Citrus Sinensis ID: 031306

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-
Protein Sequence
MASLSITTSIPPPWLTSKSTHHSRRIPSASLILRTGRSSVSVNVAGNNSSPSRPGLLHCSFVSSSLCSSAFHSAFSGLSLGLDFNSNAGVRKEKRQGLVVRAGKAALCQTKRNRSRKSLARTHGFRRRMRTTSGRAILKRRRAKGRWVLCPKSYPNSGKRA
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccEEEEEcccEEEEEEcccccccccccccEEccccccccccccccccccccccEEEEcccccccccccEEEEEccccEEEEccccccHHHHHHHHcccccccccHHHHHHHHHHHcccEEEEccccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEEcccccccccccccccccccccEEEEEEcccccccEEEEccccccccccccEEEEccccccccccccccccccccEEEccccccccccccEEEEEccccHHHcccccccHHHHHHHccHHHccccccHHHHHHHHHHcccEEEcccccccccccc
Coil and Loop (DISEMBL)
maslsittsipppwltsksthhsrripsaslilrtgrssvsvnvagnnsspsrpgllhcsfvssslcssafHSAFSglslgldfnsnagvrkekRQGLVVRAGKAALCQTKRNRSRKSLARTHGFRRRMRTTSGRAILKRRrakgrwvlcpksypnsgkra
Flexible Loop (DISEMBL)
maslsittsipppwltsksthhsrriPSASLILRTGRSSVSVNVAGNNSSPSRPGLLHCSFVSSSLCSSAFHSAFSGLSLGLDFNSNAGVRKekrqglvvragkaalcqtkrnrsrkslarthgfrrrmrttsgrailkrrrakgrwvlcpksypnsgkra
Low Complexity Region (SEG)
MASLSITTSIPPPWLTSKSTHHSRRIPSASLILRTGRssvsvnvagnnsspsRPGllhcsfvssslcssafhsafsGLSLGLDFNSNAGVRKEKRQGLVVRAGKAALCQTKRNRSRKSLARTHGFRRRMRTTSGRAILKRRRAKGRWVLCPKSYPNSGKRA
Disordered region (IsUnstruct)
*******************************************************LLHCSFVSSSLCSSAFHSAFSGLSLGLDFNSNAGV*****QGLVVRAGKAALC****************************IL**RRAKGRWVLC***********
Disordered Region (DISOPRED)
*********IPP*WLTSKSTH****I******************************L***F*****************SLGLDF***************VRAGKA************************************RAKG****************
Disordered Region (DISEMBL)
MASLSITTSIPPPWL**********IPSASLILRTGRSSVSVNVAGNNSSPSRPGLLHCSFVSSSLCSSAFHSAFSGLSLGLDFNSNAGVRKEKRQGLVVRAGKAALCQTKRNRSRKSLARTHGFRRRMRTTSGRAILKRRRAKGRWVLCPKSYPNSGKRA
Disordered Region (DISPRO)
****SITTSIPPPWLTS*****SRRIPSASLILRTGRSSVSVNVA****SPSRPGLLHCSFVSS*****AFHSAFSGLSLGLDFNSNAGVRKEKRQGLVVRAGKAALCQTKR**************RR*RTTS***ILKRRRAKGRWVLCP**********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASLSITTSIPPPWLTSKSTHHSRRIPSASLILRTGRSSVSVNVAGNNSSPSRPGLLHCSFVSSSLCSSAFHSAFSGLSLGLDFNSNAGVRKEKRQGLVVRAGKAALCQTKRNRSRKSLARTHGFRRRMRTTSGRAILKRRRAKGRWVLCPKSYPNSGKRA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	161	2.2.26 [Sep-21-2011]
Q9LP37	157	50S ribosomal protein L34	yes	no	0.801	0.821	0.635	3e-34
P82244	152	50S ribosomal protein L34	N/A	no	0.931	0.986	0.565	9e-30
Q7X5L7	48	50S ribosomal protein L34	N/A	no	0.236	0.791	0.631	4e-06
Q7X5K9	48	50S ribosomal protein L34	yes	no	0.236	0.791	0.631	5e-06
Q7X5L1	48	50S ribosomal protein L34	N/A	no	0.248	0.833	0.6	5e-06
P80340	49	50S ribosomal protein L34	yes	no	0.229	0.755	0.648	8e-06
B5EJJ2	44	50S ribosomal protein L34	yes	no	0.192	0.704	0.774	2e-05
B7J3D6	44	50S ribosomal protein L34	yes	no	0.192	0.704	0.774	2e-05
Q0A4L3	44	50S ribosomal protein L34	yes	no	0.192	0.704	0.741	6e-05
Q04CX6	44	50S ribosomal protein L34	yes	no	0.223	0.818	0.583	0.0004

>sp|Q9LP37|RK34_ARATH 50S ribosomal protein L34, chloroplastic OS=Arabidopsis thaliana GN=RPL34 PE=2 SV=1

 Score =  144 bits (362), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 87/137 (63%), Positives = 105/137 (76%), Gaps = 8/137 (5%)

Query: 26  IPSASLILRTGRSSVSVNVAGNNSSPSRPGLLHCSFVSSSLCSSAFHSAFSGLSLGLDFN 85
           +PSASL LRTG        + + +S +   LLHCSF+SS +   +  S FSGLS+  D +
Sbjct: 28  VPSASLSLRTG----CRRSSSSLTSSASSQLLHCSFLSSPV---SLASPFSGLSIAFDLS 80

Query: 86  SN-AGVRKEKRQGLVVRAGKAALCQTKRNRSRKSLARTHGFRRRMRTTSGRAILKRRRAK 144
           S  +G+  ++R+GLVVRAGKAALCQTKR+RSRKSLARTHGFRRRMRTTSGRA +KRRRAK
Sbjct: 81  SQTSGLNGQRRRGLVVRAGKAALCQTKRSRSRKSLARTHGFRRRMRTTSGRATIKRRRAK 140

Query: 145 GRWVLCPKSYPNSGKRA 161
           GRW LCPKS P+SGKRA
Sbjct: 141 GRWNLCPKSNPSSGKRA 157

This protein binds directly to 23S ribosomal RNA.
Arabidopsis thaliana (taxid: 3702)

>sp|P82244|RK34_SPIOL 50S ribosomal protein L34, chloroplastic OS=Spinacia oleracea GN=RPL34 PE=1 SV=1

 Score =  129 bits (323), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 91/161 (56%), Positives = 112/161 (69%), Gaps = 11/161 (6%)

Query: 1   MASLSITTSIPPPWLTSKSTHHSRRIPSASLILRTGRSSVSVNVAGNNSSPSRPGLLHCS 60
           MA+LS+ ++     +T+       R PSASL   TG  + +  V+ N  S +R G LHCS
Sbjct: 1   MATLSLLSTGVGAAITN-------RTPSASLTFITGSRTTNKRVSFNGGS-ARSGSLHCS 52

Query: 61  FVSSSLCSSAFHSAFSGLSLGLDFNSNAGVRKEKRQGLVVRAGKAALCQTKRNRSRKSLA 120
           F++ S   S+  S FSGLSLGLD  SN GV  ++ +  VVRAGKAALC TKR+RSRKSLA
Sbjct: 53  FLAPS---SSLSSNFSGLSLGLDLTSNTGVSTDRCRRFVVRAGKAALCLTKRSRSRKSLA 109

Query: 121 RTHGFRRRMRTTSGRAILKRRRAKGRWVLCPKSYPNSGKRA 161
           RTHGFR RM TTSGRA+LKRRRAKGR +LC K+ P+SGKRA
Sbjct: 110 RTHGFRLRMSTTSGRALLKRRRAKGRKILCTKTNPSSGKRA 150

This protein binds directly to 23S ribosomal RNA.

Spinacia oleracea (taxid: 3562)

>sp|Q7X5L7|RL34_THEBO 50S ribosomal protein L34 OS=Thermus brockianus GN=rpmH PE=3 SV=1

 Score = 50.4 bits (119), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 24/38 (63%), Positives = 29/38 (76%)

Query: 115 SRKSLARTHGFRRRMRTTSGRAILKRRRAKGRWVLCPK 152
           +R+  A+THGFR RM+T  GR +LKRRR KGRW L PK
Sbjct: 8   NRRKRAKTHGFRARMKTPGGRKVLKRRRQKGRWRLTPK 45

Thermus brockianus (taxid: 56956)

>sp|Q7X5K9|RL34_THESC 50S ribosomal protein L34 OS=Thermus scotoductus GN=rpmH PE=3 SV=1

 Score = 50.4 bits (119), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 24/38 (63%), Positives = 29/38 (76%)

Query: 115 SRKSLARTHGFRRRMRTTSGRAILKRRRAKGRWVLCPK 152
           +R+  A+THGFR RMRT  GR +LKRRR KGRW L P+
Sbjct: 8   NRRKRAKTHGFRARMRTPGGRKVLKRRRQKGRWRLTPR 45

Thermus scotoductus (taxid: 37636)

>sp|Q7X5L1|RL34_THEOS 50S ribosomal protein L34 OS=Thermus oshimai GN=rpmH PE=3 SV=1

 Score = 50.1 bits (118), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 24/40 (60%), Positives = 30/40 (75%)

Query: 115 SRKSLARTHGFRRRMRTTSGRAILKRRRAKGRWVLCPKSY 154
           +R+  A+THGFR RMRT  GR +LKRRR KGRW L P+ +
Sbjct: 8   NRRKRAKTHGFRARMRTPGGRKVLKRRRQKGRWRLTPRVH 47

Thermus oshimai (taxid: 56957)

>sp|P80340|RL34_THET8 50S ribosomal protein L34 OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=rpmH PE=1 SV=3

 Score = 49.7 bits (117), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 24/37 (64%), Positives = 28/37 (75%)

Query: 115 SRKSLARTHGFRRRMRTTSGRAILKRRRAKGRWVLCP 151
           +R+  A+THGFR RMRT  GR +LKRRR KGRW L P
Sbjct: 8   NRRKRAKTHGFRARMRTPGGRKVLKRRRQKGRWRLTP 44

Found on the solvent side of the large subunit.

Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) (taxid: 300852)

>sp|B5EJJ2|RL34_ACIF5 50S ribosomal protein L34 OS=Acidithiobacillus ferrooxidans (strain ATCC 53993) GN=rpmH PE=3 SV=1

 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/31 (77%), Positives = 25/31 (80%)

Query: 121 RTHGFRRRMRTTSGRAILKRRRAKGRWVLCP 151
           RTHGFR RM T SGR +LKRRRAKGR  LCP
Sbjct: 14  RTHGFRARMATKSGRLVLKRRRAKGRQRLCP 44

Acidithiobacillus ferrooxidans (strain ATCC 53993) (taxid: 380394)

>sp|B7J3D6|RL34_ACIF2 50S ribosomal protein L34 OS=Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / NCIB 8455) GN=rpmH PE=3 SV=1

 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/31 (77%), Positives = 25/31 (80%)

Query: 121 RTHGFRRRMRTTSGRAILKRRRAKGRWVLCP 151
           RTHGFR RM T SGR +LKRRRAKGR  LCP
Sbjct: 14  RTHGFRARMATKSGRLVLKRRRAKGRQRLCP 44

Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / NCIB 8455) (taxid: 243159)

>sp|Q0A4L3|RL34_ALHEH 50S ribosomal protein L34 OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=rpmH PE=3 SV=1

 Score = 46.6 bits (109), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 23/31 (74%), Positives = 25/31 (80%)

Query: 121 RTHGFRRRMRTTSGRAILKRRRAKGRWVLCP 151
           RTHGFR RM T +GRA+L RRRAKGR  LCP
Sbjct: 14  RTHGFRARMATKNGRAVLARRRAKGRHRLCP 44

Alkalilimnicola ehrlichei (strain MLHE-1) (taxid: 187272)

>sp|Q04CX6|RL34_OENOB 50S ribosomal protein L34 OS=Oenococcus oeni (strain ATCC BAA-331 / PSU-1) GN=rpmH PE=3 SV=1

 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 21/36 (58%), Positives = 26/36 (72%)

Query: 115 SRKSLARTHGFRRRMRTTSGRAILKRRRAKGRWVLC 150
            ++ L R HGFR+RM T +GR +L RRRAKGR VL 
Sbjct: 8   KKRHLQRVHGFRKRMSTANGRKVLARRRAKGRKVLA 43

Oenococcus oeni (strain ATCC BAA-331 / PSU-1) (taxid: 203123)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	161
225443829	148	PREDICTED: 50S ribosomal protein L34, ch	0.888	0.966	0.673	2e-42
297740487	113	unnamed protein product [Vitis vinifera]	0.689	0.982	0.769	6e-39
255563108	161	50S ribosomal protein L34, chloroplast p	0.950	0.950	0.697	5e-37
297845818	159	ribosomal protein L34 family protein [Ar	0.813	0.823	0.642	5e-33
15218810	157	50S ribosomal protein L34 [Arabidopsis t	0.801	0.821	0.635	2e-32
449433766	155	PREDICTED: 50S ribosomal protein L34, ch	0.944	0.980	0.591	3e-32
224116920	131	predicted protein [Populus trichocarpa]	0.795	0.977	0.718	3e-31
147767567	148	hypothetical protein VITISV_036402 [Viti	0.546	0.594	0.829	6e-31
14285713	152	RecName: Full=50S ribosomal protein L34,	0.931	0.986	0.565	5e-28
357446965	144	50S ribosomal protein L34 [Medicago trun	0.695	0.777	0.651	1e-24

>gi|225443829|ref|XP_002274637.1| PREDICTED: 50S ribosomal protein L34, chloroplastic-like [Vitis vinifera]

 Score =  176 bits (447), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 105/156 (67%), Positives = 117/156 (75%), Gaps = 13/156 (8%)

Query: 9   SIPPPWLTSKSTHHSRRIPSASLILRTG---RSSVSVNVAGNNSSPSRPGLLHCSFVSSS 65
           SI   W+ S     SR +PSASL L  G   RS  S+N+  N   P+ P LLHCSF  + 
Sbjct: 3   SISVSWVCS-----SRAVPSASLSLLAGSKRRSLASLNMRNN---PTSPALLHCSFTPT- 53

Query: 66  LCSSAFHSAFSGLSLGLDFNSNAGVRKEKRQGLVVRAGKAALCQTKRNRSRKSLARTHGF 125
             S +F S+FSGLSLGLD NS+ GVRKE+  GLVVRAGKAALCQTKRNRSRKSLARTHGF
Sbjct: 54  -VSLSFPSSFSGLSLGLDLNSSVGVRKERGHGLVVRAGKAALCQTKRNRSRKSLARTHGF 112

Query: 126 RRRMRTTSGRAILKRRRAKGRWVLCPKSYPNSGKRA 161
           RRRMRTTSGRA+LKRRRAKGR VLC KS P+SGKRA
Sbjct: 113 RRRMRTTSGRAVLKRRRAKGRKVLCTKSNPSSGKRA 148

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297740487|emb|CBI30669.3| unnamed protein product [Vitis vinifera]

 Score =  165 bits (417), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 87/113 (76%), Positives = 97/113 (85%), Gaps = 2/113 (1%)

Query: 49  SSPSRPGLLHCSFVSSSLCSSAFHSAFSGLSLGLDFNSNAGVRKEKRQGLVVRAGKAALC 108
           ++P+ P LLHCSF  +   S +F S+FSGLSLGLD NS+ GVRKE+  GLVVRAGKAALC
Sbjct: 3   NNPTSPALLHCSFTPT--VSLSFPSSFSGLSLGLDLNSSVGVRKERGHGLVVRAGKAALC 60

Query: 109 QTKRNRSRKSLARTHGFRRRMRTTSGRAILKRRRAKGRWVLCPKSYPNSGKRA 161
           QTKRNRSRKSLARTHGFRRRMRTTSGRA+LKRRRAKGR VLC KS P+SGKRA
Sbjct: 61  QTKRNRSRKSLARTHGFRRRMRTTSGRAVLKRRRAKGRKVLCTKSNPSSGKRA 113

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255563108|ref|XP_002522558.1| 50S ribosomal protein L34, chloroplast precursor, putative [Ricinus communis] gi|223538249|gb|EEF39858.1| 50S ribosomal protein L34, chloroplast precursor, putative [Ricinus communis]

 Score =  159 bits (401), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 113/162 (69%), Positives = 127/162 (78%), Gaps = 9/162 (5%)

Query: 2   ASLSITTSIPPP-WLTSKSTHHSRRIPSASLILRTG---RSSVSVNVAGNNSSPSRPGLL 57
           ASLS  +S PPP W++S+S   + R PSASL L TG   R+  S+NV  N  S SR GLL
Sbjct: 3   ASLSTISSAPPPQWMSSRS-QQTARCPSASLSLSTGTRPRNKFSMNVISN--STSRSGLL 59

Query: 58  HCSFVSSSLCSSAFHSAFSGLSLGLDFNSNAGVRKEKRQGLVVRAGKAALCQTKRNRSRK 117
           HCSF+S+S  S +  S+FSGLSLGLD NS+ GVRK +  GLVVRAGKAALCQTKRNRSRK
Sbjct: 60  HCSFLSTS--SLSLSSSFSGLSLGLDLNSSTGVRKGRGYGLVVRAGKAALCQTKRNRSRK 117

Query: 118 SLARTHGFRRRMRTTSGRAILKRRRAKGRWVLCPKSYPNSGK 159
           SLARTHGFRRRMRTTSGRA+LKRRRAKGR VLC KS PNSGK
Sbjct: 118 SLARTHGFRRRMRTTSGRAVLKRRRAKGRKVLCTKSNPNSGK 159

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297845818|ref|XP_002890790.1| ribosomal protein L34 family protein [Arabidopsis lyrata subsp. lyrata] gi|297336632|gb|EFH67049.1| ribosomal protein L34 family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  145 bits (367), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 88/137 (64%), Positives = 104/137 (75%), Gaps = 6/137 (4%)

Query: 26  IPSASLILRTGRSSVSVNVAGNNSSPSRPGLLHCSFVSSSLCSSAFHSAFSGLSLGLDFN 85
           +PSASL LRTG  S     +   +S +   LLHCSF+SS L   +  S FSGLS+  D +
Sbjct: 28  VPSASLSLRTG--SRQSPSSSLLTSSASSQLLHCSFLSSPL---SLASPFSGLSIAFDLS 82

Query: 86  SN-AGVRKEKRQGLVVRAGKAALCQTKRNRSRKSLARTHGFRRRMRTTSGRAILKRRRAK 144
           S  +G+  ++ +GLVVRAGKAALCQTKR+RSRKSLARTHGFRRRMRTTSGRA +KRRRAK
Sbjct: 83  SQTSGLNSQRHRGLVVRAGKAALCQTKRSRSRKSLARTHGFRRRMRTTSGRATIKRRRAK 142

Query: 145 GRWVLCPKSYPNSGKRA 161
           GRW LCPKS P+SGKRA
Sbjct: 143 GRWNLCPKSNPSSGKRA 159

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15218810|ref|NP_174202.1| 50S ribosomal protein L34 [Arabidopsis thaliana] gi|75311421|sp|Q9LP37.1|RK34_ARATH RecName: Full=50S ribosomal protein L34, chloroplastic; AltName: Full=CL34; Flags: Precursor gi|9502428|gb|AAF88127.1|AC021043_20 Putative ribosomal protein L34 [Arabidopsis thaliana] gi|17380840|gb|AAL36232.1| putative plastid ribosomal protein L34 precursor [Arabidopsis thaliana] gi|20259639|gb|AAM14176.1| putative plastid ribosomal protein L34 precursor [Arabidopsis thaliana] gi|21536900|gb|AAM61232.1| plastid ribosomal protein L34 precursor, putative [Arabidopsis thaliana] gi|332192918|gb|AEE31039.1| 50S ribosomal protein L34 [Arabidopsis thaliana]

 Score =  144 bits (362), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 87/137 (63%), Positives = 105/137 (76%), Gaps = 8/137 (5%)

Query: 26  IPSASLILRTGRSSVSVNVAGNNSSPSRPGLLHCSFVSSSLCSSAFHSAFSGLSLGLDFN 85
           +PSASL LRTG        + + +S +   LLHCSF+SS +   +  S FSGLS+  D +
Sbjct: 28  VPSASLSLRTG----CRRSSSSLTSSASSQLLHCSFLSSPV---SLASPFSGLSIAFDLS 80

Query: 86  SN-AGVRKEKRQGLVVRAGKAALCQTKRNRSRKSLARTHGFRRRMRTTSGRAILKRRRAK 144
           S  +G+  ++R+GLVVRAGKAALCQTKR+RSRKSLARTHGFRRRMRTTSGRA +KRRRAK
Sbjct: 81  SQTSGLNGQRRRGLVVRAGKAALCQTKRSRSRKSLARTHGFRRRMRTTSGRATIKRRRAK 140

Query: 145 GRWVLCPKSYPNSGKRA 161
           GRW LCPKS P+SGKRA
Sbjct: 141 GRWNLCPKSNPSSGKRA 157

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449433766|ref|XP_004134668.1| PREDICTED: 50S ribosomal protein L34, chloroplastic-like [Cucumis sativus] gi|449479241|ref|XP_004155546.1| PREDICTED: 50S ribosomal protein L34, chloroplastic-like [Cucumis sativus]

 Score =  142 bits (359), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 97/164 (59%), Positives = 120/164 (73%), Gaps = 12/164 (7%)

Query: 1   MASLSITTSIPPPWLTSKSTHHSRRIPSASLILRTG---RSSVSVNVAGNNSSPSRPGLL 57
           MA++S+   +  PW+++ +   + R+PSASL+  TG     SVS+N   NNS+  R GLL
Sbjct: 1   MAAISV---LSTPWVSTGAI--AVRVPSASLVFSTGSRGYCSVSLNTVNNNSA--RSGLL 53

Query: 58  HCSFVSSSLCSSAFHSAFSGLSLGLDFNSNAGVRKEKRQGLVVRAGKAALCQTKRNRSRK 117
           HCSF+ SS  S +   +   L L  D++S  GV + K +GLVVRAGKAALCQTKRNRSRK
Sbjct: 54  HCSFLPSSSLSCSSSFSGLSLGL--DWSSKVGVGQGKGRGLVVRAGKAALCQTKRNRSRK 111

Query: 118 SLARTHGFRRRMRTTSGRAILKRRRAKGRWVLCPKSYPNSGKRA 161
           SLARTHGFRRRMRTT+GRA+LKRRRAKGR VLC KS P+SGKRA
Sbjct: 112 SLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA 155

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224116920|ref|XP_002317427.1| predicted protein [Populus trichocarpa] gi|222860492|gb|EEE98039.1| predicted protein [Populus trichocarpa]

 Score =  139 bits (351), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 97/135 (71%), Positives = 108/135 (80%), Gaps = 7/135 (5%)

Query: 28  SASLILRTG---RSSVSVNVAGNNSSPSRPGLLHCSFVSSSLCSSAFHSAFSGLSLGLDF 84
           SASL L +G   +   S+NVA N  S +R GLLHCSF+ SS  S +  S+FSGLSLGLD 
Sbjct: 1   SASLSLISGSRTKRGFSMNVATN--STTRSGLLHCSFLPSS--SLSLPSSFSGLSLGLDL 56

Query: 85  NSNAGVRKEKRQGLVVRAGKAALCQTKRNRSRKSLARTHGFRRRMRTTSGRAILKRRRAK 144
           NSN GVRK+  +GLVVRAGKAALC TKR+RSRKSLARTHGFRRRMRTTSGRA+LKRRRAK
Sbjct: 57  NSNIGVRKDIGRGLVVRAGKAALCLTKRSRSRKSLARTHGFRRRMRTTSGRAVLKRRRAK 116

Query: 145 GRWVLCPKSYPNSGK 159
           GR VLC KS PNSGK
Sbjct: 117 GRKVLCTKSNPNSGK 131

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147767567|emb|CAN60201.1| hypothetical protein VITISV_036402 [Vitis vinifera]

 Score =  138 bits (348), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 73/88 (82%), Positives = 78/88 (88%)

Query: 74  AFSGLSLGLDFNSNAGVRKEKRQGLVVRAGKAALCQTKRNRSRKSLARTHGFRRRMRTTS 133
            +  LSLGLD NS+ GVRKE+  GLVVRAGKAALCQTKRNRSRKSLARTHGFRRRMRTTS
Sbjct: 61  VWECLSLGLDLNSSVGVRKERGHGLVVRAGKAALCQTKRNRSRKSLARTHGFRRRMRTTS 120

Query: 134 GRAILKRRRAKGRWVLCPKSYPNSGKRA 161
           GRA+LKRRRAKGR VLC KS P+SGKRA
Sbjct: 121 GRAVLKRRRAKGRKVLCTKSNPSSGKRA 148

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|14285713|sp|P82244.1|RK34_SPIOL RecName: Full=50S ribosomal protein L34, chloroplastic; AltName: Full=CL34; Flags: Precursor gi|189096152|pdb|3BBO|4 Chain 4, Homology Model For The Spinach Chloroplast 50s Subunit Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome gi|7578860|gb|AAF64157.1|AF238221_1 plastid ribosomal protein L34 precursor [Spinacia oleracea]

 Score =  129 bits (323), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 91/161 (56%), Positives = 112/161 (69%), Gaps = 11/161 (6%)

Query: 1   MASLSITTSIPPPWLTSKSTHHSRRIPSASLILRTGRSSVSVNVAGNNSSPSRPGLLHCS 60
           MA+LS+ ++     +T+       R PSASL   TG  + +  V+ N  S +R G LHCS
Sbjct: 1   MATLSLLSTGVGAAITN-------RTPSASLTFITGSRTTNKRVSFNGGS-ARSGSLHCS 52

Query: 61  FVSSSLCSSAFHSAFSGLSLGLDFNSNAGVRKEKRQGLVVRAGKAALCQTKRNRSRKSLA 120
           F++ S   S+  S FSGLSLGLD  SN GV  ++ +  VVRAGKAALC TKR+RSRKSLA
Sbjct: 53  FLAPS---SSLSSNFSGLSLGLDLTSNTGVSTDRCRRFVVRAGKAALCLTKRSRSRKSLA 109

Query: 121 RTHGFRRRMRTTSGRAILKRRRAKGRWVLCPKSYPNSGKRA 161
           RTHGFR RM TTSGRA+LKRRRAKGR +LC K+ P+SGKRA
Sbjct: 110 RTHGFRLRMSTTSGRALLKRRRAKGRKILCTKTNPSSGKRA 150

Source: Spinacia oleracea

Species: Spinacia oleracea

Genus: Spinacia

Family: Amaranthaceae

Order: Caryophyllales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357446965|ref|XP_003593758.1| 50S ribosomal protein L34 [Medicago truncatula] gi|355482806|gb|AES64009.1| 50S ribosomal protein L34 [Medicago truncatula]

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 73/112 (65%), Positives = 85/112 (75%)

Query: 48  NSSPSRPGLLHCSFVSSSLCSSAFHSAFSGLSLGLDFNSNAGVRKEKRQGLVVRAGKAAL 107
           NSS  R  LLHCSF SS    S   S+ SGLSLGLD   N G R++  + ++V AG+ AL
Sbjct: 33  NSSKFRSPLLHCSFTSSPTSLSFNSSSISGLSLGLDLKPNVGPRRQNGRLVIVAAGRQAL 92

Query: 108 CQTKRNRSRKSLARTHGFRRRMRTTSGRAILKRRRAKGRWVLCPKSYPNSGK 159
           C TKR+RSRKSLARTHGFR+RM TT+GRA+LKRRRAKGR VLC KS+PNSGK
Sbjct: 93  CLTKRSRSRKSLARTHGFRKRMSTTTGRAVLKRRRAKGRKVLCTKSHPNSGK 144

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	161
TAIR|locus:2029944	157	AT1G29070 [Arabidopsis thalian	0.956	0.980	0.493	6.9e-31
TIGR_CMR|ECH_0440	44	ECH_0440 "ribosomal protein L3	0.223	0.818	0.638	7e-06
TIGR_CMR|CBU_1917	44	CBU_1917 "ribosomal protein L3	0.198	0.727	0.625	9e-06
TIGR_CMR|CHY_0001	44	CHY_0001 "ribosomal protein L3	0.198	0.727	0.6	1.1e-05
TIGR_CMR|NSE_0856	44	NSE_0856 "ribosomal protein L3	0.186	0.681	0.666	1.1e-05
TIGR_CMR|APH_0309	44	APH_0309 "ribosomal protein L3	0.223	0.818	0.611	1.5e-05
TIGR_CMR|CPS_5053	44	CPS_5053 "ribosomal protein L3	0.161	0.590	0.692	3.9e-05
TIGR_CMR|SO_0007	45	SO_0007 "ribosomal protein L34	0.192	0.688	0.617	5e-05
ASPGD|ASPL0000075007	138	AN11230 [Emericella nidulans (	0.211	0.246	0.588	6.3e-05
UNIPROTKB|P0A7P5	46	rpmH "50S ribosomal subunit pr	0.161	0.565	0.692	6.3e-05

TAIR|locus:2029944 AT1G29070 [Arabidopsis thaliana (taxid:3702)]

 Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
 Identities = 81/164 (49%), Positives = 96/164 (58%)

Query:     1 MASLS--ITTSIPPPWLTSKSTHHSRRIPSASLILRTGRXXXXXXXXXXXXXXXRPGXXX 58
             MASLS  +  S         +++    +PSASL LRTG                      
Sbjct:     1 MASLSTSVVASASSRLWNPAASNGKICVPSASLSLRTGCRRSSSSLTSSASSQL------ 54

Query:    59 XXXXXXXXXXXXXXXXXXGLSLGLDFNSN-AGVRKEKRQGLVVRAGKAALCQTKRNRSRK 117
                               GLS+  D +S  +G+  ++R+GLVVRAGKAALCQTKR+RSRK
Sbjct:    55 -LHCSFLSSPVSLASPFSGLSIAFDLSSQTSGLNGQRRRGLVVRAGKAALCQTKRSRSRK 113

Query:   118 SLARTHGFRRRMRTTSGRAILKRRRAKGRWVLCPKSYPNSGKRA 161
             SLARTHGFRRRMRTTSGRA +KRRRAKGRW LCPKS P+SGKRA
Sbjct:   114 SLARTHGFRRRMRTTSGRATIKRRRAKGRWNLCPKSNPSSGKRA 157

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0042254 "ribosome biogenesis" evidence=ISS

TIGR_CMR|ECH_0440 ECH_0440 "ribosomal protein L34" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)]

 Score = 104 (41.7 bits), Expect = 7.0e-06, P = 7.0e-06
 Identities = 23/36 (63%), Positives = 24/36 (66%)

Query:   115 SRKSLARTHGFRRRMRTTSGRAILKRRRAKGRWVLC 150
             SR    R HGFR RM T  GR IL RRRA+GR VLC
Sbjct:     8 SRIVRKRRHGFRSRMSTKMGRRILNRRRAQGRRVLC 43

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0015934 "large ribosomal subunit" evidence=ISS

TIGR_CMR|CBU_1917 CBU_1917 "ribosomal protein L34" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 103 (41.3 bits), Expect = 9.0e-06, P = 9.0e-06
 Identities = 20/32 (62%), Positives = 24/32 (75%)

Query:   115 SRKSLARTHGFRRRMRTTSGRAILKRRRAKGR 146
             S++   RTHGFR RM T +GR +L RRRAKGR
Sbjct:     8 SKQKRNRTHGFRARMATKNGRQVLNRRRAKGR 39

GO:0003735 "structural constituent of ribosome" evidence=ISS

TIGR_CMR|CHY_0001 CHY_0001 "ribosomal protein L34" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 102 (41.0 bits), Expect = 1.1e-05, P = 1.1e-05
 Identities = 21/35 (60%), Positives = 25/35 (71%)

Query:   112 RNRSRKSLARTHGFRRRMRTTSGRAILKRRRAKGR 146
             +NR RK   R HGF +RMRT  GR ++KRRR KGR
Sbjct:     8 KNRRRK---RVHGFLKRMRTPGGRNVIKRRRLKGR 39

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

TIGR_CMR|NSE_0856 NSE_0856 "ribosomal protein L34" [Neorickettsia sennetsu str. Miyayama (taxid:222891)]

 Score = 102 (41.0 bits), Expect = 1.1e-05, P = 1.1e-05
 Identities = 20/30 (66%), Positives = 22/30 (73%)

Query:   121 RTHGFRRRMRTTSGRAILKRRRAKGRWVLC 150
             R HGFR RM + SGRAI+  RR KGR VLC
Sbjct:    14 RRHGFRARMASKSGRAIINNRRRKGRHVLC 43

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

TIGR_CMR|APH_0309 APH_0309 "ribosomal protein L34" [Anaplasma phagocytophilum HZ (taxid:212042)]

 Score = 101 (40.6 bits), Expect = 1.5e-05, P = 1.5e-05
 Identities = 22/36 (61%), Positives = 24/36 (66%)

Query:   115 SRKSLARTHGFRRRMRTTSGRAILKRRRAKGRWVLC 150
             SR    R HGFR RM T  GR IL RRRA+GR +LC
Sbjct:     8 SRIVRKRRHGFRARMSTKWGRRILNRRRAQGRSILC 43

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

TIGR_CMR|CPS_5053 CPS_5053 "ribosomal protein L34" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 97 (39.2 bits), Expect = 3.9e-05, P = 3.9e-05
 Identities = 18/26 (69%), Positives = 21/26 (80%)

Query:   121 RTHGFRRRMRTTSGRAILKRRRAKGR 146
             R HGFR RM T +GRA++ RRRAKGR
Sbjct:    14 RNHGFRARMATKNGRAVIARRRAKGR 39

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0015934 "large ribosomal subunit" evidence=ISS

TIGR_CMR|SO_0007 SO_0007 "ribosomal protein L34" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 96 (38.9 bits), Expect = 5.0e-05, P = 5.0e-05
 Identities = 21/34 (61%), Positives = 23/34 (67%)

Query:   113 NRSRKSLARTHGFRRRMRTTSGRAILKRRRAKGR 146
             N  RK   R+HGFR RM T  GR +L RRRAKGR
Sbjct:    10 NLKRK---RSHGFRARMATAGGRKVLARRRAKGR 40

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

ASPGD|ASPL0000075007 AN11230 [Emericella nidulans (taxid:162425)]

 Score = 95 (38.5 bits), Expect = 6.3e-05, P = 6.3e-05
 Identities = 20/34 (58%), Positives = 24/34 (70%)

Query:   113 NRSRKSLARTHGFRRRMRTTSGRAILKRRRAKGR 146
             N SR+   R HGF  R+R+ SG+ IL RRRAKGR
Sbjct:   100 NPSRRVQKRRHGFLARLRSKSGQKILARRRAKGR 133

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

UNIPROTKB|P0A7P5 rpmH "50S ribosomal subunit protein L34" [Escherichia coli K-12 (taxid:83333)]

 Score = 95 (38.5 bits), Expect = 6.3e-05, P = 6.3e-05
 Identities = 18/26 (69%), Positives = 21/26 (80%)

Query:   121 RTHGFRRRMRTTSGRAILKRRRAKGR 146
             R+HGFR RM T +GR +L RRRAKGR
Sbjct:    14 RSHGFRARMATKNGRQVLARRRAKGR 39

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P82244	RK34_SPIOL	No assigned EC number	0.5652	0.9316	0.9868	N/A	no
B5EJJ2	RL34_ACIF5	No assigned EC number	0.7741	0.1925	0.7045	yes	no
C1CZV9	RL34_DEIDV	No assigned EC number	0.7096	0.1925	0.6595	yes	no
Q9LP37	RK34_ARATH	No assigned EC number	0.6350	0.8012	0.8216	yes	no
B7J3D6	RL34_ACIF2	No assigned EC number	0.7741	0.1925	0.7045	yes	no
Q0A4L3	RL34_ALHEH	No assigned EC number	0.7419	0.1925	0.7045	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	161
pfam00468	44	pfam00468, Ribosomal_L34, Ribosomal protein L34	1e-10
PRK00399	44	PRK00399, rpmH, 50S ribosomal protein L34; Reviewe	7e-10
COG0230	44	COG0230, RpmH, Ribosomal protein L34 [Translation,	3e-08
TIGR01030	44	TIGR01030, rpmH_bact, ribosomal protein L34, bacte	2e-05

>gnl|CDD|201247 pfam00468, Ribosomal_L34, Ribosomal protein L34

 Score = 53.3 bits (129), Expect = 1e-10
 Identities = 22/36 (61%), Positives = 25/36 (69%)

Query: 115 SRKSLARTHGFRRRMRTTSGRAILKRRRAKGRWVLC 150
           S +   RTHGFR RM T +GR +LKRRRAKGR  L 
Sbjct: 8   SNRKRKRTHGFRARMATKNGRKVLKRRRAKGRKRLT 43

Length = 44

>gnl|CDD|179004 PRK00399, rpmH, 50S ribosomal protein L34; Reviewed

 Score = 51.3 bits (124), Expect = 7e-10
 Identities = 23/38 (60%), Positives = 25/38 (65%), Gaps = 3/38 (7%)

Query: 113 NRSRKSLARTHGFRRRMRTTSGRAILKRRRAKGRWVLC 150
            R RK   RTHGFR RM T +GR +L RRRAKGR  L 
Sbjct: 9   KRKRK---RTHGFRARMATKNGRKVLARRRAKGRKRLS 43

Length = 44

>gnl|CDD|223308 COG0230, RpmH, Ribosomal protein L34 [Translation, ribosomal structure and biogenesis]

 Score = 46.9 bits (112), Expect = 3e-08
 Identities = 21/35 (60%), Positives = 25/35 (71%)

Query: 115 SRKSLARTHGFRRRMRTTSGRAILKRRRAKGRWVL 149
           S++   RTHGFR RM T +GR +L RRRAKGR  L
Sbjct: 8   SKRKRKRTHGFRARMATKNGRKVLARRRAKGRKRL 42

Length = 44

>gnl|CDD|130102 TIGR01030, rpmH_bact, ribosomal protein L34, bacterial type

 Score = 39.8 bits (93), Expect = 2e-05
 Identities = 20/32 (62%), Positives = 23/32 (71%)

Query: 115 SRKSLARTHGFRRRMRTTSGRAILKRRRAKGR 146
           S     RTHGFR RM T +GR +L+RRRAKGR
Sbjct: 8   SNLKRKRTHGFRARMATKNGRKVLRRRRAKGR 39

This model describes the bacterial protein L34 and its equivalents in organelles [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 44

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	161
COG0230	44	RpmH Ribosomal protein L34 [Translation, ribosomal	99.75
CHL00115	46	rpl34 ribosomal protein L34; Reviewed	99.74
TIGR01030	44	rpmH_bact ribosomal protein L34, bacterial type. T	99.73
PRK00399	44	rpmH 50S ribosomal protein L34; Reviewed	99.73
PF00468	44	Ribosomal_L34: Ribosomal protein L34; InterPro: IP	99.69
KOG4612	105	consensus Mitochondrial ribosomal protein L34 [Tra	99.14

>COG0230 RpmH Ribosomal protein L34 [Translation, ribosomal structure and biogenesis]

Probab=99.75  E-value=5.8e-19  Score=117.43  Aligned_cols=43  Identities=53%  Similarity=0.742  Sum_probs=39.3

Q ss_pred             ccccccccccccccchhhhhhhhhhccChhhHHHHHHHHHcCCceEec
Q 031306          104 KAALCQTKRNRSRKSLARTHGFRRRMRTTSGRAILKRRRAKGRWVLCP  151 (161)
Q Consensus       104 kRtl~~TKR~~sr~kRkR~HGFraRM~T~~GRkVL~RRR~KGRk~Ls~  151 (161)
                      |+||+++++     ||+|+|||++||+|++||+||++||+|||++|++
T Consensus         2 krTyQPs~~-----kRkr~hGFraRM~Tk~GR~vl~~RR~KGR~~Ls~   44 (44)
T COG0230           2 KRTYQPSKR-----KRKRTHGFRARMATKNGRKVLARRRAKGRKRLSV   44 (44)
T ss_pred             CcccCCcch-----hhhhhhhHHHHhcccchHHHHHHHHHcCCcccCC
Confidence            567777666     8999999999999999999999999999999985

>CHL00115 rpl34 ribosomal protein L34; Reviewed

Probab=99.74  E-value=1.1e-18  Score=116.71  Aligned_cols=44  Identities=50%  Similarity=0.696  Sum_probs=39.0

Q ss_pred             ccccccccccccccchhhhhhhhhhccChhhHHHHHHHHHcCCceEecc
Q 031306          104 KAALCQTKRNRSRKSLARTHGFRRRMRTTSGRAILKRRRAKGRWVLCPK  152 (161)
Q Consensus       104 kRtl~~TKR~~sr~kRkR~HGFraRM~T~~GRkVL~RRR~KGRk~Ls~s  152 (161)
                      |+||+++++     ||+|+|||++||+|++||+||++||+||||+|++.
T Consensus         3 KrT~qps~~-----krkr~hGFraRm~T~~GRkvl~rRR~KGRk~L~v~   46 (46)
T CHL00115          3 KRTLSGTKR-----KKVRKSGFRARMATAAGRKILNARRRKGRKKLALR   46 (46)
T ss_pred             ccccCCcce-----eecccccHHHHcCCcchHHHHHHHHHcCCceeecC
Confidence            456666655     88999999999999999999999999999999974

>TIGR01030 rpmH_bact ribosomal protein L34, bacterial type

Probab=99.73  E-value=1.1e-18  Score=115.73  Aligned_cols=43  Identities=49%  Similarity=0.713  Sum_probs=39.3

Q ss_pred             ccccccccccccccchhhhhhhhhhccChhhHHHHHHHHHcCCceEec
Q 031306          104 KAALCQTKRNRSRKSLARTHGFRRRMRTTSGRAILKRRRAKGRWVLCP  151 (161)
Q Consensus       104 kRtl~~TKR~~sr~kRkR~HGFraRM~T~~GRkVL~RRR~KGRk~Ls~  151 (161)
                      |+||+++++     +|+|+|||++||+|++||+||++||+||||+|++
T Consensus         2 krT~qps~~-----kRkr~hGFraRm~T~~GR~vl~rRr~KGRk~Ls~   44 (44)
T TIGR01030         2 KRTYQPSNL-----KRKRTHGFRARMATKNGRKVLRRRRAKGRHKLTV   44 (44)
T ss_pred             CCCCCCcce-----eechhhcHHHHccChhhHHHHHHHHHcCCccccC
Confidence            567777765     8999999999999999999999999999999986

This model describes the bacterial protein L34 and its equivalents in organelles.

>PRK00399 rpmH 50S ribosomal protein L34; Reviewed

Probab=99.73  E-value=1.4e-18  Score=115.28  Aligned_cols=43  Identities=53%  Similarity=0.758  Sum_probs=39.3

Q ss_pred             ccccccccccccccchhhhhhhhhhccChhhHHHHHHHHHcCCceEec
Q 031306          104 KAALCQTKRNRSRKSLARTHGFRRRMRTTSGRAILKRRRAKGRWVLCP  151 (161)
Q Consensus       104 kRtl~~TKR~~sr~kRkR~HGFraRM~T~~GRkVL~RRR~KGRk~Ls~  151 (161)
                      |+||+++++     ||+|+|||++||+|++||+||++||+|||++|++
T Consensus         2 KrT~qps~~-----kr~r~hGFraRm~T~~GRkvl~rRR~KGR~~Lt~   44 (44)
T PRK00399          2 KRTYQPSKR-----KRKRTHGFRARMATKNGRKVLARRRAKGRKRLSA   44 (44)
T ss_pred             CCCCCCcce-----eechhhhHHHHccCcccHHHHHHHHHcCCccccC
Confidence            567777665     8999999999999999999999999999999985

>PF00468 Ribosomal_L34: Ribosomal protein L34; InterPro: IPR000271 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=99.69  E-value=3.7e-18  Score=113.15  Aligned_cols=43  Identities=51%  Similarity=0.736  Sum_probs=35.8

Q ss_pred             ccccccccccccccchhhhhhhhhhccChhhHHHHHHHHHcCCceEec
Q 031306          104 KAALCQTKRNRSRKSLARTHGFRRRMRTTSGRAILKRRRAKGRWVLCP  151 (161)
Q Consensus       104 kRtl~~TKR~~sr~kRkR~HGFraRM~T~~GRkVL~RRR~KGRk~Ls~  151 (161)
                      |+|++++++     +|+|+|||++||+|++||+||++||+|||++|++
T Consensus         2 krT~qps~~-----kr~r~hGFr~Rm~T~~GRkvl~rRr~KGR~~Ls~   44 (44)
T PF00468_consen    2 KRTYQPSNR-----KRKRKHGFRARMSTKNGRKVLKRRRAKGRKRLSV   44 (44)
T ss_dssp             --SS-S-HH-----HHHHHCSHHHHHCSHHHHHHHHHHHCHTSSTSSC
T ss_pred             CCCCCCcee-----eeeccccchhhhcchhHHHHHHHHHHcCCeeccC
Confidence            455666554     8999999999999999999999999999999985

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L34 is one of the proteins from the large subunit of the prokaryotic ribosome. It is a small basic protein of 44 to 51 amino-acid residues []. L34 belongs to a family of ribosomal proteins which, on the basis of sequence similarities, groups: Eubacterial L34, Red algal chloroplast L34 and Cyanelle L34.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3BBO_4 3PIO_2 3PIP_2 3SGF_6 2AW4_2 2AWB_2 2VHM_2 3OFZ_2 3UOS_6 2QOX_2 ....

>KOG4612 consensus Mitochondrial ribosomal protein L34 [Translation, ribosomal structure and biogenesis]

Probab=99.14  E-value=2e-11  Score=93.17  Aligned_cols=39  Identities=41%  Similarity=0.736  Sum_probs=35.1

Q ss_pred             ccccccchhhhhhhhhhccChhhHHHHHHHHHcCCceEe
Q 031306          112 RNRSRKSLARTHGFRRRMRTTSGRAILKRRRAKGRWVLC  150 (161)
Q Consensus       112 R~~sr~kRkR~HGFraRM~T~~GRkVL~RRR~KGRk~Ls  150 (161)
                      .+.+++||||+|||++|.+|++|++||++|+.||||.|+
T Consensus        66 YQPSn~KRKrkhGfl~R~~s~~G~~vl~rR~lKGR~~LS  104 (105)
T KOG4612|consen   66 YQPSNLKRKRKHGFLARAKSKQGSKVLKRRKLKGRWFLS  104 (105)
T ss_pred             cCchhhhhhhhhhhhhhhcccchhHHHHHHHhccccccc
Confidence            333456999999999999999999999999999999986

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	161
3bbo_4	152	Homology Model For The Spinach Chloroplast 50s Subu		3e-26
3mrz_4	48	Recognition Of The Amber Stop Codon By Release Fact		2e-06
2j01_7	49	Structure Of The Thermus Thermophilus 70s Ribosome		2e-06
1nkw_2	47	Crystal Structure Of The Large Ribosomal Subunit Fr		6e-05
1pnu_2	46	Crystal Structure Of A Streptomycin Dependent Ribos		7e-05

>pdb|3BBO|4 Chain 4, Homology Model For The Spinach Chloroplast 50s Subunit Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome Length = 152

Iteration: 1
 Score =  114 bits (284), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 59/81 (72%), Positives = 67/81 (82%)
Query: 81  GLDFNSNAGVRKEKRQGLVVRAGKAALCQTKRNRSRKSLARTHGFRRRMRTTSGRAILKR 140
           GLD  SN GV  ++ +  VVRAGKAALC TKR+RSRKSLARTHGFR RM TTSGRA+LKR
Sbjct: 70  GLDLTSNTGVSTDRCRRFVVRAGKAALCLTKRSRSRKSLARTHGFRLRMSTTSGRALLKR 129
Query: 141 RRAKGRWVLCPKSYPNSGKRA 161
           RRAKGR +LC K+ P+SGKRA
Sbjct: 130 RRAKGRKILCTKTNPSSGKRA 150

>pdb|3MRZ|4 Chain 4, Recognition Of The Amber Stop Codon By Release Factor Rf1. This Entry 3mrz Contains 50s Ribosomal Subunit. The 30s Ribosomal Subunit Can Be Found In Pdb Entry 3ms0. Molecule A In The Same Asymmetric Unit Is Deposited As 3mr8 (50s) And 3ms1 (30s). Length = 48

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/37 (64%), Positives = 28/37 (75%)
Query: 115 SRKSLARTHGFRRRMRTTSGRAILKRRRAKGRWVLCP 151
           +R+  A+THGFR RMRT  GR +LKRRR KGRW L P
Sbjct: 8   NRRKRAKTHGFRARMRTPGGRKVLKRRRQKGRWRLTP 44

>pdb|2J01|7 Chain 7, Structure Of The Thermus Thermophilus 70s Ribosome Complexed With Mrna, Trna And Paromomycin (Part 2 Of 4). This File Contains The 50s Subunit From Molecule I. Length = 49

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/37 (64%), Positives = 28/37 (75%)
Query: 115 SRKSLARTHGFRRRMRTTSGRAILKRRRAKGRWVLCP 151
           +R+  A+THGFR RMRT  GR +LKRRR KGRW L P
Sbjct: 8   NRRKRAKTHGFRARMRTPGGRKVLKRRRQKGRWRLTP 44

>pdb|1NKW|2 Chain 2, Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans Length = 47

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 22/31 (70%), Positives = 24/31 (77%)
Query: 120 ARTHGFRRRMRTTSGRAILKRRRAKGRWVLC 150
           A+THGFR RM+T SGR IL RRRAKGR  L 
Sbjct: 13  AKTHGFRARMKTKSGRNILARRRAKGRHQLT 43

>pdb|1PNU|2 Chain 2, Crystal Structure Of A Streptomycin Dependent Ribosome From Escherichia Coli, 50s Subunit Of 70s Ribosome. This File, 1pnu, Contains Only Molecules Of The 50s Ribosomal Subunit. The 30s Subunit, Mrna, P-Site Trna, And A-Site Trna Are In The Pdb File 1pns. Length = 46

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 22/31 (70%), Positives = 24/31 (77%)
Query: 120 ARTHGFRRRMRTTSGRAILKRRRAKGRWVLC 150
           A+THGFR RM+T SGR IL RRRAKGR  L 
Sbjct: 13  AKTHGFRARMKTKSGRNILARRRAKGRHQLT 43

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	161
3bbo_4	152	Ribosomal protein L34; large ribosomal subunit, sp	4e-22
3r8s_2	46	50S ribosomal protein L34; protein biosynthesis, R	6e-07
3v2d_7	49	50S ribosomal protein L34; ribosome associated inh	1e-04

>3bbo_4 Ribosomal protein L34; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Length = 152

 Score = 85.6 bits (210), Expect = 4e-22
 Identities = 85/139 (61%), Positives = 99/139 (71%), Gaps = 4/139 (2%)

Query: 23  SRRIPSASLILRTGRSSVSVNVAGNNSSPSRPGLLHCSFVSSSLCSSAFHSAFSGLSLGL 82
           + R PSASL   TG S  +      N   +R G LHCSF++ S   S+  S FSGLSLGL
Sbjct: 16  TNRTPSASLTFITG-SRTTNKRVSFNGGSARSGSLHCSFLAPS---SSLSSNFSGLSLGL 71

Query: 83  DFNSNAGVRKEKRQGLVVRAGKAALCQTKRNRSRKSLARTHGFRRRMRTTSGRAILKRRR 142
           D  SN GV  ++ +  VVRAGKAALC TKR+RSRKSLARTHGFR RM TTSGRA+LKRRR
Sbjct: 72  DLTSNTGVSTDRCRRFVVRAGKAALCLTKRSRSRKSLARTHGFRLRMSTTSGRALLKRRR 131

Query: 143 AKGRWVLCPKSYPNSGKRA 161
           AKGR +LC K+ P+SGKRA
Sbjct: 132 AKGRKILCTKTNPSSGKRA 150

>3r8s_2 50S ribosomal protein L34; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1vs8_2 1vs6_2 2aw4_2 2awb_2 1vt2_2 2i2v_2 2j28_2 2i2t_2* 2qao_2* 2qba_2* 2qbc_2* 2qbe_2 2qbg_2 2qbi_2* 2qbk_2* 2qov_2 2qox_2 2qoz_2* 2qp1_2* 2rdo_2 ... Length = 46

 Score = 43.3 bits (102), Expect = 6e-07
 Identities = 20/35 (57%), Positives = 23/35 (65%)

Query: 115 SRKSLARTHGFRRRMRTTSGRAILKRRRAKGRWVL 149
           S     R+HGFR RM T +GR +L RRRAKGR  L
Sbjct: 8   SVLKRNRSHGFRARMATKNGRQVLARRRAKGRARL 42

>3v2d_7 50S ribosomal protein L34; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_Z 2hgj_6 2hgq_6 2hgu_6 1vsa_Z 2j03_7 2jl6_7 2jl8_7 2v47_7 2v49_7 2wdi_7 2wdj_7 2wdl_7 2wdn_7 2wh2_7 2wh4_7 2wrj_7 2wrl_7 2wro_7 2wrr_7 ... Length = 49

 Score = 37.3 bits (86), Expect = 1e-04
 Identities = 24/37 (64%), Positives = 28/37 (75%)

Query: 115 SRKSLARTHGFRRRMRTTSGRAILKRRRAKGRWVLCP 151
           +R+  A+THGFR RMRT  GR +LKRRR KGRW L P
Sbjct: 8   NRRKRAKTHGFRARMRTPGGRKVLKRRRQKGRWRLTP 44

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	161
3bbo_4	152	Ribosomal protein L34; large ribosomal subunit, sp	100.0
3v2d_7	49	50S ribosomal protein L34; ribosome associated inh	99.77
3r8s_2	46	50S ribosomal protein L34; protein biosynthesis, R	99.75
2ftc_Q	38	L34MT, MRP-L34, 39S ribosomal protein L34, mitocho	99.66

>3bbo_4 Ribosomal protein L34; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}

Probab=100.00  E-value=1.7e-46  Score=297.31  Aligned_cols=147  Identities=60%  Similarity=0.853  Sum_probs=36.7

Q ss_pred             CCccc--ccccCCCCCcCCCcCCCcccCCcceeeeecc-cccceeecccCCCCCCCCCceeeeecccccccccccccccc
Q 031306            1 MASLS--ITTSIPPPWLTSKSTHHSRRIPSASLILRTG-RSSVSVNVAGNNSSPSRPGLLHCSFVSSSLCSSAFHSAFSG   77 (161)
Q Consensus         1 ~~s~~--~~~~~~~~w~~~~s~~~~~~~p~asl~~~sg-r~~~~~~~~~~~~~~srs~~L~~sF~ss~~s~sf~~ssfaG   77 (161)
                      ||+++  .++++..+         +..+|+++|+|++| |.....++...  +++++|+||||||+++.+   ++++|+|
T Consensus         1 ma~~~~~~~~~~~~~---------~~~~p~~s~s~~~~~r~~~~~~~~~~--~~a~s~~l~~sf~ss~~s---~~ssf~G   66 (152)
T 3bbo_4            1 MATLSLLSTGVGAAI---------TNRTPSASLTFITGSRTTNKRVSFNG--GSARSGSLHCSFLAPSSS---LSSNFSG   66 (152)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             Cccccccccccccee---------eccCCCcccccccccccccccccccc--ccccCcceeeeecccccc---CCCcccc
Confidence            45444  35666665         67789999999999 77777666666  899999999999999966   7899999


Q ss_pred             ccccccccccccccccCCceeEEEecccccccccccccccchhhhhhhhhhccChhhHHHHHHHHHcCCceEecccCCCC
Q 031306           78 LSLGLDFNSNAGVRKEKRQGLVVRAGKAALCQTKRNRSRKSLARTHGFRRRMRTTSGRAILKRRRAKGRWVLCPKSYPNS  157 (161)
Q Consensus        78 ~slgl~l~~~~g~~~~rg~~~~Vr~GkRtl~~TKR~~sr~kRkR~HGFraRM~T~~GRkVL~RRR~KGRk~Ls~s~~~~s  157 (161)
                      ++||+||++|+++.++|++++||++||+++++|+++++++||||+|||++||+|++||+||++||+||||+|++++++++
T Consensus        67 ~sl~~~l~~~i~~~~~r~~gl~Vr~Gkr~~~~T~r~pS~~kRkR~HGFraRM~Tk~GRkVL~rRRaKGRk~Ls~s~~~~s  146 (152)
T 3bbo_4           67 LSLGLDLTSNTGVSTDRCRRFVVRAGKAALCLTKRSRSRKSLARTHGFRLRMSTTSGRALLKRRRAKGRKILCTKTNPSS  146 (152)
T ss_dssp             -------------------------------------CTTHHHHTSCHHHHHHSGGGTTTTHHHHTTTCSCSCC------
T ss_pred             cccccccccceeeccCCCcceEEEccCccccccCCCCccceeehhhcHHHHhcChhhHHHHHHHHHhCCcEEeeccCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCC
Q 031306          158 GKRA  161 (161)
Q Consensus       158 gk~a  161 (161)
                      ||++
T Consensus       147 Gk~~  150 (152)
T 3bbo_4          147 GKRA  150 (152)
T ss_dssp             ----
T ss_pred             CCcC
Confidence            9975

>3v2d_7 50S ribosomal protein L34; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_Z 2hgj_6 2hgq_6 2hgu_6 1vsa_Z 2j03_7 2jl6_7 2jl8_7 2v47_7 2v49_7 2wdi_7 2wdj_7 2wdl_7 2wdn_7 2wh2_7 2wh4_7 2wrj_7 2wrl_7 2wro_7 2wrr_7 ...

Probab=99.77  E-value=5.6e-20  Score=123.42  Aligned_cols=47  Identities=53%  Similarity=0.871  Sum_probs=42.1

Q ss_pred             ccccccccccccccchhhhhhhhhhccChhhHHHHHHHHHcCCceEecccCC
Q 031306          104 KAALCQTKRNRSRKSLARTHGFRRRMRTTSGRAILKRRRAKGRWVLCPKSYP  155 (161)
Q Consensus       104 kRtl~~TKR~~sr~kRkR~HGFraRM~T~~GRkVL~RRR~KGRk~Ls~s~~~  155 (161)
                      ||||+++++     +|+|+|||++||+|++||+||++||+|||++|+++++.
T Consensus         2 KRTyQPs~~-----kRkr~hGFraRm~T~~GRkVL~rRR~KGRk~Ls~s~~~   48 (49)
T 3v2d_7            2 KRTWQPNRR-----KRAKTHGFRARMRTPGGRKVLKRRRQKGRWRLTPAVRK   48 (49)
T ss_dssp             CCSCCCCHH-----HHHHHHSHHHHHHSHHHHHHHHHHHHHTCSCSSCCCCC
T ss_pred             CCCCCCCce-----eechhhcHHHHccCcchhHHHHHHHHcCCcEeeeeccc
Confidence            566666655     89999999999999999999999999999999998763

>3r8s_2 50S ribosomal protein L34; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1vs8_2 1vs6_2 2aw4_2 2awb_2 1vt2_2 2i2v_2 2j28_2 2i2t_2* 2qao_2* 2qba_2* 2qbc_2* 2qbe_2 2qbg_2 2qbi_2* 2qbk_2* 2qov_2 2qox_2 2qoz_2* 2qp1_2* 2rdo_2 ...

Probab=99.75  E-value=1.7e-19  Score=119.76  Aligned_cols=44  Identities=45%  Similarity=0.641  Sum_probs=39.8

Q ss_pred             ccccccccccccccchhhhhhhhhhccChhhHHHHHHHHHcCCceEecc
Q 031306          104 KAALCQTKRNRSRKSLARTHGFRRRMRTTSGRAILKRRRAKGRWVLCPK  152 (161)
Q Consensus       104 kRtl~~TKR~~sr~kRkR~HGFraRM~T~~GRkVL~RRR~KGRk~Ls~s  152 (161)
                      ||||+++++     +|+|+|||++||+|++||+||++||+|||++|+++
T Consensus         2 KrTyQPs~~-----kRkr~hGFraRm~T~~GRkvL~rRR~KGRk~Ls~s   45 (46)
T 3r8s_2            2 KRTFQPSVL-----KRNRSHGFRARMATKNGRQVLARRRAKGRARLTVS   45 (46)
T ss_dssp             CCSCCCCHH-----HHHHHHSHHHHHTSHHHHHHHHHHHHHTCSCSSCC
T ss_pred             CCCCCCCce-----eechhhcHHHHccCcchhHHHHHHHHcCCceeccc
Confidence            566666655     89999999999999999999999999999999985

>2ftc_Q L34MT, MRP-L34, 39S ribosomal protein L34, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}

Probab=99.66  E-value=2.5e-17  Score=105.65  Aligned_cols=33  Identities=36%  Similarity=0.550  Sum_probs=31.6

Q ss_pred             cchhhhhhhhhhccChhhHHHHHHHHHcCCceE
Q 031306          117 KSLARTHGFRRRMRTTSGRAILKRRRAKGRWVL  149 (161)
Q Consensus       117 ~kRkR~HGFraRM~T~~GRkVL~RRR~KGRk~L  149 (161)
                      ++|+|+|||++||+|++||+||++||+|||++|
T Consensus         6 ~kRkr~hGFraRm~T~~GRkvl~rRR~KGR~~L   38 (38)
T 2ftc_Q            6 IKRKNKHGWVRRLSTPAGVQVILRRMLKGRKSL   38 (38)
T ss_pred             ccchhhhcHHHHccChhhHHHHHHHHHcCcccC
Confidence            489999999999999999999999999999986

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00