Citrus Sinensis ID: 031338

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-
Protein Sequence
MIEALMARAVGIVSPTILFQFGLSPQTIASLGRRGISFSSSSAGFRSIRAVQENGGPRRLVDIVRLVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVLCVLLTEYVTRFYYSRPKVTFPLALLNNFKMGFTYGLFIDAFKLAS
Secondary Structure (PSIPRED)
cHHHHHHHHHcccccccccccccccHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHcccccccEEEEcccccccEEEccccccccccccccccEEEEEEcccccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MIEALMARAVgivsptilfqfglspqtiaslgrrgisfssssagFRSIRAVQenggprrlVDIVRLVPelsrnyfrspsrralFGGISLLGGFYVAQTISLSFGALGVNDVIAAVLCVLLTEYVTRfyysrpkvtfpLALLNNFKMGFTYGLFIDAFKLAS
Flexible Loop (DISEMBL)
MIEALMARAVGIVSPTILFQFGLSPQTIASLGRRGISFSSSSAGFRSIRavqenggprrlvDIVRLVPELsrnyfrspsrrALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVLCVLLTEYVTRFYYSRPKVTFPLALLNNFKMGFTYGLFIDAFKLAS
Low Complexity Region (SEG)
MIEALMARAVGIVSPTILFQFGLSPQTIASLGrrgisfssssagfrsiraVQENGGPRRLVDIVRLVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVLCVLLTEYVTRFYYSRPKVTFPLALLNNFKMGFTYGLFIDAFKLAS
Disordered region (IsUnstruct)
****LMARAVGIVSPTILFQFGLSPQTIASLGRRGISF******FRSIRAVQ*NGGPRRLVDIVRLVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVLCVLLTEYVTRFYYSRPKVTFPLALLNNFKMGFTYGLFIDAFK***
Disordered Region (DISOPRED)
***********IVSPTILFQFGLS************************************VDIVRLVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVLCVLLTEYVTRFYYSRPKVTFPLALLNNFKMGFTYGLFIDAFKLAS
Disordered Region (DISEMBL)
MIEALMARAVGIVSPTILFQFGLSPQTIASLGRRGISFSSSSAGFRSIRAVQENGGPRRLVDIVRLVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVLCVLLTEYVTRFYYSRPKVTFPLALLNNFKMGFTYGLFIDAFKLAS
Disordered Region (DISPRO)
MIEALMARAVGIVSPTILFQFGLSPQTIASLGRRGISFSSSSAGFRSIRAVQENGGPRRLVDIVRLVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVLCVLLTEYVTRFYYSRPKVTFPLALLNNFKMGFTYGLFIDAFKLAS
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MIEALMARAVGIVSPTILFQFGLSPQTIASLGRRGISFSSSSAGFRSIRAVQENGGPRRLVDIVRLVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVLCVLLTEYVTRFYYSRPKVTFPLALLNNFKMGFTYGLFIDAFKLAS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	161	2.2.26 [Sep-21-2011]
P72983	109	Ycf20-like protein OS=Syn	N/A	no	0.639	0.944	0.371	5e-10
Q1XDS2	108	Uncharacterized protein y	N/A	no	0.590	0.879	0.422	6e-10
P51214	108	Uncharacterized protein y	N/A	no	0.552	0.824	0.445	9e-09
O80813	197	Ycf20-like protein OS=Ara	no	no	0.453	0.370	0.35	0.0002
Q9MUL5	116	Uncharacterized protein y	N/A	no	0.434	0.603	0.354	0.0003

>sp|P72983|YC20L_SYNY3 Ycf20-like protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll1509 PE=3 SV=1

 Score = 63.5 bits (153), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 39/105 (37%), Positives = 56/105 (53%), Gaps = 2/105 (1%)

Query: 59  RLVDIVRLVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVLCV 118
           RL  IV +  +    +FR+P RR     +S L GF+V   ++ + G     DV+ A   +
Sbjct: 5   RLNTIVEVRGQQLSQFFRNPWRRISLSLLSFLFGFFVGTAVATTAGQNSQWDVVCAAFIL 64

Query: 119 LLTEYVTRFYYSRPKVTFPL--ALLNNFKMGFTYGLFIDAFKLAS 161
           L  E V R++Y R      L   +LN FKMG +Y LF++AFKL S
Sbjct: 65  LFCELVNRWFYRRGVKMGDLQAEVLNIFKMGVSYSLFLEAFKLGS 109

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

>sp|Q1XDS2|YCF20_PORYE Uncharacterized protein ycf20 OS=Porphyra yezoensis GN=ycf20 PE=3 SV=1

 Score = 63.2 bits (152), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 41/97 (42%), Positives = 55/97 (56%), Gaps = 2/97 (2%)

Query: 66  LVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVLCVLLTEYVT 125
           L+  L+   + S S     G ISLL GF+++  +S   G  G   +IAA L V  TE  +
Sbjct: 13  LIKNLNNKLYYSLSELTT-GLISLLLGFFISTGLSTIPGQTGDWGIIAASLIVAATELTS 71

Query: 126 RFYYSRPK-VTFPLALLNNFKMGFTYGLFIDAFKLAS 161
           +  YS  K +   + L NNFK+G TYGLF+DAFKL S
Sbjct: 72  KIVYSSHKQLNIKINLFNNFKIGITYGLFVDAFKLGS 108

Porphyra yezoensis (taxid: 2788)

>sp|P51214|YCF20_PORPU Uncharacterized protein ycf20 OS=Porphyra purpurea GN=ycf20 PE=3 SV=1

 Score = 59.7 bits (143), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 41/92 (44%), Positives = 53/92 (57%), Gaps = 3/92 (3%)

Query: 71  SRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVLCVLLTEYVTRFYYS 130
           SR Y+      A  G ISLL GF+++  +S   G  G   +IAA L V   E V++  YS
Sbjct: 19  SRLYYSLNELTA--GLISLLLGFFISTGLSTIPGQTGDWGIIAASLIVAAIELVSKIVYS 76

Query: 131 -RPKVTFPLALLNNFKMGFTYGLFIDAFKLAS 161
            + K    + LLNN K+G TYGLF+DAFKL S
Sbjct: 77  NKKKYGVRINLLNNLKIGITYGLFVDAFKLGS 108

Porphyra purpurea (taxid: 2787)

>sp|O80813|YC20L_ARATH Ycf20-like protein OS=Arabidopsis thaliana GN=At1g65420 PE=2 SV=2

 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 39/80 (48%), Gaps = 7/80 (8%)

Query: 89  LLGGFYVAQTISLSFGALGVNDVIAAVLCVLLTEYVTRFYYSRP-------KVTFPLALL 141
           LL GFY A  ++   G  G  DV+ A + V   E +    Y +P       K+   +  +
Sbjct: 118 LLLGFYTANALATILGQTGDWDVLVAGIVVAAIEGIGMLMYKKPSSSMFSGKLQSFVVFM 177

Query: 142 NNFKMGFTYGLFIDAFKLAS 161
           N +K G   GLF+DAFKL S
Sbjct: 178 NFWKAGVCLGLFVDAFKLGS 197

Arabidopsis thaliana (taxid: 3702)

>sp|Q9MUL5|YCF20_MESVI Uncharacterized protein ycf20 OS=Mesostigma viride GN=ycf20 PE=3 SV=1

 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 42/79 (53%), Gaps = 9/79 (11%)

Query: 92  GFYVAQTISLSFGALGVNDVIAAVLCVLLTEYVTRFYYSRP----KVTFPLALL-----N 142
           GF++A  ++  FG  G  DV+ A + V + E +    YS+     K  F ++ L     N
Sbjct: 38  GFFIATVLATVFGQTGDWDVLVAGILVAMIEILGNKMYSKKYISKKQVFDISFLSLIGIN 97

Query: 143 NFKMGFTYGLFIDAFKLAS 161
             K+G  +GLF+DAFKL S
Sbjct: 98  YIKIGLIFGLFVDAFKLGS 116

Mesostigma viride (taxid: 41882)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	161
225469306	155	PREDICTED: ycf20-like protein isoform 2	0.962	1.0	0.782	2e-60
255539575	155	conserved hypothetical protein [Ricinus	0.962	1.0	0.769	7e-60
356566265	151	PREDICTED: uncharacterized protein ycf20	0.863	0.920	0.859	1e-59
224122468	155	predicted protein [Populus trichocarpa]	0.962	1.0	0.762	3e-59
449451787	156	PREDICTED: uncharacterized protein ycf20	0.956	0.987	0.759	4e-58
212274997	155	hypothetical protein [Zea mays] gi|19468	0.913	0.948	0.718	3e-53
115459106	155	Os04g0488600 [Oryza sativa Japonica Grou	0.751	0.780	0.876	7e-53
125548804	190	hypothetical protein OsI_16403 [Oryza sa	0.751	0.636	0.876	1e-52
297795157	159	hypothetical protein ARALYDRAFT_917392 [	0.720	0.729	0.872	3e-52
15239166	158	uncharacterized protein [Arabidopsis tha	0.720	0.734	0.872	6e-52

>gi|225469306|ref|XP_002269823.1| PREDICTED: ycf20-like protein isoform 2 [Vitis vinifera] gi|225469308|ref|XP_002269782.1| PREDICTED: ycf20-like protein isoform 1 [Vitis vinifera] gi|297741124|emb|CBI31855.3| unnamed protein product [Vitis vinifera]

 Score =  236 bits (602), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 122/156 (78%), Positives = 136/156 (87%), Gaps = 1/156 (0%)

Query: 6   MARAVGIVSPTILFQFGLSPQTIASLGRRGISFSSSSAGFRSIRAVQENGGPRRLVDIVR 65
           MA ++ + S T L +FGL+  T  S G+  +  S SS  F S++AVQEN GPRRLVDI+R
Sbjct: 1   MAHSLSLPS-TCLLKFGLATGTRVSHGKCSMLASRSSPRFFSVQAVQENEGPRRLVDIIR 59

Query: 66  LVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVLCVLLTEYVT 125
           +VP+LSRNYF+SPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVLCVL+TEYVT
Sbjct: 60  IVPQLSRNYFQSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVLCVLITEYVT 119

Query: 126 RFYYSRPKVTFPLALLNNFKMGFTYGLFIDAFKLAS 161
           RFYYSRPKVTFPLALLNNFKMGFTYGLFIDAFKLAS
Sbjct: 120 RFYYSRPKVTFPLALLNNFKMGFTYGLFIDAFKLAS 155

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539575|ref|XP_002510852.1| conserved hypothetical protein [Ricinus communis] gi|223549967|gb|EEF51454.1| conserved hypothetical protein [Ricinus communis]

 Score =  234 bits (598), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 120/156 (76%), Positives = 134/156 (85%), Gaps = 1/156 (0%)

Query: 6   MARAVGIVSPTILFQFGLSPQTIASLGRRGISFSSSSAGFRSIRAVQENGGPRRLVDIVR 65
           MA ++G++  T+  + G   Q   S G+ G+  S SS G  SI+AVQ+NGGP+RLVDI+R
Sbjct: 1   MALSIGLIQ-TVPLKLGFGFQRRVSCGKYGMLISRSSRGLLSIQAVQDNGGPQRLVDIIR 59

Query: 66  LVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVLCVLLTEYVT 125
            VPE SRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAV+CVLLTEYVT
Sbjct: 60  RVPEFSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVICVLLTEYVT 119

Query: 126 RFYYSRPKVTFPLALLNNFKMGFTYGLFIDAFKLAS 161
           RFYYSRPKVTFP+ALLNNFKMGFTYGLFIDAFKLAS
Sbjct: 120 RFYYSRPKVTFPVALLNNFKMGFTYGLFIDAFKLAS 155

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356566265|ref|XP_003551354.1| PREDICTED: uncharacterized protein ycf20-like [Glycine max]

 Score =  234 bits (596), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 122/142 (85%), Positives = 128/142 (90%), Gaps = 3/142 (2%)

Query: 20  QFGLSPQTIASLGRRGISFSSSSAGFRSIRAVQENGGPRRLVDIVRLVPELSRNYFRSPS 79
            FG  P+T  S+  R +S   SSAG R IRAVQENGGPRRLVDI+RLVPE SRNYFRSPS
Sbjct: 13  SFGPLPKTKVSVSGRLVS--RSSAGLR-IRAVQENGGPRRLVDIIRLVPEFSRNYFRSPS 69

Query: 80  RRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVLCVLLTEYVTRFYYSRPKVTFPLA 139
           RRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVLCVLLTEYVT+FYYSRPKVTFP+A
Sbjct: 70  RRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVLCVLLTEYVTKFYYSRPKVTFPVA 129

Query: 140 LLNNFKMGFTYGLFIDAFKLAS 161
           LLNNFKMGFTYGLFIDAFKLAS
Sbjct: 130 LLNNFKMGFTYGLFIDAFKLAS 151

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122468|ref|XP_002318844.1| predicted protein [Populus trichocarpa] gi|222859517|gb|EEE97064.1| predicted protein [Populus trichocarpa]

 Score =  233 bits (593), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 119/156 (76%), Positives = 132/156 (84%), Gaps = 1/156 (0%)

Query: 6   MARAVGIVSPTILFQFGLSPQTIASLGRRGISFSSSSAGFRSIRAVQENGGPRRLVDIVR 65
           MA++V +++ T   + G +PQ   S  + G S   SS G   IRAVQEN GPRRL+DI+R
Sbjct: 1   MAQSVSLIT-TCPLKLGFAPQRRVSSVKYGTSVFRSSTGRLRIRAVQENEGPRRLIDIIR 59

Query: 66  LVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVLCVLLTEYVT 125
            +PELSRNYFR PSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAV+CVLLTEYVT
Sbjct: 60  TIPELSRNYFRRPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVT 119

Query: 126 RFYYSRPKVTFPLALLNNFKMGFTYGLFIDAFKLAS 161
           RFYYSRPKVTFP+ALLNNFKMGFTYGLFIDAFKLAS
Sbjct: 120 RFYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS 155

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449451787|ref|XP_004143642.1| PREDICTED: uncharacterized protein ycf20-like [Cucumis sativus] gi|449530953|ref|XP_004172456.1| PREDICTED: uncharacterized protein ycf20-like [Cucumis sativus]

 Score =  228 bits (582), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 120/158 (75%), Positives = 133/158 (84%), Gaps = 4/158 (2%)

Query: 6   MARAVGIVSPTILFQFGLSPQTIASLGRRGI--SFSSSSAGFRSIRAVQENGGPRRLVDI 63
           MA++  +V  T L  +G +P+   S  R  +  S  S    FR ++AVQ+ GGPRRLVDI
Sbjct: 1   MAQSASLVH-TSLLNYGFTPKMNPSYWRYDMVKSRPSPPRSFR-VKAVQDTGGPRRLVDI 58

Query: 64  VRLVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVLCVLLTEY 123
           +RLVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAV+CVLLTEY
Sbjct: 59  IRLVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEY 118

Query: 124 VTRFYYSRPKVTFPLALLNNFKMGFTYGLFIDAFKLAS 161
           VTRFYYSRPKVTFP+ALLNNFKMGFTYGLFIDAFKLAS
Sbjct: 119 VTRFYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS 156

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|212274997|ref|NP_001130729.1| hypothetical protein [Zea mays] gi|194689966|gb|ACF79067.1| unknown [Zea mays] gi|195626582|gb|ACG35121.1| hypothetical protein [Zea mays] gi|223950487|gb|ACN29327.1| unknown [Zea mays] gi|414586642|tpg|DAA37213.1| TPA: hypothetical protein ZEAMMB73_365649 [Zea mays] gi|414586643|tpg|DAA37214.1| TPA: hypothetical protein ZEAMMB73_365649 [Zea mays] gi|414586644|tpg|DAA37215.1| TPA: hypothetical protein ZEAMMB73_365649 [Zea mays] gi|414586645|tpg|DAA37216.1| TPA: hypothetical protein ZEAMMB73_365649 [Zea mays] gi|414586646|tpg|DAA37217.1| TPA: hypothetical protein ZEAMMB73_365649 [Zea mays]

 Score =  213 bits (541), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 110/153 (71%), Positives = 125/153 (81%), Gaps = 6/153 (3%)

Query: 9   AVGIVSPTILFQFGLSPQTIASLGRRGISFSSSSAGFRSIRAVQENGGPRRLVDIVRLVP 68
           AVG+ S  +  +     QT  +  ++      SS  +  IRAVQ NGG RRLVDI+R++P
Sbjct: 9   AVGLPSYGLYLETRFLTQTYRNFAQK------SSYKYSRIRAVQGNGGRRRLVDIIRIIP 62

Query: 69  ELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVLCVLLTEYVTRFY 128
           ELSR+YF+S SRRALFGGISLLGGFYVAQTISLSFG LGVNDVIAAV+CVLLTEYVT+FY
Sbjct: 63  ELSRDYFKSRSRRALFGGISLLGGFYVAQTISLSFGTLGVNDVIAAVVCVLLTEYVTKFY 122

Query: 129 YSRPKVTFPLALLNNFKMGFTYGLFIDAFKLAS 161
           YSRPKVTFP+ALLNNFKMGFTYGLFIDAFKLAS
Sbjct: 123 YSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS 155

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115459106|ref|NP_001053153.1| Os04g0488600 [Oryza sativa Japonica Group] gi|38344242|emb|CAD41335.2| OJ991113_30.19 [Oryza sativa Japonica Group] gi|113564724|dbj|BAF15067.1| Os04g0488600 [Oryza sativa Japonica Group] gi|215707021|dbj|BAG93481.1| unnamed protein product [Oryza sativa Japonica Group] gi|215737413|dbj|BAG96543.1| unnamed protein product [Oryza sativa Japonica Group]

 Score =  211 bits (538), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 106/121 (87%), Positives = 111/121 (91%)

Query: 41  SSAGFRSIRAVQENGGPRRLVDIVRLVPELSRNYFRSPSRRALFGGISLLGGFYVAQTIS 100
           SS  F  +RAVQ N G RRLVDI+R +PELSRNYFRS SRRALFGGISLLGGFYVAQTIS
Sbjct: 35  SSYKFIKVRAVQGNDGRRRLVDIIRTIPELSRNYFRSRSRRALFGGISLLGGFYVAQTIS 94

Query: 101 LSFGALGVNDVIAAVLCVLLTEYVTRFYYSRPKVTFPLALLNNFKMGFTYGLFIDAFKLA 160
           LSFGALGVNDVIAAV+CVLLTEYVT+FYYSRPKVTFP ALLNNFKMGFTYGLFIDAFKLA
Sbjct: 95  LSFGALGVNDVIAAVVCVLLTEYVTKFYYSRPKVTFPFALLNNFKMGFTYGLFIDAFKLA 154

Query: 161 S 161
           S
Sbjct: 155 S 155

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|125548804|gb|EAY94626.1| hypothetical protein OsI_16403 [Oryza sativa Indica Group] gi|125590821|gb|EAZ31171.1| hypothetical protein OsJ_15270 [Oryza sativa Japonica Group]

 Score =  211 bits (536), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 106/121 (87%), Positives = 111/121 (91%)

Query: 41  SSAGFRSIRAVQENGGPRRLVDIVRLVPELSRNYFRSPSRRALFGGISLLGGFYVAQTIS 100
           SS  F  +RAVQ N G RRLVDI+R +PELSRNYFRS SRRALFGGISLLGGFYVAQTIS
Sbjct: 70  SSYKFIKVRAVQGNDGRRRLVDIIRTIPELSRNYFRSRSRRALFGGISLLGGFYVAQTIS 129

Query: 101 LSFGALGVNDVIAAVLCVLLTEYVTRFYYSRPKVTFPLALLNNFKMGFTYGLFIDAFKLA 160
           LSFGALGVNDVIAAV+CVLLTEYVT+FYYSRPKVTFP ALLNNFKMGFTYGLFIDAFKLA
Sbjct: 130 LSFGALGVNDVIAAVVCVLLTEYVTKFYYSRPKVTFPFALLNNFKMGFTYGLFIDAFKLA 189

Query: 161 S 161
           S
Sbjct: 190 S 190

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297795157|ref|XP_002865463.1| hypothetical protein ARALYDRAFT_917392 [Arabidopsis lyrata subsp. lyrata] gi|297311298|gb|EFH41722.1| hypothetical protein ARALYDRAFT_917392 [Arabidopsis lyrata subsp. lyrata]

 Score =  209 bits (532), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 103/118 (87%), Positives = 109/118 (92%), Gaps = 2/118 (1%)

Query: 46  RSIRAVQENGGP--RRLVDIVRLVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSF 103
           RSIRA+QE  GP  RRL+DI+R VPE+SRNYF+ PSRR LFGGISLLGGFYVAQTISLSF
Sbjct: 42  RSIRALQETEGPTPRRLIDIIRSVPEISRNYFKKPSRRTLFGGISLLGGFYVAQTISLSF 101

Query: 104 GALGVNDVIAAVLCVLLTEYVTRFYYSRPKVTFPLALLNNFKMGFTYGLFIDAFKLAS 161
           GALGVNDVIAAVLCVLLTEYVTRFYYSR  VTFP+ALLNNFKMGFTYGLFIDAFKLAS
Sbjct: 102 GALGVNDVIAAVLCVLLTEYVTRFYYSRTTVTFPIALLNNFKMGFTYGLFIDAFKLAS 159

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15239166|ref|NP_199119.1| uncharacterized protein [Arabidopsis thaliana] gi|9757831|dbj|BAB08268.1| unnamed protein product [Arabidopsis thaliana] gi|88900426|gb|ABD57525.1| At5g43050 [Arabidopsis thaliana] gi|332007521|gb|AED94904.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  208 bits (529), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 103/118 (87%), Positives = 109/118 (92%), Gaps = 2/118 (1%)

Query: 46  RSIRAVQENGGP--RRLVDIVRLVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSF 103
           RSIRA+QE  GP  RRL+DI+R VPE+SRNYF+ PSRR LFGGISLLGGFYVAQTISLSF
Sbjct: 41  RSIRALQETEGPTPRRLIDIIRSVPEISRNYFKKPSRRTLFGGISLLGGFYVAQTISLSF 100

Query: 104 GALGVNDVIAAVLCVLLTEYVTRFYYSRPKVTFPLALLNNFKMGFTYGLFIDAFKLAS 161
           GALGVNDVIAAVLCVLLTEYVTRFYYSR  VTFP+ALLNNFKMGFTYGLFIDAFKLAS
Sbjct: 101 GALGVNDVIAAVLCVLLTEYVTRFYYSRTTVTFPIALLNNFKMGFTYGLFIDAFKLAS 158

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	161
TAIR|locus:2167811	158	NPQ6 "AT5G43050" [Arabidopsis	0.689	0.702	0.867	2e-47
TAIR|locus:2103645	230	AT3G56830 "AT3G56830" [Arabido	0.434	0.304	0.386	1.4e-05
TAIR|locus:2206305	197	NPQ7 "AT1G65420" [Arabidopsis	0.453	0.370	0.35	8e-05

TAIR|locus:2167811 NPQ6 "AT5G43050" [Arabidopsis thaliana (taxid:3702)]

 Score = 496 (179.7 bits), Expect = 2.0e-47, P = 2.0e-47
 Identities = 98/113 (86%), Positives = 104/113 (92%)

Query:    51 VQENGGP--RRLVDIVRLVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGV 108
             +QE  GP  RRL+DI+R VPE+SRNYF+ PSRR LFGGISLLGGFYVAQTISLSFGALGV
Sbjct:    46 LQETEGPTPRRLIDIIRSVPEISRNYFKKPSRRTLFGGISLLGGFYVAQTISLSFGALGV 105

Query:   109 NDVIAAVLCVLLTEYVTRFYYSRPKVTFPLALLNNFKMGFTYGLFIDAFKLAS 161
             NDVIAAVLCVLLTEYVTRFYYSR  VTFP+ALLNNFKMGFTYGLFIDAFKLAS
Sbjct:   106 NDVIAAVLCVLLTEYVTRFYYSRTTVTFPIALLNNFKMGFTYGLFIDAFKLAS 158

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0010196 "nonphotochemical quenching" evidence=IMP

TAIR|locus:2103645 AT3G56830 "AT3G56830" [Arabidopsis thaliana (taxid:3702)]

 Score = 105 (42.0 bits), Expect = 1.4e-05, P = 1.4e-05
 Identities = 29/75 (38%), Positives = 39/75 (52%)

Query:    89 LLGGFYVAQTISLSFGALGVNDVIAAVLCVLLTEYVTRFYY--SRP---KVTFPLALLNN 143
             LL GFY A   S   G  G  DV++A L VL+ E +    Y  S P   K+   + + N 
Sbjct:   113 LLVGFYSATAFSTFIGQTGDWDVLSAGLAVLVVECIGALMYRASIPLINKMRSTITMFNY 172

Query:   144 FKMGFTYGLFIDAFK 158
             +K G   GLF+D+FK
Sbjct:   173 WKTGLALGLFLDSFK 187

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2206305 NPQ7 "AT1G65420" [Arabidopsis thaliana (taxid:3702)]

 Score = 102 (41.0 bits), Expect = 8.0e-05, P = 8.0e-05
 Identities = 28/80 (35%), Positives = 39/80 (48%)

Query:    89 LLGGFYVAQTISLSFGALGVNDVIAAVLCVLLTEYVTRFYYSRP-------KVTFPLALL 141
             LL GFY A  ++   G  G  DV+ A + V   E +    Y +P       K+   +  +
Sbjct:   118 LLLGFYTANALATILGQTGDWDVLVAGIVVAAIEGIGMLMYKKPSSSMFSGKLQSFVVFM 177

Query:   142 NNFKMGFTYGLFIDAFKLAS 161
             N +K G   GLF+DAFKL S
Sbjct:   178 NFWKAGVCLGLFVDAFKLGS 197


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.328   0.144   0.417    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      161       143   0.00091  102 3  11 22  0.36    31
                                                     30  0.48    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  489 (52 KB)
  Total size of DFA:  102 KB (2073 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  11.04u 0.11s 11.15t   Elapsed:  00:00:00
  Total cpu time:  11.04u 0.11s 11.15t   Elapsed:  00:00:00
  Start:  Fri May 10 22:14:01 2013   End:  Fri May 10 22:14:01 2013

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0010196 "nonphotochemical quenching" evidence=IMP

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	161
pfam04483	60	pfam04483, DUF565, Protein of unknown function (DU	3e-19

>gnl|CDD|218106 pfam04483, DUF565, Protein of unknown function (DUF565)

 Score = 76.1 bits (188), Expect = 3e-19
 Identities = 28/60 (46%), Positives = 38/60 (63%), Gaps = 3/60 (5%)

Query: 105 ALGVNDVIAAVLCVLLTEYVTRFYYSRPKVTF---PLALLNNFKMGFTYGLFIDAFKLAS 161
             G  D++AA + V +TE +++ +YSRP        L LLN FK+G  YGLF+DAFKL S
Sbjct: 1   QTGDWDILAAAILVAITEIISKLFYSRPSKKRRSLILELLNLFKIGLIYGLFVDAFKLGS 60

Predicted transmembrane protein found in plants, chloroplasts and cyanobacteria. This family is also known as YCF20. Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	161
PF04483	60	DUF565: Protein of unknown function (DUF565); Inte	99.92

>PF04483 DUF565: Protein of unknown function (DUF565); InterPro: IPR007572 This family represents Ycf20, it is found in cyanobacteria and is also encoded in plant and algal chloroplasts; its function is unknown

Probab=99.92  E-value=2.1e-25  Score=153.52  Aligned_cols=57  Identities=53%  Similarity=0.869  Sum_probs=53.6

Q ss_pred             ccccchHHHHHHHHHHHHHHHHHhccCCCC---CchhhhhhHHHHHHHHHHHHHHhccCC
Q 031338          105 ALGVNDVIAAVLCVLLTEYVTRFYYSRPKV---TFPLALLNNFKMGFTYGLFIDAFKLAS  161 (161)
Q Consensus       105 q~g~wD~l~A~liVl~~Evi~rl~Y~r~~~---~l~~~lLN~fKIGllYGLflEAFKLGS  161 (161)
                      |+|+|||++|+++|+++|++++++|+++++   +++++++|+||||++||||+|||||||
T Consensus         1 Q~g~wD~i~a~~iv~~~E~i~~l~Y~~~~~~~~~~~~~~lN~~KiGl~YgLfleAFKLGS   60 (60)
T PF04483_consen    1 QTGDWDVIAAAIIVLFIEVISRLRYSKPKKKRKSLLVELLNNFKIGLLYGLFLEAFKLGS   60 (60)
T ss_pred             CCchhHHHHHHHHHHHHHHHHHHhhccccccccchHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            789999999999999999999999997643   478999999999999999999999998

As the family is exclusively found in phototrophic organisms it may therefore play a role in photosynthesis.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00