase; galactosemia, GHMP superfamily, transferase; HET: GLA ANP; 2.50A {Homo sapiens} SCOP: d.14.1.5 d.58.26.7	Back alignment and structure

>3k85_A D-glycero-D-manno-heptose 1-phosphate kinase; bacteriodes thetaiotaomicron, protein structure initiative II(PSI II), nysgxrc; 2.28A {Bacteroides thetaiotaomicron}	Back alignment and structure

>2a2c_A N-acetylgalactosamine kinase; galactokinase, , transferase; HET: NG1 ADP; 1.65A {Homo sapiens} PDB: 2a2d_A*	Back alignment and structure

>3k17_A LIN0012 protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics, NEW YORK SGX research center for structural genomics; HET: PGE; 2.10A {Listeria innocua}	Back alignment and structure

>1kvk_A MK, mevalonate kinase; RMK, ATP, GHMP, transferase; HET: ATP; 2.40A {Rattus norvegicus} SCOP: d.14.1.5 d.58.26.3 PDB: 2r42_A* 2r3v_A	Back alignment and structure

>2cz9_A Probable galactokinase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.50A {Pyrococcus horikoshii} PDB: 2dei_A* 2dej_A* 1s4e_A*	Back alignment and structure

>1kkh_A Mevalonate kinase; mixed beta sheet, phosphate-binding loop, beta-alpha-beta, transferase; 2.40A {Methanocaldococcus jannaschii} SCOP: d.14.1.5 d.58.26.3 PDB: 1vis_A	Back alignment and structure

>3gon_A Phosphomevalonate kinase; GHMP kinase superfamily, ATP-binding, nucleotide- binding, transferase; HET: PMV ANP; 1.90A {Streptococcus pneumoniae} PDB: 1k47_A	Back alignment and structure

>4hac_A Mevalonate kinase; GHMP, ATP binding, phosphorylation, transferase; 1.92A {Methanosarcina mazei}	Back alignment and structure

>2x7i_A Mevalonate kinase; transferase; HET: CIT; 2.20A {Staphylococcus aureus}	Back alignment and structure

>2hfs_A Mevalonate kinase, putative; GHMP kinase, trypanosomatid parasite, transferase; 1.75A {Leishmania major} PDB: 2hfu_A*	Back alignment and structure

>2ww4_A 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; non-mevalonate pathway, isoprenoid biosynthesis, transferase; HET: ADP; 2.00A {Escherichia coli} PDB: 1oj4_A*	Back alignment and structure

>2oi2_A Mevalonate kinase; enzyme-inhibitor complex, transferase; HET: DP6; 2.50A {Streptococcus pneumoniae}	Back alignment and structure

>2v8p_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; nucleotide-binding, isoprene biosynthesis, transferase, ATP-binding, non-mevalonate; HET: CDP ADP; 2.1A {Aquifex aeolicus} PDB: 2v2v_A* 2v2q_A* 2v34_A* 2v2z_A* 2vf3_A*	Back alignment and structure

>2gs8_A Mevalonate pyrophosphate decarboxylase; streptococcus pyogen structural genomics, PSI, protein structure initiative; HET: MSE; 1.50A {Streptococcus pyogenes m1 gas}	Back alignment and structure

>3qt5_A Mevalonate diphosphate decarboxylase; GHMP kinase family, lyase; 1.85A {Staphylococcus epidermidis} PDB: 3qt6_A* 3qt7_A* 4dpt_A* 4du7_A* 4dpu_A* 3qt8_A* 4dpx_A 4dpy_A* 4du8_A* 4dpw_A* 2hk2_A 2hk3_A	Back alignment and structure

>1h72_C HK, homoserine kinase; transferase, threonine biosynthesis; HET: ANP; 1.8A {Methanococcus jannaschii} SCOP: d.14.1.5 d.58.26.1 PDB: 1fwl_A 1fwk_A* 1h73_A* 1h74_A*	Back alignment and structure

>1uek_A 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase; non-mevalonate pathway, GHMP superfamily; 1.70A {Thermus thermophilus} SCOP: d.14.1.5 d.58.26.5	Back alignment and structure

>3pyf_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; transferase; HET: ANP; 1.70A {Mycobacterium tuberculosis} PDB: 3pyd_A* 3pye_A* 3pyg_A* 4ed4_A* 4dxl_A* 4emd_A*	Back alignment and structure

>1fi4_A Mevalonate 5-diphosphate decarboxylase; mixed alpha/beta structure, ATP binding, CHOL biosynthesis, structural genomics, PSI; 2.27A {Saccharomyces cerevisiae} SCOP: d.14.1.5 d.58.26.2	Back alignment and structure

>3hul_A HSK, HK, homoserine kinase; structural genomics, putative homoserine kinase, THRB, amino-acid biosynthesis, ATP-binding, cytoplasm; 2.19A {Listeria monocytogenes}	Back alignment and structure

>2hke_A Diphosphomevalonate decarboxylase, putative; mevalonate diphosphate decarboxylase, lyase; 1.80A {Trypanosoma brucei}	Back alignment and structure

>3lto_A Mevalonate diphosphate decarboxylase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.27A {Legionella pneumophila}	Back alignment and structure

>3f0n_A Mevalonate pyrophosphate decarboxylase; cholesterol biosynthesis, lipid synthesis, lyase, steroid biosynthesis, sterol biosynthesis; 1.90A {Mus musculus} PDB: 3d4j_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		162
d1piea1		205	d.14.1.5 (A:9-213) Galactokinase {Lactococcus lact	1e-14
d1kvka1		225	d.14.1.5 (A:1-225) Mevalonate kinase {Rat (Rattus	7e-13
d1wuua1		215	d.14.1.5 (A:2-216) Galactokinase {Human (Homo sapi	6e-12
d1kkha1		180	d.14.1.5 (A:1-180) Mevalonate kinase {Archaeon Met	5e-09
d1s4ea1		176	d.14.1.5 (A:5-180) Galactokinase {Archaeon Pyrococ	9e-08

>d1piea1 d.14.1.5 (A:9-213) Galactokinase {Lactococcus lactis [TaxId: 1358]} Length = 205	Back information, alignment and structure


class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S5 domain 2-like
superfamily: Ribosomal protein S5 domain 2-like
family: GHMP Kinase, N-terminal domain
domain: Galactokinase
species: Lactococcus lactis [TaxId: 1358]

 Score = 66.0 bits (160), Expect = 1e-14
 Identities = 41/151 (27%), Positives = 60/151 (39%), Gaps = 19/151 (12%)

Query: 12  LKEMRNKVSEMSGRDAEEVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGD 71
           L  +  K +E+ G D +EV    SP RI  +G H D+ GG V   +I  G         D
Sbjct: 3   LSALTEKFAEVFG-DTKEVEYFFSPGRINLIGEHTDYNGGYVFPASITIGTTGLARLRED 61

Query: 72  TEVVLRSGQFDGEVRFRIDEIQQPTNSVKKHHAVYASDSAKIKEECKWGNYARGALYALQ 131
            +V L S  F        D                  D  + K+   W NY +G +  L+
Sbjct: 62  KKVKLYSENFPKLGVIEFDL-----------------DEVEKKDGELWSNYVKGMIVMLK 104

Query: 132 SRGNILTEGIIGYICGSDNLDSSGLSSSAAC 162
             G  + +G    +   +   +SGLSSSA+ 
Sbjct: 105 GAGYEIDKGFE-LLIKGEIPTASGLSSSASL 134

PyMOL of d1piea1

>d1kvka1 d.14.1.5 (A:1-225) Mevalonate kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 225	Back information, alignment and structure

>d1wuua1 d.14.1.5 (A:2-216) Galactokinase {Human (Homo sapiens) [TaxId: 9606]} Length = 215	Back information, alignment and structure

>d1kkha1 d.14.1.5 (A:1-180) Mevalonate kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 180	Back information, alignment and structure

>d1s4ea1 d.14.1.5 (A:5-180) Galactokinase {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 176	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		162
d1piea1		205	Galactokinase {Lactococcus lactis [TaxId: 1358]}	100.0
d1wuua1		215	Galactokinase {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1s4ea1		176	Galactokinase {Archaeon Pyrococcus furiosus [TaxId	99.95
d1kkha1		180	Mevalonate kinase {Archaeon Methanococcus jannasch	99.92
d1kvka1		225	Mevalonate kinase {Rat (Rattus norvegicus) [TaxId:	99.91
d1k47a1		194	Phosphomevalonate kinase (PMK) {Streptococcus pneu	99.75
d1h72c1		163	Homoserine kinase {Archaeon Methanococcus jannasch	98.77
d1ueka1		148	4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol k	97.08
d1oj4a1		163	4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol k	96.87

>d1piea1 d.14.1.5 (A:9-213) Galactokinase {Lactococcus lactis [TaxId: 1358]}	Back information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S5 domain 2-like
superfamily: Ribosomal protein S5 domain 2-like
family: GHMP Kinase, N-terminal domain
domain: Galactokinase
species: Lactococcus lactis [TaxId: 1358]

Probab=100.00  E-value=2.7e-35  Score=228.22  Aligned_cols=131  Identities=33%  Similarity=0.440  Sum_probs=114.3

Q ss_pred             HHHHHHHHHHHHhCCCCcceEEEEccceeeccccccccCCceeEEeeeccceEEEEEEcCCCeEEEEeCCCCC--eeEEE
Q 031299           11 ELKEMRNKVSEMSGRDAEEVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDG--EVRFR   88 (162)
Q Consensus        11 ~~~~~~~~f~~~fg~~p~~~~~v~APGRv~L~GEH~Dy~gg~vl~~Ai~~~~~v~~~~~~~~~i~i~s~~~~~--~~~~~   88 (162)
                      .+..+.+.|++.||..|+ +.+++|||||||||||+||+||+||++||++++++.+++++|.++++.+.++++  .++++
T Consensus         2 ~~~~~~~~f~~~f~~~~~-~~~~~aPgRv~L~GeH~Dy~gg~vl~~AI~~~~~v~~~~~~d~~i~i~s~~~~~~~~~~~~   80 (205)
T d1piea1           2 VLSALTEKFAEVFGDTKE-VEYFFSPGRINLIGEHTDYNGGYVFPASITIGTTGLARLREDKKVKLYSENFPKLGVIEFD   80 (205)
T ss_dssp             HHHHHHHHHHHHHSCCCS-CEEEEEEEEEEEECCSCTTTTCEEEEEEEEEEEEEEEEECSSSEEEEEETTCGGGCCEEEE
T ss_pred             HHHHHHHHHHHHhCCCcc-eeEEEcceEEEEecCCeeECCCEeecccccceEEEEEecCCCCeeeeecCCCCccceeecc
Confidence            356789999999999885 457899999999999999999999999999999999999999999999988874  34555


Q ss_pred             cCCCCCCccccccccccccccccccccccCHHHHHHHHHHHHHHcCCCCCCcEEEEEEcccCCCCCCcccccCC
Q 031299           89 IDEIQQPTNSVKKHHAVYASDSAKIKEECKWGNYARGALYALQSRGNILTEGIIGYICGSDNLDSSGLSSSAAC  162 (162)
Q Consensus        89 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~y~~gvl~~l~~~g~~~~~G~~i~i~s~iP~~gsGLsSSAAl  162 (162)
                      +.++..                   .....|.+|+++++..+.+.+..+..||++.|.|+||+ |+|||||||+
T Consensus        81 ~~~~~~-------------------~~~~~~~~~~~~~i~~l~~~~~~~~~G~~i~i~s~iP~-gsGLgSSAAl  134 (205)
T d1piea1          81 LDEVEK-------------------KDGELWSNYVKGMIVMLKGAGYEIDKGFELLIKGEIPT-ASGLSSSASL  134 (205)
T ss_dssp             TTCTTS-------------------CCTTCTHHHHHHHHHHHHHTTCCCCSCEEEEEEECSCT-TSSSCHHHHH
T ss_pred             cccccc-------------------ccccchhHHHHHHHHHHHHhCCccccCeEEEEecCCcc-ccccCccHHH
Confidence            555432                   35779999999999999988776658999999999998 9999999985

PyMOL of d1piea1

>d1wuua1 d.14.1.5 (A:2-216) Galactokinase {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1s4ea1 d.14.1.5 (A:5-180) Galactokinase {Archaeon Pyrococcus furiosus [TaxId: 2261]}	Back information, alignment and structure

>d1kkha1 d.14.1.5 (A:1-180) Mevalonate kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]}	Back information, alignment and structure

>d1kvka1 d.14.1.5 (A:1-225) Mevalonate kinase {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d1k47a1 d.14.1.5 (A:1-194) Phosphomevalonate kinase (PMK) {Streptococcus pneumoniae r6 [TaxId: 171101]}	Back information, alignment and structure

>d1h72c1 d.14.1.5 (C:5-167) Homoserine kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]}	Back information, alignment and structure

>d1ueka1 d.14.1.5 (A:1-148) 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1oj4a1 d.14.1.5 (A:1-163) 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE {Escherichia coli [TaxId: 562]}	Back information, alignment and structure